BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] (425 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] gi|254040535|gb|ACT57331.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] Length = 425 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/425 (100%), Positives = 425/425 (100%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC Sbjct: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH Sbjct: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 Query: 421 RCNFQ 425 RCNFQ Sbjct: 421 RCNFQ 425 >gi|315122721|ref|YP_004063210.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496123|gb|ADR52722.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 424 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/424 (90%), Positives = 401/424 (94%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL+GKSL +SM+RGHWD D IL KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGLKGKSLDESMARGHWDGTDNILGKGRDWIISEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK CSDRPHYLVVNADESEPGTCKDRDIMRHEPH LIEGCVIASFAIGAHC Sbjct: 61 STGMKWSFMPKTCSDRPHYLVVNADESEPGTCKDRDIMRHEPHVLIEGCVIASFAIGAHC 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 FIYVRGEFIRERESLQ AVDECYA GLLG NSKLGYDVDIIVHHGAGAYICGEETALLE Sbjct: 121 VFIYVRGEFIRERESLQTAVDECYARGLLGRNSKLGYDVDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAVVPTILRRGASWYS FGRENNRGTK Sbjct: 181 SLEGKKGLPRLKPPFPANMGLYGCPTTVNNVESIAVVPTILRRGASWYSSFGRENNRGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL QMRG Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLTGDQMRG 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYD LK MGSGLGTAAVIVMDRSTDII+AIWRLSVFYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDSLKAMGSGLGTAAVIVMDRSTDIIRAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER+V+G+AQK EID+L+EVSKNIEGRTICALGDAAAWPIQGLIKNFR ++EERIDQY+ Sbjct: 361 LMERMVRGVAQKHEIDMLFEVSKNIEGRTICALGDAAAWPIQGLIKNFRHVMEERIDQYN 420 Query: 421 RCNF 424 +F Sbjct: 421 VHHF 424 >gi|150396117|ref|YP_001326584.1| NADH dehydrogenase I subunit F [Sinorhizobium medicae WSM419] gi|150027632|gb|ABR59749.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae WSM419] Length = 434 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/421 (83%), Positives = 386/421 (91%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL +M+RGHWD + LEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNIYGLMDKSLKGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECYA GLLG N+KLGYD+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAYGLLGKNNKLGYDIDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P QM+ Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|15965023|ref|NP_385376.1| NADH dehydrogenase I subunit F [Sinorhizobium meliloti 1021] gi|307301095|ref|ZP_07580864.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] gi|307317829|ref|ZP_07597267.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] gi|7387963|sp|P56912|NUOF1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 1; AltName: Full=NADH dehydrogenase I subunit F 1; AltName: Full=NDH-1 subunit F 1 gi|5650740|emb|CAB51626.1| nuoF1 [Sinorhizobium meliloti] gi|15074202|emb|CAC45849.1| NADH-quinone oxidoreductase subunit F 1 [Sinorhizobium meliloti 1021] gi|306896591|gb|EFN27339.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] gi|306904050|gb|EFN34636.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] Length = 434 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/421 (83%), Positives = 386/421 (91%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M+RGHWD + LEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNIYGLKDKSLRGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECY GLLG N+KLGYD+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P QM+ Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|227821623|ref|YP_002825593.1| NADH dehydrogenase I subunit F [Sinorhizobium fredii NGR234] gi|227340622|gb|ACP24840.1| NADH-quinone oxidoreductase chain F 1 [Sinorhizobium fredii NGR234] Length = 434 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/421 (82%), Positives = 385/421 (91%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M+RGHWD +LEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNIYGLKDKSLKGAMARGHWDGTKALLEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMAANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECY GLLG N+KLGYD+D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDVFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WYS FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYSSFGRPNNHGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHVN PCTVE++MSI F ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+P QM+ Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIDKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEQRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|163759536|ref|ZP_02166621.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283133|gb|EDQ33419.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea phototrophica DFL-43] Length = 435 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/425 (78%), Positives = 375/425 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ KSL +M+RGHWD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGVYDKSLKGAMARGHWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE++RERE+LQAA+DECY +GLLG NSKLGYD+D+ VHHGAGAYICGEETALLE Sbjct: 121 TYIYVRGEYMREREALQAAIDECYEAGLLGKNSKLGYDMDVYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGIGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+MSI F ELI+ HCGGIRGGWDNLLAVIPGGSSVP +P + Sbjct: 241 LFCVSGHVNTPCTVEEAMSIPFRELIDTHCGGIRGGWDNLLAVIPGGSSVPLVPGADIVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++ SGLGTAAVIVMD+STD++KAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 TPMDFDSLRDLKSGLGTAAVIVMDKSTDVVKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM+R+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI++FRP +E RIDQY Sbjct: 361 VMDRMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEMEARIDQYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|110633381|ref|YP_673589.1| NADH dehydrogenase I subunit F [Mesorhizobium sp. BNC1] gi|110284365|gb|ABG62424.1| NADH dehydrogenase subunit F [Chelativorans sp. BNC1] Length = 434 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/421 (79%), Positives = 375/421 (89%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG +SL +M+RGHWD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGQFDRSLHGAMARGHWDGTKAILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +DRPHYLVVNADESEPGTCKDRDI+RHEPHTL+EGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKAPTDRPHYLVVNADESEPGTCKDRDILRHEPHTLVEGCLIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECYA GLLG N+ G+D D+IVHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAHGLLGKNNIHGWDFDVIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FGRENN+GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRENNKGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 LFCISGHVNNPCTVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDSLRDLKSGLGTAAVIVMDKSTDIVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G A K EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RID++ Sbjct: 361 VMERLVRGEAHKHEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIDEFT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|116251471|ref|YP_767309.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. viciae 3841] gi|241204092|ref|YP_002975188.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115256119|emb|CAK07200.1| putative NADH-quinone oxidoreductase subunit F [Rhizobium leguminosarum bv. viciae 3841] gi|240857982|gb|ACS55649.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 434 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|222148279|ref|YP_002549236.1| NADH dehydrogenase I subunit F [Agrobacterium vitis S4] gi|221735267|gb|ACM36230.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4] Length = 434 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/421 (78%), Positives = 370/421 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PHTL+EGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLLEGCVIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY GLLG N+KLG+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYEYGLLGKNNKLGWDYDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE+M ITF ELIE+H GGIRGGWDNLLAVIPGG+S P + A + Sbjct: 241 LFMISGHVNKPCTVEETMGITFRELIERHAGGIRGGWDNLLAVIPGGASCPVVKAEDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+++ S GTAA+IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 VPMDFDGLRDVKSSFGTAAIIVMDKSTDIIKAIARLSQFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE RID Y Sbjct: 361 VMERMVKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEARIDDYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|209548868|ref|YP_002280785.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534624|gb|ACI54559.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 434 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|222085581|ref|YP_002544111.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter K84] gi|221723029|gb|ACM26185.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter K84] Length = 434 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG + KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGHKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GA+ Sbjct: 61 PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY +GLLG N+KLG+D D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKLGWDYDVYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+M ITF EL++KH GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNRPCTVEETMGITFRELVDKHAGGIRGGWDNLLAVIPGGASCPIVPAADIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+E+ S GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLREVKSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VLERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|190891291|ref|YP_001977833.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652] gi|190696570|gb|ACE90655.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli CIAT 652] Length = 434 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|86357243|ref|YP_469135.1| NADH dehydrogenase I subunit F [Rhizobium etli CFN 42] gi|86281345|gb|ABC90408.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN 42] Length = 434 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNRPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +MER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 LMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|49474182|ref|YP_032224.1| NADH dehydrogenase I subunit F [Bartonella quintana str. Toulouse] gi|49239686|emb|CAF26061.1| NADH dehydrogenase I, F subunit [Bartonella quintana str. Toulouse] Length = 435 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/425 (76%), Positives = 370/425 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD + I++KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLKDKSLKAAMSRGHWDGIKAIIDKGRDWIIDEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC +A+FA+GA+ Sbjct: 61 PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCALATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAAVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAVDECYDAGLLGKKTKYGHVCDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV+PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVIPTILRRGASWFSSIGRANNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPVVRGEDMVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRITAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVS+ +EG TICALGDAAAWPIQGLI+NFRP IE RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSEQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSVIQ 425 >gi|319898887|ref|YP_004158980.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73] gi|319402851|emb|CBI76402.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73] Length = 435 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/425 (76%), Positives = 368/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + KSL +M RGHWDN I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDKSLKGAMLRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQ A+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQVAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGWDNLLAVIPGG+S P + M Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWDNLLAVIPGGASCPIVRGEDMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDIGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR IE+RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAIQ 425 >gi|163868368|ref|YP_001609577.1| NADH dehydrogenase I subunit F [Bartonella tribocorum CIP 105476] gi|161018024|emb|CAK01582.1| NADH dehydrogenase I chain F [Bartonella tribocorum CIP 105476] Length = 435 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/425 (75%), Positives = 372/425 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLTD+DRIFTN+YGL+ KSL +M RGHW+ + +I++KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLTDKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEIIDKGRDWIIDEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQ AVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQTAVDECYEAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT VIVMD++TDIIKAIWR+S F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKTTDIIKAIWRISAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNVVQ 425 >gi|49475653|ref|YP_033694.1| NADH dehydrogenase I subunit F [Bartonella henselae str. Houston-1] gi|49238460|emb|CAF27688.1| NADH dehydrogenase I, F subunit [Bartonella henselae str. Houston-1] Length = 435 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/425 (75%), Positives = 371/425 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL+ KSL ++SRGHWD I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGLKDKSLKAAISRGHWDGTRAIIDKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCV+A+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVLATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQAAVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFRP IE RID Y Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNVVQ 425 >gi|319408584|emb|CBI82239.1| NADH dehydrogenase I chain F [Bartonella schoenbuchensis R1] Length = 435 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/425 (75%), Positives = 370/425 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLTD+DRIFTN+YGL+ KSL +M RGHWD I+EKGRDWI++EVK SGLRGRGGAGF Sbjct: 1 MLTDKDRIFTNIYGLKDKSLKGAMLRGHWDGTKAIVEKGRDWIVDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FAIGA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAIGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQAA+DECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQAAIDECYDAGLLGKKTKCGHVCDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPT VNNVESIAV+PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTIVNNVESIAVIPTILRRGASWFSSIGRSNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++++GS GT VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AVMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR IE+RID Y Sbjct: 361 LLERMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIEQRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNVVQ 425 >gi|304391405|ref|ZP_07373347.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130] gi|303295634|gb|EFL89992.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130] Length = 434 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/419 (77%), Positives = 367/419 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL +MSRGHW + + GRDW+IN+ KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLHDKSLKGAMSRGHWSETKQFIANGRDWVINQTKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S+RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCV+A FA+GAH Sbjct: 61 PTGLKWSFMPKEESERPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVLAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE++RERE+L+AA+DECY +GLLG N+K G+D DI V HGAGAYICGEETALLE Sbjct: 121 CYIYVRGEYMREREALEAAIDECYEAGLLGKNNKNGWDYDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES+AVVPTILRRG W++GFG ENNRGTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESVAVVPTILRRGPEWFAGFGAENNRGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE+MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSV +PA QM Sbjct: 241 LFCISGHVERPCTVEEAMSIPFRELIEKHCGGIRGGWDNLLAVIPGGSSVRMVPAEQMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L ++ SGLGTAAVIVMD+ TDII+AI RL+ FYKHESCGQCTPCREGTGWM R Sbjct: 301 TPMDFDSLSKLKSGLGTAAVIVMDKETDIIRAIARLAAFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+V+G AQKREID+L++V+K IEG TICALGDAAAWPIQGLI +FRP +E+RID+Y Sbjct: 361 VMERMVEGRAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLITHFRPEMEKRIDEY 419 >gi|319405693|emb|CBI79316.1| NADH dehydrogenase I chain F [Bartonella sp. AR 15-3] Length = 435 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/425 (76%), Positives = 369/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL ++ RGHWD I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR IE+RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDNYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAVQ 425 >gi|121601753|ref|YP_989075.1| NADH dehydrogenase I subunit F [Bartonella bacilliformis KC583] gi|120613930|gb|ABM44531.1| NADH dehydrogenase (quinone), F subunit [Bartonella bacilliformis KC583] Length = 435 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/425 (75%), Positives = 367/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL ++SRGHWDN I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDRSLKGAISRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +G LG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYDAGFLGKKTKHGHACDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EES+ I+F ELIEKH GGIRGGW+NLLAVIPGG+S P + + Sbjct: 241 LFMISGHVNAPCTFEESLGISFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDIMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR IE RID Y Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|114707373|ref|ZP_01440270.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi HTCC2506] gi|114537254|gb|EAU40381.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi HTCC2506] Length = 434 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/421 (76%), Positives = 373/421 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M RGH+D +I+EKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLRDKSLKAAMKRGHFDGTKEIVEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKESAGRPHYLVVNADESEPGTCKDREIMRNDPFTLIEGCLIAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE+IRERE+LQ AVDECY GLLG+++K G+D DI+VHHGAGAYICGEETALLE Sbjct: 121 AYIYIRGEYIREREALQKAVDECYEEGLLGADNKCGWDFDIVVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA W++G GRENN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAGWFAGIGRENNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE+MSI+F ELI+KHCGG+RGGWDNLLAVIPGGSSVP +PA + Sbjct: 241 LFCISGHVEQPCTVEEAMSISFRELIDKHCGGVRGGWDNLLAVIPGGSSVPLVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+DGLK++ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDGLKDIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V G A+K EID+L +V+K +EG TICALGDAAAWPIQGL+++FRP IE RID++ Sbjct: 361 VMERMVVGNAKKSEIDMLLQVTKQVEGHTICALGDAAAWPIQGLMRHFRPEIERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|319404254|emb|CBI77847.1| NADH dehydrogenase I chain F [Bartonella rochalimae ATCC BAA-1498] Length = 435 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/425 (75%), Positives = 368/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + KSL ++ RGHWD I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR IE RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAVQ 425 >gi|319407262|emb|CBI80901.1| NADH dehydrogenase I chain F [Bartonella sp. 1-1C] Length = 435 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/425 (75%), Positives = 367/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + KSL ++ RGHWD I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPIVRGEDMIN 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK IEG TICALGDAAAWPIQGLI+NFR IE RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQIEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAVQ 425 >gi|240850588|ref|YP_002971988.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup] gi|240267711|gb|ACS51299.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup] Length = 435 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/425 (74%), Positives = 372/425 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M RGHW+ + ++++KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEMIDKGRDWIIDEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQAAVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT E+++ ++F ELIEKH GG+RGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGVRGGWNNLLAVIPGGASCPVVRGEDMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNVVQ 425 >gi|256159529|ref|ZP_05457297.1| NADH dehydrogenase I subunit F [Brucella ceti M490/95/1] gi|256254816|ref|ZP_05460352.1| NADH dehydrogenase I subunit F [Brucella ceti B1/94] gi|261221997|ref|ZP_05936278.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|265997961|ref|ZP_06110518.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] gi|260920581|gb|EEX87234.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|262552429|gb|EEZ08419.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] Length = 435 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/425 (75%), Positives = 366/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAVGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|83951746|ref|ZP_00960478.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens ISM] gi|83836752|gb|EAP76049.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens ISM] Length = 431 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/417 (76%), Positives = 366/417 (87%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ +SL + +RGHWD IL KGRDWII+ +KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRSLKGAQARGHWDGTAGILAKGRDWIIDNMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E+GS LGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDALREVGSSLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI Sbjct: 361 RVMDRLVKGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRI 417 >gi|148559285|ref|YP_001258785.1| NADH dehydrogenase I subunit F [Brucella ovis ATCC 25840] gi|254701575|ref|ZP_05163403.1| NADH dehydrogenase I subunit F [Brucella suis bv. 5 str. 513] gi|254706978|ref|ZP_05168806.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M163/99/10] gi|254709915|ref|ZP_05171726.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis B2/94] gi|254713916|ref|ZP_05175727.1| NADH dehydrogenase I subunit F [Brucella ceti M644/93/1] gi|254717026|ref|ZP_05178837.1| NADH dehydrogenase I subunit F [Brucella ceti M13/05/1] gi|254718916|ref|ZP_05180727.1| NADH dehydrogenase I subunit F [Brucella sp. 83/13] gi|256031408|ref|ZP_05445022.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M292/94/1] gi|256369239|ref|YP_003106747.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915] gi|261218833|ref|ZP_05933114.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261314441|ref|ZP_05953638.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261317461|ref|ZP_05956658.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261321668|ref|ZP_05960865.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261752128|ref|ZP_05995837.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|265983903|ref|ZP_06096638.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|265988497|ref|ZP_06101054.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|294852164|ref|ZP_06792837.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026] gi|306838236|ref|ZP_07471088.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653] gi|306841955|ref|ZP_07474632.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2] gi|306843744|ref|ZP_07476343.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1] gi|148370542|gb|ABQ60521.1| NADH oxidoreductase (quinone), f subunit [Brucella ovis ATCC 25840] gi|255999399|gb|ACU47798.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915] gi|260923922|gb|EEX90490.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261294358|gb|EEX97854.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261296684|gb|EEY00181.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261303467|gb|EEY06964.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261741881|gb|EEY29807.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|264660694|gb|EEZ30955.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|264662495|gb|EEZ32756.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|294820753|gb|EFG37752.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026] gi|306275935|gb|EFM57648.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1] gi|306287946|gb|EFM59357.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2] gi|306406680|gb|EFM62907.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653] Length = 435 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/425 (75%), Positives = 366/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|15888604|ref|NP_354285.1| NADH dehydrogenase I subunit F [Agrobacterium tumefaciens str. C58] gi|15156324|gb|AAK87070.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens str. C58] Length = 434 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/419 (75%), Positives = 366/419 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL+ KSL M+RGHWD +I+EKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGLKDKSLKGVMARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDYDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHV PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P + M+ Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++E+ S GT +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419 >gi|256060919|ref|ZP_05451077.1| NADH dehydrogenase I subunit F [Brucella neotomae 5K33] gi|261324919|ref|ZP_05964116.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261300899|gb|EEY04396.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] Length = 435 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/425 (75%), Positives = 366/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTI+RRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTIMRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|161618771|ref|YP_001592658.1| NADH dehydrogenase I subunit F [Brucella canis ATCC 23365] gi|163843080|ref|YP_001627484.1| NADH dehydrogenase I subunit F [Brucella suis ATCC 23445] gi|254704122|ref|ZP_05165950.1| NADH dehydrogenase I subunit F [Brucella suis bv. 3 str. 686] gi|260566629|ref|ZP_05837099.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|261754788|ref|ZP_05998497.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] gi|161335582|gb|ABX61887.1| NADH-quinone oxidoreductase, F subunit [Brucella canis ATCC 23365] gi|163673803|gb|ABY37914.1| NADH-quinone oxidoreductase, F subunit [Brucella suis ATCC 23445] gi|260156147|gb|EEW91227.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|261744541|gb|EEY32467.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] Length = 435 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/425 (75%), Positives = 365/425 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|225627304|ref|ZP_03785341.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo] gi|260168542|ref|ZP_05755353.1| NADH dehydrogenase I subunit F [Brucella sp. F5/99] gi|261758015|ref|ZP_06001724.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99] gi|225617309|gb|EEH14354.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo] gi|261737999|gb|EEY25995.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99] Length = 435 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/425 (75%), Positives = 366/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPEQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|17987436|ref|NP_540070.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str. 16M] gi|62289756|ref|YP_221549.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 1 str. 9-941] gi|82699684|ref|YP_414258.1| NADH dehydrogenase I subunit F [Brucella melitensis biovar Abortus 2308] gi|189024001|ref|YP_001934769.1| NADH dehydrogenase I subunit F [Brucella abortus S19] gi|225852323|ref|YP_002732556.1| NADH dehydrogenase I subunit F [Brucella melitensis ATCC 23457] gi|237815243|ref|ZP_04594241.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308 A] gi|254689063|ref|ZP_05152317.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 6 str. 870] gi|254693545|ref|ZP_05155373.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 3 str. Tulya] gi|254697197|ref|ZP_05159025.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 2 str. 86/8/59] gi|254730093|ref|ZP_05188671.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 4 str. 292] gi|256044486|ref|ZP_05447390.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str. Rev.1] gi|256113342|ref|ZP_05454200.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 3 str. Ether] gi|256257312|ref|ZP_05462848.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 9 str. C68] gi|256264178|ref|ZP_05466710.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|260545494|ref|ZP_05821235.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260563840|ref|ZP_05834326.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260754561|ref|ZP_05866909.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260757782|ref|ZP_05870130.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260761607|ref|ZP_05873950.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260883588|ref|ZP_05895202.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|261213810|ref|ZP_05928091.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|265990910|ref|ZP_06103467.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|265994748|ref|ZP_06107305.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] gi|297248161|ref|ZP_06931879.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5 str. B3196] gi|17983129|gb|AAL52334.1| NADH-quinone oxidoreductase chain f [Brucella melitensis bv. 1 str. 16M] gi|62195888|gb|AAX74188.1| NuoF, NADH dehydrogenase I, F subunit [Brucella abortus bv. 1 str. 9-941] gi|82615785|emb|CAJ10783.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella melitensis biovar Abortus 2308] gi|189019573|gb|ACD72295.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella abortus S19] gi|225640688|gb|ACO00602.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis ATCC 23457] gi|237790080|gb|EEP64290.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308 A] gi|260096901|gb|EEW80776.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260153856|gb|EEW88948.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260668100|gb|EEX55040.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260672039|gb|EEX58860.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260674669|gb|EEX61490.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260873116|gb|EEX80185.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|260915417|gb|EEX82278.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|262765861|gb|EEZ11650.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] gi|263001694|gb|EEZ14269.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|263094396|gb|EEZ18241.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|297175330|gb|EFH34677.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5 str. B3196] gi|326408830|gb|ADZ65895.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella melitensis M28] gi|326538546|gb|ADZ86761.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis M5-90] Length = 435 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/425 (75%), Positives = 365/425 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+G H Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGVHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|149202664|ref|ZP_01879636.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035] gi|149143946|gb|EDM31980.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035] Length = 431 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/417 (76%), Positives = 365/417 (87%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL +++RGHWD KIL+ GRDWI+N++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQTAIDEAYAAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+SGFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSGFGRPNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEFMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 417 >gi|325292639|ref|YP_004278503.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3] gi|325060492|gb|ADY64183.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3] Length = 434 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/419 (75%), Positives = 365/419 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL+ KSL +RGHWD +I+EKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGLKDKSLKGVRARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHV PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P + M+ Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++E+ S GT +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419 >gi|23501694|ref|NP_697821.1| NADH dehydrogenase I subunit F [Brucella suis 1330] gi|23347616|gb|AAN29736.1| NADH dehydrogenase I, F subunit [Brucella suis 1330] Length = 435 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/425 (75%), Positives = 364/425 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKG DWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGCDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|239831691|ref|ZP_04680020.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium LMG 3301] gi|239823958|gb|EEQ95526.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium LMG 3301] Length = 435 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/425 (75%), Positives = 363/425 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDRSLKGAMARGHWDNTSGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG +K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDIFVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + M Sbjct: 241 LFQISGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG+++ S GT +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|254469558|ref|ZP_05082963.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062] gi|211961393|gb|EEA96588.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062] Length = 433 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/419 (76%), Positives = 361/419 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YGL L + RG W +I+EKGRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLNDSDRIFTNIYGLHDWGLEGARQRGSWSGTKEIIEKGRDWIIDEMKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAV PTIL+RG +W+SG GRENN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVAPTILKRGGAWFSGIGRENNAGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+M I+F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +R Sbjct: 241 LFCVSGHVNKPCTVEEAMGISFKELIEKHCGGIRGGWDNLLAVIPGGSSVPCVKGEDIRD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+DGL+E+GS LGTAAVIVMD STDIIKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDGLREVGSSLGTAAVIVMDNSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+VKG + EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RIDQY Sbjct: 361 VMERMVKGESSYDEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEDRIDQY 419 >gi|328543691|ref|YP_004303800.1| Nadh dehydrogenase i chain f transmembrane protein [polymorphum gilvum SL003B-26A1] gi|326413435|gb|ADZ70498.1| Nadh dehydrogenase i chain f transmembrane protein [Polymorphum gilvum SL003B-26A1] Length = 433 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/419 (75%), Positives = 361/419 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL L + RGHWDN +++KGRDWI+ E+K+SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGLHDWGLEGARKRGHWDNTKALIDKGRDWIVEEMKSSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKASDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGRNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDNLLAVIPGGSSVPCL A Q++ Sbjct: 241 LFCISGHVNRPCTVEEELGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCLTADQVKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 VPMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM+R+V+G A K EID+L+ V+K +EG TICALGDAAAWPIQGLIKNFR +IEERID Y Sbjct: 361 VMDRMVQGNASKEEIDMLFTVTKQVEGHTICALGDAAAWPIQGLIKNFRHVIEERIDDY 419 >gi|84502613|ref|ZP_01000732.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis HTCC2597] gi|84389008|gb|EAQ01806.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis HTCC2597] Length = 430 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/418 (76%), Positives = 369/418 (88%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + RGHWD I++KGRDWII+++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGMHDRTLQGARDRGHWDGTADIIKKGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG+N+ K G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGANAAKSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGRENN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRENNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI Sbjct: 361 MRVMDRLVKGEASVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRI 418 >gi|254465162|ref|ZP_05078573.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium Y4I] gi|206686070|gb|EDZ46552.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium Y4I] Length = 432 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/418 (76%), Positives = 366/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + +RGHWD I+EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKARGHWDGTAGIIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y GLLG+N+ G+D DI +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDQGLLGNNAAGSGWDFDIFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A+MD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DALMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIKNFREEIEDRI 418 >gi|153009746|ref|YP_001370961.1| NADH dehydrogenase I subunit F [Ochrobactrum anthropi ATCC 49188] gi|151561634|gb|ABS15132.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum anthropi ATCC 49188] Length = 435 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/425 (74%), Positives = 365/425 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG +K G+D+D++V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDVLVSHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC +EE + I F +LIEKH GGIRGGWDNLLAVIPGG+S P + M Sbjct: 241 LFQISGHVNTPCVIEEGLGIPFRDLIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG+++ S GT +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RNAVQ 425 >gi|149914585|ref|ZP_01903115.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b] gi|149811378|gb|EDM71213.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b] Length = 431 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/417 (75%), Positives = 363/417 (87%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ +SL +M+RGHWD KIL+ GR+WII+++KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRSLKGAMARGHWDGTAKILQNGREWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASYAMKAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLIGKNACKSGYDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV PTILRRG W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAMAGLYGCPTTVNNVESIAVAPTILRRGPEWFAGFGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+ISGHVN PC VEESMSI+F+ELI+KHCGGIRGGW NL AVIPGGSSVPC+ MR Sbjct: 241 KIFAISGHVNAPCVVEESMSISFEELIDKHCGGIRGGWSNLKAVIPGGSSVPCVHGENMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MD+D LKE GS LGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 417 >gi|85703201|ref|ZP_01034305.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217] gi|85672129|gb|EAQ26986.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217] Length = 431 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/417 (76%), Positives = 363/417 (87%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL +++RGHWD KIL+ GRDWI+N++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQVAIDEAYAAGLVGKNACKSGWDFDIYLAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEHMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+I+AIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIRAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMDRLVRGDAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 417 >gi|90417838|ref|ZP_01225750.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337510|gb|EAS51161.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans SI85-9A1] Length = 435 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/421 (75%), Positives = 363/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL+ KSL +M RGH+D + I+ KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNIYGLRDKSLKGAMKRGHFDGIADIIGKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADESEPGTCKDR+IMR++P TLIEGCVIA FA+GA+ Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVINADESEPGTCKDREIMRNDPFTLIEGCVIAGFAMGANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+IRER++LQ A+DECY +GLLG ++K G+D DIIVHHGAGAYICGEETALLE Sbjct: 121 CYIYVRGEYIRERQALQRAIDECYEAGLLGRDNKCGWDYDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG W++G GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFAGLGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV PCTVEE M I F ELIEKHCGG+RGGWDNLLAVIPGGSSVP +PA + Sbjct: 241 LYCISGHVEQPCTVEEEMGIPFRELIEKHCGGVRGGWDNLLAVIPGGSSVPLVPAADIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+DGL+E+ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDGLREIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+ G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR IE RID Y Sbjct: 361 VMERMATGNAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLVRHFRAEIERRIDDYS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|259418795|ref|ZP_05742712.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp. TrichCH4B] gi|259345017|gb|EEW56871.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp. TrichCH4B] Length = 432 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|118590033|ref|ZP_01547437.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM 12614] gi|118437530|gb|EAV44167.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM 12614] Length = 433 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/419 (75%), Positives = 360/419 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL L + RG WDN +++KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLIDKGRDWIIQEMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A +A+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGYAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSALGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN P T EE + I+F E+I+KHCGGIRGGWDNLLAVIPGGSSVPCL A Q++ Sbjct: 241 LFCVSGHVNKPSTFEEELGISFAEMIDKHCGGIRGGWDNLLAVIPGGSSVPCLTAEQIKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+V+G + EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y Sbjct: 361 VMERMVRGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419 >gi|84516731|ref|ZP_01004089.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis SKA53] gi|84509199|gb|EAQ05658.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis SKA53] Length = 428 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/419 (76%), Positives = 360/419 (85%), Gaps = 1/419 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + +RGHWD I++KGRDWI+NE+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLKGAQARGHWDGTADIIKKGRDWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE YA+GL+G N+ K G+D +I + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYAAGLVGKNACKSGWDFEIYLTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG +W+SGFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGAWFSGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEEMSIPFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVM RLV+G A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 361 RVMARLVEGNASVDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRIKH 419 >gi|260434174|ref|ZP_05788145.1| NADH oxidoreductase (quinone), f subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260418002|gb|EEX11261.1| NADH oxidoreductase (quinone), f subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 432 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/418 (75%), Positives = 364/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD ++ KGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTADLIAKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ ++GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRNDLGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A+ EID+L+EV+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLFEVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|163738803|ref|ZP_02146217.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis BS107] gi|161388131|gb|EDQ12486.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis BS107] Length = 432 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/418 (75%), Positives = 366/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD I+EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+++HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVLLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|83953906|ref|ZP_00962627.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1] gi|83841851|gb|EAP81020.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1] Length = 431 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/417 (76%), Positives = 362/417 (86%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD IL+ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P QMR Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|99080589|ref|YP_612743.1| NADH dehydrogenase I subunit F [Ruegeria sp. TM1040] gi|99036869|gb|ABF63481.1| NADH-quinone oxidoreductase F subunit [Ruegeria sp. TM1040] Length = 432 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDI+KAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|319782986|ref|YP_004142462.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168874|gb|ADV12412.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 434 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/421 (75%), Positives = 366/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL+ +M+RG WDN I+ KGR+WI+NE+KASGLRGRGGAGF Sbjct: 1 MLGDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQ A++E Y + L+G N+ GYD DI +HHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQRAIEEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+ Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G AQKREID+L +V+K IEG TICALGDAAAWPIQGL+++FR +E RID++ Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|260462235|ref|ZP_05810479.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum WSM2075] gi|259032095|gb|EEW33362.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum WSM2075] Length = 434 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/421 (75%), Positives = 363/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF N+YGL KSL+ +M+RG WDN I+ KGR+WI+NE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFNNIYGLFDKSLAGAMARGAWDNTPGIIAKGREWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDRDI+R++PHTL+EG IA FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVVNADESEPGTCKDRDILRNDPHTLVEGSFIAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQ A+DE Y + L+G N+ GYD DI +HHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+ Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR +E RID++ Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|126740382|ref|ZP_01756070.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6] gi|126718518|gb|EBA15232.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6] Length = 432 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/418 (76%), Positives = 362/418 (86%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + +RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLKGAQTRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|84686436|ref|ZP_01014330.1| NADH-quinone oxidoreductase, F subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665619|gb|EAQ12095.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium HTCC2654] Length = 433 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/418 (74%), Positives = 366/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + RGHWD I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLKGAQMRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++ FGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFASFGRKNNEGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A+MD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAVMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|56697615|ref|YP_167984.1| NADH dehydrogenase I subunit F [Ruegeria pomeroyi DSS-3] gi|56679352|gb|AAV96018.1| NADH-quinone oxidoreductase, F subunit [Ruegeria pomeroyi DSS-3] Length = 432 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/418 (75%), Positives = 367/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L +M+RGHWD I+ KGRDWII ++K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLKGAMARGHWDGTAGIIGKGRDWIIQQMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ K G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAEPEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418 >gi|163741486|ref|ZP_02148877.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis 2.10] gi|161385220|gb|EDQ09598.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis 2.10] Length = 432 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/418 (75%), Positives = 364/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD I+EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAA+IVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAIIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|83942667|ref|ZP_00955128.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36] gi|83846760|gb|EAP84636.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36] Length = 431 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/417 (75%), Positives = 361/417 (86%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD IL+ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P QMR Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAA+IVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAIIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|255262502|ref|ZP_05341844.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62] gi|255104837|gb|EET47511.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62] Length = 429 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ +SL + RGHWD KI++ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNIYGMHDRSLKGAQKRGHWDGTAKIIKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKTGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ M+ Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEHMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGDADPEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418 >gi|86137594|ref|ZP_01056171.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193] gi|85825929|gb|EAQ46127.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193] Length = 432 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/418 (75%), Positives = 362/418 (86%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + +RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLKGAQARGHWDGTSGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418 >gi|126736062|ref|ZP_01751806.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2] gi|126714619|gb|EBA11486.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2] Length = 428 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/417 (76%), Positives = 360/417 (86%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D++RIFTNLYG+ ++L + +RGHWD I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLKDENRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DECYA+GL+G N+ K G+D DI + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDECYAAGLVGPNAAKSGWDFDIYLTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++G GR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFAGMGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLV+G A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 361 RVMARLVEGNASVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRI 417 >gi|254475856|ref|ZP_05089242.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11] gi|214030099|gb|EEB70934.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11] Length = 432 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/418 (75%), Positives = 363/418 (86%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDNGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418 >gi|254512379|ref|ZP_05124446.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae bacterium KLH11] gi|221536090|gb|EEE39078.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae bacterium KLH11] Length = 433 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/418 (75%), Positives = 364/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD ++ KGRDWII +K SGLRGRGGAGF Sbjct: 2 MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTAGLINKGRDWIIQTMKDSGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 62 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 122 CYIYLRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 181 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 241 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F++LIE HCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 242 KLFAISGHVNNPCVVEEAMSISFEDLIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 301 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 302 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 361 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 362 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 419 >gi|13471402|ref|NP_102968.1| NADH dehydrogenase I subunit F [Mesorhizobium loti MAFF303099] gi|14022144|dbj|BAB48754.1| NADH-ubiquinone dehydrogenase chain F 1 [Mesorhizobium loti MAFF303099] Length = 434 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/421 (74%), Positives = 364/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL+ +M+RG WDN I+ KGR+WI+NE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQ A+DE Y + L+G + GYD D+ +HHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKGNTSGYDFDVYMHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+ Sbjct: 241 LFCVSGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR +E RID++ Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|89071182|ref|ZP_01158373.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus HTCC2516] gi|89043278|gb|EAR49504.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus HTCC2516] Length = 428 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/420 (75%), Positives = 364/420 (86%), Gaps = 2/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++ KGR+WII E+K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLAGAKKRGHWDGTAGLIGKGREWIIEEMKGSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAVSGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGDAAVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKH 420 >gi|254501883|ref|ZP_05114034.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii DFL-11] gi|222437954|gb|EEE44633.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii DFL-11] Length = 433 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/419 (74%), Positives = 356/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL L + RG WDN +L+KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLLDKGRDWIIQEMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG W++ GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFASLGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN P T EE + + F E+I+KHCGGIRGGWDNLLAVIPGGSSVPC A +++ Sbjct: 241 LFCVSGHVNQPATFEEELGVPFSEMIDKHCGGIRGGWDNLLAVIPGGSSVPCCTADEIKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ MGSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGMGSGLGTAAVIVMDKSTDVIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+VKG + EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y Sbjct: 361 VMERMVKGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419 >gi|126729558|ref|ZP_01745371.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37] gi|126709677|gb|EBA08730.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37] Length = 432 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/418 (75%), Positives = 363/418 (86%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + RGHWD ++EKGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLHDQDRIFTNLYGMHDRTLDGAKKRGHWDGTAGLIEKGRDWIIQEMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+ ASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLFASFAMQAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ G+D +I +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQRAIDEAYDAGLVGPNAAGSGWDFEIFLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ +M+ Sbjct: 241 KLFAVSGHVNKPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A + EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEADEEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418 >gi|159043865|ref|YP_001532659.1| NADH dehydrogenase subunit I F [Dinoroseobacter shibae DFL 12] gi|157911625|gb|ABV93058.1| NADH-quinone oxidoreductase, F subunit [Dinoroseobacter shibae DFL 12] Length = 433 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L+ + RGHWD DK+++ GRD I+ +K SGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLAGARKRGHWDGTDKLIQMGRDDIVKIMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGE+IRERE+LQAA+DE Y +GLLG N+ G+D D+ + HGAGAYICGEETAL+ Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYEAGLLGKNAAGSGWDFDLYLTHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAQFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418 >gi|163746205|ref|ZP_02153564.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45] gi|161380950|gb|EDQ05360.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45] Length = 431 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/417 (75%), Positives = 359/417 (86%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ ++L + SRGHWD I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGMHDRTLKGAQSRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N SK G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYLRGEYIREREALQTAIDEAYEAGLVGKNASKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRANNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSIGFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|110680462|ref|YP_683469.1| NADH dehydrogenase I subunit F [Roseobacter denitrificans OCh 114] gi|109456578|gb|ABG32783.1| NADH-quinone oxidoreductase chain F [Roseobacter denitrificans OCh 114] Length = 431 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/417 (74%), Positives = 360/417 (86%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD D I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|163732058|ref|ZP_02139504.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149] gi|161394356|gb|EDQ18679.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149] Length = 431 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/417 (74%), Positives = 360/417 (86%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD D I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P QM+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWGNLKAVIPGGSSVPMIPGAQMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|254452337|ref|ZP_05065774.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 238] gi|198266743|gb|EDY91013.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 238] Length = 428 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/417 (75%), Positives = 361/417 (86%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + +RGHWD I++KGR WI++++KASGLRGRGGAGF Sbjct: 2 MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRAWIVDQMKASGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 62 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DECY +G++G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYDAGMVGKNACKSGWDFDIYLHHGAGAYICGEETALL 181 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIA VPTILRRG W++GFGR NN GT Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIATVPTILRRGPDWFAGFGRPNNSGT 241 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL++ISGHVN PC VEESMSI F+ELIEKHCGG+RGGWDNL AVIPGGSSVP + MR Sbjct: 242 KLYAISGHVNNPCVVEESMSIPFEELIEKHCGGVRGGWDNLKAVIPGGSSVPMVRGENMR 301 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+DGLKE GS LGTAAVIVMD++TD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 302 DAIMDFDGLKEKGSSLGTAAVIVMDKNTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 361 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLVKG A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 362 RVMDRLVKGDADVSEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRI 418 >gi|323138150|ref|ZP_08073223.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC 49242] gi|322396612|gb|EFX99140.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC 49242] Length = 434 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/420 (75%), Positives = 364/420 (86%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+D DRIFTNLYGL +SL+ + RG WDN +L KGRD II EVKASGLRGRGGAGF Sbjct: 1 MLSDSDRIFTNLYGLGDRSLAGARKRGQWDNTKALLAKGRDKIIEEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK V RPHYLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH Sbjct: 61 STGLKWSFMPKDVDPRRPHYLVINADESEPGTCKDREIMRNDPHTLVEGALVASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFI ERE+LQ AVDE YA+ L+G N+ GY D+ VHHGAGAYICGEETAL+ Sbjct: 121 ACYIYVRGEFIAEREALQRAVDEAYAANLIGKNNVHGYPFDLYVHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG +W++G G+ NN GT Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGPNWFAGIGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLFSISGHVN PC VEE+MSI+F ELI+ HCGG+RGGWDNLLAVIPGGSSV C+PA Q+ Sbjct: 241 KLFSISGHVNRPCNVEEAMSISFRELIDTHCGGVRGGWDNLLAVIPGGSSVRCVPAHQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMY 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V+G A K+EID+L++VSK IEG TICALGDAAAWPIQGLI +FR +IE+RIDQY Sbjct: 361 RVVQRMVEGRANKKEIDMLFDVSKQIEGHTICALGDAAAWPIQGLITHFRDVIEQRIDQY 420 >gi|254486414|ref|ZP_05099619.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101] gi|214043283|gb|EEB83921.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101] Length = 431 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/417 (74%), Positives = 358/417 (85%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD IL+ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMQANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P QM+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWSNLKAVIPGGSSVPMIPGAQMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGDANPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|254461305|ref|ZP_05074721.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium HTCC2083] gi|206677894|gb|EDZ42381.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae bacterium HTCC2083] Length = 433 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/418 (74%), Positives = 361/418 (86%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + +RGHWD I++KGRDW+I+++KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAAIIKKGRDWVIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGI+GGWDNL AVIPGGSSVPC+ +MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIKGGWDNLKAVIPGGSSVPCVRGEKMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+D L+ ++GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DATMDFDYLRNDLGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVMERLV G A EID+L++V+K +EG TICALGDAAAWPIQGLI NFR IE+RI Sbjct: 361 MRVMERLVHGNADPSEIDMLWDVTKQVEGHTICALGDAAAWPIQGLINNFRDEIEDRI 418 >gi|254437215|ref|ZP_05050709.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 307] gi|198252661|gb|EDY76975.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 307] Length = 428 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/417 (75%), Positives = 358/417 (85%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + +RGHWD I++KGR+WII+ +KASGLRGRGGAGF Sbjct: 2 MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGREWIIDNMKASGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 62 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DECY +G++G N SK G+D DI + HGAGAYICGEETALL Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYEAGMVGKNASKSGWDFDIYLVHGAGAYICGEETALL 181 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG+ W++GFGR NN GT Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSDWFAGFGRPNNAGT 241 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEESMSI F+ELIEKHC GIRGGW NL AVIPGG+SVP + MR Sbjct: 242 KLFAISGHVNNPCVVEESMSIPFEELIEKHCDGIRGGWGNLKAVIPGGASVPMVRGENMR 301 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D LKE GS LGTAAVIVMD+ TD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 302 DAIMDFDALKEKGSSLGTAAVIVMDKDTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 361 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVMERLVKG A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 362 RVMERLVKGDADVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRI 418 >gi|126727150|ref|ZP_01742987.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium HTCC2150] gi|126703578|gb|EBA02674.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium HTCC2150] Length = 433 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/419 (73%), Positives = 361/419 (86%), Gaps = 1/419 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L+ + +RGHWD I++KGRDWI++E+KASGLRGRGGAGF Sbjct: 3 MLADKDRIFTNLYGMHDRTLAGAKARGHWDGTAAIIKKGRDWIVDEMKASGLRGRGGAGF 62 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG ++ASFA+ A+ Sbjct: 63 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALVASFAMNANT 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE+LQ A+DE YA GLLG N+ K G+D D+ +HHGAGAYICGEETALL Sbjct: 123 CYIYIRGEFIREREALQNAIDEAYADGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALL 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG+SW+ GFGR+NN GT Sbjct: 183 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSSWFKGFGRDNNAGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSIT EL++KHCGG+RGGW NL AVIPGGSSVP LPA + Sbjct: 243 KLFAISGHVNNPCVVEEAMSITLPELLDKHCGGVRGGWGNLKAVIPGGSSVPLLPADICK 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 303 DAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 363 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKH 421 >gi|158423296|ref|YP_001524588.1| NADH dehydrogenase I subunit F [Azorhizobium caulinodans ORS 571] gi|158330185|dbj|BAF87670.1| NADH-quinone oxidoreductase F subunit protein [Azorhizobium caulinodans ORS 571] Length = 433 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/419 (73%), Positives = 354/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + L ++ RG+WD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGYEDSGLKGALKRGNWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH Sbjct: 61 STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE L+AA+DE Y +GL+G N+ GY D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYVRERERLEAAIDEAYDAGLIGKNNIHGYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV P ILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPEILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF I GHVN PC VE++MSITF EL+EKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 LFGILGHVNTPCVVEDAMSITFRELVEKHGGGIRGGWDNLLAIIPGGASCPVVPAAACED 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I+D+DGL+ + S GTA V+VMD+STDI++AI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 LILDFDGLRAVKSSFGTAGVLVMDKSTDIVRAIARISYFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ R+ +G AQKREID L EV+ IEG TICALGDAAAWP+QGLI+NFR IE+RIDQY Sbjct: 361 VLNRMAEGRAQKREIDQLLEVTTQIEGHTICALGDAAAWPVQGLIRNFRHEIEKRIDQY 419 >gi|310816709|ref|YP_003964673.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25] gi|308755444|gb|ADO43373.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25] Length = 437 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/432 (73%), Positives = 358/432 (82%), Gaps = 15/432 (3%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTN+YG +SL+ + RGH+D I+ KGRDWI+NE+KASGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNIYGQHDRSLAGAQMRGHFDGTAGIIAKGRDWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK SDRP YLVVNADESEPGTCKDR+I+RHEP LIEGC++ASFAI AH Sbjct: 61 STGLKWSFMPKD-SDRPAYLVVNADESEPGTCKDREILRHEPFALIEGCLVASFAINAHA 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+D CY +GLLG+N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 120 CYIYIRGEYIREREALQAAIDACYDAGLLGANAAGSGWDFDLYLHHGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV PTILRRGASW+SGFGR NN GT Sbjct: 180 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSGFGRPNNAGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHC-------------GGIRGGWDNLLAVIPG 286 KLF+ISGHVN PC VEE MSI F ELI++HC GGIRGGWDNL VIPG Sbjct: 240 KLFAISGHVNRPCIVEEEMSIPFRELIDRHCGGIRGGGGTARHCGGIRGGWDNLKGVIPG 299 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 GSSVP LPA M AIMD+D L+ SGLGTAAVIVMD+S DI+KAIWRLS FYKHESCG Sbjct: 300 GSSVPVLPASVMGEAIMDFDWLRAQQSGLGTAAVIVMDQSVDIVKAIWRLSKFYKHESCG 359 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 QCTPCREGTGWMMRVMERLV G A EID+L EV+K +EG TICALGDAAAWPIQGL++ Sbjct: 360 QCTPCREGTGWMMRVMERLVAGTADPAEIDMLIEVTKQVEGHTICALGDAAAWPIQGLVR 419 Query: 407 NFRPLIEERIDQ 418 +FRP IE R+ Q Sbjct: 420 HFRPEIEARLHQ 431 >gi|154248547|ref|YP_001419505.1| NADH dehydrogenase I subunit F [Xanthobacter autotrophicus Py2] gi|154162632|gb|ABS69848.1| NADH-quinone oxidoreductase, F subunit [Xanthobacter autotrophicus Py2] Length = 433 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/419 (73%), Positives = 356/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGLQ L + +RG+WD ILEKGRDWIINE+K SGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLQDFGLKGARARGNWDGTKAILEKGRDWIINEMKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH Sbjct: 61 STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+I ER+ LQAA+DE Y +GL+G ++ Y D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIFERKRLQAAIDEAYDAGLIGKSNIHDYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFS++GHVN PC VEE+MSI F EL++KH GG+RGGWDNLL +IPGG+S P +PA Q Sbjct: 241 LFSLAGHVNTPCVVEEAMSIPFRELVDKHGGGVRGGWDNLLGIIPGGASCPVIPAEQCAD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DG + + S LGTA V+VMD+STDIIKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 LIMDFDGTRAVKSSLGTAGVLVMDKSTDIIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ R+ +G AQKREID+L EV+ IEG TICALGDAAAWP+QGLI+++R +IEERIDQY Sbjct: 361 VVNRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHYRHVIEERIDQY 419 >gi|119384975|ref|YP_916031.1| NADH dehydrogenase I subunit F [Paracoccus denitrificans PD1222] gi|119374742|gb|ABL70335.1| NADH dehydrogenase subunit F [Paracoccus denitrificans PD1222] Length = 431 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/417 (73%), Positives = 354/417 (84%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL+ + RGHWD I+++GRD II+E+KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRERE+LQAA+DECY +GLLG N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ++GHVN PC VEE+MSI ELIEKH GGIRGGW NL AVIPGG+S P L A Q Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMDYDG++E+ S GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 NAIMDYDGMRELRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVMERLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 417 >gi|266651|sp|P29913|NQO1_PARDE RecName: Full=NADH-quinone oxidoreductase chain 1; AltName: Full=NADH dehydrogenase I, chain 1; AltName: Full=NDH-1, chain 1 gi|150598|gb|AAA25585.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 431 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/417 (73%), Positives = 354/417 (84%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL+ + RGHWD I+++GRD II+E+KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRERE+LQAA+DECY +GLLG N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ++GHVN PC VEE+MSI ELIEKH GGIRGGW NL AVIPGG+S P L A Q Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMDYDG++++ S GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 NAIMDYDGMRDVRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVMERLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 417 >gi|170742516|ref|YP_001771171.1| NADH dehydrogenase I subunit F [Methylobacterium sp. 4-46] gi|168196790|gb|ACA18737.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium sp. 4-46] Length = 433 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/419 (72%), Positives = 355/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYG L + RG WD +LE+GRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGFHSPGLDAARRRGAWDGTKFLLEQGRDWIIDEMKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE++ E+ +LQ AVDE Y + L+G ++ GY D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGPDNVHGYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV ILRRGA+W+SG GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAAWFSGIGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIAD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D++TDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVLDKTTDIVAAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419 >gi|89053670|ref|YP_509121.1| NADH dehydrogenase I subunit F [Jannaschia sp. CCS1] gi|88863219|gb|ABD54096.1| NADH dehydrogenase subunit F [Jannaschia sp. CCS1] Length = 431 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/418 (73%), Positives = 358/418 (85%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ +SL+ + RGHWD ++ GRD I+ +KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGMHDRSLAGAKQRGHWDGTKDLIGLGRDKIVEIMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y GLLG ++ K G+D D+ + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEDGLLGKDAAKSGWDFDLYLAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ ++ SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRNDLQSGLGTAAVIVMDNSTDMIKAIWRLAAFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 MRVMERLVKG AQ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMERLVKGEAQVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418 >gi|114771823|ref|ZP_01449216.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium HTCC2255] gi|114547639|gb|EAU50530.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium HTCC2255] Length = 431 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/417 (73%), Positives = 353/417 (84%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ +SL + SRGHW KI++ G DWII+E+K SGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRSLRGAQSRGHWSETAKIIKNGHDWIIDEMKNSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMR++PH LIEG +IASFA+ ++ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRNDPHALIEGALIASFAMSSNA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE+LQ A+DECY +GLLG N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEFIREREALQLAIDECYDAGLLGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+ FGRENN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFKSFGRENNYGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI EL+++HCGG+RGGW NL AVIPGGSSVP LPA Sbjct: 241 KLFAISGHVNNPCVVEEAMSIPLQELLDRHCGGVRGGWKNLKAVIPGGSSVPLLPADICS 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDWLREQRSGLGTAAVIVMDQNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLVKG A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVKGDAEPDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|85708748|ref|ZP_01039814.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1] gi|85690282|gb|EAQ30285.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1] Length = 430 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/422 (71%), Positives = 358/422 (84%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG Q L + +RG WDN ++E+G+D II E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNVYGFQDAGLKAAQARGDWDNTKALIERGQDAIIEEIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+ A Sbjct: 61 PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE + LQ A+DE Y +GL+G N S G+D D+ +H GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAQVLQKAIDEAYDAGLIGKNASGSGFDFDVFMHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRR A+W+S FGRENN+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRSANWFSSFGRENNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHV PC VEE+MSI F+ELIEKHCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGIRGGWDNLLAVIPGGSSVPLVPAEQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 RNAPMDFDGLKDLGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A EID+L+EV+K +EG TICALGDAAAWPIQGLI++FRP +E RI++ Sbjct: 361 WRVMERLRTGDAAIEEIDMLHEVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420 Query: 419 YH 420 ++ Sbjct: 421 HN 422 >gi|154253660|ref|YP_001414484.1| NADH dehydrogenase I subunit F [Parvibaculum lavamentivorans DS-1] gi|154157610|gb|ABS64827.1| NADH-quinone oxidoreductase, F subunit [Parvibaculum lavamentivorans DS-1] Length = 429 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/417 (74%), Positives = 347/417 (83%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGLQ L + SRG WD I+ KGRDWI++E+K SGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGLQDWRLKAARSRGDWDGTADIIAKGRDWILDEMKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+P LIEGC+IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPQKLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+DE Y +GL+G N+ G+D +I VHHGAGAYICGEETALL Sbjct: 121 CYIYVRGEFIREREQLQAAIDEAYEAGLVGKNAAGSGWDFEIYVHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPANVGLYG PTTVNNVESIAV PTILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGAPTTVNNVESIAVAPTILRRGATWFSSLGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I EL+EKH GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 KLFCISGHVNRPCNVEEEMGIPLRELLEKHAGGVRGGWDNLLAVIPGGSSVPLLPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKNVQSGLGTAAVIVMDKSTDVIKAIARLSAFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVMERLV G A+ +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR IEERI Sbjct: 361 RVMERLVAGDAEVQEIDMLLDVTKRVEGHTICALGDAAAWPVQGLIRHFRGTIEERI 417 >gi|170748473|ref|YP_001754733.1| NADH dehydrogenase I subunit F [Methylobacterium radiotolerans JCM 2831] gi|170654995|gb|ACB24050.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium radiotolerans JCM 2831] Length = 433 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/419 (71%), Positives = 352/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYGL L + RG WD +LE+GRDWII E+KASGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLEQGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++A FA+ AH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLACFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ E+ +LQ AVDE YA+ L+G ++ Y DI VHHGAGAYICGEETAL+E Sbjct: 121 CYIYIRGEYVAEKHALQKAVDEAYAARLVGQSNVHDYPFDIYVHHGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV TILRRG +W++G G +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL IPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVAAITRISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM+R+ +G AQKREID+L+EV+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y Sbjct: 361 VMQRMTEGRAQKREIDMLFEVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419 >gi|146341108|ref|YP_001206156.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. ORS278] gi|146193914|emb|CAL77931.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Bradyrhizobium sp. ORS278] Length = 441 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/420 (74%), Positives = 351/420 (83%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGLQ L + RG WD +++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFTNLYGLQDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ G+ DI V HGAGAYICGEETALL Sbjct: 121 TCYIYVRGEFIRERERLQAAIDQAYEAKLVGKDNVHGWPFDIYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420 >gi|217979054|ref|YP_002363201.1| NADH dehydrogenase I subunit F [Methylocella silvestris BL2] gi|217504430|gb|ACK51839.1| NADH-quinone oxidoreductase, F subunit [Methylocella silvestris BL2] Length = 436 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/419 (71%), Positives = 355/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L +++RG WDN ++EKG+DWI+ E+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGFGDWGLKGALARGAWDNTKGLIEKGKDWILTEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + RP YLVVNADESEPGTCKDR+IMR++PH L+EGC +ASFA+ AH Sbjct: 61 PTGLKWSFMPKADAARPSYLVVNADESEPGTCKDREIMRNDPHLLVEGCFVASFAMEAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I E + L+AA+ + Y +GL+G ++ G+ DI VH GAGAYICGEETALLE Sbjct: 121 CYIYIRGEYILEADRLEAAIQQAYEAGLVGKDNIHGWPFDIYVHRGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNSGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE+MSI F ELI+KHCGG+RGG DNLLAVIPGGSSVPC+PA Q+ Sbjct: 241 LFCISGHVNKPCNVEEAMSIPFRELIDKHCGGVRGGSDNLLAVIPGGSSVPCVPAAQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREGTGW+ R Sbjct: 301 AAMDFDTLRDLKSGLGTAAVIVMDKSTDIIRAIARLSYFYKHESCGQCTPCREGTGWLWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ R+ +G AQKREID+L EV+ IEG TICALGDAAAWP+QGLI++FRP IE+RIDQY Sbjct: 361 VVTRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHFRPEIEKRIDQY 419 >gi|260574764|ref|ZP_05842767.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2] gi|259023181|gb|EEW26474.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2] Length = 431 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/417 (73%), Positives = 352/417 (84%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL+ + RG+WD L GRDWI+++VKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRSLAGARKRGNWDGTAGFLAHGRDWIVDQVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPKV RP YLV+NADESEPGTCKDR+IMRH+PHTL+EG +IA FA+GA Sbjct: 61 PTGLKWSFMPKVSDGRPAYLVINADESEPGTCKDREIMRHDPHTLVEGALIAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ GY+ D+ + HGAGAYICGEETA+L Sbjct: 121 GYIYIRGEYIREREALQAAIDEAYDAGLIGKNACGSGYNYDLYLVHGAGAYICGEETAML 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAASGLYGCPTTVNNVESIAVVPTILRRGASWFAGFGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+MSI EL++KHCGG+RGGW NL AVIPGGSSVP L A Q Sbjct: 241 KLFGISGHVVNPCVVEEAMSIPLRELLDKHCGGVRGGWKNLKAVIPGGSSVPMLNAAQCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 EAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLVKG A+ EID+L V+K +EG TICALGDAAAWPIQGL+++FR IE+RI Sbjct: 361 RVMDRLVKGEAEIEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLVRHFREEIEDRI 417 >gi|220924010|ref|YP_002499312.1| NADH dehydrogenase subunit I F [Methylobacterium nodulans ORS 2060] gi|219948617|gb|ACL59009.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium nodulans ORS 2060] Length = 433 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/419 (71%), Positives = 351/419 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYG L + RG WD +LE+GRDWI+ E+K SGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGFHSPGLDAARKRGAWDGTKFLLEQGRDWIVEEMKRSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE++ E+ +LQ AVDE Y + L+G ++ GY D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGQDNVHGYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV ILRRGA W++G GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAEWFAGIGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLL VIPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLCVIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ + SGLGTAAV+V+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGLQSGLGTAAVMVLDKSTDIVSAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419 >gi|148255908|ref|YP_001240493.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. BTAi1] gi|146408081|gb|ABQ36587.1| NADH dehydrogenase subunit F [Bradyrhizobium sp. BTAi1] Length = 441 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/420 (73%), Positives = 350/420 (83%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL L + RG WD +++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGLHDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G N+ G+ D+ V HGAGAYICGEETALL Sbjct: 121 ACYIYVRGEFIRERERLQAAIDQAYEANLIGKNNIHGWPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420 >gi|209885057|ref|YP_002288914.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha carboxidovorans OM5] gi|209873253|gb|ACI93049.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha carboxidovorans OM5] Length = 441 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/422 (71%), Positives = 350/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I+EKGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFKNLYGLDDWGLAGARRRGAWDGTKSIIEKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 A+IYVRGEFIRERE LQAAVD+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AAYIYVRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VE+++ ITF ELI+KH GG+RGGWDNLLAVIPGG+S P +PA + Sbjct: 241 KLFGISGHVNTPCVVEDALGITFRELIDKHAGGVRGGWDNLLAVIPGGASCPLIPAADCQ 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S LGTA IVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 DLIMDFDGTRAVKSSLGTAGAIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 TR 422 >gi|182679348|ref|YP_001833494.1| NADH dehydrogenase I subunit F [Beijerinckia indica subsp. indica ATCC 9039] gi|182635231|gb|ACB96005.1| NADH-quinone oxidoreductase, F subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 436 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/419 (72%), Positives = 355/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L +M+RG WDN +++KG+DWI+NE+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGYGDWGLKGAMARGAWDNTKGLIDKGKDWILNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMR++PH LIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKADPARPSYLVVNADESEPGTCKDREIMRNDPHLLIEGCLIASFAMEAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE L+AAV + Y + L+G N+ G+ DI VHHGAGAYICGEETALLE Sbjct: 121 CYIYIRGEYIFERERLEAAVAQAYEAKLVGKNNIHGWPFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PR+KPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK Sbjct: 181 SLEGKKGMPRMKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNAGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN C VEE+MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVPC+PA ++ Sbjct: 241 LFCISGHVNKRCNVEEAMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCVPAHEIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ + SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGW+ R Sbjct: 301 APMDFDTLRGLKSGLGTAAVIVMDKSTDIVRAIARLSHFYKHESCGQCTPCREGTGWLWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R+ +G AQKREID+L +V+ IEG TICALGDAAAWP+QGLI++FR IE++IDQY Sbjct: 361 VMTRMAEGRAQKREIDMLLDVTTRIEGHTICALGDAAAWPVQGLIRHFRSEIEKKIDQY 419 >gi|163850512|ref|YP_001638555.1| NADH dehydrogenase I subunit F [Methylobacterium extorquens PA1] gi|218529209|ref|YP_002420025.1| NADH dehydrogenase I subunit F [Methylobacterium chloromethanicum CM4] gi|240137577|ref|YP_002962048.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) [Methylobacterium extorquens AM1] gi|254560048|ref|YP_003067143.1| NADH-quinone oxidoreductase subunit F [Methylobacterium extorquens DM4] gi|163662117|gb|ABY29484.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium extorquens PA1] gi|218521512|gb|ACK82097.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium chloromethanicum CM4] gi|240007545|gb|ACS38771.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) [Methylobacterium extorquens AM1] gi|254267326|emb|CAX23158.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) [Methylobacterium extorquens DM4] Length = 433 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/419 (71%), Positives = 348/419 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL L + RG WD +L+ GRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLADQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLDMGRDWIIDEMKGSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ E+ +LQ AVDE Y + L+G ++ Y DI VHHGAGAYICGEETAL+E Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV TILRRG +W++G G +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + ITF ELI+KHCGG+RGGWDNLL IPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDKHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ R+ G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQY 419 >gi|298291842|ref|YP_003693781.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506] gi|296928353|gb|ADH89162.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506] Length = 435 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/419 (71%), Positives = 348/419 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG L + RG WD +L+ GRD+II +KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGHHDWGLDGARKRGSWDGTKLLLDAGRDFIIEHMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PH L+EGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKNNDGRPHYLVVNADESEPGTCKDREILRHDPHHLVEGCLIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFI ERE LQAAVD+ Y +GL+G N+ G+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIVEREHLQAAVDQAYEAGLIGKNNVHGWDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W++G GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE+M I F ELIEKH GG+RGGWDNLLA+IPGG+S P +PA Q Sbjct: 241 LFGISGHVNTPCIVEEAMGIPFKELIEKHGGGVRGGWDNLLAIIPGGASCPIIPADQCDD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DG + + S GTA V+VMD++TD++KAI R+S F++HESCGQCTPCREGTGWM R Sbjct: 301 LIMDFDGCRAVKSSFGTAGVLVMDKTTDVVKAIARISYFFRHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V++R+V G AQKREIDLL +V+ +EG TICALGDAAAWP+QGLI++FR IE RIDQY Sbjct: 361 VLDRMVAGRAQKREIDLLLQVTTQVEGHTICALGDAAAWPVQGLIRHFRGEIERRIDQY 419 >gi|115524534|ref|YP_781445.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisA53] gi|115518481|gb|ABJ06465.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris BisA53] Length = 441 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/422 (71%), Positives = 350/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF N+YGL L + RG WD I++KG+DWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNVYGLGDWGLDGARRRGGWDGTKAIIDKGKDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++ASFA+GAH Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 A++YVRGEFIRERE LQAA+D+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 TAYVYVRGEFIRERERLQAAIDQAYEARLIGKDNIHGWPFDLYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++ GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFASIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA + Sbjct: 241 KLFGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A +REID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLSRMVEGRAHRREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|326387456|ref|ZP_08209065.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM 19370] gi|326208112|gb|EGD58920.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM 19370] Length = 430 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 302/419 (72%), Positives = 352/419 (84%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG Q +L+ + +RG WDN +LE+GRD II E+K SGLRGRGGAGF Sbjct: 3 LADKDRIFTNLYGFQPWNLAAARARGDWDNTKALLERGRDAIIQEMKDSGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+GA Sbjct: 63 TGMKWSFMPKESRDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMGARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE E+L AAV E Y +GL+G N S GYD D+ VH GAGAYICGEETA++ Sbjct: 123 AYIYIRGEYIREAETLFAAVREAYDAGLIGRNASGSGYDFDVFVHRGAGAYICGEETAMI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGA+W+S FGR+NN+GT Sbjct: 183 ESIEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRDNNKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV+ PC VEE MSI F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P+ Q+ Sbjct: 243 KLFQISGHVDKPCVVEEEMSIPFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPSEQIM 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + Sbjct: 363 RVMERLRTGDASVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 421 >gi|294011313|ref|YP_003544773.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S] gi|292674643|dbj|BAI96161.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S] Length = 438 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 301/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q ++ +M RG WDN K+LE G+D II +KASGLRGRGGAGF Sbjct: 8 LADKDRIFTNVYGFQDWAIDAAMKRGDWDNTKKLLEIGQDEIIERIKASGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 68 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRARA 127 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFI E + L AAV++ Y G LG N+ GYD D+ VH GAGAYICGEETA + Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRG++W+S FGRENN+GT Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGSAWFSSFGRENNKGT 247 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIM 307 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 308 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++ Sbjct: 368 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINE 426 >gi|296444799|ref|ZP_06886762.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium OB3b] gi|296257747|gb|EFH04811.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium OB3b] Length = 434 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 307/420 (73%), Positives = 352/420 (83%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG + L+ + RG WDN +L GRD II EVK SGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGYGDRGLAGARKRGQWDNTKALLALGRDKIIQEVKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK RP YLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH Sbjct: 61 STGLKWSFMPKTPDPARPSYLVINADESEPGTCKDREIMRNDPHTLVEGAMVASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFI ER +LQ AVDE YA+ L+G ++ GY D+ VHHGAGAYICGEETAL+ Sbjct: 121 ACYIYVRGEFIAERVALQRAVDEAYAARLIGKDNVHGYPFDLYVHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWFAGIGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLFSISGHVN PC VEE+MSI F ELI++HCGG+RGG DNLLAVIPGGSSV +PA Q+ Sbjct: 241 KLFSISGHVNKPCNVEEAMSIPFRELIDRHCGGVRGGSDNLLAVIPGGSSVRLVPADQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L++VSK IEG TICALGDAAAWPIQGLI +FR IE RID+Y Sbjct: 361 RVVTRMAEGRAHKREIDMLFDVSKQIEGHTICALGDAAAWPIQGLINHFRGEIERRIDRY 420 >gi|188580280|ref|YP_001923725.1| NADH dehydrogenase I subunit F [Methylobacterium populi BJ001] gi|179343778|gb|ACB79190.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium populi BJ001] Length = 433 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 299/419 (71%), Positives = 348/419 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYG L + RG WD +LE GRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGQHSPGLDAAKKRGAWDGTKFLLEMGRDWIIDEMKGSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ E+ +LQ AVDE Y + L+G ++ Y DI VHHGAGAYICGEETAL+E Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV TILRRG +W++G G +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL IPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ R+ G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQY 419 >gi|300023448|ref|YP_003756059.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525269|gb|ADJ23738.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 428 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 299/420 (71%), Positives = 349/420 (83%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYG L ++SRG WD ++KG D+II+EVK SGLRGRGGAGF Sbjct: 1 MLHDRDRIFRNLYGFHDARLKGAISRGAWDGTKFFIDKGHDYIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPG+CKDR+IMRH+PH LIEG ++A+FA+ AH Sbjct: 61 PTGLKWSFMPK-ADHRPSYLVINADESEPGSCKDREIMRHDPHLLIEGALLAAFAMRAHT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++IYVRGE+IRERE+LQ A+DE YA+ L+G N+ G+D D+ VHHGAGAYICGEETA+LE Sbjct: 120 SYIYVRGEYIREREALQRAIDEAYAAKLIGKNNVHGWDFDLYVHHGAGAYICGEETAMLE 179 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGKKGQPRLKPPFPANVGLYG PTT+NNVESIAV ILRRGA+W++ G NN GTK Sbjct: 180 SIEGKKGQPRLKPPFPANVGLYGAPTTINNVESIAVTGEILRRGANWFAALGLPNNTGTK 239 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE M I ELI+KHCGGIRGGWDNLLAVIPGGSSV C+ A Q Sbjct: 240 LFQISGHVERPCTVEEEMGIPLKELIDKHCGGIRGGWDNLLAVIPGGSSVRCITAEQAMN 299 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L ++GSGLGTAA+IVMD+STDII AI R++ FYKHESCGQCTPCREGTGWM R Sbjct: 300 VTMDFDALGKLGSGLGTAAIIVMDKSTDIIGAIRRIAYFYKHESCGQCTPCREGTGWMWR 359 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+ +G A+KREIDLL++V+K IEG TICALGDAAAWP+QGLIKNFRP+IEERIDQY Sbjct: 360 VLERMERGQAEKREIDLLFDVTKQIEGHTICALGDAAAWPVQGLIKNFRPVIEERIDQYQ 419 >gi|299135027|ref|ZP_07028218.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2] gi|298590004|gb|EFI50208.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2] Length = 441 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 301/422 (71%), Positives = 349/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG WD I++KGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKAIIDKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRERE LQAAVD+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AAYIYIRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++ GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VE+++ ITF ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLFGISGHVNTPCVVEDALGITFKELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAHDCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 TR 422 >gi|312116350|ref|YP_004013946.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii ATCC 17100] gi|311221479|gb|ADP72847.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii ATCC 17100] Length = 430 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 299/420 (71%), Positives = 350/420 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+D+DRIF NLYG L + RG WDN ILEKG+DWII E+KASGLRGRGGAGF Sbjct: 1 MLSDKDRIFKNLYGQHDWGLKGARERGAWDNTKAILEKGQDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PH LIEG +I +FA+ A+ Sbjct: 61 STGMKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIIRHDPHLLIEGSLIGAFAMRANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEFIRER+ LQAA+D+ Y + L+G ++ G+D DI VHHGAGAYICGEETA LE Sbjct: 121 VYIYIRGEFIRERQRLQAAIDQAYEARLIGKDNINGWDCDIYVHHGAGAYICGEETAQLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGKKGQPRLKPPFPAN GL+G PTTVNNVESIAVVP ILRRGA+W++ G+ NN GTK Sbjct: 181 SIEGKKGQPRLKPPFPANAGLWGAPTTVNNVESIAVVPDILRRGAAWFAALGKPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PC VEE M I+F EL++KH GG+RGGWDNLLA+IPGGSSVPC+PA Sbjct: 241 LFCISGHVERPCNVEEEMGISFRELVDKHAGGVRGGWDNLLAIIPGGSSVPCVPAHMCND 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++GSGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 LGMDFDSLRKVGSGLGTAAVIVMDKSTDIVKAISRLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G A+ EID+L++VSK IEG TICALGDAAAWP+QGLI++FR +E RID +H Sbjct: 361 VMERMVEGRAEHAEIDMLWDVSKQIEGHTICALGDAAAWPVQGLIRHFRHEMEARIDAFH 420 >gi|87200309|ref|YP_497566.1| NADH dehydrogenase I subunit F [Novosphingobium aromaticivorans DSM 12444] gi|87135990|gb|ABD26732.1| NADH dehydrogenase subunit F [Novosphingobium aromaticivorans DSM 12444] Length = 428 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 304/422 (72%), Positives = 352/422 (83%), Gaps = 2/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q +L+ + +RG WDN ++E+G+D II E+KASGLRGRGGAGF Sbjct: 3 LQDKDRIFTNVYGFQPWNLAAARARGDWDNTKALMERGQDAIIEEIKASGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A Sbjct: 63 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE ++L AAV E Y +GL+G N S GYD D+ VH GAGAYICGEETA++ Sbjct: 123 AYIYIRGEYIREADTLFAAVQEAYDAGLIGKNASGSGYDFDVFVHRGAGAYICGEETAMI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGASW+S FGRENN+GT Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSSFGRENNKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE MSI F ELIEKHCGGIRGG DNLLAVIPGGSSVP +PA ++ Sbjct: 243 KLFQISGHVNRPCVVEEEMSIPFSELIEKHCGGIRGGKDNLLAVIPGGSSVPLVPAAEIW 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMERL G A EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + Sbjct: 363 RVMERLRTGDADVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAEN 422 Query: 420 HR 421 R Sbjct: 423 AR 424 >gi|114799778|ref|YP_760453.1| NADH dehydrogenase I subunit F [Hyphomonas neptunium ATCC 15444] gi|114739952|gb|ABI78077.1| NADH-quinone oxidoreductase, F subunit [Hyphomonas neptunium ATCC 15444] Length = 435 Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust. Identities = 297/419 (70%), Positives = 348/419 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL L + RG W ++LE+G DWI N++KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGLHSPDLEAAKKRGAWHLTREMLEQGPDWICNQIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+FMPK DRPHYLVVNADESEPGTCKDR+I+RH+PH LIEGC++AS A+ AH Sbjct: 61 PTGLKWTFMPKEVRDRPHYLVVNADESEPGTCKDREILRHDPHLLIEGCMVASRAMRAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGE+I ER +L+ AV E Y + L+G ++ G+D D+ VHHGAGAYICGEETALLE Sbjct: 121 CYVYIRGEYINERHALEKAVKEAYEAKLIGKDNVNGWDFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV PTILRRGA W++GFGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAPTILRRGAQWFAGFGRPNNAGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE MSITF +LIE HCGGIRGGW+NL AVIPGGSSVP +PA Q+ Sbjct: 241 LFCISGHVNTPCNVEEEMSITFRDLIETHCGGIRGGWENLKAVIPGGSSVPMVPAEQIMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+ TD+I+AI RL+ FYKHESCGQCTPCREGTGWM R Sbjct: 301 AHMDFDTLRDLKSGLGTAAVIVMDKQTDLIRAIARLAYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ER+ +G A+ EID L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI QY Sbjct: 361 VLERMARGEAEHDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRHEIEDRITQY 419 >gi|149184631|ref|ZP_01862949.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21] gi|148831951|gb|EDL50384.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21] Length = 430 Score = 635 bits (1637), Expect = e-180, Method: Compositional matrix adjust. Identities = 301/422 (71%), Positives = 354/422 (83%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L + +RG WD+ ++ +G D II EVKASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGFQNWGLKAAEARGDWDDTKSLIARGHDNIIEEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +++ +A+ A Sbjct: 61 PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVSGYAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE E LQAA+DE Y +GL+G N SK GYD D+ +H GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAEVLQAAIDEAYDAGLIGKNASKSGYDFDVFLHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PC VEE++SI F ELIEKHCGGI GG DNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVNKPCVVEEALSIPFSELIEKHCGGITGGKDNLLAVIPGGSSVPLVPAEQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+DGLK++GSGLGTA VIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 WDAPMDFDGLKDLGSGLGTAGVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+MERL G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++ Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420 Query: 419 YH 420 ++ Sbjct: 421 HN 422 >gi|294083716|ref|YP_003550473.1| NADH-quinone oxidoreductase subunit F [Candidatus Puniceispirillum marinum IMCC1322] gi|292663288|gb|ADE38389.1| NADH-quinone oxidoreductase, F subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 430 Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust. Identities = 301/421 (71%), Positives = 340/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YG L+ + RG WDN IL+ G I+ +KASGLRGRGGAGF Sbjct: 1 MLKDADRIFTNIYGWNDAMLAGAKKRGDWDNTAAILKLGHGEIVERMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ DRPHYLVVNADESEPGTCKDRDI+RHEPH L+EGCV+A FA+ AH Sbjct: 61 PTGLKWSFMPQEVRDRPHYLVVNADESEPGTCKDRDIIRHEPHKLLEGCVVAGFAMRAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF+ E LQAA+DE Y +GLLG N+ K G+D DI +H GAGAYICGEETALL Sbjct: 121 AYIYIRGEFVNEARRLQAAIDEAYDAGLLGKNAAKSGWDFDIYLHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG+ W++G G+ENN GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGSDWFAGLGKENNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I EL+EKH GG+RGGWDNLLAVIPGGSS P +P Sbjct: 241 KLFCISGHVNKPCNVEEEMGIPLKELLEKHAGGVRGGWDNLLAVIPGGSSTPMMPKDTCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+E G+GLGTA VIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 TMTMDFDALREAGTGLGTAGVIVMDKSTDVVKAISRLSYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+MERLV+G A+ EID LYEV+K +EG TICALGDAAAWPIQGLIK+FRP IE RI Sbjct: 361 RMMERLVRGEAEPHEIDTLYEVTKQVEGHTICALGDAAAWPIQGLIKHFRPEIERRIAAR 420 Query: 420 H 420 H Sbjct: 421 H 421 >gi|86749697|ref|YP_486193.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris HaA2] gi|86572725|gb|ABD07282.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris HaA2] Length = 441 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 302/422 (71%), Positives = 347/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG W+ I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IA A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ GY D+ V HGAGAYICGEETALL Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|332185757|ref|ZP_08387504.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17] gi|332014115|gb|EGI56173.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17] Length = 436 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 303/420 (72%), Positives = 350/420 (83%), Gaps = 2/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q ++ +M RG WDN +LE G+D II+ +KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGYQPWNVDAAMKRGDWDNTKALLELGQDKIIDVIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 61 PTGMKWSFMPKEPRPDRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE E+L AAV E Y G LG N+ GYD D+ VH GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAETLFAAVAEAYDRGFLGKNACGSGYDFDVFVHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGA W+S FGRENN+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAEWFSSFGRENNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHV+ PC VEESMSI+F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 241 TKLFQISGHVDRPCVVEESMSISFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPAAEI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 MDAPMDFDGLKAVGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMER+ G A EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI + Sbjct: 361 WRVMERMRTGDADVSEIDTLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMERRIRE 420 >gi|77463076|ref|YP_352580.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides 2.4.1] gi|77387494|gb|ABA78679.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Rhodobacter sphaeroides 2.4.1] Length = 431 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 291/417 (69%), Positives = 348/417 (83%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+Q +SL +M+RG WD +L GRD II+ VKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGQNAAKSGYDFDVYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV+P ILRRG W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC +EESMSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Q Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYDG++E+ S GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417 >gi|91977350|ref|YP_570009.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB5] gi|91683806|gb|ABE40108.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris BisB5] Length = 441 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 301/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG W+ I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLVAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA + Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STDI+ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDIVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|85374157|ref|YP_458219.1| NADH dehydrogenase I subunit F [Erythrobacter litoralis HTCC2594] gi|84787240|gb|ABC63422.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter litoralis HTCC2594] Length = 430 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 296/422 (70%), Positives = 354/422 (83%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG Q L + +RG WD+ ++ +G + II E+K SGLRGRGGAGF Sbjct: 1 MLADKDRIFTNVYGFQDWGLKAAQARGDWDDTKALIARGEENIIEEIKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 61 PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE E+LQAA+DE Y +GL+G N S G+D D+ +H GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAETLQAAIDEAYDAGLIGKNASGSGFDYDVFLHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRG +W++ FGRENN G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGNWFASFGRENNHG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHV PC VEE+MSI F+ELIEKHCGGI GGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGITGGWDNLLAVIPGGSSVPLVPAEQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 RQAPMDFDGLKDVGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+MERL G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++ Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420 Query: 419 YH 420 ++ Sbjct: 421 HN 422 >gi|126461948|ref|YP_001043062.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17029] gi|221638932|ref|YP_002525194.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides KD131] gi|332557949|ref|ZP_08412271.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N] gi|126103612|gb|ABN76290.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides ATCC 17029] gi|221159713|gb|ACM00693.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides KD131] gi|332275661|gb|EGJ20976.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N] Length = 431 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 291/417 (69%), Positives = 348/417 (83%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+Q +SL +M+RG WD +L GRD II+ VKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGRNAAKSGYDFDVYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV+P ILRRG W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC +EESMSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Q Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYDG++E+ S GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417 >gi|27380023|ref|NP_771552.1| NADH dehydrogenase I subunit F [Bradyrhizobium japonicum USDA 110] gi|27353177|dbj|BAC50177.1| NADH ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum USDA 110] Length = 441 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 307/420 (73%), Positives = 347/420 (82%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG WD I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFKNLYGLHDWGLEGARRRGAWDGTKNIIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASCAMNAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ G+ DI V HGAGAYICGEETALL Sbjct: 121 ACYIYVRGEFIREREHLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 >gi|39936010|ref|NP_948286.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris CGA009] gi|192291665|ref|YP_001992270.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris TIE-1] gi|39649864|emb|CAE28386.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris CGA009] gi|192285414|gb|ACF01795.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris TIE-1] Length = 441 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 300/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL +L + RG W+ I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWTLKGARRRGGWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ GY D+ V HGAGAYICGEETALL Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRANNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|294677060|ref|YP_003577675.1| NADH-quinone oxidoreductase subunit F [Rhodobacter capsulatus SB 1003] gi|7387959|sp|O07948|NUOF_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|1938240|emb|CAA71232.1| complex I 51kDa subunit [Rhodobacter capsulatus] gi|2182080|emb|CAA71013.1| NADH:ubiquinone oxidoreductase 47 kD complex I subunit [Rhodobacter capsulatus] gi|3282565|gb|AAC24991.1| NUOF [Rhodobacter capsulatus] gi|294475880|gb|ADE85268.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter capsulatus SB 1003] Length = 431 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 295/417 (70%), Positives = 346/417 (82%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YG+ +SL +M+RGHWD IL GRDWII +VKASGLRGRGGAGF Sbjct: 1 MLNDHDRIFTNIYGMHDRSLKGAMARGHWDGTAAILGNGRDWIIEQVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP +LV+NADESEPGTCKDR+IMRH+PHTLIEG +IA FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE++RE+E+LQAA+DECY +GL+G N+ + YD D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG +W++G GR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPNNTGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Sbjct: 241 KLFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPVIPAHLCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMDYDG++E S GTA +IVMD+ TDIIKAI RLS F+KHESCGQCTPCREGT WM Sbjct: 301 DAIMDYDGMREKQSSFGTACLIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGTSWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVMERLV G A+ EID+L+ V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMERLVTGEAEVEEIDMLFSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417 >gi|296283840|ref|ZP_06861838.1| NADH dehydrogenase I subunit F [Citromicrobium bathyomarinum JL354] Length = 431 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 300/417 (71%), Positives = 348/417 (83%), Gaps = 2/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG Q L + +RG WD+ +L KG+D II+++KASGLRGRGGAGF Sbjct: 3 LQDKDRIFTNLYGFQDWGLKAAQARGDWDDTKALLAKGQDSIIDDMKASGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D RP +LV+NADESEPG+CKDR+IMRH+PH LIEG ++A FA+ A Sbjct: 63 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIMRHDPHKLIEGALVAGFAMRARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE E+LQ A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+ Sbjct: 123 AYIYIRGEYIREAETLQKAIDEAYDAGLIGKNACGSGYDYDVFLHRGAGAYICGEETALI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRG SW++ FGRE N GT Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPSWFASFGREKNDGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE MSI F ELIE+HCGG+RGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 243 KLFQISGHVEKPCVVEEEMSIPFRELIERHCGGVRGGWDNLLAVIPGGSSVPLVPAEQIM 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGLKE+GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 303 DAPMDFDGLKELGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RL G A EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP +E RI Sbjct: 363 RVMKRLETGDADIDEIDMLHTVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRI 419 >gi|114764726|ref|ZP_01443911.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Pelagibaca bermudensis HTCC2601] gi|114542926|gb|EAU45947.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Roseovarius sp. HTCC2601] Length = 431 Score = 631 bits (1627), Expect = e-179, Method: Compositional matrix adjust. Identities = 291/417 (69%), Positives = 350/417 (83%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + RGHWD IL KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRTLQGAKKRGHWDGTAGILGKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGE+IRERE+LQAA+DE Y +G++G N+ G+D D+ +HHGAGAYICGEET+LL Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYDAGMIGKNACGSGWDFDLYLHHGAGAYICGEETSLL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL ++GHVN P EE MS++ E+IEKH GGIRGGWDNL A+IPGG+S P LP ++ Sbjct: 241 KLMGLTGHVNTPSVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPILPKDKLE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AI D+D ++E S GT +IVMD++TD++KA+WRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAIFDFDWMRENKSSFGTGCMIVMDQNTDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFREEIEDRI 417 >gi|316933898|ref|YP_004108880.1| NADH-quinone oxidoreductase subunit F [Rhodopseudomonas palustris DX-1] gi|315601612|gb|ADU44147.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris DX-1] Length = 441 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 300/422 (71%), Positives = 347/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL +L + RG W+ I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWTLKGARRRGAWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ GY D+ V HGAGAYICGEETALL Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLYGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|146278038|ref|YP_001168197.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17025] gi|145556279|gb|ABP70892.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides ATCC 17025] Length = 431 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 292/417 (70%), Positives = 347/417 (83%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL +M+RG WD +L GRD II+ VK SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMGDRSLKGAMARGQWDGTADLLALGRDRIIDIVKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +++ FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALLSGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDAGLIGRNAAKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV+P ILRRG W++GFGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFAGFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC +EESMSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Q Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYDG++E+ S GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV+G A+ EID+L V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417 >gi|90423909|ref|YP_532279.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB18] gi|90105923|gb|ABD87960.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris BisB18] Length = 441 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 302/422 (71%), Positives = 344/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYG L + RG WD I+EKGRDWIINE+K SGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGQGDWGLEGARRRGSWDGTKAIIEKGRDWIINEMKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GA Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHVLVEGCLLASFAMGAK 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAAVD+ Y + L+G ++ G+ ++ V HGAGAYICGEETALL Sbjct: 121 VCYIYVRGEFIREREHLQAAVDQAYEAKLIGQDNIHGWPFELYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLFGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCG 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLSRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|103486791|ref|YP_616352.1| NADH dehydrogenase I subunit F [Sphingopyxis alaskensis RB2256] gi|98976868|gb|ABF53019.1| NADH-quinone oxidoreductase, F subunit [Sphingopyxis alaskensis RB2256] Length = 430 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 298/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG Q +L + +RG WDN ++++G+D II E+KASGLRGRGGAGF Sbjct: 3 LADKDRIFTNLYGFQPWNLKAAQARGDWDNTRDLMKRGQDAIIEEIKASGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A Sbjct: 63 TGLKWSFMPKEPRADRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRE E+L AAV E Y +GLLG N+ K GYD D+ VH GAGAYICGEETA++ Sbjct: 123 AYIYIRGEFIREAETLFAAVQEAYDAGLLGKNAAKSGYDFDVFVHRGAGAYICGEETAMI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGRENN+GT Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAPWFASFGRENNKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 243 KLFQISGHVNKPCVVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAEIM 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+DGLK +GSGLGTAA IVMD+STD+++AI R+S FYKHESCG CTPCREGTGWM Sbjct: 303 DCPMDFDGLKAVGSGLGTAAAIVMDKSTDVVQAISRISYFYKHESCGHCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI + Sbjct: 363 RVMERLRTGDADISEIDTLFDVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIRE 421 >gi|260428309|ref|ZP_05782288.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45] gi|260422801|gb|EEX16052.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45] Length = 431 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 291/417 (69%), Positives = 347/417 (83%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + RGHWD I+ KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRTLEGAKKRGHWDGTADIIGKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE+E+LQAA+DE Y G++G N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDKGMIGRNACGTGWDFDLYLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +++GHVN PC EE MS++ E+IEKH GGIRGGWDNL A+IPGG+S P LP + Sbjct: 241 KLMALTGHVNTPCVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPVLPKHALE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AI D+D ++E S GT +IVMD S D++KA+WRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAIFDFDWMRENRSSFGTGCMIVMDNSVDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417 >gi|315499794|ref|YP_004088597.1| NADH-quinone oxidoreductase, f subunit [Asticcacaulis excentricus CB 48] gi|315417806|gb|ADU14446.1| NADH-quinone oxidoreductase, F subunit [Asticcacaulis excentricus CB 48] Length = 437 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 301/419 (71%), Positives = 343/419 (81%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RG W+ IL GRDWII VK SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGRDWIITNVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ERE L+AA+ + Y + L+G N+ G+D DI VHHG GAYICGEETALLE Sbjct: 124 CYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGGGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA+W++GFG +NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAAWFAGFGAQNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+ +GSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 304 MPMDFDTLRGLGSGLGTAAVIVMDKSTDLIKAIARLSYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+ KG A +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR IE+RI Y Sbjct: 364 VMERMAKGDADPKEIDILLDVTKQVEGHTICALGDAAAWPVQGLIRHFRHEIEDRIALY 422 >gi|302383053|ref|YP_003818876.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides ATCC 15264] gi|302193681|gb|ADL01253.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides ATCC 15264] Length = 437 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 299/426 (70%), Positives = 346/426 (81%), Gaps = 2/426 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGLQ L + +RG W+ +L+ GRDW+I VK SGLRGRGGAGF Sbjct: 4 LLEDKDRIFTNLYGLQDWGLEGAKNRGCWNATKDMLDMGRDWLITNVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ERE ++AAV + Y + L+G N+ G+D D+ +HHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKNNIHGWDFDVYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAEWFAGFGRPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L SISGHVN PC VEE+MSI +LIE HCGG+RGGWDNL A+IPGG SVP + Sbjct: 244 LMSISGHVNRPCNVEEAMSIPLRQLIEDHCGGVRGGWDNLKAIIPGGVSVPLITREMSEV 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L+EM SGLGTAAV+VMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 304 ALMDFDSLREMKSGLGTAAVVVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 V+ER+ G A EID+L EVS IEG TICALGDAAAWP+QGLI++FR IE+RI QY Sbjct: 364 VLERMAVGEADPGEIDMLLEVSTQIEGHTICALGDAAAWPVQGLIRHFRHEIEDRISQYR 423 Query: 420 -HRCNF 424 R NF Sbjct: 424 TRRANF 429 >gi|85717024|ref|ZP_01047986.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A] gi|85696148|gb|EAQ34044.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A] Length = 441 Score = 627 bits (1618), Expect = e-178, Method: Compositional matrix adjust. Identities = 302/420 (71%), Positives = 346/420 (82%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I++KGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVDKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A +GAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE LQAA+DE Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++ GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 >gi|75676073|ref|YP_318494.1| NADH dehydrogenase I subunit F [Nitrobacter winogradskyi Nb-255] gi|74420943|gb|ABA05142.1| NADH dehydrogenase subunit F [Nitrobacter winogradskyi Nb-255] Length = 441 Score = 627 bits (1618), Expect = e-178, Method: Compositional matrix adjust. Identities = 302/420 (71%), Positives = 346/420 (82%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I+ KGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVGKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A +GAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE LQAA+DE Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHV PC VEE+M ITF ELI+ HCGGIRGGW NL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCVSGHVERPCNVEEAMGITFRELIDTHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR IEERIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 >gi|254420908|ref|ZP_05034632.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3] gi|196187085|gb|EDX82061.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3] Length = 437 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 297/426 (69%), Positives = 348/426 (81%), Gaps = 2/426 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG Q +L + +RG W+ +L+ GRDWIIN VKASGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGFQDWTLDGAKTRGAWNATKDMLDLGRDWIINNVKASGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+P LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPQLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ERE ++AAV + Y + L+G ++ G+D D+ +HHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKDNVHGWDFDVYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAGWFAGFGRPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L +ISGHVN PC VEE+MSI +L+E+HCGG+RGGWDNL A+IPGGSSVP + Sbjct: 244 LMAISGHVNAPCVVEEAMSIPLRQLLEEHCGGVRGGWDNLKAIIPGGSSVPLITREMSET 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L+EM SGLGTAAVIVMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 304 ALMDFDSLREMRSGLGTAAVIVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 V+ER+ G A EIDLL +V+ +EG TICALGDAAAWP+QGLI++FR IEERI Y Sbjct: 364 VLERMSVGEADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIANYR 423 Query: 420 -HRCNF 424 R NF Sbjct: 424 SRRANF 429 >gi|92117738|ref|YP_577467.1| NADH dehydrogenase I subunit F [Nitrobacter hamburgensis X14] gi|91800632|gb|ABE63007.1| NADH dehydrogenase subunit F [Nitrobacter hamburgensis X14] Length = 441 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 303/420 (72%), Positives = 346/420 (82%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTRTIVDKGRDWIISEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A +GAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE LQAA+DE Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIREREHLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLGKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMADGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 >gi|307293265|ref|ZP_07573111.1| NADH-quinone oxidoreductase, F subunit [Sphingobium chlorophenolicum L-1] gi|306881331|gb|EFN12547.1| NADH-quinone oxidoreductase, F subunit [Sphingobium chlorophenolicum L-1] Length = 438 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 299/419 (71%), Positives = 346/419 (82%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q + +M RG WDN K++E G+D II +KASGLRGRGGAGF Sbjct: 8 LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTRKLMEIGQDEIIERIKASGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A Sbjct: 68 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIVRHDPHKLIEGALIAGFAMRARA 127 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFI E + L AAV++ Y G LG N+ GYD D+ VH GAGAYICGEETA + Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRG+ W+S FGRENN+GT Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRGSEWFSSFGRENNKGT 247 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 307 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 308 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++ Sbjct: 368 RVMERLRSGDADISEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINE 426 >gi|288958984|ref|YP_003449325.1| NADH dehydrogenase I chain F [Azospirillum sp. B510] gi|288911292|dbj|BAI72781.1| NADH dehydrogenase I chain F [Azospirillum sp. B510] Length = 429 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 295/421 (70%), Positives = 337/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L + RG WDN IL GR+WII +VK SGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNLYGFQDFGLDGARKRGDWDNTASILANGREWIIEQVKQSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK +D+P YLV+NADE EPGTCKDRDI+RH+PH LIEGC+IA FAIGA Sbjct: 61 STGMKWSFMPKNVTDKPVYLVINADEGEPGTCKDRDILRHDPHKLIEGCLIAGFAIGASA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE YA+GL+G N+ GYD D+ +H GAGAYICGEETAL+ Sbjct: 121 CYIYIRGEFYNEGSNVQRAIDEAYAAGLIGKNACGTGYDYDVYIHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPR KPPFPA GLY CPTTVNNVESIAVVPTILRRGASW++G GR N GT Sbjct: 181 ESIEGKKGQPRNKPPFPAQAGLYSCPTTVNNVESIAVVPTILRRGASWFAGLGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I ELIEKH GG+RGGWDNLL +IPGGSSVP LP Sbjct: 241 KLFCISGHVNNPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLGIIPGGSSVPVLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVMD+STDI+KAI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 TVLMDFDSLREVQSGLGTAAVIVMDKSTDIVKAIARLSSFYAHESCGQCTPCREGTGWMS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+R+V G A+ EID+L +V+K +EG TICALGDAAAWPIQGL ++FRP +E RI Y Sbjct: 361 RVMQRMVTGNARLEEIDMLLQVTKQVEGHTICALGDAAAWPIQGLFRHFRPEVERRIQAY 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|145354210|ref|XP_001421384.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581621|gb|ABO99677.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 449 Score = 624 bits (1609), Expect = e-177, Method: Compositional matrix adjust. Identities = 292/419 (69%), Positives = 345/419 (82%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +M RG W N ++E G DWII+E+KASGLRGRGGAGF Sbjct: 21 LKDQDRIFTNLYGKHDPFLKGAMKRGDWHNTKSLVELGADWIISEMKASGLRGRGGAGFP 80 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMP+V RP+YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A A Sbjct: 81 SGLKWSFMPRVSDGRPNYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 140 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A+ ECYA+G LG N+ G D D+ +H+GAGAYICGEETAL+E Sbjct: 141 YIYIRGEYVNERLALERALAECYAAGYLGKNACGSGMDFDVNIHYGAGAYICGEETALIE 200 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK Sbjct: 201 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 260 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGWDNLLAVIPGGSSVP +P Sbjct: 261 LFCISGHVNNPCTVEEEMSIPLRDLIEKHCGGVRGGWDNLLAVIPGGSSVPLIPKNVCED 320 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 321 VLMDFDSLKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTSWLYN 380 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M+R+VKG A+ EID L E++K IEG TICALGDAAAWPIQG+I++FRPL+EERI Q+ Sbjct: 381 IMQRMVKGDARLEEIDTLQELTKQIEGHTICALGDAAAWPIQGVIRHFRPLLEERISQF 439 >gi|329850724|ref|ZP_08265569.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum C19] gi|328841039|gb|EGF90610.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum C19] Length = 437 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 301/419 (71%), Positives = 339/419 (80%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RG W+ IL G WII+ VK SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGAPWIIDNVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE L+AAV + Y + L+G N+ G+D D+ VHHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYILERERLEAAVKQAYEAKLIGKNNVHGWDFDVYVHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA+W++ FG NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGSGLYGCPTTVNNVESIAVVGTILRRGAAWFASFGAPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRKLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+ + SGLGTAAVIVMD+STD+I+AI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 304 LAMDFDTLRNLKSGLGTAAVIVMDKSTDLIRAIARLSYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+VKG A+ EID L EV+ +EG TICALGDAAAWPIQGLI++FRP IE RI Y Sbjct: 364 VMERMVKGDAEPSEIDTLLEVTTQVEGHTICALGDAAAWPIQGLIRHFRPEIEARIAAY 422 >gi|304319950|ref|YP_003853593.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503] gi|303298853|gb|ADM08452.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503] Length = 453 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 293/419 (69%), Positives = 340/419 (81%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL+ L + RG W+ IL+ G DW+I +VK SGLRGRGGAGF Sbjct: 22 MLQDKDRIFTNLYGLKDPFLEGAKDRGAWNGTKDILDMGIDWVIQQVKDSGLRGRGGAGF 81 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 82 PTGLKWSFMPKEVGERPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMRAHA 141 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE LQ A+DE YA+ L+G ++ GYD D+ + HGAGAYICGEETALLE Sbjct: 142 CYIYIRGEYIFEREQLQKAIDEAYAAKLIGKDNVHGYDFDLYLSHGAGAYICGEETALLE 201 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTI+RRGA W+ FGRENN GTK Sbjct: 202 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTIIRRGADWFKRFGRENNHGTK 261 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F ISGHVN PC VEE MSI LI+ HCGG+RGGWDNL AVIPGGSSV CLP Sbjct: 262 VFCISGHVNKPCNVEEEMSIPLKTLIDTHCGGVRGGWDNLKAVIPGGSSVRCLPKSICDD 321 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+E SGLGTAAVIVMD+STD++KAI R++ FYKHESCGQCTPCREGTGWM R Sbjct: 322 VLMDFDALREHKSGLGTAAVIVMDKSTDMVKAIARIAHFYKHESCGQCTPCREGTGWMWR 381 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ R+ +G A+ EID L +V+ +EG TICALGDAAAWP+QGLI++FR IEE+I Y Sbjct: 382 VLVRMSRGEAEMWEIDKLLDVAGQVEGHTICALGDAAAWPVQGLIQHFRHEIEEKITAY 440 >gi|94496476|ref|ZP_01303053.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58] gi|94424222|gb|EAT09246.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58] Length = 445 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 297/419 (70%), Positives = 342/419 (81%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q + +M RG WDN +LE G+D IIN +KASGLRGRGGAGF Sbjct: 17 LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTKALLEIGQDEIINRIKASGLRGRGGAGFP 76 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A Sbjct: 77 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGFAMRARA 136 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFI E + L AAV++ YA G LG N+ GYD D+ VH GAGAYICGEETA + Sbjct: 137 AYIYIRGEFIYEAKVLFAAVEQAYAKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 196 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRR W++ GR NN GT Sbjct: 197 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRSPEWFASIGRPNNLGT 256 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE+M I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 257 KLFQISGHVNKPCVVEEAMGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 316 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 317 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 376 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + Sbjct: 377 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 435 >gi|148555895|ref|YP_001263477.1| NADH dehydrogenase I subunit F [Sphingomonas wittichii RW1] gi|148501085|gb|ABQ69339.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas wittichii RW1] Length = 432 Score = 618 bits (1593), Expect = e-175, Method: Compositional matrix adjust. Identities = 296/420 (70%), Positives = 345/420 (82%), Gaps = 2/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG Q +L + RG WD+ +L +G D II ++KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFTNVYGFQPWNLEAARKRGDWDDTKALLARGPDQIIEDIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 61 PTGMKWSFMPKEPKPGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEFI E + L AAV+E YA+GLLG N+ GYD D+ VH GAGAYICGEETA Sbjct: 121 AAYIYIRGEFIYEAKVLFAAVEEAYAAGLLGKNAAGSGYDFDVFVHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGA+W++G GRE N+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGREGNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PC VEE+M I F ELI++H GGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVNKPCVVEEAMGIPFRELIDRHAGGIRGGWDNLLAVIPGGSSVPLVPAAQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 MDAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A+ EID L +V+K +EG TICALGDAAAWPIQGL+++FRP +E RI + Sbjct: 361 WRVMERLRTGEARIDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLLRHFRPEVERRIRE 420 >gi|114327961|ref|YP_745118.1| NADH dehydrogenase I subunit F [Granulibacter bethesdensis CGDNIH1] gi|114316135|gb|ABI62195.1| NADH-quinone oxidoreductase chain F [Granulibacter bethesdensis CGDNIH1] Length = 438 Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust. Identities = 293/422 (69%), Positives = 343/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L +++RG WD IL +GRD II ++K SGLRGRGGAGF Sbjct: 1 MLNDRDRIFTNLYGEHDWGLKGALARGDWDGTAAILARGRDAIIEDIKISGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PH L+EGC+IA+FA+GAH Sbjct: 61 PTGMKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPHKLVEGCLIAAFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IYVRGEF E LQAA+D+ Y +GL+G N+ G+D D+ VH GAGAYICGEETAL+ Sbjct: 121 AYIYVRGEFYNESCHLQAAIDQAYEAGLIGKNACGSGWDFDLYVHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++ GR N GT Sbjct: 181 ESIEGKKGMPRLKPPFPAGVGLYGCPTTVNNVESIAVCPTILRRGGAWFASLGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLFSISGHVN PC VEE + I EL+E++ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 KLFSISGHVNKPCNVEEELGIPLRELLERYAGGVRGGWDNLLAVIPGGSSVPLLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DVLMDFDSLREQRSGLGTAAVIVMDKSTDVIKAIARLSHFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M R+V+G A EID+L +V++ +EG TICALGDAAAWP+QGLI++FRP+IE+RI Y Sbjct: 361 RIMNRMVEGRADLEEIDMLEQVTRQVEGHTICALGDAAAWPVQGLIRHFRPVIEDRIRAY 420 Query: 420 HR 421 + Sbjct: 421 KQ 422 >gi|329114683|ref|ZP_08243442.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001] gi|326696163|gb|EGE47845.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001] Length = 442 Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust. Identities = 292/420 (69%), Positives = 337/420 (80%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L + RG WDN I+ KGRD +I E+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGQDDWRLPAARKRGDWDNTAAIIAKGRDAVIAEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR++MRHEPH LIE +IASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF RE E LQAA+DE Y +GLLG N+ G+D D +H GAGAYICGEETALL Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGTGWDFDFRIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA GLYGCPTTVNNVESIAV TI+RRGA+W+SG GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + ++ E+IEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 241 KLMAISGHVNTPCVFEEELGVSLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M R+V+G A+ EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY Sbjct: 361 RMMNRMVQGKAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420 >gi|162148806|ref|YP_001603267.1| NADH dehydrogenase I subunit F [Gluconacetobacter diazotrophicus PAl 5] gi|209545446|ref|YP_002277675.1| NADH dehydrogenase subunit I F [Gluconacetobacter diazotrophicus PAl 5] gi|161787383|emb|CAP56978.1| NADH-quinone oxidoreductase chain F [Gluconacetobacter diazotrophicus PAl 5] gi|209533123|gb|ACI53060.1| NADH-quinone oxidoreductase, F subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 441 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 290/420 (69%), Positives = 341/420 (81%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L+ + +RG WD +I+ +GRD IINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGQQDWRLAGARARGDWDGTAEIIARGRDAIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR+I+RH+PH LIE +IASFA+GAH Sbjct: 61 PTGVKWSFMPKNSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE YA+GL+G N+ G+D D +H GAGAYICGEETALL Sbjct: 121 AYIYIRGEFFNEARHLQIAIDEAYAAGLIGQNAAGSGWDFDFYIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV TILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVAATILRRGATWFSSLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + ++IEKH GG+RGGWDNLLAVIPGGSSVP LPA Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKDIIEKHGGGVRGGWDNLLAVIPGGSSVPLLPASVCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ SGLGTA +IVMD+STD+I+AI R S FYKHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDVIRAIARFSQFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM R+V+G A+ EID+L +V++ +EG TICALGDAAAWPIQGLI++FRP++EERI Y Sbjct: 361 RVMHRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRHFRPVMEERIRAY 420 >gi|639834|emb|CAA58823.1| NADH dehydrogenase [Solanum tuberosum] Length = 487 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 288/425 (67%), Positives = 338/425 (79%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRAKAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER+SLQ A E Y +GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERKSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI+ ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 298 LFCISGHVNKPCTVEEEMSISLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI ++ Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIREHA 477 Query: 421 RCNFQ 425 Q Sbjct: 478 ERELQ 482 >gi|83858409|ref|ZP_00951931.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633] gi|83853232|gb|EAP91084.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633] Length = 435 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 291/419 (69%), Positives = 341/419 (81%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RGHW+ +ILE+GRDWII+E+K SGLRGRGGAGF Sbjct: 4 LLQDKDRIFTNLYGRHDWRLEGAKQRGHWNATKEILEQGRDWIIDEMKKSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IASFA+ AH Sbjct: 64 PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRNDPQTLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E ++AA+ E Y + L+G ++ G+D D+ +HHGAGAYICGEETALLE Sbjct: 124 CYIYIRGEYQFELGRMEAAIKEAYDAKLIGKDNIHGWDFDLYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W++GFGRE N GTK Sbjct: 184 SLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGADWFAGFGREGNAGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FSISGHVN PC VEE MSI LIE HCGG+RGGWDNL AVIPGGSSVP LP Sbjct: 244 VFSISGHVNAPCNVEEVMSIPLKTLIETHCGGVRGGWDNLKAVIPGGSSVPLLPKEICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD++KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 304 VLMDFDALKEHRSGLGTAAVIVMDKSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V++R+ +G A+ EID L +V+ +EG TICALGDAAAWP+QGLI++FR IE+RI+ Y Sbjct: 364 VLDRMSRGEAETSEIDDLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRGEIEDRINNY 422 >gi|258542717|ref|YP_003188150.1| NADH dehydrogenase I subunit F [Acetobacter pasteurianus IFO 3283-01] gi|256633795|dbj|BAH99770.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-01] gi|256636854|dbj|BAI02823.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-03] gi|256639907|dbj|BAI05869.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-07] gi|256642963|dbj|BAI08918.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-22] gi|256646018|dbj|BAI11966.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-26] gi|256649071|dbj|BAI15012.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-32] gi|256652058|dbj|BAI17992.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655115|dbj|BAI21042.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-12] Length = 442 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 290/420 (69%), Positives = 336/420 (80%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L + RG W+N I+ KGRD ++ E+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGQDDWRLPAARKRGDWENTAAIIAKGRDAVVAEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR++MRHEPH LIE +IASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF RE E LQAA+DE Y +GLLG N+ G+D D +H GAGAYICGEETALL Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGSGWDFDFRIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA GLYGCPTTVNNVESIAV TI+RRGA+W+SG GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + E+IEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M R+V+G A+ EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY Sbjct: 361 RMMNRMVQGTAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420 >gi|83311881|ref|YP_422145.1| NADH dehydrogenase I subunit F [Magnetospirillum magneticum AMB-1] gi|82946722|dbj|BAE51586.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 427 Score = 614 bits (1584), Expect = e-174, Method: Compositional matrix adjust. Identities = 297/425 (69%), Positives = 341/425 (80%), Gaps = 2/425 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTNLYG+ L +M+RG W+ IL KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLRDSDRIFTNLYGIHDWRLKGAMARGDWNGTKDILAKGRDWIIEEMKNSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IASFAIGAH Sbjct: 61 PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIASFAIGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF+RE E L A+DE A+GLLG N+ G+D ++ VH GAGAYICGEE+AL+ Sbjct: 121 AYIYIRGEFVREAEHLNIAIDEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I ELIEKH GG+RGGWDNLLA+IPGGSSVP L Q Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLAIIPGGSSVPMLTKQQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ M SGLGTAAV+VMD+STD+++AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 EVTMDFDALRAMRSGLGTAAVMVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQ 418 R+M R+V G A+ EIDLL E+S+ IEG TICALGDAAAWPIQGLI+ FRP +E RI D+ Sbjct: 361 RMMGRMVTGDAELSEIDLLEEISRQIEGHTICALGDAAAWPIQGLIRAFRPEMERRILDR 420 Query: 419 YHRCN 423 + N Sbjct: 421 QAKTN 425 >gi|254294097|ref|YP_003060120.1| NADH dehydrogenase I subunit F [Hirschia baltica ATCC 49814] gi|254042628|gb|ACT59423.1| NADH-quinone oxidoreductase, F subunit [Hirschia baltica ATCC 49814] Length = 436 Score = 614 bits (1584), Expect = e-174, Method: Compositional matrix adjust. Identities = 290/420 (69%), Positives = 344/420 (81%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG SL + RG W++ ++++ G +WI +++K SGLRGRGGAGF Sbjct: 1 MLLDKDRIFTNLYGHHDWSLEGAKQRGAWNSTKELMQFGPEWICDQIKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+FMPK DRPHYLVVNADESEPGTCKDRDIMRH+PH LIEGC+IAS+A+ A+ Sbjct: 61 PTGLKWTFMPKEVKDRPHYLVVNADESEPGTCKDRDIMRHDPHLLIEGCLIASYAMRANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+I ERE LQ A++E Y +GL+G N+ G+D D+ VHHGAGAYICGEETALL Sbjct: 121 CYIYLRGEYIFERERLQQAINEAYKAGLIGKNACGSGWDFDLHVHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W+ FGR+NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGAGWFKKFGRDNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+ISGHVN PC VEE MSI L+E HCGG+RGGW+NL AVIPGGSSVP +P Sbjct: 241 KVFAISGHVNRPCNVEEEMSIPLKTLLETHCGGVRGGWENLKAVIPGGSSVPMIPKDICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVMD+STD+++AI RL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDALREVQSGLGTAAVIVMDQSTDVVRAIARLAYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+VKG A+ EID+L +VS IEG TICALGDAAAWP+QGLI++FR IEERI Y Sbjct: 361 RVLTRMVKGEAEASEIDMLLDVSYQIEGHTICALGDAAAWPVQGLIRHFRSEIEERISSY 420 >gi|83592895|ref|YP_426647.1| NADH dehydrogenase I subunit F [Rhodospirillum rubrum ATCC 11170] gi|83575809|gb|ABC22360.1| NADH-quinone oxidoreductase, F subunit [Rhodospirillum rubrum ATCC 11170] Length = 429 Score = 614 bits (1583), Expect = e-174, Method: Compositional matrix adjust. Identities = 295/417 (70%), Positives = 338/417 (81%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L+ + RG WD IL KGRD IINE+KASGLRGRGGAGF Sbjct: 1 MLNDKDRIFTNLYGFQDWRLAGARKRGDWDGTGAILAKGRDGIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +RPHYLVVNADE EPGTCKDRD+MR +PH LIEGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKDIGERPHYLVVNADEGEPGTCKDRDMMRFDPHKLIEGCLIAGFAMGAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF RE E L+ A+ E +GLLG N+ G+D+++ VH GAGAYICGEETAL+ Sbjct: 121 AYIYIRGEFFREAEHLEFAIAEAREAGLLGPNACGSGWDMEVYVHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++G GRENN GT Sbjct: 181 QSLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGRENNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I ELI+KH GG+RGGWDNLL VIPGG+SVP LP Sbjct: 241 KVFCISGHVNKPCNVEEEMGIPLRELIDKHAGGVRGGWDNLLGVIPGGASVPVLPRELCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTAAV+VMD+STDI++AI RLS FY HESCGQCTPCREGTGW+ Sbjct: 301 DVLMDFDSLKAVKSGLGTAAVMVMDKSTDIVRAIARLSAFYTHESCGQCTPCREGTGWLS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLV G A EID+L +V++ IEG TICALGDAAAWPIQGLI++FRP IE RI Sbjct: 361 RVMTRLVNGDAAIEEIDVLEQVTRQIEGHTICALGDAAAWPIQGLIRHFRPEIERRI 417 >gi|16126190|ref|NP_420754.1| NADH dehydrogenase I subunit F [Caulobacter crescentus CB15] gi|221234961|ref|YP_002517397.1| NADH dehydrogenase I subunit F [Caulobacter crescentus NA1000] gi|13423406|gb|AAK23922.1| NADH dehydrogenase I, F subunit [Caulobacter crescentus CB15] gi|220964133|gb|ACL95489.1| NADH-quinone oxidoreductase chain F [Caulobacter crescentus NA1000] Length = 439 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 294/420 (70%), Positives = 339/420 (80%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGL L + RG W+ IL+ GRDWII +K SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGLHDWGLEGAKKRGCWNGTKDILDAGRDWIIENMKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH Sbjct: 64 STGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++ ERE L+AA+ + Y + L+G N+ G+D DI VHHGAGAYICGEETALL Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGAGAYICGEETALL 183 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYG PTTVNNVESIAV TILRRGA+W++GFGR NN GT Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLVEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 304 DLPMDFDALRNLKSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+V G A +EID L +V+ +EG TICALGDAAAWPIQGL ++FR +EERI Y Sbjct: 364 RVMERMVTGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423 >gi|308811771|ref|XP_003083193.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS) [Ostreococcus tauri] gi|116055072|emb|CAL57468.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS) [Ostreococcus tauri] Length = 491 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 285/416 (68%), Positives = 340/416 (81%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L +M+RG W K++E G DWI+NE+KASGLRGRGGAGF Sbjct: 65 LSDADRIFTNLYGRHDPFLKGAMARGDWYETKKLVELGADWIVNEMKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A A Sbjct: 125 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 184 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A+ E YA+G LG ++ G D D+ +H+GAGAYICGEETAL+E Sbjct: 185 YIYIRGEYVNERLALERALAEAYAAGFLGKDACGTGLDFDVNIHYGAGAYICGEETALIE 244 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 245 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGPEWFASFGRKNNAGTK 304 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGWDNLLAVIPGGSSVP + Sbjct: 305 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAVIPGGSSVPMITKDVCDD 364 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK +GSGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 365 VLMDFDALKGVGSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTSWIYN 424 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +M+RLVKG A+ E+++L E++K IEG TICALGDAAAWP+QGL+KNF PLI ERI Sbjct: 425 IMKRLVKGDARLEEVEMLQEITKQIEGHTICALGDAAAWPVQGLLKNFSPLIRERI 480 >gi|326490041|dbj|BAJ94094.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326490708|dbj|BAJ90021.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 505 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 289/416 (69%), Positives = 336/416 (80%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W+ ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAMKRGDWNRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YASGLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYASGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAV+VMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVMVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 491 >gi|295689621|ref|YP_003593314.1| NADH-quinone oxidoreductase subunit F [Caulobacter segnis ATCC 21756] gi|295431524|gb|ADG10696.1| NADH-quinone oxidoreductase, F subunit [Caulobacter segnis ATCC 21756] Length = 439 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 294/420 (70%), Positives = 341/420 (81%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGLQ L + RG W+ IL+ GRDWII+ +K SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK V RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ A+ Sbjct: 64 STGLKWSFMPKEVKEGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAN 123 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++ ERE L+AA+ + Y + L+G N+ G+D D+ VHHGAGAYICGEETALL Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYG PTTVNNVESIAV TILRRGA+W++GFGR NN GT Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ + SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKSTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+ G A +EID L +V+ +EG TICALGDAAAWPIQGL ++FR +EERI Y Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423 >gi|46202357|ref|ZP_00208485.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 427 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 295/419 (70%), Positives = 335/419 (79%), Gaps = 1/419 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTNLYG L + SRG WDN IL+KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLRDSDRIFTNLYGFHDWRLKGAQSRGDWDNTKAILDKGRDWIIEEMKNSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IA FAIGAH Sbjct: 61 PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIACFAIGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF+ E E L A+ E A+GLLG N+ G+D ++ VH GAGAYICGEE+AL+ Sbjct: 121 AYIYIRGEFVLEAEHLNTAIAEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I +LIEKH GG+RGGWDNLLA+IPGGSSVP L Q Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKDLIEKHAGGVRGGWDNLLAIIPGGSSVPMLNKQQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ M SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 EVTMDFDALRAMRSGLGTAAVIVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+M R+V G A+ EIDLL EVS+ IEG TICALGDAAAWPIQGLI+ FRP +E RI + Sbjct: 361 RMMGRMVTGDAELSEIDLLEEVSRQIEGHTICALGDAAAWPIQGLIRTFRPEMERRIKE 419 >gi|168003423|ref|XP_001754412.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694514|gb|EDQ80862.1| predicted protein [Physcomitrella patens subsp. patens] Length = 462 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 286/416 (68%), Positives = 335/416 (80%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L+ + RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 31 LKDEDRIFTNLYGLHDPFLAGAKKRGDWYRTKDLVHKGTDWIVNEVKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 91 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +LQ A+ ECY GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGLLGKNACSTGYDFDVYIHYGAGAYICGEETALLE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 211 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 271 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+ Sbjct: 331 VLMDFDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLWT 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI Sbjct: 391 MMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 446 >gi|303278834|ref|XP_003058710.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459870|gb|EEH57165.1| predicted protein [Micromonas pusilla CCMP1545] Length = 468 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 287/417 (68%), Positives = 337/417 (80%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W N ++ G DWI+NE+KASGLRGRGGAGF Sbjct: 42 LKDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKDLMLMGPDWIVNEIKASGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A Sbjct: 102 SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A DE YA+G LG N+ G D DI +H+GAGAYICGEETAL+E Sbjct: 162 YIYIRGEYVNERLNLERARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W+S FGR+NN GTK Sbjct: 222 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGAEWFSSFGRKNNAGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 282 LFCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKKICEE 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 342 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYN 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 VMER+ KG A+ EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+ Sbjct: 402 VMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 458 >gi|302791665|ref|XP_002977599.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii] gi|300154969|gb|EFJ21603.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii] Length = 483 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 286/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG+ L +M+RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 53 LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 112 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 113 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 172 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ AV E YA+G +G N+ GYD DI VH GAGAYICGEETALLE Sbjct: 173 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 232 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 233 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 292 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 293 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 352 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 353 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 412 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +MER+ G A EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI Sbjct: 413 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 468 >gi|255547796|ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] gi|223546006|gb|EEF47509.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] Length = 486 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 288/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERINLERARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 298 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 358 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 475 >gi|209964545|ref|YP_002297460.1| NADH dehydrogenase I subunit F [Rhodospirillum centenum SW] gi|209958011|gb|ACI98647.1| NADH-quinone oxidoreductase chain F [Rhodospirillum centenum SW] Length = 433 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 297/421 (70%), Positives = 334/421 (79%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG + L + RG WDN IL GRD II VK SGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNLYGFEDFRLEAARRRGDWDNTQDILALGRDRIIELVKESGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK P YLVVNADE EPGTCKDRDI+RH+PH L+EGC+IA FAIGA Sbjct: 61 STGMKWSFMPKKSDGGPVYLVVNADEGEPGTCKDRDILRHDPHKLVEGCLIAGFAIGATA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E +Q A+DE YA+GL+G N+ GYD DI +H GAGAYICGEETAL+ Sbjct: 121 CYIYIRGEFYDEGSHVQQAIDEAYAAGLIGRNACGSGYDFDIYLHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPA GLY PTTVNNVE+IAVVPTILRRGA+W++G GR N GT Sbjct: 181 ESLEGKKGQPRNKPPFPAMAGLYARPTTVNNVETIAVVPTILRRGATWFAGLGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I EL+EKH GG+RGGWDNLLA+IPGGSSVP LP Sbjct: 241 KVFCISGHVNRPCNVEEEMGIPLRELVEKHAGGVRGGWDNLLAIIPGGSSVPMLPRETCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVMDRSTD++KAI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 TVLMDFDSLREVRSGLGTAAVIVMDRSTDVVKAIARLSKFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+VKG A+ EID+L +VSK IEG TICALGDAAAWPIQGLI+NFRP +E RI +Y Sbjct: 361 RVMERMVKGQARIEEIDMLLDVSKEIEGHTICALGDAAAWPIQGLIRNFRPEMERRILEY 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|302786848|ref|XP_002975195.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii] gi|300157354|gb|EFJ23980.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii] Length = 460 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 286/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG+ L +M+RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 30 LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 89 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 90 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 149 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ AV E YA+G +G N+ GYD DI VH GAGAYICGEETALLE Sbjct: 150 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 209 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 210 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 269 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 270 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 329 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 330 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 389 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +MER+ G A EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI Sbjct: 390 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 445 >gi|330994059|ref|ZP_08317989.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1] gi|329759005|gb|EGG75519.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1] Length = 454 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 289/420 (68%), Positives = 339/420 (80%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG +L+ + +RG WD +IL +GRD IINE+KASGLRGRGGAGF Sbjct: 14 MLQDKDRIFTNLYGQGDWTLAGARARGDWDGTAEILARGRDAIINEMKASGLRGRGGAGF 73 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR+I+RH+PH L+E +IASFA+GAH Sbjct: 74 PTGVKWSFMPKKNDGRPHYLVINGDESEPGTCKDREILRHDPHKLVESALIASFAMGAHA 133 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE YA+GL+G N+ G+D D +H GAGAYICGEETALL Sbjct: 134 AYIYIRGEFYNEAMHLQHAIDEAYAAGLIGPNACGSGWDFDFYIHRGAGAYICGEETALL 193 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV TILRRGA+W+SG GR NN GT Sbjct: 194 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVSATILRRGAAWFSGLGRPNNAGT 253 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + ELIEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 254 KLMAISGHVNTPCVFEEELGVPMRELIEKHGGGVRGGWDNLLAVIPGGCSVPMLPRDVCD 313 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ GSGLGT +IVMD+STDII AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 314 TVLMDYDSLRAEGSGLGTGCMIVMDKSTDIIAAIARFSKFFKHESCGQCTPCREGTGWMM 373 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M+R+V+G A+ EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI Y Sbjct: 374 RIMDRMVQGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIRAY 433 >gi|224110746|ref|XP_002315622.1| predicted protein [Populus trichocarpa] gi|222864662|gb|EEF01793.1| predicted protein [Populus trichocarpa] Length = 485 Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust. Identities = 286/418 (68%), Positives = 335/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL L +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 57 LKDEDRIFTNVYGLHDPFLKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 116 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 117 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 176 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 177 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 236 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 237 SLEGKQGKPRLKPPFPANSGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 296 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 297 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 356 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 357 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 416 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 417 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 474 >gi|255078918|ref|XP_002503039.1| predicted protein [Micromonas sp. RCC299] gi|226518305|gb|ACO64297.1| predicted protein [Micromonas sp. RCC299] Length = 441 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 284/417 (68%), Positives = 338/417 (81%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RG W N +++ G DWI+NE+KASGLRGRGGAGF Sbjct: 15 LSDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKELMLMGPDWIVNEMKASGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A Sbjct: 75 SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A DE YA+G LG N+ G D DI +H+GAGAYICGEETAL+E Sbjct: 135 YIYIRGEYVNERLALMKARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK Sbjct: 195 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 254 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 255 LFCISGHVNKPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKSVCEE 314 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 315 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYA 374 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +MER+ KG A+ EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+ Sbjct: 375 IMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 431 >gi|159489210|ref|XP_001702590.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas reinhardtii] gi|158280612|gb|EDP06369.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas reinhardtii] Length = 484 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 283/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF N+YG S+ +MSRG W +I+ KGRDWII+++K SGLRGRGGAGF Sbjct: 56 LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A A+GA Sbjct: 116 SGLKWSFMPKASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF++ER +++ A+ E YA G LG N+ G D D++VH+GAGAYICGEETAL+E Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN P TVEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP LP G Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR +EERI Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERI 471 >gi|226532265|ref|NP_001148767.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] gi|195621992|gb|ACG32826.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] Length = 504 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 285/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L ++ RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E+RI + Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELEKRIRE 493 >gi|34328784|gb|AAQ63696.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlamydomonas reinhardtii] Length = 484 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 283/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF N+YG S+ +MSRG W +I+ KGRDWII+++K SGLRGRGGAGF Sbjct: 56 LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A A+GA Sbjct: 116 SGLKWSFMPKASDSRPIYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF++ER +++ A+ E YA G LG N+ G D D++VH+GAGAYICGEETAL+E Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN P TVEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP LP G Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR +EERI Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERI 471 >gi|296116530|ref|ZP_06835140.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC 23769] gi|295976742|gb|EFG83510.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC 23769] Length = 441 Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust. Identities = 285/420 (67%), Positives = 338/420 (80%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L+ + RG W++ IL +GRD II E+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGQNDWRLAGARQRGDWNDTAAILARGRDAIIAEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR+I+RH+PH LIE +IASFA+GAH Sbjct: 61 PTGVKWSFMPKTSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHK 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF E + LQ A++E Y +GL+G N+ G+D D +H GAGAYICGEETALL Sbjct: 121 SYIYIRGEFFNEAQHLQHAIEEAYEAGLIGPNAAGSGWDFDFYIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV TILRRGA+W+SG GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVTSTILRRGAAWFSGLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + ++IEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLRDIIEKHGGGVRGGWDNLLAVIPGGCSVPMLPREVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ GSGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAEGSGLGTACMIVMDKSTDIIRAIARFSQFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+R+V+G A+ EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI Y Sbjct: 361 RVMQRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIHAY 420 >gi|91205998|ref|YP_538353.1| NADH dehydrogenase I subunit F [Rickettsia bellii RML369-C] gi|157826638|ref|YP_001495702.1| NADH dehydrogenase I subunit F [Rickettsia bellii OSU 85-389] gi|122425283|sp|Q1RHA0|NUOF_RICBR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|166918573|sp|A8GYE0|NUOF_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|91069542|gb|ABE05264.1| NADH dehydrogenase I chain F [Rickettsia bellii RML369-C] gi|157801942|gb|ABV78665.1| NADH dehydrogenase I chain F [Rickettsia bellii OSU 85-389] Length = 417 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 295/417 (70%), Positives = 331/417 (79%), Gaps = 2/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIFTNL+G Q L S G WDN +L KG++WII EVK SGLRGRGGAGF Sbjct: 1 MLKKEDRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG KWSFMPK S +P YLVVNADESEPGTCKDRDI+R+EPH LIEGC++ASFAIGA+ Sbjct: 61 STGTKWSFMPKE-SKKPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANS 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G++ DI +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I E+IEKH GG+RGGWDNL A+IPGGSSVP LP Sbjct: 240 KIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+D LK GS LGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLVKG A+K EID L EV+K IEG TICALGDAAAWPIQGLIK+FR IE RI Sbjct: 360 RVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRI 416 >gi|307136131|gb|ADN33976.1| NADH-ubiquinone oxidoreductase flavoprotein [Cucumis melo subsp. melo] Length = 480 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 285/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 52 LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 111 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 112 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATAA 171 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 172 YIYIRGEYVNERKNLEKARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 231 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 232 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 291 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 292 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 351 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STDI+ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 352 VLMDYDALKAVQSGLGTAAVIVMDKSTDIVDAIARLSYFYKHESCGQCTPCREGTGWLWM 411 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLIKNF Sbjct: 412 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIKNF 459 >gi|168052872|ref|XP_001778863.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669732|gb|EDQ56313.1| predicted protein [Physcomitrella patens subsp. patens] Length = 463 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 284/417 (68%), Positives = 335/417 (80%), Gaps = 2/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG+ L+ + RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 31 LKDEDRIFTNLYGIHDPFLAGAKKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 91 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASG-LLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++ ER +LQ A+ ECY G LLG N+ GYD D+ +H+GAGAYICGEETALL Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGSLLGKNACGSGYDFDVYIHYGAGAYICGEETALL 210 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GT Sbjct: 211 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGT 270 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 271 KLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKNICD 330 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+ Sbjct: 331 DVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLW 390 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI Sbjct: 391 TMMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 447 >gi|147841727|emb|CAN73193.1| hypothetical protein VITISV_022287 [Vitis vinifera] Length = 489 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 60 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 120 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 179 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 180 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACXSGYDFDVHIHYGAGAYICGEETALLE 239 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++GFGR+NN GTK Sbjct: 240 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 299 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 300 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 359 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ Sbjct: 360 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 419 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 420 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 467 >gi|297810971|ref|XP_002873369.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp. lyrata] gi|297319206|gb|EFH49628.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp. lyrata] Length = 486 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 282/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 LTD+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LTDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|157964179|ref|YP_001499003.1| NADH dehydrogenase I subunit F [Rickettsia massiliae MTU5] gi|166918575|sp|A8F0M0|NUOF_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|157843955|gb|ABV84456.1| NADH dehydrogenase I chain F [Rickettsia massiliae MTU5] Length = 421 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 294/420 (70%), Positives = 338/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNACDSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-LLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVEMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Y Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418 >gi|225462161|ref|XP_002266661.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 487 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++GFGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 298 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ Sbjct: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|302833609|ref|XP_002948368.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f. nagariensis] gi|300266588|gb|EFJ50775.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f. nagariensis] Length = 489 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 283/418 (67%), Positives = 335/418 (80%), Gaps = 3/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+YG S+ +MSRG W +++ KGRDWII+++K SGLRGRGGAGF Sbjct: 59 LKDDDRIFQNIYGRHDTSIKGAMSRGDWYMTKELVLKGRDWIIDQMKKSGLRGRGGAGFP 118 Query: 62 TGMKWSFMPKVCSD--RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 +G+KWSFMPK + RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA A+GA Sbjct: 119 SGLKWSFMPKAMASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVAMGAR 178 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+RGEF+ ER S+ A+DE YA G LG N+ G D D++VH+GAGAYICGEETAL Sbjct: 179 AGYIYIRGEFVNERRSVMRAIDEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETAL 238 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG W+S FGR+NN G Sbjct: 239 IESLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAG 298 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP L Sbjct: 299 TKLFCISGHVNRPCTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLTKKLC 358 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 359 DTVLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWL 418 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR +E+RI Sbjct: 419 YDIMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRI 476 >gi|125601292|gb|EAZ40868.1| hypothetical protein OsJ_25349 [Oryza sativa Japonica Group] Length = 514 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 86 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 145 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 146 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 205 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 206 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 265 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 266 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 325 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 326 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 385 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 386 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 445 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 446 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 493 >gi|115473713|ref|NP_001060455.1| Os07g0645400 [Oryza sativa Japonica Group] gi|23307584|dbj|BAC16718.1| putative NADH dehydrogenase [Oryza sativa Japonica Group] gi|113611991|dbj|BAF22369.1| Os07g0645400 [Oryza sativa Japonica Group] Length = 504 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|329889336|ref|ZP_08267679.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC 11568] gi|328844637|gb|EGF94201.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC 11568] Length = 437 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 285/426 (66%), Positives = 336/426 (78%), Gaps = 2/426 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RG W+ +L+ GRDWII VK SGLRGRGGAGF Sbjct: 4 ILQDKDRIFTNLYGFHDWGLEGAKKRGAWNATKDMLDLGRDWIIANVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLV+NADESEP TCKDR+IMRH+P LIEG +IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVINADESEPATCKDREIMRHDPQLLIEGALIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE ++AAV + Y + L+G ++ G+D + +HHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYILERERMEAAVKQAYEAKLIGDDNVHGWDFHVYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGADWFAGFGRPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L S+SGHVN PC VEE+MSI +LIE H GG+RGGW+NL A+IPGG+S P + Q Sbjct: 244 LMSLSGHVNTPCVVEEAMSIPLRQLIEDHGGGVRGGWENLKAIIPGGASCPVITREQAEV 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D ++EM S LGTA V VMD+STDI+KAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 304 ALMDFDSMREMRSSLGTAGVTVMDQSTDIVKAIARISYFFKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 V+ER+ G A EIDLL +V+ +EG TICALGDAAAWP+QGLI++FR IEERI Y Sbjct: 364 VLERMAIGDADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIHTYR 423 Query: 420 -HRCNF 424 R NF Sbjct: 424 SRRANF 429 >gi|125559373|gb|EAZ04909.1| hypothetical protein OsI_27090 [Oryza sativa Indica Group] Length = 529 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 101 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 160 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 161 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 220 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 221 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 280 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 281 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 340 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 341 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 400 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 401 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 460 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 461 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 508 >gi|67459570|ref|YP_247194.1| NADH dehydrogenase I subunit F [Rickettsia felis URRWXCal2] gi|75536030|sp|Q4UKA6|NUOF_RICFE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|67005103|gb|AAY62029.1| NADH dehydrogenase I chain F [Rickettsia felis URRWXCal2] Length = 422 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 295/420 (70%), Positives = 337/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG WDN +L+KGR++II EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S +P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SAKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG AQK EID L V+K IEG TICALGDAAAWPIQGLI++FR IEERI + Sbjct: 359 RVMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIKGW 418 >gi|163793192|ref|ZP_02187168.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199] gi|159181838|gb|EDP66350.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199] Length = 434 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 287/420 (68%), Positives = 333/420 (79%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YG L + RG W N +L + + ++ VKASGLRGRGGAGF Sbjct: 1 MLKDDDRIFTNVYGWFDWGLDGARKRGDWSNTKALLAQTPEELVEAVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK ++PHYLVVNADESEPGTCKDRDI+RHEPH LIEGC+I +++ A Sbjct: 61 PTGLKWSFMPKEVKEKPHYLVVNADESEPGTCKDRDILRHEPHKLIEGCLIGGYSMRAKA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E ++LQAA+D+ Y +GL+G N+ GYD D+ +H GAGAYICGEETALL Sbjct: 121 AYIYIRGEFYNEAQNLQAAIDQAYDAGLIGKNACGSGYDFDVFLHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVPTILRRG W++ GR N GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPTILRRGPEWFAALGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE + I ELI+KH GG+ GGWDNLL VIPGGSSVP LP Sbjct: 241 KLFCISGHVNNPCNVEEELGIPLRELIDKHAGGVIGGWDNLLGVIPGGSSVPVLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVM++STDI+KAI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLREVRSGLGTAAVIVMNQSTDIVKAIARLSAFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+V+G A EID+L EVS+ IEG TICALGDAAAWP+QGLI++FRP +E RI Y Sbjct: 361 RVMERMVRGEADVDEIDVLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRPEMERRIAAY 420 >gi|144899470|emb|CAM76334.1| NADH-quinone oxidoreductase, F subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 425 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 300/417 (71%), Positives = 341/417 (81%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ L + SRG WDN +L KGRD II EVK SGLRGRGGAGF Sbjct: 1 MLRDQDRIFTNLYGIHDWRLKGAQSRGDWDNTKALLAKGRDAIIEEVKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLV+NADE EPGTCKDR+IMR +PH L+EG ++ASFAIGAH Sbjct: 61 GTGMKWSFMPKTEGARPHYLVINADEGEPGTCKDREIMRFDPHKLVEGALLASFAIGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF+RE E LQ A+DE YA+GL+G N+ G+D D+ VH GAGAYICGEE+AL+ Sbjct: 121 SYIYIRGEFVREAEHLQVAIDEAYAAGLIGKNACGSGWDFDLYVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVP ILRR +W++G GR N GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPAILRRSGAWFAGLGRAKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I+F ELI+KHCGGIRGGWDNL+ VIPGG S P L + Sbjct: 241 KLFCISGHVNKPCNVEEEMGISFRELIDKHCGGIRGGWDNLMGVIPGGCSTPVLTREVIE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+DGL+E GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 NCPMDFDGLREAGSGLGTAAVIVMDKSTDIVRAITRLSRFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+MER+ KG A EIDLL +V+K +EG TICALGDAAAWPIQGLI+NFRP IE++I Sbjct: 361 RMMERMDKGDATIEEIDLLQQVTKQVEGHTICALGDAAAWPIQGLIRNFRPEIEKKI 417 >gi|330843279|ref|XP_003293586.1| ubiquinone oxidoreductase [Dictyostelium purpureum] gi|325076073|gb|EGC29892.1| ubiquinone oxidoreductase [Dictyostelium purpureum] Length = 477 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 283/420 (67%), Positives = 334/420 (79%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +M RG W I++KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 50 LKDQDRIFTNLYGEHDVYLKGAMLRGDWYRTKDIIDKGKDWILKEMMASGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RPHYLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A A Sbjct: 110 SGLKWSFMPKVLKGRPHYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMKACAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + L+ A++E Y +GL+G N S GY D+ VH GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFHYEAKVLEQAIEEAYKAGLIGENASGTGYKFDVYVHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++GFGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNAGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI ELI+KHCGG+ GGW+NL VIPGGSSVP LP Sbjct: 290 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWENLKGVIPGGSSVPVLPKNICDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L++ SGLGTAAVIVM++ TD+IKAI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 350 VLMDFDDLRKHRSGLGTAAVIVMNKETDMIKAIARLSKFYKHESCGQCTPCREGTGWLWD 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + ERLV G A+ EID+L E+SK IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ Sbjct: 410 ITERLVTGDAKLDEIDMLEEISKQIEGHTICALGDAAAWPVQGLIRSFRPEIEDRIKQFQ 469 >gi|148259937|ref|YP_001234064.1| NADH dehydrogenase I subunit F [Acidiphilium cryptum JF-5] gi|326403109|ref|YP_004283190.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] gi|146401618|gb|ABQ30145.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5] gi|325049970|dbj|BAJ80308.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] Length = 431 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 285/420 (67%), Positives = 339/420 (80%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+D+DRI+TNLYGL L+ + +RG WD IL +GRD II E+K+SGLRGRGGAGF Sbjct: 1 MLSDRDRIYTNLYGLHDWRLAGARARGDWDGTKDILARGRDAIIEEIKSSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RP YLV+NADESEPGTCKDRDI+RHEPH L+EG +IA FA+GAH Sbjct: 61 PTGMKWSFMPKETDGRPSYLVINADESEPGTCKDRDILRHEPHKLVEGALIAGFAMGAHR 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 AFIYVRGE+ E ++LQAAVDE +GLLG ++ G+ DI VH GAGAYICGEE+AL+ Sbjct: 121 AFIYVRGEYYNEYKNLQAAVDEAREAGLLGDDACGSGWAFDITVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA +GLYGCPTTVNNVE+IA V TI+RRGA+W+S GR N GT Sbjct: 181 ESIEGKKGLPRMKPPFPAALGLYGCPTTVNNVETIAGVATIMRRGAAWFSALGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEKH GG+RGGWDNL AVIPGGSSV +P Sbjct: 241 KIFCISGHVNRPCNVEEELGIPLRELIEKHAGGVRGGWDNLQAVIPGGSSVHMIPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+E +GLGTAAVIVMD+STD+I+AI RL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLREQRTGLGTAAVIVMDKSTDLIRAIARLAAFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M RLV+G A+ +IDLL +V+K +EG TIC LGDAAAWPIQGL+++FRP++E+RI Y Sbjct: 361 RMMYRLVEGRAEIADIDLLEQVTKQVEGHTICPLGDAAAWPIQGLLRHFRPVVEQRIADY 420 >gi|114569910|ref|YP_756590.1| NADH dehydrogenase I subunit F [Maricaulis maris MCS10] gi|114340372|gb|ABI65652.1| NADH dehydrogenase subunit F [Maricaulis maris MCS10] Length = 437 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 280/419 (66%), Positives = 334/419 (79%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNL+G L + RG W+ +IL++GRDWII +KASGLRGRGGAGF Sbjct: 5 LLQDKDRIFTNLFGHHSPDLEGAKQRGCWNGTTEILQQGRDWIIENMKASGLRGRGGAGF 64 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASF++ AH Sbjct: 65 PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFSMQAHA 124 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +++ AV E Y + L+G ++ G+ + +HHGAGAYICGEETALLE Sbjct: 125 CYIYLRGEYVTERLAMEKAVKEAYEAKLIGDDNIHGWPFHVYIHHGAGAYICGEETALLE 184 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV TILRRGA W++ FGRE N GTK Sbjct: 185 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAGTILRRGAEWFASFGRERNVGTK 244 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FSISGHVN PC VEE+MSI LIE H GG+RGGWDNL AVIPGGSSV LP Sbjct: 245 IFSISGHVNNPCNVEEAMSIPMKTLIETHAGGVRGGWDNLKAVIPGGSSVSLLPKDICDD 304 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVMD+STD++KAI R+S FY+HESCGQCTPCREGTGWM R Sbjct: 305 VLMDFDALSAHKSGLGTAAVIVMDKSTDVVKAIARISYFYRHESCGQCTPCREGTGWMWR 364 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ R+ +G + EID+L +V+ +EG TICALGDAAAWP+QGLI++FR IE+RI+ Y Sbjct: 365 VLTRMSRGESTIEEIDMLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRSEIEDRINNY 423 >gi|15242306|ref|NP_196470.1| CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH [Arabidopsis thaliana] gi|9759347|dbj|BAB10002.1| NADH dehydrogenase [Arabidopsis thaliana] gi|20260144|gb|AAM12970.1| NADH dehydrogenase [Arabidopsis thaliana] gi|30387597|gb|AAP31964.1| At5g08530 [Arabidopsis thaliana] gi|332003932|gb|AED91315.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Arabidopsis thaliana] Length = 486 Score = 598 bits (1541), Expect = e-169, Method: Compositional matrix adjust. Identities = 280/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD ++ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|194700414|gb|ACF84291.1| unknown [Zea mays] gi|195621570|gb|ACG32615.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] gi|238010292|gb|ACR36181.1| unknown [Zea mays] Length = 504 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 281/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L+EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|21593325|gb|AAM65274.1| NADH dehydrogenase [Arabidopsis thaliana] Length = 486 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 279/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD ++ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF IS HVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 298 LFCISXHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|51473234|ref|YP_066991.1| NADH dehydrogenase I subunit F [Rickettsia typhi str. Wilmington] gi|81390307|sp|Q68XY3|NUOF_RICTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|51459546|gb|AAU03509.1| NADH dehydrogenase (ubiquinone) subunit F [Rickettsia typhi str. Wilmington] Length = 421 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 292/420 (69%), Positives = 336/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IF NLYG Q L S RG W N +L+KGRD+II+EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFINLYGQQSYDLKSSKKRGDWYNTKALLDKGRDFIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYTEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC +EE+M I ELIEK+ GG+RGGWDNL A+IPGG+SVP LP + Sbjct: 240 KIFCISGHVNKPCNIEEAMGIPLKELIEKYAGGVRGGWDNLKAIIPGGASVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GSGLGT +IVMDRSTDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDRSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLV G A+K EI+ L V+K IEG TICALGDAAAWPIQGLI++FR IEERI + Sbjct: 359 RVMMRLVNGNAKKTEIETLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEERIKNF 418 >gi|296536151|ref|ZP_06898279.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC 49957] gi|296263522|gb|EFH10019.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC 49957] Length = 435 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 288/422 (68%), Positives = 333/422 (78%), Gaps = 2/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYGL +L ++ RG WD I+ KGRDWII E+K SGLRGRGGAGF Sbjct: 3 LSDKDRIFTNLYGLHPWNLKEARRRGSWDGTAAIIAKGRDWIIEEMKQSGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D RP YLVVN DESEPGTCKDRDI+R++PH LIEGC+ A +GAH Sbjct: 63 TGMKWSFMPKSNPDGRPSYLVVNGDESEPGTCKDRDIIRNDPHLLIEGCLYAGVGMGAHA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGE+ E + LQAA+DE Y +GLLG N+ G+D D+ VH GAGAYICGEETAL+ Sbjct: 123 GYIYVRGEYYNEIQILQAAIDEAYEAGLLGPNAAGSGWDFDLYVHRGAGAYICGEETALI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA VGLYGCPTTVNNVE+IAVVP IL+RGASW+S FGR N GT Sbjct: 183 ESLEGKKGMPRLKPPFPAAVGLYGCPTTVNNVETIAVVPAILKRGASWFSSFGRPKNVGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F I GHVN PC VE MSI ELIE++ GG+RGGWDNLLAVIPGGSS P LP Sbjct: 243 KIFCIQGHVNKPCNVEAEMSIPMRELIERYAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E SGLGTA VIVMD+STDIIKAI RL+ FYKHESCGQCTPCREG GW Sbjct: 303 DVLMDFDALREHKSGLGTAGVIVMDKSTDIIKAIARLAQFYKHESCGQCTPCREGMGWQK 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M+R+V+G A+ EIDLL V++ IEG TICAL D WP+QGLI++FRPL+EERI QY Sbjct: 363 RLMDRMVEGRAEIEEIDLLEGVTRQIEGHTICALADGGVWPVQGLIRHFRPLMEERIRQY 422 Query: 420 HR 421 + Sbjct: 423 KQ 424 >gi|226529035|ref|NP_001141093.1| hypothetical protein LOC100273176 [Zea mays] gi|194702602|gb|ACF85385.1| unknown [Zea mays] Length = 504 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 280/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIP GSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPSGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L+EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|225708652|gb|ACO10172.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Osmerus mordax] Length = 472 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 278/420 (66%), Positives = 336/420 (80%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLYG L ++SRG W +IL KG DWIINE+K+SGLRGRGGAGF Sbjct: 46 LSDQDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGVDWIINEIKSSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A +GA A Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRCMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E YA+GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNESSNLQVAINEAYANGLIGRNACGSGYDFDVFVMRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN P TVEE MSI ELIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 286 LFNISGHVNTPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAVIPGGSSTPMIPRSVCET 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + +GLGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM Sbjct: 346 VLMDFDGLIQAQTGLGTAAIIVMDKSTDVIKAIARLIEFYKHESCGQCTPCREGVDWMNT 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G A++ EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ Sbjct: 406 MMWRFVRGDAKEAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEFQ 465 >gi|238650711|ref|YP_002916564.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic] gi|238624809|gb|ACR47515.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic] Length = 421 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 292/420 (69%), Positives = 335/420 (79%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQHALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Y Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418 >gi|239948357|ref|ZP_04700110.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of Ixodes scapularis] gi|239922633|gb|EER22657.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of Ixodes scapularis] Length = 417 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 293/417 (70%), Positives = 336/417 (80%), Gaps = 3/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+II EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+ +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNETSNIQRALDEAYKEGLIGKNACGSGFYCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+R GWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRDGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IEERI Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERI 415 >gi|15603992|ref|NP_220507.1| NADH dehydrogenase I subunit F [Rickettsia prowazekii str. Madrid E] gi|7387969|sp|Q9ZE33|NUOF_RICPR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|3860683|emb|CAA14584.1| NADH DEHYDROGENASE I CHAIN F (nuoF) [Rickettsia prowazekii] gi|292571708|gb|ADE29623.1| NADH dehydrogenase I chain F [Rickettsia prowazekii Rp22] Length = 421 Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust. Identities = 289/420 (68%), Positives = 336/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNLYG Q L S RG W N +++KGRD+II+EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLYGQQSYDLKSSQKRGDWYNTKALIDKGRDFIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC +EE M + ELIEK+ GG+RGGW+NL A+IPGG+SVP LP + Sbjct: 240 KVFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNLKAIIPGGASVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLV G A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE+RI + Sbjct: 359 RVMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIKSF 418 >gi|157828027|ref|YP_001494269.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932725|ref|YP_001649514.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. Iowa] gi|166918576|sp|A8GQT6|NUOF_RICRS RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|27312012|gb|AAO00970.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800508|gb|ABV75761.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907812|gb|ABY72108.1| NADH-quinone oxidoreductase chain F [Rickettsia rickettsii str. Iowa] Length = 421 Score = 594 bits (1531), Expect = e-168, Method: Compositional matrix adjust. Identities = 292/420 (69%), Positives = 334/420 (79%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Y Sbjct: 359 RVMMRLVKGNVTKSEIDELLNVTKAIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418 >gi|289743527|gb|ADD20511.1| NADH dehydrogenase flavoprotein 1 ubiquinone [Glossina morsitans morsitans] Length = 474 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 278/419 (66%), Positives = 331/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L+ ++ RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LADQDRIFTNLYGRHDWRLNGALKRGDWYKTKEIVLKGADWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ A Sbjct: 110 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGAWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSIT ELIE+H GG+ GGW+NLLAVIPGGSS P +P Sbjct: 290 LFNISGHVNTPCTVEEEMSITLKELIERHAGGVCGGWENLLAVIPGGSSTPLIPKKVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DGL + LGTAA+IVMD+STDIIKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 AIMDFDGLIAAQTSLGTAAIIVMDKSTDIIKAIARLIEFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R V G AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y Sbjct: 410 IMARFVSGNAQAAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKY 468 >gi|157825290|ref|YP_001493010.1| NADH dehydrogenase I subunit F [Rickettsia akari str. Hartford] gi|166918572|sp|A8GM77|NUOF_RICAH RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|157799248|gb|ABV74502.1| NADH dehydrogenase I chain F [Rickettsia akari str. Hartford] Length = 423 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 292/420 (69%), Positives = 337/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG WDN +L+KGRD+II E+K SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGGQIHDLKSSKKRGDWDNTKALLDKGRDFIIEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y L+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRR ASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRRASWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE+RI Y Sbjct: 359 RVMIRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEDRIKSY 418 >gi|194760181|ref|XP_001962320.1| GF15407 [Drosophila ananassae] gi|190616017|gb|EDV31541.1| GF15407 [Drosophila ananassae] Length = 477 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGNWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ QY Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEVEKRMQQY 468 >gi|15892078|ref|NP_359792.1| NADH dehydrogenase I subunit F [Rickettsia conorii str. Malish 7] gi|20139048|sp|Q92JB2|NUOF_RICCN RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|15619200|gb|AAL02693.1| NADH dehydrogenase I chain F [Rickettsia conorii str. Malish 7] Length = 421 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 291/417 (69%), Positives = 334/417 (80%), Gaps = 3/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARI 415 >gi|34580891|ref|ZP_00142371.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246] gi|28262276|gb|EAA25780.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246] Length = 421 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 291/417 (69%), Positives = 334/417 (80%), Gaps = 3/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNVQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARI 415 >gi|229586353|ref|YP_002844854.1| NADH dehydrogenase I subunit F [Rickettsia africae ESF-5] gi|228021403|gb|ACP53111.1| NADH dehydrogenase I chain F [Rickettsia africae ESF-5] Length = 421 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 291/417 (69%), Positives = 334/417 (80%), Gaps = 3/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EQSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARI 415 >gi|307105658|gb|EFN53906.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlorella variabilis] Length = 444 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 276/409 (67%), Positives = 330/409 (80%), Gaps = 1/409 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG + + RG W I+ KG DW+++++K SGLRGRGGAGF Sbjct: 8 LADKDRIFTNIYGRHDPFIKGAEKRGDWYRTKDIVSKGSDWVVDQMKKSGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA + A Sbjct: 68 SGLKWSFMPKVSDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVGMRARAG 127 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF+ ER+++ A+DE YA G LG N+ GYD D+ VH GAGAYICGEETAL+E Sbjct: 128 YIYIRGEFVEERKAVMRAIDEAYAKGYLGRNACGSGYDFDLNVHWGAGAYICGEETALIE 187 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++GFGR+NN GTK Sbjct: 188 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNHGTK 247 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN P TVEE MSI+ ELIE+H GG+RGGWDNLLA+IPGGSSVP LP Q Sbjct: 248 LFAISGHVNRPVTVEEEMSISLKELIERHAGGVRGGWDNLLAIIPGGSSVPMLPKAQCED 307 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAV+VMD+STD I+AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 308 VLMDFDALKERQSGLGTAAVMVMDKSTDPIEAIARLSYFYKHESCGQCTPCREGTGWLYD 367 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR Sbjct: 368 IMTRMKKGDARVEEIDMLWELTKQIEGHTICALGDAAAWPVQGLIRHFR 416 >gi|219885535|gb|ACL53142.1| unknown [Zea mays] Length = 504 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 279/408 (68%), Positives = 327/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L ++ RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMR +PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRQDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|283046718|ref|NP_001164305.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Tribolium castaneum] gi|270008216|gb|EFA04664.1| hypothetical protein TcasGA2_TC014119 [Tribolium castaneum] Length = 478 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 275/423 (65%), Positives = 333/423 (78%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L ++ RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LSDEDRIFTNLYGKHDWRLKGALKRGDWYKTKEILLKGSDWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAKAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GLLG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQVAIAEAYQAGLLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 230 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGTWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSITF EL+E+H GGI GGWDNLLA+IPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSITFKELVERHAGGIIGGWDNLLAIIPGGSSTPLIPKSVCED 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG WM + Sbjct: 350 VIMDFDGLVAAQTSLGTAAIIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++H Sbjct: 410 IMYRFVDGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRKFH 469 Query: 421 RCN 423 N Sbjct: 470 EQN 472 >gi|195473699|ref|XP_002089130.1| GE18950 [Drosophila yakuba] gi|194175231|gb|EDW88842.1| GE18950 [Drosophila yakuba] Length = 474 Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W++GFGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469 Query: 421 R 421 + Sbjct: 470 K 470 >gi|195030314|ref|XP_001988013.1| GH10936 [Drosophila grimshawi] gi|193904013|gb|EDW02880.1| GH10936 [Drosophila grimshawi] Length = 476 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 281/420 (66%), Positives = 330/420 (78%), Gaps = 2/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINEVK SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEVKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G ++ GYD D+ +H GAGAYICGEETAL+E Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYDFDVFMHRGAGAYICGEETALIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPKKVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLIHFYKHESCGQCTPCREGIGWMNK 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q H Sbjct: 409 IMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRM-QLH 467 >gi|118367869|ref|XP_001017144.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena thermophila] gi|89298911|gb|EAR96899.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena thermophila SB210] Length = 474 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 280/421 (66%), Positives = 333/421 (79%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY + ++ RG W +IL G +WII+E+K SGLRGRGGAGF Sbjct: 35 LKDQDRIFTNLYRDGDPFVKGALKRGDWHQTKEILSNGPEWIIDEIKKSGLRGRGGAGFL 94 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D RP YLV+N+DESEPGTCKDR+I+R++PH L+EG ++ F++ A Sbjct: 95 SGLKYSFMPKVNPDGRPSYLVINSDESEPGTCKDREILRNDPHKLVEGALVVGFSMRARA 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE YA G +G N+ GYD D+ +H GAGAYICGEET L+ Sbjct: 155 AYIYIRGEFWVEANILQQAIDEAYAKGFIGKNACGSGYDFDVYIHRGAGAYICGEETGLI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK GQPR+KPPFPAN GLYGCPTTV NVE++AV PTI+RRGASW++ FGR NN GT Sbjct: 215 ESIEGKAGQPRVKPPFPANAGLYGCPTTVTNVETVAVCPTIMRRGASWFASFGRPNNAGT 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PCTVEE MSI EL+EKHCGG+RGGWDNLLAVIPGGSSVP +P Sbjct: 275 KLYCISGHVNNPCTVEEEMSIPLRELLEKHCGGVRGGWDNLLAVIPGGSSVPMMPKNVCD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK +GSGLGTAAVIVMD+STD I AI RLS FYKHESCGQCTPCREGTGW++ Sbjct: 335 DVLMDFDALKAVGSGLGTAAVIVMDKSTDPIDAILRLSKFYKHESCGQCTPCREGTGWIV 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMERL+ G A EID+L +V++ IE TICALGDAAAWP+QGLIKNFR IE+RID Y Sbjct: 395 DVMERLLVGNADYAEIDMLQQVTQQIEMHTICALGDAAAWPVQGLIKNFREEIEDRIDSY 454 Query: 420 H 420 H Sbjct: 455 H 455 >gi|157803300|ref|YP_001491849.1| NADH dehydrogenase I subunit F [Rickettsia canadensis str. McKiel] gi|166918574|sp|A8EXI1|NUOF_RICCK RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|157784563|gb|ABV73064.1| NADH dehydrogenase I chain F [Rickettsia canadensis str. McKiel] Length = 420 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 288/417 (69%), Positives = 334/417 (80%), Gaps = 2/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IF NL+G Q L S RG WDN +L+KGRD+II EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFIIEEVKQSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHCGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA+ GLYGCPTT+NNVESIAVVPTILRRGA+W++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVPTILRRGANWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I ELIEK+ GG++GGW+NL A+IPGGSSVP +P Sbjct: 240 KVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGGWNNLKAIIPGGSSVPLIPKSICE 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVM++STDI+ AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TVDMDFDSLRTAGSGLGTGGIIVMNQSTDIVYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IEERI Sbjct: 360 RVMMRLVKGNAKKSEIDQLLSVTKAIEGHTICALGDAAAWPIQGLIRHFRDEIEERI 416 >gi|195385529|ref|XP_002051457.1| GJ12140 [Drosophila virilis] gi|194147914|gb|EDW63612.1| GJ12140 [Drosophila virilis] Length = 476 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 277/419 (66%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GY+ D+ +H GAGAYICGEETAL+E Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 289 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 409 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 467 >gi|190895712|gb|ACE96369.1| esterase/lipase/thioesterase [Populus tremula] gi|190895718|gb|ACE96372.1| esterase/lipase/thioesterase [Populus tremula] gi|190895748|gb|ACE96387.1| esterase/lipase/thioesterase [Populus tremula] gi|190895754|gb|ACE96390.1| esterase/lipase/thioesterase [Populus tremula] gi|190895758|gb|ACE96392.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 279/405 (68%), Positives = 325/405 (80%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK+ RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408 >gi|195115497|ref|XP_002002293.1| GI13499 [Drosophila mojavensis] gi|193912868|gb|EDW11735.1| GI13499 [Drosophila mojavensis] Length = 476 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 277/419 (66%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GY+ D+ +H GAGAYICGEETAL+E Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 409 IMTRFVKGDAQPSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 467 >gi|194860015|ref|XP_001969499.1| GG10139 [Drosophila erecta] gi|190661366|gb|EDV58558.1| GG10139 [Drosophila erecta] Length = 474 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGVWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469 Query: 421 R 421 + Sbjct: 470 K 470 >gi|19920794|ref|NP_608987.1| CG9140 [Drosophila melanogaster] gi|7297065|gb|AAF52334.1| CG9140 [Drosophila melanogaster] gi|15291595|gb|AAK93066.1| GM14163p [Drosophila melanogaster] gi|220945776|gb|ACL85431.1| CG9140-PA [synthetic construct] gi|220955472|gb|ACL90279.1| CG9140-PA [synthetic construct] Length = 474 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469 Query: 421 R 421 + Sbjct: 470 K 470 >gi|296218952|ref|XP_002755638.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Callithrix jacchus] Length = 464 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|281203657|gb|EFA77854.1| ubiquinone oxidoreductase [Polysphondylium pallidum PN500] Length = 481 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 279/420 (66%), Positives = 331/420 (78%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L + RG W I+ KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 54 LKDQDRIFTNLYGEHDVYLKGAEKRGDWYRTKDIIGKGKDWILKEMMASGLRGRGGAGFP 113 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A A Sbjct: 114 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMRACAA 173 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + L+ A+DE Y +G LG+N+ GY D+ VH GAGAYICGEETAL+E Sbjct: 174 YIYIRGEFHHEAKVLEKAIDEAYKAGYLGANACGTGYHFDVYVHRGAGAYICGEETALIE 233 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG SW++GFGR N GTK Sbjct: 234 SLEGKQGKPRLKPPFPAMSGLYGCPTTVTNVETVAVAPTILRRGGSWFAGFGRPKNSGTK 293 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNLL VIPGGSSVP +P Sbjct: 294 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGVIPGGSSVPVIPKDICDD 353 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+ + SGLGTAAVIVMD+STDII AI RLS FYKHESCGQC+PCREGTGW+ Sbjct: 354 VLMDFDDLRRVRSGLGTAAVIVMDKSTDIIAAIARLSKFYKHESCGQCSPCREGTGWLWD 413 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + ERLV G A+ E+D+L E+S+ IEG TICALGDAAAWP+QGLI+++RP IE+RI + Sbjct: 414 ITERLVTGDAKLDEVDMLEEISRQIEGHTICALGDAAAWPVQGLIRHYRPEIEQRIQDFQ 473 >gi|296218954|ref|XP_002755639.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 2 [Callithrix jacchus] Length = 455 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 26 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 86 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 145 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 386 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 444 >gi|190895700|gb|ACE96363.1| esterase/lipase/thioesterase [Populus tremula] gi|190895702|gb|ACE96364.1| esterase/lipase/thioesterase [Populus tremula] gi|190895708|gb|ACE96367.1| esterase/lipase/thioesterase [Populus tremula] gi|190895710|gb|ACE96368.1| esterase/lipase/thioesterase [Populus tremula] gi|190895714|gb|ACE96370.1| esterase/lipase/thioesterase [Populus tremula] gi|190895716|gb|ACE96371.1| esterase/lipase/thioesterase [Populus tremula] gi|190895720|gb|ACE96373.1| esterase/lipase/thioesterase [Populus tremula] gi|190895722|gb|ACE96374.1| esterase/lipase/thioesterase [Populus tremula] gi|190895724|gb|ACE96375.1| esterase/lipase/thioesterase [Populus tremula] gi|190895726|gb|ACE96376.1| esterase/lipase/thioesterase [Populus tremula] gi|190895728|gb|ACE96377.1| esterase/lipase/thioesterase [Populus tremula] gi|190895730|gb|ACE96378.1| esterase/lipase/thioesterase [Populus tremula] gi|190895732|gb|ACE96379.1| esterase/lipase/thioesterase [Populus tremula] gi|190895734|gb|ACE96380.1| esterase/lipase/thioesterase [Populus tremula] gi|190895736|gb|ACE96381.1| esterase/lipase/thioesterase [Populus tremula] gi|190895738|gb|ACE96382.1| esterase/lipase/thioesterase [Populus tremula] gi|190895740|gb|ACE96383.1| esterase/lipase/thioesterase [Populus tremula] gi|190895742|gb|ACE96384.1| esterase/lipase/thioesterase [Populus tremula] gi|190895744|gb|ACE96385.1| esterase/lipase/thioesterase [Populus tremula] gi|190895746|gb|ACE96386.1| esterase/lipase/thioesterase [Populus tremula] gi|190895752|gb|ACE96389.1| esterase/lipase/thioesterase [Populus tremula] gi|190895756|gb|ACE96391.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 279/405 (68%), Positives = 324/405 (80%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408 >gi|115502495|sp|Q0MQI4|NDUV1_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|111661795|gb|ABH12159.1| mitochondrial complex I subunit NDUFV1 [Pongo pygmaeus] Length = 464 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVNYPCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNYPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|326429055|gb|EGD74625.1| NADH dehydrogenase flavoprotein 1 [Salpingoeca sp. ATCC 50818] Length = 463 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 279/421 (66%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L +M RG W I+ KG D+I+ EVK SGLRGRGGAGF Sbjct: 31 LQDSDRIFQNLYGKHDWGLKGAMKRGTWYKTKDIVLKGDDFILEEVKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM DRP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A A+ A A Sbjct: 91 SGLKWSFMKGATDDRPKYLVVNADEGEPGTCKDREIMRHDPHMLIEGCLVAGRAMNARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF +E +LQ A++E Y +GL+G N+ GYD D+ + GAGAYICGEETAL+E Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDAGLIGKNACGSGYDFDVYLFRGAGAYICGEETALIE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPANVGL+GCPTTV NVE++AV PTILRRG W++GFGR+ N GTK Sbjct: 211 SLEGKTGKPRLKPPFPANVGLFGCPTTVANVETVAVAPTILRRGGDWFAGFGRKRNEGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PC VEESMSIT ELI+KHCGG+ GGWDNLL VIPGGSSVP LP Sbjct: 271 LFAISGNVNNPCVVEESMSITLRELIDKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVMD+S DII I RLS FY HESCGQCTPCREGT W+ + Sbjct: 331 VLMDFDALAAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLAK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+ Sbjct: 391 VMHRFVRGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450 Query: 421 R 421 + Sbjct: 451 K 451 >gi|195434685|ref|XP_002065333.1| GK15392 [Drosophila willistoni] gi|194161418|gb|EDW76319.1| GK15392 [Drosophila willistoni] Length = 478 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 277/420 (65%), Positives = 328/420 (78%), Gaps = 2/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGPWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVKNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKSVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q H Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRM-QLH 468 >gi|198415470|ref|XP_002131638.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Ciona intestinalis] Length = 457 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 274/421 (65%), Positives = 327/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +M RG W +I+ KG DW++ ++K SGLRGRGGAGF Sbjct: 30 LKDQDRIFTNLYGRHDWKLKGAMQRGDWYKTKEIILKGNDWVLQQIKESGLRGRGGAGFP 89 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM + RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A A+GA A Sbjct: 90 TGMKWSFMNRPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGVAMGARAA 149 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +L A+ E Y +GL+G +S GYD DI VH GAGAYICGEET+L+E Sbjct: 150 YIYIRGEFYNEASNLNVAIKEAYDAGLIGKDSCGSGYDFDIFVHRGAGAYICGEETSLIE 209 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VG++GCPTTV NVE++AV PTI RR W++GFGRE N GTK Sbjct: 210 SLEGKQGKPRLKPPFPAEVGVFGCPTTVANVETVAVAPTICRRTPQWFAGFGRERNTGTK 269 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE+MSI ELIE+HCGG+RGGWDNLL VIPGGSS P LP Sbjct: 270 LFNISGHVNHPCTVEETMSIPMKELIERHCGGVRGGWDNLLCVIPGGSSTPLLPKNICDD 329 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L E+ SGLGTAA+IVMD+STD+I+AI RL FYKHESCGQCTPCREG WM Sbjct: 330 VLMDFDALVEVTSGLGTAALIVMDKSTDVIRAIARLMEFYKHESCGQCTPCREGVTWMND 389 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++R +G A EID L+E+SK +EG TICALGD AAWP QGLI++ RP+IEER+ YH Sbjct: 390 TLQRFTRGDADPEEIDSLWEISKQVEGHTICALGDGAAWPAQGLIRHMRPVIEERMKAYH 449 Query: 421 R 421 + Sbjct: 450 Q 450 >gi|158299072|ref|XP_319184.4| AGAP010039-PA [Anopheles gambiae str. PEST] gi|157014192|gb|EAA13847.5| AGAP010039-PA [Anopheles gambiae str. PEST] Length = 472 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 278/421 (66%), Positives = 331/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 45 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEMKVSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 105 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 225 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGTWFASFGRTRNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GGIRGGWDNLL +IPGGSS P +P Sbjct: 285 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG WM + Sbjct: 345 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ QY Sbjct: 405 IMHRFVTGNARPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIESRMKQYE 464 Query: 421 R 421 + Sbjct: 465 Q 465 >gi|190895704|gb|ACE96365.1| esterase/lipase/thioesterase [Populus tremula] gi|190895706|gb|ACE96366.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLE K+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEVKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408 >gi|66805535|ref|XP_636489.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4] gi|74852419|sp|Q54I90|NDUV1_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|60464845|gb|EAL62961.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4] Length = 479 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +++RG W I++KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 51 LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110 Query: 62 TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A Sbjct: 111 SGLKWSFMPKTTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E + L+ A+DE Y +GL+G N+ GY D+ VH GAGAYICGEETAL+ Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++ FGR N GT Sbjct: 231 ESIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNL VIPGGSSVP LP Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L++ SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +RLV G A+ EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470 Query: 420 H 420 Sbjct: 471 Q 471 >gi|193587168|ref|XP_001946240.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Acyrthosiphon pisum] Length = 482 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 279/423 (65%), Positives = 329/423 (77%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L ++ RG W +IL KG D+IINEVK SGLRGRGGAGF Sbjct: 53 LSDSDRIFTNLYGRHDWQLKGALKRGDWYKTKEILIKGTDYIINEVKTSGLRGRGGAGFP 112 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A A+GA A Sbjct: 113 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGACAA 172 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ VH GAGAYICGEETAL+E Sbjct: 173 YIYIRGEFYNEASNLQQAICEAYQAGLIGKNACNSGYDFDVFVHRGAGAYICGEETALIE 232 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W+ G GR N GTK Sbjct: 233 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFLGLGRPRNSGTK 292 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GGI GGWDNLLAVIPGGSS P +P Sbjct: 293 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGIIGGWDNLLAVIPGGSSTPLIPKHVCET 352 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DGL + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG WM + Sbjct: 353 AIMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 412 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R+ +Y Sbjct: 413 IMYRFVDGQAQSSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELECRMKKYQ 472 Query: 421 RCN 423 N Sbjct: 473 EQN 475 >gi|115392085|ref|NP_001065293.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Pan troglodytes] gi|115502494|sp|Q0MQI6|NDUV1_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|111661791|gb|ABH12157.1| mitochondrial complex I subunit NDUFV1 [Pan troglodytes] Length = 464 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|73982785|ref|XP_864381.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 7 [Canis familiaris] Length = 457 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 275/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 28 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 88 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 147 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 267 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 446 >gi|311247118|ref|XP_003122486.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Sus scrofa] Length = 464 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+ Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 453 >gi|311247120|ref|XP_003122487.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 2 [Sus scrofa] Length = 455 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 26 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 85 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 86 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 145 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 265 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+ Sbjct: 386 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 444 >gi|328871524|gb|EGG19894.1| ubiquinone oxidoreductase [Dictyostelium fasciculatum] Length = 473 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 277/425 (65%), Positives = 330/425 (77%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +++RG W ++ KG+DWII E+ ASGLRGRGGAGF Sbjct: 46 LKDKDRIFTNLYGEHDVYLKGAIARGDWYRTKDLIGKGKDWIIKEMMASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A A Sbjct: 106 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGFAMRACAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + ++ A+ E Y +G LG N+ GY D VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFHLEAKVMEQAIAEAYKAGYLGENACGTGYKFDCYVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++GFGR N GTK Sbjct: 226 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNSGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNLL +IPGGSSVP LP Sbjct: 286 LFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGIIPGGSSVPVLPKDICNE 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+ + SGLGTAAV VMD+STDI+ AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 346 VLMDFDDLRRVRSGLGTAAVTVMDKSTDIVGAIARLSKFYKHESCGQCTPCREGTGWMWD 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV G A+ EID+L E+++ +EG TICALGDAAAWPIQGL+++FRP +E RI + Sbjct: 406 VMERLVTGDAKLDEIDMLEEITRQVEGHTICALGDAAAWPIQGLLRHFRPEVEARIHSFQ 465 Query: 421 RCNFQ 425 Q Sbjct: 466 ATKKQ 470 >gi|119595060|gb|EAW74654.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_c [Homo sapiens] Length = 457 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 28 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 88 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 147 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 267 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 446 >gi|20149568|ref|NP_009034.2| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial isoform 1 precursor [Homo sapiens] gi|20455501|sp|P49821|NDUV1_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH dehydrogenase flavoprotein 1; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|3095113|gb|AAC39722.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens] gi|3136152|gb|AAC39750.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens] gi|5138912|gb|AAD40373.1| 51kDa subunit of NADH dehydrogenase [Homo sapiens] gi|15990511|gb|AAH15645.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Homo sapiens] gi|48145595|emb|CAG33020.1| NDUFV1 [Homo sapiens] gi|119595061|gb|EAW74655.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_d [Homo sapiens] gi|119595062|gb|EAW74656.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_d [Homo sapiens] gi|123993121|gb|ABM84162.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic construct] gi|124000113|gb|ABM87565.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic construct] gi|307684728|dbj|BAJ20404.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic construct] gi|311347578|gb|ADP90734.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347580|gb|ADP90735.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347582|gb|ADP90736.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347584|gb|ADP90737.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347586|gb|ADP90738.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347588|gb|ADP90739.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347590|gb|ADP90740.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347592|gb|ADP90741.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347594|gb|ADP90742.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347596|gb|ADP90743.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347598|gb|ADP90744.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347600|gb|ADP90745.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347602|gb|ADP90746.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347604|gb|ADP90747.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347606|gb|ADP90748.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347608|gb|ADP90749.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347610|gb|ADP90750.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347612|gb|ADP90751.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347614|gb|ADP90752.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347616|gb|ADP90753.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347618|gb|ADP90754.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347620|gb|ADP90755.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347622|gb|ADP90756.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347624|gb|ADP90757.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347626|gb|ADP90758.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347628|gb|ADP90759.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347630|gb|ADP90760.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347632|gb|ADP90761.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347634|gb|ADP90762.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347636|gb|ADP90763.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347638|gb|ADP90764.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347640|gb|ADP90765.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347642|gb|ADP90766.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347644|gb|ADP90767.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347646|gb|ADP90768.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347648|gb|ADP90769.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347650|gb|ADP90770.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347652|gb|ADP90771.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347654|gb|ADP90772.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347656|gb|ADP90773.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] Length = 464 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|254569928|ref|XP_002492074.1| hypothetical protein [Pichia pastoris GS115] gi|238031871|emb|CAY69794.1| hypothetical protein PAS_chr2-2_0462 [Pichia pastoris GS115] gi|308152238|emb|CBI83538.1| NUBM (51 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] gi|328351436|emb|CCA37835.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Pichia pastoris CBS 7435] Length = 473 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 271/419 (64%), Positives = 332/419 (79%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+Y G+ L S RG W +I+ KG +W+INE+KASGLRGRGGAGF Sbjct: 19 LKDSDRIFQNVYSKYGEDLKSSQQRGDWYKTKEIILKGHEWLINELKASGLRGRGGAGFP 78 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMP + P YLVVNADE EPGTCKDR+I+R EPH L+EGC++A A+ A A Sbjct: 79 SGLKYSFMPPNPNREPQYLVVNADEGEPGTCKDREIIRKEPHKLVEGCLLAGRAMNATAA 138 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E Y +GLLG N+ GYD D+ +H G GAYICGEETAL+E Sbjct: 139 YIYIRGEFYNEAVALQTAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYICGEETALIE 198 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA VGL+G PTTV NVE++AV PTI RR +W++ FGR+ N+GTK Sbjct: 199 SIEGKAGKPRLKPPFPAGVGLFGRPTTVTNVETVAVTPTIFRRSGAWFASFGRDRNQGTK 258 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEESMSI EL+EKHCGGI+GGWDNLL V+PGGSSVP +P Sbjct: 259 LFCISGHVNEPCTVEESMSIPLKELLEKHCGGIKGGWDNLLGVVPGGSSVPIMPKHVCED 318 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK++GSGLGTAAVIV+++ TDII+AI R S FYKHESCGQCTPCREGT ++ R Sbjct: 319 VLMDFDALKDVGSGLGTAAVIVLNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTYLQR 378 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M+R V G A+++EIDL+YE+SK IEG TICALGDAAAWP+QGLIK+FRP + ERI QY Sbjct: 379 MMDRFVTGQAKEKEIDLIYELSKEIEGHTICALGDAAAWPVQGLIKSFRPEMVERIKQY 437 >gi|260656005|ref|NP_001159574.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial isoform 2 precursor [Homo sapiens] gi|14198176|gb|AAH08146.1| NDUFV1 protein [Homo sapiens] gi|119595058|gb|EAW74652.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_a [Homo sapiens] Length = 455 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 26 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 86 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 145 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 386 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 444 >gi|281353395|gb|EFB28979.1| hypothetical protein PANDA_010233 [Ailuropoda melanoleuca] Length = 440 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 11 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 71 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 130 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 131 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 190 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 191 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 250 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 251 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 310 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 311 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 370 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 371 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 429 >gi|194218547|ref|XP_001917609.1| PREDICTED: similar to NADH dehydrogenase [Equus caballus] Length = 464 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQSGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMHRF 453 >gi|115502493|sp|Q0MQI5|NDUV1_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|111661793|gb|ABH12158.1| mitochondrial complex I subunit NDUFV1 [Gorilla gorilla] Length = 464 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+SGFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFSGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGW+NLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWENLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|160420036|dbj|BAF93481.1| NADH dehydrogenase flavoprotein 1 [Macaca fascicularis] Length = 464 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|328771741|gb|EGF81780.1| hypothetical protein BATDEDRAFT_31463 [Batrachochytrium dendrobatidis JAM81] Length = 462 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 275/422 (65%), Positives = 332/422 (78%), Gaps = 3/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L + RG W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 39 LSDNDRIFTNLYGRHDFKLEGAKKRGDWYKTKEIILKGHDWIISEMKTSGLRGRGGAGFP 98 Query: 62 TGMKWSFM--PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 +G+KWSFM P RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++A A+ A Sbjct: 99 SGLKWSFMNKPGGPDGRPRYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLLAGRAMNAT 158 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+RGEF E +LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEETAL Sbjct: 159 ACYIYIRGEFYNEASNLQIAINEAYKAGLIGKNACGSGYDFDIYIHRGGGAYICGEETAL 218 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ES+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTILRRG SW++GFGRE N G Sbjct: 219 IESIEGKAGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTILRRGGSWFAGFGRERNSG 278 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLL +IPGGSSVP LP Sbjct: 279 TKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLGIIPGGSSVPVLPRKMC 338 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A+MD+D L++M SGLGTAAVIVMD+STDI+ AI RLS FY+HESCGQCTPCREGT W+ Sbjct: 339 EDALMDFDSLRDMQSGLGTAAVIVMDKSTDIVHAISRLSAFYQHESCGQCTPCREGTTWL 398 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R KG A+ EID++ E+S+ IEG TICALGDAAAWP+QGLI++FRP +E++I Q Sbjct: 399 SNMMRRFEKGNAKVAEIDMIEELSRQIEGHTICALGDAAAWPVQGLIRHFRPEVEKKIMQ 458 Query: 419 YH 420 + Sbjct: 459 FQ 460 >gi|190895750|gb|ACE96388.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAA P+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAARPVQGLI 408 >gi|327260438|ref|XP_003215041.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Anolis carolinensis] Length = 467 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 282/425 (66%), Positives = 334/425 (78%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 39 LKDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILNEIKTSGLRGRGGAGFP 98 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 99 TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 158 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 159 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVARGAGAYICGEETALIE 218 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW+ GFGRE N GTK Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFVGFGRERNSGTK 278 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG++GGWDNLLAVIPGGSS P +P Sbjct: 279 LFNISGHVNTPCTVEEEMSIPLRDLIERHAGGVKGGWDNLLAVIPGGSSTPLIPKSVCET 338 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + +GLGTAAVIVMD+STD+++AI RL FYKHESCGQCTPCREG WM + Sbjct: 339 VLMDFDGLIQAQTGLGTAAVIVMDKSTDLVRAIARLIEFYKHESCGQCTPCREGVDWMNK 398 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R VKG AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ QYH Sbjct: 399 VMWRFVKGNAQVAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRQYH 458 Query: 421 RCNFQ 425 Q Sbjct: 459 ESKAQ 463 >gi|167646790|ref|YP_001684453.1| NADH dehydrogenase subunit I F [Caulobacter sp. K31] gi|167349220|gb|ABZ71955.1| NADH-quinone oxidoreductase, F subunit [Caulobacter sp. K31] Length = 439 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 292/420 (69%), Positives = 340/420 (80%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGLQ L + RG W+ IL+ GRDWII+ +K SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH Sbjct: 64 GTGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++RERE L+AA+ + Y + L+G N+ G+D D+ VHHGAGAYICGEETALL Sbjct: 124 ACYIYIRGEYVREREVLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYG PTTVNNVESIAV TILRRGA+W++GFGR NN GT Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNTGT 243 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLMEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+ G A +EID L +V+ +EG TICALGDAAAWPIQGL ++FR +E+RI Y Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEDRIASY 423 >gi|90083182|dbj|BAE90673.1| unnamed protein product [Macaca fascicularis] Length = 464 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPAQGLIRHFRPELEERMQRF 453 >gi|170039879|ref|XP_001847747.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex quinquefasciatus] gi|167863468|gb|EDS26851.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex quinquefasciatus] Length = 474 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 273/421 (64%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG +WIINE KASGLRGRGGAGF Sbjct: 48 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTEWIINETKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA +GA A Sbjct: 108 TGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRCMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFASFGRTRNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL +IPGGSS P +P Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLGIIPGGSSTPIIPKSVCDD 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM + Sbjct: 348 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGIAWMHK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ ++ Sbjct: 408 MMHRFVDGNARPDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKHE 467 Query: 421 R 421 + Sbjct: 468 Q 468 >gi|62897683|dbj|BAD96781.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa variant [Homo sapiens] Length = 464 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +G +G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGPIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|62510804|sp|Q8HXQ9|NDUV1_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|23574759|dbj|BAC20599.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Macaca fascicularis] Length = 464 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 273/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYK+ESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|255947866|ref|XP_002564700.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591717|emb|CAP97960.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255] Length = 495 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 275/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L SM G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 46 LKDQDRIFTNLYGHHGADLKSSMKYGDWYRTKDIISKGDDWLISEIKASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 166 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGSGYDFDVYIHRGMGAYICGEETS 225 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI+ ELIEKHCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 286 GTKLFCISGHVNNPVTVEEEMSISLRELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKTV 345 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 346 ADNQLMDFDALKDSQTGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+RL G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 406 TMQMMQRLETGNAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465 Query: 418 QYHR 421 QY + Sbjct: 466 QYEK 469 >gi|1408306|gb|AAB03672.1| ndufv1 [Dictyostelium discoideum] Length = 479 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 274/421 (65%), Positives = 330/421 (78%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +++RG W I++KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 51 LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110 Query: 62 TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMP+ S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A Sbjct: 111 SGLKWSFMPETTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E + L+ A+DE Y +GL+G N+ GY D+ VH GAGAYICGEETAL+ Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++ FGR N GT Sbjct: 231 GSIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNL VIPGGSSVP LP Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L++ SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +RLV G A+ EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470 Query: 420 H 420 Sbjct: 471 Q 471 >gi|298711911|emb|CBJ48598.1| NUOF homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus siliculosus] Length = 511 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 271/416 (65%), Positives = 331/416 (79%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG Q + D++ RG W +I+ G DWI+ E+K SGLRGRGGAGF Sbjct: 54 LKDQDRIFTNLYGEQDWRVGDALKRGDWHQTKEIMWMGPDWIVQEMKDSGLRGRGGAGFP 113 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A +A+ A A Sbjct: 114 SGLKWSFMPKNTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAA 173 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E + A+ E Y G LG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 174 YIYIRGEYFNEAVVMDEAIHEAYQKGFLGKNACGSGYDFDVYLHRGAGAYICGEETALIE 233 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G+PRLKPPFPANVG++GCPTTV NVE++AV PTILRRGASW++ FGR+NN GTK Sbjct: 234 SLEGRQGKPRLKPPFPANVGVFGCPTTVTNVETVAVAPTILRRGASWFASFGRKNNHGTK 293 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN P VEE MSIT EL++KHCGG+RGGWDNL AVIPGGSSVP L Sbjct: 294 LFAISGHVNNPIVVEEEMSITLRELLDKHCGGVRGGWDNLQAVIPGGSSVPVLDINDCAD 353 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ GSGLGTAAV VMD+S D+I AI RL+ FYKHESCGQCTPCREGTGW+ + Sbjct: 354 VMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCREGTGWLEQ 413 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++ KG A REI +L E+S++IEG TICALGDAAAWP+QGLI+ F+P+IEERI Sbjct: 414 MLVKMEKGEADTREIPMLEEISRSIEGHTICALGDAAAWPVQGLIRRFQPVIEERI 469 >gi|19526814|ref|NP_598427.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Mus musculus] gi|47117274|sp|Q91YT0|NDUV1_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|15928709|gb|AAH14818.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus] gi|26344485|dbj|BAC35893.1| unnamed protein product [Mus musculus] gi|27469887|gb|AAH41682.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus] gi|148701043|gb|EDL32990.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b [Mus musculus] Length = 464 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 273/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ YD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++ Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRF 453 >gi|195146494|ref|XP_002014219.1| GL19080 [Drosophila persimilis] gi|194106172|gb|EDW28215.1| GL19080 [Drosophila persimilis] Length = 477 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG +WIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 468 >gi|167523547|ref|XP_001746110.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775381|gb|EDQ89005.1| predicted protein [Monosiga brevicollis MX1] Length = 463 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/421 (65%), Positives = 326/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L ++ RG W I+E G D+I++EVK SGLRGRGGAGF Sbjct: 31 LADDDRVFQNLYGRHDWGLKGALKRGTWYKTKNIVEAGSDFILDEVKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A A+GA A Sbjct: 91 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLLEGCLVAGRAMGAQAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF +E +LQ A++E Y GL+G N+ GYD DI + GAGAYICGEETAL+E Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDKGLIGKNACGSGYDFDIFLFRGAGAYICGEETALIE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG W++ FGRE N GTK Sbjct: 211 SIEGKTGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGDWFASFGRERNSGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PC VEE MSI+ EL+EKHCGG+ GGWDNLL VIPGGSSVP LP Sbjct: 271 LFAISGNVNKPCVVEEEMSISLRELLEKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVMD+S DII I RLS FY HESCGQCTPCREGT W+ + Sbjct: 331 VMMDFDALVAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLSK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+ Sbjct: 391 VMRRFVSGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450 Query: 421 R 421 + Sbjct: 451 Q 451 >gi|125986851|ref|XP_001357188.1| GA21571 [Drosophila pseudoobscura pseudoobscura] gi|54645518|gb|EAL34256.1| GA21571 [Drosophila pseudoobscura pseudoobscura] Length = 477 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG +WIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKKVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 468 >gi|145258049|ref|XP_001401928.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS 513.88] gi|134074533|emb|CAK38826.1| mitochondrial proton-pumping NADH:ubiquinone reductase nuo51-Aspergillus niger Length = 496 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 273/424 (64%), Positives = 335/424 (79%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 46 LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 166 NAAYIYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI+ ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 406 TMQMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465 Query: 418 QYHR 421 +Y + Sbjct: 466 EYSK 469 >gi|70993752|ref|XP_751723.1| NADH-ubiquinone oxidoreductase, subunit F [Aspergillus fumigatus Af293] gi|66849357|gb|EAL89685.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus fumigatus Af293] gi|159125355|gb|EDP50472.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus fumigatus A1163] Length = 496 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 275/424 (64%), Positives = 331/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LRDQDRIFTNLYGHHGTDLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 167 TAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDNQIMDFDSLKDSQSGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QYHR 421 +Y R Sbjct: 467 EYER 470 >gi|308510360|ref|XP_003117363.1| CRE-NUO-1 protein [Caenorhabditis remanei] gi|308242277|gb|EFO86229.1| CRE-NUO-1 protein [Caenorhabditis remanei] Length = 479 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M+RG W +I+ KG DWI+ E+K SGLRGRGGAGF Sbjct: 46 LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I A+GA A Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E Y +G LG + GY+ D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ + Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465 Query: 421 R 421 + Sbjct: 466 K 466 >gi|51230625|ref|NP_001003747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Danio rerio] gi|50925098|gb|AAH78648.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Danio rerio] gi|94733524|emb|CAK04074.1| novel protein (zgc:86620) [Danio rerio] Length = 492 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 334/421 (79%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL+KG DWI+NE+K SGLRGRGGAGF Sbjct: 66 LADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFP 125 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A A+GA A Sbjct: 126 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAA 185 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E YA+GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 186 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEETALIE 245 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 246 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 305 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 306 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDT 365 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IVMD+STD+I+AI RL FYKHESCGQCTPCREG WM + Sbjct: 366 VLMDFDALIQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 425 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG A+ EID+++E+SK IEG TICALGD AAWP+QGLI++FRPL+E RI + Sbjct: 426 MMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLMESRIADFQ 485 Query: 421 R 421 + Sbjct: 486 Q 486 >gi|121707889|ref|XP_001271969.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus clavatus NRRL 1] gi|119400117|gb|EAW10543.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus clavatus NRRL 1] Length = 496 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 273/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVNKGDDWLISEIKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKGWDKDPRPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++ FG E N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFNSFGAERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKAV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDDQIMDFDSLKDSQSGLGTAAVIVMDKSTDIIRAISRLSKFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TAQIMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QYHR 421 +Y + Sbjct: 467 EYEQ 470 >gi|169868608|ref|XP_001840875.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea okayama7#130] gi|116498033|gb|EAU80928.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea okayama7#130] Length = 516 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 268/426 (62%), Positives = 333/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + +MSRG W +IL KG WII +K SGLRGRGGAGF Sbjct: 51 LKDQDRIFTNVYSRHDHGIKGAMSRGDWHKTKEILLKGDAWIIQTIKDSGLRGRGGAGFP 110 Query: 62 TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A A+ A Sbjct: 111 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 170 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A++E YA+G +G N+ GYD D+ VH GAGAYICGEETA Sbjct: 171 NAAYIYIRGEFYQEASHVQQAINEAYAAGFIGKNACGSGYDFDVYVHRGAGAYICGEETA 230 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGR+ N Sbjct: 231 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRQRNE 290 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PC VEE MSI +LIEKHCGG+RGGWDNLL ++PGGSSVP +P Sbjct: 291 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVRGGWDNLLGIVPGGSSVPIIPKDV 350 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGT AVIVMD+STD+++AI R + FYKHESCGQCTPCREGT W Sbjct: 351 CAEVLMDFDSLKDAQTGLGTGAVIVMDKSTDVVRAISRFADFYKHESCGQCTPCREGTTW 410 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++M+R+V+G A +REID+L E++K IEGRTICALGDAAAWPIQGL+++FRP +E RI Sbjct: 411 MKKMMDRMVEGRAHQREIDMLLELTKQIEGRTICALGDAAAWPIQGLMRHFRPEVERRIA 470 Query: 418 QYHRCN 423 ++ N Sbjct: 471 EFQAAN 476 >gi|290988111|ref|XP_002676765.1| predicted protein [Naegleria gruberi] gi|284090369|gb|EFC44021.1| predicted protein [Naegleria gruberi] Length = 480 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 268/420 (63%), Positives = 333/420 (79%), Gaps = 2/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLY + + +M RG W ++ KG DWII+++K SGLRGRGGAGF+ Sbjct: 46 LKDKDRIFTNLYENFDRHIDGAMKRGDWFKTKDLINKGPDWIIDQIKKSGLRGRGGAGFN 105 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPK D RP YLV+N+DESEPGTCKDR+I+R++PH L+EG ++ F + A Sbjct: 106 SGLKYSFMPKSNPDGRPSYLVINSDESEPGTCKDREIVRNDPHKLVEGALLVGFGMRARA 165 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE Y G LG N+ GY+ D+ VH GAGAYICGEETAL+ Sbjct: 166 AYIYIRGEFYNESRRLQEAIDEAYQKGFLGKNACGTGYEFDVYVHRGAGAYICGEETALI 225 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G+PRLKPPFPA VGL+ CPTTV NVE++AVVPTILRR W++GFGR+NN GT Sbjct: 226 ESIEGKQGKPRLKPPFPAGVGLFSCPTTVTNVETVAVVPTILRRSPEWFAGFGRKNNAGT 285 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL++ISGHVN PC VEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP +P Sbjct: 286 KLYAISGHVNTPCVVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLIPKEICE 345 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAV+VMD+STDI+ AI RLS FY HESCGQCTPCREGTGW++ Sbjct: 346 TVLMDFDALREVQSGLGTAAVMVMDKSTDIVDAIARLSKFYAHESCGQCTPCREGTGWLL 405 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M+R+VKG A+ EID L EVS+ IEG TICALGDAAAWP+QGLI++FR +E+RI +Y Sbjct: 406 NMMDRMVKGNAEIEEIDTLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRGEMEDRIKKY 465 >gi|17531727|ref|NP_496376.1| NADH Ubiquinone Oxidoreductase family member (nuo-1) [Caenorhabditis elegans] gi|3874218|emb|CAA90435.1| C. elegans protein C09H10.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 479 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M+RG W +I+ KG DWI+ E+K SGLRGRGGAGF Sbjct: 46 LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I A+GA A Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E Y +G LG + GY+ D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ + Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465 Query: 421 R 421 + Sbjct: 466 K 466 >gi|119500302|ref|XP_001266908.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya fischeri NRRL 181] gi|119415073|gb|EAW25011.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya fischeri NRRL 181] Length = 496 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSI 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDNQIMDFDSLKDSQTGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QYHR 421 +Y R Sbjct: 467 EYER 470 >gi|3184148|emb|CAA76757.1| NADH:ubiquinone oxidoreductase 51-kD subunit [Homo sapiens] Length = 464 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 273/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH G + GGWD LLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGFVTGGWDYLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|58332830|ref|NP_001011491.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus (Silurana) tropicalis] gi|57033091|gb|AAH88876.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Xenopus (Silurana) tropicalis] gi|89269885|emb|CAJ83800.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Xenopus (Silurana) tropicalis] Length = 468 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 272/425 (64%), Positives = 333/425 (78%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+KASGLRGRGGAGF Sbjct: 40 LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A ++GA A Sbjct: 100 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 159 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ AV E Y++GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 160 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 219 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 220 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNAGTK 279 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 280 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPQSVCET 339 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IVM++STDI++AI RL FYKHESCGQCTPCREG WM + Sbjct: 340 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 399 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R+ +G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ + Sbjct: 400 VMWRMCQGDARVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEKRMKLFD 459 Query: 421 RCNFQ 425 Q Sbjct: 460 TVKRQ 464 >gi|94468934|gb|ABF18316.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit [Aedes aegypti] Length = 486 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 60 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG W++ FGR N GTK Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL +IPGGSS P +P Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM + Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G + EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479 Query: 421 R 421 + Sbjct: 480 Q 480 >gi|115391293|ref|XP_001213151.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] gi|114194075|gb|EAU35775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] Length = 496 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 272/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LQDKDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGTAAV+VMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVVVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+RL G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP IE RI Sbjct: 407 TMQMMQRLETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPEIEARIQ 466 Query: 418 QYHR 421 +Y + Sbjct: 467 EYSK 470 >gi|548387|sp|P25708|NDUV1_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH dehydrogenase flavoprotein 1; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|109939909|gb|AAI18305.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Bos taurus] gi|296471573|gb|DAA13688.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Bos taurus] Length = 464 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450 >gi|242769552|ref|XP_002341788.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces stipitatus ATCC 10500] gi|218724984|gb|EED24401.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces stipitatus ATCC 10500] Length = 497 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 270/422 (63%), Positives = 333/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W +++ KG DW+I+E+KASGLRGRGGAGF Sbjct: 48 LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 108 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 167 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 168 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGTGYDFDVYLHRGAGAYVCGEETS 227 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+ Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 287 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCT+EE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 288 GTKLFCISGHVNNPCTIEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKKI 347 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 408 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 467 Query: 418 QY 419 +Y Sbjct: 468 KY 469 >gi|157116636|ref|XP_001658587.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes aegypti] gi|108876370|gb|EAT40595.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes aegypti] Length = 487 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 60 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG W++ FGR N GTK Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL +IPGGSS P +P Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM + Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G + EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479 Query: 421 R 421 + Sbjct: 480 Q 480 >gi|226528477|ref|NP_001141461.1| hypothetical protein LOC100273571 [Zea mays] gi|194704660|gb|ACF86414.1| unknown [Zea mays] Length = 504 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 271/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W +++ KG DW+I+E+KASGLRGRGGAGF Sbjct: 55 LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 114 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 115 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 174 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 175 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 234 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+ Sbjct: 235 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 294 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 295 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKNI 354 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 355 CDEQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 414 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 415 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 474 Query: 418 QYHR 421 +Y + Sbjct: 475 KYEQ 478 >gi|163412|gb|AAA30661.1| NADH dehydrogenase [Bos taurus] Length = 490 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 61 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 120 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 121 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 180 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 181 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 240 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 241 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 300 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 301 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 360 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 361 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 420 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 421 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 476 >gi|134110700|ref|XP_776177.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258845|gb|EAL21530.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var. neoformans B-3501A] Length = 534 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 269/428 (62%), Positives = 330/428 (77%), Gaps = 4/428 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNL+ + +++RG W I+ KG W+I VK SGLRGRGGAGF Sbjct: 75 LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134 Query: 62 TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F +SGHVN PC VEE MSI EL+EKHCGG+RGGW NL ++PGGSSVP + Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494 Query: 418 QYHRCNFQ 425 Q+H N Q Sbjct: 495 QFHAKNGQ 502 >gi|212542183|ref|XP_002151246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium marneffei ATCC 18224] gi|210066153|gb|EEA20246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium marneffei ATCC 18224] Length = 505 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 271/424 (63%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W ++ KG DW+I+E+KASGLRGRGGAGF Sbjct: 56 LKDQDRIFTNLYGHHGTDLKSAMKYGDWYKTKDMILKGHDWLISEIKASGLRGRGGAGFP 115 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 116 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 175 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 176 TAAYIYIRGEFYEEATTLQRAIHEAYQAGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 235 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRG SW++GFGRE N+ Sbjct: 236 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIMRRGGSWFAGFGRERNQ 295 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 296 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKSI 355 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 356 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 415 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 416 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 475 Query: 418 QYHR 421 QY + Sbjct: 476 QYEK 479 >gi|209154510|gb|ACI33487.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo salar] gi|223647304|gb|ACN10410.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo salar] gi|223673187|gb|ACN12775.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo salar] Length = 474 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 333/421 (79%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L + SRG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 48 LADQDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A A+GA A Sbjct: 108 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E YA+GL+G NS GYD D+ V GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNSCGSGYDFDVFVMRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+ GFGRE N GTK Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFLGFGRERNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKDLIERHAGGVRGGWDNLLCVIPGGSSTPLIPRSVCDT 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + +GLGTAA+IVMD+STD+I+AI RL FYKHESCGQCTPCREG WM + Sbjct: 348 VLMDFDGLVQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG A+ EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ Sbjct: 408 MMWRFVKGDARAAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPIMETRIAEFQ 467 Query: 421 R 421 + Sbjct: 468 Q 468 >gi|58265992|ref|XP_570152.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus neoformans var. neoformans JEC21] gi|57226385|gb|AAW42845.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 534 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 269/428 (62%), Positives = 330/428 (77%), Gaps = 4/428 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNL+ + +++RG W I+ KG W+I VK SGLRGRGGAGF Sbjct: 75 LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134 Query: 62 TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F +SGHVN PC VEE MSI EL+EKHCGG+RGGW NL ++PGGSSVP + Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494 Query: 418 QYHRCNFQ 425 Q+H N Q Sbjct: 495 QFHAKNGQ 502 >gi|67538918|ref|XP_663233.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Aspergillus nidulans FGSC A4] gi|40743532|gb|EAA62722.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Aspergillus nidulans FGSC A4] gi|259484902|tpe|CBF81519.1| TPA: NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Eurofung) [Aspergillus nidulans FGSC A4] Length = 497 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 270/422 (63%), Positives = 332/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LKDQDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVFIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++GFGRE N Sbjct: 227 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFAGFGRERNA 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNL AVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLKAVIPGGSSTPIIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVIVMDKSTDVVRAISRLSTFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++M+RL KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TLQMMQRLEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QY 419 +Y Sbjct: 467 EY 468 >gi|119194275|ref|XP_001247741.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Coccidioides immitis RS] Length = 529 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 79 LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498 Query: 418 QYHRCN 423 ++ + N Sbjct: 499 KFAQQN 504 >gi|226486986|emb|CAX75358.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 476 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 42 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R ++ Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460 >gi|226486984|emb|CAX75357.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 476 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 42 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R ++ Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460 >gi|302684473|ref|XP_003031917.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8] gi|300105610|gb|EFI97014.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8] Length = 501 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 272/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN Y L + SRG W I+ KG WII +K SGLRGRGGAGF Sbjct: 40 LKDQDRIFTNAYCRHDHGLKGAKSRGDWHRTKDIILKGDSWIIQTIKDSGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLVVNADE EPGTCKDR+I+R +PH LIEGC++A A+ A Sbjct: 100 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 159 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF +E +Q A++E YA+GL+G ++ GY D+ +H GAGAYICGEETA Sbjct: 160 TAAYIYIRGEFFQEASHVQQAINEAYAAGLIGKDACGSGYSFDVYLHRGAGAYICGEETA 219 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N+ Sbjct: 220 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNQ 279 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PC VEE MSI +LIEKHCGG+ GGWDNLL ++PGGSSVP LP + Sbjct: 280 GTKLFCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVIGGWDNLLGIVPGGSSVPILPIDK 339 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ SGLGT AVIVMD+STD++ AI R + FYKHESCGQCTPCREGT W Sbjct: 340 CSEVLMDYDSLKDAQSGLGTGAVIVMDKSTDVVSAIARFASFYKHESCGQCTPCREGTTW 399 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M R+V+G REID+L E+SK IEGRTICALGDAAAWPIQGL+++FRP +E+RI+ Sbjct: 400 MMNMMNRMVEGRGHVREIDMLLEISKQIEGRTICALGDAAAWPIQGLMRHFRPEVEKRIE 459 Query: 418 QYHRCN 423 ++ R N Sbjct: 460 EFRRAN 465 >gi|303311397|ref|XP_003065710.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105372|gb|EER23565.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] Length = 529 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 79 LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498 Query: 418 QYHRCN 423 ++ + N Sbjct: 499 KFAQQN 504 >gi|40538780|ref|NP_777233.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Bos taurus] gi|162864|gb|AAA30450.1| mitochondrial NADH dehydrogenase (ubiquinone) 51kDa subunit [Bos taurus] Length = 464 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 274/416 (65%), Positives = 324/416 (77%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 VM R V+G A+ EID L E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 395 VMARFVRGDARPAEIDSLCEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450 >gi|320039567|gb|EFW21501.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coccidioides posadasii str. Silveira] Length = 529 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 79 LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498 Query: 418 QYHRCN 423 ++ + N Sbjct: 499 KFAQQN 504 >gi|332373616|gb|AEE61949.1| unknown [Dendroctonus ponderosae] Length = 473 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 266/419 (63%), Positives = 327/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DR+FTNLYG L +M RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 46 LADEDRVFTNLYGRHDWRLKGAMKRGDWYKTKEILLKGSDWIVNELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM + RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA AIGA A Sbjct: 106 TGMKWSFMNRPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAIGAKAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTVNNVE+IAV P+I RRG W++ FGR N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADVGVFGCPTTVNNVETIAVSPSICRRGGPWFASFGRTRNSGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI EL+E H GG++GGWDNLLA+IPGGSS P +P Sbjct: 286 LFNISGHVNRPCTVEEEMSIPLKELVEIHAGGVQGGWDNLLAIIPGGSSTPLIPKSVCED 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG WM + Sbjct: 346 VLMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGVNWMNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R V G A+ EID+L+E+SK IEGR+ICAL D AAWP+QGLI++FRP +E+R+ ++ Sbjct: 406 MIYRFVDGNAKPEEIDMLWEISKQIEGRSICALADGAAWPVQGLIRHFRPELEDRMRKF 464 >gi|56753822|gb|AAW25108.1| SJCHGC01665 protein [Schistosoma japonicum] gi|226486990|emb|CAX75360.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 475 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 41 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R ++ Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 459 >gi|323453876|gb|EGB09747.1| hypothetical protein AURANDRAFT_24188 [Aureococcus anophagefferens] Length = 469 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 271/425 (63%), Positives = 332/425 (78%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + DQDRIFTNLYG + L D+ RG W I+ G DWI+ E+K SGLRGRGGAGF Sbjct: 1 VKDQDRIFTNLYGEEDWRLGDAKKRGDWHMTKDIMWMGPDWIVQEMKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LV+NADESEPGTCKDR+IMR +PH L+EGC++A +A+ A Sbjct: 61 SGLKWSFMPKASDGRPSFLVINADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAC 120 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E + A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEETAL+E Sbjct: 121 YIYIRGEYFNEAMVMDEAIHEAYTAGLIGKNACGSGYDFDMYLHRGAGAYVCGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVG++GCPTTV NVE+IAV PTILRRGASW++GFGR+NN GTK Sbjct: 181 SLEGKQGKPRLKPPFPANVGVFGCPTTVTNVETIAVAPTILRRGASWFTGFGRKNNAGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN P VEE MSI F ELI+KHCGG+RGGW+ L AVIPGGSSVP LP + Sbjct: 241 LFAISGHVNNPIVVEEEMSIPFRELIDKHCGGVRGGWNKLQAVIPGGSSVPVLPIEECEE 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D LK GSGLGTAAV VMD + D+I AI RL+ FY+HESCGQCTPCREGTGW+ Sbjct: 301 ALMDFDDLKARGSGLGTAAVTVMDDTVDMIAAIRRLAHFYRHESCGQCTPCREGTGWLET 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ G A REI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+P+IEERI Sbjct: 361 ILERMEVGDADVREIGMLDEISRQIEGHTICALGDAAAWPVQGLIRRFQPVIEERIADPQ 420 Query: 421 RCNFQ 425 +F+ Sbjct: 421 GFDFE 425 >gi|148222918|ref|NP_001080215.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus laevis] gi|27370996|gb|AAH41320.1| Ndufv1 protein [Xenopus laevis] gi|77748340|gb|AAI06321.1| Ndufv1 protein [Xenopus laevis] Length = 471 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 272/425 (64%), Positives = 330/425 (77%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L ++SRG W +IL KG DWI EVK SGLRGRGGAGF Sbjct: 41 LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWIQGEVKTSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A ++GA A Sbjct: 101 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 160 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ AV E Y++GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 161 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 220 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 221 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNSGTK 280 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 281 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPRSVCET 340 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IVM++STDI++AI RL FYKHESCGQCTPCREG WM + Sbjct: 341 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 400 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R+ +G A EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ + Sbjct: 401 VMWRMCRGDAHVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEQRMKLFD 460 Query: 421 RCNFQ 425 Q Sbjct: 461 TAKRQ 465 >gi|268532110|ref|XP_002631183.1| C. briggsae CBR-NUO-1 protein [Caenorhabditis briggsae] gi|187036977|emb|CAP23643.1| CBR-NUO-1 protein [Caenorhabditis briggsae AF16] Length = 479 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/421 (63%), Positives = 325/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L + +RG W +I+ KG DWI+ E+K SGLRGRGGAGF Sbjct: 46 LKDSDRIFTNLYGRHDYRLKGAQARGDWYKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I A+GA A Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E Y +G LG + GY+ D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKSVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ + Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465 Query: 421 R 421 + Sbjct: 466 K 466 >gi|325089901|gb|EGC43211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 512 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 62 LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481 Query: 418 QYHR 421 +Y + Sbjct: 482 KYEQ 485 >gi|225559879|gb|EEH08161.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] gi|225559929|gb|EEH08211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 512 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 62 LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481 Query: 418 QYHR 421 +Y + Sbjct: 482 KYEQ 485 >gi|55741424|ref|NP_001006973.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Rattus norvegicus] gi|54035438|gb|AAH83709.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Rattus norvegicus] gi|149061920|gb|EDM12343.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a [Rattus norvegicus] Length = 464 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 271/419 (64%), Positives = 326/419 (77%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ YD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSDYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVM+ STDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++ Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRF 453 >gi|71896123|ref|NP_001026754.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Gallus gallus] gi|53136784|emb|CAG32721.1| hypothetical protein RCJMB04_33n14 [Gallus gallus] Length = 459 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 277/419 (66%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +IL KG DWI+ E+KASGLRGRGGAGF Sbjct: 31 LKDEDRIFTNLYGRHEWRLQGALRRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 91 TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GLLG N+ Y D+ V GAGAYICGEETAL+E Sbjct: 151 YIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEETALIE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 211 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRERNSGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+RGGWDNLLAVIPGGSS P LP Sbjct: 271 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKSVCET 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAAVIVMD+STDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 331 VLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++ Sbjct: 391 VMARFVRGDAQAAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMRRF 449 >gi|73667105|ref|YP_303121.1| NADH dehydrogenase I subunit F [Ehrlichia canis str. Jake] gi|72394246|gb|AAZ68523.1| NADH dehydrogenase subunit F [Ehrlichia canis str. Jake] Length = 427 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 275/422 (65%), Positives = 326/422 (77%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DR+FTNLYG Q L + SRG W N+ +IL G D II EVK SGLRGRGGAGF Sbjct: 1 MLKDSDRVFTNLYGQQSPFLKSAKSRGVWSNILEILNLGPDHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK D +P YLVVNADESEPGTCKDRDI+R++PH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKDGQPAYLVVNADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A++Y+RGEF E L A+DE Y + L+G N+ GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYVYIRGEFYNEYLVLSKALDEAYKAKLIGKNACGSGYDLDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V I+RRG+ W++ G+ENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTVTMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+M+++VKG A IDLL ++ +EG TICALGDAAAWPIQGLI++FR +IE+RI Sbjct: 361 WRIMQKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRDVIEDRIKN 420 Query: 419 YH 420 Y+ Sbjct: 421 YN 422 >gi|2499312|sp|Q92406|NDUV1_ASPNG RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; Flags: Precursor gi|1556376|emb|CAA45744.1| 51kDa subunit of NADH:ubiquinone reductase (complex I) [Aspergillus niger] Length = 496 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 270/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 46 LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A++Y+RGEF +E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 166 NAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI+ ++I++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 406 TMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465 Query: 418 QYHR 421 +Y + Sbjct: 466 EYSK 469 >gi|296808193|ref|XP_002844435.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS 113480] gi|238843918|gb|EEQ33580.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS 113480] Length = 534 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/421 (64%), Positives = 329/421 (78%), Gaps = 4/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWII+EVK SGLRGRGGAGF Sbjct: 84 LKDQDRIFQNLYGRHPPDLKHAMKSGDWYKTKEIILKGHDWIISEVKTSGLRGRGGAGFP 143 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+ A+ A Sbjct: 144 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 203 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 204 TAAYIYIRGEFYEEATVLQQAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 263 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+ Sbjct: 264 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 323 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 324 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 383 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 384 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 443 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 444 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 503 Query: 418 Q 418 Q Sbjct: 504 Q 504 >gi|301771850|ref|XP_002921334.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 461 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 274/419 (65%), Positives = 325/419 (77%), Gaps = 5/419 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 36 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 95 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 96 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 155 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 156 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 215 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 216 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 275 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG WDNLLAVIPGGSS P +P Sbjct: 276 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 331 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 332 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 391 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 392 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 450 >gi|258567288|ref|XP_002584388.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii 1704] gi|237905834|gb|EEP80235.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii 1704] Length = 532 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 270/422 (63%), Positives = 331/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 82 LKDRDRIFQNLYGRHGPDLKNAMKTGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 141 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 142 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 201 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 202 TAAYIYIRGEFYEEATVLQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 261 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 262 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 321 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 322 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 381 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 382 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 441 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG +ICALG+A AWPIQGLI++FRP +E RI Sbjct: 442 TMQIMQRFERGQAREREIDMLQELTKQVEGHSICALGEAFAWPIQGLIRHFRPELEARIQ 501 Query: 418 QY 419 ++ Sbjct: 502 KF 503 >gi|73982783|ref|XP_851761.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 2 [Canis familiaris] Length = 460 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/419 (65%), Positives = 325/419 (77%), Gaps = 5/419 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG WDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 331 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 391 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 449 >gi|315042968|ref|XP_003170860.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] gi|311344649|gb|EFR03852.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] Length = 535 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 274/426 (64%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWIINEVK SGLRGRGGAGF Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIINEVKTSGLRGRGGAGFP 144 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+ A+ A Sbjct: 145 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 204 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV P I RRG W++GFGRE N+ Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPAICRRGGKWFAGFGRERNQ 324 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 384 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504 Query: 418 QYHRCN 423 Q + N Sbjct: 505 QNAQAN 510 >gi|261199832|ref|XP_002626317.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081] gi|239594525|gb|EEQ77106.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081] gi|239607916|gb|EEQ84903.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ER-3] gi|327357999|gb|EGE86856.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ATCC 18188] Length = 518 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 272/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 68 LKDQDRIFQNLYGNHGADLKTAMKFGDWYKTKEIMLKGHDWIISEIKASGLRGRGGAGFP 127 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 128 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 187 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E S+Q A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 188 TAAYIYIRGEFYNEATSVQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 247 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 248 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGKWFASFGRERNQ 307 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 308 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 367 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 368 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 427 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 428 TYQMMKRFESGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 487 Query: 418 QYHR 421 +Y + Sbjct: 488 KYEQ 491 >gi|302658280|ref|XP_003020846.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517] gi|291184712|gb|EFE40228.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517] Length = 595 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 145 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 204 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A Sbjct: 205 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 265 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+ Sbjct: 325 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 385 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 444 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 445 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 504 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 505 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEGRIR 564 Query: 418 QYHRCN 423 Q + N Sbjct: 565 QNAQAN 570 >gi|190895760|gb|ACE96393.1| esterase/lipase/thioesterase [Populus tremula] gi|190895774|gb|ACE96400.1| esterase/lipase/thioesterase [Populus tremula] Length = 396 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 272/396 (68%), Positives = 317/396 (80%), Gaps = 1/396 (0%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP Sbjct: 1 NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K+ RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A+IY+RGE++ Sbjct: 61 KISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLESLEGK+G+P Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTKLF +SGHVN Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP +MDYD LK Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ +MERL G Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396 >gi|46134221|ref|XP_389426.1| NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Gibberella zeae PH-1] Length = 486 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/426 (63%), Positives = 334/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY L + G W +I+ KG DWII+EVKASGLRGRGGAGF Sbjct: 37 LRDQDRIFQNLYNRYPVDLKSARKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLV+NADE EPGTCKDR+IMR +PH LIEGC+I+ A+ A Sbjct: 97 SGLKWSFMNFKDWDKDNKPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E YA+GL+G N+ + GYD D+ +H GAGAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYAAGLIGKNACESGYDFDVYLHRGAGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGSWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 277 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKSV 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQMMKRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QYHRCN 423 ++ + N Sbjct: 457 KFAQEN 462 >gi|302498901|ref|XP_003011447.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371] gi|291174998|gb|EFE30807.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371] Length = 535 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 144 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A Sbjct: 145 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 204 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+ Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 324 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 384 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504 Query: 418 QYHRCN 423 Q + N Sbjct: 505 QNAQAN 510 >gi|225713920|gb|ACO12806.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Lepeophtheirus salmonis] Length = 463 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 325/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +MSRG W +I+ KG DWIINEVK SGLRGRGGAGF Sbjct: 34 LKDSDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIINEVKVSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 94 SGMKWSFMQKPDDGRPKYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 153 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGEF E +LQ A+ E Y G LG NS GYD D+ VH GAGAYICGEETAL+E Sbjct: 154 YIYVRGEFYNETTNLQVAIKEAYTKGFLGKNSCGTGYDFDVFVHRGAGAYICGEETALIE 213 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+S FGR N GTK Sbjct: 214 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGTWFSSFGRPRNTGTK 273 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF++SGHVN PCTVEE MS+ ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 274 LFNVSGHVNNPCTVEEEMSVPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPKHVCND 333 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ D++KAI RL+ FYKHESCGQCTPCREG WM Sbjct: 334 VMMDFDALIAAQTGLGTAAVIVMNKQCDVVKAIARLATFYKHESCGQCTPCREGCNWMDT 393 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G AQ EID+L+E++K IEG TICAL D AAWP+QGLI++FRP +E R ++YH Sbjct: 394 MMWRFVEGNAQAGEIDMLWELTKQIEGHTICALADGAAWPVQGLIRHFRPELEARFEEYH 453 Query: 421 R 421 R Sbjct: 454 R 454 >gi|321258005|ref|XP_003193778.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus gattii WM276] gi|317460248|gb|ADV21991.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Cryptococcus gattii WM276] Length = 495 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 266/423 (62%), Positives = 328/423 (77%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNL+ + +++RG W I+ KG WII VK SGLRGRGGAGF Sbjct: 36 LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWIIQTVKDSGLRGRGGAGFP 95 Query: 62 TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 96 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 155 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 156 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 215 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N Sbjct: 216 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 275 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK++ +SGHVN PC VEE MSI EL+EKHCGG+RGGW NL ++PGGSSVP + Sbjct: 276 GTKVYCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVITRET 335 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ G+ LGT AVIVMD +TD+I AI R S FYKHESCGQCTPCREGT W Sbjct: 336 SEKCLMDYDSLKDNGTSLGTGAVIVMDNTTDMIAAIARFSKFYKHESCGQCTPCREGTSW 395 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ Sbjct: 396 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 455 Query: 418 QYH 420 Q+H Sbjct: 456 QFH 458 >gi|190895764|gb|ACE96395.1| esterase/lipase/thioesterase [Populus tremula] gi|190895766|gb|ACE96396.1| esterase/lipase/thioesterase [Populus tremula] gi|190895768|gb|ACE96397.1| esterase/lipase/thioesterase [Populus tremula] gi|190895770|gb|ACE96398.1| esterase/lipase/thioesterase [Populus tremula] Length = 396 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP Sbjct: 1 NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A+IY+RGE++ Sbjct: 61 KTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLESLEGK+G+P Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTKLF +SGHVN Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP +MDYD LK Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ +MERL G Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396 >gi|171682190|ref|XP_001906038.1| hypothetical protein [Podospora anserina S mat+] gi|170941054|emb|CAP66704.1| unnamed protein product [Podospora anserina S mat+] Length = 497 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII E+KASGLRGRGGAGF Sbjct: 48 LRDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEILLKGHDWIIGEIKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 108 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 167 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQ A++E YA GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 168 SAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYVHRGGGAYVCGEETS 227 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 228 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 287 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 288 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHV 347 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 408 TEQIMQRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 467 Query: 418 QYHRCN 423 ++ + N Sbjct: 468 KFAQEN 473 >gi|190895762|gb|ACE96394.1| esterase/lipase/thioesterase [Populus tremula] gi|190895772|gb|ACE96399.1| esterase/lipase/thioesterase [Populus tremula] Length = 396 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP Sbjct: 1 NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A+IY+RGE++ Sbjct: 61 KASDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLESLEGK+G+P Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTKLF +SGHVN Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP +MDYD LK Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ +MERL G Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396 >gi|85086245|ref|XP_957659.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A] gi|67477366|sp|P24917|NDUV1_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; Flags: Precursor gi|28918753|gb|EAA28423.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A] gi|39979235|emb|CAE85605.1| NADH2 dehydrogenase (ubiquinone) flavoprotein 1 precursor [Neurospora crassa] Length = 493 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/426 (63%), Positives = 332/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII EVKASGLRGRGGAGF Sbjct: 44 LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI+E LQ A++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 283 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 463 Query: 418 QYHRCN 423 ++ + N Sbjct: 464 KFAQEN 469 >gi|310800932|gb|EFQ35825.1| NADH oxidoreductase [Glomerella graminicola M1.001] Length = 477 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 268/422 (63%), Positives = 330/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG +L+ + G W +I+ KG DWII+EVKASGLRGRGGAGF Sbjct: 27 LKDQDRIFQNLYGRMPPTLASAKKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 86 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 87 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 146 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E Y GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 147 SAAYIYIRGEFVHEAAVLQNAINEAYKDGLIGKNACNSGYDFDVFIHRGAGAYVCGEETS 206 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 207 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 266 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 267 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNV 326 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W Sbjct: 327 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 386 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E+R++ Sbjct: 387 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEKRME 446 Query: 418 QY 419 +Y Sbjct: 447 EY 448 >gi|320589001|gb|EFX01469.1| NADH-ubiquinone oxidoreductase mitochondrial precursor [Grosmannia clavigera kw1407] Length = 525 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 267/422 (63%), Positives = 330/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY L + G W +IL KG +WII+EVKASGLRGRGGAGF Sbjct: 76 LKDQDRIFQNLYSRYPPDLKHARKMGDWHKTKEILLKGHEWIISEVKASGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 136 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 195 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E E LQAA++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 196 TAAYIYIRGEFVYEAEVLQAAINEAYAEGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 255 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VG++GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 256 LIESIEGKPGKPRLKPPFPAAVGVFGCPSTVTNVETVAVAPTICRRGGAWFAGFGRERNQ 315 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWD LLAVIPGGSS P LP Sbjct: 316 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDKLLAVIPGGSSTPILPKSM 375 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 376 CEDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 435 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 436 TEQIMSRFEKGMGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 495 Query: 418 QY 419 ++ Sbjct: 496 KF 497 >gi|295669264|ref|XP_002795180.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb01] gi|226285114|gb|EEH40680.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb01] Length = 515 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 270/424 (63%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 65 LKDQDRIFQNLYGHHGADLKTAMKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 244 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484 Query: 418 QYHR 421 +Y + Sbjct: 485 KYEQ 488 >gi|48097536|ref|XP_391916.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Apis mellifera] Length = 469 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 268/421 (63%), Positives = 323/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +I+EKG DWIINE+K SGLRGRGGAGF Sbjct: 45 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVEKGADWIINEIKVSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 105 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD DI V GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACGSGYDFDIFVQRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + + GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 VLLDFDDLVRVQTSFGTAAVIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGISWMYK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE RI Q+ Sbjct: 405 IMRRFVQGQAEVHEIDMLWELTKQIEMHTICALADGAAWPVQGLIRHFRPEIEARIAQHK 464 Query: 421 R 421 + Sbjct: 465 Q 465 >gi|164662034|ref|XP_001732139.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966] gi|159106041|gb|EDP44925.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966] Length = 509 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 262/422 (62%), Positives = 331/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +++RG W I+E+G ++IIN++KASG+RGRGGAGF Sbjct: 43 LRDQDRIFQNLYGQHDFRLKGALARGDWHRTRDIIERGHEFIINQMKASGIRGRGGAGFP 102 Query: 62 TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM K RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A A+GA Sbjct: 103 SGMKWSFMLKPGWEKDPRPRYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGA 162 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E +LQ A++E Y +GL+G N+ GYD D+ VH GAGAYICGEETA Sbjct: 163 NAAYIYIRGEFFLEAYNLQVAINEAYKAGLIGKNACGSGYDFDVYVHRGAGAYICGEETA 222 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PR+KPPFPA+ G++GCPTTV NVE+++V PTI+RRG W++ FGRE N Sbjct: 223 LIESLEGKQGKPRMKPPFPADTGVFGCPTTVANVETVSVAPTIIRRGPEWFASFGRERNH 282 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL++ISGHVN PC VEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 283 GTKLYAISGHVNRPCVVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSTPMIPKEV 342 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D L++ S LGT AVIVMD+STD++KAI RL+ FY HESCGQCTPCREGT W Sbjct: 343 CERTLMDFDSLRDNQSALGTGAVIVMDKSTDLVKAIARLTKFYHHESCGQCTPCREGTAW 402 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +M R G A REID+++E+++ +EG TIC L DA+AWPIQGL+++FRP++EERI Sbjct: 403 LDSMMTRFENGRASLREIDMIWEITRQMEGHTICGLADASAWPIQGLLRHFRPVVEERIK 462 Query: 418 QY 419 +Y Sbjct: 463 EY 464 >gi|322698851|gb|EFY90618.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium acridum CQMa 102] Length = 486 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 268/426 (62%), Positives = 331/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG +L + G W +I+ KG DWIINE+KASGLRGRGGAGF Sbjct: 37 LKDQDRIFQNLYGRLPPNLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 97 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E Y GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R +G ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QYHRCN 423 ++ + N Sbjct: 457 KFAQEN 462 >gi|83025076|ref|NP_001032653.1| hypothetical protein LOC641566 [Danio rerio] gi|82414771|gb|AAI10121.1| Zgc:123290 [Danio rerio] Length = 479 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 270/419 (64%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L + +RG W ++L KG +WI+NE+K SGLRGRGGAGF Sbjct: 48 LSDEDRIFTNLYGRHDWRLKGAEARGDWYKTKEVLLKGHEWILNEMKKSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 108 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +G LG N+ GYD D+ VH GAGAYICGE+TAL+E Sbjct: 168 YIYIRGEFYNEGTNLQVAIHEAYKAGYLGKNACNSGYDFDVFVHRGAGAYICGEKTALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI+RRG W++ GR N GTK Sbjct: 228 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTIVRRGGEWFASLGRPRNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI EL+EKH GG+ GGWDNLLA+ PGGSSVP LP Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELVEKHAGGVLGGWDNLLAITPGGSSVPMLPKNLCEE 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TD++KAI RLS FYKHESCGQCTPCREGTGW+ + Sbjct: 348 VLMDFDSLLAAQSGLGTAAVIVMNKQTDVVKAIARLSEFYKHESCGQCTPCREGTGWLTK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R V G A+ EID+++E++K IEG TICALGDAAAWP+QGLI++FRP +E R+ +Y Sbjct: 408 MMYRFVDGNARPEEIDMIWELTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMQEY 466 >gi|331226611|ref|XP_003325975.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309304965|gb|EFP81556.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 511 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N Y L + +RG W I+ KG ++II E+K SGLRGRGGAGF Sbjct: 49 LKDQDRIFQNAYMKHDHLLQGAQARGDWHKTKDIILKGHEFIIKEIKESGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQAA+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 169 SAAYIYIRGEFIMEAHHLQAAIDEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PC VEE MSI +LI+KHCGG+ GGWDNLL ++PGGSSVP L + Sbjct: 289 GTKLFCISGHVNNPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 A+MD+D LK++ SGLGT AVIVM++STDI+ AI R + FYKHESCGQCTPCREGT W Sbjct: 349 CEEALMDFDSLKDLYSGLGTGAVIVMNKSTDIVAAIARFAKFYKHESCGQCTPCREGTTW 408 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++M+R V G A +REID+L+E+++ IE TICALGDAAAWPIQGL++ F+P IE RI Sbjct: 409 MEKMMDRFVVGRAHEREIDMLWELTRQIENHTICALGDAAAWPIQGLLRKFKPEIEARIQ 468 Query: 418 QYHRCN 423 + N Sbjct: 469 DFRAKN 474 >gi|307195432|gb|EFN77318.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Harpegnathos saltator] Length = 470 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 1/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLYG L ++SRG W +IL+KG DWIINE+K SGLRGRGGAGF Sbjct: 46 LSDQDRIFTNLYGRHDWRLKGAISRGDWHKTKEILDKGADWIINEIKVSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+NADE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 106 SGMKWSFMNKPSDGRPKYLVINADEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GY+ DI V GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYNFDIFVQRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RR +W++ FGR N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNHGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNL+ VIPGGSS P +P Sbjct: 286 LFNISGHVNKPCTVEEEMSIPLKELIERHAGGVIGGWDNLMGVIPGGSSTPVIPKSVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 346 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ Q Sbjct: 406 ILKRFVEGNAEMHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKQQK 465 Query: 421 RCNF 424 F Sbjct: 466 EVAF 469 >gi|71004398|ref|XP_756865.1| hypothetical protein UM00718.1 [Ustilago maydis 521] gi|46095874|gb|EAK81107.1| hypothetical protein UM00718.1 [Ustilago maydis 521] Length = 846 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/426 (62%), Positives = 326/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N Y L + +RG W IL KG DWII+++K SG+RGRGGAGF Sbjct: 387 LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 446 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 447 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 506 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IYVRGEF E LQ A+ E YA GL+G N+ GYD D+ VH GAGAYICGEETA Sbjct: 507 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 566 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A PTI+RRG SW++GFGR+ N+ Sbjct: 567 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPSWFAGFGRDKNQ 626 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF+ISGHVN PC VEE MSI ELIE+HCGG+RGGWDNLL ++PGGSSVP LP + Sbjct: 627 GTKLFAISGHVNNPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 686 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D L+E S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W Sbjct: 687 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 746 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +MER +G REID++YE++K +EG TICAL DAAAWPIQGL++ FRP IEER+ Sbjct: 747 LANMMERFEEGRGNNREIDMIYELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 806 Query: 418 QYHRCN 423 Y N Sbjct: 807 LYQEKN 812 >gi|73982787|ref|XP_533212.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 1 [Canis familiaris] Length = 464 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/419 (64%), Positives = 323/419 (77%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRL P ++ G++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLNPSSHSSTGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|170578164|ref|XP_001894295.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Brugia malayi] gi|158599191|gb|EDP36876.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative [Brugia malayi] Length = 481 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 268/423 (63%), Positives = 321/423 (75%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M G W ++L KG+DWII E+ ASG+RGRGGAGF Sbjct: 46 LKDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM + RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA A Sbjct: 106 TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A+ E Y +G +G NS GY D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA P I +RGA WYS FGRE N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAKWYSSFGRERNHGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV PCTVEE MSI ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P Sbjct: 286 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L + +GLGTAAVIVM++ DI+K I RLS FY+HESCGQCTPCREGT W+ Sbjct: 346 VLMDYDALVAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R VKG A+ EID L+E+SK IE TICALGDAAAWP+QGLI++FRP IE RI +Y Sbjct: 406 VMWRFVKGQAKSSEIDSLWEISKQIEAHTICALGDAAAWPVQGLIRHFRPEIEHRISEYQ 465 Query: 421 RCN 423 N Sbjct: 466 AKN 468 >gi|260827659|ref|XP_002608782.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae] gi|229294134|gb|EEN64792.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae] Length = 475 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 265/421 (62%), Positives = 322/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M+RG + +I+ KG DWI+ E+ SGLRGRGGAGF Sbjct: 47 LSDEDRIFTNLYGRHDWKLKGAMARGDYYKTKEIILKGHDWILKEIVKSGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 107 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGVAMGARAA 166 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +L A+ E Y +GL+G N+ GYD DI VH GAGAYICGEET+L+E Sbjct: 167 YIYIRGEFYNEGTNLMVAIQEAYKAGLIGKNACGSGYDFDIYVHRGAGAYICGEETSLIE 226 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG W+ G GR N GTK Sbjct: 227 SLEGKAGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGMGRTRNSGTK 286 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG VN PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 287 LFNISGQVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPRSVCDD 346 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + + LGTAAVIV ++ D++K I RL FYKHESCGQCTPCREGTGWM + Sbjct: 347 VMMDFDALVQSQTALGTAAVIVFNKQADVVKGIARLIEFYKHESCGQCTPCREGTGWMTK 406 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G A+ EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R++ YH Sbjct: 407 IMYRFVEGNARPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMEAYH 466 Query: 421 R 421 + Sbjct: 467 K 467 >gi|302895873|ref|XP_003046817.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256727744|gb|EEU41104.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 486 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 272/422 (64%), Positives = 328/422 (77%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWII EVKASGLRGRGGAGF Sbjct: 37 LRDQDRIFQNLYGRYPVDLKSAKRMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 97 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E YA GL+G N+ GYD D+ VH GAGAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYADGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGNWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 277 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQIMSRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QY 419 ++ Sbjct: 457 KF 458 >gi|242001646|ref|XP_002435466.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative [Ixodes scapularis] gi|215498802|gb|EEC08296.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative [Ixodes scapularis] Length = 477 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 271/420 (64%), Positives = 328/420 (78%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIF NLYG L +MSRG W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 48 LSDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIIDEIKKSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A A+GA A Sbjct: 108 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLVAGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +G LG N+ GYD D+ VH GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNEASNLQIAIREAYQAGYLGKNACGSGYDFDVFVHRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W++ FGR N GTK Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGEWFASFGRTRNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDD 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ TD+I+AI RL FYKHESCGQCTPCREG GW+ + Sbjct: 348 VLMDFDALVAAQTGLGTAAVIVMNKQTDMIRAIARLLEFYKHESCGQCTPCREGVGWLHK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID++YE+SK IEG TICALGD AAWP+QGL+++FRPL+EERI Q+ Sbjct: 408 MMGRFVSGNARVDEIDMVYELSKQIEGHTICALGDGAAWPVQGLVRHFRPLMEERIRQFQ 467 >gi|225682624|gb|EEH20908.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb03] Length = 515 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++ G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 65 LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484 Query: 418 QYHR 421 Y + Sbjct: 485 NYEQ 488 >gi|226290045|gb|EEH45529.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb18] Length = 515 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++ G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 65 LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484 Query: 418 QYHR 421 Y + Sbjct: 485 NYEQ 488 >gi|169606386|ref|XP_001796613.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15] gi|111064942|gb|EAT86062.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15] Length = 502 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/426 (63%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 53 LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKASGLRGRGGAGFP 112 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A Sbjct: 113 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 172 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E L+ A+ E Y +G +G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 173 TAAYIYIRGEFYHEAAVLERAIQEAYKAGFIGKNACGSGYDFDVYVHRGMGAYVCGEETS 232 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+ Sbjct: 233 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 292 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF+ISGHVN+PCTVEE MSI ELI+KHCGG+ GGWDNL AVIPGGSS P LP Sbjct: 293 GTKLFAISGHVNHPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKAVIPGGSSTPILPKHV 352 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W Sbjct: 353 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 412 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Sbjct: 413 THQIMDRFNKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIQ 472 Query: 418 QYHRCN 423 Y N Sbjct: 473 GYAEKN 478 >gi|289615344|emb|CBI57930.1| unnamed protein product [Sordaria macrospora] Length = 493 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 271/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII EVKASGLRGRGGAGF Sbjct: 44 LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 104 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 163 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQ A++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 164 TAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 223 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++ FGRE N+ Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFASFGRERNQ 283 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 284 GTKLYCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 344 CDDQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 463 Query: 418 QYHRCN 423 ++ + N Sbjct: 464 KFAQEN 469 >gi|296425638|ref|XP_002842347.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638611|emb|CAZ86538.1| unnamed protein product [Tuber melanosporum] Length = 499 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/426 (62%), Positives = 326/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +IL KG DWII E+K SGLRGRGGAGF Sbjct: 50 LKDQDRIFQNLYGHHGTDLKSAMKYGDWYKTKEILLKGHDWIIGEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 110 SGMKWSFMTPPGWNTGTTPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMEA 169 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y++GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 170 TAAYIYIRGEFYHEATVLQRAIQEAYSAGLIGKNACGSGYDFDVFVHRGMGAYVCGEETS 229 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+++V PTI RRG SW++ FGR+ N Sbjct: 230 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETVSVAPTICRRGGSWFASFGRKRNE 289 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL A+IPGGSS P LP Sbjct: 290 GTKLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLQAIIPGGSSTPILPRKI 349 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK++ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGT W Sbjct: 350 CDDVLMDFDALKDVQSGLGTAAVIVMDKSTDVVRAISRLSKFYKHESCGQCTPCREGTRW 409 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER KG ++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ Sbjct: 410 TAQIMERFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMQ 469 Query: 418 QYHRCN 423 + + + Sbjct: 470 AHAQAS 475 >gi|322710840|gb|EFZ02414.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium anisopliae ARSEF 23] Length = 486 Score = 568 bits (1464), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/426 (62%), Positives = 329/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWIINE+KASGLRGRGGAGF Sbjct: 37 LKDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 97 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E Y GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGGGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLA+IPGGSS P LP Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAIIPGGSSTPILPKNI 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R +G ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QYHRCN 423 ++ + N Sbjct: 457 KFAQEN 462 >gi|288856265|ref|NP_001165788.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Nasonia vitripennis] Length = 472 Score = 568 bits (1464), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/421 (63%), Positives = 321/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W +IL+KG DWIINEVK SGLRGRGGAGF Sbjct: 45 LKDEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEILDKGADWIINEVKVSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+N DE EPGTCKDR+I+RH+PH LIEGC+IA A+GA A Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLIEGCLIAGRAMGACAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + Q A+ E Y +GLLG N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNTQVAIAEAYQAGLLGKNACGSGYDFDVFVQRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV P I RRG SW++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPAICRRGGSWFASFGRPRNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL +IPGGSS P +P Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGIIPGGSSTPVIPKHICDT 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L + S GTAA+IVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 VLMDYDDLVRVQSSFGTAAIIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGIAWMYK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ + Sbjct: 405 IMQRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIESRMLNFK 464 Query: 421 R 421 + Sbjct: 465 K 465 >gi|170112662|ref|XP_001887532.1| predicted protein [Laccaria bicolor S238N-H82] gi|164637434|gb|EDR01719.1| predicted protein [Laccaria bicolor S238N-H82] Length = 501 Score = 568 bits (1464), Expect = e-160, Method: Compositional matrix adjust. Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN Y + ++SRG W I+ KG WII ++K SGLRGRGGAGF Sbjct: 41 LKDQDRIFTNAYCRHDHGIKGALSRGDWHRTKDIILKGDAWIIQQIKDSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A ++ A Sbjct: 101 SGLKWSFMNKPGWQNDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRSMNA 160 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF +E +Q A+ E Y +GLLG N+ GY D+ VH GAGAYICGEETA Sbjct: 161 TAAYIYIRGEFYQEASHVQQAIHEAYTAGLLGPNACGSGYAFDVYVHRGAGAYICGEETA 220 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRGASW++GFGRE N+ Sbjct: 221 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGASWFAGFGRERNQ 280 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PC VEE MSI +LIEKHCGG+ GGWDNLL ++PGGSSVP +P Sbjct: 281 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVVGGWDNLLGIVPGGSSVPVIPKDV 340 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ +GLGT AVIVM++STDI+ AI R S FYKHESCGQCTPCREGT W Sbjct: 341 CAEVLMDYDSLKDAQTGLGTGAVIVMNKSTDIVAAIARFSQFYKHESCGQCTPCREGTTW 400 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M R+V+G REID+L E++K +EGRTICALGDAAAWPIQGL+++FRP +E RI Sbjct: 401 MMNMMNRMVEGRGHLREIDMLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVERRIQ 460 Query: 418 QYHRCN 423 ++ N Sbjct: 461 EFRAVN 466 >gi|328856677|gb|EGG05797.1| hypothetical protein MELLADRAFT_43743 [Melampsora larici-populina 98AG31] Length = 510 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/426 (62%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N Y L + +RG W I+ KG D++I E+K SGLRGRGGAGF Sbjct: 49 LRDSDRIFQNAYMRHDHLLKGAQARGDWHRTKDIILKGHDYLIKEIKDSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQ A++E Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 169 SAAYIYIRGEFIMEAAHLQNAIEEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PC VEE MSI +LI+KHCGG+ GGWDNLL ++PGGSSVP L + Sbjct: 289 GTKLFCISGHVNTPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 A+MD+D LK++ SGLGT AVIVM++STD+I AI R + FYKHESCGQCTPCREGT W Sbjct: 349 CEEALMDFDSLKDLQSGLGTGAVIVMNKSTDMISAIARFAKFYKHESCGQCTPCREGTTW 408 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++M+RLV G A +RE+D+L+E+++ IEG TICALGDAAAWPIQGL++ F+P +E RI Sbjct: 409 MEKIMDRLVVGRAHERELDMLWELTRQIEGHTICALGDAAAWPIQGLLRKFKPEVEARIQ 468 Query: 418 QYHRCN 423 ++ N Sbjct: 469 EFRSKN 474 >gi|321467624|gb|EFX78613.1| hypothetical protein DAPPUDRAFT_53209 [Daphnia pulex] Length = 437 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG LS +M RG W +IL KG DWI+NEVK SGLRGRGGAGF Sbjct: 8 LKDEDRIFTNLYGRHDWRLSGAMKRGDWYKTKEILLKGVDWILNEVKKSGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 68 SGMKWSFMNKPSDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 127 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y GL+G N+ + GYD D+ VH GAGAYICGEETAL+E Sbjct: 128 YIYIRGEFYNEGTNVQVAIHEAYKQGLIGKNACESGYDFDVFVHRGAGAYICGEETALIE 187 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG W+ GFGR N GTK Sbjct: 188 SIEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGFGRPRNSGTK 247 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H G+ GGWDNLLAVIPGGSS P +P Sbjct: 248 LFNISGHVNNPCTVEEEMSIPLRELIERHARGVVGGWDNLLAVIPGGSSTPMIPRKVCDD 307 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAA+IVM++ TD+I+AI RL FYKHESCGQCTPCREGTGWM + Sbjct: 308 VLMDFDALVAAQTGLGTAALIVMNKQTDVIRAIARLIEFYKHESCGQCTPCREGTGWMNK 367 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R V+G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ ++ Sbjct: 368 IMYRFVEGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPEIEDRMKRF 426 >gi|224009243|ref|XP_002293580.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana CCMP1335] gi|220970980|gb|EED89316.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana CCMP1335] Length = 499 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/417 (64%), Positives = 327/417 (78%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLYG Q L D++ RG + +++ G DWI+ E+K SGLRGRGGAGF Sbjct: 44 LSDQDRIFTNLYGEQDWRLKDALKRGDYHLTKEMMWMGPDWIVQEIKDSGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH LIEGC+IA +A+ A A Sbjct: 104 SGLKWSFMPKESDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCLIAGYAMRARAA 163 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E L A+ E YA+GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 164 YIYIRGEYFNEAVVLDEAIHEAYAAGLIGKNACGSGYDFDVYLHRGAGAYICGEETALIE 223 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++GFG NNRGTK Sbjct: 224 SLEGRQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVSPTILRRGASWFAGFGNPNNRGTK 283 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV P VEESMSI ELIEKHCGG+R GWD L A IPGGSSVP L Q Sbjct: 284 LFAISGHVKNPIVVEESMSIPLQELIEKHCGGMRNGWDTLQACIPGGSSVPVLNKAQCDE 343 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+M++D L+ GSGLGTAAV + D S D++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 344 ALMEFDDLRAKGSGLGTAAVTMFDNSVDMVGAIRRLSHFYKHESCGQCTPCREGTSWLED 403 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+ IE+RID Sbjct: 404 ILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRID 460 >gi|3032|emb|CAA39676.1| 51 kD subunit of NADH dehydrogenase (ubiquinone) [Neurospora crassa] Length = 493 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 270/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII EVKASGLRGRGGAGF Sbjct: 44 LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI+E LQ A++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+ V PTI RRG +W++GFGRE N+ Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETAVVAPTICRRGGNWFAGFGRERNQ 283 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+ AWPIQGLI++FRP +E RI Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGERFAWPIQGLIRHFRPELEARIR 463 Query: 418 QYHRCN 423 ++ + N Sbjct: 464 KFAQEN 469 >gi|189183823|ref|YP_001937608.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str. Ikeda] gi|189180594|dbj|BAG40374.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Ikeda] Length = 422 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 272/421 (64%), Positives = 326/421 (77%), Gaps = 2/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +D+IFTNL G L+ + RG W ++ R+WII E+K SGLRGRGGAGF Sbjct: 1 MLNIEDKIFTNLSGSMAVDLASAKKRGDWHATKDLILNSREWIIEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S++ YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA Sbjct: 61 PTGLKWSFMPK-NSEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E LQ A+ E Y + L+G NS ++ ++ +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYDARLIGLNSCGTDFNFNLYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPAN+GLYGCPTT+NNVESIAVVPTILRRGA W++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPANIGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FSISGHVN PC +EE+M + LIEK+ GG+RGGWDNL A+IPGGSSVP +P Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D LK +GSGLGT +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TVEMDFDSLKSVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M RLVKG A +ID+L +V+K IEG TICALGDAAAWPIQGLIK+FR IE+RI + Sbjct: 360 RIMMRLVKGSASVSDIDMLLDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419 Query: 420 H 420 + Sbjct: 420 N 420 >gi|72087543|ref|XP_791098.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 2 [Strongylocentrotus purpuratus] gi|115924268|ref|XP_001178353.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 1 [Strongylocentrotus purpuratus] Length = 471 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/420 (63%), Positives = 327/420 (77%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M+RG W +IL KG DWI+ E++ SGLRGRGGAGF Sbjct: 42 LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETA++E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PCTVEESMSI LIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ D+I+ I RL FY+HESCGQCTPCREGTGWM + Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + R V+G A+ EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461 >gi|115647097|ref|XP_001178525.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 1 [Strongylocentrotus purpuratus] gi|115924266|ref|XP_001178444.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 2 [Strongylocentrotus purpuratus] Length = 471 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/420 (63%), Positives = 327/420 (77%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M+RG W +IL KG DWI+ E++ SGLRGRGGAGF Sbjct: 42 LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETA++E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PCTVEESMSI LIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ D+I+ I RL FY+HESCGQCTPCREGTGWM + Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + R V+G A+ EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461 >gi|255724736|ref|XP_002547297.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] gi|15425872|gb|AAK97627.1|AF399714_1 NADH dehydrogenase complex I 51 kDa subunit [Candida tropicalis] gi|240135188|gb|EER34742.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 489 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/423 (63%), Positives = 328/423 (77%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 33 LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 92 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 93 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 152 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEETA Sbjct: 153 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYVCGEETA 212 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG W++ FGRE N Sbjct: 213 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 272 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI+GGWDNLL VIPGGSSVP +P Sbjct: 273 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPIMPKET 332 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 333 CDHVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 392 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R KG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI Sbjct: 393 LQRMMDRFYKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 452 Query: 418 QYH 420 Q+ Sbjct: 453 QFQ 455 >gi|330914723|ref|XP_003296758.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1] gi|311330967|gb|EFQ95153.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1] Length = 506 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 266/422 (63%), Positives = 325/422 (77%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L + G W +IL KG +WII+E+KASGLRGRGGAGF Sbjct: 57 LKDQDRIFQNLYGHHGADLKSAQKYGDWHKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 117 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 176 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 177 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 236 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+ Sbjct: 237 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 296 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL++ISGHVN PC VEE MSI +LIEKHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 297 GTKLYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 356 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W Sbjct: 357 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 416 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Sbjct: 417 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 476 Query: 418 QY 419 Y Sbjct: 477 DY 478 >gi|332024708|gb|EGI64897.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Acromyrmex echinatior] Length = 470 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 264/421 (62%), Positives = 325/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +MSRG W +I++KG DWIINE+K SGLRGRGGAGF Sbjct: 45 LADEDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIDKGADWIINEIKISGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD DI V GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+++ Sbjct: 405 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMNEQK 464 Query: 421 R 421 R Sbjct: 465 R 465 >gi|156042201|ref|XP_001587658.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Sclerotinia sclerotiorum 1980] gi|154696034|gb|EDN95772.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Sclerotinia sclerotiorum 1980 UF-70] Length = 508 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/426 (63%), Positives = 322/426 (75%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L+ + G W IL KG DWII+E+KASGLRGRGGAGF Sbjct: 59 LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 118 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM ++P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ Sbjct: 119 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 178 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 179 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 238 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+IAV PTI RRG W++ FGRE N Sbjct: 239 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 298 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 299 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKNV 358 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 359 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 418 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 419 TEQIMQRFEKGQGKIREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 478 Query: 418 QYHRCN 423 Y N Sbjct: 479 DYAEKN 484 >gi|322791265|gb|EFZ15789.1| hypothetical protein SINV_06284 [Solenopsis invicta] Length = 469 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 266/423 (62%), Positives = 322/423 (76%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +MSRG W +I+EKG DWIINE+K SGLRGRGGAGF Sbjct: 44 LADQDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIEKGADWIINEIKVSGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 104 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + Q A+ E Y +GL+G N+ GYD DI V GAGAYICGEETAL+E Sbjct: 164 YIYIRGEFYNEASNTQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 223 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR +W++ FGR N GTK Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNTGTK 283 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 284 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 343 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLMSFYKHESCGQCTPCREGISWMHK 403 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ + Sbjct: 404 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKEQK 463 Query: 421 RCN 423 R Sbjct: 464 RAT 466 >gi|154332191|ref|XP_001561912.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059233|emb|CAM36932.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] Length = 481 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 271/424 (63%), Positives = 327/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G ++ + RG W IL KG DW++NE+KASGLRGRGGAGF Sbjct: 20 LRDQDRIFTNLYEDFGTGINAAERRGDWYRTKDILLKGHDWVVNEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKLVEGALVAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E S+ A+ E Y G LG N+ G+D D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRSVDKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLFCISGHVNRPCTVEEEMSIPLQELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERID++ Sbjct: 380 KMMKRFVHGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIDRF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|219112977|ref|XP_002186072.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582922|gb|ACI65542.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 493 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 272/430 (63%), Positives = 332/430 (77%), Gaps = 5/430 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L+DQDRIFTNLYG Q L D++ RG + +I+ G DWII E+K SGLRGRGGAGF Sbjct: 38 FLSDQDRIFTNLYGEQDWRLPDAIKRGDYHLTKEIMCMGPDWIIQEIKDSGLRGRGGAGF 97 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH LIEGC++A +A+ A Sbjct: 98 PSGLKWSFMPKETDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCILAGYAMRARA 157 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+ E L A+ E YA+GLLG N+ GYD DI +H GAGAYICGEETAL+ Sbjct: 158 AYIYIRGEYFNEAVVLDEAIHEAYAAGLLGKNACGSGYDYDIYLHRGAGAYICGEETALI 217 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++ FG ENNRGT Sbjct: 218 ESLEGKQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVAPTILRRGASWFASFGNENNRGT 277 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHV P VEESMSI +LI+KHCGG+R GW+++ A IPGGSSVP L Q Sbjct: 278 KLFAISGHVKNPMVVEESMSIPLRDLIDKHCGGMRNGWESVQACIPGGSSVPVLNKDQCG 337 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+M++D L+ GSGLGTAAV + D + D++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 338 EALMEFDDLRAKGSGLGTAAVTMFDNTVDMVGAIRRLSHFYKHESCGQCTPCREGTGWLE 397 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+ IE+RID Sbjct: 398 DILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRIDNP 457 Query: 420 ----HRCNFQ 425 H FQ Sbjct: 458 KGFDHEAAFQ 467 >gi|50424275|ref|XP_460724.1| DEHA2F08360p [Debaryomyces hansenii CBS767] gi|49656393|emb|CAG89064.1| DEHA2F08360p [Debaryomyces hansenii] Length = 487 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+Y G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 32 LKDQDRIFQNVYNKYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 92 SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 151 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 152 TAAYIYIRGEFYNEAVILQQAINEAYKEGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 211 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG W++ FGR+NN Sbjct: 212 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRKNNT 271 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIPGG SVP +P Sbjct: 272 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGCSVPVMPKSV 331 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 MDYD L+++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W Sbjct: 332 CDDIAMDYDALRDVGSGLGTAAVIVMNKETDMIRAIQRFAAFYKHESCGQCTPCREGTTW 391 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++M+R VKG A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRPL+ +RI Sbjct: 392 LQKMMDRFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPLMVDRIK 451 Query: 418 QYHR 421 QY + Sbjct: 452 QYEQ 455 >gi|196010577|ref|XP_002115153.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190582536|gb|EDV22609.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 442 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/434 (61%), Positives = 331/434 (76%), Gaps = 12/434 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D+DRIFTNLYG L ++SRG W +IL KG +WI+NEVK SGLRGRGGAGF Sbjct: 1 IKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGHEWILNEVKKSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A ++GA A Sbjct: 61 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 120 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A++E Y +GL+G N+ GYD DI +H GAGAYICGEETAL+E Sbjct: 121 YIYIRGEFYNEASNMQIAINEAYKAGLIGKNACSSGYDFDIFMHRGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG W++ FGRE N GTK Sbjct: 181 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPAICRRGGDWFASFGRERNSGTK 240 Query: 241 -----------LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 LF ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLL +IPGGSS Sbjct: 241 ASLIIIFGYFDLFCISGHVNAPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLGIIPGGSS 300 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 VP +P +MD+D L+++ SGLGTAAVIVM++ +D+IK I RL FYKHESCGQCT Sbjct: 301 VPVIPRRICDDVLMDFDALQQVQSGLGTAAVIVMNKQSDMIKCISRLMDFYKHESCGQCT 360 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 PCREGTGW+ ++M R V+G A EID++ E+S+ IEG TICALGDAAAWP+QGL+++FR Sbjct: 361 PCREGTGWLAKIMARFVEGNADPEEIDMIEELSRQIEGHTICALGDAAAWPVQGLVRHFR 420 Query: 410 PLIEERIDQYHRCN 423 + ERI+QY N Sbjct: 421 HEMLERIEQYKAKN 434 >gi|242019360|ref|XP_002430129.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus humanus corporis] gi|212515220|gb|EEB17391.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus humanus corporis] Length = 472 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 265/418 (63%), Positives = 323/418 (77%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L + RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 45 LCDDDRIFTNLYGRHDWRLCGAYKRGDWYKTKEILHKGPDWIINEIKISGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+I+R++PH LIEGC++A A+GA A Sbjct: 105 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREILRNDPHKLIEGCLVAGRAMGAQAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++G++GCPTTV+NVE++AV PTI RRG SW++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADIGVFGCPTTVSNVETVAVAPTICRRGGSWFASFGRPRNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELI+ H G + GGWDNLLA+IPGGSS P +P Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIQLHAGDVIGGWDNLLAIIPGGSSTPLIPKDVCEE 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DGL + + LGTAAVIVM++ TDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 AIMDFDGLVAVQTSLGTAAVIVMNKQTDIVKAIARLIEFYKHESCGQCTPCREGINWMNK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ R + G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R++ Sbjct: 405 IIHRFITGNAEPGEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMEN 462 >gi|312221816|emb|CBY01756.1| similar to NADH-ubiquinone oxidoreductase 51 kDa subunit [Leptosphaeria maculans] Length = 508 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 265/422 (62%), Positives = 324/422 (76%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +IL KG DWII+E+K SGLRGRGGAGF Sbjct: 59 LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKTSGLRGRGGAGFP 118 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 119 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 178 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E L+ A+ E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 179 TAAYIYIRGEFYHEAAVLERAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 238 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++ FGRE N+ Sbjct: 239 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFASFGRERNQ 298 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL++ISGHVN PC VEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 299 GTKLYAISGHVNKPCVVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 358 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W Sbjct: 359 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 418 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Sbjct: 419 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 478 Query: 418 QY 419 Y Sbjct: 479 DY 480 >gi|307174607|gb|EFN65028.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Camponotus floridanus] Length = 468 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 265/421 (62%), Positives = 324/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DR+FTNLYG L +MSRG W +IL+KG DWIINE+K SGLRGRGGAGF Sbjct: 44 LSDEDRVFTNLYGRHDWRLKGAMSRGDWYKTKEILDKGSDWIINEIKISGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 104 SGMKWSFMNKPADGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q AV E Y +GL+G NS GYD DI + GAGAYICGEETAL+E Sbjct: 164 YIYIRGEFYNEASNMQVAVAEAYQAGLIGKNSCGSGYDFDIFIVRGAGAYICGEETALIE 223 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 283 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELI++H GG+ GGWDNLL VIPGGSS P +P Sbjct: 284 LFNISGHVNNPCTVEEEMSIPLRELIDRHAGGVIGGWDNLLGVIPGGSSTPVIPKSACDT 343 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMFK 403 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ + Sbjct: 404 ILKRFVDGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARLKEQK 463 Query: 421 R 421 R Sbjct: 464 R 464 >gi|322825181|gb|EFZ30268.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 484 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 271/424 (63%), Positives = 325/424 (76%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G +++ + RG W IL KG DW+I E+KASGLRGRGGAGF Sbjct: 23 LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPKV D RP YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 83 SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGEF E S++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG W+S FGR+NN G Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVE+ MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M R V G A+K EI + +VSK +EGRTICAL AAAWP+QGL ++F P++EERI++Y Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442 Query: 420 HRCN 423 N Sbjct: 443 WEAN 446 >gi|312066286|ref|XP_003136198.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa] gi|307768633|gb|EFO27867.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa] Length = 468 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/419 (63%), Positives = 319/419 (76%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M G W ++L KG+DWII E+ ASG+RGRGGAGF Sbjct: 33 LRDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 92 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM + RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA A Sbjct: 93 TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 152 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A+ E Y +G +G NS GY D+ +H GAGAYICGEETAL+E Sbjct: 153 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFIHRGAGAYICGEETALIE 212 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA P I +RGA WYS FGRE N GTK Sbjct: 213 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAEWYSSFGRERNHGTK 272 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV PCTVEE MSI ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P Sbjct: 273 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 332 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L + +GLGTAAVIVM++ DI+K I RLS FY+HESCGQCTPCREGT W+ Sbjct: 333 VLMDYDALIAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 392 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IE TICALGDAAAWPIQGLI++FRP IE RI Y Sbjct: 393 VMWRFVKGQAKPSEIDSLWEISKQIEAHTICALGDAAAWPIQGLIRHFRPEIEHRISDY 451 >gi|58579167|ref|YP_197379.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Welgevonden] gi|58417793|emb|CAI26997.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str. Welgevonden] Length = 425 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 276/423 (65%), Positives = 325/423 (76%), Gaps = 2/423 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+D++FTNL G L + SRG W N+ IL G + II EVK SGLRGRGGAGF Sbjct: 1 MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK + +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA + ILRRG++W++ G+ENN G Sbjct: 181 LESLEGRKGNPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++M +LVKG A +IDLL +S IEG TICALGDAAAWP+QGLI++FR +IEERID Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420 Query: 419 YHR 421 R Sbjct: 421 CIR 423 >gi|57239209|ref|YP_180345.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Welgevonden] gi|57161288|emb|CAH58209.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str. Welgevonden] Length = 425 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 276/423 (65%), Positives = 325/423 (76%), Gaps = 2/423 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+D++FTNL G L + SRG W N+ IL G + II EVK SGLRGRGGAGF Sbjct: 1 MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK + +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA + ILRRG++W++ G+ENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++M +LVKG A +IDLL +S IEG TICALGDAAAWP+QGLI++FR +IEERID Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420 Query: 419 YHR 421 R Sbjct: 421 CIR 423 >gi|323508270|emb|CBQ68141.1| probable NADH2 dehydrogenase (ubiquinone) flavoprotein 1 [Sporisorium reilianum] Length = 508 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 265/426 (62%), Positives = 325/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N Y L + +RG W IL KG DWII+++K SG+RGRGGAGF Sbjct: 49 LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 108 Query: 62 TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 109 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 168 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IYVRGEF E LQ A+ E YA GL+G N+ GYD D+ VH GAGAYICGEETA Sbjct: 169 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 228 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A PTI+RRG +W++GFGR+ N+ Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPAWFAGFGRDKNQ 288 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF+ISGHVN PC VEE MSI ELIE+HCGG+RGGWDNLL ++PGGSSVP LP + Sbjct: 289 GTKLFAISGHVNTPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 348 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D L+E S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W Sbjct: 349 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 408 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +MER +G REID++ E++K +EG TICAL DAAAWPIQGL++ FRP IEER+ Sbjct: 409 LANMMERFEEGRGNLREIDMIQELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 468 Query: 418 QYHRCN 423 Y N Sbjct: 469 LYQEKN 474 >gi|154298519|ref|XP_001549682.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia fuckeliana B05.10] gi|150858040|gb|EDN33232.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia fuckeliana B05.10] Length = 509 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/426 (63%), Positives = 321/426 (75%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L+ + G W IL KG DWII+E+KASGLRGRGGAGF Sbjct: 60 LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM ++P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ Sbjct: 120 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 179 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 180 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 239 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG W++ FGRE N Sbjct: 240 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 299 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 300 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKDV 359 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 360 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 419 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 420 TEQIMKRFEKGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 479 Query: 418 QYHRCN 423 Y N Sbjct: 480 DYAEKN 485 >gi|254456627|ref|ZP_05070056.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083629|gb|EDZ61055.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 443 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 261/416 (62%), Positives = 323/416 (77%), Gaps = 1/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLY G L+ S RG W N ++ +KGRDWIINE+K+S LRGRGGAGF Sbjct: 1 MLKDKDRIFQNLYNDLGSDLNSSQKRGDWVNTKELTDKGRDWIINEIKSSELRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF PK RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFAPKEVGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ + + LQAA+DE Y L+G N+ G+D+DI +H+GAGAYICGEETALL Sbjct: 121 CYIYIRGEYFIDGQKLQAAIDEAYKKKLIGKNAAGTGWDLDIYIHYGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILRRG W+S GRE N GT Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRRGGKWFSSLGRERNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISG+VN PC VEE M+I ELIE H GG+ GGWDNL AVIPGGSS+P +P + Sbjct: 241 KIFCISGNVNNPCNVEEEMNIPLKELIEVHAGGVIGGWDNLQAVIPGGSSMPLIPKKKCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L SGLGTA ++V+++ DIIK + R++ FYKHESCGQCTPCREG+GWM Sbjct: 301 TLTMDFDSLMAEKSGLGTAGIVVINKDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R++ER+ KG A K EI++L +V+ I G TICA G+ ++WP+QGL+++F+ IEER Sbjct: 361 RMLERMAKGEATKDEIEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFKKEIEER 416 >gi|148284884|ref|YP_001248974.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str. Boryong] gi|146740323|emb|CAM80727.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Boryong] Length = 422 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 2/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +D+IFTNL G L+ + RG W ++ R+WII E+K+SGLRGRGGAGF Sbjct: 1 MLNIEDKIFTNLSGAMAVDLASAKKRGDWYTTKNLILNSREWIIEEIKSSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S++ YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA Sbjct: 61 PTGLKWSFMPK-NSEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E LQ A+ E Y + L+G N+ ++ ++ +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYGARLIGLNACGTDFNFNLYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPAN GLYGCPTT+NNVESIAVVPTILRRGA W++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPANTGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FSISGHVN PC +EE+M + LIEK+ GG+RGGWDNL A+IPGGSSVP +P Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D LK +GSGLGT +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TVEMDFDSLKAVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M RLV+G A +ID++ +V+K IEG TICALGDAAAWPIQGLIK+FR IE+RI + Sbjct: 360 RIMMRLVEGNASVSDIDMILDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419 Query: 420 H 420 + Sbjct: 420 N 420 >gi|71410619|ref|XP_807595.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70871631|gb|EAN85744.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 484 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/424 (63%), Positives = 325/424 (76%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G +++ + RG W IL KG DW+I E+KASGLRGRGGAGF Sbjct: 23 LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPKV D RP YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 83 SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGEF E S++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG W+S FGR+NN G Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVE+ MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE+ +GLGTAAVIVMD++TD+I AI R+S FY +ESCGQCTPCREG+ W+ Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKTTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M R V G A+K EI + +VSK +EGRTICAL AAAWP+QGL ++F P++EERI++Y Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442 Query: 420 HRCN 423 N Sbjct: 443 WEAN 446 >gi|169771479|ref|XP_001820209.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40] gi|238485950|ref|XP_002374213.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus flavus NRRL3357] gi|83768068|dbj|BAE58207.1| unnamed protein product [Aspergillus oryzae] gi|220699092|gb|EED55431.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus flavus NRRL3357] Length = 496 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 265/422 (62%), Positives = 329/422 (77%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LQDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGDDWLISELKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN P TVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLYCISGHVNNPVTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 347 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSSFYRHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E +I Sbjct: 407 TQQIMQRMETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEAKIR 466 Query: 418 QY 419 ++ Sbjct: 467 EH 468 >gi|58617220|ref|YP_196419.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Gardel] gi|58416832|emb|CAI27945.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str. Gardel] Length = 425 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 276/423 (65%), Positives = 325/423 (76%), Gaps = 2/423 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+D++FTNL G L + SRG W N+ IL G + II EVK SGLRGRGGAGF Sbjct: 1 MLEDKDKVFTNLSGQGSPFLKAAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK + +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA + ILRRG++W++ G+ENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++M +LVKG A +IDLL +S IEG TICALGDAAAWP+QGLI++FR +IEERID Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420 Query: 419 YHR 421 R Sbjct: 421 CIR 423 >gi|116202325|ref|XP_001226974.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Chaetomium globosum CBS 148.51] gi|88177565|gb|EAQ85033.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Chaetomium globosum CBS 148.51] Length = 495 Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust. Identities = 264/421 (62%), Positives = 325/421 (77%), Gaps = 4/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWII EVKASGLRGRGGAGF Sbjct: 52 LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 111 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KW + ++P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A A Sbjct: 112 SGLKWDWDK---DNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNASAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEFI E LQ A++E YA GL+G N+ GYD D+ VH G GAY+CGEET+L+E Sbjct: 169 YIYIRGEFIEEAAVLQNAINEAYADGLIGKNACNSGYDFDVYVHRGGGAYVCGEETSLIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+GTK Sbjct: 229 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN P TVEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 289 LYCISGHVNNPATVEEEMSIPLRELIDKHCGGVRGGWDNLQAVIPGGSSTPILPKSVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W + Sbjct: 349 QLMDFDALKDSQSGLGTAAVIVMDKSADVVRAISRLSHFYRHESCGQCTPCREGSKWTEQ 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Q+ Sbjct: 409 IMQRFEKGLGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQQFA 468 Query: 421 R 421 + Sbjct: 469 K 469 >gi|260945745|ref|XP_002617170.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720] gi|238849024|gb|EEQ38488.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720] Length = 486 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 32 LKDSDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A + A Sbjct: 92 SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 151 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y SG LG N+ GYD D+ +H G GAYICGEETA Sbjct: 152 TAAYIYIRGEFYNETTILQNAINEAYKSGFLGKNACGSGYDFDVYIHRGMGAYICGEETA 211 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG W++ FGRE N Sbjct: 212 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNA 271 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI EL+EKHCGG+ GGWDNLL VIPGG SVP +P Sbjct: 272 GTKLYCISGHVNEPCTVEEEMSIPLKELLEKHCGGVIGGWDNLLGVIPGGCSVPVMPKDV 331 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 332 CDNVLMDYDALKDVGSGLGTAAVIVMNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTW 391 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++M+R VKG A ++EID ++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+ Sbjct: 392 LQKMMDRFVKGQATEKEIDQIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 451 Query: 418 QYHR 421 QY + Sbjct: 452 QYQK 455 >gi|241951346|ref|XP_002418395.1| NADH dehydrogenase complex I subunit, putative [Candida dubliniensis CD36] gi|223641734|emb|CAX43695.1| NADH dehydrogenase complex I subunit, putative [Candida dubliniensis CD36] Length = 491 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 35 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 95 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 155 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 214 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG W++ FGRE N Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 274 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI GGWDNLL VIPGGSSVP +P Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 334 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 335 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 394 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R G A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI Sbjct: 395 LQRMMDRFYTGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 454 Query: 418 QYHR 421 ++ + Sbjct: 455 EFQQ 458 >gi|302407582|ref|XP_003001626.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium albo-atrum VaMs.102] gi|261359347|gb|EEY21775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium albo-atrum VaMs.102] Length = 477 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 270/426 (63%), Positives = 326/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NL G +L+ + G W +IL KG +WII+EVKASGLRGRGGAGF Sbjct: 28 LKDSDRIFQNLNGRLPPTLASAKKMGDWHKTKEILAKGHEWIISEVKASGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 88 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 147 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y GL+G N+ GYD D+ VH GAGAY+CGEET+ Sbjct: 148 TAAYIYIRGEFYHEAAVLQTAINEAYKDGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 207 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+ Sbjct: 208 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 267 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 268 GTKLFCISGHVNNPVTVEEEMSIPLRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKDV 327 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W Sbjct: 328 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 387 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ Sbjct: 388 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMA 447 Query: 418 QYHRCN 423 +Y N Sbjct: 448 EYAAQN 453 >gi|39974413|ref|XP_368597.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] gi|145018439|gb|EDK02718.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] Length = 497 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 269/422 (63%), Positives = 322/422 (76%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWII E+KASGLRGRGGAGF Sbjct: 48 LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEIKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 108 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 167 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 168 TAAYIYIRGEFYHEAAVLQGAINEAYADGLIGKNACGSGYDFDVFVHRGGGAYVCGEETS 227 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+ Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 287 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISG VN PCTVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 288 GTKLFCISGQVNNPCTVEEEMSIPMRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 347 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSADVVRAIARLSHFYRHESCGQCTPCREGSKW 407 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R G + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E+R+ Sbjct: 408 TEQIMHRFEHGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEKRMA 467 Query: 418 QY 419 + Sbjct: 468 DF 469 >gi|71402029|ref|XP_803973.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70866690|gb|EAN82122.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 484 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 269/424 (63%), Positives = 323/424 (76%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G ++ + RG W +L KG DW+I E+KASGLRGRGGAGF Sbjct: 23 LKDQDRIFLNLYNDFGTDITSAERRGDWYRTKDLLLKGHDWVIAEMKASGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPKV D RP YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 83 SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGEF E S++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG G+PRLKPPFPANVGLYGCPTTV N E+++V PTILRRG W+S FGR+NN G Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNAETVSVSPTILRRGPQWFSSFGRKNNAGV 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVE+ MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M R V G A+K EI + +VSK +EGRTICAL AAAWP+QGL ++F P++EERI++Y Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442 Query: 420 HRCN 423 N Sbjct: 443 WEAN 446 >gi|189191100|ref|XP_001931889.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973495|gb|EDU40994.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 500 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 263/419 (62%), Positives = 322/419 (76%), Gaps = 4/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L + G W +IL KG +WII+E+KASGLRGRGGAGF Sbjct: 57 LKDQDRIFQNLYGHHGADLKSAQKYGDWYKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KW + +P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A A Sbjct: 117 SGLKWDWDK---DSKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNATAA 173 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAY+CGEET+L+E Sbjct: 174 YIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETSLIE 233 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+GTK Sbjct: 234 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQGTK 293 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PC VEE MSI +LIEKHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 294 LYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHICDD 353 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W + Sbjct: 354 QLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKWTHQ 413 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Y Sbjct: 414 IMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIKDY 472 >gi|221105450|ref|XP_002162472.1| PREDICTED: similar to GF15407 [Hydra magnipapillata] Length = 470 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/425 (62%), Positives = 327/425 (76%), Gaps = 2/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L + +RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 40 LSDDDRIFTNLYGRHDWKLKGAQARGDWYKTKEIILKGHDWILNEIKTSGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 100 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 159 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 160 YIYIRGEFYNEASNMQVAIQEAYKAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 219 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG SW++ GR N G K Sbjct: 220 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPEICRRGGSWFASMGRPRNSGQK 279 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MSI ELIE+H GG+ GGWDNLL +IPGGSS P +P Sbjct: 280 LFNISGHVNHPCTVEEEMSIPLKELIERHAGGVLGGWDNLLCIIPGGSSTPLIPKKVCED 339 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAA+IVM++ +D+++ I RL FYKHESCGQCTPCREG GWM Sbjct: 340 VLMDFDDLIRAQTGLGTAAIIVMNKQSDVVRCIARLIEFYKHESCGQCTPCREGVGWMNN 399 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRPL+EER QY Sbjct: 400 IMKRFVDGKAKSAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLLEERFAQY- 458 Query: 421 RCNFQ 425 + NF Sbjct: 459 QSNFN 463 >gi|156396709|ref|XP_001637535.1| predicted protein [Nematostella vectensis] gi|156224648|gb|EDO45472.1| predicted protein [Nematostella vectensis] Length = 477 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 258/419 (61%), Positives = 323/419 (77%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +I+ KG +WI+ E+ SGLRGRGGAGF Sbjct: 46 LKDEDRIFTNLYGRHDWKLKGAISRGDWYKTKEIILKGPEWILKEITTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A ++GA A Sbjct: 106 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGASMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A++E Y GL+G N+ G+D D+ +H GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEASNMQVAINEAYKKGLIGKNACGSGFDFDVYMHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W+SGFGR N GTK Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGEWFSGFGRPRNTGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ +LIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 286 LFNISGHVNNPCTVEEEMSVPLKDLIERHAGGVIGGWDNLLGVIPGGSSTPLIPLSVCDD 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IV ++ D+IK I RL FYKHESCGQCTPCREG WM++ Sbjct: 346 VLMDFDALVQAQTGLGTAALIVFNKQADVIKGIARLIEFYKHESCGQCTPCREGCNWMLK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R +G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI+++RP IE+R+ ++ Sbjct: 406 IMNRFTEGNAKTSEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHYRPEIEQRMKEF 464 >gi|68486372|ref|XP_712921.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|68486437|ref|XP_712889.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|46434308|gb|EAK93721.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|46434343|gb|EAK93755.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|238882235|gb|EEQ45873.1| NADH-quinone oxidoreductase chain F [Candida albicans WO-1] Length = 490 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/424 (62%), Positives = 326/424 (76%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 34 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 94 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 153 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEETA Sbjct: 154 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYICGEETA 213 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG W++ FGRE N Sbjct: 214 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNA 273 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI GGWDNLL VIPGGSSVP +P Sbjct: 274 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 333 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 334 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 393 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R G A ++EID ++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI Sbjct: 394 LQRMMDRFYTGQATEKEIDQIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 453 Query: 418 QYHR 421 ++ + Sbjct: 454 EFQQ 457 >gi|149245198|ref|XP_001527133.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus NRRL YB-4239] gi|146449527|gb|EDK43783.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus NRRL YB-4239] Length = 491 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 35 LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 95 SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAY+CGEETA Sbjct: 155 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYVCGEETA 214 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG W+ GRE N Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGEWFDSLGRERNS 274 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI+GGWDNLL VIPGGSSVP +P Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPVMPKET 334 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R + FYKHESCGQCTPCREGT W Sbjct: 335 CDTVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFAHFYKHESCGQCTPCREGTTW 394 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R G A +REID+++E++K IEG TICALGDAAAWPIQGLIK+F+P++ +RI+ Sbjct: 395 LQRMMDRFQTGQATEREIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFKPVMIDRIN 454 Query: 418 QYHR 421 +Y + Sbjct: 455 EYQK 458 >gi|320166203|gb|EFW43102.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit [Capsaspora owczarzaki ATCC 30864] Length = 480 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/421 (63%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG + +++RG W +IL KG DWI+NEVK SGLRGRGGAGF Sbjct: 39 LKDSDRIFTNLYGRHDWGIKGALARGDWYKTKEILLKGHDWILNEVKKSGLRGRGGAGFP 98 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 99 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 158 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 159 YIYIRGEFYNEASNMQVAIHEAYKAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 218 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR W++ FGRE N+GTK Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRTGEWFASFGRERNQGTK 278 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN P TVEE MSI ELIE+H GG+ GGWDNLLA+IPGG+SVP LP Sbjct: 279 LFCISGQVNTPVTVEEEMSIPLKELIERHAGGVIGGWDNLLAIIPGGASVPLLPRKICDD 338 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+++ SGLGTAAVIVM++ +D+I+ I RLS FYKHESCGQCTPCREG GW+ + Sbjct: 339 VLMDFDALRDVTSGLGTAAVIVMNKQSDVIRCISRLSDFYKHESCGQCTPCREGVGWLAK 398 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R V G A+ EID++ E+++ IEG TICALGDAAAWP+QGLI++FRP IE RI + Sbjct: 399 IMKRFVDGNAKPAEIDMIEELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIESRIATFQ 458 Query: 421 R 421 + Sbjct: 459 Q 459 >gi|157864056|ref|XP_001687575.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major strain Friedlin] gi|68223786|emb|CAJ02018.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania major strain Friedlin] Length = 481 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G + + RG W IL KG DW+INE+KASGLRGRGGAGF Sbjct: 20 LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E S++ A+ E Y G LG N+ G+D D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MS+ EL+E+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++ Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|50547327|ref|XP_501133.1| YALI0B20372p [Yarrowia lipolytica] gi|7684614|gb|AAF65194.2|AF197536_1 nucleotide-binding respiratory complex I subunit [Yarrowia lipolytica] gi|6689650|emb|CAB65520.1| NUBM protein [Yarrowia lipolytica] gi|49646999|emb|CAG83386.1| YALI0B20372p [Yarrowia lipolytica] Length = 488 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 262/423 (61%), Positives = 328/423 (77%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G L+ + +G W +++ KG WII+E+K SGLRGRGGAGF Sbjct: 34 LKDQDRIFQNLYDNYGWDLASARKQGDWYKTKELILKGDTWIIDEIKKSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 94 SGLKWSFMNPPGWEKNEGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNA 153 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G ++ GYD D+ +H G GAY+CGEET+ Sbjct: 154 TAAYIYIRGEFYNEAAVLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETS 213 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG W++ FGRE N Sbjct: 214 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNS 273 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISG+VN PCTVEE MSI EL+EKHCGGI+GGWDNLL VIPGG SVP LP Sbjct: 274 GTKLFCISGNVNEPCTVEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNI 333 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK++ SGLGTAAVIV+++ D+I+AI R + FYKHESCGQCTPCREGT W Sbjct: 334 CEDVLMDFDALKDVQSGLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTW 393 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++ M+R G A++REID+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ Sbjct: 394 LLKAMDRFRTGQAKEREIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMK 453 Query: 418 QYH 420 ++H Sbjct: 454 KFH 456 >gi|146077013|ref|XP_001463061.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] gi|134067143|emb|CAM65408.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] gi|322496491|emb|CBZ31561.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 481 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G + + RG W IL KG DW+INE+KASGLRGRGGAGF Sbjct: 20 LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E S++ A+ E Y G LG N+ G++ D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWNFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MS+ ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++ Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|261327930|emb|CBH10907.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma brucei gambiense DAL972] Length = 496 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/424 (62%), Positives = 322/424 (75%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G + + RG W +L KG DW+INE+KASGLRGRGGAGF Sbjct: 35 LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 95 SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVEE MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LKE +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+ E+ + +VSK +EGRTICAL AAAWP+QGL ++F PL+EERI++Y Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLEERIEKY 454 Query: 420 HRCN 423 N Sbjct: 455 WEAN 458 >gi|262277296|ref|ZP_06055089.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium HIMB114] gi|262224399|gb|EEY74858.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium HIMB114] Length = 427 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 263/417 (63%), Positives = 328/417 (78%), Gaps = 2/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIF NLYG + +LS++++RG W + +I+ KG++WII++VK S LRGRGGAGF Sbjct: 1 MLKDTDRIFRNLYGDESFNLSNALNRGDWKDTKEIIAKGKEWIIDQVKKSELRGRGGAGF 60 Query: 61 STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSF PK +DRPHYLV+NADESEPGTCKDRDI+R+EP LIEG +IA++A+GA Sbjct: 61 PTGMKWSFAPKEPTADRPHYLVINADESEPGTCKDRDILRYEPQKLIEGSLIAAYAVGAK 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 ++Y+RGE++ E + LQ A+DE Y L+G N+ G+D D+ +H GAGAYICGEETAL Sbjct: 121 TCYVYIRGEYVNEGKVLQQAIDEAYEKNLIGKNAAGSGWDFDMYIHFGAGAYICGEETAL 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG KGQPRLKPPFPA VGLYGCPT VNNVE+IAVVPTILRRG W++ FGR NRG Sbjct: 181 LESLEGNKGQPRLKPPFPALVGLYGCPTIVNNVETIAVVPTILRRGPEWFASFGRPKNRG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISG+V PC VEE MSI ELIE H GG+ GGW NL AVIPGGSS+P LP Sbjct: 241 TKIFCISGNVVNPCNVEEEMSIPLKELIETHAGGVIGGWGNLQAVIPGGSSMPLLPKKVC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +MD+D L E SG+GTA ++V+D+S DI+ I R+S FYKHESCGQCTPCREG+GW+ Sbjct: 301 DNILMDFDALVEAKSGMGTAGIVVIDKSQDIVSCISRISRFYKHESCGQCTPCREGSGWL 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+MER+ +G A+ EID+L EV+K IEG TICA G+A+AWP+QGL+++FR +EE+ Sbjct: 361 WRMMERINRGEAEIHEIDMLLEVTKQIEGHTICAFGEASAWPVQGLLRHFREQMEEK 417 >gi|322488209|emb|CBZ23455.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 481 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 267/424 (62%), Positives = 328/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G + + RG W IL KG DW+INE+KASGLRGRGGAGF Sbjct: 20 LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E +++ A+ E YA G LG ++ G+D D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRAVEKAIHEAYAKGYLGKSACGSGWDFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASLEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PCTVEE MS+ ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLYCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD++TD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKTTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERI+++ Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIERF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|68171485|ref|ZP_00544869.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88658598|ref|YP_507360.1| NADH dehydrogenase I subunit F [Ehrlichia chaffeensis str. Arkansas] gi|67999091|gb|EAM85758.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88600055|gb|ABD45524.1| NADH dehydrogenase I, F subunit [Ehrlichia chaffeensis str. Arkansas] Length = 427 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/422 (63%), Positives = 324/422 (76%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D D++FTNL G L + SRG W N+ +IL G + II E+K SGLRGRGGAGF Sbjct: 1 MLKDSDKVFTNLSGQYSPFLRSAKSRGIWSNILEILNLGPEHIIQEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK + +P YL++NADESEPGTCKDRDI+R++PH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLIINADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A++E Y + L+G N+ GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLVLSKALEEAYKAKLIGKNACNSGYDLDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V I+RRG+ W++ GRENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGRENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTVNMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+M+++VKG A IDLL ++ +EG TICALGDAAAWPIQGLI++FR +IE+RI Sbjct: 361 WRIMKKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRNVIEDRIRD 420 Query: 419 YH 420 Y+ Sbjct: 421 YN 422 >gi|145488753|ref|XP_001430380.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397477|emb|CAK62982.1| unnamed protein product [Paramecium tetraurelia] Length = 462 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 328/421 (77%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 23 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D RP YLV+NADESEPGTCKDR+I+RH+PH L+EG + FA+ A Sbjct: 83 SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+ Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCE 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+++R IEERI+ Y Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRSYREEIEERIEDY 442 Query: 420 H 420 H Sbjct: 443 H 443 >gi|254693013|gb|ACT79356.1| MIP04331p [Drosophila melanogaster] Length = 704 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M RG W +I+ KG WI+NE+K SGLRGRGGAGF Sbjct: 260 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 319 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ Sbjct: 320 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 379 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGEF E +LQ A+ E Y +G LG N+ G+D D+ V GAGAYICGEET+L+E Sbjct: 380 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 439 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 440 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 499 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MS+ ELIE+H GG+ GGWDNLLA+IPGGSS PC+ Sbjct: 500 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 559 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI DYDGL + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG W+ Sbjct: 560 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 619 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R V G AQ EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI + Sbjct: 620 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 677 >gi|45550452|ref|NP_611238.2| CG11423 [Drosophila melanogaster] gi|45445490|gb|AAF57825.3| CG11423 [Drosophila melanogaster] Length = 702 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M RG W +I+ KG WI+NE+K SGLRGRGGAGF Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGEF E +LQ A+ E Y +G LG N+ G+D D+ V GAGAYICGEET+L+E Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MS+ ELIE+H GG+ GGWDNLLA+IPGGSS PC+ Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI DYDGL + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG W+ Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R V G AQ EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI + Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675 >gi|145498931|ref|XP_001435452.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402584|emb|CAK68055.1| unnamed protein product [Paramecium tetraurelia] Length = 462 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 328/421 (77%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 23 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D RP YLV+NADESEPGTCKDR+I+RH+PH L+EG + FA+ A Sbjct: 83 SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+ Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+++R IEERI+ Y Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRSYREEIEERIEDY 442 Query: 420 H 420 H Sbjct: 443 H 443 >gi|54650938|gb|AAV37047.1| AT08270p [Drosophila melanogaster] Length = 702 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M RG W +I+ KG WI+NE+K SGLRGRGGAGF Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGEF E +LQ A+ E Y +G LG N+ G+D D+ V GAGAYICGEET+L+E Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MS+ ELIE+H GG+ GGWDNLLA+IPGGSS PC+ Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI DYDGL + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG W+ Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R V G AQ EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI + Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675 >gi|72388848|ref|XP_844719.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei TREU927] gi|62176128|gb|AAX70246.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei] gi|70801253|gb|AAZ11160.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 496 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 266/424 (62%), Positives = 322/424 (75%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G + + RG W +L KG DW+INE+KASGLRGRGGAGF Sbjct: 35 LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 95 SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVEE MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LKE +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+ E+ + +VSK +EGRTICAL AAAWP+QGL ++F PL++ERI++Y Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454 Query: 420 HRCN 423 N Sbjct: 455 WEAN 458 >gi|126135420|ref|XP_001384234.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces stipitis CBS 6054] gi|126091432|gb|ABN66205.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces stipitis CBS 6054] Length = 484 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 263/426 (61%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+YG G L SM G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 31 LKDTDRIFQNIYGKYGHDLKSSMKMGDWHKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A + A Sbjct: 91 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 150 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +G LG N+ GYD DI +H G GAY+CGEETA Sbjct: 151 TAAYIYIRGEFYNEAVILQNAINEAYKAGFLGKNACGSGYDFDIYIHRGMGAYVCGEETA 210 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG W++ FGRE N+ Sbjct: 211 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNQ 270 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G KLF ISGHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIPGGSSVP + Sbjct: 271 GVKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPIMTKET 330 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+ I R S FYKHESCGQCTPCREGT W Sbjct: 331 CDNILMDYDALRDVGSGLGTAAVIVMNKQTDIIRGIQRFSHFYKHESCGQCTPCREGTTW 390 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R +G A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+ Sbjct: 391 LQRMMDRFQEGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 450 Query: 418 QYHRCN 423 ++ + N Sbjct: 451 EFKKKN 456 >gi|188593015|emb|CAQ55523.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei TREU927] Length = 496 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 266/424 (62%), Positives = 322/424 (75%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G + + RG W +L KG DW+INE+KASGLRGRGGAGF Sbjct: 35 LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 95 SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVEE MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LKE +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+ E+ + +VSK +EGRTICAL AAAWP+QGL ++F PL++ERI++Y Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454 Query: 420 HRCN 423 N Sbjct: 455 WEAN 458 >gi|145538866|ref|XP_001455133.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422921|emb|CAK87736.1| unnamed protein product [Paramecium tetraurelia] Length = 463 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 328/421 (77%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 24 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 83 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D RP YLV+NADESEPGTCKDR+I+RH+PH L+EG + FA+ A Sbjct: 84 SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 143 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+ Sbjct: 144 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 203 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT Sbjct: 204 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 263 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 264 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 323 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 324 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 383 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+++R IEERI+ Y Sbjct: 384 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRSYREEIEERIEDY 443 Query: 420 H 420 H Sbjct: 444 H 444 >gi|330813987|ref|YP_004358226.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp. IMCC9063] gi|327487082|gb|AEA81487.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp. IMCC9063] Length = 430 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 263/424 (62%), Positives = 330/424 (77%), Gaps = 4/424 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D++RIF NLYG + SL + RG W + +I+ KG+DWII EVK S LRGRGGAGF Sbjct: 1 MLEDKNRIFKNLYGDESFSLPAAEVRGDWKDTKEIISKGKDWIIEEVKKSELRGRGGAGF 60 Query: 61 STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSF PK V RPHYLV+NADESEPGTCKDRDI+R+EPH LIEGC+IA++A+ A+ Sbjct: 61 PTGVKWSFAPKEVKEGRPHYLVINADESEPGTCKDRDILRYEPHKLIEGCLIAAYAVSAN 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 ++Y+RGE++ E + LQ A++E Y G LG N+ G+D+DI +H+GAGAYICGEETAL Sbjct: 121 ICYVYIRGEYVNEGKVLQEAINEAYEKGYLGKNAAGTGWDLDIFIHYGAGAYICGEETAL 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG KGQPRLKPPFPA +GLYGCPT VNNVE++AVVPTIL+RG+ W++ FGR NRG Sbjct: 181 LESLEGNKGQPRLKPPFPALIGLYGCPTIVNNVETVAVVPTILKRGSEWFASFGRVKNRG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISG+VN PC VEE M I LIEKH GG+ GGWDNL AVIPGGSS+P LP Sbjct: 241 TKIFCISGNVNNPCNVEEEMGIPLKVLIEKHAGGVIGGWDNLQAVIPGGSSMPLLPKNIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L E SGLGTA ++V+D+S DI+K + R++ FYKHESCGQCTPCREGTGWM Sbjct: 301 ETINMDFDALIEAKSGLGTAGIVVIDKSQDIVKCMTRIARFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-- 416 R++ER+ +G + EID+L +V+K IEG TICA G+ ++WP+QGL+++FR +E + Sbjct: 361 WRMLERIGRGESNISEIDMLMDVTKQIEGHTICAFGEGSSWPVQGLLRHFRKEMEAKCNS 420 Query: 417 DQYH 420 DQYH Sbjct: 421 DQYH 424 >gi|197105262|ref|YP_002130639.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1] gi|196478682|gb|ACG78210.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1] Length = 437 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 261/419 (62%), Positives = 325/419 (77%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIF NLYGL L + +RG W+ I+ + +WI +++KASGLRGRGGAGF Sbjct: 4 ILADKDRIFLNLYGLHDWGLEGAKARGAWNGTKDIVAQSPEWICDQIKASGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+FMPK S+RPHYLVVNADESEPG CKDR+I+R++PH LIEGC+IA AI AH Sbjct: 64 PTGLKWTFMPKQESERPHYLVVNADESEPGACKDREILRNDPHLLIEGCLIACRAIRAHT 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE++ ERE L AA+ + Y + L+G + G+D D+ + HG GAYICG+ETAL+E Sbjct: 124 AYIYIRGEYVHERERLTAAIQQAYDAKLIGPGNIHGWDCDVRIQHGGGAYICGDETALME 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA G++G PTT+NNVESI+VV TILRRGA W++GFG E + GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGIWGAPTTINNVESISVVGTILRRGADWFAGFGTEKSTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ SGHVN PC VE+++ I +LIE+H GG+RGGW NL AVIPGG SV +PA + Sbjct: 244 LFAASGHVNKPCVVEDAVGIPVRQLIEEHFGGVRGGWGNLKAVIPGGISVRMIPAHEAEE 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+M Y+ L+ GSGLGT +IV D+ D++KAI R S FYKHESCGQCTPCREGTGWM R Sbjct: 304 AVMTYEDLQARGSGLGTGTMIVFDKDADLVKAIARASYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+V G A+ EIDLL +V+ +EG TIC LGDAAAWPIQGL ++FR +EERI Y Sbjct: 364 VMERMVTGEAEMSEIDLLLDVASQVEGHTICGLGDAAAWPIQGLFRHFRHEVEERITSY 422 >gi|51947511|gb|AAU14240.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus ovalis] Length = 474 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 256/420 (60%), Positives = 327/420 (77%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++DQDRIF+NLY Q ++ ++ RG W IL +D++I+E+K SGLRGRGGAGF Sbjct: 34 ISDQDRIFSNLYKDQDPFINGALKRGDWYRTKDILSCPQDFVIDEIKKSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMPK RP YLVVNADESEP TCKDR+IMRH+PH L+EG +I +A+ A A Sbjct: 94 SGLKYSFMPKKSDGRPSYLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRAKAA 153 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGEF E + L+ AV E Y G +G N+ GYD DI VH GAGAY+CGEET++L Sbjct: 154 YVYIRGEFWHEAQQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYVCGEETSMLS 213 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG G+PR+KPP+PA GLYGCPTTV NVE+++ VPTI+RRG SW++ FGR+NN GTK Sbjct: 214 SIEGVVGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGSWFASFGRKNNHGTK 273 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGH+N PCTVE+ MSI+ ELIE+H GG+RGGWDNLL VIPGGSS P + Sbjct: 274 LYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 333 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L E GS GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ Sbjct: 334 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 393 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ G A EID LYE++K IEG TICALG+AAAWP+QGLIK++RP++E+R+D+YH Sbjct: 394 MLERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRPVMEDRMDKYH 453 >gi|313238308|emb|CBY13392.1| unnamed protein product [Oikopleura dioica] gi|313246735|emb|CBY35608.1| unnamed protein product [Oikopleura dioica] Length = 458 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 270/423 (63%), Positives = 320/423 (75%), Gaps = 3/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + DQDRIFTNLYG S+ + +RG W +IL KG DWI E+K SGLRGRGGAGF Sbjct: 25 MKDQDRIFTNLYGFHDFSIKGAEARGDWYKTKEILLKGADWIQQEMKDSGLRGRGGAGFP 84 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFM +D RP YLVVNADE EPGTCKDRDIMRH+PH LIEGC++A +A+GA Sbjct: 85 TGLKWSFMNVPVTDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLIEGCLVAGYAMGATA 144 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IYVRGEF E +L AV E YA+G LG N+ GYD D+ V GAGAY+CGEETAL+ Sbjct: 145 AYIYVRGEFYNETSNLMYAVREAYAAGYLGQNACGTGYDFDVYVQRGAGAYVCGEETALI 204 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPA +G +GCPTTVNNVE+IAV PTI RRGA W+S FGRE N GT Sbjct: 205 ESLEGKQGKPRLKPPFPAAIGAFGCPTTVNNVETIAVAPTICRRGAEWFSSFGRERNTGT 264 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISG+VN PCTVEE+MSI ELIEKH GG+RGGWDNLLAVIPGGSS P LP Sbjct: 265 KLFNISGNVNTPCTVEETMSIPMRELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 324 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L SGLGTAA+IVM++ D ++ IWRL FYKHESCGQCTPCREG WM Sbjct: 325 DIMMDFDALAAAPSGLGTAALIVMNKDDDPVECIWRLMEFYKHESCGQCTPCREGVSWMN 384 Query: 360 RVMERLVKGIAQ-KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++R G ++ EI+ L+E+SK +EG TICAL D AAWP QGLI+ F+P +EER + Sbjct: 385 DILKRWTFGQSRGPEEIEQLWEISKQVEGNTICALADGAAWPAQGLIRWFKPYLEERFAE 444 Query: 419 YHR 421 R Sbjct: 445 DVR 447 >gi|301111442|ref|XP_002904800.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Phytophthora infestans T30-4] gi|262095130|gb|EEY53182.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Phytophthora infestans T30-4] Length = 498 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 265/418 (63%), Positives = 318/418 (76%), Gaps = 2/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG + ++ RG W +L G DWI+ E+K SGLRGRGGAGF Sbjct: 40 LKDEDRIFTNVYGEDTWRVDGAVRRGDWHRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH L+EGC+IA FA+ A A Sbjct: 100 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLIAGFAMRARAA 159 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGEF E LQ A+ E Y G LG N+ GYD D+ +H GAGAYICGEET LLE Sbjct: 160 YVYIRGEFFNEALILQEAIHEAYQRGFLGRNACGSGYDFDVYLHRGAGAYICGEETGLLE 219 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++ GR+NN GTK Sbjct: 220 SLEGRQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNHGTK 279 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIE+HCGG+RGGWDNL A IPGGSSVP L + Sbjct: 280 LFCISGHVNNPCTVEEEMSIPLRDLIERHCGGVRGGWDNLQACIPGGSSVPVLDEELCQD 339 Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LK+ GSGLGTAAV + D+S D++ AI R S FY HESCGQCTPCREGTGWM Sbjct: 340 IMMDYDDLKQRGGSGLGTAAVTIFDKSVDMVGAIRRYSHFYTHESCGQCTPCREGTGWME 399 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +V+ R+ G A+ EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+ + ERI+ Sbjct: 400 KVLTRMETGDAELEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKLVERIE 457 >gi|71083587|ref|YP_266306.1| NADH dehydrogenase I subunit F [Candidatus Pelagibacter ubique HTCC1062] gi|71062700|gb|AAZ21703.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique HTCC1062] Length = 443 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 256/416 (61%), Positives = 321/416 (77%), Gaps = 1/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLY +G + S +RG W + +I++KGR+WII EVK+S LRGRGGAGF Sbjct: 1 MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF PK RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ + + LQ A+DE Y L+G N S G+D+DI +H+GAGAYICGEETALL Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G W++ G+ N GT Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISG+VN PC VEE MSI+ ELIE H GG+ GGWDNL AVIPGGSS+P +P Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L SGLGTA ++V++ DIIK + R++ FYKHESCGQCTPCREG+GWM Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R++ER+ KG A K E+++L +V+ I G TICA G+ ++WP+QGL+++FR IEER Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEER 416 >gi|51947519|gb|AAU14244.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Euplotes sp. BB-2004] Length = 470 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 266/423 (62%), Positives = 321/423 (75%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY + ++ RG W I+ G DWII+++KASGLRGRGGAGF Sbjct: 32 LQDQDRIFTNLYRDGDPFIDGALKRGDWHKTKDIVLNGDDWIIDQIKASGLRGRGGAGFP 91 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMPKV RP YLV+NADESEPGTCKDR+IMRH+PH LIEG + ++ A A Sbjct: 92 SGLKYSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLIEGALCVGVSMRAKAA 151 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF + L+ A+ E Y GL+G N+ GYD D+ V HGAGAYICGEET L+E Sbjct: 152 YIYIRGEFWYQYNCLERAISEAYERGLIGKNACGTGYDFDVHVVHGAGAYICGEETGLIE 211 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PR+KPPFPAN GLYGCPTTV NVE++AV PTILRR W++ FGR+NN GTK Sbjct: 212 SLEGKQGKPRMKPPFPANAGLYGCPTTVTNVETVAVCPTILRRTPEWFASFGRKNNAGTK 271 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF++SGHVN P EE MSI ELIEKHCGG+ GGWDNL A+IPGGSSVP LP Sbjct: 272 LFAVSGHVNNPGVFEEEMSIPLRELIEKHCGGVTGGWDNLKAIIPGGSSVPLLPKRICDD 331 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+++ SGLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREGT WM Sbjct: 332 VLMDFDALRDVRSGLGTAAVIVMDKSTDVIAAIHRLSKFYAHESCGQCTPCREGTSWMED 391 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ KG A EID+L E+S IEG TICALGDAAAWP+QGLI++FR +E+RI+ Y Sbjct: 392 MLGRMRKGNADFAEIDMLEELSYQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRIEDYK 451 Query: 421 RCN 423 N Sbjct: 452 AEN 454 >gi|325187212|emb|CCA21752.1| ubiquinone oxidoreductase putative [Albugo laibachii Nc14] Length = 502 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 267/418 (63%), Positives = 318/418 (76%), Gaps = 2/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG + + ++ RG W +L G +WII EVK SGLRGRGGAGF Sbjct: 45 LKDEDRIFTNLYGEKTWRIDGALKRGDWYRTKDLLCMGPEWIIQEVKDSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A FA+ A A Sbjct: 105 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLVAGFAMRARAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E L+ A+ E Y G LG NS GYD D+ +H GAGAYICGEET+LLE Sbjct: 165 YIYIRGEFFNEAVILEEAIHEAYQKGFLGVNSCGSGYDFDVYLHRGAGAYICGEETSLLE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++ GR+NN GTK Sbjct: 225 SLEGKQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGW NL A IPGGSSVP L + Sbjct: 285 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWGNLQACIPGGSSVPVLDEELCQD 344 Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK GSGLGTAAV + D+S D++ AI RL+ FY HESCGQCTPCREGTGWM Sbjct: 345 IMMDFDDLKNRGGSGLGTAAVTIFDKSVDMVAAIRRLAHFYTHESCGQCTPCREGTGWME 404 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ KG A EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+ I ERI+ Sbjct: 405 AILVKMEKGEADLEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKIIERIE 462 >gi|256072407|ref|XP_002572527.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni] gi|238657687|emb|CAZ28759.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1), putative [Schistosoma mansoni] Length = 413 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 257/397 (64%), Positives = 313/397 (78%), Gaps = 1/397 (0%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 M RGHW +I+ KG DWII E+K SGLRGRGGAGF +GMKWSFM K RP YLV+N Sbjct: 1 MQRGHWYKTKEIVLKGSDWIIEEIKKSGLRGRGGAGFPSGMKWSFMNKPSDGRPKYLVIN 60 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A+IY+RGEF E ++Q A+ E Sbjct: 61 ADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANAAYIYIRGEFYNEASNMQLAIKEA 120 Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 Y +G LG N+ G++ D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA++GL+ Sbjct: 121 YEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADIGLF 180 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 GCPTTV NVE++AV PTI RRG W++ FGRE NRGTKLF+ISGHVN PCTVEE MSI Sbjct: 181 GCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTKLFNISGHVNNPCTVEEEMSIPM 240 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +LIE+H GG+ GGWDNLLAVIPGGSS P LP +MD+D L + SGLGTAA+IV Sbjct: 241 RDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICSTVLMDFDALVQANSGLGTAALIV 300 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 M+RS D++ I RL FY+HESCGQCTPCREG W+ ++M R VKG A K EID+++E+S Sbjct: 301 MNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWLSQIMTRFVKGNANKDEIDMIWEIS 360 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 K +EGRTICAL D AAWP+QGLI++FRP +E R +Y Sbjct: 361 KQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKY 397 >gi|91761992|ref|ZP_01263957.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique HTCC1002] gi|91717794|gb|EAS84444.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique HTCC1002] Length = 443 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 254/416 (61%), Positives = 320/416 (76%), Gaps = 1/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLY +G + S +RG W + +I++KGR+WII EVK+S LRGRGGAGF Sbjct: 1 MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF PK RPHYLV+N DESEPGTCKDRDI+R EP LIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPQKLIEGCLIASYAVQAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ + + LQ A+DE Y L+G N S G+D+DI +H+GAGAYICGEETALL Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G W++ G+ N GT Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISG+VN PC VEE MSI+ ELIE H GG+ GGWDNL AVIPGGSS+P +P Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L SGLGTA ++V++ DIIK + R++ FYKHESCGQCTPCREG+GWM Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R++ER+ KG A K E+++L +V+ I G TICA G+ ++WP+QGL+++FR IE+R Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEKR 416 >gi|54792418|emb|CAH65683.1| NADH-quinone oxidoreductase [Nilaparvata lugens] Length = 462 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/416 (62%), Positives = 315/416 (75%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L ++ RG W +I+ KG D+IINEVKASGLRGRGGAGF Sbjct: 43 LNDSDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADFIINEVKASGLRGRGGAGFP 102 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YL VNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 103 SGLKWSFMNKPSDGRPKYLCVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 162 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ G+D D+ +H GAGAYICGEETAL+E Sbjct: 163 YIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGTGFDFDVYMHRGAGAYICGEETALIE 222 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 223 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNTGTK 282 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 283 LFNISGHVNRPCTVEEEMSVPLRELIERHAGGVRGGWDNLLAVIPGGSSTPLIPKRVCDD 342 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + GTAAVIVMD+STDIIKAI RL VFYKHESCGQCTPCREG WM + Sbjct: 343 VLMDFDALIAAETSFGTAAVIVMDKSTDIIKAIARLIVFYKHESCGQCTPCREGIAWMHK 402 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +M+R VKG A+ EID+L+E+SK + WP+QGLI++FRP IE R+ Sbjct: 403 MMQRFVKGDARPAEIDMLWEISKRLRDTLFARWVTGLRWPVQGLIRHFRPEIENRM 458 >gi|51947517|gb|AAU14243.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus ovalis] Length = 475 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 255/420 (60%), Positives = 321/420 (76%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++DQDRIF+NLY Q + ++ RG W IL D++I+E+K SGLRGRGGAGF Sbjct: 35 ISDQDRIFSNLYKDQDPFIDGALKRGDWYRTKDILACPHDFVIDEIKKSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMPK RP +LVVNADESEP TCKDR+IMRH+PH L+EG +I +A+ A A Sbjct: 95 SGLKYSFMPKKSDGRPSFLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGEF E L+ AV E Y G +G N+ GYD DI VH GAGAYICGEET++L Sbjct: 155 YVYIRGEFWDEAMQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYICGEETSMLS 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG G+PR+KPP+PA GLYGCPTTV NVE+++ VPTI+RRG W++ FGR+NN GTK Sbjct: 215 SIEGVIGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGGWFASFGRKNNHGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SGH+N PCTVE+ MSI+ ELIE+H GG+RGGWDNLL VIPGGSS P + Sbjct: 275 LYCLSGHINNPCTVEDEMSISLRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L E GS GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ Sbjct: 335 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ G A EID LYE++K IEG TICALG+AAAWP+QGLIK++R +IE+RID+YH Sbjct: 395 ILERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRDVIEDRIDKYH 454 >gi|312371261|gb|EFR19494.1| hypothetical protein AND_22330 [Anopheles darlingi] Length = 1009 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 255/386 (66%), Positives = 302/386 (78%), Gaps = 1/386 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 61 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEIKVSGLRGRGGAGFP 120 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 121 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGKAMGARAA 180 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 181 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 240 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG W++GFGR N GTK Sbjct: 241 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 300 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GGIRGGWDNLL +IPGGSS P +P Sbjct: 301 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 360 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG WM + Sbjct: 361 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 420 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIE 386 +M R V G A+ EID+L+E+SK IE Sbjct: 421 IMHRFVAGNARPSEIDMLWEISKQIE 446 >gi|56416878|ref|YP_153952.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. St. Maries] gi|222475243|ref|YP_002563659.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str. Florida] gi|255003227|ref|ZP_05278191.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Puerto Rico] gi|56388110|gb|AAV86697.1| NADH dehydrogenase chain F [Anaplasma marginale str. St. Maries] gi|222419380|gb|ACM49403.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str. Florida] Length = 430 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 265/417 (63%), Positives = 317/417 (76%), Gaps = 2/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +D FTNL G + L + RG WD +ILE G D II EVK SGLRGRGGAGF Sbjct: 1 MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KWSFMPK + RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G Sbjct: 61 TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L A+DE Y GL+G N+ GYD+DI +H GAGAYICGEE+A L Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV I+RRG+ W+S GR NN GT Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+M+++V G A+ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++E+RI Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRI 417 >gi|190571396|ref|YP_001975754.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018795|ref|ZP_03334603.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357668|emb|CAQ55112.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995746|gb|EEB56386.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 417 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/417 (63%), Positives = 320/417 (76%), Gaps = 3/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IF NL G + L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFINLNGKETPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK + YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPK--NPLKAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGRAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I+ ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KVFCISGHVNNPCNVEEELGISLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+M R+V G + E+D L +++ IEG TICALGDAAAWP+QGLI++FR +IEERI Sbjct: 359 RIMRRMVAGNIKPGEVDKLLDLTTQIEGHTICALGDAAAWPVQGLIRHFRHIIEERI 415 >gi|225630643|ref|YP_002727434.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi] gi|225592624|gb|ACN95643.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi] Length = 417 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G + L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A Sbjct: 61 STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSS P +P Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414 >gi|42520789|ref|NP_966704.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410529|gb|AAS14638.1| NADH dehydrogenase I, F subunit, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 417 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414 >gi|269958707|ref|YP_003328494.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel] gi|269848536|gb|ACZ49180.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel] Length = 430 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 261/417 (62%), Positives = 319/417 (76%), Gaps = 2/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +D +FTNL G + L + +RG WD +ILE G D II EVK SGLRGRGGAGF Sbjct: 1 MKSEDAVFTNLAGRECPYLEAARARGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW FMPK + RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G Sbjct: 61 TGVKWGFMPKARPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A++Y+RGEF E L A+DE Y GL+G N+ GYD+DI +H GAGAYICGEE+A L Sbjct: 121 AYVYIRGEFYNEYLVLSRALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PRLKPPFPA VGLYGCPTTVNN+E++AVV I+RRG+ W++ G+ NN GT Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTVNNIETVAVVGDIMRRGSQWFASLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVVGGWDNLLAVIPGGSSVPMLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+M+++V G A+ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++E+RI Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRI 417 >gi|58584731|ref|YP_198304.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419047|gb|AAW71062.1| NADH:ubiquinone oxidoreductase, NADH-binding, chain F [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 424 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 263/416 (63%), Positives = 322/416 (77%), Gaps = 2/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +QD+IFTNL G + L + RG W ++L+ G + II+EV+ SGLRGRGGAGFS Sbjct: 1 MKEQDKIFTNLSGKETPLLKGAKKRGSWQKTKELLDLGSEKIIDEVRKSGLRGRGGAGFS 60 Query: 62 TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S ++P YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A Sbjct: 61 TGLKWSFMPKNPSKEQPTYLVVNADESEPGTCKDRDILRYEPHKLLEGVLLASRAISASV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y GL+G N+ K YD+++ +H GAGAYICGEETA L Sbjct: 121 AYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSSYDLNVFIHRGAGAYICGEETAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 181 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILYRGGEWFASLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F +SGHVN PC VEE + I ELIE++ GG+RGGWDNLLAVIPGGSSV +P Sbjct: 241 KIFCVSGHVNNPCNVEEELGIPLRELIEEYAGGVRGGWDNLLAVIPGGSSVSLIPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 IIKMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +IEER Sbjct: 361 RIMKRMVTGNIKHGEIDKLLDLTTQIEGNTICALGDAAAWPIQGLIRHFRHVIEER 416 >gi|99035131|ref|ZP_01314914.1| hypothetical protein Wendoof_01000244 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 417 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFLHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414 >gi|225631349|ref|ZP_03788019.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590954|gb|EEH12166.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 417 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 265/416 (63%), Positives = 317/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KIFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQG I++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGFIRHFRHVIKER 414 >gi|307110580|gb|EFN58816.1| hypothetical protein CHLNCDRAFT_56910 [Chlorella variabilis] Length = 949 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 267/441 (60%), Positives = 316/441 (71%), Gaps = 18/441 (4%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L + RG W ++ KG +WII+EVKASG+RGRGGAGFS Sbjct: 482 LQDSDRIFTNLYGRHDPFLEGAQKRGDWYRTADLIGKGPEWIISEVKASGIRGRGGAGFS 541 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK DRPHYLVVN DE EPGT KDR+IMRH+PH L+EG ++A A A A Sbjct: 542 TGLKWSFMPKNF-DRPHYLVVNGDEGEPGTSKDREIMRHDPHKLLEGILLAGVATRAQAA 600 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ R SL+ A+ E Y +G LG N+ G D + GAGAY+CGEETALLE Sbjct: 601 YIYIRGEYRNYRHSLERAIGEAYQAGYLGKNACGSGMDFHVYTQQGAGAYVCGEETALLE 660 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPP+PAN GLYGCPTT+NNVE+IA +P ILRRG+SWYS GR NN GTK Sbjct: 661 SLEGKQGRPRLKPPYPANAGLYGCPTTINNVETIASIPAILRRGSSWYSSLGRRNNTGTK 720 Query: 241 LFSISGHVNYPCTV--------------EESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 LFSI C +E S ELIEKH GG+RGGWDNLLAVIPG Sbjct: 721 LFSIRHATASQCPRGCRPRQPPVHGGGGDEHTSQARQELIEKHAGGVRGGWDNLLAVIPG 780 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 GSSVP +P +MDYD L+E G+ GT AVIVMD+STDI++AI RLS FYKHESCG Sbjct: 781 GSSVPLVPQSVASEVLMDYDSLQEAGTYFGTGAVIVMDKSTDIVEAIRRLSWFYKHESCG 840 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 QCTPCREG+GW+ ++ R+ G A +EID+ +SK IEG TICALGDAAAWP+QGLI+ Sbjct: 841 QCTPCREGSGWLWDILTRIQTGEADVKEIDMAISISKIIEGHTICALGDAAAWPVQGLIR 900 Query: 407 NFRPLIEERI--DQYHRCNFQ 425 +FRPL+EERI Q R N Q Sbjct: 901 HFRPLVEERIRERQAARANNQ 921 >gi|255004355|ref|ZP_05279156.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Virginia] Length = 430 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 262/417 (62%), Positives = 315/417 (75%), Gaps = 2/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +D FTNL G + L + RG WD +ILE G D II EVK SGLRGRGGAGF Sbjct: 1 MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KWSFMPK + RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G Sbjct: 61 TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L A+DE Y GL+G N+ GYD+DI +H GAGAYICGEE+A L Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV I+RRG+ W+S GR NN GT Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+M++ + ++ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++E+RI Sbjct: 361 RMMKKNGRWNGKRWEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRI 417 >gi|316978440|gb|EFV61427.1| putative NADH oxidoreductase, F subunit [Trichinella spiralis] Length = 709 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 263/427 (61%), Positives = 318/427 (74%), Gaps = 22/427 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+ SGLRGRGGAGF Sbjct: 281 LKDEDRIFTNLYGRHDWKLKGALSRGDWYKTKEILLKGEDWIVKEITKSGLRGRGGAGFP 340 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 341 AGLKWSFMNKPYDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 400 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+R +GL+G N+ GYD D+ VH GAGAYICGEETALLE Sbjct: 401 YIYIR-------------------AGLIGRNACGTGYDFDVFVHRGAGAYICGEETALLE 441 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 442 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVSPTICRRGGSWFASFGRERNHGTK 501 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV+ PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 502 LFCISGHVHTPCTVEEEMSIPLKELIERHGGGVIGGWDNLLAVIPGGSSTPVIPKQICND 561 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L E +GLGTAAVIVM++ TDI+KAI RLS+FYKHESCGQCTPCREG W+ + Sbjct: 562 VLMDFDALIEAKTGLGTAAVIVMNKQTDIVKAIARLSLFYKHESCGQCTPCREGCSWLNK 621 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G + E+D+++E+SK +EG TICAL DAAAWP+QGL+++FRP +E R+ ++ Sbjct: 622 MMWRFVDGNSVPEELDMIWELSKQLEGHTICALADAAAWPVQGLVRHFRPELEARMKKFE 681 Query: 421 --RCNFQ 425 R N Q Sbjct: 682 TLRKNIQ 688 >gi|226470474|emb|CAX70517.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 432 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 252/390 (64%), Positives = 305/390 (78%), Gaps = 1/390 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 41 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 +M R VKG A K EID+++E+SK +EGRTI Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTI 430 >gi|88607132|ref|YP_505037.1| NADH dehydrogenase I subunit F [Anaplasma phagocytophilum HZ] gi|88598195|gb|ABD43665.1| NADH dehydrogenase I, F subunit [Anaplasma phagocytophilum HZ] Length = 426 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 258/417 (61%), Positives = 316/417 (75%), Gaps = 2/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D+D IFTNL G + L+ + SRG W N ++L GRD II E+K SGLRGRGGAGF Sbjct: 1 MRDEDSIFTNLSGKESPYLAAAKSRGTWFNTKELLALGRDKIIQEIKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + YLVVNADESEPGTCKDRDI+R++PH ++EG +IA FA+G Sbjct: 61 TGLKWSFMPKALPEGSSAYLVVNADESEPGTCKDRDIIRYDPHKILEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L A+ E YA GLLG N+ GY++++ +H GAGAYICGEE+A + Sbjct: 121 AYIYIRGEFYNEYTVLFKALQEAYADGLLGENACGSGYNLNVFIHRGAGAYICGEESAQI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG+KG PRLKPPFPA VGLYG PTTVNNVE+IAVV ILRRG+ W+S G NN GT Sbjct: 181 ESIEGRKGMPRLKPPFPAAVGLYGSPTTVNNVETIAVVGDILRRGSGWFSSLGIPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNNPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKHICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTA +IVMD+STD+I+AI R+S FY HESCGQC+PCREGTGWM Sbjct: 301 DITMDFDSLRAAKSGLGTAGLIVMDKSTDLIEAIERISSFYMHESCGQCSPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+M +++ G A++ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++EER+ Sbjct: 361 RMMRKMLDGTAEESEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRSVVEERL 417 >gi|320581561|gb|EFW95781.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor [Pichia angusta DL-1] Length = 488 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/433 (58%), Positives = 320/433 (73%), Gaps = 11/433 (2%) Query: 2 LTDQDRIFTNLY-------GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRG 54 L DQDRIF NLY G L +M G W +IL KG WII+E+KASGLRG Sbjct: 20 LADQDRIFQNLYLGNSKKHGTPSYDLKTAMKIGDWYKTKEILLKGDTWIIDEIKASGLRG 79 Query: 55 RGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 RGGAGF +G+KWSFM ++ P YLVVNADE EPGTCKDR+IMR EPH L+EGC++ Sbjct: 80 RGGAGFPSGLKWSFMNPPGWNKNVGPRYLVVNADEGEPGTCKDREIMRKEPHKLVEGCLV 139 Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAY 170 A A+ A A+IY+RGEF E +LQ A+++ Y +G LG ++ G+ D+ +H G GAY Sbjct: 140 AGRAMNATAAYIYIRGEFYNEAVTLQNAINQAYEAGFLGPDACGSGFAFDVYIHRGMGAY 199 Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230 +CGEETAL+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG W+S Sbjct: 200 VCGEETALIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTICRRGGKWFSS 259 Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 FGRE N GTKLF ISG+VN PCTVEE MSI+ ELI+KHCGG++GGWDNLLAVIPGGSS Sbjct: 260 FGRERNSGTKLFCISGNVNEPCTVEEEMSISMRELIDKHCGGVKGGWDNLLAVIPGGSST 319 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 P L +MDYD L++ GSGLGTAAVIV ++ D+++ I RL FYKHESCGQCTP Sbjct: 320 PILNKETCDDILMDYDALRDAGSGLGTAAVIVFNKQADVLRGIQRLLAFYKHESCGQCTP 379 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 CREG+ ++ ++M+R G AQ++EID E++K +EG +ICA+G+A +WP QGL+KNF+P Sbjct: 380 CREGSTYLSKMMDRFYVGQAQEKEIDKALELTKKVEGHSICAMGEAFSWPYQGLVKNFKP 439 Query: 411 LIEERIDQYHRCN 423 L+ ERI +Y R N Sbjct: 440 LMIERIREYKRQN 452 >gi|154287522|ref|XP_001544556.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] gi|150408197|gb|EDN03738.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] Length = 419 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/383 (65%), Positives = 305/383 (79%), Gaps = 4/383 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMR 99 II+E+KASGLRGRGGAGF +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR Sbjct: 10 IISEIKASGLRGRGGAGFPSGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMR 69 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYD 158 +PH LIEGC++A A+ A A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD Sbjct: 70 KDPHKLIEGCLVAGRAMNATAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYD 129 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ +H G GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV P Sbjct: 130 FDVYLHRGMGAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAP 189 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 TI RRG W++ FGRE N+GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWD Sbjct: 190 TICRRGGKWFASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWD 249 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 NLLAVIPGGSS P LP +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS Sbjct: 250 NLLAVIPGGSSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSA 309 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 FYKHESCGQCTPCREG+ W M++M+R +G A++REID+L E++K +EG TICALG+A A Sbjct: 310 FYKHESCGQCTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFA 369 Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421 WPIQGLI++FRP +E RI +Y + Sbjct: 370 WPIQGLIRHFRPELEARIRKYEQ 392 >gi|300176713|emb|CBK24378.2| subunit NuoF (NDUFV1) [Blastocystis hominis] Length = 503 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/424 (59%), Positives = 314/424 (74%), Gaps = 5/424 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLY + +M RG W ++LE G D II ++KASGLRGRGGA F Sbjct: 66 LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 125 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP++LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A Sbjct: 126 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 185 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A+ E Y G LG N+ GY+ D+ VH GAGAY+CGEE+A L Sbjct: 186 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 245 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG W++GFGR+NN G Sbjct: 246 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 305 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+ EL+EKH GG+RGGWDNL AVIPGG+S L Sbjct: 306 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 365 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYD L SGLG+AAVIVMD+STD++ AI LS FY HESCGQCTPCREG W+ Sbjct: 366 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 425 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI--- 416 +M R+ +G ++REID+L E+ IE TIC L DAA WPI+GL+++++ I ER Sbjct: 426 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRHP 485 Query: 417 DQYH 420 + YH Sbjct: 486 ENYH 489 >gi|156778103|gb|ABU95426.1| NADH dehydrogenase 51 kDa subunit [Sawyeria marylandensis] Length = 440 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 247/424 (58%), Positives = 311/424 (73%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLY L + RG W+N + ++ KG DWII+++K SGLRGRGGAGFS Sbjct: 18 LKDSDRIFTNLYKDFDDFLDGAKKRGDWNNTENLITKGSDWIIDQLKKSGLRGRGGAGFS 77 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+K+SFMPK ++PHYLV+N DESEP TCKDR+I+RHEPH LIEG ++ +++ A A Sbjct: 78 TGLKYSFMPKK-DNKPHYLVINGDESEPQTCKDREIIRHEPHKLIEGALVCGYSLNAKAA 136 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGEF E + LQ A+DE Y SGL+G N+ GYD D+ VH GAGAY+ GEETALLE Sbjct: 137 YIYVRGEFYNEVKVLQKAIDEAYKSGLIGKNACGTGYDFDVFVHRGAGAYVSGEETALLE 196 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR+KPPFPA GL+G PT V+NVE+++VVPTIL+RGA W+S GR NN GTK Sbjct: 197 SLEGKSGKPRIKPPFPAQAGLWGFPTMVSNVETVSVVPTILKRGADWFSSLGRPNNTGTK 256 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV YPCTVEE MSI LIEKHCGG+RGGWDNLLAVIPGGSS +P Sbjct: 257 LYCISGHVKYPCTVEEEMSIPLKTLIEKHCGGVRGGWDNLLAVIPGGSSTAPIPKKVCDS 316 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + S GTA+++V+D+STDI+KA R + FYK ESCGQCTPCREG W+ Sbjct: 317 VLMDFDSLASVNSSFGTASILVLDKSTDIVKAFARQAHFYKEESCGQCTPCREGYAWITD 376 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ KG + +ID L + ++I GR+ICAL D A I GLI NFRP +E + + + Sbjct: 377 MLDSFQKGEGRLEDIDFLMDTCQHISGRSICALADGACQGIIGLINNFRPYLEAKCQKKN 436 Query: 421 RCNF 424 + F Sbjct: 437 KHEF 440 >gi|300123837|emb|CBK25108.2| subunit NuoF (NDUFV1) [Blastocystis hominis] Length = 490 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/424 (59%), Positives = 314/424 (74%), Gaps = 5/424 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLY + +M RG W ++LE G D II ++KASGLRGRGGA F Sbjct: 53 LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 112 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D RP++LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A Sbjct: 113 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 172 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A+ E Y G LG N+ GY+ D+ VH GAGAY+CGEE+A L Sbjct: 173 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 232 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG W++GFGR+NN G Sbjct: 233 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 292 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+ EL+EKH GG+RGGWDNL AVIPGG+S L Sbjct: 293 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 352 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYD L SGLG+AAVIVMD+STD++ AI LS FY HESCGQCTPCREG W+ Sbjct: 353 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 412 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI--- 416 +M R+ +G ++REID+L E+ IE TIC L DAA WPI+GL+++++ I ER Sbjct: 413 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRHP 472 Query: 417 DQYH 420 + YH Sbjct: 473 ENYH 476 >gi|326473915|gb|EGD97924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton tonsurans CBS 112818] gi|326480914|gb|EGE04924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton equinum CBS 127.97] Length = 511 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DW F Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDW----------------SFM 128 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W +P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A A Sbjct: 129 NFKDWDK-----DTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETAL+E Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+GTK Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++ Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483 Query: 421 RCN 423 + N Sbjct: 484 QAN 486 >gi|327295324|ref|XP_003232357.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS 118892] gi|326465529|gb|EGD90982.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton rubrum CBS 118892] Length = 511 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DW F Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDW----------------SFM 128 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W +P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A A Sbjct: 129 NFKDWDK-----DTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETAL+E Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+GTK Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++ Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483 Query: 421 RCN 423 + N Sbjct: 484 QAN 486 >gi|126343112|ref|XP_001368340.1| PREDICTED: similar to NADH dehydrogenase [Monodelphis domestica] Length = 465 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 254/421 (60%), Positives = 308/421 (73%), Gaps = 16/421 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 48 LKDEDRIFTNLYGRHEWRLKGAQSRGDWYKTKEILLKGPDWILNEIKTSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+I A+GA A Sbjct: 108 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIGGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ YD D+ V GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNEASNLQVAIREAYEAGLIGRNACGSDYDFDVFVVRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGSWFASFGRERNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLL VIPGGSS P +P Sbjct: 288 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLGVIPGGSSTPLIPKSVCET 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRS--TDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +MD+DGL + +GLGTAAVIVMDRS T + + R+ P G WM Sbjct: 348 VLMDFDGLIQAQTGLGTAAVIVMDRSVRTPLARPAVRM-------------PLPAGVDWM 394 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +VM R VKG A+ EID +E+SK IEG TICALGD AWP+QGLI++FRP +E+R+ + Sbjct: 395 NKVMWRFVKGDARVSEIDAFWEISKQIEGHTICALGDGPAWPVQGLIRHFRPELEDRMHR 454 Query: 419 Y 419 + Sbjct: 455 F 455 >gi|195576920|ref|XP_002078321.1| GD22602 [Drosophila simulans] gi|194190330|gb|EDX03906.1| GD22602 [Drosophila simulans] Length = 499 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 259/455 (56%), Positives = 313/455 (68%), Gaps = 47/455 (10%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP + +DR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKAWHL----------QDREIMRHDPHKLVEGCLIARRAMGAQAA 159 Query: 122 FIYVRGEFIRERESLQAAVDE----------------------------CYASGLLGSNS 153 +IY+RGEF E +L++ + +A+G S Sbjct: 160 YIYIRGEFYNEEPALRSEISAHPPAVRLSDADAPWAQLPTLIVRVSTSFQHATGHAEPPS 219 Query: 154 --------KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GYD D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GCP Sbjct: 220 WSDWKKACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCP 279 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 TTV NVE++AV PTI RRG W++ FGR N GTKLF+ISGHVN PCTVEE MSI EL Sbjct: 280 TTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRPCTVEEEMSIPLKEL 339 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 IE+HCGG+ GGWDNLL VIPGGSS P +P IMD+DGL + LGTAA+IVMD+ Sbjct: 340 IERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMDK 399 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 STD+IKAI RL FYKHESCGQCTPCREG GWM ++M R VKG AQ EID+L+E+SK I Sbjct: 400 STDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQI 459 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 EG TICALGD AAWP+QGLI++FRP IE+R+ Q H Sbjct: 460 EGHTICALGDGAAWPVQGLIRHFRPEIEKRM-QLH 493 >gi|73982779|ref|XP_864317.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 5 [Canis familiaris] Length = 424 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 254/419 (60%), Positives = 302/419 (72%), Gaps = 41/419 (9%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH A Q Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKH-------------------------AAQ--- 306 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 307 ------------TGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 354 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 355 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 413 >gi|88608878|ref|YP_506590.1| NADH dehydrogenase I subunit F [Neorickettsia sennetsu str. Miyayama] gi|88601047|gb|ABD46515.1| NADH dehydrogenase I, F subunit [Neorickettsia sennetsu str. Miyayama] Length = 413 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/416 (60%), Positives = 309/416 (74%), Gaps = 7/416 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIF+N+ +G +LS+++ RG W + K L+K +WI+ E+K SGLRGRGGAGF Sbjct: 1 MLKPEDRIFSNIQKREGITLSEALRRGDWKDTKKFLDKEPEWIVEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+ Sbjct: 61 PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF E L+ + E + L+ K I VH GAGAYICGEETALL Sbjct: 121 VSYIYIRGEFYNESLVLEKVIQEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPPFPA GLYG PTT+NNVESIA VPTIL RG+ W++ G +N+ GT Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE++ I LIE++ GG+ GGWDNLLAVIPGGSSVP + Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEEYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GS LGT +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ Sbjct: 295 TVTMDFDSLRAVGSSLGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +M++L +G +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR IE R Sbjct: 355 SIMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRDEIEAR 410 >gi|254797065|ref|YP_003081903.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii str. Illinois] gi|254590311|gb|ACT69673.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii str. Illinois] Length = 413 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 251/416 (60%), Positives = 308/416 (74%), Gaps = 7/416 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIF+N+ + +LS+++ RG W + K L+K +WII E+K SGLRGRGGAGF Sbjct: 1 MLKPEDRIFSNIQKRESITLSEALRRGDWKDTKKFLDKEPEWIIEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+ Sbjct: 61 PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF E L+ + E + L+ K I VH GAGAYICGEETALL Sbjct: 121 VSYIYIRGEFYNESLVLEKVIHEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPPFPA GLYG PTT+NNVESIA VPTIL RG+ W++ G +N+ GT Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE++ I LIEK+ GG+ GGWDNLLAVIPGGSSVP + Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEKYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GS LGT +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ Sbjct: 295 TVTMDFDSLRAVGSALGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +M++L +G +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR IE R Sbjct: 355 SLMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRGEIEAR 410 >gi|326919902|ref|XP_003206216.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like, partial [Meleagris gallopavo] Length = 374 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/370 (66%), Positives = 293/370 (79%), Gaps = 1/370 (0%) Query: 57 GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 GAGF TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+ Sbjct: 1 GAGFPTGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAM 60 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175 GA A+IY+RGEF E +LQ A+ E Y +GLLG N+ Y D+ V GAGAYICGEE Sbjct: 61 GARAAYIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEE 120 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE Sbjct: 121 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRER 180 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+RGGWDNLLAVIPGGSS P LP Sbjct: 181 NSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPK 240 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +MD+D L + SGLGTAAVIVMD+STDI+KAI RL FYKHESCGQCTPCREG Sbjct: 241 SVCETVLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGV 300 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 WM +VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R Sbjct: 301 DWMNKVMARFVRGDAQTAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDR 360 Query: 416 IDQYHRCNFQ 425 + ++ Q Sbjct: 361 MRRFGEAKAQ 370 >gi|145475863|ref|XP_001423954.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391016|emb|CAK56556.1| unnamed protein product [Paramecium tetraurelia] Length = 447 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 255/420 (60%), Positives = 303/420 (72%), Gaps = 15/420 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 23 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+ K S +L GTCKDR+I+RH+PH L+EG + FA+ A A Sbjct: 83 SGLKYLIHAKSQSRWKAFLF--------GTCKDREILRHDPHKLVEGALCVGFAMRARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+E Sbjct: 135 YIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPAN GL+GCPTT V TILRRGA+W++ FGR NNRGTK Sbjct: 195 SLEGKPGKPRLKPPFPANAGLWGCPTTFQ------FVATILRRGANWFASFGRPNNRGTK 248 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 249 LFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCET 308 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 309 VLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLVD 368 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+ +R IEERI+ YH Sbjct: 369 LLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRTYREEIEERIEDYH 428 >gi|194374217|dbj|BAG57004.1| unnamed protein product [Homo sapiens] gi|221045632|dbj|BAH14493.1| unnamed protein product [Homo sapiens] Length = 363 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 232/352 (65%), Positives = 281/352 (79%), Gaps = 1/352 (0%) Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 M K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGE Sbjct: 1 MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60 Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 F E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G Sbjct: 61 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 VN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+ Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 352 >gi|332249694|ref|XP_003273992.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Nomascus leucogenys] gi|332249696|ref|XP_003273993.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 2 [Nomascus leucogenys] gi|332249698|ref|XP_003273994.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 3 [Nomascus leucogenys] Length = 363 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 232/349 (66%), Positives = 279/349 (79%), Gaps = 1/349 (0%) Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 M K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGE Sbjct: 1 MNKPSYGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGE 60 Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 F E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G Sbjct: 61 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 VN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+ Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 349 >gi|195342920|ref|XP_002038046.1| GM17964 [Drosophila sechellia] gi|194132896|gb|EDW54464.1| GM17964 [Drosophila sechellia] Length = 435 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 245/420 (58%), Positives = 294/420 (70%), Gaps = 27/420 (6%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 39 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 98 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 99 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 158 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181 +IY+RGEF E ++Q A+ E Y +G YD D+ +H GAGAYICGEETAL+ES Sbjct: 159 YIYIRGEFYNEASNMQLAIAEAYQAG---------YDFDVFMHRGAGAYICGEETALIES 209 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G+PRLKPPFPA+VG++ E++AV W SG Sbjct: 210 LEGKQGKPRLKPPFPADVGVFDAQPQYQ-CETVAV-------HHHWPSGG---------- 251 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 V PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 252 VGSPASVAPPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV 311 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM ++ Sbjct: 312 IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKI 371 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + + Sbjct: 372 MTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHAK 431 >gi|14043258|gb|AAH07619.1|AAH07619 Unknown (protein for IMAGE:3355366) [Homo sapiens] Length = 354 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 228/342 (66%), Positives = 277/342 (80%), Gaps = 1/342 (0%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGEF E +LQ Sbjct: 2 YLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQV 61 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA Sbjct: 62 AIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPA 121 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 +VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE Sbjct: 122 DVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEE 181 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D L + +GLGT Sbjct: 182 MSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGT 241 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+G A+ EID Sbjct: 242 AAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDS 301 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 302 LWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 343 >gi|7684616|gb|AAF08194.2|AF146339_1 NADH:ubiquinone oxidoreductase 51 kDa subunit [Yarrowia lipolytica] Length = 379 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 224/345 (64%), Positives = 278/345 (80%), Gaps = 1/345 (0%) Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A A+IY+RGEF E L Sbjct: 3 PRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAAVL 62 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q A++E YA+GL+G ++ GYD D+ +H G GAY+CGEET+L+ESLEGK G+PRLKPPF Sbjct: 63 QTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETSLIESLEGKAGKPRLKPPF 122 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA VGL+G P+TV NVE++AV PTILRRG W++ FGRE N GTKLF ISG+VN PCTVE Sbjct: 123 PAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNSGTKLFCISGNVNEPCTVE 182 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 E MSI EL+EKHCGGI+GGWDNLL VIPGG SVP LP +MD+D LK++ SGL Sbjct: 183 EEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNICEDVLMDFDALKDVQSGL 242 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTAAVIV+++ D+I+AI R + FYKHESCGQCTPCREGT W+++ M+R G A++REI Sbjct: 243 GTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTWLLKAMDRFRTGQAKEREI 302 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 D+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ ++H Sbjct: 303 DMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMKKFH 347 >gi|215694413|dbj|BAG89406.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704716|dbj|BAG94744.1| unnamed protein product [Oryza sativa Japonica Group] Length = 411 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 229/336 (68%), Positives = 267/336 (79%), Gaps = 1/336 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 +MDYD LK + SGLGTAAVIVMD+STD++ AI RL Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARL 411 >gi|123476595|ref|XP_001321469.1| hydrogenase chain [Trichomonas vaginalis G3] gi|55793663|gb|AAV65812.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Trichomonas vaginalis] gi|121904296|gb|EAY09246.1| hydrogenase chain, putative [Trichomonas vaginalis G3] Length = 429 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 226/414 (54%), Positives = 305/414 (73%), Gaps = 2/414 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +DRIF NL+G +G L+ + RG W+ +++++KG+++I+NEVK S +RGRGGAGF Sbjct: 13 FLDPKDRIFPNLFGDEGADLASAQKRGDWNQTEELIKKGKEFILNEVKKSEIRGRGGAGF 72 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG KWSF+PK S PHYL +NADE EPGTCKDR I+ +EPH L+EG ++AS+ I AH Sbjct: 73 STGQKWSFVPKP-SGIPHYLCINADEGEPGTCKDRQILTNEPHKLVEGALLASYTIHAHT 131 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A++YVRGEF E LQ A+DE YA+GL+G N+K G+D D+ +H GAGAY+CGEETALL Sbjct: 132 AYVYVRGEFRHEIACLQKAIDEAYAAGLIGKNNKFGWDFDMYIHSGAGAYVCGEETALLN 191 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PR KPP+PA GL+ PT +NNVE+I+ VPTI +RG W+S G + ++GTK Sbjct: 192 SIEGKAGRPRFKPPYPAAKGLFQKPTIINNVETISSVPTICKRGGDWFSSIGIKGSKGTK 251 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +++ISGHVN+PC VEE+M I +LI K+ GG+RGGWDNLL +IPGG S P L Q Sbjct: 252 IYAISGHVNHPCVVEEAMGIPIKDLINKYAGGVRGGWDNLLCLIPGGLSCPILTKEQCET 311 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+M Y+ L MGS LGT A+IVMD+ST++ +A R+S FY HESCGQC PCREGT + Sbjct: 312 AVMGYNELSAMGSALGTGAIIVMDKSTNLYEAFRRVSHFYMHESCGQCGPCREGTAKLSD 371 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +M++ +G A K ++ +L +V+ ICAL A++ PI+GL+K FRP +E+ Sbjct: 372 IMDKFAEGKATKHDLLMLKKVAYQTS-NCICALAGASSDPIKGLLKQFRPELEK 424 >gi|307942122|ref|ZP_07657473.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4] gi|307774408|gb|EFO33618.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4] Length = 319 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 226/299 (75%), Positives = 256/299 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL L + RG WD+ +L+KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGLNDWGLEGAKKRGQWDDTKALLDKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDN LAVIPGGSSVPCL A Q++ Sbjct: 241 LFCISGHVNQPCTVEEELGIPFRELIDRHCGGIRGGWDNFLAVIPGGSSVPCLTAEQLK 299 >gi|218671274|ref|ZP_03520944.1| NADH dehydrogenase I subunit F [Rhizobium etli GR56] Length = 290 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 226/285 (79%), Positives = 250/285 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 2 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKHILEKGRDWIINEMKASGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 62 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 122 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 181 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 182 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 241 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWD + P Sbjct: 242 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDICSSSFP 286 >gi|218514662|ref|ZP_03511502.1| NADH dehydrogenase I subunit F [Rhizobium etli 8C-3] Length = 283 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 225/282 (79%), Positives = 249/282 (88%) Query: 23 SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK RPHYLVV Sbjct: 2 AMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVV 61 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 NADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+DE Sbjct: 62 NADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAIDE 121 Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 CY GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GLY Sbjct: 122 CYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLY 181 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 GCPTTVNNVESIAV PTILRRGA W+S GR NN GTKLF +SGHVN PCTVEE M ITF Sbjct: 182 GCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTKLFMLSGHVNKPCTVEEEMGITF 241 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 EL+++H GGIRGGWDNLLAVIPGG+S P +PA + MD Sbjct: 242 RELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIIDCPMD 283 >gi|218678678|ref|ZP_03526575.1| NADH dehydrogenase I subunit F [Rhizobium etli CIAT 894] Length = 269 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 217/269 (80%), Positives = 241/269 (89%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269 LF +SGHVN PCTVEE M ITF EL+++H Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRH 269 >gi|323649954|gb|ADX97063.1| mitochondrial NADH dehydrogenase flavoprotein 1 [Perca flavescens] Length = 341 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 1/337 (0%) Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EPGTCKDR+IMR++PH L+EGC++A A+GA A+IY+RGEF E +LQ A++E YA Sbjct: 1 EGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYA 60 Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +GL+G + GYD D+ V GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GC Sbjct: 61 AGLIGKDCCGSGYDFDVFVMRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGC 120 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PTTV NVE++AV PTI RRG W+ GFGRE N GTKLF+ISGHVN PCTVEE MSI + Sbjct: 121 PTTVANVETVAVAPTICRRGGPWFLGFGRERNSGTKLFNISGHVNNPCTVEEEMSIPLKD 180 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 LIE+H GG+RGGWDNLLAVIPGGSS P +P +MD+DGL + +GLGTAA+IVMD Sbjct: 181 LIERHAGGVRGGWDNLLAVIPGGSSTPLIPKNVCEEVLMDFDGLIQAQTGLGTAALIVMD 240 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +STDII+AI RL FYKHESCGQCTPCREG WM +M R VKG A+ EID+++E+SK Sbjct: 241 KSTDIIRAIARLIEFYKHESCGQCTPCREGVDWMNNMMWRFVKGDARPSEIDMIWELSKQ 300 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 IEG TICALGD AAWP+QGLI++FRP++E RI ++ + Sbjct: 301 IEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEHQQ 337 >gi|218460342|ref|ZP_03500433.1| NADH dehydrogenase I subunit F [Rhizobium etli Kim 5] Length = 263 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/262 (82%), Positives = 235/262 (89%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITF 262 LF +SGHVN PCTVEE M ITF Sbjct: 241 LFMLSGHVNKPCTVEEEMGITF 262 >gi|148701042|gb|EDL32989.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a [Mus musculus] Length = 334 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 258/323 (79%), Gaps = 1/323 (0%) Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 MRH+PH L+EGC++ A+GA A+IY+RGEF E +LQ A+ E Y +GL+G N+ Sbjct: 1 MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSD 60 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 YD D+ V GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV Sbjct: 61 YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GG Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGG 180 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 WDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARL 240 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 FYKHESCGQCTPCREG WM +VM R VKG A+ EID L+E+SK IEG TICALGD Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300 Query: 397 AAWPIQGLIKNFRPLIEERIDQY 419 AAWP+QGLI++FRP +E+R+ ++ Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRF 323 >gi|149061921|gb|EDM12344.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b [Rattus norvegicus] Length = 334 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 257/323 (79%), Gaps = 1/323 (0%) Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 MRH+PH L+EGC++ A+GA A+IY+RGEF E +LQ A+ E Y +GL+G N+ Sbjct: 1 MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSD 60 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 YD D+ V GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV Sbjct: 61 YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GG Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGG 180 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 WDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVM+ STDI+KAI RL Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARL 240 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 FYKHESCGQCTPCREG WM +VM R VKG A+ EID L+E+SK IEG TICALGD Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300 Query: 397 AAWPIQGLIKNFRPLIEERIDQY 419 AAWP+QGLI++FRP +E+R+ ++ Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRF 323 >gi|255647864|gb|ACU24391.1| unknown [Glycine max] Length = 315 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/303 (68%), Positives = 249/303 (82%), Gaps = 1/303 (0%) Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A A+IY+RGE++ ER++L+ A E YA+GLLG N+ G+D D+ +H+GAGAYICGEE Sbjct: 3 ASAAYIYIRGEYVNERKNLEKARQEAYAAGLLGENACGSGFDFDVHIHYGAGAYICGEEA 62 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALLESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN Sbjct: 63 ALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNN 122 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTKLF +SGHVN PCTVEE MSI ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P Sbjct: 123 AGTKLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGIRGGWDNLLAVIPGGSSVPLIPKH 182 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 MDYD LK +G+GLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTG Sbjct: 183 VCDDIFMDYDALKAVGTGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTG 242 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 W+ +MER+ G A+ EID+L E++K IEG TICALGDAAAWP+QGLIK+FRP +E RI Sbjct: 243 WLWTIMERMKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIKHFRPELERRI 302 Query: 417 DQY 419 ++ Sbjct: 303 REH 305 >gi|117926904|ref|YP_867521.1| NADH-quinone oxidoreductase, F subunit [Magnetococcus sp. MC-1] gi|117610660|gb|ABK46115.1| NADH dehydrogenase subunit F [Magnetococcus sp. MC-1] Length = 424 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 237/417 (56%), Positives = 301/417 (72%), Gaps = 5/417 (1%) Query: 8 IFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F N++ +QG+ +L+ + +G + ++K L + II EVK++GLRGRGGAGF G+KW Sbjct: 8 LFKNIH-IQGQNTLAVAQQQGAYKRMEKALGMSGEEIIQEVKSAGLRGRGGAGFPAGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK RP YLV NADE EPGTCKDRD+MR +PH LIEG +IA +A+ + +IY+R Sbjct: 67 SFIPKD-DPRPKYLVCNADEGEPGTCKDRDLMRFDPHLLIEGMIIAGYAVNSKQGYIYIR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF RE E L+AAV E YA+ LLG N G D D+ VH GAGAY+CGEE+ALL SLEG+ Sbjct: 126 GEFYREAEVLEAAVAEAYAANLLGKNILGKGVDFDLAVHRGAGAYVCGEESALLNSLEGE 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPRLKPPFPANVGLYGCPT +NNVE++ VP IL +G +WYS G E + GTKLFS+S Sbjct: 186 KGQPRLKPPFPANVGLYGCPTVINNVETLCAVPAILEKGGAWYSKLGVEKSSGTKLFSVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHVN P E + I LI + GG+RGGW+NL VIPGGSS P L Q +M Y Sbjct: 246 GHVNKPGNYEVELGIPLKSLINDYAGGVRGGWENLKGVIPGGSSTPVLIPEQCETILMSY 305 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L GS LG +VIVMD+ST I+KAI RLS FY+HESCGQCTPCREGTGW+ ++M+R+ Sbjct: 306 EALAGAGSMLGAGSVIVMDKSTCIVKAIARLSKFYRHESCGQCTPCREGTGWLAQIMDRI 365 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 G ++ +IDLL V NI+G+TICALGDAAA P+ G I++FR E + ++ RC Sbjct: 366 ETGQGREGDIDLLLSVCSNIQGKTICALGDAAAMPVVGAIRHFRDEFEYHV-KHGRC 421 >gi|317051066|ref|YP_004112182.1| NADH-quinone oxidoreductase subunit F [Desulfurispirillum indicum S5] gi|316946150|gb|ADU65626.1| NADH-quinone oxidoreductase, F subunit [Desulfurispirillum indicum S5] Length = 428 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 5/420 (1%) Query: 7 RIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 ++ + YG+ +L + G + +DK D I+ EVK SGLRGRGGAGF GMK Sbjct: 10 KVLSAKYGIANSFTLDVARQHGGYAQIDKAFSMSPDQIVEEVKQSGLRGRGGAGFPAGMK 69 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSF+PK +D+P YL VN+DESEPGT KDR I+ +PH LIEG +I +AI +H A+IY+ Sbjct: 70 WSFLPKE-TDKPIYLAVNSDESEPGTFKDRQILEKDPHMLIEGIIITCYAIKSHDAYIYI 128 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE++R+ E LQ A+DE YA+GLLG N+ GY VD+ VH GAGAYICGEE ALLES+EG Sbjct: 129 RGEYVRQAEGLQRAIDEAYAAGLLGENACGKGYRVDVTVHRGAGAYICGEEMALLESIEG 188 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR+KPPFPA VGLYG PT +NNV++IA VP I+ GA+ Y FG E + GT LF I Sbjct: 189 KKGQPRVKPPFPALVGLYGAPTIINNVQTIASVPYIIEHGAAGYRQFGTEKSPGTFLFGI 248 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHV P E + ++ E I+K GGI G L AVIPGGSS P L A + +D Sbjct: 249 SGHVEKPGVYETELGVSMKEFIDKMAGGIWKG-RKLKAVIPGGSSCPVLNAEDVEKCTLD 307 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 Y+ L E GS LG+ +IV D T +++ + L FY+HESCGQCTPCREGTGW+ +++ Sbjct: 308 YESLVENGSMLGSGGMIVSDDQTCMVRNLKNLLYFYQHESCGQCTPCREGTGWIYKIVSD 367 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G + ++DLL E+ N+EG+T+C L AAA P + I FR EE I + +C F Sbjct: 368 IEDGKGKMEDLDLLLEICDNMEGKTVCVLSGAAAMPCRSHILKFRQEFEEHI-KLGKCPF 426 >gi|269469173|gb|EEZ80715.1| NADH dehydrogenase I chain F [uncultured SUP05 cluster bacterium] Length = 422 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/403 (54%), Positives = 273/403 (67%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SL + G + KIL E D II+E+K SGLRGRGGAGF TG+KWSFMP+ +D Sbjct: 16 SLKTYEANGGYSVWRKILKGELTPDQIIDELKTSGLRGRGGAGFPTGLKWSFMPR-NADM 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N+DE EPGTCKDRDI+R PH++IEG I F + A + Y+RGEF+ Sbjct: 75 QKYVVCNSDEGEPGTCKDRDILRFNPHSVIEGMAIGGFVMNATKGYNYIRGEFMEPFYRF 134 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ E Y +GLLG N K D+ H GAGAYICGEETALLESLEGKKGQPR KPPF Sbjct: 135 EGALKEAYKAGLLGENIDKSSISFDLYAHLGAGAYICGEETALLESLEGKKGQPRFKPPF 194 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN+GLYG PTT+NN ES A VP IL +G W++ G EN+ G KLFS++GHVN P E Sbjct: 195 PANIGLYGKPTTINNTESFASVPEILAQGGQWFADIGVENSGGCKLFSVTGHVNKPSNFE 254 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M +F +L+ K GGIR G L AVIPGGSS P L A G MDYDG+++ GS L Sbjct: 255 VPMGTSFKDLL-KMAGGIRKG-RKLKAVIPGGSSTPVLTADVAMGMTMDYDGIEKAGSML 312 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G +VIVMD +T +++ + RL+ FY ESCGQCTPCREGTGW+ RV++R++ G + +I Sbjct: 313 GAGSVIVMDDTTCMVETLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRIMDGNGKADDI 372 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL V + I G TICALGDAAA P++ ++NFR E I+ Sbjct: 373 DLLLGVQEKIIGNTICALGDAAAMPVESFLRNFREEFEYYIEH 415 >gi|148244394|ref|YP_001219088.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii HA] gi|146326221|dbj|BAF61364.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii HA] Length = 422 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/411 (53%), Positives = 280/411 (68%), Gaps = 6/411 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 F NL Q SL + G + + KIL E + II+E+K SGLRGRGGAGF TG+KW Sbjct: 6 FKNLKKDQCWSLKIYEASGGYSSWRKILKGELTPEQIIDELKLSGLRGRGGAGFPTGLKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ SD Y+V N+DE EPGTCKDRDI+R PH +IEG I F + A + Y+R Sbjct: 66 SFMPR-HSDGQKYVVCNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF+ + ++A++E Y +GLLG N + + D+ H GAGAYICGEETALLES+EGK Sbjct: 125 GEFMEPFKRFESALEEAYKAGLLGQNINNSSINFDLYTHLGAGAYICGEETALLESIEGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPANVGL+G PTT+NN ES A VP ILR G W++ G EN+ G KLFS+S Sbjct: 185 KGQPRFKPPFPANVGLFGKPTTINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M I+F +L+E GG+R G L AVIPGGSS P L A + MDY Sbjct: 245 GHVTNPANFEVPMGISFKDLLE-MAGGMRDG-AKLKAVIPGGSSTPVLTAEIVMNMTMDY 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DG+++ GS LG +VIVM+ ST +++ + RL+ FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 303 DGIEKAGSMLGAGSVIVMNESTCMVEVLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + G ++ +IDLL V I G TICALGDAAA P++ ++NFR E I Sbjct: 363 IDGNGRQGDIDLLLSVQNKIMGNTICALGDAAAMPVESFLRNFREEFEYYI 413 >gi|121609757|ref|YP_997564.1| NADH-quinone oxidoreductase subunit F [Verminephrobacter eiseniae EF01-2] gi|121554397|gb|ABM58546.1| NADH-quinone oxidoreductase, F subunit [Verminephrobacter eiseniae EF01-2] Length = 452 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 217/414 (52%), Positives = 281/414 (67%), Gaps = 12/414 (2%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65 GL G +L+D +RG + + ++L + D ++ VK SGLRGRGGAGF TG+K Sbjct: 32 GLNGSNWTLADYEARGGYQGLRRVLGRDGGQGLTPDQVLAMVKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGTCKDRDI++ PH +IEG +IA++A+G + Y+ Sbjct: 92 WSFMPRSFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMLIAAYAMGISVGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + E + A+DE A+G LG G+D + HG GAYICGEETALLESLEG Sbjct: 151 HGEIFKTYERFEVALDEARAAGYLGHGILGSGFDFQLHASHGFGAYICGEETALLESLEG 210 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFP + GLYG PTT+NN E+ A VP I+R GA+ Y G+ NN GTK+FS+ Sbjct: 211 KKGQPRFKPPFPVSYGLYGKPTTINNTETFAAVPWIMRHGAAAYLECGKPNNGGTKIFSV 270 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F +L+E GG+R G L AVIPGGSS P LPA M MD Sbjct: 271 SGDVELPGNYEVPLGTPFAKLLEL-AGGVRQG-RRLKAVIPGGSSAPVLPAAAMMACTMD 328 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIV+D S D+++++WRLS FY HESCGQCTPCREGTGWM RV++R Sbjct: 329 YDAIAKAGSMLGSGAVIVLDDSRDMVESLWRLSYFYMHESCGQCTPCREGTGWMWRVIDR 388 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + G + +++LL V+ NI+GRTICALGDAAA P++ +IK+FRP E I + Sbjct: 389 IRHGQGRAGDLELLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIGK 442 >gi|114321114|ref|YP_742797.1| NADH-quinone oxidoreductase, F subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227508|gb|ABI57307.1| NADH dehydrogenase subunit F [Alkalilimnicola ehrlichii MLHE-1] Length = 425 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/404 (53%), Positives = 279/404 (69%), Gaps = 7/404 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SL + G + +KIL++ ++ II VK + LRGRGGAGF G+KW FMP+ + Sbjct: 17 SLETYRAMGGYQAWEKILKEKTPQEEIIETVKKANLRGRGGAGFPAGVKWGFMPRNAPGQ 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER-ES 135 Y+V N+DESEPGTCKDRDI+R PH L+EG IA +A+GA + Y+RGEF E E Sbjct: 77 -KYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIAGYAMGATVGYNYLRGEFHHEPFER 135 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ AV E +GLLG N + G D ++ H GAGAYICGEE+AL+ESLEGKKGQPR KPP Sbjct: 136 IEQAVREAREAGLLGRNIQGSGIDFELHNHIGAGAYICGEESALMESLEGKKGQPRYKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA VG+YG PTT+NN E++A VP+I+R+G+ W+ G+ NN G K+F +SGHV P Sbjct: 196 FPAQVGVYGRPTTINNTETLASVPSIMRKGSEWFLELGKPNNGGEKIFCVSGHVERPGNF 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F +L+E GG+RGG L AVIPGGSS+P +P M A MDYDGL E+GS Sbjct: 256 EVPLGTPFKDLLEM-AGGVRGG-RKLKAVIPGGSSMPVVPGETMLQATMDYDGLAEIGSA 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ VIVMD +TD++KAI R+S FY ESCGQCTPCREGTGWM RV+ R+V+G + + Sbjct: 314 LGSGGVIVMDETTDMVKAILRISRFYFAESCGQCTPCREGTGWMQRVLRRIVEGKGRHED 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 I+LL + I G TICA G+AAAWP+Q +K+FR E ++ Sbjct: 374 IELLEAAAGQIAGHTICAFGEAAAWPVQSFLKHFRHEFEYYVEH 417 >gi|270158109|ref|ZP_06186766.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae D-4968] gi|289163626|ref|YP_003453764.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150] gi|269990134|gb|EEZ96388.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae D-4968] gi|288856799|emb|CBJ10610.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150] Length = 425 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/400 (54%), Positives = 274/400 (68%), Gaps = 10/400 (2%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +LS S G + KIL++ II+E+K S LRGRGGAGF TG+KWSFM + + Sbjct: 19 TLSAYESVGGYSAWRKILKEQTSPQHIIDELKTSALRGRGGAGFPTGLKWSFMNR---NN 75 Query: 77 P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P Y+V N+DE EPGTCKDRDI+R PH LIEG IA + +GA + Y+RGEF E Sbjct: 76 PVQKYVVCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYTMGATVGYNYIRGEFWLPYE 135 Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ E YA+GLLG N G+D D+ H GAGAYICGEETALL SLEGKKGQPR KP Sbjct: 136 HTEMAIKEAYAAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSLEGKKGQPRFKP 195 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN G K FS+SGHVN P Sbjct: 196 PFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPGN 255 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + F L+E GG+R G + AVIPGG+S+P LP M G MDYD +++ GS Sbjct: 256 FEIPLGTPFKMLVEL-AGGVREG-RKIKAVIPGGTSMPVLPGDVMMGLDMDYDSIQKAGS 313 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG+ AVI+MD +T ++ A++R++ FY ESCGQCTPCREGTGWM+R++ R+ G + Sbjct: 314 GLGSGAVIIMDETTCMVDALYRIAEFYMDESCGQCTPCREGTGWMVRLLHRIKAGHGEPG 373 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 +++ L V+ NIEGRTICALG+AAAWP+Q IK+FR E Sbjct: 374 DVERLVNVANNIEGRTICALGEAAAWPVQSFIKHFRDEFE 413 >gi|198284341|ref|YP_002220662.1| NADH-quinone oxidoreductase subunit F [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667549|ref|YP_002427003.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248862|gb|ACH84455.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519762|gb|ACK80348.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 427 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/423 (51%), Positives = 277/423 (65%), Gaps = 14/423 (3%) Query: 8 IFTNLYGLQGKSLSDS------MSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAG 59 +F N LQ + L DS G +D + ++L D II+E+K S LRGRGGAG Sbjct: 1 MFVNGVTLQNRGLPDSHRLSVYAGTGGYDALRRVLLDSMAPDQIISEIKKSALRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSFMPK + YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA Sbjct: 61 FPTGLKWSFMPKGVTGT-KYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGAS 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177 +I++RGEF+ ++ A++E YA G LG N LG D D+ VH GAGAYICGEETA Sbjct: 120 TGYIFIRGEFVEPIHIVEGALEEAYAKGYLGQNI-LGTDFSFDLYVHRGAGAYICGEETA 178 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+E+LEGKKGQPR KPPFPA+ GLYG PTT+NNVE+ A VP+I+ +G W+ G+ NN Sbjct: 179 LMEALEGKKGQPRFKPPFPASYGLYGQPTTINNVETFASVPSIIAKGGEWFLNLGKPNNG 238 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++GHV P E M F EL+E GG+R G L AVIPGG+S P + Sbjct: 239 GTKIFSVTGHVQRPGNYEVPMGTPFKELLEM-AGGLRPG-RQLKAVIPGGTSTPMVGGEA 296 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M MDYD + + GS LG +VIV+D S I+K + R++ FY HESCGQCTPCREG GW Sbjct: 297 MMAVTMDYDSIAKSGSALGAGSVIVIDDSVCIVKVVERIARFYMHESCGQCTPCREGMGW 356 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RVM RL G ++ ++ LL +V IEGRTICAL D P+ ++ FR E I Sbjct: 357 LWRVMHRLENGQGREEDLQLLLDVGSRIEGRTICALADGGVAPVVSSVRLFREEYEYHIR 416 Query: 418 QYH 420 H Sbjct: 417 HKH 419 >gi|300113270|ref|YP_003759845.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii C-113] gi|299539207|gb|ADJ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii C-113] Length = 427 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 212/381 (55%), Positives = 268/381 (70%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+E+K SGLRGRGGAGF TG+KWSFMPK + Y+V N+DE EPGT KDRDI+R+ P Sbjct: 45 IIDEIKTSGLRGRGGAGFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNP 103 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG IA + IGA + Y RGEF E + A++E Y +GLLG N G D D+ Sbjct: 104 HQLIEGMAIAGYTIGATVGYNYTRGEFSEPIERFEDALEEAYQAGLLGKNILASGVDFDL 163 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 H GAGAYICGEETALLESLEGKKG PR KPPFPA GLYG PTT+NN E++A VP IL Sbjct: 164 YSHPGAGAYICGEETALLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVIL 223 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +G W+ G + GTK+FS+SGHVN P E M I+F +L+E GG+R G + L Sbjct: 224 EKGGPWFLKLGTPTSGGTKIFSVSGHVNRPGNYEVPMGISFKDLLEL-AGGMRNG-NALK 281 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AVIPGG+SVP +PA + A MDYD L + GS LG +VI+MD +T +++A+ R+S FY+ Sbjct: 282 AVIPGGTSVPVMPAETIMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYR 341 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQCTPCREGTGW+ RV+ R+ +G + ++D + V++NI+G TICALGDAAA P+ Sbjct: 342 EESCGQCTPCREGTGWLYRVVHRIEQGQGTQEDLDKVVNVAQNIDGHTICALGDAAAAPV 401 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 IK+FR + ID + RC Sbjct: 402 ISFIKHFRDEFQYHID-HKRC 421 >gi|226486988|emb|CAX75359.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 353 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 197/316 (62%), Positives = 248/316 (78%), Gaps = 2/316 (0%) Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIV 163 L++G VIA A+GA+ A+IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ + Sbjct: 23 LLKG-VIAGKAMGANVAYIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYM 81 Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223 H GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RR Sbjct: 82 HRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRR 141 Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283 G W++ FGRE NRGTKLF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAV Sbjct: 142 GGDWFASFGRERNRGTKLFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAV 201 Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 IPGGSS P LP +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HE Sbjct: 202 IPGGSSTPLLPKDICSTVLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHE 261 Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403 SCGQCTPCREG WM ++M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QG Sbjct: 262 SCGQCTPCREGCRWMGQIMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQG 321 Query: 404 LIKNFRPLIEERIDQY 419 LI++FRP +E R ++ Sbjct: 322 LIRHFRPELEARFAKH 337 >gi|71906593|ref|YP_284180.1| NADH-quinone oxidoreductase, F subunit [Dechloromonas aromatica RCB] gi|71846214|gb|AAZ45710.1| NADH dehydrogenase subunit F [Dechloromonas aromatica RCB] Length = 442 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/403 (53%), Positives = 276/403 (68%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SL D ++RG + + +IL+ ++ +I+EVK S LRGRGGAGF TG+KWSFMP+ Sbjct: 22 SLKDYVARGGYAQLKRILDSKMTQEDVISEVKKSVLRGRGGAGFPTGLKWSFMPRSFPGD 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDIMR+ PH +IEG IA++A+GA+ + YV GE E + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIMRYNPHAVIEGMAIAAYAMGANRGYNYVHGEVWLEYKRF 140 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+D+ A+G +G N G++ ++ HHG GAYICGEETALLES+EGKKGQPR KPPF Sbjct: 141 EEALDQARAAGFIGQNILGSGFNFELFAHHGYGAYICGEETALLESIEGKKGQPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A +P IL+ G + G+ NN GTKLFS+SGHVN P E Sbjct: 201 PASFGLYGKPTTINNTETFASIPFILKMGGEEFLNLGKPNNGGTKLFSVSGHVNRPGNYE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L+E CGG+RGG L AVIPGGSS P +PA + MDYD + + GS L Sbjct: 261 IPLGTPFATLLEM-CGGMRGG-RKLKAVIPGGSSAPVMPADVIMDCTMDYDSISKGGSML 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD + ++KA+ RLS FY ESCGQCTPCREGT WM +V+ R+ G+ + ++ Sbjct: 319 GSGAVIVMDETVCMVKALDRLSFFYHEESCGQCTPCREGTAWMYKVVHRIENGLGKPEDL 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL V NI GRTICALGDAAA+P+Q IK+F E I+ Sbjct: 379 DLLNSVLGNIAGRTICALGDAAAFPVQSFIKHFGKEFEYHIEH 421 >gi|220934167|ref|YP_002513066.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995477|gb|ACL72079.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 425 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 217/414 (52%), Positives = 278/414 (67%), Gaps = 7/414 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKW 66 FT L + +L + G + KIL + ++ +I EVK S LRGRGGAGF TG+KW Sbjct: 6 FTTLQFDEPWTLESYLKVGGYQAWKKILTEKMSQEDVIEEVKKSNLRGRGGAGFPTGLKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DESEPGTCKDRDI+R PH L+EG I +AIGA + Y+R Sbjct: 66 SFMPRNAPGQ-KYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIGGYAIGATVGYNYMR 124 Query: 127 GEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GEF+ E + AV E Y G LG + G D D+ GAGAYICGEETALLESLEG Sbjct: 125 GEFMDEPYQRFAQAVREAYEQGFLGKDILGSGVDFDLYPTLGAGAYICGEETALLESLEG 184 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPAN GLYG PTT+NN ES++ +P+I+R G W++ G + G KLFS+ Sbjct: 185 KKGQPRFKPPFPANFGLYGRPTTINNTESLSSIPSIIREGGDWFAALGIPKSGGEKLFSV 244 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHVN P E + F +L+E GG+ GG L AVIPGGSSVP +P M A MD Sbjct: 245 SGHVNKPGNFEIPLGTPFKDLLE-MAGGVLGG-RKLKAVIPGGSSVPVVPGDVMLTANMD 302 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD +TD+++A+ R+S FY ESCGQCTPCREGTGW+ R++ R Sbjct: 303 YDSIAKAGSMLGSGAVIVMDETTDMVRALQRISRFYFSESCGQCTPCREGTGWLYRMLTR 362 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +V+G + +++ L +V+ IEGRTICALGDAAA P++ +K+FR E I Sbjct: 363 IVEGKGRPEDLERLDDVASKIEGRTICALGDAAAMPVRSFVKHFRHEFEYYIQH 416 >gi|288942129|ref|YP_003444369.1| NADH-quinone oxidoreductase subunit F [Allochromatium vinosum DSM 180] gi|288897501|gb|ADC63337.1| NADH-quinone oxidoreductase, F subunit [Allochromatium vinosum DSM 180] Length = 427 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/406 (53%), Positives = 274/406 (67%), Gaps = 6/406 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L+ G + ++IL + D +I EVK S LRGRGGAGF TG+KWSFMP+ + Sbjct: 22 TLAAYRDLGGYAQWERILRERPDPADLIEEVKRSALRGRGGAGFPTGLKWSFMPRQAPGQ 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N+DE EPGTCKDRDI+R+ PH LIEG IA + IGA + Y+RGEF E Sbjct: 82 -KYIVCNSDEGEPGTCKDRDILRYNPHQLIEGMAIAGYCIGATVGYNYIRGEFYEPIERF 140 Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV E YA+GLLG + + G D D+ H GAGAYICGEETALLES+EGKKGQPR KPPF Sbjct: 141 EDAVREAYAAGLLGRDIQGSGVDFDLYAHMGAGAYICGEETALLESIEGKKGQPRYKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA VGLYG PTT+NN ES+A +P IL +G W+ GR NN G KLFS+SGHVN P E Sbjct: 201 PAQVGLYGRPTTINNTESLASIPVILEKGGQWFLEQGRPNNGGPKLFSVSGHVNAPNNFE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L+E GG++ G L AVIPGGSSVP +P M MDYD + + GS L Sbjct: 261 VPLGTPFRALLEM-AGGVKDG-RKLKAVIPGGSSVPVVPGEIMMDVDMDYDSIAKAGSML 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIV+ T ++K ++ LS FY HESCGQCTPCREGTGW+ RV++R++ G + ++ Sbjct: 319 GSGAVIVIAEGTCMVKVLYNLSHFYMHESCGQCTPCREGTGWLARVIKRILDGQGRAEDL 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +LL V+ I G+TICALGDAAA P+Q +K++R I+ HR Sbjct: 379 ELLDSVAGRIGGKTICALGDAAAMPVQSFLKHYRHEFAYMIEHGHR 424 >gi|119897692|ref|YP_932905.1| putative NADH-ubiquinone oxidoreductase subunit F [Azoarcus sp. BH72] gi|119670105|emb|CAL94018.1| putative NADH-ubiquinone oxidoreductase chain F [Azoarcus sp. BH72] Length = 439 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/421 (52%), Positives = 279/421 (66%), Gaps = 8/421 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59 ++ I L G + L D + RG + + KI+ + + II E+KAS LRGRGGAG Sbjct: 1 MSAHGLILAGLDGDRTWRLQDYIGRGGYSALKKIIAEKIPPETIIAELKASALRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSFMP+ YL N+DE EPGT KDRDI+R+ PHT+IEG VIA++A+GA Sbjct: 61 FPTGLKWSFMPRSFPGD-KYLACNSDEGEPGTFKDRDILRYNPHTVIEGMVIAAYAMGAT 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177 + Y+ GE + + A+DE +GL+G N LG + ++ HHG GAYICGEETA Sbjct: 120 RGYNYIHGEVFELYQRFEEALDEARQAGLVGQNI-LGSEFSFELFAHHGYGAYICGEETA 178 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLES+EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G + G+ NN Sbjct: 179 LLESIEGKKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIINLGGEGFLNLGKPNNG 238 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLFSISGHVN P E ++ F EL+E GG+RGG L AVIPGGSS P LP Sbjct: 239 GTKLFSISGHVNRPGVYEINLGTPFSELLEM-AGGMRGG-RKLKAVIPGGSSAPVLPGDI 296 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M MDYD + + GS LG+ AVIVMD + ++KA+ RLS FY ESCGQCTPCREGTGW Sbjct: 297 MMDCTMDYDSISKAGSMLGSGAVIVMDETVCMVKALERLSYFYFEESCGQCTPCREGTGW 356 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV+ R+ G+ + ++DLL V+ NI GRTICALGDAA+ P+Q IK+F E I+ Sbjct: 357 LYRVVHRIENGLGRPDDLDLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGAEFEYHIE 416 Query: 418 Q 418 Sbjct: 417 N 417 >gi|254496126|ref|ZP_05109025.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12] gi|254354667|gb|EET13303.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12] Length = 428 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/393 (54%), Positives = 272/393 (69%), Gaps = 6/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +LS S G + KIL++ II+E+K S LRGRGGAGF TG+KWSFM + S Sbjct: 22 TLSAYESVGGYSAWRKILKEQTSPQLIIDELKTSALRGRGGAGFPTGLKWSFMNR-NSPV 80 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N+DE EPGTCKDR+I+ PH LIEG IA + +G+ + Y+RGEF E Sbjct: 81 QKYVVCNSDEGEPGTCKDREILALNPHQLIEGMAIAGYVMGSSVGYNYIRGEFWLPYERT 140 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 +AA+ E YA+GLLG N G D D+ H GAGAYICGEETALL SLEGKKGQPR KPPF Sbjct: 141 EAALKEAYAAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSLEGKKGQPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN GTK FS+SGHVN P E Sbjct: 201 PANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGTKCFSVSGHVNKPGNFE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L+E GG++G + AVIPGGSS+P LP M G MDYD +++ GSGL Sbjct: 261 IPLGTPFKTLLEL-AGGVKGD-RRIKAVIPGGSSMPVLPGDVMMGLDMDYDSIQKAGSGL 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVI+MD +T ++ A++R+S FY ESCGQCTPCREGTGW++R++ R+ +G + +I Sbjct: 319 GSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIKEGHGEPGDI 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + L V+ NIEGRTICALG+AAAWP+Q +K+F Sbjct: 379 EKLVNVADNIEGRTICALGEAAAWPVQSFVKHF 411 >gi|58697052|ref|ZP_00372511.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila simulans] gi|58536680|gb|EAL59972.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila simulans] Length = 340 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/325 (62%), Positives = 244/325 (75%), Gaps = 3/325 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G + L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 18 MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 77 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A Sbjct: 78 STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 135 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 136 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 195 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 196 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 255 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSS P +P Sbjct: 256 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 315 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMD 324 MD+D L+ SGLGTAAVIVMD Sbjct: 316 TIEMDFDSLRTAQSGLGTAAVIVMD 340 >gi|256821520|ref|YP_003145483.1| NADH-quinone oxidoreductase subunit F [Kangiella koreensis DSM 16069] gi|256795059|gb|ACV25715.1| NADH-quinone oxidoreductase, F subunit [Kangiella koreensis DSM 16069] Length = 431 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/378 (55%), Positives = 261/378 (69%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II E+K S LRGRGGAGF TG+KWSFMP+ + Y+V N+DE EPGT KDRDI+R P Sbjct: 43 IIEELKLSALRGRGGAGFPTGLKWSFMPRHAPGQ-KYVVCNSDEGEPGTFKDRDILRFNP 101 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H LIEG I + +GA + Y+RGEF + + A+ E Y +GLLG N LG DVD Sbjct: 102 HQLIEGMAIGGYVMGATVGYNYMRGEFYEPIDRFEQALKEAYKAGLLGKNI-LGSDVDFD 160 Query: 163 VHH--GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 +H GAGAYICGEETALLESLEGKKGQPR KPPFPAN GLYG PT VNN ES A VP I Sbjct: 161 LHSHIGAGAYICGEETALLESLEGKKGQPRFKPPFPANYGLYGRPTNVNNTESYASVPVI 220 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 L +G W+ G+ENN GTK+FS+SGHVN P E + F +L++ GG++ G L Sbjct: 221 LDKGGKWFLELGKENNGGTKIFSVSGHVNKPGNYEIGLGTPFKDLLD-MAGGMKDG-KKL 278 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AVIPGGSS P LPA M MDYD + + GS LG+ AVI+MD TD+++ + R++ FY Sbjct: 279 KAVIPGGSSAPVLPADVMMDITMDYDAIGKAGSMLGSGAVIIMDEDTDMVEILGRIAHFY 338 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCGQCTPCREGTGWM R++ R+ G ++ ++ L E++ NI GRTICALGDAAA P Sbjct: 339 YEESCGQCTPCREGTGWMSRMIHRIANGQGKQSDLKDLDEIAGNIMGRTICALGDAAAMP 398 Query: 401 IQGLIKNFRPLIEERIDQ 418 +Q IK F+ E +I+Q Sbjct: 399 VQSFIKCFKQEFEAKIEQ 416 >gi|289641422|ref|ZP_06473586.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca glomerata] gi|289508758|gb|EFD29693.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca glomerata] Length = 442 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/382 (54%), Positives = 267/382 (69%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + + LE G D II VK SGLRGRGGAGF TGMKWSF+P+ DRPHYLV+NADE E Sbjct: 28 YQALRQALELGPDDIIKIVKDSGLRGRGGAGFPTGMKWSFIPQ-GDDRPHYLVINADEGE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M +PH+L+EG +IA++A+ AH AFIY+RGE + L+AAV E Y +G Sbjct: 87 PGTCKDAPLMTADPHSLVEGIIIAAYAVRAHRAFIYLRGELVHCGRRLRAAVAEAYRAGY 146 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG + G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY PT Sbjct: 147 LGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTV 206 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+IA VP ++RRG W+ GRE + G K++S+SGHV P E M T EL+E Sbjct: 207 VNNVETIATVPFVIRRGVEWFRSMGRERSPGPKIYSLSGHVTRPGQYEAPMGTTLAELLE 266 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GGIRGG L A PGGSS P L A + +D++G+ E GS LGTAA+++MD + Sbjct: 267 L-AGGIRGG-RRLKAWTPGGSSTPMLTADHL-DVPLDFEGVVEAGSLLGTAAIMIMDETV 323 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D++K + RL+ FY HESCG+CTPCREGT WM++++ RL +G ++D L + NI G Sbjct: 324 DMLKVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRLERGQGDAEDVDTLVDACDNIFG 383 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 R CAL D A PI IK FR Sbjct: 384 RAFCALADGATSPIVSGIKFFR 405 >gi|91789111|ref|YP_550063.1| NADH-quinone oxidoreductase subunit F [Polaromonas sp. JS666] gi|91698336|gb|ABE45165.1| NADH dehydrogenase subunit F [Polaromonas sp. JS666] Length = 467 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 219/407 (53%), Positives = 273/407 (67%), Gaps = 12/407 (2%) Query: 20 LSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L D +RG + + KIL K D +I EVKAS LRGRGGAGF TG+KWSFMP+ Sbjct: 48 LKDYEARGGYQALRKILGKDGGEGLTPDQVIAEVKASSLRGRGGAGFPTGLKWSFMPRQF 107 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + YLV N+DE EPGTCKDRDIM++ PH++IEG IA++A+G + Y+ GE Sbjct: 108 PGQ-KYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISIGYNYIHGEIFATY 166 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRL 191 + A+DE A+GL+G LG +H HG GAYICGEETALLESLEGKKGQPR Sbjct: 167 RRFEEALDEARAAGLIGEKI-LGSSFTFQLHASHGFGAYICGEETALLESLEGKKGQPRF 225 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK++S+SG V P Sbjct: 226 KPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIYSVSGDVELP 285 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M F L+E GG+R G L AVIPGGSS P LPA M MDYD + + Sbjct: 286 GNYEVPMGTPFARLLEL-AGGVRKG-RTLKAVIPGGSSAPVLPASIMMDCTMDYDSIAKA 343 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ RV++R+ G + Sbjct: 344 GSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWRVVDRIHNGHGK 403 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++DLL V+ NI+GRTICALGDAAA P++ +IK+FR E I Q Sbjct: 404 QTDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEAMIPQ 450 >gi|257095314|ref|YP_003168955.1| NADH-quinone oxidoreductase subunit F [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047838|gb|ACV37026.1| NADH-quinone oxidoreductase, F subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 442 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/411 (52%), Positives = 278/411 (67%), Gaps = 9/411 (2%) Query: 14 GLQGKS---LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSF 68 GL G + L+D + RG + + +ILE+ ++++INEVK S LRGRGGAGF TG+KWSF Sbjct: 14 GLDGDNAWRLADYVKRGGYTALRRILEEKLPQEYVINEVKKSVLRGRGGAGFPTGLKWSF 73 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 MP+ Y+V N+DE EPGT KDRDI+R++PH++IEG IA FA+GA + Y+ GE Sbjct: 74 MPRSFPGD-KYVVCNSDEGEPGTFKDRDILRYDPHSVIEGMAIAGFAMGAGRGYNYIHGE 132 Query: 129 FIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 E + A+DE A+GLLG + G++ D+ HHG GAYICGEETALLES+EGKKG Sbjct: 133 VWEIYERFEEALDEARAAGLLGKDILGSGFNFDLFAHHGYGAYICGEETALLESIEGKKG 192 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPR KPPFPA+ GLYG PTT+NN E+ A +P I+ G Y G+ NN GTKLFS+SGH Sbjct: 193 QPRFKPPFPASFGLYGKPTTINNTETFASIPYIINLGGEHYLEAGKANNGGTKLFSVSGH 252 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 VN P E + F L++ GG+RGG L IPGGSS P +PA M MDYD Sbjct: 253 VNRPGNYEIPLGTPFATLLDM-AGGMRGG-RQLKGCIPGGSSSPVVPAATMMDCTMDYDS 310 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + + GS LG+ AVIVMD +T ++KA+ RLS FY ESCGQCTPCREGT W+ +++ R+ Sbjct: 311 ISKAGSMLGSGAVIVMDETTCMVKALERLSFFYYEESCGQCTPCREGTNWLYKIVHRIEH 370 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + ++DLL V+ NI GRTICALGDAA+ P+Q IK++R I+ Sbjct: 371 GQGRADDLDLLASVTTNIMGRTICALGDAASMPVQSFIKHYRDEFAYHIEH 421 >gi|52842982|ref|YP_096781.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630093|gb|AAU28834.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 428 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/403 (52%), Positives = 270/403 (66%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SLS S G + KIL++ II E+K S LRGRGGAGF TG+KWSFM + S Sbjct: 22 SLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNR-NSPV 80 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N+DE EPGTCKDR+I+ PH LIEG IA + +GA + Y+RGEF E Sbjct: 81 QKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPFERT 140 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 +AA+ E Y +GLLG N G+D D+ H GAGAYICGEETALL S+EGKKG PR KPPF Sbjct: 141 EAAIKEAYDAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN G K FS+SGHVN P E Sbjct: 201 PANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPGNYE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L++ G I+G + AVIPGGSS+P LP M G MDYD +++ GSGL Sbjct: 261 IPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAGSGL 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVI+MD +T ++ A++R+S FY ESCGQCTPCREGTGW++R++ R++ G + ++ Sbjct: 319 GSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEPGDV 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L V+ NIEGRTICALG+AAAWP+Q +K+F E I Sbjct: 379 EKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKH 421 >gi|302879336|ref|YP_003847900.1| NADH-quinone oxidoreductase, F subunit [Gallionella capsiferriformans ES-2] gi|302582125|gb|ADL56136.1| NADH-quinone oxidoreductase, F subunit [Gallionella capsiferriformans ES-2] Length = 421 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/408 (51%), Positives = 272/408 (66%), Gaps = 9/408 (2%) Query: 19 SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSD 75 +L + + G + + KIL + D II EVK S LRGRGGAGF TG+KWSFMP+ D Sbjct: 17 TLENYLKVGGYQALRKILTEQTSPDAIIAEVKLSALRGRGGAGFPTGLKWSFMPRSFAGD 76 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + Y+V N+DE EPGTCKD DIM + PH LIEG IA++ + + Y+ GE E Sbjct: 77 K--YIVCNSDEGEPGTCKDWDIMLYNPHLLIEGMAIAAYTMNVKTGYNYIHGEIFEAYER 134 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ A + A+G LG N LG+ D+ H G GAYICGEETALLES+EGKKGQPR KPP Sbjct: 135 MEEACELARAAGFLGDNIMGLGFSFDLHNHLGYGAYICGEETALLESIEGKKGQPRFKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A +P I+ G + G+ NN GTKLFS+SGHVN P Sbjct: 195 FPASFGLYGKPTTINNTETFASIPYIINNGGKAFLELGKPNNGGTKLFSVSGHVNNPGNF 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M F +L+E GG+R G L AVIPGGSS+P L M MDYD +++ GSG Sbjct: 255 EVPMGTPFAKLLEM-AGGVRNG-HKLKAVIPGGSSMPVLTGEVMMDLTMDYDSIQKAGSG 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD + +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 313 LGSGAVIVMDETVCMVRALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIEHGQGRPED 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +DLL + +NI GRTICALG+AA WP+QG++KNFR E I ++ RC Sbjct: 373 LDLLLSIGENIAGRTICALGEAAVWPVQGMLKNFRAEFEYHI-EHKRC 419 >gi|289207898|ref|YP_003459964.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. K90mix] gi|288943529|gb|ADC71228.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. K90mix] Length = 426 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 216/415 (52%), Positives = 276/415 (66%), Gaps = 9/415 (2%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMK 65 F Y SL S G + ++K+ KG+ + +I EVK S LRGRGGAGF TG+K Sbjct: 7 FATRYLDDPASLETYKSVGGYQALEKVY-KGKMAPEDVIEEVKTSNLRGRGGAGFPTGLK 65 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + Y+V N+DESEPGTCKDR+I+ + PH LIEG IA +AIGA + Y+ Sbjct: 66 WSFMPRNTPGQ-KYIVCNSDESEPGTCKDREILMYNPHALIEGMAIAGYAIGATVGYNYM 124 Query: 126 RGEFIRERES-LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF+ E + AA+ E Y +G LG + G D D+ GAGAYICGEETALLESLE Sbjct: 125 RGEFMDEVNTRFTAALKEAYDAGYLGKDIFGSGVDFDLYPSLGAGAYICGEETALLESLE 184 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN ES+A +P I+R G W++ G + G KLFS Sbjct: 185 GKKGQPRFKPPFPANYGLYGKPTTINNTESLASIPAIIRNGGQWFADLGVPKSGGEKLFS 244 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SGHVN P E + F +L+E G + G L AVIPGGSSVP +P M A M Sbjct: 245 VSGHVNKPGNYEIPLGTPFKDLLEMSGGVLNG--RKLKAVIPGGSSVPVVPGDVMLKANM 302 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LG+ AVIVMD + D++KA+ R+S FY ESCGQCTPCREGTGW+ R++ Sbjct: 303 DFDSIAQAGSMLGSGAVIVMDETADMVKALQRISRFYFSESCGQCTPCREGTGWLYRMLT 362 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+V+G + +++ L +V+ IEG TICALGDAAA P++ IK+FR E I Sbjct: 363 RIVEGQGRPEDLERLDDVASKIEGHTICALGDAAAMPVRSFIKHFRHEFEYYIQH 417 >gi|120609955|ref|YP_969633.1| NADH-quinone oxidoreductase subunit F [Acidovorax citrulli AAC00-1] gi|120588419|gb|ABM31859.1| NADH dehydrogenase subunit F [Acidovorax citrulli AAC00-1] Length = 452 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/413 (53%), Positives = 281/413 (68%), Gaps = 14/413 (3%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKIL------EKGRDWIINEVKASGLRGRGGAGFSTGMK 65 GL G S+ D +RG + + KIL +D +I VK SGLRGRGGAGF TG+K Sbjct: 32 GLDGTNWSIKDYEARGGYQALRKILGVDGGEPMTQDQVIATVKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGTCKDRDI++ PH +IEG +IA+FA+G + Y+ Sbjct: 92 WSFMPRSFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGISVGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLE 183 GE + E +AA++E A+G LG N LG +H HG GAYICGEETALLESLE Sbjct: 151 HGEIFQTYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAAHGFGAYICGEETALLESLE 209 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GTK+FS Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGTKIFS 269 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E + F +L+E GG+R G L AVIPGGSS P LPA + M Sbjct: 270 VSGDVEKPGNYEIPLGTPFSKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGWM RV++ Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGWMWRVID 387 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+ G+ ++ ++DLL V+ NI+GRTICALGDAAA P++ +IK+FRP E I Sbjct: 388 RIQHGLGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALI 440 >gi|118602280|ref|YP_903495.1| NADH-quinone oxidoreductase, F subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567219|gb|ABL02024.1| NADH dehydrogenase subunit F [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 422 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/404 (53%), Positives = 270/404 (66%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 F +L Q SL + G + KIL E ++II+E+K SGLRGRGGAGF TG+KW Sbjct: 6 FKSLIKDQCWSLKTYEANGGYSVWCKILKGELTPEYIIDELKTSGLRGRGGAGFPTGLKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ SD Y++ N+DE EPGTCKDRDI+R PH +IEG I F + A + Y+R Sbjct: 66 SFMPRH-SDGQKYVICNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF+ + A+ E Y GLLG N + + D+ H GAGAYICGEETALLES+EGK Sbjct: 125 GEFMEPFYRFEDALKEAYKVGLLGRNINNSSVNFDLYTHLGAGAYICGEETALLESIEGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPANVGL+G PT +NN ES A VP ILR G W++ G EN+ G KLFS+S Sbjct: 185 KGQPRFKPPFPANVGLFGKPTMINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M F +L+ K GG+R G L AVIPGGSS P L A MDY Sbjct: 245 GHVKNPANFEVPMGTPFKDLL-KMAGGMRDG-ARLKAVIPGGSSTPVLTAKVAMNMTMDY 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DG+++ GS LG +VI+MD ST +++ + RL+ FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 303 DGIEKAGSMLGAGSVIIMDESTCMVEVLTRLTHFYYDESCGQCTPCREGTGWLYRVLKRI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + G ++ +IDLL V I G TICALGDAAA P++ ++NFR Sbjct: 363 IDGNGEQTDIDLLLGVQDKIIGNTICALGDAAAMPVESFLRNFR 406 >gi|54295613|ref|YP_128028.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens] gi|54298767|ref|YP_125136.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris] gi|148361097|ref|YP_001252304.1| NADH dehydrogenase I subunit F [Legionella pneumophila str. Corby] gi|296108427|ref|YP_003620128.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy] gi|53752552|emb|CAH13984.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris] gi|53755445|emb|CAH16941.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens] gi|148282870|gb|ABQ56958.1| NADH dehydrogenase I, F subunit [Legionella pneumophila str. Corby] gi|295650329|gb|ADG26176.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy] gi|307611653|emb|CBX01344.1| NADH dehydrogenase I chain F [Legionella pneumophila 130b] Length = 425 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/403 (52%), Positives = 269/403 (66%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SLS S G + KIL++ II E+K S LRGRGGAGF TG+KWSFM + S Sbjct: 19 SLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNR-NSPV 77 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N+DE EPGTCKDR+I+ PH LIEG IA + +GA + Y+RGEF E Sbjct: 78 QKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPFERT 137 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 +AA+ E Y +GLLG N G D D+ H GAGAYICGEETALL S+EGKKG PR KPPF Sbjct: 138 EAAIKEAYDAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFKPPF 197 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN G K FS+SGHVN P E Sbjct: 198 PANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPGNYE 257 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L++ G I+G + AVIPGGSS+P LP M G MDYD +++ GSGL Sbjct: 258 IPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAGSGL 315 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVI+MD +T ++ A++R+S FY ESCGQCTPCREGTGW++R++ R++ G + ++ Sbjct: 316 GSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEPGDV 375 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L V+ NIEGRTICALG+AAAWP+Q +K+F E I Sbjct: 376 EKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKH 418 >gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F [Herminiimonas arsenicoxydans] gi|133738929|emb|CAL61976.1| NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I subunit F) (NDH-1 subunit F) [Herminiimonas arsenicoxydans] Length = 431 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 213/415 (51%), Positives = 278/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L + + RG + ++ +IL +G D +I E+KAS LRGRGGAGF +G+KWS Sbjct: 14 LAGLTGDNWGLEEYVKRGGYASLKRILSEGMTSDQVIAEIKASTLRGRGGAGFPSGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMPK + YLV N+DE EPGT KDRDI+R+ PH +IEG IA++A+G + Y+ G Sbjct: 74 FMPKNYEGQ-KYLVCNSDEGEPGTFKDRDILRYNPHAVIEGMAIAAYAMGVSVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E E + A+++ A+G LG + LG Y + HG GAYICGEETALLES+EGK Sbjct: 133 EIFAEYARFEEALEQARAAGFLG-DRILGSAYSFQLHAFHGYGAYICGEETALLESIEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA Y+ G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGADAYAAMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F EL+ K GG+RGG L AVIPGGSSVP + M MDY Sbjct: 252 GDVENPGNYEIPLGTPFAELL-KLAGGVRGG-KKLKAVIPGGSSVPVVKGDLMMATDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 310 DSVAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G + ++D+L ++ NI+GRTICALGDAAA P++ +I NFR E I+ H Sbjct: 370 ENGQGRAEDLDMLNSIADNIQGRTICALGDAAAMPVRAMILNFREEFEYHIEHKH 424 >gi|160900607|ref|YP_001566189.1| NADH-quinone oxidoreductase subunit F [Delftia acidovorans SPH-1] gi|160366191|gb|ABX37804.1| NADH-quinone oxidoreductase, F subunit [Delftia acidovorans SPH-1] Length = 452 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/419 (52%), Positives = 282/419 (67%), Gaps = 11/419 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60 +I+ +L G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF Sbjct: 29 QIYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGF 87 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ + H LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G Sbjct: 88 PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISL 146 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 + Y+ GE E +AA++E A+G LG N + + HHG GAYICGEETALL Sbjct: 147 GYNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALL 206 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GT Sbjct: 207 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGT 266 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+SG VN P E + F +L+E GG+R G L AVIPGGSS P LPA + Sbjct: 267 KIFSVSGDVNLPGNYEVPLGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADIIM 324 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ Sbjct: 325 ECTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLW 384 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RV+ R+ G + +I+LL VS NI GRTICALGDAAA P++ +IK+FR E +I Sbjct: 385 RVVNRIEHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQN 443 >gi|77166018|ref|YP_344543.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC 19707] gi|254436308|ref|ZP_05049814.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] gi|76884332|gb|ABA59013.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707] gi|207087998|gb|EDZ65271.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] Length = 427 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/381 (56%), Positives = 271/381 (71%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+E+KASGLRGRGGAGF TG+KWSFMPK + Y+V N+DE EPGT KDRDI+R+ P Sbjct: 45 IIDEIKASGLRGRGGAGFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNP 103 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG IA +AIGA + Y RGEF E +AA++E Y +GLLG N G D D+ Sbjct: 104 HQLIEGMAIAGYAIGAAVGYNYTRGEFSEPIERFEAALEEAYQAGLLGKNILASGVDFDL 163 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 H GAGAYICGEETALLESLEGKKG PR KPPFPA GLYG PTT+NN E++A VP IL Sbjct: 164 YSHPGAGAYICGEETALLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVIL 223 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +G W+ G + GTK+FS+SGHVN P E M I+F +L+E GG+R G + L Sbjct: 224 EKGGQWFLKLGTPTSGGTKIFSVSGHVNRPGNYEVPMGISFKDLLEL-AGGMRNG-NALK 281 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AVIPGG+SVP +PA + A MDYD L + GS LG +VI+MD +T +++A+ R+S FY+ Sbjct: 282 AVIPGGTSVPVMPAEAIMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYR 341 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQCTPCREGTGW+ RV+ R+ +G + ++D + V++NI+G TICALGDAAA P+ Sbjct: 342 EESCGQCTPCREGTGWLYRVVHRIEQGQGTQEDLDKVVNVAENIDGHTICALGDAAAAPV 401 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 IK+FR + ID + RC Sbjct: 402 ISFIKHFRDEFQYHID-HKRC 421 >gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille] gi|151280658|gb|ABR89068.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille] Length = 431 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/413 (51%), Positives = 279/413 (67%), Gaps = 10/413 (2%) Query: 14 GLQGKS--LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFM 69 GL G + L + + RG + ++ +IL +G + +I EVKAS LRGRGGAGF +G+KWSFM Sbjct: 16 GLTGDNWGLEEYVKRGGYASLKRILSEGMTPEQVIAEVKASTLRGRGGAGFPSGLKWSFM 75 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 PK + + YLV N+DE EPGT KDRDI+R+ PH++IEG IA++A+G + Y+ GE Sbjct: 76 PKNFAGQ-KYLVCNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGVSVGYNYIHGEI 134 Query: 130 IRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKG 187 E + + A+++ A+G LG N LG +H HG GAYICGEETALLESLEGKKG Sbjct: 135 FAEYDRFEEALEQARAAGFLGDNI-LGSTHSFQLHAFHGFGAYICGEETALLESLEGKKG 193 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA Y+ G+ NN GTK+FS+SG Sbjct: 194 QPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGAEAYAAIGKPNNGGTKIFSVSGD 253 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E + F EL+ K GG+RGG L AVIPGGSSVP + M MDYD Sbjct: 254 VENPGNYEIPLGTPFAELL-KLAGGVRGG-KKLKAVIPGGSSVPVVKGDLMMATDMDYDS 311 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + + GS LG+ AVIVMD + ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 312 VAKAGSMLGSGAVIVMDETRCMVKALLRLSYFYYEESCGQCTPCREGTGWLYRMVHRIEN 371 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G + ++D+L V+ NI+GRTICALGDAAA P++ +I+ FR I+ H Sbjct: 372 GQGRPEDLDMLNSVADNIQGRTICALGDAAAMPVRAMIQQFREEFVYHIEHKH 424 >gi|326316104|ref|YP_004233776.1| NADH-quinone oxidoreductase subunit F [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372940|gb|ADX45209.1| NADH-quinone oxidoreductase, F subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 452 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 221/413 (53%), Positives = 279/413 (67%), Gaps = 14/413 (3%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKIL------EKGRDWIINEVKASGLRGRGGAGFSTGMK 65 GL G S+ D +RG + + KIL +D +I VK SGLRGRGGAGF TG+K Sbjct: 32 GLDGTNWSIKDYEARGGYQALRKILGTDGGEPMTQDQVIATVKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGTCKDRDI++ PH +IEG +IA+FA+G + Y+ Sbjct: 92 WSFMPRSFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGISVGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLE 183 GE + E + A++E A+G LG N LG +H HG GAYICGEETALLESLE Sbjct: 151 HGEIFQTYERFEEALEEARAAGYLGDNI-LGSSFSFQLHAAHGFGAYICGEETALLESLE 209 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GTK+FS Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGTKIFS 269 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E + F +L+E GG+R G L AVIPGGSS P LPA + M Sbjct: 270 VSGDVEKPGNYEVPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGWM RV++ Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGWMWRVID 387 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+ G ++ ++DLL V+ NI+GRTICALGDAAA P++ +IK+FRP E I Sbjct: 388 RIQHGQGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALI 440 >gi|319794663|ref|YP_004156303.1| NADH-quinone oxidoreductase, f subunit [Variovorax paradoxus EPS] gi|315597126|gb|ADU38192.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus EPS] Length = 446 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 220/419 (52%), Positives = 284/419 (67%), Gaps = 9/419 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 + +I+ L G + L+D +RG + + KIL +G D +I EVKASGLRGRGGAGF T Sbjct: 25 EPQIYAGLNGTNWR-LADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ + YLV N+DE EPGTCKDRDI++ PH +IEG IA++A+G + Sbjct: 84 GLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180 Y+ GE + + + A++E A+G LG + +G Y+ + HG GAYICGEETALLE Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLG-DKIMGSTYNFQLHAAHGFGAYICGEETALLE 201 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G Y G+ NN GTK Sbjct: 202 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGPAYLECGKPNNGGTK 261 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++S+SG V P E M F +L+E CGG+R G L AVIPGGSS P LPA M Sbjct: 262 IYSVSGDVELPGNYEVPMGTPFSKLLEL-CGGVRKG-RTLKAVIPGGSSSPVLPADIMMA 319 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 320 CTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLKRLSYFYMHESCGQCTPCREGTGWLYR 379 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V++R+ G + ++DLL V+ NI+GRTICALGDAAA P++ +IK+FR E I Y Sbjct: 380 VVDRIHNGQGRATDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438 >gi|160872482|ref|ZP_02062614.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli] gi|159121281|gb|EDP46619.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli] Length = 426 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 217/421 (51%), Positives = 281/421 (66%), Gaps = 7/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFST 62 D F L+ + SL + G ++ ++IL++ + II E+K S LRGRGGAGF T Sbjct: 3 NDICFRTLHFDKPWSLENYRRVGGYEVWERILKEKTPPEQIIAELKRSCLRGRGGAGFPT 62 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSF+ + + Y++ N+DE EPGTCKDRDI+R PH LIEG IA + +GA + Sbjct: 63 GLKWSFITRNAPGQ-KYILCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYVMGATVGY 121 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGE+ E + A+ E Y +G LG N G+D + H GAGAYICGEETAL+ES Sbjct: 122 NYIRGEYDEPFERCETALAEAYEAGWLGENIIGSGFDFQLYNHRGAGAYICGEETALMES 181 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKG PR KPPFPAN GLYGCPTT+NN E++A VP IL++G W+ G+ NN G KL Sbjct: 182 LEGKKGFPRFKPPFPANYGLYGCPTTINNTETLASVPVILQKGGQWFLELGKPNNGGCKL 241 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++GHVN P E + I F EL+ GG++ L AVIPGGSS+P L A M Sbjct: 242 FSVTGHVNKPGNYEVPLGIPFKELLAL-AGGMKAN-RKLKAVIPGGSSMPVLTAEAMWNT 299 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD +T ++K + R++ FYK ESCGQCTPCREGTGWM RV Sbjct: 300 AMDYDSIIKAGSMLGSGAVIVMDETTCMVKVLTRIAHFYKEESCGQCTPCREGTGWMWRV 359 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ +G AQ+ ++DLL V+ I G TICALGDAAA P+Q IK+FR E I ++ R Sbjct: 360 LHRIEQGHAQRSDLDLLESVAGRIMGHTICALGDAAAMPVQSFIKHFRSEFIEHI-EHKR 418 Query: 422 C 422 C Sbjct: 419 C 419 >gi|239816478|ref|YP_002945388.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110] gi|239803055|gb|ACS20122.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110] Length = 446 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 220/419 (52%), Positives = 284/419 (67%), Gaps = 9/419 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 + +I+ L G + L+D +RG + + KIL +G D +I EVKASGLRGRGGAGF T Sbjct: 25 EPQIYAGLNGTNWR-LADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ + YLV N+DE EPGTCKDRDI++ PH +IEG IA++A+G + Sbjct: 84 GLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180 Y+ GE + + + A++E A+G LG + +G Y+ + HG GAYICGEETALLE Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLG-DKIMGSTYNFQLHAAHGFGAYICGEETALLE 201 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G Y G+ NN GTK Sbjct: 202 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGQAYLECGKPNNGGTK 261 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++S+SG V P E M F +L+E CGG+R G L AVIPGGSS P LPA M Sbjct: 262 IYSVSGDVELPGNYEVPMGTPFSKLLEL-CGGVRKG-RTLKAVIPGGSSSPVLPASIMME 319 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 320 CTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLRRLSYFYMHESCGQCTPCREGTGWLYR 379 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V++R+ G + ++DLL V+ NI+GRTICALGDAAA P++ +IK+FR E I Y Sbjct: 380 VVDRIHNGQGRASDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438 >gi|292493663|ref|YP_003529102.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] gi|291582258|gb|ADE16715.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] Length = 427 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/381 (56%), Positives = 267/381 (70%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II EVKASGLRGRGGAGF TG+KWSFMP+ Y+V N+DE EPGT KDRDIMR+ P Sbjct: 45 IIEEVKASGLRGRGGAGFPTGLKWSFMPQNLPGT-KYIVCNSDEGEPGTFKDRDIMRYNP 103 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG IA +AIGA + Y+RGEF+ + +AA++E Y +GLLG N G D D+ Sbjct: 104 HQLIEGMAIAGYAIGATAGYNYIRGEFVEPIDRFEAALEEAYEAGLLGKNILGSGIDFDL 163 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 H GAGAYICGEETALLESLEGKKG PR KPPFPA GLYG PTT+NN ES+A VP IL Sbjct: 164 YSHPGAGAYICGEETALLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTESLASVPVIL 223 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +G W+ G + GTK+FS+SGHVN P E M F +L+E GG+R G + L Sbjct: 224 EKGGQWFLKLGTPTSGGTKIFSVSGHVNRPGNYEVPMGTPFKDLLEL-AGGMRNG-NALK 281 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AVIPGG+SVP +PA + A MDYD L + GS LG +VI+MD +T +++A+ R+S FY Sbjct: 282 AVIPGGTSVPVMPAEAIMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYY 341 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQCTPCREGTGW+ RV+ R+ G + ++D L V++NI+G TICALGDAAA P+ Sbjct: 342 EESCGQCTPCREGTGWLYRVVRRIEHGQGTQEDLDKLVNVAQNIDGHTICALGDAAAAPV 401 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 I++FR + ID + RC Sbjct: 402 ISFIQHFRDEFQYHID-HKRC 421 >gi|17546776|ref|NP_520178.1| NADH dehydrogenase I chain F [Ralstonia solanacearum GMI1000] gi|17429076|emb|CAD15764.1| probable nadh dehydrogenaseI(chain f) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 431 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/402 (52%), Positives = 276/402 (68%), Gaps = 8/402 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + II +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+GLLG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKLFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG L AVIPGGSS P +PA M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|299066338|emb|CBJ37522.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CMR15] Length = 431 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/402 (52%), Positives = 276/402 (68%), Gaps = 8/402 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + II +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+GLLG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG L AVIPGGSS P +PA M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|294340856|emb|CAZ89251.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Thiomonas sp. 3As] Length = 442 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 216/411 (52%), Positives = 276/411 (67%), Gaps = 10/411 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L ++R + + KIL +G + +I EVKAS LRGRGGAGF TG+KWS Sbjct: 25 LAGLNGENWDLQGYLARDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPTGLKWS 84 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH +IEG IA+FA+G + Y+ G Sbjct: 85 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGYNYIHG 143 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185 E + + + A+ + +G LG N LG + +H HG GAYICGEETALLESLEGK Sbjct: 144 EIFEDYDRFEEALRQARDAGYLGDNI-LGSNFSFQLHAAHGFGAYICGEETALLESLEGK 202 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK++S+S Sbjct: 203 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKIYSVS 262 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E M F +L+E GG+R G + L AVIPGGSS P LPA M MDY Sbjct: 263 GDVAKPGNYEVPMGTPFAKLLEL-AGGMREGRE-LKAVIPGGSSAPVLPASIMMDCTMDY 320 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIV++ + ++K++ RLS FY+HESCGQCTPCREGTGW+ RV+ R+ Sbjct: 321 DSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLYRVVHRI 380 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G + ++DLL VS NI GRTICALGDAAA P++ +K+FRP E I Sbjct: 381 ENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHI 431 >gi|222110091|ref|YP_002552355.1| NADH-quinone oxidoreductase subunit F [Acidovorax ebreus TPSY] gi|221729535|gb|ACM32355.1| NADH-quinone oxidoreductase, F subunit [Acidovorax ebreus TPSY] Length = 453 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 220/417 (52%), Positives = 281/417 (67%), Gaps = 14/417 (3%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65 GL G SL D +RG + + K+L K +D +I +K SGLRGRGGAGF TG+K Sbjct: 32 GLNGSNWSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G + Y+ Sbjct: 92 WSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183 GE + E +AA++E A+G LG N LG + + HHG GAYICGEETALLESLE Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETALLESLE 209 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFS 269 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E + F +L+E GG+R G L AVIPGGSS P LPA + M Sbjct: 270 VSGDVERPGNYEVPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM RV+ Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWRVIN 387 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+ ++ ++DLL V+ NI+GRTICALGDAAA P++ ++K+FRP E I H Sbjct: 388 RIQHEAGRESDLDLLNSVADNIQGRTICALGDAAAMPVRAMLKHFRPEFEALIRNAH 444 >gi|56478181|ref|YP_159770.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1] gi|56314224|emb|CAI08869.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1] Length = 437 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 217/403 (53%), Positives = 271/403 (67%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L D + RG + + KI+ + + +I E+KAS LRGRGGAGF TG+KWSFMP+ Sbjct: 19 LQDYIGRGGYSALKKIIAEKIPAETVIAELKASSLRGRGGAGFPTGLKWSFMPRSFPGA- 77 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL N+DE EPGT KDRDI+R+ PH++IEG IA++A+G + Y+ GE E + Sbjct: 78 KYLACNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGCERGYNYIHGEIFEIYERFE 137 Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ E +GLLG LG D ++ HHG GAYICGEETALLES+EGKKGQPR KPPF Sbjct: 138 EALAEAREAGLLG-QKILGSDFSFELFAHHGYGAYICGEETALLESIEGKKGQPRFKPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A VP I+ G + G+ NN GTKLFSISGHVN P E Sbjct: 197 PASYGLYGKPTTINNTETFASVPFIINMGGESFLNLGKPNNGGTKLFSISGHVNRPGNYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M F EL+E GG+RGG L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 257 IGMGTPFAELLEM-AGGMRGG-GKLKAVIPGGSSSPVLPAAVMMDCTMDYDSIAKAGSML 314 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD +T ++KA+ RLS FY ESCGQCTPCREGTGW+ RV+ R+ G+ ++ ++ Sbjct: 315 GSGAVIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRVVHRIENGLGRRDDL 374 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL V+ NI GRTICALGDAA+ P+Q IK+F E I+ Sbjct: 375 DLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGSEFEYHIEN 417 >gi|291613543|ref|YP_003523700.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus ES-1] gi|291583655|gb|ADE11313.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus ES-1] Length = 420 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/408 (52%), Positives = 280/408 (68%), Gaps = 9/408 (2%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + G + + K+L + + II EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 16 NLDNYIKAGGYQALRKVLAEKLSPEAIIAEVKASGLRGRGGAGFPTGLKWSFMPRNYQGD 75 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YLV N+DE EPGTCKDRDI+R+ PH LIEG IA++ + + YV GE E + Sbjct: 76 -KYLVCNSDEGEPGTCKDRDILRYNPHLLIEGMAIAAYTMDVKTGYNYVHGEIFEAYERM 134 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGKKGQPRLKPP 194 + A +E +G LG N +G+D + +H+ G GAY+CGEETALLES+EGKKGQPR KPP Sbjct: 135 EEACEEARKAGYLGKNI-MGFDFEFDLHNHMGYGAYVCGEETALLESIEGKKGQPRFKPP 193 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A +P I+R G ++G G N+ G KLFS+SGHVN P Sbjct: 194 FPASFGLYGKPTTINNTETFASIPYIIREGGQKFAGLGVTNSGGVKLFSVSGHVNNPGNF 253 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F +L+E GG+R G L AVIPGGSS+P LPA M G MD+D +++ GS Sbjct: 254 EMPLGTPFMKLLEM-AGGVRNG-HKLKAVIPGGSSMPVLPAEIMMGLNMDFDSIQKAGSY 311 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IVMD +T ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 312 LGTGAIIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIEHGEGRPED 371 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +DLL ++ NI GRTICALGDAAAWP+QG +K++R E I ++ RC Sbjct: 372 LDLLLDLCGNIAGRTICALGDAAAWPVQGFLKHYRAEFEYHI-EHKRC 418 >gi|254491610|ref|ZP_05104789.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxidans DMS010] gi|224463088|gb|EEF79358.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxydans DMS010] Length = 425 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/380 (53%), Positives = 264/380 (69%), Gaps = 6/380 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ +VK S LRGRGGAGF TG+KWSFMP+ Y+V N+DE EPGTCKDRDI+R+ P Sbjct: 44 ILEQVKNSALRGRGGAGFPTGLKWSFMPRRMPGE-KYIVCNSDEGEPGTCKDRDILRYNP 102 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160 H LIEG +IA + IGA + Y+RGEF E +AA+ E +GLLG N LG D + Sbjct: 103 HQLIEGMIIAGYTIGAGTGYNYIRGEFYEPIERFEAALKEAREAGLLGKNI-LGSDFHFE 161 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + H GAGAYICGEETALLESLEGKKGQPR KPPFPA GLYG PTT+NN E++A +P I Sbjct: 162 LHTHIGAGAYICGEETALLESLEGKKGQPRYKPPFPAGYGLYGRPTTINNTETLASIPVI 221 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 L+ G W+ G +NN G+K+F ++GHVN P E + F EL+E GG+R G ++L Sbjct: 222 LQYGGDWFHEIGTQNNGGSKIFCMTGHVNKPGNYEVPLGTPFSELLEL-AGGVRDG-NSL 279 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AVIPGG+S P +P +M M YDG+ + GS LG +VI+MD T ++KA+ R++ FY Sbjct: 280 KAVIPGGTSTPVVPGDKMLQLDMSYDGIGKGGSMLGAGSVIIMDEKTCMVKALKRIAYFY 339 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCGQCTPCREGTGW+ RV++R+ +G ++ ++D L V++NI G TICALGDAAA P Sbjct: 340 YEESCGQCTPCREGTGWLYRVIKRIEEGQGKQEDLDRLVNVAENINGNTICALGDAAAAP 399 Query: 401 IQGLIKNFRPLIEERIDQYH 420 + IK+FR + ID H Sbjct: 400 VMSFIKHFRDEFQYHIDHGH 419 >gi|83746302|ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] gi|207723878|ref|YP_002254276.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2] gi|207742740|ref|YP_002259132.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] gi|83727052|gb|EAP74177.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] gi|206589083|emb|CAQ36045.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2] gi|206594134|emb|CAQ61061.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] Length = 431 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+G LG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG L AVIPGGSS P +PA M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|34496401|ref|NP_900616.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum ATCC 12472] gi|34102254|gb|AAQ58620.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum ATCC 12472] Length = 431 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/402 (51%), Positives = 270/402 (67%), Gaps = 6/402 (1%) Query: 20 LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L ++RG + + +IL+ ++ +I EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 23 LDAYVARGGYQALRRILDSKMTQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSFPGD- 81 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V N DE EPGT KDRDI+R+ PH+LIEG +IA +A+G + Y+ GE + + Sbjct: 82 KYVVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIAGYAMGTKAGYNYIHGEIFEDYLLFE 141 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E +G LG N G++ ++ HHG GAYICGEETALLESLEGKKGQPR KPPFP Sbjct: 142 EALEEARKAGFLGQNILGSGFNFELYAHHGYGAYICGEETALLESLEGKKGQPRFKPPFP 201 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GLYG PTT+NN ES A VP I+R GA + G+ NN GTKLFS+SGHVN P E Sbjct: 202 ASFGLYGKPTTINNTESFASVPFIIRDGAQTFLEKGKPNNGGTKLFSVSGHVNRPGNYEI 261 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 ++ F EL+E GG+R G L AVIPGGSS P LPA M MDYD + + GS LG Sbjct: 262 ALGTPFSELLEM-AGGMRDG-KKLKAVIPGGSSAPVLPADIMMQCTMDYDSIAKAGSMLG 319 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + AVIVM+ ++KA+ RL+ FY ESCGQCTPCREGTGW+ +V+ R+ G +K +++ Sbjct: 320 SGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYKVIHRIASGQGRKGDLE 379 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 380 LLDSVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYAIEH 421 >gi|241663479|ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12D] gi|309781857|ref|ZP_07676590.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] gi|240865506|gb|ACS63167.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12D] gi|308919498|gb|EFP65162.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] Length = 431 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+G LG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG L AVIPGGSS P +PA M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRVVDRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|319787438|ref|YP_004146913.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas suwonensis 11-1] gi|317465950|gb|ADV27682.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas suwonensis 11-1] Length = 456 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/409 (51%), Positives = 275/409 (67%), Gaps = 8/409 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFS 61 + ++T L+ + S + + G + + +IL + ++ VK SGLRGRGGAGF Sbjct: 20 EHQAVYTTLHFDKPWSYENYLKTGGYQALRRILTEKIPPADVVEMVKQSGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK D Y++ N+DESEPGT KDRDI+R+ PH +IEG IA +A G+ Sbjct: 80 TGLKWSFMPK--GDMQKYILCNSDESEPGTAKDRDILRYNPHAVIEGMAIACYATGSTVG 137 Query: 122 FIYVRGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 + Y+RGEF E E L+ A+ + Y G LG + G D+DI GAGAYICGEETAL+ Sbjct: 138 YNYLRGEFHHEPFEHLEEALADAYKHGWLGKDILGSGVDIDIYNALGAGAYICGEETALM 197 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R GA W+ G+ NN G Sbjct: 198 ESLEGKKGQPRFKPPFPANFGLYGKPTTINNTETYASVPAIVRNGAEWFMNLGKPNNGGC 257 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+SGHV P E + F EL++ CGGIR G + + AVIPGGSS+P LP M Sbjct: 258 KIFSVSGHVARPGNHEIRLGTPFSELLDL-CGGIRNG-NRIKAVIPGGSSMPVLPGEVMM 315 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 G MDYD +++ GSGLG+ AVIVMD +T +++A R++ FY ESCGQCTPCREGTGWM Sbjct: 316 GLTMDYDSIQKAGSGLGSGAVIVMDHTTCMVRACQRIARFYYKESCGQCTPCREGTGWMY 375 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R++ R+ A ++ +L + IEG TICA G+AAAWP+QG +++F Sbjct: 376 RMLTRIANLEATLDDLHMLRTAAGQIEGHTICAFGEAAAWPVQGFLRHF 424 >gi|187929288|ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12J] gi|187726178|gb|ACD27343.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12J] Length = 431 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+G LG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG L AVIPGGSS P +PA M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|121593382|ref|YP_985278.1| NADH-quinone oxidoreductase subunit F [Acidovorax sp. JS42] gi|120605462|gb|ABM41202.1| NADH dehydrogenase subunit F [Acidovorax sp. JS42] Length = 453 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 219/417 (52%), Positives = 281/417 (67%), Gaps = 14/417 (3%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65 GL G SL D +RG + + K+L K +D +I +K SGLRGRGGAGF TG+K Sbjct: 32 GLNGSNWSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G + Y+ Sbjct: 92 WSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183 GE + E +AA++E A+G LG N LG + + HHG GAYICGEETALLESLE Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETALLESLE 209 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFS 269 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E + F +L+E GG+R G L AVIPGGSS P LPA + M Sbjct: 270 VSGDVERPGNYEVPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM RV+ Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWRVIN 387 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+ ++ ++DLL V+ NI+GRTICALGD+AA P++ ++K+FRP E I H Sbjct: 388 RIQHEAGRESDLDLLNSVADNIQGRTICALGDSAAMPVRAMLKHFRPEFEALIRNAH 444 >gi|312796896|ref|YP_004029818.1| NADH-quinone oxidoreductase chain F [Burkholderia rhizoxinica HKI 454] gi|312168671|emb|CBW75674.1| NADH-quinone oxidoreductase chain F (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 441 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/414 (50%), Positives = 279/414 (67%), Gaps = 10/414 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLQDYVARGGYQQLRRILEQKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + A+DE A+G LG N G+ ++ HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWEVYERFEQALDEARAAGYLGHNILGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G +G PTT+NN E+ A VP +L G Y G+ NN GTK+FS+SG Sbjct: 193 GQPRFKPPFPASYGAFGKPTTINNTETFAAVPFLLAIGPQQYLELGKPNNGGTKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 VN P E + F +L+E GG+RG + AVIPGGSS P +P QM +DYD Sbjct: 253 DVNLPGNYEVPLGTPFAKLMEL-AGGVRG---QIKAVIPGGSSAPVVPGEQMMQTDLDYD 308 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVM+ + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 309 SIAKAGSMLGSGAVIVMNDTRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 368 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K+F E ++ H Sbjct: 369 HGQGRQEDLDLLNSVAQNIMGRTICALGDAAAMPVRGMLKHFWNEFEYHVEHKH 422 >gi|297538951|ref|YP_003674720.1| NADH-quinone oxidoreductase subunit F [Methylotenera sp. 301] gi|297258298|gb|ADI30143.1| NADH-quinone oxidoreductase, F subunit [Methylotenera sp. 301] Length = 447 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/405 (52%), Positives = 272/405 (67%), Gaps = 10/405 (2%) Query: 19 SLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 SL + G + + +I+ K D II EVK SGLRGRGGAGF TG+KWSFMP+ D Sbjct: 40 SLETYIKLGGYSALKRIVTEKTKATD-IITEVKTSGLRGRGGAGFPTGLKWSFMPRYF-D 97 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YLV N+DE EPGT KDRDI+R+ PH LIEG IA++ +GA + Y+ GE ++ E Sbjct: 98 GVKYLVCNSDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIHGEIWQDYEI 157 Query: 136 LQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +AA+ E A+G LG N LG ++ D+ HG GAYICGEETAL+ES+EGKKGQPR KP Sbjct: 158 FEAALHEAKAAGYLGENI-LGSNFNFDLYAVHGYGAYICGEETALIESIEGKKGQPRFKP 216 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNN ES +P IL G ++ G N+ GTKLFS+SGHV P Sbjct: 217 PFPASYGVFGKPTNVNNTESYTSIPWILEHGGQAFADLGVPNSGGTKLFSVSGHVEKPGN 276 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M + F+EL+E GG+ G L AVIPGG S P +PA + A MDY+GL + S Sbjct: 277 YEVKMGMPFNELLEL-AGGVWKG-RKLKAVIPGGPSTPVMPAEAIMAATMDYEGLSKARS 334 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG ++IVMD +T ++KA+ RLS F+ ESCGQCTPCREGTGW+ RV++R+V G + Sbjct: 335 SLGAGSMIVMDETTCMVKALHRLSYFFYEESCGQCTPCREGTGWVYRVIDRIVNGKGKME 394 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL +VS NI GRTICALG+AAA P+ IK+FRP E I Sbjct: 395 DLDLLTDVSNNIAGRTICALGEAAATPVLSFIKHFRPEFEYYIQH 439 >gi|332526752|ref|ZP_08402854.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] gi|332111155|gb|EGJ11187.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] Length = 448 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/413 (52%), Positives = 274/413 (66%), Gaps = 14/413 (3%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGA 58 Q +I+ L G + L+D ++RG + + KIL D +I EVK S LRGRGGA Sbjct: 24 QPQIYAGLDGRNWR-LADYVARGGYSALKKILGADGGPGMTPDQVIAEVKLSALRGRGGA 82 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ P YLV N+DE EPGTCKDRDI+ + PH +IEG IA++A+G Sbjct: 83 GFPTGLKWSFMPRQFPG-PKYLVCNSDEGEPGTCKDRDILSYNPHIVIEGMCIAAYAMGI 141 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176 + Y+ GE + + A+DE A+G LG N LG +H HG GAYICGEET Sbjct: 142 RTGYNYIHGEIFEVYQRFEEALDEARAAGFLGDNI-LGSQHSFQLHAFHGFGAYICGEET 200 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G Y G+ NN Sbjct: 201 ALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINHGGQAYLEVGKPNN 260 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+FS+ G V P E M F L+E GG++GG L AVIPGGSS P LPA Sbjct: 261 GGTKIFSVVGDVERPGNFEIPMGTPFATLLEM-AGGVKGG--ALKAVIPGGSSAPVLPAR 317 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 M MDYD + + GS LG+ AVIVM+ +++++ RLS FY+HESCGQCTPCREGTG Sbjct: 318 VMMDLTMDYDAIAKAGSMLGSGAVIVMNDKRCMVRSLMRLSYFYQHESCGQCTPCREGTG 377 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 W+ R++ER+ G + ++ LL V+ NI+GRTICALGDAAA P+QG++K+FR Sbjct: 378 WLWRLVERIETGKGRAEDLALLDSVADNIKGRTICALGDAAAMPVQGMLKHFR 430 >gi|325267322|ref|ZP_08133984.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC 33394] gi|324981259|gb|EGC16909.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC 33394] Length = 433 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/403 (51%), Positives = 269/403 (66%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L+ +RG + + KIL + ++ +I+EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLAAYQARGGYQALRKILSEKTPQNDVIDEVKASGLRGRGGAGFPTGLKWSFMPRSLPGA 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ + PH LIEG +IA +A+ A + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMYNPHALIEGMIIAGYAMCAEAGYNYIHGEIFEGFQRF 140 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 +AA+ E +GLLG N G+D ++ HHG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 141 EAALKEAREAGLLGKNIMGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+++ +P I+R G ++ G E GTKLFSISGHV P E Sbjct: 201 PASFGLYGKPTTINNTETLSSIPFIIRDGGKTFADQGIEGAGGTKLFSISGHVERPGNYE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F +L+E GG+RGG L AVIPGGSS P LP M G MDYD + + GS L Sbjct: 261 VPLGTPFAKLLEM-AGGMRGG-KKLKAVIPGGSSAPVLPGDIMMGLNMDYDSIAKAGSML 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ RV+ R+ G + ++ Sbjct: 319 GSGAIIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRVVHRIASGKGRPDDL 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +LL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 379 ELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRAEFEHYIEH 421 >gi|264677203|ref|YP_003277109.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni CNB-2] gi|299530747|ref|ZP_07044162.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44] gi|262207715|gb|ACY31813.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni CNB-2] gi|298721263|gb|EFI62205.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44] Length = 454 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 223/420 (53%), Positives = 280/420 (66%), Gaps = 13/420 (3%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60 +I+ +L G S+ D +RG + + K+L K +D +I +K SGLRGRGGAGF Sbjct: 34 QIYADLNG-SNWSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGF 92 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ + H LV N+DE EPGTCKDRDI+ PH +IEG +IA+FA+G Sbjct: 93 PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISI 151 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 + Y+ GE E +AA++E A+G LG N LG + + HHG GAYICGEETAL Sbjct: 152 GYNYIHGEIFEVYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETAL 210 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN G Sbjct: 211 LESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGG 270 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+FS+SG VN P E M F +L+E GG+R G L AVIPGGSS P LPA + Sbjct: 271 TKIFSVSGDVNLPGNYEVPMGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADII 328 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+ Sbjct: 329 MDCTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWL 388 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RV+ R+ G + +I+LL VS NI GRTICALGDAAA P++ +IK+FR E +I Sbjct: 389 WRVVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQN 448 >gi|296136701|ref|YP_003643943.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12] gi|295796823|gb|ADG31613.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12] Length = 442 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/411 (52%), Positives = 274/411 (66%), Gaps = 10/411 (2%) Query: 12 LYGLQGK--SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G +L + R + + KIL +G + +I EVKAS LRGRGGAGF TG+KWS Sbjct: 25 LAGLNGDNWALEGYLQRDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPTGLKWS 84 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH +IEG IA+FA+G + Y+ G Sbjct: 85 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGYNYIHG 143 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185 E + + + A+ + +G LG N LG + +H HG GAYICGEETALLESLEGK Sbjct: 144 EIFEDYDRFEEALRQARDAGYLGDNI-LGSNFSFQLHAAHGFGAYICGEETALLESLEGK 202 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK++S+S Sbjct: 203 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRHGGQAYLEVGKPNNGGTKIYSVS 262 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E M F +L+E GG+R G + L AVIPGGSS P LPA M MDY Sbjct: 263 GDVAKPGNYEVPMGTPFAKLLEL-AGGMREGRE-LKAVIPGGSSAPVLPASIMMDCTMDY 320 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIV++ + ++K++ RLS FY+HESCGQCTPCREGTGW+ RV+ R+ Sbjct: 321 DSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLWRVVHRI 380 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G + ++DLL VS NI GRTICALGDAAA P++ +K+FRP E I Sbjct: 381 ENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHI 431 >gi|300703647|ref|YP_003745249.1| NADH-quinone oxidoreductase subunit f [Ralstonia solanacearum CFBP2957] gi|299071310|emb|CBJ42628.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CFBP2957] Length = 431 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/402 (52%), Positives = 274/402 (68%), Gaps = 8/402 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+G LG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGTGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+R G L AVIPGGSS P +PA M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRDG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|253996968|ref|YP_003049032.1| NADH-quinone oxidoreductase subunit F [Methylotenera mobilis JLW8] gi|253983647|gb|ACT48505.1| NADH-quinone oxidoreductase, F subunit [Methylotenera mobilis JLW8] Length = 438 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/377 (54%), Positives = 260/377 (68%), Gaps = 4/377 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+EVKASGLRGRGGAGF TG+KWSFMP+ D YLV N DE EPGT KDRDI+R+ P Sbjct: 57 IISEVKASGLRGRGGAGFPTGLKWSFMPRYF-DGVKYLVCNTDEGEPGTFKDRDIIRYNP 115 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG IA++ +GA + Y+ GE ++ E +AA+ E A+G LG + + D+ Sbjct: 116 HQLIEGMAIAAYTLGARVGYNYIHGEIWQDYEIFEAALHEAKAAGYLGEDLFGTNFSFDL 175 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 HG GAYICGEETAL+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES +P I+ Sbjct: 176 YAVHGYGAYICGEETALIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIM 235 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 + G ++ G N+ GTKLFSISGHV P E +M + F EL+ GGI G L Sbjct: 236 QNGGKAFADLGVANSGGTKLFSISGHVEKPGNYEVNMGMPFTELL-ALAGGIWKG-RQLK 293 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AVIPGG S +PA + GA MDYDGL + S LG ++IVMD +T ++KA+ RLS F+ Sbjct: 294 AVIPGGPSTAVMPASAILGATMDYDGLSKARSSLGAGSMIVMDDTTCMVKALHRLSYFFY 353 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQCTPCREGTGW+ RV++R+VKG + ++DLL +VS NI GRTICALG+AAA P+ Sbjct: 354 EESCGQCTPCREGTGWVYRVIDRIVKGQGKMEDLDLLTDVSNNIAGRTICALGEAAATPV 413 Query: 402 QGLIKNFRPLIEERIDQ 418 IK+FRP E I Sbjct: 414 LSFIKHFRPEFEYYIQH 430 >gi|319779203|ref|YP_004130116.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis MCE9] gi|317109227|gb|ADU91973.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis MCE9] Length = 452 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/394 (54%), Positives = 269/394 (68%), Gaps = 8/394 (2%) Query: 20 LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L D + RG ++ + KIL G ++ II E+KASGLRGRGGAGF TG+KWSFMP+ + Sbjct: 45 LEDYVKRGGYEAIKKILTTGLKQEDIIAELKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 103 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V N+DE EPGT KDRDI+R PH +IEG +I FA+G + Y+ GE E Q Sbjct: 104 KYIVCNSDEGEPGTFKDRDILRFNPHCIIEGMIIGGFAMGVTRGYNYIHGEIFEVYERFQ 163 Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ E A+G LGSN LG D D+ HHG GAYICGEETALLES+EGKKGQPR KPPF Sbjct: 164 EAIHEARAAGYLGSNI-LGTDFCFDLEAHHGYGAYICGEETALLESIEGKKGQPRFKPPF 222 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A VP I+R G Y G NN GTKLFSISG V P T E Sbjct: 223 PASFGLYGKPTTINNAETFAAVPWIIRNGGPAYLEVGLPNNGGTKLFSISGDVEKPGTYE 282 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F +L+E GG+R G L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 283 IPLGTPFSKLLEL-AGGMREGRP-LKAVIPGGSSSPVLPAEIMMQTNMDYDSISKAGSML 340 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVM+ + ++K++ RLS FY+ ESCGQCTPCREGTGW+ R++ R+ G + ++ Sbjct: 341 GSGAVIVMNDTRCMVKSLLRLSHFYQDESCGQCTPCREGTGWLYRLVHRIEHGHGKLEDL 400 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 D L V+ NI GRTICALGDAAA P++G +K++R Sbjct: 401 DQLDRVAGNIMGRTICALGDAAAMPVRGFLKHYR 434 >gi|253998388|ref|YP_003050451.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. SIP3-4] gi|313200464|ref|YP_004039122.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. MP688] gi|253985067|gb|ACT49924.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. SIP3-4] gi|312439780|gb|ADQ83886.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. MP688] Length = 439 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/404 (51%), Positives = 268/404 (66%), Gaps = 8/404 (1%) Query: 19 SLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 SL ++ G + + ++++ K D +I +VK SGLRGRGGAGF TG+KWSFMP+ D Sbjct: 30 SLQAYLNVGGYKQLQRLVQDKVKATD-VITQVKLSGLRGRGGAGFPTGLKWSFMPRYY-D 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YLV N DE EPGT KDRDI+R+ PH LIEG IA++ +GA + Y+ GE ++ E Sbjct: 88 GTKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIHGEIWQDYEI 147 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+DE A+G +G N + D+ HG GAYICGEETAL+ES+EGKKGQPR KPP Sbjct: 148 FERALDEARAAGFIGENLFGTTFSFDLFAVHGYGAYICGEETALIESIEGKKGQPRFKPP 207 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ G++G PT VNN ES +P IL G + G N+ GTKLFS+SGHV P Sbjct: 208 FPASYGVFGKPTNVNNTESYTSIPWILEHGGDAFQALGVPNSGGTKLFSVSGHVERPGNY 267 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M + F EL++ G +G L AVIPGG S +PA + GA MDYDGL + GS Sbjct: 268 EVRMGMPFTELLDIAGGVWKG--RQLKAVIPGGPSTAVMPAAAIMGATMDYDGLSKAGSS 325 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG ++IVMD +T ++K + RLS F+ ESCGQCTPCREGTGW+ RV++R+V+G + + Sbjct: 326 LGAGSMIVMDETTCMVKTLKRLSYFFYEESCGQCTPCREGTGWLYRVVKRIVEGEGRMGD 385 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +DLL +VS NI GRTICALGDAAA P+ IK+FRP E I Sbjct: 386 LDLLTDVSSNISGRTICALGDAAATPVLSFIKHFRPEFEYYIQH 429 >gi|221068607|ref|ZP_03544712.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni KF-1] gi|220713630|gb|EED68998.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni KF-1] Length = 454 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 222/420 (52%), Positives = 280/420 (66%), Gaps = 13/420 (3%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60 +I+ +L G S+ D +RG + + K+L K +D +I +K SGLRGRGGAGF Sbjct: 34 QIYADLNG-SNWSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGF 92 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ + H LV N+DE EPGTCKDRDI+ PH +IEG +IA+FA+G Sbjct: 93 PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISI 151 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 + Y+ GE + +AA++E A+G LG N LG + + HHG GAYICGEETAL Sbjct: 152 GYNYIHGEIFEVYDRFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETAL 210 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN G Sbjct: 211 LESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGG 270 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+FS+SG VN P E M F +L+E GG+R G L AVIPGGSS P LPA + Sbjct: 271 TKIFSVSGDVNLPGNYEVPMGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADII 328 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+ Sbjct: 329 MDCTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWL 388 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RV+ R+ G + +I+LL VS NI GRTICALGDAAA P++ +IK+FR E +I Sbjct: 389 WRVVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQN 448 >gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirillum seropedicae SmR1] gi|300073885|gb|ADJ63284.1| NADH dehydrogenase I (chain F) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/404 (51%), Positives = 270/404 (66%), Gaps = 6/404 (1%) Query: 20 LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L D + RG ++++ +IL + + +I ++KASGLRGRGGAGF TG+KWSFMP+ + Sbjct: 24 LEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQ- 82 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N DE EPGT KDRDI+R+ PH LIEG +I +A+G + Y+ GE E + Sbjct: 83 KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYAMGITVGYNYIHGEIFSAYERFE 142 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E A+G LG N G+ + HHG GAYICGEETALLESLEGKKGQPR KPPFP Sbjct: 143 EALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFP 202 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GLYG PTT+NN E+ A VP I + G Y+ G+ NN GTK+FSISG V P E Sbjct: 203 ASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSISGDVERPGNYEI 262 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + F L+E GG+RGG + AVIPGGSS P + M MDYD + + GS LG Sbjct: 263 PLGTPFSTLLEL-AGGMRGG-KKIKAVIPGGSSAPVIRGDVMMDTTMDYDAIAKAGSMLG 320 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGWM R++ER+ G + ++D Sbjct: 321 SGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWMYRMVERIENGHGKMEDLD 380 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +L V+ NI+GRTICALGDAAA P++ +KNFR E I+ H Sbjct: 381 VLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHIEHKH 424 >gi|114777366|ref|ZP_01452363.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans PV-1] gi|114552148|gb|EAU54650.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans PV-1] Length = 425 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/374 (54%), Positives = 259/374 (69%), Gaps = 4/374 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++E+K SGLRGRGGAGF TG+KWSF+P+ + +P YL+ NADE EPGT KDRDIMR +P Sbjct: 49 IVDEMKLSGLRGRGGAGFPTGLKWSFVPR-NTGKPTYLLCNADEGEPGTFKDRDIMRFDP 107 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG ++A FA+ A+IYVRGEF+ E + A+ E YA+ LLG N GY + + Sbjct: 108 HLLIEGMIMAGFALNVRDAYIYVRGEFLHEANVMNEAIREAYAANLLGENILGSGYSMHL 167 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAGAYICGEETAL+ESLEGK G+PR KPPFPA G Y CPT VNNVE++A VP IL Sbjct: 168 TVHRGAGAYICGEETALIESLEGKPGRPRFKPPFPAVEGFYRCPTVVNNVETLATVPAIL 227 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G +W++ G NN G K+FS+SGHVN P E M + LIE++CGG++ G + Sbjct: 228 EHGGAWHAAIGVPNNTGCKIFSVSGHVNKPGNYEVPMGTSLKTLIEEYCGGLQHGSVPKV 287 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 VIPGGSS P L A A + YDG+ + GS LG+ A+IVMD + D+I RL+ FY Sbjct: 288 -VIPGGSSTPWLTAEHYE-APLTYDGMIKAGSMLGSGAIIVMDETADLIAVTRRLAHFYA 345 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 HESCGQCTPCREGTGW+ R+M R+ G A +I +L + + ++ GRTICAL D AA PI Sbjct: 346 HESCGQCTPCREGTGWLERIMIRVENGQACAEDIQVLSDAATHMAGRTICALADGAAAPI 405 Query: 402 QGLIKNFRPLIEER 415 ++K+F + R Sbjct: 406 LSMLKHFPDEVRAR 419 >gi|124266601|ref|YP_001020605.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124259376|gb|ABM94370.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 448 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 219/416 (52%), Positives = 281/416 (67%), Gaps = 15/416 (3%) Query: 14 GLQGKS--LSDSMSRGHWDNVDKILEKGR-------DWIINEVKASGLRGRGGAGFSTGM 64 GL G++ L D +RG + + +IL+ G D +I EVKASGLRGRGGAGF TG+ Sbjct: 28 GLDGRNWRLKDYEARGGYQALRRILQGGEGVEPMTPDQVIAEVKASGLRGRGGAGFPTGL 87 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWSFMP+ + YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G + Y Sbjct: 88 KWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILAYNPHIVIEGMIIAAYAMGISVGYNY 146 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESL 182 + GE E + A++E A+G LG N+ LG +H HG GAYICGEETALLESL Sbjct: 147 IHGEIFEIYERFEEALEEARAAGYLG-NAILGSAHSFQLHAFHGFGAYICGEETALLESL 205 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+F Sbjct: 206 EGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIF 265 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+ G V P E + F L+E GG++GG L AVIPGGSS P LPA M Sbjct: 266 SMVGDVERPGNYEIPLGTPFSTLLEL-AGGVKGG-RGLKAVIPGGSSAPVLPASIMMNTT 323 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY+HESCGQCTPCREGTGW+ R++ Sbjct: 324 MDYDSIAKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYQHESCGQCTPCREGTGWLWRMV 383 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +R+ +G + +IDLL V+ NI+GRTICALGDAAA P++ +IK+FR I+ Sbjct: 384 DRIERGHGRMEDIDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFREEFVHHIEH 439 >gi|94309877|ref|YP_583087.1| NADH-quinone oxidoreductase, F subunit [Cupriavidus metallidurans CH34] gi|93353729|gb|ABF07818.1| NADH:ubiquinone oxidoreductase, chain F [Cupriavidus metallidurans CH34] Length = 431 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/412 (50%), Positives = 277/412 (67%), Gaps = 8/412 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL GK+ L D + RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLDGKNWHLEDYVKRGGYKQLRRILEEKVTPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRAFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E +G LG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEEALEEARRAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLEVGPENYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFATLLEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E ++ Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422 >gi|332285012|ref|YP_004416923.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas sp. T7-7] gi|330428965|gb|AEC20299.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas sp. T7-7] Length = 455 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/411 (52%), Positives = 270/411 (65%), Gaps = 10/411 (2%) Query: 14 GLQGKS--LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFM 69 GL G + L D + RG ++ + KIL G D +I EVKAS LRGRGGAGF TG+KWSFM Sbjct: 40 GLDGANWGLEDYVKRGGYEALRKILTTGMTPDDVIAEVKASSLRGRGGAGFPTGLKWSFM 99 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 P+ + YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ GE Sbjct: 100 PRTLPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGITVGYNYIHGEI 158 Query: 130 IRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKG 187 E + A+++ A+G LG + LG + +H HG GAYICGEETALLESLEGKKG Sbjct: 159 FEIYERFEEALEQARAAGFLG-DKILGSEFSFQLHAFHGYGAYICGEETALLESLEGKKG 217 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPR KPPFPA+ GLYG PTT+NN E+ A VP I R A Y G N GTKLFSISG Sbjct: 218 QPRFKPPFPASFGLYGKPTTINNTETFAAVPWIFRHSAQEYLDIGVANAGGTKLFSISGD 277 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E + F +L+E GG+RGG L AVIPGGSS P LPA M MDYD Sbjct: 278 VELPGNYEIPLGTPFSKLLEL-AGGMRGG-RKLKAVIPGGSSAPVLPAEIMMQTNMDYDS 335 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 336 IAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMLARIEN 395 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + ++D+L V+ NI GRTICALGDAAA P++ IK+FR I+ Sbjct: 396 GQGRPEDLDVLDSVAHNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446 >gi|82702225|ref|YP_411791.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis ATCC 25196] gi|82410290|gb|ABB74399.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196] Length = 425 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 208/369 (56%), Positives = 257/369 (69%), Gaps = 6/369 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II EVK S LRGRGGAGF TG+KWSFMPK + YLV N+DE EPGT KDRDIMR+ P Sbjct: 47 IIEEVKKSALRGRGGAGFPTGLKWSFMPKQ-YEGDKYLVCNSDEGEPGTFKDRDIMRYNP 105 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H LIEG +I ++A+G + YV GE E ++ AVDE A+G LG N LG D Sbjct: 106 HMLIEGMLIGAYAMGIRAGYNYVHGEIWDVYERMEEAVDEARAAGYLGDNI-LGSDFSFQ 164 Query: 163 V--HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + HHG GAYICGEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I Sbjct: 165 LYNHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFASVPWI 224 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 +R G + G+ NN GTK+FS+SGHVN P E + F L+E GG+RGG L Sbjct: 225 IRHGGDKFLQLGKPNNGGTKIFSVSGHVNKPGNYEVPLGTPFAALLEM-AGGMRGG-RKL 282 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 IPGGSS+P LP M MDYD + + GS LG+ AVI+MD +T +++A+ RLS FY Sbjct: 283 KGCIPGGSSMPVLPGDVMMQTDMDYDSIAKAGSFLGSGAVIIMDDTTCMVRALERLSYFY 342 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCGQCTPCREGTGW+ R++ R+ G + ++DLL ++ NI+GRTICALGDAAA P Sbjct: 343 YEESCGQCTPCREGTGWLYRIVHRIETGKGRMEDLDLLNNLADNIQGRTICALGDAAAMP 402 Query: 401 IQGLIKNFR 409 ++ +I++FR Sbjct: 403 VRAMIQHFR 411 >gi|91776408|ref|YP_546164.1| NADH-quinone oxidoreductase, F subunit [Methylobacillus flagellatus KT] gi|91710395|gb|ABE50323.1| NADH dehydrogenase subunit F [Methylobacillus flagellatus KT] Length = 441 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/375 (54%), Positives = 255/375 (68%), Gaps = 4/375 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II++VK SGLRGRGGAGF TG+KWSFMP+ D YLV N DE EPGT KDRDI+R+ P Sbjct: 46 IISQVKLSGLRGRGGAGFPTGLKWSFMPRYF-DGTKYLVCNTDEGEPGTFKDRDIIRYNP 104 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-NSKLGYDVDI 161 H LIEG IA++ +GA + Y+ GE RE E +AA+DE A+G LG + D+ Sbjct: 105 HQLIEGMAIAAYTLGARVGYNYIHGEIWREYEIFEAALDEARAAGYLGECLFDTDFSFDL 164 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 HG GAYICGEETAL+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES +P I+ Sbjct: 165 YAVHGYGAYICGEETALIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIM 224 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G + G N+ GTK+FS+SGHV P E +M F EL+ GG+ G L Sbjct: 225 EHGGQAFQELGVANSGGTKIFSVSGHVEKPGNYEVNMGTPFTELL-ALAGGVWKG-RQLK 282 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AVIPGG S LPA + GA MDYDGL + GS LG ++IVMD +T ++K + RLS F+ Sbjct: 283 AVIPGGPSTAILPASAIMGATMDYDGLSKAGSSLGAGSMIVMDETTCMVKTLKRLSYFFY 342 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQCTPCREGTGW+ RV++R+V G + ++DLL +VS NI GRTICALGDAAA P+ Sbjct: 343 EESCGQCTPCREGTGWLYRVIKRIVDGQGRMEDLDLLTDVSSNISGRTICALGDAAATPV 402 Query: 402 QGLIKNFRPLIEERI 416 IK+FRP E I Sbjct: 403 LSFIKHFRPEFEYYI 417 >gi|226939461|ref|YP_002794534.1| NuoF [Laribacter hongkongensis HLHK9] gi|226714387|gb|ACO73525.1| NuoF [Laribacter hongkongensis HLHK9] Length = 431 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 212/403 (52%), Positives = 265/403 (65%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + RG + + KI+ + ++ +I EVK S LRGRGGAGF TG+KWSFMP+ Sbjct: 23 LDAYVKRGGYQALKKIIGNKIPQEDVIAEVKGSNLRGRGGAGFPTGLKWSFMPRSFPGD- 81 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N DE EPGT KDRDI R PH LIEG +IA++A+G + Y+ GE E + + Sbjct: 82 KYLVCNTDEGEPGTFKDRDIHRFNPHALIEGMIIAAYAMGVKRGYNYIHGEIFEEYQRFE 141 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+DE +GLLG NS L + D+ HHG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 142 EALDEARRAGLLG-NSILDSEFSFDLFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN ES A VP I+R G + G+ NN GTKLFS+SGHVN P E Sbjct: 201 PASFGLYGKPTTINNTESFASVPFIIRDGGQSFLEKGKPNNGGTKLFSVSGHVNRPGNFE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F EL+E GG++ G L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 261 VPLGTPFAELLEM-AGGMKDG-KKLKAVIPGGSSAPVLPADIMMDCTMDYDSIAKAGSML 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVM+ ++KA+ RL+ FY ESCGQCTPCREGTGW+ R++ R+ G + ++ Sbjct: 319 GSGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRIIHRIEHGEGRPEDL 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 379 DLLASVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYHIEH 421 >gi|186476759|ref|YP_001858229.1| NADH-quinone oxidoreductase subunit F [Burkholderia phymatum STM815] gi|184193218|gb|ACC71183.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phymatum STM815] Length = 442 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 213/417 (51%), Positives = 275/417 (65%), Gaps = 13/417 (3%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLQDYVERGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E +AA++E +G LG N G+ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIFEVYRRFEAALEEARTAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+SG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M MDYD Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 G+ +K ++DLL V++NI GRTICALGDAAA P++G++K++ E YH N Sbjct: 371 HGLGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFE-----YHVAN 422 >gi|224824818|ref|ZP_03697925.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002] gi|224603311|gb|EEG09487.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002] Length = 431 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 212/403 (52%), Positives = 266/403 (66%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L ++RG + + KIL+ ++ +I EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 23 LDAYVARGGYQALRKILDSKLPQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSFPGD- 81 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V N DE EPGT KDRDI+R PH LIEG +IA +A+G + Y+ GE E + + Sbjct: 82 KYVVCNTDEGEPGTFKDRDILRFNPHALIEGMIIAGYAMGTKAGYNYIHGEVFAEYQRFE 141 Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++E +G LG + LG D ++ HHG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 142 EALEEARKAGFLGQHI-LGTDFSFELYAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN ES A VP I+R GA + G+ NN GTKLFS+SGHVN P E Sbjct: 201 PASFGLYGKPTTINNTESFASVPFIIRDGAQKFLEAGKPNNGGTKLFSVSGHVNRPGNYE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L+E GG+R G L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 261 IPLGTPFSTLLEM-AGGMRDG-KKLKAVIPGGSSAPILPAEIMMSCTMDYDSISKAGSML 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVM+ +IKA+ RL+ FY ESCGQCTPCREGTGW+ RV+ R+ G + ++ Sbjct: 319 GSGAVIVMNEDVCMIKALERLAYFYHEESCGQCTPCREGTGWLYRVIHRIANGEGRPGDL 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +LL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 379 ELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRHEFEYAIEH 421 >gi|237748886|ref|ZP_04579366.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13] gi|229380248|gb|EEO30339.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13] Length = 433 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/416 (51%), Positives = 283/416 (68%), Gaps = 13/416 (3%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 GL G +L+D +SRG ++ +IL + R+ II+EV+ASGLRGRGGAGF T +KW FM Sbjct: 16 GLTGDNWTLADYVSRGGYEQFKRILAERMPRERIIDEVRASGLRGRGGAGFPTAVKWGFM 75 Query: 70 PKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 PK D P YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G +IY+ G Sbjct: 76 PK---DHPGQMYLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGYIYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E A+ + +GL+G + + G+D ++ HG GAYICGEETALLES+EGK+ Sbjct: 133 EIWAVYEQFGEAIRQAREAGLIGRDLQGSGFDFELHAFHGYGAYICGEETALLESMEGKR 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA GLYG PTT+NNVE++A VP I+ G Y+ GR N GTK+F +SG Sbjct: 193 GQPRFKPPFPATNGLYGQPTTINNVETLAYVPFIMAMGGDAYAALGRNNCPGTKIFCLSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + I+F EL+E GG++ G + AVIPGGSS P LPA M MDYD Sbjct: 253 DVARPGNYEVPLGISFPELLEL-AGGMKDGL-AMKAVIPGGSSSPVLPAETMMQLNMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LGT VIV++ + ++KA+ LS FY +ESCGQCTPCREGTGW++ ++ER+ Sbjct: 311 SIAKAGSMLGTGGVIVLNETRCMVKALLNLSRFYWNESCGQCTPCREGTGWLVSLIERIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 G + ++DLL V+ NI GRTICALGDAAA P++ IK+FR E I ++ RC Sbjct: 371 NGQGKTEDLDLLDNVAANIMGRTICALGDAAAMPVRSFIKHFRAEFEYHI-EHKRC 425 >gi|123500998|ref|XP_001327980.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein [Trichomonas vaginalis G3] gi|121910917|gb|EAY15757.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein [Trichomonas vaginalis G3] Length = 425 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/415 (45%), Positives = 274/415 (66%), Gaps = 2/415 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIFTN+ G+ L M RG W++ KI+ G+ +I++EV+ S LRGR GAG Sbjct: 10 MLNKRDRIFTNINGVDESDLQSCMKRGDWNDTQKIIANGKKYILDEVRKSELRGRSGAGL 69 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T KW + PHYL +N +ESEPGTCKDR I+++EP +IEG +AS+A+ H Sbjct: 70 LTYKKWEEI-LTSKQLPHYLCINGNESEPGTCKDRQILQNEPQKIIEGAFLASYALDVHR 128 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVRG + +E + LQ A+DE + L+G N+K G+D +I VH GAGAY+CGE+T L+ Sbjct: 129 CYVYVRGHYTKEAKRLQLAIDEAKKANLIGKNNKFGWDFEINVHPGAGAYVCGEQTGLMT 188 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG G PR KPP P GL+ CPT V+NVE+I+ + +I RRG W+S G +RG K Sbjct: 189 SLEGNPGTPRQKPPQPFEKGLFQCPTVVDNVETISTISSICRRGGKWFSSLGIPGSRGPK 248 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++ ISGHVN PC VEE++ ++ ELI+ H G+RGGWDNL +IPGG+S P + Q + Sbjct: 249 IYQISGHVNRPCIVEETLGMSLKELIDVHGSGVRGGWDNLQCIIPGGTSCPPITKEQAKN 308 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI+ +D + ++GSGLGT +++V+D + DI++ R++ FYK E CGQC C EGT M Sbjct: 309 AILGFDEMSKIGSGLGTGSLVVIDNTADIVEVYRRIANFYKDECCGQCKQCVEGTETMAE 368 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + +++ +G K ++ L EV+ ++ + IC+ A+ PI+G +K F+ + ER Sbjct: 369 IFDKIARGKGTKDDVKHLEEVAFGMK-KYICSFSVGASDPIRGFLKVFKNKLLER 422 >gi|330826547|ref|YP_004389850.1| NADH-quinone oxidoreductase subunit F [Alicycliphilus denitrificans K601] gi|329311919|gb|AEB86334.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus denitrificans K601] Length = 449 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/405 (53%), Positives = 275/405 (67%), Gaps = 12/405 (2%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65 GL G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF TG+K Sbjct: 32 GLNGSNWSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + H LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G + Y+ Sbjct: 92 WSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + E +AA++E A+G LGSN + + HHG GAYICGEETALLESLEG Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLESLEG 210 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+ Sbjct: 211 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFSV 270 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F +L+E GG+R G L AVIPGGSS P LPA M MD Sbjct: 271 SGDVERPGNYEIPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIMMECTMD 328 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ RV+ R Sbjct: 329 YDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWRVVHR 388 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + G + +I++L V+ NI GRTICALGDAAA P++ +IK+FR Sbjct: 389 IQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFR 433 >gi|312200062|ref|YP_004020123.1| NADH-quinone oxidoreductase F subunit [Frankia sp. EuI1c] gi|311231398|gb|ADP84253.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EuI1c] Length = 436 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 202/391 (51%), Positives = 263/391 (67%), Gaps = 5/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L G + +V G D +I VK SGLRGRGGAGF TGMKWSF+P+ +PH Sbjct: 18 TLETYAEHGGYSSVQAAFNLGPDAVIKMVKDSGLRGRGGAGFPTGMKWSFIPQ-GDGKPH 76 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADE EPGTCKD +M +PH+LIEG ++ASFA+ A+ A++YVRGE I L+ Sbjct: 77 YLVVNADEGEPGTCKDAPLMMTDPHSLIEGIIVASFAVRANRAYVYVRGELIHAARRLRN 136 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E Y +G LG+N G+D+D+++H GAGAYICGEETALL+SLEG++GQPRL+PPFPA Sbjct: 137 AVAEAYRAGYLGTNILGSGFDLDLVIHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 196 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT +NNVE+IA VP I+ G W+ G E + G K++S+SGHV P E Sbjct: 197 THGLYNSPTVINNVETIASVPFIVNNGVEWFRSMGTEKSPGPKIYSLSGHVTRPGQYEAP 256 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M T EL+E GG+RGG L A PGGSS P L A + +D+DG+ GS LGT Sbjct: 257 MGTTLRELLEL-AGGVRGG-RALKAWTPGGSSTPMLTAEHLD-VPLDFDGVAAAGSLLGT 313 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AA+++MD + D++ + RL+ FY HESCG+CTPCREGT W+++++ R+ +G R+ID Sbjct: 314 AALMIMDDTVDMVPVVRRLTQFYAHESCGKCTPCREGTPWLVQILSRMERGQGDPRDIDT 373 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L + NI GR CAL D A PI IK+F Sbjct: 374 LTDACDNIFGRAFCALADGAVSPIVSGIKHF 404 >gi|33597906|ref|NP_885549.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella parapertussis 12822] gi|33574335|emb|CAE38671.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella parapertussis] Length = 455 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/403 (54%), Positives = 271/403 (67%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + + RG ++ + KIL G + +I EVKASGLRGRGGAGF TG+KWSFMP+ + Sbjct: 48 LQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N+DE EPGT KDRDI+R PH +IEG VIA++A+G + Y+ GE E + Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMVIAAYAMGISVGYNYIHGEIFEVYERFE 166 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++E A+G LG + LG D +H HG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 167 EALEEARAAGFLG-DKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTKLFSISG V P E Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNYE 285 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M F +L+E GG+RGG L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 286 IPMGTPFSKLLEL-AGGMRGG-RKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSML 343 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + ++ Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPEDL 403 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 D+L V+ NI GRTICALGDAAA P++ IK+FR I+ Sbjct: 404 DMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446 >gi|89900291|ref|YP_522762.1| NADH-quinone oxidoreductase subunit F [Rhodoferax ferrireducens T118] gi|89345028|gb|ABD69231.1| NADH-quinone oxidoreductase, F subunit [Rhodoferax ferrireducens T118] Length = 458 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/428 (51%), Positives = 281/428 (65%), Gaps = 21/428 (4%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR--------------DWIINEVKASGL 52 +I+ +L G L D SRG + + KIL K D +I VK SGL Sbjct: 27 QIYADLNG-SNWHLKDYESRGGYQALRKILAKNSGVTADDVTASGMTPDQVIAVVKESGL 85 Query: 53 RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 RGRGGAGF TG+KWSFMP+ + + YLV N+DE EPGTCKDR+I++ PH +IEG +IA Sbjct: 86 RGRGGAGFPTGLKWSFMPRQYAGQ-KYLVCNSDEGEPGTCKDREILQFNPHMVIEGMIIA 144 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAY 170 ++A+G + Y+ GE + + A++E A+GLLG+N LG D +H HG GAY Sbjct: 145 AYAMGIAVGYNYIHGEIFKTYLRFEEAIEEARAAGLLGNNI-LGSDFSFQLHAAHGYGAY 203 Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230 ICGEET+LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y Sbjct: 204 ICGEETSLLESLEGKKGQPRYKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLA 263 Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 G+ N+ GTK+FSISG V P E M F +L+E GG+R G L AVIPGGSS Sbjct: 264 CGKPNSGGTKIFSISGDVELPGNYEVPMGTPFSQLLEL-AGGVRSG-RQLKAVIPGGSSS 321 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 P LP M MDYD + + GS LG+ AVIV+D S ++K++ RLS FY HESCGQCTP Sbjct: 322 PVLPGSIMMDCTMDYDSIAKAGSMLGSGAVIVLDDSRCMVKSLQRLSYFYMHESCGQCTP 381 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 CREGTGW+ RV++R+ G ++DLL V++NI GRTICALGDAAA P++ +IK+FRP Sbjct: 382 CREGTGWLSRVVDRIENGHGHVTDLDLLDNVAENIMGRTICALGDAAAMPVRAMIKHFRP 441 Query: 411 LIEERIDQ 418 E ++ Sbjct: 442 EFEYHVEH 449 >gi|325983284|ref|YP_004295686.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212] gi|325532803|gb|ADZ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212] Length = 425 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/369 (54%), Positives = 260/369 (70%), Gaps = 6/369 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I EVK S LRGRGGAGF TG+KWSFMPK + Y+V N+DE EPGT KDRDI+R+ P Sbjct: 47 VIEEVKKSALRGRGGAGFPTGLKWSFMPK-GYEGDKYIVCNSDEGEPGTFKDRDILRYNP 105 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVD 160 H LIEG +IA++A+G + Y+ GE E ++ AV+E ++G LG+N LG + Sbjct: 106 HILIEGMIIAAYAMGVKAGYNYIHGEIWETYERMEDAVEEARSAGYLGNNI-LGSTFSFQ 164 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + HHG GAYICGEETALLES+EGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I Sbjct: 165 LYNHHGYGAYICGEETALLESIEGKKGQPRFKPPFPANYGLYGKPTTINNTETFASVPWI 224 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 +R Y G+ NN GTK+FS+SGHVN P E + +F +L+E GG+RGG L Sbjct: 225 IRNSGEKYLQLGKPNNGGTKIFSVSGHVNKPGNYEIPLGTSFAKLLEL-AGGMRGG-RKL 282 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 IPGGSS+P LP M MDYD + + GS LG+ AVI+MD +T +++A+ RLS FY Sbjct: 283 KGCIPGGSSMPVLPGDIMMQTDMDYDSIAKAGSMLGSGAVIIMDETTCMVRALERLSYFY 342 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCGQCTPCREGTGW+ R++ R+ G + ++DLL ++ NI+GRTICALGDAAA P Sbjct: 343 YEESCGQCTPCREGTGWLYRIVNRIEHGKGRSEDLDLLDNIADNIQGRTICALGDAAAMP 402 Query: 401 IQGLIKNFR 409 ++ ++++FR Sbjct: 403 VRAMLQHFR 411 >gi|307730335|ref|YP_003907559.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1003] gi|307584870|gb|ADN58268.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1003] Length = 442 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/414 (50%), Positives = 278/414 (67%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSISG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSISG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG + AVIPGGSS P +P M +DYD Sbjct: 253 DVERPGNYEVPLGTPFAKLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 371 HGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|254251866|ref|ZP_04945184.1| NADH dehydrogenase [Burkholderia dolosa AUO158] gi|124894475|gb|EAY68355.1| NADH dehydrogenase [Burkholderia dolosa AUO158] Length = 436 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/415 (50%), Positives = 278/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDVMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + ++GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|319761767|ref|YP_004125704.1| NADH-quinone oxidoreductase, f subunit [Alicycliphilus denitrificans BC] gi|317116328|gb|ADU98816.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus denitrificans BC] Length = 449 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/405 (53%), Positives = 275/405 (67%), Gaps = 12/405 (2%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65 GL G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF TG+K Sbjct: 32 GLNGSNWSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + H LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G + Y+ Sbjct: 92 WSFMPRQFPRQKH-LVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + E +AA++E A+G LGSN + + HHG GAYICGEETALLESLEG Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLESLEG 210 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+ Sbjct: 211 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFSV 270 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F +L+E GG+R G L AVIPGGSS P LPA M MD Sbjct: 271 SGDVERPGNYEIPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIMMECTMD 328 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ RV+ R Sbjct: 329 YDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWRVVHR 388 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + G + +I++L V+ NI GRTICALGDAAA P++ +IK+FR Sbjct: 389 IQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFR 433 >gi|295676042|ref|YP_003604566.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002] gi|295435885|gb|ADG15055.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002] Length = 441 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A++E +G LG N G+ + HHG GAYICGEETALLES+EGKK Sbjct: 133 EIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+SG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M MDYD Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDMMMQTDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 371 HGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|86739256|ref|YP_479656.1| NADH-quinone oxidoreductase,subunit F [Frankia sp. CcI3] gi|86566118|gb|ABD09927.1| NADH dehydrogenase subunit F [Frankia sp. CcI3] Length = 443 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/370 (54%), Positives = 258/370 (69%), Gaps = 5/370 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I VK SGLRGRGGAGF TGMKW F+P+ RPHYLV+NADE EPGTCKD +M Sbjct: 40 DDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGRPHYLVINADEGEPGTCKDAPLMMA 98 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH+LIEG +IA++A+ A AF+Y+RGE I LQAAV E Y +G LG + G+D+ Sbjct: 99 DPHSLIEGIIIAAYAVRAGRAFVYLRGELIHAARRLQAAVAEAYRAGYLGRDILGSGFDL 158 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY PT VNNVE+IA VP Sbjct: 159 DLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTVVNNVETIASVPY 218 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ G W+ GRE + G K++S+SGHV P E M T EL++ GG+RGG Sbjct: 219 IVNYGVDWFRSMGRERSPGPKIYSLSGHVTRPGQYEAPMGTTLRELLDL-AGGVRGG-HG 276 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A PGGSS P L A + A +D++G++E GS LGTAA+++MD + D++K + RL+ F Sbjct: 277 LKAWTPGGSSTPMLTAEHLD-APLDFEGMQEAGSLLGTAALMIMDDTVDMLKVVRRLTQF 335 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y HESCG+CTPCREGT WM++++ R+ +G ++D L + NI GR CAL D A Sbjct: 336 YAHESCGKCTPCREGTTWMVQILSRMERGQGDAEDVDTLVDACDNIFGRAFCALADGATS 395 Query: 400 PIQGLIKNFR 409 PI IK FR Sbjct: 396 PIVSGIKYFR 405 >gi|58582853|ref|YP_201869.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624719|ref|YP_452091.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577691|ref|YP_001914620.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427447|gb|AAW76484.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368659|dbj|BAE69817.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522143|gb|ACD60088.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 444 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|323525441|ref|YP_004227594.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1001] gi|323382443|gb|ADX54534.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1001] Length = 442 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSISG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSISG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M +DYD Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|29654734|ref|NP_820426.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 493] gi|161830422|ref|YP_001597288.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 331] gi|29542002|gb|AAO90940.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii RSA 493] gi|161762289|gb|ABX77931.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 331] Length = 422 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 207/405 (51%), Positives = 273/405 (67%), Gaps = 10/405 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L S G + + KIL++ + IINE+K S LRGRGGAGF TG+KWSF+P+ D+ Sbjct: 18 TLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKWSFIPR---DK 74 Query: 77 P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P Y++ N+DESEPGT KDRDI+R PH ++EG IA + +GA + ++RGEF + Sbjct: 75 PGEKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLRGEFWEPFD 134 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ + +GL+G N G D++I H AGAYICGEETAL+ SLEGK+G PR KP Sbjct: 135 RCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGKRGWPRFKP 194 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPAN GLY P+ +NN E+ A VP IL +G W++ G N GTK+FS+SGHV P Sbjct: 195 PFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVSGHVAKPGN 254 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + I F +L+ GG+R G L AVIPGGSS+P LPA M AIM +DGL E GS Sbjct: 255 YEVPLGIPFADLL-ALAGGMREG-SELKAVIPGGSSMPVLPAEVMMKAIMSFDGLVEAGS 312 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+ V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ KG KR Sbjct: 313 MLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRIEKGEGTKR 372 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L V+K IEGRTICA G+AAAWP+ G++K+F E + Sbjct: 373 DIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTH 417 >gi|167627158|ref|YP_001677658.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597159|gb|ABZ87157.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 424 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/404 (51%), Positives = 263/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+IMR+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNTPGQ-KYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLGSN K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLYG PT +NN E+ A P IL+ G W+ G E + GTKLF IS Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV + +E + F +++E CGG+R G L AVIPGGSS L +M MDY Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLE-MCGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + E GS LG+ AV+V+D +T ++K + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFR 407 >gi|241667720|ref|ZP_04755298.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876264|ref|ZP_05248974.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842285|gb|EET20699.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 424 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/404 (51%), Positives = 263/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+IMR+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNTPGQ-KYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLGSN K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLYG PT +NN E+ A P IL+ G W+ G E + GTKLF IS Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV + +E + F +++E CGG+R G L AVIPGGSS L +M MDY Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLE-MCGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + E GS LG+ AV+V+D +T ++K + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGDGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFR 407 >gi|134301251|ref|YP_001121219.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. tularensis WY96-3418] gi|134049028|gb|ABO46099.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. tularensis WY96-3418] Length = 424 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/404 (51%), Positives = 265/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC+LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICSLGDAAAWPVQSYIDKFR 407 >gi|332184791|gb|AEE27045.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida 3523] Length = 424 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGGIR G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGIRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407 >gi|294788075|ref|ZP_06753319.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC 29453] gi|294484368|gb|EFG32051.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC 29453] Length = 433 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/404 (51%), Positives = 266/404 (65%), Gaps = 8/404 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L++ RG + + KIL + + +I+E+KASGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLAEYQVRGGYQALRKILTEKIPQTDVIDEMKASGLRGRGGAGFPTGLKWSFMPRSFPGA 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYNYIHGEIFEGFQLF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ E +G LG N +G + ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EKALQEARDAGFLGKNI-MGSEFSFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G ++ G E+ GTKLFSISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLFSISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E ++ F EL+ GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVALGTPFSELL-AMAGGVRGG-KKLKAVIPGGSSAPVLPADIMMSCNMDYDSIAKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 318 LGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIAMGKGRPED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +DLL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 378 LDLLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIEH 421 >gi|325520402|gb|EGC99520.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. TJI49] Length = 436 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 211/415 (50%), Positives = 278/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVVPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + ++GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|209518510|ref|ZP_03267331.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160] gi|209501055|gb|EEA01090.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160] Length = 442 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A++E +G LG N G+ + HHG GAYICGEETALLES+EGKK Sbjct: 133 EIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+SG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M MDYD Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDMMMQTDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRVVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ ++ ++DLL V++NI GRTICALGDAAA P++G++K+F E + H Sbjct: 371 HGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHFWDEFEYHVAHKH 424 >gi|296160634|ref|ZP_06843449.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1] gi|295889160|gb|EFG68963.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1] Length = 442 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSI+G Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSIAG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M MDYD Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGVRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|134296428|ref|YP_001120163.1| NADH-quinone oxidoreductase, F subunit [Burkholderia vietnamiensis G4] gi|134139585|gb|ABO55328.1| NADH dehydrogenase subunit F [Burkholderia vietnamiensis G4] Length = 436 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M +DY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|254522409|ref|ZP_05134464.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp. SKA14] gi|219720000|gb|EED38525.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp. SKA14] Length = 446 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 212/417 (50%), Positives = 272/417 (65%), Gaps = 8/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ + +I VKASGLRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ VP I+R G W+ G N G K FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPKCFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFD+L+E GG+R G L IPGG S+P L A +++G M Sbjct: 259 VSGCVQNGGNFEVPLGTTFDDLLEM-AGGLRPG-RTLKGAIPGGVSMPVLTAAELKGLPM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD ++ +GSGLG+ AV+V+D S +K R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTIRALGSGLGSGAVVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 377 RIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433 >gi|91782617|ref|YP_557823.1| putative NADH dehydrogenase I (chain F), NuoF [Burkholderia xenovorans LB400] gi|91686571|gb|ABE29771.1| NADH dehydrogenase subunit F [Burkholderia xenovorans LB400] Length = 442 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSI+G Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSIAG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M MDYD Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|153207266|ref|ZP_01946030.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706359|ref|YP_001423961.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway 5J108-111] gi|212212187|ref|YP_002303123.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212] gi|212218217|ref|YP_002305004.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154] gi|120576754|gb|EAX33378.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154355645|gb|ABS77107.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway 5J108-111] gi|212010597|gb|ACJ17978.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212] gi|212012479|gb|ACJ19859.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154] Length = 422 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 207/405 (51%), Positives = 272/405 (67%), Gaps = 10/405 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L S G + + KIL++ + IINE+K S LRGRGGAGF TG+KWSF+P+ D+ Sbjct: 18 TLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKWSFIPR---DK 74 Query: 77 P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P Y++ N+DESEPGT KDRDI+R PH ++EG IA + +GA + ++RGEF Sbjct: 75 PGEKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLRGEFWEPFN 134 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ + +GL+G N G D++I H AGAYICGEETAL+ SLEGK+G PR KP Sbjct: 135 RCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGKRGWPRFKP 194 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPAN GLY P+ +NN E+ A VP IL +G W++ G N GTK+FS+SGHV P Sbjct: 195 PFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVSGHVAKPGN 254 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + I F +L+ GG+R G L AVIPGGSS+P LPA M AIM +DGL E GS Sbjct: 255 YEVPLGIPFADLL-ALAGGMREG-SELKAVIPGGSSMPVLPAEVMMKAIMSFDGLVEAGS 312 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+ V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ KG KR Sbjct: 313 MLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRIEKGEGTKR 372 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L V+K IEGRTICA G+AAAWP+ G++K+F E + Sbjct: 373 DIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTH 417 >gi|33592012|ref|NP_879656.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis Tohama I] gi|33602811|ref|NP_890371.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella bronchiseptica RB50] gi|33571656|emb|CAE41149.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis Tohama I] gi|33577253|emb|CAE35810.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella bronchiseptica RB50] gi|332381428|gb|AEE66275.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis CS] Length = 455 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 217/403 (53%), Positives = 270/403 (66%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + + RG ++ + KIL G + +I EVKASGLRGRGGAGF TG+KWSFMP+ + Sbjct: 48 LQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ GE E + Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYERFE 166 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++E A+G LG + LG D +H HG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 167 EALEEARAAGFLG-DKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTKLFSISG V P E Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNYE 285 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M F +L+E GG+RGG L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 286 IPMGTPFSKLLEL-AGGMRGG-RKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSML 343 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + ++ Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPEDL 403 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 D+L V+ NI GRTICALGDAAA P++ IK+FR I+ Sbjct: 404 DMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446 >gi|289665178|ref|ZP_06486759.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667375|ref|ZP_06488450.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 444 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|21243427|ref|NP_643009.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78048404|ref|YP_364579.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624673|ref|ZP_06703343.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666772|ref|ZP_06732006.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924680|ref|ZP_08186118.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118] gi|21108980|gb|AAM37545.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78036834|emb|CAJ24527.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601029|gb|EFF45096.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603433|gb|EFF46850.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544886|gb|EGD16231.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118] Length = 444 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|107023183|ref|YP_621510.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia AU 1054] gi|116690265|ref|YP_835888.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia HI2424] gi|105893372|gb|ABF76537.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia AU 1054] gi|116648354|gb|ABK08995.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia HI2424] Length = 436 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E +AA+DE A+G LG N + + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNIMGTEFSFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+SG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M +DYD Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 371 HGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|21231955|ref|NP_637872.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767918|ref|YP_242680.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|21113686|gb|AAM41796.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573250|gb|AAY48660.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 444 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPGDVIEMVKASNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|163855992|ref|YP_001630290.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii DSM 12804] gi|163259720|emb|CAP42021.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii] Length = 455 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 214/403 (53%), Positives = 272/403 (67%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L D + RG ++ + KIL G + +I EVKASGLRGRGGAGF TG+KWSFMP+ + Sbjct: 48 LQDYVKRGGYEALRKILSSGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ GE + + Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYQRFE 166 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++E A+G LG N LG + +H HG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 167 EALEEARAAGFLGDNI-LGSEFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FSI+G V P E Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKVFSITGDVERPGNYE 285 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F +L+E GG+RGG L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 286 IPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIMMDITMDYDAIAKAGSML 343 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G ++ ++ Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIEHGQGRQEDL 403 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL V+ NI GRTICALGDAAA P++G +K++R I+ Sbjct: 404 DLLDSVAGNIMGRTICALGDAAAMPVRGFLKHYRDEFAHHIEH 446 >gi|62261001|gb|AAX77952.1| unknown protein [synthetic construct] Length = 459 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 209/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 33 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 92 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 93 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 151 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 152 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 211 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 212 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 271 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 272 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 329 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 330 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 389 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 390 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 433 >gi|56707216|ref|YP_169112.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110669686|ref|YP_666243.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis FSC198] gi|187930993|ref|YP_001890977.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|224456277|ref|ZP_03664750.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254371432|ref|ZP_04987433.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|254874054|ref|ZP_05246764.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603708|emb|CAG44669.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320019|emb|CAL08052.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis FSC198] gi|151569671|gb|EDN35325.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|187711902|gb|ACD30199.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840053|gb|EET18489.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158324|gb|ADA77715.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis NE061598] Length = 424 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407 >gi|325915544|ref|ZP_08177855.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937] gi|325538260|gb|EGD09945.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937] Length = 429 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF TG+K Sbjct: 6 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 65 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 66 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 123 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 124 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 183 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 184 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 243 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 244 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 301 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 302 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 361 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 362 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 406 >gi|325921406|ref|ZP_08183263.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865] gi|325548164|gb|EGD19161.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865] Length = 444 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFENFELALVDAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RTLKGVVPGGVSMPVLKADQVAGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|188991034|ref|YP_001903044.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. B100] gi|167732794|emb|CAP50988.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris] Length = 444 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|325130975|gb|EGC53702.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis OX99.30304] Length = 431 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 266/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + ++GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKVGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|332968230|gb|EGK07307.1| NADH-quinone oxidoreductase subunit F [Kingella kingae ATCC 23330] Length = 433 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/404 (51%), Positives = 265/404 (65%), Gaps = 8/404 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L+ +RG + + KIL + + II+E+KASGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLAAYQARGGYQALRKILTEKIAQTDIIDEIKASGLRGRGGAGFPTGLKWSFMPRSFPG- 80 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 81 AKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYNYIHGEIFEGFQLF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ E +G LG N +G + ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EKALQEARDAGFLGKNI-MGSEFSFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G ++ G E+ GTKLFSISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLFSISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E ++ F EL+ GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVALGTPFSELL-AMAGGVRGG-KKLKAVIPGGSSAPVLPADIMMSCNMDYDSIAKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD ++KA+ RL+ FY ESCGQCTPCREGTGW+ RV+ R+ G + + Sbjct: 318 LGSGAVIVMDEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRVVHRIATGKGRPDD 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++LL V N+ GRTICAL DAA +P++ K+FR E I Sbjct: 378 LELLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIKH 421 >gi|299138537|ref|ZP_07031716.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp. MP5ACTX8] gi|298599783|gb|EFI55942.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp. MP5ACTX8] Length = 444 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/415 (49%), Positives = 270/415 (65%), Gaps = 5/415 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+ ++ + +G+ + + + V K +E+G +WI+NE+KASGLRGRGGAGF TG Sbjct: 9 DEVKVVSRRFGMGAAEIDKYVELDGYKAVQKAIEQGPEWIVNEMKASGLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PKV S++P Y++VN DESEPGTCKD I H+PH +IEG +IA AIGA FI Sbjct: 69 MKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAIIEGTMIAGLAIGAKMGFI 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGE+ + ++ AV + YA G LG N K G D DII GAGAY GEE+AL+ES Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGFLGKNIFGKEGVDFDIITQTGAGAYEVGEESALMES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G PR+KPPFPA VGLYG PT +NN E+IA P IL G Y+ G E N GT+L Sbjct: 188 LEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIANAPHILLMGGEAYAKLGSERNGGTRL 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ISGHV P E M + + I + GGI+GG L AV+PGGSS P L A ++ Sbjct: 248 FGISGHVERPGVYELPMGYSLRKAIYEVAGGIKGG-KQLKAVVPGGSSCPVLKADEIDVG 306 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D + + G+ LG+ ++V+D S I++ R FY+HESCG C PCREGT W+ + Sbjct: 307 -LDFDQMGKAGTMLGSGGIVVLDESVSIVEFALRTIRFYQHESCGWCIPCREGTDWLKKT 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + R G K++ID + +++N+ GRT C LGDAAA P G IK FR EE + Sbjct: 366 LTRFHAGGGNKKDIDNIQYLAENMLGRTFCPLGDAAAMPTIGFIKKFRSEFEEYL 420 >gi|261400476|ref|ZP_05986601.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970] gi|269209735|gb|EEZ76190.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970] Length = 431 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG D++ + HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDLEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|78067041|ref|YP_369810.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. 383] gi|254247662|ref|ZP_04940983.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184] gi|77967786|gb|ABB09166.1| NADH dehydrogenase subunit F [Burkholderia sp. 383] gi|124872438|gb|EAY64154.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184] Length = 436 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M +DY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|255067286|ref|ZP_05319141.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256] gi|255048437|gb|EET43901.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256] Length = 431 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + +IL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYSALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|170733604|ref|YP_001765551.1| NADH-quinone oxidoreductase,subunit F [Burkholderia cenocepacia MC0-3] gi|169816846|gb|ACA91429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia MC0-3] Length = 436 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M +DY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KRIKAVIPGGSSAPVIPGDIMMQTDLDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|261391778|emb|CAX49233.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F; NDH-1, chain F) [Neisseria meningitidis 8013] Length = 431 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|187477546|ref|YP_785570.1| NADH dehydrogenase I subunit F [Bordetella avium 197N] gi|115422132|emb|CAJ48656.1| NADH dehydrogenase I chain F [Bordetella avium 197N] Length = 455 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 218/413 (52%), Positives = 277/413 (67%), Gaps = 10/413 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L++ + RG ++ + KIL G + +I EVKASGLRGRGGAGF TG+KWS Sbjct: 38 LEGLDGDNWRLAEYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWS 97 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ G Sbjct: 98 FMPRAFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHG 156 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185 E E + A++E A+G LG + LG D + +H HG GAYICGEETALLESLEGK Sbjct: 157 EIFEVYERFEEALEEARAAGFLG-DKLLGSDFNFQLHAFHGYGAYICGEETALLESLEGK 215 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FSI+ Sbjct: 216 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKIFSIT 275 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E M F +L+E GG+RGG L AVIPGGSS P LPA + MDY Sbjct: 276 GDVERPGNYEIPMGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIIMECTMDY 333 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 334 DSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRI 393 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + ++D+L V+ NI GRTICALGDAAA P++ IK+FR I+ Sbjct: 394 ETGQGRAEDLDMLDTVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446 >gi|170696394|ref|ZP_02887523.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis C4D1M] gi|170138722|gb|EDT06921.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis C4D1M] Length = 442 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSISG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSISG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L++ GG+RGG + AVIPGGSS P +P M +DYD Sbjct: 253 DVERPGNYEVPLGTPFATLMDL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|241760593|ref|ZP_04758685.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114] gi|261379575|ref|ZP_05984148.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703] gi|241318774|gb|EER55300.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114] gi|284798049|gb|EFC53396.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703] Length = 431 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|241763293|ref|ZP_04761350.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN] gi|241367568|gb|EER61855.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN] Length = 451 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 216/417 (51%), Positives = 282/417 (67%), Gaps = 11/417 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60 +I+ +L G S+ D +RG + + IL K +D +I VK SGLRGRGGAGF Sbjct: 28 QIYADLNG-SNWSIKDYEARGGYHALRTILGKDGGEGLTQDQVIATVKESGLRGRGGAGF 86 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ + YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G Sbjct: 87 PTGLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGITV 145 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 + Y+ GE + E +AA++E A+G LG+ G+ + HHG GAYICGEETALL Sbjct: 146 GYNYIHGEIFQVYERFEAALEEARAAGYLGNGILGTGFSFQLHAHHGFGAYICGEETALL 205 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GT Sbjct: 206 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGT 265 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+SG V P E + F +L+E GG+R G L AVIPGGSS P LPA + Sbjct: 266 KIFSVSGDVERPGNYEIPLGTPFSKLLEL-AGGVRTG-RQLKAVIPGGSSSPVLPASIIM 323 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ Sbjct: 324 DCTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLW 383 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+++R+ +G + ++D+L V+ NI GRTICALGDAAA P++ +IK+FRP E I Sbjct: 384 RLVDRIHRGEGRPADMDVLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALI 440 >gi|158317831|ref|YP_001510339.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec] gi|158113236|gb|ABW15433.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec] Length = 447 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/382 (52%), Positives = 263/382 (68%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + + L + D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLV+NADE E Sbjct: 28 YQGLRRALAQSPDDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M+ +PH+LIEG VIA++A+ A+ AFIY+RGE I L+AAV E Y +G Sbjct: 87 PGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLRGELIHAGRRLRAAVAEAYRAGY 146 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG + G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY PT Sbjct: 147 LGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTV 206 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+IA VP I+ G W+ GRE G K++S+SGHV +P E M T EL++ Sbjct: 207 VNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLSGHVTHPGQYEAPMGTTLRELLD 266 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+ GG L A PGGSS P L A + +D++G++E GS LGTAA+++MD S Sbjct: 267 M-AGGVLGG-RKLKAWTPGGSSTPLLTADHLD-VPLDFEGVQEAGSLLGTAALMIMDDSV 323 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D++K + RL+ FY HESCG+CTPCREGT WM++++ R+ +G ++D L + NI G Sbjct: 324 DMLKIVRRLTQFYAHESCGKCTPCREGTTWMVQILSRMERGQGDPDDVDTLVDACDNIFG 383 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 R CAL D A PI IK FR Sbjct: 384 RAFCALADGATSPIVSGIKFFR 405 >gi|171316308|ref|ZP_02905529.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MEX-5] gi|171098534|gb|EDT43335.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MEX-5] Length = 436 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M +DY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|238023164|ref|ZP_04603590.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147] gi|237865547|gb|EEP66687.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147] Length = 431 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 261/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KI+ + +D IINE+K S LRGRGGAGF TG+KWSFMP+ + Sbjct: 22 TLDEYIKRGGYQALRKIISEKTPQDDIINELKTSNLRGRGGAGFPTGLKWSFMPRAFEGQ 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +I + +GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIILFNPHALIEGMIIGGYTMGASAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+ + + LLG N LG D ++ HHG GAY+CGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALAQAREANLLGQNI-LGSDFSFELFAHHGYGAYVCGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP ILR G ++ G E GTKLFSISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFILRDGGQTFADIGIEKAGGTKLFSISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F EL+ GG+RGG L AVIPGGSS P LPA + MDYD + + GS Sbjct: 260 EIPLGTPFAELL-AMAGGVRGG-KKLKAVIPGGSSAPVLPADIIMQINMDYDSIAKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 318 LGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIANGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V N+ GRTICAL DAA +P++G K+FR Sbjct: 378 LDLLDSVGNNMAGRTICALADAAVFPVRGFTKHFR 412 >gi|254368970|ref|ZP_04984983.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica FSC022] gi|157121891|gb|EDO66061.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica FSC022] Length = 424 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407 >gi|170698114|ref|ZP_02889194.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria IOP40-10] gi|172061204|ref|YP_001808856.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MC40-6] gi|170136972|gb|EDT05220.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria IOP40-10] gi|171993721|gb|ACB64640.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MC40-6] Length = 440 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M +DY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|59802067|ref|YP_208779.1| hypothetical protein NGO1746 [Neisseria gonorrhoeae FA 1090] gi|194099642|ref|YP_002002773.1| NuoF [Neisseria gonorrhoeae NCCP11945] gi|239999839|ref|ZP_04719763.1| NuoF [Neisseria gonorrhoeae 35/02] gi|240014998|ref|ZP_04721911.1| NuoF [Neisseria gonorrhoeae DGI18] gi|240017446|ref|ZP_04723986.1| NuoF [Neisseria gonorrhoeae FA6140] gi|240081585|ref|ZP_04726128.1| NuoF [Neisseria gonorrhoeae FA19] gi|240113867|ref|ZP_04728357.1| NuoF [Neisseria gonorrhoeae MS11] gi|240116598|ref|ZP_04730660.1| NuoF [Neisseria gonorrhoeae PID18] gi|240118822|ref|ZP_04732884.1| NuoF [Neisseria gonorrhoeae PID1] gi|240122067|ref|ZP_04735029.1| NuoF [Neisseria gonorrhoeae PID24-1] gi|240124361|ref|ZP_04737317.1| NuoF [Neisseria gonorrhoeae PID332] gi|240126573|ref|ZP_04739459.1| NuoF [Neisseria gonorrhoeae SK-92-679] gi|240129038|ref|ZP_04741699.1| NuoF [Neisseria gonorrhoeae SK-93-1035] gi|254494622|ref|ZP_05107793.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|260439641|ref|ZP_05793457.1| NuoF [Neisseria gonorrhoeae DGI2] gi|268595649|ref|ZP_06129816.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02] gi|268597681|ref|ZP_06131848.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19] gi|268599933|ref|ZP_06134100.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268602267|ref|ZP_06136434.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268604533|ref|ZP_06138700.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268682988|ref|ZP_06149850.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268685153|ref|ZP_06152015.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268687416|ref|ZP_06154278.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291042882|ref|ZP_06568623.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2] gi|293398107|ref|ZP_06642312.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae F62] gi|59718962|gb|AAW90367.1| putative NADH dehydrogenase I chain F [Neisseria gonorrhoeae FA 1090] gi|193934932|gb|ACF30756.1| NuoF [Neisseria gonorrhoeae NCCP11945] gi|226513662|gb|EEH63007.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|268549038|gb|EEZ44456.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02] gi|268551469|gb|EEZ46488.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19] gi|268584064|gb|EEZ48740.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268586398|gb|EEZ51074.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268588664|gb|EEZ53340.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268623272|gb|EEZ55672.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268625437|gb|EEZ57837.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268627700|gb|EEZ60100.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291013316|gb|EFE05282.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2] gi|291611370|gb|EFF40440.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae F62] gi|317165127|gb|ADV08668.1| hypothetical protein NGTW08_1711 [Neisseria gonorrhoeae TCDC-NG08107] Length = 433 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/404 (51%), Positives = 267/404 (66%), Gaps = 8/404 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVRRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFAHYIEH 421 >gi|254375044|ref|ZP_04990524.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548] gi|151572762|gb|EDN38416.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548] Length = 424 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407 >gi|118498236|ref|YP_899286.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. novicida U112] gi|118424142|gb|ABK90532.1| NADH dehydrogenase I, F subunit [Francisella novicida U112] Length = 424 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQKVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407 >gi|167569427|ref|ZP_02362301.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis C6786] Length = 436 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E +AA++E +G LG N G+ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIFEVYRRFEAALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+SG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M +DYD Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 371 HGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|15676170|ref|NP_273302.1| NADH dehydrogenase I chain F [Neisseria meningitidis MC58] gi|7225468|gb|AAF40700.1| NADH dehydrogenase I, F subunit [Neisseria meningitidis MC58] gi|316985174|gb|EFV64126.1| NADH oxidoreductase, F subunit [Neisseria meningitidis H44/76] gi|325141082|gb|EGC63585.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis CU385] gi|325199449|gb|ADY94904.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis H44/76] Length = 433 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|225077023|ref|ZP_03720222.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens NRL30031/H210] gi|224951580|gb|EEG32789.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens NRL30031/H210] Length = 431 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQVFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|206560698|ref|YP_002231463.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315] gi|198036740|emb|CAR52640.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315] Length = 436 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M +DY Sbjct: 252 GDVERPGNYEVPLGTPFAVLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|296313741|ref|ZP_06863682.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768] gi|296839664|gb|EFH23602.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768] Length = 431 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWI--INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + I I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQIDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL + + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|166712609|ref|ZP_02243816.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzicola BLS256] Length = 444 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/405 (51%), Positives = 270/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ +I VK S LRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKVSNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L V+PGG S+P L A Q+ G M Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|309379798|emb|CBX21574.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 431 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + +P I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSIPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|261378535|ref|ZP_05983108.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685] gi|269145085|gb|EEZ71503.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685] Length = 431 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL + + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|293603924|ref|ZP_06686339.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii ATCC 43553] gi|292817761|gb|EFF76827.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii ATCC 43553] Length = 455 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 216/403 (53%), Positives = 269/403 (66%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L D + RG ++ + KIL G + +I EVKASGLRGRGGAGF TG+KWSFMP+ + Sbjct: 48 LEDYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N+DE EPGT KDRDI+R PH +IEG IA+FA+G + Y+ GE E + Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAFAMGISVGYNYIHGEIFEVYERFE 166 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++E A+G LG + LG D +H HG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 167 EALEEARAAGFLG-DKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A VP I+R Y G+ NN GTKLFSI+G V P E Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNYE 285 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L+E GG+RGG L AVIPGGSS P LPA + MDYD + + GS L Sbjct: 286 IPLGTPFSTLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIIMECTMDYDSIAKAGSML 343 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + ++ Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPEDL 403 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL V+ NI GRTICALGDAAA P++G +K+FR I+ Sbjct: 404 DLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHIEH 446 >gi|121604335|ref|YP_981664.1| NADH-quinone oxidoreductase subunit F [Polaromonas naphthalenivorans CJ2] gi|120593304|gb|ABM36743.1| NADH dehydrogenase subunit F [Polaromonas naphthalenivorans CJ2] Length = 473 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 223/420 (53%), Positives = 285/420 (67%), Gaps = 13/420 (3%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60 +I NL G L D SRG + + KIL + D +I EVKA GLRGRGGAGF Sbjct: 37 QILANLDG-SNWHLGDYESRGGYQALRKILGQDGGAGLTPDQVIAEVKAGGLRGRGGAGF 95 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ + YLV N+DE EPGTCKDRDIM++ PH++IEG IA++A+G Sbjct: 96 PTGLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISV 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETAL 178 + Y+ GE + +AA+DE A+GLLG N LG + + +H HG GAYICGEET L Sbjct: 155 GYNYIHGEIFATYQRFEAALDEARAAGLLGDN-ILGSNFNFQLHAAHGFGAYICGEETGL 213 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN G Sbjct: 214 LESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGG 273 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK++S+SG V P E M F +L+E GG+R G L AVIPGGSS P LPA M Sbjct: 274 TKIYSVSGDVELPGNYEVPMGTPFAKLLEL-AGGVRKG-RTLKAVIPGGSSSPVLPASSM 331 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ Sbjct: 332 MECTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWL 391 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RV++R+ G+ ++ ++DLL V+ NI+GRTICALGDAAA P++ +IK++R E I + Sbjct: 392 WRVVDRIHNGLGRQSDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHYRHEFEAMIPK 451 >gi|317401993|gb|EFV82593.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54] Length = 455 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 214/403 (53%), Positives = 271/403 (67%), Gaps = 8/403 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L+D + RG ++ + KIL G + +I EVKASGLRGRGGAGF TG+KWSFMP+ + Sbjct: 48 LADYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ GE E + Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYERFE 166 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++E A+G LG + LG + + +H HG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 167 EALEEARAAGFLG-DRILGSEFNFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A VP I+R Y G+ NN GTKLFSI+G V P E Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNYE 285 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F L+E GG+RGG L AVIPGGSS P LPA M MDYD + + GS L Sbjct: 286 IPLGTPFSTLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIMMETTMDYDAIAKAGSML 343 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + ++ Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPEDL 403 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 D+L V+ NI GRTICALGDAAA P++G +K+FR I+ Sbjct: 404 DMLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHIEH 446 >gi|113867075|ref|YP_725564.1| NADH dehydrogenase chain F [Ralstonia eutropha H16] gi|113525851|emb|CAJ92196.1| NADH dehydrogenase chain F [Ralstonia eutropha H16] Length = 431 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 212/412 (51%), Positives = 279/412 (67%), Gaps = 8/412 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL GK+ L D + RG + + +IL + + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLDGKNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRTFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+G LG N G+D + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEEALEEARAAGFLGDNILGSGFDFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN GTK+FSISG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKLGKPNNGGTKIFSISG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG + AVIPGGSS P +P M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFAKLLEL-AGGMRGG-KRIKAVIPGGSSAPVVPGDLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E ++ Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422 >gi|285017797|ref|YP_003375508.1| NADH-quinone oxidoreductase chain f (nadh dehydrogenaseI chain f) (ndh-1, chain f) (nuo6) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473015|emb|CBA15520.1| probable nadh-quinone oxidoreductase chain f (nadh dehydrogenaseI chain f) (ndh-1, chain f) (nuo6). oxidoreductase protein [Xanthomonas albilineans] Length = 447 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/417 (50%), Positives = 273/417 (65%), Gaps = 8/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KIL++ + +I VK S LRGRGGAGF TG+K Sbjct: 22 VYTTLHYDTPWSYESYLKTGGYAALRKILDEKIPPEQVIEMVKQSNLRGRGGAGFPTGLK 81 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 82 WSFMPKNAPQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 139 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 140 RGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 199 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ G + N G K+FS Sbjct: 200 GKKGQPRYKPPFPANFGLYGKPSTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 259 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG++ G L IPGG S+P L A +++G M Sbjct: 260 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLKPG-RTLKGAIPGGVSMPVLKAEELKGLQM 317 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +G+GLG+ A++V+D S +K R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 318 DYDTLRALGTGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 377 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 378 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 434 >gi|311104663|ref|YP_003977516.1| NADH oxidoreductase (quinone) subunit F [Achromobacter xylosoxidans A8] gi|310759352|gb|ADP14801.1| NADH oxidoreductase (quinone), F subunit [Achromobacter xylosoxidans A8] Length = 455 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 218/418 (52%), Positives = 277/418 (66%), Gaps = 9/418 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFST 62 Q +I ++ G + L+D + RG ++ + KIL G + +I EVKASGLRGRGGAGF T Sbjct: 34 QPQIMADVDGANWR-LADYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPT 92 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ + YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Sbjct: 93 GLKWSFMPRAFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGY 151 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLE 180 Y+ GE E + A++E A+G LG + LG D +H HG GAYICGEETALLE Sbjct: 152 NYIHGEIFEVYERFEEALEEARAAGFLG-DKILGSDYSFQLHAFHGYGAYICGEETALLE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R Y G+ NN GTK Sbjct: 211 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSI+G V P E + F L+E GG+RGG L AVIPGGSS P LPA + Sbjct: 271 LFSITGDVERPGNYEIPLGTPFSTLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADVIME 328 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R Sbjct: 329 CTMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYR 388 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ R+ G + ++DLL V+ NI GRTICALGDAAA P++G +K+FR I+ Sbjct: 389 MVHRIENGHGRPEDLDLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHIEH 446 >gi|313669280|ref|YP_004049564.1| NADH dehydrogenase I chain F [Neisseria lactamica ST-640] gi|313006742|emb|CBN88212.1| NADH dehydrogenase I chain F [Neisseria lactamica 020-06] Length = 431 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++A+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 ESALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|325129044|gb|EGC51894.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis N1568] Length = 431 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMVGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|284034164|ref|YP_003384095.1| NADH-quinone oxidoreductase subunit F [Kribbella flavida DSM 17836] gi|283813457|gb|ADB35296.1| NADH-quinone oxidoreductase, F subunit [Kribbella flavida DSM 17836] Length = 433 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/368 (54%), Positives = 263/368 (71%), Gaps = 5/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ VK SGLRGRGGAGF TGMKWSF+P+ + +P YLVVNADESEPGTCKD +M P Sbjct: 41 VVTAVKDSGLRGRGGAGFPTGMKWSFIPQD-NPKPKYLVVNADESEPGTCKDIPLMLASP 99 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 HTL+EG +IAS+AI A AFIYVRGE + LQ AV+E A+GL+G++ GYD+D+ Sbjct: 100 HTLVEGVIIASYAIRASTAFIYVRGEVLHVIRRLQQAVEEAKAAGLIGTDILGSGYDLDV 159 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGCPT +NNVESIA VP I+ Sbjct: 160 IVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVESIASVPAII 219 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 + GA W+ G E ++G L+S+SGHV P E + IT +L++ GG+R G L Sbjct: 220 KNGADWFGSMGTEKSKGMTLYSLSGHVTRPGQYEAPLGITLRQLLDL-AGGVREG-HELK 277 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 PGGSS P L A + +DY+G+ +GS LGT A+ + D +T +++A+ R + FYK Sbjct: 278 FWTPGGSSTPLLTAEHLD-VPLDYEGVGSVGSMLGTKALQIFDDTTCVVRAVLRWTEFYK 336 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 HESCG+CTPCREGT W+++++ERL G +++++ L ++ NI GR+ CALGD A PI Sbjct: 337 HESCGKCTPCREGTWWLVQILERLEAGKGTEQDLETLLDLCDNILGRSFCALGDGATSPI 396 Query: 402 QGLIKNFR 409 I+ F+ Sbjct: 397 TSSIQYFK 404 >gi|325203363|gb|ADY98816.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240355] Length = 433 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLGEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG D + + HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|74317165|ref|YP_314905.1| NADH-quinone oxidoreductase subunit F [Thiobacillus denitrificans ATCC 25259] gi|74056660|gb|AAZ97100.1| NADH-quinone oxidoreductase, chain F [Thiobacillus denitrificans ATCC 25259] Length = 426 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/408 (50%), Positives = 269/408 (65%), Gaps = 9/408 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SL+ ++ G + + +++ + D II E+K S LRGRGGAGF TG+KWSFMP+ Sbjct: 22 SLATYVANGGYQALRRVVTEAVPGDDIIAEIKTSALRGRGGAGFPTGLKWSFMPRAFPGD 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N+DE EPGT KDRDI+R+ PH LIEG IA + +GA + Y+ GE + Sbjct: 82 -KYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYVLGARVGYNYIHGEIFEVYQIF 140 Query: 137 QAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A++E +G LG+N G D D+ HHG GAYICGEETALLES+EGKKGQPR KPP Sbjct: 141 ERALEEARQAGYLGAN-LFGTDFCFDLHAHHGYGAYICGEETALLESIEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E++A VP I++ G + G+ NN G KLFS+SGHVN P Sbjct: 200 FPASFGLYGKPTTINNTETLASVPWIVQHGGQAFLELGKPNNGGAKLFSVSGHVNRPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F EL+E GG+R G +L AVIPGGSS P LP M MD+D + + GS Sbjct: 260 EVPLGTPFTELLEM-AGGVRDG-RSLKAVIPGGSSAPVLPGHIMMETTMDFDSIAKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD + +++A+ RLS FY ESCGQCTPCREGTGWM RV+ R+ G + + Sbjct: 318 LGSGAVIVMDETVCMVRALERLSYFYYEESCGQCTPCREGTGWMYRVIHRIENGQGRPED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +DLL V+ I G TICALGDAAA P+Q +K+F E I ++ RC Sbjct: 378 MDLLNSVAGQIGGHTICALGDAAAMPVQSFLKHFGHEFEHHI-EHKRC 424 >gi|261856545|ref|YP_003263828.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus neapolitanus c2] gi|261837014|gb|ACX96781.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus neapolitanus c2] Length = 429 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/406 (51%), Positives = 267/406 (65%), Gaps = 7/406 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + G + KIL + D II E+K S LRGRGGAGF TG+KWSFMP+ + Sbjct: 17 TLESYLKTGGYSAWRKILAEKTDPALIIEELKTSNLRGRGGAGFPTGLKWSFMPRNAPGQ 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR-ERES 135 Y+V N+DESEPGT KDR I+ + PH L+EG IA + IGA + Y+RGEF Sbjct: 77 -KYVVCNSDESEPGTAKDRQILLNNPHALVEGMAIAGYTIGATVGYNYMRGEFTDLVFRR 135 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + AV E Y GLLG N + G D D+ GAGAYICGEETALLESLEGKKGQPR KPP Sbjct: 136 FETAVKEAYELGLLGKNLQGSGIDFDLYGSLGAGAYICGEETALLESLEGKKGQPRFKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPAN GLYG PTTVNN E+++ VP I+R G W++ G N+ G KLFS+SGHVN P Sbjct: 196 FPANFGLYGRPTTVNNTETLSSVPAIMRNGGQWFADLGVPNSGGLKLFSVSGHVNKPGVF 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M + F EL+ GG+R G L AVIPGG+S P +P M MDYD + + G+ Sbjct: 256 EIPMGLPFSELL-SMAGGVREG-RKLKAVIPGGTSTPVVPGSVMMQTNMDYDSIAKSGTF 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ +IV+D S +++A+ R+S FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 314 LGSGGLIVIDDSACMVEALRRISRFYYSESCGQCTPCREGTGWLYRMLTRVVEGKGAMAD 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ L +V+ IEGRTICALGDAAA P++ +K+FR E I+ H Sbjct: 374 LNRLDDVASKIEGRTICALGDAAAVPVRSFLKHFRHEFEYYIEHGH 419 >gi|89257085|ref|YP_514447.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica LVS] gi|115315442|ref|YP_764165.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|167009477|ref|ZP_02274408.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica FSC200] gi|169656768|ref|YP_001429364.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368321|ref|ZP_04984339.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica 257] gi|290952994|ref|ZP_06557615.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica URFT1] gi|295313814|ref|ZP_06804387.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica URFT1] gi|89144916|emb|CAJ80264.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica LVS] gi|115130341|gb|ABI83528.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134254129|gb|EBA53223.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica 257] gi|164551836|gb|ABU62408.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica FTNF002-00] Length = 424 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVNMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407 >gi|187923345|ref|YP_001894987.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans PsJN] gi|187714539|gb|ACD15763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans PsJN] Length = 442 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS++G Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSVAG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RG + AVIPGGSS P +P M MDYD Sbjct: 253 DVERPGNYEIPLGTPFSTLMEL-AGGMRG-VKKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|325135049|gb|EGC57677.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M13399] gi|325145239|gb|EGC67518.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240013] gi|325145310|gb|EGC67588.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240013] gi|325205331|gb|ADZ00784.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M04-240196] Length = 433 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|149927546|ref|ZP_01915800.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter sp. MED105] gi|149823819|gb|EDM83045.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter sp. MED105] Length = 420 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/412 (49%), Positives = 273/412 (66%), Gaps = 12/412 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L +RG + + KIL +G ++ +I EVK S LRGRGGAGF TG+KWS Sbjct: 3 LAGLDGSNWDLKGYEARGGYKALRKILTEGISQEDVIAEVKKSALRGRGGAGFPTGLKWS 62 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YL N+DE EPGT KDRDI+R+ PH++IEG IA++A+G + Y+ G Sbjct: 63 FMPRQFPGQ-KYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGISVGYNYIHG 121 Query: 128 EFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 E E + A+++ A+G LG N SK + + H G GAYICGEETAL+ES+EG Sbjct: 122 EIWETYERFEEALEQARAAGYLGDNIMGSKFSFQLH--AHQGYGAYICGEETALIESIEG 179 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP I++ G W+ G+ NN GTK+FSI Sbjct: 180 KKGQPRFKPPFPASYGIYGKPTTINNTETFAAVPFIIQNGGDWFLELGKPNNGGTKIFSI 239 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E GG++GG + AVIPGGSS+P LP M MD Sbjct: 240 SGDVEKPGNYEIPLGTPFATLLEM-AGGMKGG-RKIKAVIPGGSSMPVLPGDVMMATDMD 297 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 298 YDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRIINR 357 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + G + ++D+L ++ NI+GRTICALGDAAA P++ +K+F E I Sbjct: 358 IEHGEGRPEDLDMLNSIADNIQGRTICALGDAAAMPVRAFLKHFHEEFEHHI 409 >gi|165918808|ref|ZP_02218894.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 334] gi|165917532|gb|EDR36136.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 334] Length = 422 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/403 (50%), Positives = 270/403 (66%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L S G + + KIL++ + IINE+K S LRGRGGAGF TG+KWSF+P+ + Sbjct: 18 TLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKWSFIPRDKTGE 77 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N+DESEPGT KDRDI+R PH ++EG IA + +GA + ++RGEF Sbjct: 78 -KYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLRGEFWEPFNRC 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + +GL+G N G D++I H AGAYICGEETAL+ SLEGK+G PR KPPF Sbjct: 137 EQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGKRGWPRFKPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN GLY P+ +NN E+ A VP IL +G W++ G N GTK+FS+SGHV P E Sbjct: 197 PANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVSGHVAKPGNYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + I F +L+ GG+R G L AVIPGGSS+P LPA M AIM +DGL E GS L Sbjct: 257 VPLGIPFADLL-ALAGGMREG-SELKAVIPGGSSMPVLPAEVMMKAIMSFDGLVEAGSML 314 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ KG KR+I Sbjct: 315 GSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRIEKGEGTKRDI 374 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L V+K IEGRTICA G+AAAWP+ G++K+F E + Sbjct: 375 EQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTH 417 >gi|261364352|ref|ZP_05977235.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996] gi|288567616|gb|EFC89176.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996] Length = 433 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + +IL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EVALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIIHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|254805712|ref|YP_003083933.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14] gi|254669254|emb|CBA08142.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14] Length = 433 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMVGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|167836054|ref|ZP_02462937.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis MSMB43] Length = 436 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWRLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185 E +AA+DE +G LG + +G D +H HG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARRAGFLG-DKIMGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGVRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|115352333|ref|YP_774172.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria AMMD] gi|115282321|gb|ABI87838.1| NADH dehydrogenase subunit F [Burkholderia ambifaria AMMD] Length = 436 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RG + AVIPGGSS P +P M +DY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGA-RKIKAVIPGGSSAPVIPGDIMMQTDLDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|83720620|ref|YP_441619.1| NADH-quinone oxidoreductase subunit F [Burkholderia thailandensis E264] gi|167580427|ref|ZP_02373301.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis TXDOH] gi|167618536|ref|ZP_02387167.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis Bt4] gi|257139685|ref|ZP_05587947.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis E264] gi|83654445|gb|ABC38508.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis E264] Length = 436 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE +G LG +G D ++ HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFELHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|126439968|ref|YP_001058343.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 668] gi|167918265|ref|ZP_02505356.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei BCC215] gi|126219461|gb|ABN82967.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 668] Length = 436 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE +G LG +G D + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + +F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEIPLGTSFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|218767064|ref|YP_002341576.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491] gi|121051072|emb|CAM07342.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491] gi|319411271|emb|CBY91678.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F; NDH-1, chain F) [Neisseria meningitidis WUE 2594] Length = 433 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL + + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|167562182|ref|ZP_02355098.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis EO147] Length = 436 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E +AA++E +G LG + G+ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIFEVYRRFEAALEEARRAGFLGDDIMGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+SG Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E GG+RGG + AVIPGGSS P +P M +DYD Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 371 HGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|237811587|ref|YP_002896038.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei MSHR346] gi|237505537|gb|ACQ97855.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei MSHR346] Length = 436 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/415 (50%), Positives = 275/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + YV G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYVHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE +G LG +G D + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|254373577|ref|ZP_04989063.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida GA99-3549] gi|151571301|gb|EDN36955.1| NADH dehydrogenase I [Francisella novicida GA99-3549] Length = 424 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/404 (51%), Positives = 263/404 (65%), Gaps = 6/404 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ + Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G + L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D + +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETACMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407 >gi|183981493|ref|YP_001849784.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium marinum M] gi|183174819|gb|ACC39929.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium marinum M] Length = 448 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/391 (52%), Positives = 269/391 (68%), Gaps = 7/391 (1%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESE 88 ++K L G D +I VK SGLRGRGGAGFSTG KWSF+P+ + +PHYLVVNADESE Sbjct: 36 LEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFIPQGDAGPAAKPHYLVVNADESE 95 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M PH L+EG +IA++AI A AFIYVRGE + LQ AV E YA+GL Sbjct: 96 PGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGL 155 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGCPT Sbjct: 156 LGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTV 215 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT EL++ Sbjct: 216 INNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD 275 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + GGIR G L PGGSS P L + +DY+G+ +GS LGT A+ + D +T Sbjct: 276 -YAGGIRAG-HQLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGGVGSMLGTKALEIFDETT 332 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FYKHESCG+CTPCREGT W+ ++ RL G + +ID L ++S +I G Sbjct: 333 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARLETGKGTREDIDKLLDISDSILG 392 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ CALGD AA P+ IK+F+ ++Q Sbjct: 393 KSFCALGDGAASPVMSSIKHFQDEYIAHVEQ 423 >gi|332528756|ref|ZP_08404733.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC 19624] gi|332041822|gb|EGI78171.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC 19624] Length = 447 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 216/410 (52%), Positives = 276/410 (67%), Gaps = 8/410 (1%) Query: 14 GLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 GL G + L D SRG ++ + KIL++G +D +I VK SGLRGRGGAGF TG+KWSFM Sbjct: 31 GLNGANWRLKDYESRGGYEALKKILKEGLTQDQVIATVKESGLRGRGGAGFPTGLKWSFM 90 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 P+ + YLV N+DE EPGTCKDRDI+ + PH +IEG IA++A+G + Y+ GE Sbjct: 91 PRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMAIAAYAMGITVGYNYIHGEI 149 Query: 130 IRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 E +AA++E A+G LG G+ + HHG GAYICGEETALLESLEGKKGQ Sbjct: 150 FEVYERFEAALEEARAAGYLGDKILGSGFSFQLHAHHGFGAYICGEETALLESLEGKKGQ 209 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+SG V Sbjct: 210 PRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEIGKPNNGGTKIFSVSGDV 269 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + F +L+E G G L AVIPGGSS P LPA M MDYD + Sbjct: 270 ERPGNYEIPLGTPFSKLLELAGGVKGG--KKLKAVIPGGSSAPVLPAHIMMECTMDYDSI 327 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + GS LG+ AVIVMD + D+++++ RLS FY HESCGQCTPCREGTGW+ R+++R+ +G Sbjct: 328 SKAGSMLGSGAVIVMDETRDMVESLKRLSYFYMHESCGQCTPCREGTGWLWRLVDRIERG 387 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ L V+ NI GRTICALGDAAA P++ +IK+FRP E I + Sbjct: 388 EGRPEDMATLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALIPK 437 >gi|254674109|emb|CBA09893.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria meningitidis alpha275] Length = 433 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA + MDYD + + GS Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIIMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL + + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|118617951|ref|YP_906283.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium ulcerans Agy99] gi|118570061|gb|ABL04812.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium ulcerans Agy99] Length = 448 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/382 (53%), Positives = 266/382 (69%), Gaps = 7/382 (1%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESE 88 ++K L G D +I VK SGLRGRGGAGFSTG KWSF+P+ + +PHYLVVNADESE Sbjct: 36 LEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFIPQGDAGPAAKPHYLVVNADESE 95 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M PH L+EG +IA++AI A AFIYVRGE + LQ AV E YA+GL Sbjct: 96 PGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGL 155 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGCPT Sbjct: 156 LGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTV 215 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT EL++ Sbjct: 216 INNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD 275 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + GGIR G L PGGSS P L + +DY+G+ +GS LGT A+ + D +T Sbjct: 276 -YAGGIRAG-HQLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGGVGSMLGTKALEIFDETT 332 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FYKHESCG+CTPCREGT W+ ++ RL G + +ID L ++S +I G Sbjct: 333 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARLETGKGTREDIDKLLDISDSILG 392 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 ++ CALGD AA P+ IK+F+ Sbjct: 393 KSFCALGDGAASPVMSSIKHFQ 414 >gi|53718852|ref|YP_107838.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243] gi|76811124|ref|YP_332849.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710b] gi|126454273|ref|YP_001065582.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106a] gi|167737857|ref|ZP_02410631.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 14] gi|167815041|ref|ZP_02446721.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 91] gi|167823457|ref|ZP_02454928.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 9] gi|167845009|ref|ZP_02470517.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei B7210] gi|167893550|ref|ZP_02480952.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 7894] gi|167901996|ref|ZP_02489201.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei NCTC 13177] gi|167910232|ref|ZP_02497323.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 112] gi|217419390|ref|ZP_03450896.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 576] gi|226195331|ref|ZP_03790920.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pakistan 9] gi|242317334|ref|ZP_04816350.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106b] gi|254181182|ref|ZP_04887779.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1655] gi|254190545|ref|ZP_04897052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195194|ref|ZP_04901623.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei S13] gi|254260557|ref|ZP_04951611.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710a] gi|52209266|emb|CAH35211.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243] gi|76580577|gb|ABA50052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710b] gi|126227915|gb|ABN91455.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106a] gi|157938220|gb|EDO93890.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pasteur 52237] gi|169651942|gb|EDS84635.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei S13] gi|184211720|gb|EDU08763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1655] gi|217396694|gb|EEC36710.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 576] gi|225932533|gb|EEH28531.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pakistan 9] gi|242140573|gb|EES26975.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106b] gi|254219246|gb|EET08630.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710a] Length = 436 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 275/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE +G LG +G D + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|121634118|ref|YP_974363.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18] gi|120865824|emb|CAM09556.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18] gi|325137073|gb|EGC59669.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M0579] gi|325139137|gb|EGC61683.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis ES14902] gi|325143087|gb|EGC65434.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis 961-5945] gi|325143157|gb|EGC65503.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis 961-5945] gi|325197532|gb|ADY92988.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis G2136] gi|325202925|gb|ADY98379.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240149] gi|325207277|gb|ADZ02729.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis NZ-05/33] Length = 433 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|304389071|ref|ZP_07371115.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC 13091] gi|304336944|gb|EFM03134.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC 13091] Length = 433 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/395 (52%), Positives = 263/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG D + + HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|30249732|ref|NP_841802.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas europaea ATCC 19718] gi|30180769|emb|CAD85683.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas europaea ATCC 19718] Length = 425 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 210/393 (53%), Positives = 269/393 (68%), Gaps = 6/393 (1%) Query: 20 LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + + R + + KIL + + +I+EVK S LRGRGGAGF TG+KWSFMPK + Sbjct: 22 LKNYLKRDGYAALKKILSQKISPEAVIDEVKKSALRGRGGAGFPTGLKWSFMPKQYTGE- 80 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G + YV GE E ++ Sbjct: 81 KYLVCNSDEGEPGTFKDRDIMRYNPHILIEGMLIAAYAMGIRTGYNYVHGEIWDVYERME 140 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AV+E +G LG N G+ + HHG GAYICGEETALLES+EGKKGQPR KPPFP Sbjct: 141 EAVEEANVAGFLGDNILGSGFSFRLYNHHGYGAYICGEETALLESIEGKKGQPRFKPPFP 200 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 AN GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+SGHVN P E Sbjct: 201 ANFGLYGKPTTINNTETFASVPWIIRNGGERYLQLGKPNNGGTKIFSVSGHVNKPGNYEV 260 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M F +L+E GG+RGG L IPGGSS+P LP M MDYD + + GS LG Sbjct: 261 PMGTPFAKLLEL-AGGMRGG-RKLKGCIPGGSSMPVLPGDIMMETDMDYDSIAKAGSMLG 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + AVI+MD +T +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + ++D Sbjct: 319 SGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRVEDLD 378 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 LL ++ NI+GRTICALGDAAA P++ ++++FR Sbjct: 379 LLDNLADNIQGRTICALGDAAAMPVRAMLQHFR 411 >gi|319943353|ref|ZP_08017635.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC 51599] gi|319743168|gb|EFV95573.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC 51599] Length = 449 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/412 (50%), Positives = 272/412 (66%), Gaps = 13/412 (3%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGR-----DWIINEVKASGLRGRGGAG 59 +IF L G +L +RG + + ++L G+ + +I EVKASGLRGRGGAG Sbjct: 24 QIFAGLTSADGWTLEQYEARGGYQALKRVLLGADGKQPMTPEEVIAEVKASGLRGRGGAG 83 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSFMP+ + YLV N+DE EPGT KDRDI+R+ PH +IEG IA++A+G Sbjct: 84 FPTGLKWSFMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRYNPHIVIEGMTIAAYAMGIS 142 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177 + Y+ GE R E + A+ + A+G LG + LG D ++ HHG GAYICGEETA Sbjct: 143 AGYNYIHGEIFRIYERFEEALAQARAAGYLG-DRILGTDFSFNLNAHHGFGAYICGEETA 201 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP I+R G + G+ NN Sbjct: 202 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSAVPWIIRNGGQAFLEAGKPNNG 261 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V P E + F +L+E GG+R G L VIPGGSS P +P Sbjct: 262 GTKIFSVGGDVERPGNYEVPLGTPFAKLLEL-AGGVRYG-RKLKMVIPGGSSAPVIPGHM 319 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M MDYD + + GS LG+ AVIVMD + ++++ RLS FY HESCGQCTPCREGTGW Sbjct: 320 MMDLTMDYDAIAKAGSMLGSGAVIVMDETRCPVRSLERLSYFYSHESCGQCTPCREGTGW 379 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + R++ R+ G + +ID L V+ NI+GRTICALGDAAA P++G IK++R Sbjct: 380 LYRLVHRIEHGQGRPEDIDELDRVAGNIQGRTICALGDAAAMPVRGFIKHYR 431 >gi|300691030|ref|YP_003752025.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] gi|299078090|emb|CBJ50733.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] Length = 431 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + II +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R+ PH LIEG I +A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRYNPHALIEGMAIGGYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + A++E A+GLLG N G++ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWDVYKRFEEALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+SG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKIFSVSG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG + AVIPGGSS P +P M MDYD Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDVMMQTDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G+ + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 311 GIAKTGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|53725814|ref|YP_103429.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344] gi|67642187|ref|ZP_00440947.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8 horse 4] gi|121600821|ref|YP_992474.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1] gi|124384341|ref|YP_001026723.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229] gi|126448595|ref|YP_001079992.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247] gi|167000363|ref|ZP_02266181.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20] gi|254175777|ref|ZP_04882437.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399] gi|254202105|ref|ZP_04908468.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH] gi|254207435|ref|ZP_04913785.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU] gi|254359857|ref|ZP_04976127.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei 2002721280] gi|52429237|gb|AAU49830.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344] gi|121229631|gb|ABM52149.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1] gi|124292361|gb|ABN01630.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229] gi|126241465|gb|ABO04558.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247] gi|147746352|gb|EDK53429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH] gi|147751329|gb|EDK58396.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU] gi|148029097|gb|EDK87002.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei 2002721280] gi|160696821|gb|EDP86791.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399] gi|238523283|gb|EEP86722.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8 horse 4] gi|243063697|gb|EES45883.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20] Length = 436 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/415 (50%), Positives = 274/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185 E +AA+DE +G LG +G D + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAVMPVRGMLKHYWDEFAYHVEHKH 424 >gi|194324420|ref|ZP_03058193.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis subsp. novicida FTE] gi|194321485|gb|EDX18970.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis subsp. novicida FTE] Length = 391 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/370 (53%), Positives = 249/370 (67%), Gaps = 4/370 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + II E+K SGLRGRGGAGF TG+KWSFMP+ + Y+V N+DE EPGTCKDR+I+R+ Sbjct: 8 EQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRN 66 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDV 159 PH LIEG IA + +GA + Y RGEF + A+ E Y +GLLG+N K G Sbjct: 67 NPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGISF 126 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ GAGAYICGEETALL SLEGKKG+PR KPPFPA GLY PT +NN E+ A VP Sbjct: 127 DLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVPA 186 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL+ G W+ G E + GTKLF +SGHV VE + + F EL++ CGG+R G + Sbjct: 187 ILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQKVVEIGLGMPFKELLD-MCGGVRNG-NK 244 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L AVIPGGSS L A +M MDY+ + GS LG+ AV+V+D +T +++ + RL+ F Sbjct: 245 LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLADF 304 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y ESCGQCTPCREGTGW+ R + R+V G + +ID L V+ NIEG TIC LGDAAAW Sbjct: 305 YYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAW 364 Query: 400 PIQGLIKNFR 409 P+Q I FR Sbjct: 365 PVQSYIDKFR 374 >gi|208780263|ref|ZP_03247605.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG] gi|208743912|gb|EDZ90214.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG] gi|332678972|gb|AEE88101.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida Fx1] Length = 391 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/370 (53%), Positives = 249/370 (67%), Gaps = 4/370 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + II E+K SGLRGRGGAGF TG+KWSFMP+ + Y+V N+DE EPGTCKDR+I+R+ Sbjct: 8 EQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRN 66 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDV 159 PH LIEG IA + +GA + Y RGEF + A+ E Y +GLLG+N K G Sbjct: 67 NPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGISF 126 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ GAGAYICGEETALL SLEGKKG+PR KPPFPA GLY PT +NN E+ A VP Sbjct: 127 DLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVPA 186 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL+ G W+ G E + GTKLF +SGHV VE + + F EL++ CGG+R G + Sbjct: 187 ILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NK 244 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L AVIPGGSS L A +M MDY+ + GS LG+ AV+V+D +T +++ + RL+ F Sbjct: 245 LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLADF 304 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y ESCGQCTPCREGTGW+ R + R+V G + +ID L V+ NIEG TIC LGDAAAW Sbjct: 305 YYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAW 364 Query: 400 PIQGLIKNFR 409 P+Q I FR Sbjct: 365 PVQSYIDKFR 374 >gi|73540669|ref|YP_295189.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134] gi|72118082|gb|AAZ60345.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134] Length = 431 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 211/412 (51%), Positives = 277/412 (67%), Gaps = 8/412 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL GK+ L D + RG + + +IL + + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLDGKNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ G Sbjct: 74 FMPRTFPGQ-KYLVCNTDEGEPGTFKDRDIIRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+G LG N G+ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN GTK+FSISG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPENYLKMGKPNNGGTKIFSISG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG + AVIPGGSS P +P M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFAKLLEL-AGGMRGG-KRIKAVIPGGSSAPVVPGEMMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E ++ Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422 >gi|308388466|gb|ADO30786.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha710] Length = 433 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 263/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|255019912|ref|ZP_05291987.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] gi|254970692|gb|EET28179.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] Length = 428 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 215/419 (51%), Positives = 274/419 (65%), Gaps = 14/419 (3%) Query: 8 IFTNLYGLQGKSLSDSM------SRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59 ++ N L+ + + DS S G + + KI +G + +I E+K S LRGRGGAG Sbjct: 1 MYVNGVTLKNRGIPDSHRLSVYESTGGYQALRKIFAEGITPEQVIAEMKTSALRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSFMPK S YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA Sbjct: 61 FPTGLKWSFMPKGVSGT-KYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGAR 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177 +I++RGEFI ++AA++E YA+G LG LG + D+ VH GAGAYICGEETA Sbjct: 120 AGYIFIRGEFIEPIRRVEAALEEAYAAGFLGERI-LGQEFSFDLYVHRGAGAYICGEETA 178 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+E+LEGKKGQPR KPPFPA+ GLYG PTT+NNVE+ A VP I+ RG W+ G+ NN Sbjct: 179 LMEALEGKKGQPRFKPPFPASYGLYGRPTTINNVETFASVPDIIVRGGQWFLDLGKANNG 238 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G V P E M F EL++ GG+ G +L AVIPGG+S L Sbjct: 239 GTKIFSVTGQVQRPGNYEVPMGTPFPELLDM-AGGLHPG-RSLKAVIPGGTSTAMLAGAT 296 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M MDYD + + GS LG +VIV+D S I++ + R++ FY HESCGQCTPCREG GW Sbjct: 297 MMECTMDYDSIAKAGSALGAGSVIVIDDSVCIVRVVERIARFYMHESCGQCTPCREGMGW 356 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + RVM R+ G + ++IDLL V IEGRTICAL D P+ IK FR E I Sbjct: 357 LWRVMHRIENGQGRAQDIDLLLNVGARIEGRTICALADGGVAPVVSSIKLFRDEYEHHI 415 >gi|114330930|ref|YP_747152.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas eutropha C91] gi|114307944|gb|ABI59187.1| NADH dehydrogenase subunit F [Nitrosomonas eutropha C91] Length = 425 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/392 (53%), Positives = 266/392 (67%), Gaps = 6/392 (1%) Query: 20 LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + R + + KIL + + +I EVK S LRGRGGAGF TG+KWSFMPK + Sbjct: 22 LKSYLKRDGYVALKKILSQKIPPEVVIEEVKKSALRGRGGAGFPTGLKWSFMPKQYTGE- 80 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G + YV GE E ++ Sbjct: 81 KYLVCNSDEGEPGTFKDRDIMRYNPHVLIEGMLIAAYAMGIRTGYNYVHGEIWDVYERME 140 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AV+E A+G LG N G+ + HHG GAYICGEETALLES+EGKKGQPR KPPFP Sbjct: 141 EAVEEANAAGFLGENILDSGFVFQLYNHHGYGAYICGEETALLESIEGKKGQPRFKPPFP 200 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 AN GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+SGHVN P E Sbjct: 201 ANFGLYGKPTTINNTETFASVPWIMRNGGESYLQLGKPNNGGTKIFSVSGHVNKPGNYEV 260 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M F +L+E GG+RGG L IPGGSS+P LP M MDYD + + GS LG Sbjct: 261 PMGTPFSKLLEL-AGGMRGG-RKLKGCIPGGSSMPVLPGSIMMETDMDYDSIAKAGSMLG 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + AVI+MD +T +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + ++D Sbjct: 319 SGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRIEDLD 378 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++ NI+GRTICALGDAAA P++ ++ +F Sbjct: 379 VLNNLADNIQGRTICALGDAAAMPVRAMLHHF 410 >gi|134283882|ref|ZP_01770578.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 305] gi|167718848|ref|ZP_02402084.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei DM98] gi|254298538|ref|ZP_04965990.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 406e] gi|134244671|gb|EBA44769.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 305] gi|157808144|gb|EDO85314.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 406e] Length = 436 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/415 (50%), Positives = 274/415 (66%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185 E +AA+ E +G LG +G D +H HG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALGEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|42524473|ref|NP_969853.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100] gi|39576682|emb|CAE80846.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100] Length = 430 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/409 (49%), Positives = 275/409 (67%), Gaps = 5/409 (1%) Query: 7 RIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 ++ T Y L + ++L+ ++G ++ + K + II+EVKASGLRGRGGAGF TGMK Sbjct: 5 KMLTEFYHLPEYQTLAGYKAKGGYETLHKAFKMQPQAIIDEVKASGLRGRGGAGFPTGMK 64 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W F+PK + P YL+ NADE EPGT KDR +M PH LIEG +I++FAIG+H +IYV Sbjct: 65 WGFLPK--NGEPRYLLCNADEGEPGTFKDRMMMERAPHQLIEGMIISAFAIGSHKGYIYV 122 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE++ E L A+ E YA+GLLG N G+D D+ V+ GAGAYICGEET ++ SLEG Sbjct: 123 RGEYVFPIECLNKAIKEAYAAGLLGKNILGSGFDFDLDVYRGAGAYICGEETGMISSLEG 182 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KGQP+LKPPFPA G PT VNNVE++A V I++ GA Y G E + GTKLFS+ Sbjct: 183 LKGQPKLKPPFPAVQGYLRKPTIVNNVETLAAVTYIIKDGAQAYRKHGTEKSAGTKLFSL 242 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG+V P E + +LI K GG++ G L AVIPGGSS P L A ++ A +D Sbjct: 243 SGNVMTPGNFEVPLGYPLMDLIMKEGGGMKPG-RKLKAVIPGGSSAPVLTAEEVAKANLD 301 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 Y+ L +G+ LG+ AVIV+D S ++ + L+ FY HESCGQCTPCREGTGW+ +V+ Sbjct: 302 YESLAGLGTMLGSGAVIVIDDSQCMVDMLGVLTHFYAHESCGQCTPCREGTGWLNKVLHS 361 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 +++G + ++IDLL +V+ N++G+TICAL DAAA P+ + FR E Sbjct: 362 ILEGRGRLQDIDLLIKVADNMKGKTICALSDAAALPVLSFVTKFRDEFE 410 >gi|161870818|ref|YP_001599991.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442] gi|161596371|gb|ABX74031.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442] Length = 433 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/395 (51%), Positives = 262/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ + A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 ETALAQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGCMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL + + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|325131608|gb|EGC54315.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M6190] Length = 433 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 204/395 (51%), Positives = 263/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+++ A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCRE TGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCRESTGWLYRIVHRIVEGKGKMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|194366599|ref|YP_002029209.1| NADH-quinone oxidoreductase subunit F [Stenotrophomonas maltophilia R551-3] gi|194349403|gb|ACF52526.1| NADH-quinone oxidoreductase, F subunit [Stenotrophomonas maltophilia R551-3] Length = 446 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/417 (49%), Positives = 270/417 (64%), Gaps = 8/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ + +I VKASGLRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ VP I+R G W+ G N G K FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPKCFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TF +L++ GG+R G L IPGG S+P L A +++ M Sbjct: 259 VSGCVQNGGNFEVPLGTTFHDLLQM-AGGLRPG-RTLKGAIPGGVSMPVLTAAELKDLPM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD ++ +GSGLG+ A++V+D S +K R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 377 RIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433 >gi|197124712|ref|YP_002136663.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K] gi|220919433|ref|YP_002494737.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|196174561|gb|ACG75534.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K] gi|219957287|gb|ACL67671.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 441 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/406 (49%), Positives = 272/406 (66%), Gaps = 7/406 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL+ + G + +DK + I++EVK S LRGRGGAGF+TG+KW+F+PK RP Sbjct: 18 SLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATGLKWTFLPKDV--RPR 75 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL VNADESEPGT KDR I+ H+PH LIEG + +A+ H A++Y+RGEF ++ L+ Sbjct: 76 YLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYVYIRGEFAKQARILEQ 135 Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E +G+LG K + +DI VH GAGAYICGEE+ALLESLEGKKG PRLKPPFP Sbjct: 136 AIQEARDAGILGPRLLGKQDFPLDIHVHRGAGAYICGEESALLESLEGKKGYPRLKPPFP 195 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NNVE+IA VP I+ G + ++ G + GT+LF +SGHVN P E+ Sbjct: 196 AVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRLFGVSGHVNRPGVYEK 255 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +LI + GGI GG L AVIPGGSS P L A ++ + +++D +K GS G Sbjct: 256 PVHYNLKKLIMEDAGGIVGG-RKLKAVIPGGSSAPVLAAHEIDIS-LEFDAVKAAGSMSG 313 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + VIV D S +++A+ R++ FY ESCGQCTPCREGT WM ++E++ G A +++ Sbjct: 314 SGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGILEKIEHGHATAADVE 373 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 L +V+ NI G TICALGDAAA P+Q +K F+P ++ HRC Sbjct: 374 KLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHVEA-HRC 418 >gi|260223138|emb|CBA33401.1| NADH-quinone oxidoreductase subunit F [Curvibacter putative symbiont of Hydra magnipapillata] Length = 619 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 215/395 (54%), Positives = 270/395 (68%), Gaps = 14/395 (3%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65 GL G SL D ++RG + + KIL K +D +I VK SGLRGRGGAGF TG+K Sbjct: 125 GLNGSNWSLQDYVARGGYQALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFPTGLK 184 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGTCKDRDI++ PH +IEG IA++A+G + Y+ Sbjct: 185 WSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGITVGYNYI 243 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLE 183 GE + +AA++E A+G LG N LG + +H HG GAYICGEETALLESLE Sbjct: 244 HGEIFASYDRFEAALEEARAAGFLGDNI-LGSNFSFQLHAAHGFGAYICGEETALLESLE 302 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK++S Sbjct: 303 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIYS 362 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E M F +L+E GG+RGG NL AVIPGGSS P LPA + M Sbjct: 363 VSGDVERPGNYEIPMGTPFSKLLEL-AGGVRGG-RNLKAVIPGGSSSPVLPASIIMECTM 420 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD + + GS LG+ AVIVMD + ++KA+ RLS FY HESCGQCTPCREGTGW+ R+++ Sbjct: 421 DYDSIAKAGSMLGSGAVIVMDETRCMVKALQRLSYFYMHESCGQCTPCREGTGWLSRMVD 480 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 R+ G + ++DLL V++NI+GRTICALGDAAA Sbjct: 481 RIEGGQGRPSDMDLLDNVAENIQGRTICALGDAAA 515 >gi|215413017|ref|ZP_03421718.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis 94_M4241A] gi|298526624|ref|ZP_07014033.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis 94_M4241A] gi|298496418|gb|EFI31712.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis 94_M4241A] Length = 445 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/418 (49%), Positives = 272/418 (65%), Gaps = 28/418 (6%) Query: 16 QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55 Q L+ +SR HWD+ + K L D +I+ VK SGLRGR Sbjct: 4 QATPLTPVISR-HWDDPKSWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62 Query: 56 GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 GGAGF+TG KWSF+P+ + +PHYLVVNADESEPGTCKD +M PH LIEG +IA Sbjct: 63 GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171 ++AI AH AF+YVRGE + L AV E YA+G LG N G+D++++VH GAGAYI Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182 Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 CGEETALL+SLEG++GQPRL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242 Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 G E + G L+S+SGHV P E + IT EL++ + GG+R G L PGGSS P Sbjct: 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTP 300 Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 L + +DY+G+ GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPC Sbjct: 301 LLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359 Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 REGT W+ ++ ERL G +ID L ++S +I G++ CALGD AA P+ IK+FR Sbjct: 360 REGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFR 417 >gi|194289164|ref|YP_002005071.1| NADH:ubiquinone oxidoreductase complex i, chain f [Cupriavidus taiwanensis LMG 19424] gi|193222999|emb|CAQ69004.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus taiwanensis LMG 19424] Length = 431 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/412 (50%), Positives = 276/412 (66%), Gaps = 8/412 (1%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D + RG + + +IL + + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLDGNNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N DE EPGT KDRDI+R+ PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRTFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + + A++E A+G LG N G+ + HHG GAYICGEETALLESLEGKK Sbjct: 133 EIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN GTK+FSISG Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKMGKPNNGGTKIFSISG 252 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F +L+E GG+RGG + AVIPGGSS P +P M + MDYD Sbjct: 253 DVERPGNYEIPLGTPFAKLLEL-AGGMRGG-KRIKAVIPGGSSAPVVPGDLMMASDMDYD 310 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E ++ Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422 >gi|41409304|ref|NP_962140.1| hypothetical protein MAP3206 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398124|gb|AAS05754.1| NuoF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 453 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/411 (50%), Positives = 270/411 (65%), Gaps = 8/411 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75 +L G + + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + Sbjct: 34 TLQTYHRHGGYTAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAA 93 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI A+ AFIYVRGE + Sbjct: 94 KPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPVLRR 153 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQ AV E YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 154 LQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 213 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 214 FPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 273 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL++ + GG+R G L PGGSS P L + +DY+G+ +GS Sbjct: 274 EAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVGGVGSM 330 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G + Sbjct: 331 LGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGTAED 390 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ID L ++S I G++ CALGD AA P+ IK FR ++ RC F Sbjct: 391 IDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440 >gi|86160615|ref|YP_467400.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter dehalogenans 2CP-C] gi|85777126|gb|ABC83963.1| NADH dehydrogenase subunit F [Anaeromyxobacter dehalogenans 2CP-C] Length = 441 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/406 (49%), Positives = 272/406 (66%), Gaps = 7/406 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL+ + G + +DK + I++EVK S LRGRGGAGF+TG+KW+F+PK RP Sbjct: 18 SLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATGLKWTFLPKDV--RPR 75 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL VNADESEPGT KDR I+ H+PH LIEG + +A+ H A++Y+RGEF ++ L+ Sbjct: 76 YLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYVYIRGEFAKQARILEQ 135 Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E +G+LG K + +DI VH GAGAYICGEE+ALLESLEGKKG PRLKPPFP Sbjct: 136 AIQEARDAGILGPRLLGKKDFPLDIHVHRGAGAYICGEESALLESLEGKKGYPRLKPPFP 195 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NNVE+IA VP I+ G + ++ G + GT+LF +SGHVN P E+ Sbjct: 196 AVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRLFGVSGHVNRPGVYEK 255 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +LI + GGI GG L AVIPGGSS P L A ++ + +++D +K GS G Sbjct: 256 PVHYNLKKLIMEDAGGIVGG-RKLKAVIPGGSSAPVLAAHEIDIS-LEFDAVKAAGSMSG 313 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + VIV D S +++A+ R++ FY ESCGQCTPCREGT WM ++E++ G A +++ Sbjct: 314 SGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGILEKIEHGHATAADVE 373 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 L +V+ NI G TICALGDAAA P+Q +K F+P ++ HRC Sbjct: 374 KLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHVEA-HRC 418 >gi|121998539|ref|YP_001003326.1| NADH-quinone oxidoreductase subunit F [Halorhodospira halophila SL1] gi|121589944|gb|ABM62524.1| NADH dehydrogenase subunit F [Halorhodospira halophila SL1] Length = 426 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/380 (51%), Positives = 259/380 (68%), Gaps = 9/380 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRH 100 +++EVK S LRGRGGAGF G+KW FMP+ DR YL+ N+DESEPGTCKD DI+R Sbjct: 43 VVDEVKQSALRGRGGAGFPPGIKWGFMPR---DRAGQKYLICNSDESEPGTCKDHDILRF 99 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYD 158 PH ++EG +IA +A+GA + Y+RGEF E E ++ AV E +G LG + G+D Sbjct: 100 NPHAVVEGMIIAGYAMGATVGYNYLRGEFHHEPFERMEQAVAEARKAGYLGRDILGSGFD 159 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ H+GAGAYICGEE+AL+ESLEGKKGQPR KPPFPA VG+YG PTT+NN E++A VP Sbjct: 160 FELHNHYGAGAYICGEESALMESLEGKKGQPRYKPPFPAQVGIYGKPTTINNTETLASVP 219 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 ++R GA W+ G+ NN G K+FS+SGHV P E M F EL+E GG+R G Sbjct: 220 AVIRNGAEWFLNLGKPNNGGEKIFSVSGHVACPGNYEIPMGTPFRELLEM-AGGVRAG-H 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 L AVIPGGSS P +P M MDYD + GS LG+ AV+V+D +TD+++ + R++ Sbjct: 278 RLKAVIPGGSSTPVVPGETMLETDMDYDSIAAAGSMLGSGAVVVIDETTDMVRILARITR 337 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 FY ESCGQCTPCREGTGW+ R ++R+ +G ++ +L EV I G TICA G+AAA Sbjct: 338 FYYAESCGQCTPCREGTGWLYRAVQRIYEGRGTYDDLRMLEEVPGQIAGHTICAFGEAAA 397 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q I++FR E I+ Sbjct: 398 TPVQSFIQHFRHEFEHYIEH 417 >gi|118462706|ref|YP_883190.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104] gi|254776460|ref|ZP_05217976.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium subsp. avium ATCC 25291] gi|118163993|gb|ABK64890.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104] Length = 453 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/411 (50%), Positives = 270/411 (65%), Gaps = 8/411 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75 +L G + + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + Sbjct: 34 TLQTYHRHGGYAAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAA 93 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI A+ AFIYVRGE + Sbjct: 94 KPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPVLRR 153 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQ AV E YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 154 LQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 213 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 214 FPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 273 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL++ + GG+R G L PGGSS P L + +DY+G+ +GS Sbjct: 274 EAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVGGVGSM 330 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G + Sbjct: 331 LGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGTAED 390 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ID L ++S I G++ CALGD AA P+ IK FR ++ RC F Sbjct: 391 IDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440 >gi|15610286|ref|NP_217666.1| NADH dehydrogenase I chain F [Mycobacterium tuberculosis H37Rv] gi|15842726|ref|NP_337763.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis CDC1551] gi|31794326|ref|NP_856819.1| NADH dehydrogenase I chain F [Mycobacterium bovis AF2122/97] gi|121639033|ref|YP_979257.1| putative NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663005|ref|YP_001284528.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra] gi|148824344|ref|YP_001289098.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis F11] gi|215405148|ref|ZP_03417329.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis 02_1987] gi|215432109|ref|ZP_03430028.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis EAS054] gi|215447440|ref|ZP_03434192.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis T85] gi|218754930|ref|ZP_03533726.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis GM 1503] gi|219559196|ref|ZP_03538272.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis T17] gi|224991525|ref|YP_002646214.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str. Tokyo 172] gi|253800184|ref|YP_003033185.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 1435] gi|254233769|ref|ZP_04927094.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis C] gi|254365775|ref|ZP_04981820.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis str. Haarlem] gi|260188191|ref|ZP_05765665.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis CPHL_A] gi|260202296|ref|ZP_05769787.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T46] gi|260206489|ref|ZP_05773980.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis K85] gi|289444714|ref|ZP_06434458.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium tuberculosis T46] gi|289448830|ref|ZP_06438574.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis CPHL_A] gi|289555423|ref|ZP_06444633.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 605] gi|289571361|ref|ZP_06451588.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T17] gi|289575862|ref|ZP_06456089.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis K85] gi|289746959|ref|ZP_06506337.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis 02_1987] gi|289755269|ref|ZP_06514647.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054] gi|289759280|ref|ZP_06518658.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85] gi|289763333|ref|ZP_06522711.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis GM 1503] gi|297635793|ref|ZP_06953573.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 4207] gi|297732790|ref|ZP_06961908.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN R506] gi|306794903|ref|ZP_07433205.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu005] gi|307085896|ref|ZP_07495009.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu012] gi|313660123|ref|ZP_07817003.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN V2475] gi|54037918|sp|P65568|NUOF_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|54041669|sp|P65567|NUOF_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|1781218|emb|CAB06289.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN F) [Mycobacterium tuberculosis H37Rv] gi|13883048|gb|AAK47577.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis CDC1551] gi|31619922|emb|CAD95266.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN F) [Mycobacterium bovis AF2122/97] gi|121494681|emb|CAL73162.1| Probable NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599298|gb|EAY58402.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis C] gi|134151288|gb|EBA43333.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis str. Haarlem] gi|148507157|gb|ABQ74966.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra] gi|148722871|gb|ABR07496.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis F11] gi|224774640|dbj|BAH27446.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str. Tokyo 172] gi|253321687|gb|ACT26290.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 1435] gi|289417633|gb|EFD14873.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium tuberculosis T46] gi|289421788|gb|EFD18989.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis CPHL_A] gi|289440055|gb|EFD22548.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 605] gi|289540293|gb|EFD44871.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis K85] gi|289545115|gb|EFD48763.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T17] gi|289687487|gb|EFD54975.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis 02_1987] gi|289695856|gb|EFD63285.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054] gi|289710839|gb|EFD74855.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis GM 1503] gi|289714844|gb|EFD78856.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85] gi|308336689|gb|EFP25540.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu005] gi|308364631|gb|EFP53482.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu012] gi|326902626|gb|EGE49559.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis W-148] gi|328459921|gb|AEB05344.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 4207] Length = 445 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/418 (49%), Positives = 272/418 (65%), Gaps = 28/418 (6%) Query: 16 QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55 Q L+ +SR HWD+ + K L D +I+ VK SGLRGR Sbjct: 4 QATPLTPVISR-HWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62 Query: 56 GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 GGAGF+TG KWSF+P+ + +PHYLVVNADESEPGTCKD +M PH LIEG +IA Sbjct: 63 GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171 ++AI AH AF+YVRGE + L AV E YA+G LG N G+D++++VH GAGAYI Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182 Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 CGEETALL+SLEG++GQPRL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242 Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 G E + G L+S+SGHV P E + IT EL++ + GG+R G L PGGSS P Sbjct: 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTP 300 Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 L + +DY+G+ GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPC Sbjct: 301 LLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359 Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 REGT W+ ++ ERL G +ID L ++S +I G++ CALGD AA P+ IK+FR Sbjct: 360 REGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFR 417 >gi|308232349|ref|ZP_07664059.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu001] gi|308371245|ref|ZP_07667116.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu003] gi|308372437|ref|ZP_07667377.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu004] gi|308380584|ref|ZP_07490464.2| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu011] gi|308214179|gb|EFO73578.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu001] gi|308329370|gb|EFP18221.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu003] gi|308333199|gb|EFP22050.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu004] gi|308361023|gb|EFP49874.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu011] Length = 422 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/385 (52%), Positives = 263/385 (68%), Gaps = 7/385 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85 + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ + +PHYLVVNAD Sbjct: 13 YQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNAD 72 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE + L AV E YA Sbjct: 73 ESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYA 132 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGC Sbjct: 133 AGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 192 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT E Sbjct: 193 PTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRE 252 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ + GG+R G L PGGSS P L + +DY+G+ GS LGT A+ + D Sbjct: 253 LLD-YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFD 309 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G +ID L ++S + Sbjct: 310 ETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDS 369 Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409 I G++ CALGD AA P+ IK+FR Sbjct: 370 ILGKSFCALGDGAASPVMSSIKHFR 394 >gi|167970179|ref|ZP_02552456.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis H37Ra] Length = 424 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/385 (52%), Positives = 263/385 (68%), Gaps = 7/385 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85 + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ + +PHYLVVNAD Sbjct: 15 YQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNAD 74 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE + L AV E YA Sbjct: 75 ESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYA 134 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGC Sbjct: 135 AGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 194 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT E Sbjct: 195 PTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRE 254 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ + GG+R G L PGGSS P L + +DY+G+ GS LGT A+ + D Sbjct: 255 LLD-YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFD 311 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G +ID L ++S + Sbjct: 312 ETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDS 371 Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409 I G++ CALGD AA P+ IK+FR Sbjct: 372 ILGKSFCALGDGAASPVMSSIKHFR 396 >gi|308374786|ref|ZP_07667861.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu006] gi|308340530|gb|EFP29381.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu006] Length = 422 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/385 (52%), Positives = 263/385 (68%), Gaps = 7/385 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85 + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ + +PHYLVVNAD Sbjct: 13 YQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNAD 72 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE + L AV E YA Sbjct: 73 ESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYA 132 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGC Sbjct: 133 AGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 192 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT E Sbjct: 193 PTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRE 252 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ + GG+R G L PGGSS P L + +DY+G+ GS LGT A+ + D Sbjct: 253 LLD-YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFD 309 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G +ID L ++S + Sbjct: 310 ETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDS 369 Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409 I G++ CALGD AA P+ IK+FR Sbjct: 370 ILGKSFCALGDGAASPVMSSIKHFR 394 >gi|117927481|ref|YP_872032.1| NADH-quinone oxidoreductase, F subunit [Acidothermus cellulolyticus 11B] gi|117647944|gb|ABK52046.1| NADH dehydrogenase subunit F [Acidothermus cellulolyticus 11B] Length = 434 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/401 (51%), Positives = 263/401 (65%), Gaps = 10/401 (2%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + + K L D ++ VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADE Sbjct: 28 GGYQALRKALAMSPDAVLQLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVVNADE 86 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGTCKD ++ PHTLIEG +IAS+AI AH AFIY+RGE + L AV+E A+ Sbjct: 87 SEPGTCKDIPLLMATPHTLIEGAIIASYAIRAHQAFIYIRGEVVHVIRRLLRAVEEARAA 146 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G LG + G+D+DI VH GAGAYICGEETALLESLEG +GQPRL+PPFPA GLYGCP Sbjct: 147 GYLGRDILGSGFDLDITVHIGAGAYICGEETALLESLEGYRGQPRLRPPFPATAGLYGCP 206 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NNVE+IA VP I+R G WY G E + G K+FS+SGHV P E + IT EL Sbjct: 207 TVINNVETIASVPAIVRGGVEWYRSMGTEKSPGFKIFSLSGHVARPGQYEAPLGITLREL 266 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 ++ GG+R G L PGGSS P A + +D++G + GS LGT A+ + D Sbjct: 267 LDA-AGGMREG-HELKFWTPGGSSTPLFTAEHLD-VPLDFEGPPQHGSMLGTTALQIFDE 323 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +T +++A+ R FY HESCG+CTPCREGT W ++ +RL KG+ +I+ L ++S NI Sbjct: 324 TTCVVRAVKRWCEFYAHESCGKCTPCREGTFWYAQIFDRLEKGLGTAEDIETLLDLSDNI 383 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR--CNF 424 GR CALGD A P+ I+ FR +E I Y + C F Sbjct: 384 LGRAFCALGDGATSPVTSSIQYFR---DEYIAHYEQGGCPF 421 >gi|291296251|ref|YP_003507649.1| NADH-quinone oxidoreductase F subunit [Meiothermus ruber DSM 1279] gi|290471210|gb|ADD28629.1| NADH-quinone oxidoreductase, F subunit [Meiothermus ruber DSM 1279] Length = 438 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/403 (49%), Positives = 268/403 (66%), Gaps = 7/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +LS ++ G + + K + +G+DW+I EVK SGLRGRGGAGF TG+KWSFMP+ + + H Sbjct: 28 TLSYYLAHGGYQAIRKAIAQGQDWVIEEVKKSGLRGRGGAGFPTGLKWSFMPR-NTGKQH 86 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADESEPG+ KDR +M +PH LIEG +IA AI A +IY+RGE+ R + L A Sbjct: 87 YIVCNADESEPGSFKDRYLMEDDPHQLIEGMMIAGVAIQASKGYIYIRGEYRRAYDRLIA 146 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E YA+G LG N G+ D+ VH GAGAYICGEETAL+ SLEG + PR+KPPFPA Sbjct: 147 AIREAYAAGYLGQNVMGTGFSFDLYVHRGAGAYICGEETALMNSLEGLRANPRMKPPFPA 206 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PTT+NNVES+ V I+ RGA W++ G E ++G KLF +SG P E Sbjct: 207 QAGLWGMPTTINNVESLCSVVHIIERGADWFASMGTEKSKGHKLFQVSGPFKRPGVYELP 266 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKEMGSGLG 316 + TF EL+ GG + + A+IPGGSS P LP ++ MDY+ + GS LG Sbjct: 267 LGTTFRELLFDWAGGPT---EPIQAIIPGGSSCPPLPWNDEILDTPMDYESISAKGSLLG 323 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMMRVMERLVKGIAQKREI 375 T VI + S ++ A+W ++ FY HESCG+CTPCREG +GWM+ + E++ G QK ++ Sbjct: 324 TGGVIGIPASMSMVDAMWNITRFYGHESCGKCTPCREGVSGWMVSLFEKIGTGQGQKGDV 383 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +LL + IEGR+ CAL DAA WP++G +K+FR E ++Q Sbjct: 384 ELLESMLDQIEGRSFCALADAACWPVRGSLKHFRHQFVEAVEQ 426 >gi|294669098|ref|ZP_06734184.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309090|gb|EFE50333.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 426 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/394 (51%), Positives = 263/394 (66%), Gaps = 6/394 (1%) Query: 19 SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + +D +I EVK SGLRGRGGAGF +G+KWSFMP+ Sbjct: 15 TLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSFPGE 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+R PH LIEG +I +A+GA + Y+ GE + Sbjct: 75 -KYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGYQRF 133 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 +AA+ E +G LG N G+D ++ HHG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 134 EAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GL+G PTT+NN E+ A VP I+R G ++ G N GTKLFS+SGHV P E Sbjct: 194 PASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPGNYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F +L+ GG+RGG L AVIPGGSS P +P M MDYD + + GS L Sbjct: 254 VPLGTPFADLLSM-AGGVRGG-KKLKAVIPGGSSSPVIPGDMMMTLTMDYDAISKAGSML 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V G + ++ Sbjct: 312 GSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIVNGQGRMEDL 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +LL + N+ GRTICAL DAA +P++G +K++R Sbjct: 372 ELLESIGNNMAGRTICALADAAVFPVRGFMKHYR 405 >gi|254468829|ref|ZP_05082235.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium KB13] gi|207087639|gb|EDZ64922.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium KB13] Length = 437 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/410 (49%), Positives = 271/410 (66%), Gaps = 10/410 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 S+ S G ++ + +IL+ D +I+E+K SGLRGRGGAGF TG+KWSFMP+ D Sbjct: 33 SIKTYQSIGGYEQIKRILKNKIDPQQLIDEIKISGLRGRGGAGFPTGVKWSFMPR-DYDG 91 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N+DE EPGT KDRDI+R+ PH LIEG +I ++ + A F Y+ GE + Sbjct: 92 TKYIVCNSDEGEPGTFKDRDIIRYNPHQLIEGMIIGAYIMNAQVGFNYIHGEIWEDYVFF 151 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+++ +G LG+N G+D ++ HG GAYICGEETAL+ES+EGKKGQPR KPPF Sbjct: 152 EKAIEDARKAGFLGNNILGSGFDFELHAVHGYGAYICGEETALIESIEGKKGQPRYKPPF 211 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G+YG PT VNN E+ A +P I+ G + G N+ GTK+FS+SGHV P E Sbjct: 212 PATYGIYGKPTNVNNTETYASIPWIIEHGGQEFMSHGVPNSGGTKIFSVSGHVEKPGNYE 271 Query: 256 ESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 + + F +L+ + GG+ W N L AVIPGG S P +PA + A +DYDGL ++GS Sbjct: 272 IQLGMPFRQLLAE-AGGV---WKNRQLKAVIPGGPSTPVVPANIIIDATLDYDGLAQIGS 327 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G ++IVMD ST +++A+ RLS F+ ESCGQCTPCREGTGW+ R+++R+ KG A Sbjct: 328 SVGAGSMIVMDDSTCMVQALRRLSYFFYEESCGQCTPCREGTGWVYRIIDRIFKGQATLA 387 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 ++DLL +VSK I GRTICALGDAAA P+ IK+FR E I N Sbjct: 388 DLDLLTDVSKKISGRTICALGDAAATPVLSFIKHFRSEFENFIKHGKSVN 437 >gi|225024119|ref|ZP_03713311.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC 23834] gi|224943144|gb|EEG24353.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC 23834] Length = 431 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/394 (51%), Positives = 263/394 (66%), Gaps = 6/394 (1%) Query: 19 SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + +D +I EVK SGLRGRGGAGF +G+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+R PH LIEG +I +A+GA + Y+ GE + Sbjct: 82 -KYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 +AA+ E +G LG N G+D ++ HHG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 141 EAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GL+G PTT+NN E+ A VP I+R G ++ G N GTKLFS+SGHV P E Sbjct: 201 PASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPGNYE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F +L+ GG+RGG L AVIPGGSS P +P M MDYD + + GS L Sbjct: 261 VPLGTPFADLL-AMAGGVRGG-KKLKAVIPGGSSSPVIPGDMMMTLTMDYDAIAKAGSML 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V G + ++ Sbjct: 319 GSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIVHRIVNGQGRMEDL 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +LL + N+ GRTICAL DAA +P++G +K++R Sbjct: 379 ELLESIGNNMAGRTICALADAAVFPVRGFMKHYR 412 >gi|190575273|ref|YP_001973118.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia K279a] gi|190013195|emb|CAQ46828.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia K279a] Length = 446 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/417 (49%), Positives = 269/417 (64%), Gaps = 8/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 ++T L+ S + G + + KILE+ + +I VKASGLRGRGGAGF TG+K Sbjct: 21 VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Y+ Sbjct: 81 WSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ VP I+R G W+ G N G K FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPKCFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + F +L+E GG+R G L IPGG S+P L A +++ M Sbjct: 259 VSGCVQNGGNFEVPLGTKFHDLLEM-AGGLRPG-RTLKGAIPGGVSMPVLTAAELKDLPM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD ++ +GSGLG+ A++V+D S +K R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 377 RIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433 >gi|319638821|ref|ZP_07993579.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102] gi|317399725|gb|EFV80388.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102] Length = 431 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYTALRKILSENISQSDVIDEVKASGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+ + A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALAQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|226227063|ref|YP_002761169.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] gi|226090254|dbj|BAH38699.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] Length = 442 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/405 (49%), Positives = 267/405 (65%), Gaps = 7/405 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + ++L+ +RG ++ ++K L I N VK SGLRGRGGAGF TGMKWSFM Sbjct: 23 EARTLAGWRARGGYEALEKALATDPVEIQNIVKESGLRGRGGAGFPTGMKWSFMKP--DG 80 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + HYL NADESEPGT KDR+IMR PH L+EG + + AI A A+IY+RGEF Sbjct: 81 KTHYLCCNADESEPGTFKDREIMRWTPHGLVEGVALGAHAIYAETAYIYIRGEFTEPYAR 140 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + AAV+E YA+G+LG+N+ G VD+ VH GAGAYICGEETAL+ SLEG++G PR+KPP Sbjct: 141 VCAAVEEAYAAGILGANAMGSGKRVDVHVHRGAGAYICGEETALMNSLEGRRGNPRIKPP 200 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR---GTKLFSISGHVNYP 251 FPA GL+G PTT+NNVE++ VP I++ GA WY FGR +N GTKLFS+ G+++ P Sbjct: 201 FPAVAGLFGKPTTINNVETLTAVPYIVKNGAEWYKQFGRADNPKSIGTKLFSVCGNISRP 260 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E ++ F E + CGG G + + AVIPGGSSVP L + A+MDY+G+ + Sbjct: 261 GNYEVALGFPFKEFLYDLCGGPLPGRE-IKAVIPGGSSVPILTREEAESALMDYEGMVAV 319 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ VIV D D+++ I RL+ FY HESC QC+ CREGT W R+MER+ G Sbjct: 320 GTMMGSGGVIVFDDRQDMVRQIARLTRFYAHESCAQCSQCREGTAWTTRIMERIRDGQGT 379 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++D L ++ N+ G+TIC L D+ A P+ +K FR E +I Sbjct: 380 AEDLDTLLSIADNMSGKTICVLSDSCATPVVSGLKKFRHEFEAKI 424 >gi|296169187|ref|ZP_06850840.1| NADH-quinone oxidoreductase subunit F [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896085|gb|EFG75752.1| NADH-quinone oxidoreductase subunit F [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 440 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/385 (52%), Positives = 260/385 (67%), Gaps = 7/385 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85 + + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + +PHYLVVNAD Sbjct: 34 YQALKKALAMAPDDVIATVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAAKPHYLVVNAD 93 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PH L+EG +IA++AI A AFIYVRGE + LQ AV E YA Sbjct: 94 ESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYA 153 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG + + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGC Sbjct: 154 AGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 213 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT E Sbjct: 214 PTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVARPGQYEAPLGITLRE 273 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L+ + GG+R G L PGGSS P L + +DY+G+ GS LGT A+ + D Sbjct: 274 LL-AYAGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVGAAGSMLGTKALEIFD 330 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G +ID L ++S Sbjct: 331 ETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGTNEDIDKLLDISDT 390 Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409 I G++ CALGD AA P+ IK FR Sbjct: 391 ILGKSFCALGDGAASPVMSSIKYFR 415 >gi|167585976|ref|ZP_02378364.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ubonensis Bu] Length = 440 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/415 (50%), Positives = 279/415 (67%), Gaps = 10/415 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA++E A+G LG+N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALEEARAAGFLGNNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y+ G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLTVGPQAYAELGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|111220504|ref|YP_711298.1| NADH dehydrogenase I chain F [Frankia alni ACN14a] gi|111148036|emb|CAJ59702.1| NADH dehydrogenase I chain F [Frankia alni ACN14a] Length = 443 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/370 (54%), Positives = 261/370 (70%), Gaps = 5/370 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I +K SGLRGRGGAGF TGMKW F+P+ +PHYLV+NADE EPGTCKD +M+ Sbjct: 40 DDLIKLIKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKA 98 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH+L+EG +IA++A+ A+ AFIY+RGE I L+AAV E YA+G LG + G+D+ Sbjct: 99 DPHSLVEGIIIAAYAVRANRAFIYLRGELIHAGRRLRAAVAEAYAAGYLGRDILGSGFDL 158 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY PT VNNVE+IA VP Sbjct: 159 DLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTVVNNVETIATVPY 218 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ G W+ GRE G K+FS+SGHV P E M T EL+E GG+RGG Sbjct: 219 IVNYGVDWFRTMGRERAPGPKIFSLSGHVTRPGQYEVPMGTTLRELLEL-AGGVRGG-RA 276 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A PGGSS P L A + A +D++G++E GS LGTAA+++MD +TD+++ + RL+ F Sbjct: 277 LKAWTPGGSSTPMLTAEHLD-APLDFEGMQEAGSLLGTAALMIMDETTDMLRVVRRLTQF 335 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y HESCG+CTPCREGT WM++++ RL +G ++D L + NI GR CAL D A Sbjct: 336 YAHESCGKCTPCREGTSWMVKILSRLERGQGDASDVDTLVDACDNIFGRAFCALADGATS 395 Query: 400 PIQGLIKNFR 409 PI IK FR Sbjct: 396 PIVSGIKYFR 405 >gi|311744397|ref|ZP_07718199.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM 15272] gi|311312363|gb|EFQ82278.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM 15272] Length = 436 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/392 (52%), Positives = 263/392 (67%), Gaps = 5/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L+ ++G +D + + + II VK SGLRGRGGAGF TGMKWSF+P + P Sbjct: 20 TLAAYEAQGGYDGLRRAVTMEPGEIIELVKDSGLRGRGGAGFPTGMKWSFIP-ADNPNPR 78 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD +M PHTL+EG +IAS AIGA AFIYVRGE + LQA Sbjct: 79 YLVVNADESEPGTCKDIPLMMASPHTLVEGVIIASRAIGAETAFIYVRGEVLHVVRRLQA 138 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E Y +G LG++ + G +D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA Sbjct: 139 AVREAYEAGYLGADVAGSGTRLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 198 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT +NNVESIA VP IL G W+ G E ++G L+S+SGHV P E Sbjct: 199 VAGLYASPTVINNVESIASVPAILAHGVDWFGSMGTEKSKGFTLYSLSGHVKRPGQYEAP 258 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + IT E++E GG+R G L PGGSS P L A + +DY+G+ GS LGT Sbjct: 259 LGITLREILELG-GGMRDG-SELKFWTPGGSSTPILTAEHLD-VPLDYEGVGAAGSMLGT 315 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ V D++T +++ + R + FYKHESCG+CTPCREGT W+++ + RL G Q +I+L Sbjct: 316 KALQVFDQTTSVVRCVLRWTEFYKHESCGKCTPCREGTWWLVQTLRRLDSGQGQAGDIEL 375 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++ NI GR+ CALGD A PI I+ FR Sbjct: 376 LLDLCDNILGRSFCALGDGATSPITSAIQYFR 407 >gi|254821139|ref|ZP_05226140.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium intracellulare ATCC 13950] Length = 446 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/395 (50%), Positives = 265/395 (67%), Gaps = 7/395 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75 +L G ++ + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + Sbjct: 28 TLETYRRHGGYEAMKKALAMEPDAVIGVVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAA 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD +M PH L+EG +IA++AI A+ AFIYVRGE + Sbjct: 88 KPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRANHAFIYVRGEVLPVLRR 147 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQ AV E YA+G LG + + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 148 LQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 208 FPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 267 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ GS Sbjct: 268 EAPLGITLRELL-AYAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGGAGSM 324 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G + Sbjct: 325 LGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDKIYERLEAGTGTHED 384 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L ++S +I G+ CALGD AA P+ I+ FR Sbjct: 385 LDKLLDISDSILGKAFCALGDGAASPVMSSIQYFR 419 >gi|325954439|ref|YP_004238099.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922] gi|323437057|gb|ADX67521.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922] Length = 453 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 209/411 (50%), Positives = 275/411 (66%), Gaps = 19/411 (4%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + N +K + + I+ EVK SGLRGRGGAGF TGMKWSF+ K P +LVVNADE Sbjct: 25 GGYSNAEKAFKMKEEEILEEVKTSGLRGRGGAGFPTGMKWSFLAKP-EGVPRHLVVNADE 83 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGT KDR +M + PH LIEG +I+SF +G++ +FIY+RGE+ E L+ A+DE A+ Sbjct: 84 SEPGTFKDRYLMEYIPHLLIEGILISSFCLGSNTSFIYIRGEYAWIAEILEQAIDEAKAA 143 Query: 147 GLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G LG N + G+D+++ V GAGAYICGEETALLESLEGK+G PR+KPPFPA GL+G P Sbjct: 144 GWLGKNIQGTGFDLEVYVQRGAGAYICGEETALLESLEGKRGNPRIKPPFPAVKGLWGRP 203 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVE+IA V I+ G YS G + GTKL S G++N P E M+IT +E Sbjct: 204 TVVNNVETIASVVPIIEIGGDAYSKIGVGRSTGTKLISACGNINKPGVYEIDMTITVEEF 263 Query: 266 I--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE----M 311 I +++CGGI G L A IPGGSSVP LPA GQ R M+Y+ L E Sbjct: 264 IYSDEYCGGIANG-KRLKACIPGGSSVPILPANLLLRTTNGQPR--YMNYESLAEGGFQS 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ IV+D DI+ + L+ FY+HESCGQC+PCREGTGWM ++++R+ +G + Sbjct: 321 GTMMGSGGFIVLDEDQDIVYHTYTLARFYRHESCGQCSPCREGTGWMEKLLKRIDEGKGK 380 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +I+LL+++ + IEG TIC LGDAAAWP+ I++FR E I+ C Sbjct: 381 ISDIELLWDIQRKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHINHPEEC 431 >gi|238028138|ref|YP_002912369.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Burkholderia glumae BGR1] gi|237877332|gb|ACR29665.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Burkholderia glumae BGR1] Length = 438 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/417 (50%), Positives = 278/417 (66%), Gaps = 9/417 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I NL G + L D ++RG + + +I+E+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILANLNG-ENWRLEDYVARGGYQQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGT KDRDI+R PH +IEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHAVIEGMAIGAYAMGITAGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183 GE +AA++E A+G LG+N LG + + HHG GAY+CGEETALLESLE Sbjct: 131 HGEIFEVYRRFEAALEEARAAGYLGANI-LGSEFSFQLHAHHGYGAYVCGEETALLESLE 189 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS Sbjct: 190 GKKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQHYLELGKPNNGGTKIFS 249 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E + F L+E GG+RGG L AVIPGGSS P +P M M Sbjct: 250 VSGDVERPGNYEVPLGTPFSALLEL-AGGMRGG-RKLKAVIPGGSSAPVIPGDTMMQIDM 307 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV++ Sbjct: 308 DYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVK 367 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+ G +K ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 368 RIEDGQGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|257054397|ref|YP_003132229.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017] gi|256584269|gb|ACU95402.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017] Length = 424 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/382 (52%), Positives = 257/382 (67%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + K L + ++ +K SGLRGRGGAGF G+KWSFMP+ D+PHYLV+NADE E Sbjct: 26 YTALRKALSGTPEQLVQLIKDSGLRGRGGAGFPAGVKWSFMPQ-NDDKPHYLVINADEGE 84 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M +PH+LIEGC+IAS+A+ AH FIYVRGE + L +AV E Y +G Sbjct: 85 PGTCKDIPLMMADPHSLIEGCIIASYAMRAHRCFIYVRGEALHPIRRLNSAVREAYEAGY 144 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G+D+DI VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA+ GLY PTT Sbjct: 145 LGKNILGSGFDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPASAGLYAAPTT 204 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+IA VP I+ GA W+ G E + G K++SISGHV P E + T +L+E Sbjct: 205 VNNVETIASVPYIVNGGAEWFRKMGTEKSPGPKIYSISGHVEKPGQYEAPLGTTLRQLLE 264 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG++ G L PGGSS P A + +D++G E GS LGT AV V + + Sbjct: 265 -MAGGMKDGIP-LKFWTPGGSSTPLFTAEHID-VPLDFEGAAEAGSMLGTTAVQVFNETV 321 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 + A+ + + FYKHESCG+CTPCREGT W+ +++ER+V G + +ID L ++ NI G Sbjct: 322 SVPWAVMKWTQFYKHESCGKCTPCREGTYWLTQILERMVDGRGTESDIDTLLDICDNILG 381 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 R+ CALGD A PI IK FR Sbjct: 382 RSFCALGDGATSPITSAIKYFR 403 >gi|326799005|ref|YP_004316824.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21] gi|326549769|gb|ADZ78154.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21] Length = 450 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 207/403 (51%), Positives = 265/403 (65%), Gaps = 16/403 (3%) Query: 25 SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 +G + V+K L+ + ++ EVK SGLRGRGGAGF TGMKWSF+ K P YLV N Sbjct: 23 QKGGYRAVEKALKTLSPEEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCN 81 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR +M H PH LIEG ++AS+A+GA+ ++IYVRGE + + L+ A++E Sbjct: 82 ADESEPGTFKDRYLMTHIPHALIEGMIVASYALGANTSYIYVRGEMMPQIRILERAIEEA 141 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 A+G LG+N GY++++ V G GAYICGEETALLESLEGK+G PR+KPPFPA GLY Sbjct: 142 KAAGFLGTNILGTGYNLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAVAGLY 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 CPT VNNVESIA IL G Y+ G E + GTKL S SG++N P E + + Sbjct: 202 NCPTVVNNVESIAATVPILNMGGEEYAKIGIERSTGTKLISASGNINKPGVYEIELGLPV 261 Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLKE---- 310 +E I +++CGGI G L AV+ GGSSVP LPA + +M Y+ L + Sbjct: 262 EEFIYSDEYCGGITNG-KRLKAVVAGGSSVPILPANLILKTAKGENRLMTYESLADGGFA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ LG+ IV D I++ W + FY HESCGQC+PCREGTGWM +V+ RL G Sbjct: 321 TGTMLGSGGFIVFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTGWMEKVLHRLEYGHG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + +IDLL +VSK IEG TIC LGDAAAWP+ I++FR E Sbjct: 381 KMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFE 423 >gi|298370378|ref|ZP_06981694.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281838|gb|EFI23327.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 431 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + +IL + + +I++VK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 22 TLDEYVKRGGYSALRRILSENISQTDVIDQVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +AA+ + A+G LG N LG ++ ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 141 EAALAQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G ++ G N GTKLF ISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F E++ K GG+RGG L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + + Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL V + GRTICAL DAA +P++ K+FR Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412 >gi|161524209|ref|YP_001579221.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans ATCC 17616] gi|189351034|ref|YP_001946662.1| NADH dehydrogenase I subunit F [Burkholderia multivorans ATCC 17616] gi|221199661|ref|ZP_03572705.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2M] gi|221205439|ref|ZP_03578454.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2] gi|221211740|ref|ZP_03584719.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD1] gi|160341638|gb|ABX14724.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans ATCC 17616] gi|189335056|dbj|BAG44126.1| NADH dehydrogenase I chain F [Burkholderia multivorans ATCC 17616] gi|221169101|gb|EEE01569.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD1] gi|221174277|gb|EEE06709.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2] gi|221180946|gb|EEE13349.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2M] Length = 436 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 209/403 (51%), Positives = 275/403 (68%), Gaps = 10/403 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G++ L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+KWS Sbjct: 14 LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E +AA++E A+G LG N +G + + HHG GAYICGEETALLESLEGK Sbjct: 133 EIFEVYRRFEAALEEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+S Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLELGKPNNGGTKIFSVS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E + F L+E GG+RGG + AVIPGGSS P +P M MDY Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDIMMQTDMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + ++GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R+ Sbjct: 310 DSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHY 412 >gi|88812971|ref|ZP_01128214.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231] gi|88789749|gb|EAR20873.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231] Length = 427 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/395 (52%), Positives = 271/395 (68%), Gaps = 7/395 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + G + + K+ E+ + +I E+K S LRGRGGAGF TG+KWSFMP+ + Sbjct: 17 TLDNYRKVGGYQALQKLFEQKVKPEEVIEEIKRSALRGRGGAGFPTGIKWSFMPRNAPGQ 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER-ES 135 Y+V N+DESEPGTCKDRDI+R+ PH LIEG VIA +A+G + Y+RGEF+RE + Sbjct: 77 -KYIVCNSDESEPGTCKDRDILRYNPHALIEGMVIAGYAMGVSVGYNYLRGEFMREPFQR 135 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ A+DE A+G +G N + G+ + +GAGAYICGEE+ LLESLEGKKG PR KPP Sbjct: 136 MEQALDEARAAGYIGENIQGRGFGFQLHNVYGAGAYICGEESGLLESLEGKKGMPRYKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLYG PTTVNN E+ A VP+I+R GA W+ GR NN G K FS+SGHV P Sbjct: 196 FPAQFGLYGRPTTVNNTETFASVPSIIRNGAEWFLELGRPNNGGVKCFSVSGHVVKPGNY 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F EL+ K GG+R L AVIPGGSS+P +P QM MDYD L + GSG Sbjct: 256 EVPLGTPFRELL-KMAGGVRDE-HKLKAVIPGGSSMPMVPGDQMLELDMDYDSLVKAGSG 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ V+VMD +TD+IK I R+S FY ESCGQCTPCREG GWM RV++R+ +G + + Sbjct: 314 LGSGGVVVMDETTDMIKVILRISRFYYAESCGQCTPCREGCGWMYRVIKRIYEGKGRMAD 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++LL + I G TICA G+AAAWP+Q ++K++R Sbjct: 374 LELLESAAGQIAGHTICAFGEAAAWPVQSVLKHWR 408 >gi|326382758|ref|ZP_08204448.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL B-59395] gi|326198348|gb|EGD55532.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL B-59395] Length = 459 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/396 (50%), Positives = 265/396 (66%), Gaps = 8/396 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC----S 74 +L + + + + L D +I +VKASGLRGRGGAGF G KWSF+P+ + Sbjct: 30 TLRSYLRQNGYQGLKSALRLSPDEVIEQVKASGLRGRGGAGFPVGTKWSFIPQGPRPGGA 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D PHYLVVNADESEPGTCKD +M PHTLIEG +IA++AI AH AFIYVRGE Sbjct: 90 DTPHYLVVNADESEPGTCKDMPLMLASPHTLIEGVIIAAYAIRAHHAFIYVRGEVAGVIR 149 Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ AVDE Y++GL+G + G+ +D++VH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 150 RLRTAVDEAYSAGLIGRDIFGSGFGMDLVVHAGAGAYICGEETALLDSLEGRRGQPRLRP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY PT VNNVESIA VP+I+R G+ W+ FG E + G ++S+SGHV P Sbjct: 210 PFPAVAGLYASPTVVNNVESIASVPSIMRNGSDWFREFGTEKSPGFTMYSLSGHVARPGQ 269 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + IT EL++ GG+R G L PGGSS P A + +DY+G+ GS Sbjct: 270 YEAPLGITLRELLDL-AGGVRAG-HQLKFWTPGGSSTPMFTAEHLD-VPLDYEGVGGAGS 326 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ + D + +++A+ R + FY HESCG+CTPCREGT WM+++M RL G + Sbjct: 327 MLGTKAIQIFDETVCVVRAVLRWTEFYAHESCGKCTPCREGTYWMVQMMRRLEAGEGTED 386 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ L E++ ++ G++ CALGDA+ PI + +FR Sbjct: 387 DLTTLTEITDSVVGKSFCALGDASGAPITSSLAHFR 422 >gi|217970161|ref|YP_002355395.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T] gi|217507488|gb|ACK54499.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T] Length = 439 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/421 (50%), Positives = 277/421 (65%), Gaps = 8/421 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59 ++ Q I G + L D ++RG + + KIL + +D II E+K S LRGRGGAG Sbjct: 1 MSTQGMILAGCDGDRTWRLQDYVARGGYSALRKILAEKIPQDAIIAELKTSVLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSFMP+ YL N+DE EPGT KDRDI+R+ PH++IEG IA++A+GA Sbjct: 61 FPTGLKWSFMPRSFPGD-KYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGAA 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177 + Y+ GE + A+ E + +G +G N LG D ++ HHG GAYICGEETA Sbjct: 120 RGYNYIHGEIFETYSRFEEALAEAHEAGFIGRNI-LGSDFSFELFAHHGYGAYICGEETA 178 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLES+EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G + G+ NN Sbjct: 179 LLESIEGKKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIMNMGGEAFLNLGKPNNG 238 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G KLFS+SGHVN P E + F EL+E GG+RGG + AVIPGGSS P +P G Sbjct: 239 GMKLFSVSGHVNRPGNYEIPLGTPFAELLEM-AGGMRGG-RKIKAVIPGGSSAPVVPGGV 296 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M MDYD + + GS LG+ AVIVMD +T +++A+ RLS FY ESCGQCTPCREGTGW Sbjct: 297 MMDCTMDYDSISKAGSMLGSGAVIVMDETTCMVRALERLSYFYFEESCGQCTPCREGTGW 356 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV+ R+ G+ + ++DLL V+ NI GRTICALGDAA+ P+Q +K+F E I+ Sbjct: 357 LYRVVHRIEHGLGRPDDLDLLNSVTTNIMGRTICALGDAASMPVQSFVKHFGSEFEYHIE 416 Query: 418 Q 418 Sbjct: 417 N 417 >gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM 43247] gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM 43247] Length = 706 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/396 (50%), Positives = 266/396 (67%), Gaps = 10/396 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 +L + + + + K L+ D II +KASGLRGRGGAGF GMKWSF+P+ SD P Sbjct: 286 TLDNYLQHNGYQGLRKALDTPPDDIIELIKASGLRGRGGAGFPVGMKWSFIPQ--SDDPD 343 Query: 78 ---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 HYLVVNADESEPGTCKD +M PH+L+EG +IA++AI AH AFIYVRGE Sbjct: 344 APPHYLVVNADESEPGTCKDMPLMLASPHSLVEGVIIAAYAIRAHHAFIYVRGEVASVIR 403 Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ AVD+ YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 404 RLRTAVDDAYAAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRP 463 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY PT VNNVESIA VP I+R G W+ G E + G L+S+SGHV P Sbjct: 464 PFPAVAGLYASPTVVNNVESIASVPPIIRNGVDWFRSMGTEKSPGFTLYSLSGHVERPGQ 523 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E ++ +T EL+++ GG+R G L PGGSS P L A + +DY+G+ GS Sbjct: 524 YEAALGVTLRELLDR-AGGVRAG-HQLKFWTPGGSSTPLLTAEHL-DVPLDYEGVGAAGS 580 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ + D +T ++ A+ R + FY HESCG+CTPCREGT W++++++RL Sbjct: 581 MLGTKALQIFDETTCVVGAVLRWTQFYAHESCGKCTPCREGTYWLVQLLKRLETEGGTTA 640 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++D L +V+ +I G++ CALGD A PI +K FR Sbjct: 641 DLDTLADVTNSIVGKSFCALGDGAGSPIVSSLKYFR 676 >gi|24213590|ref|NP_711071.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans serovar Lai str. 56601] gi|24194382|gb|AAN48089.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans serovar Lai str. 56601] Length = 443 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/390 (49%), Positives = 263/390 (67%), Gaps = 4/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + K L+ D II EVK SGLRGRGGAGF TG+KWSF+PK +P Y++ NADE E Sbjct: 28 YDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++ + PH +IEG +I + AIG++ F Y+RGEF + +++QAA+DE Y+ G Sbjct: 87 PGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGY 146 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G+D D+I++ GAGAYICGEETAL+ SLEG++G PRLKPPFPA GLY PT Sbjct: 147 LGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTV 206 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+ + +P IL +GA WYS G E + GT+LFS+SGHV P E + EL+ Sbjct: 207 VNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVN 266 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 CGGI L A+IPGGSSVP L A + + A MD++ + + LG+ AVIV+ T Sbjct: 267 DLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGT 325 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE- 386 DI++ +R + FY HESCGQCTPCREGT W+ ++ ++ +G +IDL++ +S+N+E Sbjct: 326 DIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEG 385 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G TIC L DA ++ ++ FR + ++ Sbjct: 386 GTTICPLSDACVGAVRPALQKFRSEFDAKL 415 >gi|320107665|ref|YP_004183255.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4] gi|319926186|gb|ADV83261.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4] Length = 440 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/416 (47%), Positives = 266/416 (63%), Gaps = 5/416 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+ +I + +G + + + V + G +W+I E+KASGLRGRGGAGF TG Sbjct: 9 DEVKILSRRFGQGAAEIEKYVEMDGYKAVQNAITNGPEWVITEMKASGLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+PKV S++P Y++VN DESEPGTCKD I H+PH +IEG +IA AIGA FI Sbjct: 69 LKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAVIEGTMIAGLAIGAKMGFI 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGE+ + ++ AV + YA G LG N G D DI+ GAGAY GEE+AL+ES Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGYLGKNIFGHEGVDFDIVTQTGAGAYEVGEESALMES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G PR+KPPFPA VGLYG PT +NN E+IA P IL G Y+ G E N GT+L Sbjct: 188 LEGKRGIPRIKPPFPAIVGLYGGPTVINNAETIASAPPILLMGGEAYAKVGSERNGGTRL 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ISGHVN P E M + + I + GGI+GG L AV+PGGSS P L ++ Sbjct: 248 FGISGHVNKPGVYELPMGYSLRKAIYEVAGGIKGG-RALKAVVPGGSSCPVLLPEEIDVG 306 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D + + G+ LG+ ++V+D + I++ R FY+HESCG C PCREGT W+++ Sbjct: 307 -LDFDQMGKAGTMLGSGGIVVLDETVSIVEFAMRTMKFYQHESCGWCIPCREGTDWLLKT 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R G K++I+ + +++N+ GRT C LGDAAA P G IK FR EE ++ Sbjct: 366 LTRFYDGGGNKKDINNIQYLAENMMGRTFCPLGDAAAMPTLGFIKKFRHEFEEYLE 421 >gi|45658580|ref|YP_002666.1| NADH dehydrogenase subunit I F [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601824|gb|AAS71303.1| NADH dehydrogenase I F subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 443 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/390 (49%), Positives = 263/390 (67%), Gaps = 4/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + K L+ D II EVK SGLRGRGGAGF TG+KWSF+PK +P Y++ NADE E Sbjct: 28 YDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++ + PH +IEG +I + AIG++ F Y+RGEF + +++QAA+DE Y+ G Sbjct: 87 PGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAIQAAIDEAYSKGY 146 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G+D D+I++ GAGAYICGEETAL+ SLEG++G PRLKPPFPA GLY PT Sbjct: 147 LGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTV 206 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+ + +P IL +GA WYS G E + GT+LFS+SGHV P E + EL+ Sbjct: 207 VNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVN 266 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 CGGI L A+IPGGSSVP L A + + A MD++ + + LG+ AVIV+ T Sbjct: 267 DLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGT 325 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE- 386 DI++ +R + FY HESCGQCTPCREGT W+ ++ ++ +G +IDL++ +S+N+E Sbjct: 326 DIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEG 385 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G TIC L DA ++ ++ FR + ++ Sbjct: 386 GTTICPLSDACVGAVRPALQKFRSEFDAKL 415 >gi|262195156|ref|YP_003266365.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM 14365] gi|262078503|gb|ACY14472.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM 14365] Length = 445 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/436 (47%), Positives = 276/436 (63%), Gaps = 28/436 (6%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q ++ T +G + ++++ + G + + L R+ I+ EVKAS LRGRGGAGF TG Sbjct: 6 QTKVVTQHFGKDEARTIAGYETLGGYAVAKRALGMAREQILAEVKASNLRGRGGAGFPTG 65 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F+P D +LV NADESEPGTCKDR+++ +PH LIEG ++++ A+GA +I Sbjct: 66 VKWGFVPAGSKDV--HLVCNADESEPGTCKDRELLFWDPHRLIEGMIVSAHALGAVHNYI 123 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE +RE LQ AV E Y G LG N G + VH GAGAYICGEETALL SL Sbjct: 124 YIRGEMMREVLVLQDAVREAYERGYLGDNIFGTGKACHLTVHRGAGAYICGEETALLNSL 183 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR--GTK 240 EG +GQPRLKPPFPA GL+G PT VNNVE++ VPTI+ +G +W++ G E R GT+ Sbjct: 184 EGLRGQPRLKPPFPAVKGLFGNPTVVNNVETLMNVPTIIDKGGAWFAALGPEGGRSGGTR 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL------- 293 + +SGHV P E M+ITF++LI++ CGG+ G + AVIPGGSS+P L Sbjct: 244 IVCVSGHVEKPGVYELPMTITFNQLIDEVCGGVWKG-RKVKAVIPGGSSMPPLTAEELDV 302 Query: 294 --------------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 P +RG D G + + + G+ ++VMD TD++KA WR+ F Sbjct: 303 PIEFDALMTDERIRPVEVLRGQQFDMGGGRALRTMAGSGGIVVMDDHTDVVKACWRIMKF 362 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y HESCGQCTPCREGTGW+ ++ R+ G + +IDLL ++S I G +ICALG+AAAW Sbjct: 363 YAHESCGQCTPCREGTGWLEQICRRVAHGGGKPGDIDLLAQISHGIAGNSICALGEAAAW 422 Query: 400 PIQGLIKNFRPLIEER 415 P+ G I FR E + Sbjct: 423 PMMGFITKFRDEFEAK 438 >gi|288917188|ref|ZP_06411557.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f] gi|288351379|gb|EFC85587.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f] Length = 445 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/382 (52%), Positives = 262/382 (68%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + + L + D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLV+NADE E Sbjct: 28 YQGLRRALAQAPDDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M+ +PH+LIEG VIA++A+ A+ AFIY+RGE I L+AAV E Y +G Sbjct: 87 PGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLRGELIHAARRLRAAVAEAYEAGY 146 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY PT Sbjct: 147 LGRDILGSGFDLELVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTV 206 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+IA VP I+ G W+ GRE G K++S+SGHV P E M T EL+E Sbjct: 207 VNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLSGHVTRPGQYEAPMGTTLRELLE 266 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+ GG L A PGGSS P L A + +D++G++E GS LGTAA+++MD + Sbjct: 267 M-AGGVLGG-RKLKAWTPGGSSTPLLTADHLD-VPLDFEGVQEAGSLLGTAALMIMDETV 323 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D++ + RL+ FY HESCG+CTPCREGT WM++++ R+ +G ++D L + NI G Sbjct: 324 DMLPVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRMERGHGDSDDVDTLVDACDNIFG 383 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 R CAL D A PI IK+FR Sbjct: 384 RAFCALADGATSPIVSGIKHFR 405 >gi|330817787|ref|YP_004361492.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia gladioli BSR3] gi|327370180|gb|AEA61536.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia gladioli BSR3] Length = 439 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/417 (49%), Positives = 277/417 (66%), Gaps = 9/417 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I NL G + L D ++RG + + +I+E+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILANLNG-ENWRLEDYVARGGYKQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + YLV N+DE EPGT KDRDI+R PH++IEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHSVIEGMAIGAYAMGITAGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183 GE + A++E A+G LG+N LG + + HHG GAY+CGEETALLESLE Sbjct: 131 HGEIFEVYRRFEEALEEARAAGYLGNNI-LGSEFSFQLHAHHGYGAYVCGEETALLESLE 189 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK++S Sbjct: 190 GKKGQPRFKPPFPASFGVYGKPTTINNAETFAAVPFLLTVGPQAYLEIGKPNNGGTKIYS 249 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E + F L+E GG+RGG L AVIPGGSS P +P M M Sbjct: 250 VSGDVERPGNYEVPLGTPFAALLEL-AGGMRGG-RKLKAVIPGGSSAPVIPGEMMMQTDM 307 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV++ Sbjct: 308 DYDSIAKAGSMLGSGAVIVMDETRCMVRSLMRLSYFYHEESCGQCTPCREGTGWLYRVVK 367 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+ G + ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 368 RIENGEGRVEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|329118904|ref|ZP_08247599.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC BAA-1200] gi|327464932|gb|EGF11222.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC BAA-1200] Length = 431 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/394 (51%), Positives = 263/394 (66%), Gaps = 6/394 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + RG + + KIL + +D +I EVK SGLRGRGGAGF +G+KWSFMP+ Sbjct: 22 TLDAYLQRGGYQALRKILSENTSQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSFPGE 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE EPGT KDRDI+ + PH LIEG +I +A+GA + Y+ GE + Sbjct: 82 -KYVVCNTDEGEPGTFKDRDIILYNPHALIEGMIIGGYAMGAAAGYNYIHGEIFEGYQRF 140 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + A+G LG N G++ ++ HHG GAYICGEETALLESLEGKKGQPR KPPF Sbjct: 141 EQALAQARAAGYLGQNILGSGFNFELYAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GL+G PTT+NN E+ + VP I+R G ++ G EN GTKLFSISGHV P E Sbjct: 201 PASFGLFGKPTTINNTETFSSVPFIIRDGGKTFADKGIENAGGTKLFSISGHVERPGNYE 260 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F EL+E GG++ G L AVIPGGSS P +P M MDYD + + GS L Sbjct: 261 VPLGTPFAELLEM-AGGMKNG-KKLKAVIPGGSSSPVIPGDVMMTLNMDYDSIAKAGSML 318 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V G + ++ Sbjct: 319 GSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIVHRIVNGQGKMEDL 378 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 DLL V N+ GRTICAL DAA +P++G +K++R Sbjct: 379 DLLESVGNNMAGRTICALADAAVFPVRGFMKHYR 412 >gi|271962160|ref|YP_003336356.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505335|gb|ACZ83613.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 428 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/384 (51%), Positives = 258/384 (67%), Gaps = 5/384 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADE Sbjct: 24 GDYSAARKALGMDPDAVIQAVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVVNADE 82 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGTCKD +M PH+L+EG +I S+AI A+ AFIYVRGE + LQAAV E Y Sbjct: 83 SEPGTCKDIPLMMANPHSLVEGIIITSYAIRANHAFIYVRGEVLHVIRRLQAAVAEAYDK 142 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GLLG + G+D++++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA GLY P Sbjct: 143 GLLGKDLFGSGFDLELVVHSGAGAYICGEETALLDSLEGYRGQPRLKPPFPAVAGLYASP 202 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVES+A VP+I+ GA W++G G E ++G +FS+SGHV P E + IT EL Sbjct: 203 TVVNNVESVASVPSIISNGAEWFAGMGTEKSKGFGIFSLSGHVTRPGQYEAPLGITLREL 262 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 ++ GGIR G + PGGSS P + +D++ + GS LGT A+ + D Sbjct: 263 LDM-AGGIREG-HQIKFWTPGGSSTPIFTDEHLD-VPLDFESVGAKGSMLGTRALQIFDE 319 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +T +++A+ R + FY HESCG+CTPCREGT W+ +V++RL KG + ++ + +++ NI Sbjct: 320 TTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLKRLEKGQGTEEDLTTITDIADNI 379 Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409 GR+ CALGD A PI +K FR Sbjct: 380 LGRSFCALGDGATSPIHSSVKYFR 403 >gi|108760787|ref|YP_629345.1| NADH dehydrogenase I subunit F [Myxococcus xanthus DK 1622] gi|108464667|gb|ABF89852.1| NADH dehydrogenase I, F subunit [Myxococcus xanthus DK 1622] Length = 446 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 209/420 (49%), Positives = 275/420 (65%), Gaps = 16/420 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q +L RG ++ + K L+ II+EVK S LRGRGGAGF TG+KWSF+PK S Sbjct: 20 QSWTLDSYRKRGGYEALKKALQMEPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-SP 78 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YL VN DESEPGT KDR I+ +PH ++EG IAS+A+G H ++Y+RGEF E Sbjct: 79 KPKYLAVNGDESEPGTFKDRYILEDDPHMMLEGIAIASYALGVHTCYVYLRGEFKFPAER 138 Query: 136 LQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 QAA+DE Y +G+ G LG Y+++ + GAGAYICGEETALLESLEGKKG PRLKP Sbjct: 139 TQAAIDEAYKAGIFGKKV-LGKDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKP 197 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA VGL+GCPT VNNVE++A VP I ++GA Y+ G + + GT+L +SG VN P Sbjct: 198 PFPAVVGLFGCPTVVNNVETLASVPAIFQQGAEAYAKLGTDKSGGTRLVCLSGTVNRPGV 257 Query: 254 VEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E SM T ELI +K+ G+ G + AVIPGGSS P L A ++ A M+++ LK Sbjct: 258 YEVSMFTTLSELIFDDKYGRGMPAG-RKVKAVIPGGSSAPVLGADELDVA-MEFEALKVK 315 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 + G+ VIVMD +T +++++WR++ FY ESCGQCTPCREGT W R++ ++ +G + Sbjct: 316 QTMAGSGGVIVMDDTTCMVRSLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGE 375 Query: 372 KREIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +ID+L V+ +I G TICALGDAAA P + FR E I + HRC F Sbjct: 376 PGDIDMLSNVASSIAPYPPIGLGNTICALGDAAALPTHSFLMRFRDEFEAHIRE-HRCPF 434 >gi|319950456|ref|ZP_08024370.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4] gi|319435879|gb|EFV91085.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4] Length = 466 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/401 (50%), Positives = 261/401 (65%), Gaps = 13/401 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK------- 71 +L + G + + L D +I+ V SGLRGRGGAGF TG KW F+P+ Sbjct: 18 TLQAYLDNGGYSGLRTALAAEPDEVISTVLDSGLRGRGGAGFPTGRKWGFIPQDTGADAA 77 Query: 72 --VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 + RPHYLVVNADESEPGTCKD +M PH LIEG +IA++AI A AFIY+RGE Sbjct: 78 DPSAAARPHYLVVNADESEPGTCKDMPLMLATPHVLIEGVIIAAYAIRASRAFIYLRGEV 137 Query: 130 IRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + LQ AV E Y +G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQ Sbjct: 138 VPVLRRLQTAVAEAYEAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 197 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PRL+PPFPA GLY CPT VNNVES+A VP+IL+ G W+ G E + G L+S+SGHV Sbjct: 198 PRLRPPFPAVAGLYACPTVVNNVESLASVPSILQHGPEWFRSMGSEKSPGFTLYSLSGHV 257 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + IT EL++ GGIR G L PGGSS P L Q+ +DY+G Sbjct: 258 TRPGQYEAPLGITLRELLDL-AGGIRDG-HTLKFWTPGGSSTPLLTDAQL-DMPLDYEGC 314 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 G+ LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++M RL G Sbjct: 315 AAEGTMLGTKALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTFWLRQIMTRLEDG 374 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 A E+D L ++S NI G++ CALGDAAA PI I+ FR Sbjct: 375 TATADELDRLLDISDNIVGKSFCALGDAAAAPIVSSIRLFR 415 >gi|320354158|ref|YP_004195497.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032] gi|320122660|gb|ADW18206.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032] Length = 423 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/393 (48%), Positives = 260/393 (66%), Gaps = 3/393 (0%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G + +DK+ + +I VKASGLRGRGGAGF TG+KWSF+PK D+P YL VN+D Sbjct: 24 HGAYATLDKVFAMQPEEVIELVKASGLRGRGGAGFPTGLKWSFLPKNI-DKPVYLAVNSD 82 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEP T KDR I+ +PH LIEG +I +AI +H A+IY+RGE+ + ++LQAA+DE YA Sbjct: 83 ESEPATFKDRYILVRDPHMLIEGIIICCYAIKSHAAYIYIRGEYTTQVKALQAAIDEAYA 142 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG + Y +D+ VH GAGAY+CGEETALLES+EG+KGQPR KPPFPA GLYGC Sbjct: 143 AGYLGDTIAGKDYKLDVTVHRGAGAYVCGEETALLESIEGRKGQPRSKPPFPAVEGLYGC 202 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNV+SIA +P IL G+ Y +G E + GT LF ISG V P E + + E Sbjct: 203 PTIINNVQSIASLPFILANGSDAYKAYGTEKSPGTHLFGISGLVKKPGMYELPLGLPLLE 262 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 +I+K GG+R G L VIPGGSS P L + + +DY+ + + G+ ++V+D Sbjct: 263 VIDKVAGGVRDGR-KLKGVIPGGSSTPVLTPEEAQTVTLDYESMAAHKTMFGSGGIVVLD 321 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 + D++K + L FY HESCGQCTPCREG GWM+++++++++G +IDLL E+ N Sbjct: 322 DTVDMVKLVENLIYFYHHESCGQCTPCREGLGWMLKIVKKIIRGEGTIADIDLLTELCDN 381 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 IE +T+C L A + + FR E ++ Sbjct: 382 IEMKTVCVLSAACTMSTRSYLNKFRHEFEAYVN 414 >gi|296268278|ref|YP_003650910.1| NADH-quinone oxidoreductase subunit F [Thermobispora bispora DSM 43833] gi|296091065|gb|ADG87017.1| NADH-quinone oxidoreductase, F subunit [Thermobispora bispora DSM 43833] Length = 428 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/384 (52%), Positives = 255/384 (66%), Gaps = 5/384 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + K L D II VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADE Sbjct: 24 GDYSAARKALSMDPDTIIQMVKDSGLRGRGGAGFPTGMKWGFIPQ-NDGKPHYLVVNADE 82 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGTCKD +M PH LIEG +I S+AI A+ AFIYVRGE + LQAAV E Y + Sbjct: 83 SEPGTCKDIPLMMANPHALIEGAIITSYAIRANHAFIYVRGEVLHVIRRLQAAVREAYEA 142 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G LG N GYD++++VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY CP Sbjct: 143 GYLGRNIFGSGYDLELVVHCGAGAYICGEETALLDSLEGRRGQPRLKPPFPAVAGLYACP 202 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NNVES+A VP+I+ G W++ G E ++G +FS+SGHV P E + IT EL Sbjct: 203 TVINNVESVATVPSIVANGPEWFASMGTEKSKGFGIFSLSGHVARPGQYEAPLGITLREL 262 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 +E GGIR G L PGGSS P + +D++ + GS LGT A+ + D Sbjct: 263 LEM-AGGIRAG-HRLKFWTPGGSSTPIFTEEHLD-VPLDFESVAANGSMLGTRAIQIFDE 319 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL KG + ++ + +++ NI Sbjct: 320 TTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLYRLEKGQGTEEDLATITDIADNI 379 Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409 GR+ CALGD A I +K FR Sbjct: 380 LGRSFCALGDGATSSIHSSVKLFR 403 >gi|332662318|ref|YP_004445106.1| NADH-quinone oxidoreductase subunit F [Haliscomenobacter hydrossis DSM 1100] gi|332331132|gb|AEE48233.1| NADH-quinone oxidoreductase, F subunit [Haliscomenobacter hydrossis DSM 1100] Length = 452 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/407 (50%), Positives = 268/407 (65%), Gaps = 22/407 (5%) Query: 24 MSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 + G + V+K L+K + D + EVK SGLRGRGGAGF TGMKWSF+ K +D+P YL+ Sbjct: 23 IKHGGYRAVEKALKKMQPDEVTEEVKKSGLRGRGGAGFPTGMKWSFIFK-GNDKPRYLLC 81 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 NADESEPGT KDR +M PH LIEG + +SFA+G A+IY+RGE++ LQ A+DE Sbjct: 82 NADESEPGTFKDRLLMEKIPHLLIEGMIASSFALGVKTAYIYIRGEYMYILHILQKAIDE 141 Query: 143 CYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 YA G LG N LG Y +D+ VH G GAYICGEETAL+ESLEGK+G PR+KPPFPA G Sbjct: 142 AYAKGYLGENI-LGTTYSLDLHVHPGGGAYICGEETALIESLEGKRGNPRIKPPFPAVEG 200 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 L+GCPT VNNVE+I VP I+ G Y+ G + GTKL S G++N P E + + Sbjct: 201 LWGCPTIVNNVETICKVPFIINEGGETYANIGIGASTGTKLISACGNINKPGVYEIELGV 260 Query: 261 TFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLP--------AGQMRGAIMDYDGLKE 310 +E I +++CGGI+GG L A++PGGSSVP LP G+ R +M Y+ L + Sbjct: 261 PVEEFIYSDEYCGGIKGG-KQLKALVPGGSSVPILPNRLITKTAKGEPR--LMSYESLSD 317 Query: 311 ----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 GS LG+ IV D I++ W S FY HESCGQC+PCREGTGWM +++ R+ Sbjct: 318 GGFPTGSMLGSGGFIVFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKILHRME 377 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 G + +IDLL++V + IEG TIC GDA+AWP+ I++FR E Sbjct: 378 YGHGRMEDIDLLWDVQRKIEGNTICPFGDASAWPVAAAIRHFRDEFE 424 >gi|78485167|ref|YP_391092.1| NADH-quinone oxidoreductase, F subunit [Thiomicrospira crunogena XCL-2] gi|78363453|gb|ABB41418.1| NADH dehydrogenase I chain F [Thiomicrospira crunogena XCL-2] Length = 426 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/382 (52%), Positives = 253/382 (66%), Gaps = 6/382 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+EVKAS +RGRGGAGF TG+KWSFM + P Y+V N+DE EPGT KDRDI+R+ P Sbjct: 45 IIDEVKASNIRGRGGAGFPTGLKWSFMNRAAPG-PKYIVCNSDEGEPGTFKDRDILRYNP 103 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +IA + IGA + Y+RGEF + Q A+D+ +G LG N GYD ++ Sbjct: 104 HALVEGMMIAGYVIGACAGYNYIRGEFWEPYQRFQGAIDQARKAGFLGKNILGSGYDFEL 163 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 H GAGAYICGEETAL+ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E++A +P IL Sbjct: 164 FTHLGAGAYICGEETALIESLEGKKGQPRFKPPFPASYGLYGKPTTINNTETLASIPMIL 223 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +G W+ G N GTK +S+SGHVN P E M F +L+E GGI G + L Sbjct: 224 AKGGDWFCDLGVPNAGGTKCYSVSGHVNNPGNFEVRMGTPFKDLLEL-AGGIWKGRE-LK 281 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AVIPGG+S LPA + MDYD + + GS LG +VI+MD TDI+K + LS FY Sbjct: 282 AVIPGGASTAILPAEKAMAMNMDYDSIAKAGSFLGAGSVIIMDDQTDIVKVMENLSHFYW 341 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQCTPCREGTGW+ RV++R+ G + +I+ L +VS I GR IC LGDAA + Sbjct: 342 DESCGQCTPCREGTGWLYRVLKRIRSGKGRPEDIEALKDVSGKIMGRVICGLGDAATIGL 401 Query: 402 QGLIKNFRPLIEERIDQYHRCN 423 ++++ ID H C+ Sbjct: 402 TSALEHYEHEFRHYID--HGCS 421 >gi|71275685|ref|ZP_00651970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon] gi|71897859|ref|ZP_00680085.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] gi|170729494|ref|YP_001774927.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12] gi|71163576|gb|EAO13293.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon] gi|71732414|gb|EAO34468.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] gi|167964287|gb|ACA11297.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12] Length = 444 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/405 (51%), Positives = 269/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF TG+K Sbjct: 21 IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + Y G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L A IPGG S+P L A Q++G M Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLQGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|171463531|ref|YP_001797644.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193069|gb|ACB44030.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 432 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/403 (52%), Positives = 270/403 (66%), Gaps = 10/403 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D SRG + + +++ D +I E+KAS LRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWCLKDYESRGGYQQLRRLINDKVAPDVVIAELKASSLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITVGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGK 185 E + A++E A+G LG + LG D +H G GAYICGEETALLESLEGK Sbjct: 133 EIFEVYSRFEEALEEARAAGYLG-DKILGSDFSFQLHASPGWGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL G Y G+ NN GTK+FSIS Sbjct: 192 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLDLGKLNNGGTKIFSIS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +P E + F EL+ K GG+R G L AVIPGGSS P +P QM MDY Sbjct: 252 GDVVHPGNYEIPLGTPFAELL-KLAGGMRDG-KALKAVIPGGSSSPVVPGAQMMELTMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVM+ + +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G + ++DLL +V+ NI+GRTICALGDAAA P++G++K++ Sbjct: 370 EHGEGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHY 412 >gi|171058190|ref|YP_001790539.1| NADH-quinone oxidoreductase subunit F [Leptothrix cholodnii SP-6] gi|170775635|gb|ACB33774.1| NADH-quinone oxidoreductase, F subunit [Leptothrix cholodnii SP-6] Length = 452 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 220/426 (51%), Positives = 278/426 (65%), Gaps = 16/426 (3%) Query: 5 QDR-IFTNLY-GLQGKS--LSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRG 54 DR I + +Y GL GK+ L+D +RG + + KIL D +I EVK SGLRG Sbjct: 22 HDRHINSQIYAGLNGKNWRLADYEARGGYQALRKILGADGGEGMTADQVIAEVKGSGLRG 81 Query: 55 RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114 RGGAGF TG+KWSFMP+ + YLV N+DE EPGTCKDRDI+R+ PH +IEG +IA++ Sbjct: 82 RGGAGFPTGLKWSFMPRALPVQ-KYLVCNSDEGEPGTCKDRDILRYNPHIVIEGMIIAAY 140 Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYIC 172 A+G + Y+ GE E + A++E A+G LG N LG +H HG GAYIC Sbjct: 141 AMGITVGYNYIHGEIFDAYERFEEALEEARAAGYLG-NQILGSRHTFQLHAFHGFGAYIC 199 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 GEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G Sbjct: 200 GEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECG 259 Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 + NN GTK+FS+ G V P E M F L+E G G L AVIPGGSS P Sbjct: 260 KPNNGGTKIFSMVGDVERPGNYEIPMGTPFSTLLELAGGVKGG--KKLKAVIPGGSSSPV 317 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 LPA M MDYD + + GS LG+ AVIVMD + ++K++ RLS FY HESCGQCTPCR Sbjct: 318 LPADVMMACTMDYDSISKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYSHESCGQCTPCR 377 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGTGW+ R+++R+ G + ++ LL V++NI GRTICALGDAAA P++ ++K+FR Sbjct: 378 EGTGWLWRIVDRIEHGHGRAEDLALLDNVAENIMGRTICALGDAAAMPVRAMLKHFRHEF 437 Query: 413 EERIDQ 418 I+ Sbjct: 438 VHHIEH 443 >gi|15836913|ref|NP_297601.1| NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa 9a5c] gi|9105133|gb|AAF83121.1|AE003884_6 NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa 9a5c] Length = 444 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/405 (51%), Positives = 268/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF TG+K Sbjct: 21 IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + Y G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L A IPGG S+P L A Q+ G M Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLHGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|71897771|ref|ZP_00679997.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] gi|71732326|gb|EAO34380.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] Length = 444 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/405 (51%), Positives = 268/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF TG+K Sbjct: 21 IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + Y G LG N G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L A IPGG S+P L A Q+ G M Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLHGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|116329149|ref|YP_798869.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330243|ref|YP_799961.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121893|gb|ABJ79936.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123932|gb|ABJ75203.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 444 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/393 (49%), Positives = 263/393 (66%), Gaps = 6/393 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D II EVK SGLRGRGGAGF TG+KWSF+PK S +P Y++ NADE E Sbjct: 28 YEGLKKALSMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDVS-KPKYIICNADEGE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++ + PH +IEG +I + AIG++ F Y+RGEF + ++QAA+DE Y+ G Sbjct: 87 PGTFKDRKLIENLPHQIIEGMIIGAKAIGSNKGFFYIRGEFQKGARTMQAAIDEAYSKGY 146 Query: 149 LGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N LG +D D+I++ GAGAYICGEETAL+ SLEG++G PRLKPPFPA GLY PT Sbjct: 147 LGKNI-LGTDFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPT 205 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVE+ + +P IL +GA WYS G E + GT+LFS+SGHV P E + EL+ Sbjct: 206 VVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKRPGVYEIELGTPLLELV 265 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 CGGI L A+IPGGSSVP L A + + A MD++ + + LG+ AVIV+ Sbjct: 266 NDLCGGIVDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEG 324 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 DI++ +R + FY HESCGQCTPCREGT W+ ++ ++ +G ++IDL+ +S+N+E Sbjct: 325 ADIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTQDIDLILSLSRNME 384 Query: 387 -GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G TIC L DA ++ I+ FR + R+ + Sbjct: 385 GGTTICPLSDACVGAVRPAIQKFRSEFDARLKE 417 >gi|269128608|ref|YP_003301978.1| NADH-quinone oxidoreductase subunit F [Thermomonospora curvata DSM 43183] gi|268313566|gb|ACY99940.1| NADH-quinone oxidoreductase, F subunit [Thermomonospora curvata DSM 43183] Length = 433 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/384 (51%), Positives = 255/384 (66%), Gaps = 5/384 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + + K L D I+ VK SGLRGRGGAGF TGMKW F+P S +P YLVVNADE Sbjct: 28 GGYQAMRKALRMEPDAIVQAVKDSGLRGRGGAGFPTGMKWGFLPP-NSPKPRYLVVNADE 86 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGTCKD +M PH L+EG +I+++AI +H AFIYVRGE + LQ AV E Y + Sbjct: 87 SEPGTCKDIPLMMANPHVLVEGIIISAYAIRSHHAFIYVRGEVLHVIRRLQQAVAEAYQA 146 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G LG + GYD+D++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA GLYG P Sbjct: 147 GYLGKDILGTGYDLDVVVHTGAGAYICGEETALLDSLEGYRGQPRLKPPFPAVAGLYGGP 206 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NNVESI+ VP+I+ G W++ G E ++G +FS+SGHV P E + IT EL Sbjct: 207 TVINNVESISSVPSIVANGPDWFASMGTEKSKGFGIFSLSGHVTRPGQYEAPLGITLREL 266 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 +E GG+R G D L PGGSS P M +D++ + GS LGT A+ + D Sbjct: 267 LEM-AGGMRKGRD-LKFWTPGGSSTPLFTKEHMD-VPLDFESVGAAGSMLGTRALQIFDE 323 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +T +++A+ R S FY HESCG+CTPCREGT W +++ RL G + +++ L ++S NI Sbjct: 324 TTCVVRAVLRWSEFYAHESCGKCTPCREGTYWYKQMLRRLENGQGTEEDLETLLDLSDNI 383 Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409 GR+ CALGD A P+ IK FR Sbjct: 384 LGRSFCALGDGATSPVTSSIKLFR 407 >gi|153007185|ref|YP_001381510.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter sp. Fw109-5] gi|152030758|gb|ABS28526.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. Fw109-5] Length = 441 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/408 (50%), Positives = 275/408 (67%), Gaps = 7/408 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L + G + +DK L I++EVK S LRGRGGAGF+TG+KW+F+PK RP Sbjct: 18 ALRTYRADGGYAALDKALGMEPAAIVDEVKRSNLRGRGGAGFATGLKWTFLPK--DIRPR 75 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL VNADESEPGT KDR I+ H+PH LIEG I +A+ H A++Y+RGEF R+ L+A Sbjct: 76 YLTVNADESEPGTFKDRYIIEHDPHMLIEGIAITCYALDIHLAYVYIRGEFARQARILEA 135 Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E A+G+LG K +D+D+ VH GAGAYICGEE+ALLESLEGKKG PRLKPPFP Sbjct: 136 AIEEARAAGILGQRLLGKKDFDLDVFVHRGAGAYICGEESALLESLEGKKGYPRLKPPFP 195 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NNVE+IA VP I+ G ++G G + GT+LF +SGHVN P E+ Sbjct: 196 AVVGLWGKPTIINNVETIANVPWIVANGGDAFAGLGVGKSGGTRLFGVSGHVNRPGVFEK 255 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +LI + CGGI GG + AVIPGGSS P L ++ + +++D +K GS G Sbjct: 256 PVDYNLKKLIMEDCGGIPGG-RKVKAVIPGGSSSPVLRGDEIDIS-LEFDAVKAAGSMSG 313 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + VIV D ST +++A+ R+S FY ESCGQCTPCREGT WM ++E++ G ++ Sbjct: 314 SGGVIVFDDSTCMVRALARISKFYAEESCGQCTPCREGTSWMEGIVEKIEHGHGTAADVA 373 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 L +++ NI G+TICALGDAA+ P+Q +K FR +++ RC F Sbjct: 374 KLEQIAGNIGGQTICALGDAASMPVQSFVKKFRDEFLRHVEE-RRCPF 420 >gi|295798105|emb|CAX68924.1| NADH-quinone oxidoreductase F subunit (51 kDa) [uncultured bacterium] Length = 423 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/401 (47%), Positives = 267/401 (66%), Gaps = 5/401 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIIN-EVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 LS + G + + K+L++ + + EVKAS LRG GGAGFSTG KWSF+P+ + +P Sbjct: 17 LSGFLREGGYKSAAKVLKEMKPADVEAEVKASNLRGLGGAGFSTGTKWSFVPR-NTGKPI 75 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADE EPGT KD+ I+ PH LIEG +IAS+A+G H AFIY+RGE+ ++ ++++ Sbjct: 76 YLVVNADEGEPGTFKDKYIIERVPHLLIEGIIIASYAVGIHKAFIYIRGEYEKQYQAIKE 135 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E Y LG+ + + +DI++H GAGAYICGEET+LLESLEGKKG PRLKPPFPA Sbjct: 136 ALREAYDHKFLGTQIFGMDFQLDIVLHRGAGAYICGEETSLLESLEGKKGYPRLKPPFPA 195 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+GCPT +NNVE+++ +P+I+ +GASW++ G E + G +LF +SGHV P E Sbjct: 196 IVGLFGCPTVINNVETLSYLPSIIEKGASWFAAMGTEKSGGMRLFGVSGHVVKPGVYELP 255 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + T E+I H GGI G L AV+PGG S + ++ + MD+D LK G+ G+ Sbjct: 256 IKTTLREIIYHHAGGIPNG-KKLKAVVPGGLSAAIMTPDEIDVS-MDFDALKAKGTMGGS 313 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +IVMD + +++A+ FY HESCGQC+PCREGTGW+ R++ R+V G + ++ID Sbjct: 314 GGIIVMDETVSMVEALRITMQFYAHESCGQCSPCREGTGWIYRILNRIVAGKGKLQDIDN 373 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++ + G TICAL D A +K FR EE I Sbjct: 374 LLDIGAYLGGTTICALADGAQMTFLSYLKKFRSEFEEFIQN 414 >gi|119714789|ref|YP_921754.1| NADH-quinone oxidoreductase, F subunit [Nocardioides sp. JS614] gi|119535450|gb|ABL80067.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614] Length = 440 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 209/407 (51%), Positives = 271/407 (66%), Gaps = 14/407 (3%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 DQ+R +T L+ SRG + VD D +I+ VK SGLRGRGGAGF TG Sbjct: 18 DQERSWT---------LAAYESRGGYRAVDTAFAMEPDAVIDAVKESGLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F+P+ + RP YLVVNADESEPGTCKD +M PHTL+EG +I+S+AI A+ AFI Sbjct: 69 MKWGFIPQ-DNPRPKYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRANKAFI 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE + +Q AV E YA+G LG+N G+D+D++VH GAGAYICGEETALLE L Sbjct: 128 YIRGEVLHVIRRVQRAVQEAYAAGHLGTNIHGSGFDLDVVVHAGAGAYICGEETALLEGL 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++GQPRL+PPFPA GLY PT +NNVESI+ VP+I+ RG +W++ G E ++G +F Sbjct: 188 EGRRGQPRLRPPFPAVAGLYASPTVINNVESISSVPSIIGRGHAWFASMGTEKSKGVGIF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SGHV P E + IT LI+ GGIR G L PGGSS P L A + Sbjct: 248 SLSGHVKRPGQYEAPLGITLRTLIDL-AGGIREG-HELKFWTPGGSSTPLLTAEHLD-VP 304 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D++G+ GS LGT A+ + D S +++A+ R S FYKHESCG+CTPCREGT W+++V+ Sbjct: 305 LDFEGVGSAGSMLGTRALQIFDDSVCVVRAVLRWSEFYKHESCGKCTPCREGTWWLVQVL 364 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L KG + ++DLL + NI GR+ CAL D A PI I+ FR Sbjct: 365 TALEKGDGTEEDLDLLLDQCDNILGRSFCALADGATSPIVSSIQFFR 411 >gi|302523882|ref|ZP_07276224.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4] gi|302432777|gb|EFL04593.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4] Length = 427 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/377 (53%), Positives = 254/377 (67%), Gaps = 5/377 (1%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K L + ++ VK SGLRGRGGAGF G+KWSFMP D+PHYLV+NADE EPGTCK Sbjct: 35 KALAATPEQLVQVVKDSGLRGRGGAGFPAGVKWSFMPP-NEDKPHYLVINADEGEPGTCK 93 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152 D +M +PH+LIEGC+IAS+A+ +H FIYVRGE + L AA E YA G LG N Sbjct: 94 DIPLMMADPHSLIEGCIIASYAMRSHHCFIYVRGEALHCIRRLNAAAREAYAKGYLGKNI 153 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G+D+++ VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY PTTVNNVE Sbjct: 154 FGSGWDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAAAGLYAAPTTVNNVE 213 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 +IA I+ G+SW+ GRE + G K++SISGHV P E + T EL+E GG Sbjct: 214 TIASASYIINAGSSWFREMGREKSPGPKIYSISGHVEKPGQYECPLGTTLRELLEL-AGG 272 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 ++ G L PGGSS P A + +D++G E GS LGT AV V + + + A Sbjct: 273 MKDGIP-LKFWTPGGSSTPMFTAEHLD-VPLDFEGAAEAGSMLGTTAVQVFNETVSVPWA 330 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + + + FY+HESCG+CTPCREGT W+ +++ER+V+G + +ID L +V NI GR+ CA Sbjct: 331 VMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEEDIDTLLDVCDNIFGRSFCA 390 Query: 393 LGDAAAWPIQGLIKNFR 409 LGD A PIQ IK FR Sbjct: 391 LGDGAVSPIQSGIKYFR 407 >gi|28198176|ref|NP_778490.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa Temecula1] gi|182680810|ref|YP_001828970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23] gi|28056246|gb|AAO28139.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa Temecula1] gi|182630920|gb|ACB91696.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23] gi|307579278|gb|ADN63247.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa subsp. fastidiosa GB514] Length = 444 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/405 (51%), Positives = 269/405 (66%), Gaps = 8/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF TG+K Sbjct: 21 IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Y+ Sbjct: 81 WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138 Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 RGEF E E + A+ + Y G LG + G D+DI GAGAYICGEETAL+ESLE Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKSVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K+FS Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V E + TFDEL+E GG+R G L A IPGG S+P L A Q++G M Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLQGLQM 316 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM RV+E Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421 >gi|269794078|ref|YP_003313533.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542] gi|269096263|gb|ACZ20699.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542] Length = 449 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/396 (50%), Positives = 255/396 (64%), Gaps = 5/396 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L ++ G ++ + L + ++ VK SGLRGRGGAGF TGMKW F+P P Sbjct: 20 TLETYLANGGYEGLRAALAQPAADVVQTVKDSGLRGRGGAGFPTGMKWGFLP-APDGGPR 78 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD +M P TL+EG I S+AIG H AFIYVRGE + L Sbjct: 79 YLVVNADESEPGTCKDIPLMLASPQTLVEGVAITSYAIGCHHAFIYVRGEVLHVYRRLLK 138 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV+E YA+G LG + G+D+D+ VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA Sbjct: 139 AVEEAYAAGYLGKDVLGSGFDLDVTVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPA 198 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT VNNVES+A VP I+ RGASW++ G E + G LFS+SGHV +P E Sbjct: 199 VAGLYARPTVVNNVESVASVPQIVARGASWFTSMGTERSAGHGLFSLSGHVTHPGQYEAP 258 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + IT EL++ GG+RGG L PGGSS P A + +DY+ + GS LGT Sbjct: 259 LGITLRELLDM-AGGVRGG-RALKFWTPGGSSTPIFTAEHLD-VPLDYESVAAAGSMLGT 315 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL G + +ID Sbjct: 316 RALQIFDETTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRLEAGQGTQGDIDT 375 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 L + NI GR CALGD A I ++ FR E Sbjct: 376 LLDTCDNILGRAFCALGDGATSCITSAVQYFREEFE 411 >gi|126434143|ref|YP_001069834.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS] gi|126233943|gb|ABN97343.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS] Length = 438 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/395 (51%), Positives = 266/395 (67%), Gaps = 7/395 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75 +L G + +++ L D +I +K SGLRGRGGAGF TG KWSF+P+ + Sbjct: 19 TLETYRRHGGYRALEQALATAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEGPAA 78 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLV+NADESEPGTCKD ++ PH L+EG +IA++AI AH AFIYVRGE + Sbjct: 79 KPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPVLRR 138 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQAAV E Y +G LG++ + G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 139 LQAAVAEAYDAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 198 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 199 FPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 258 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL+E + GG+R G L PGGSS P L G+ +DY+G+ +GS Sbjct: 259 EAPLGITLRELLE-YAGGVRAG-HELKFWTPGGSSTPLL-TGEHLDVPLDYEGMASVGSM 315 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ RL G A + + Sbjct: 316 LGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGDATEAD 375 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L ++S I G++ CALGD AA PI IK FR Sbjct: 376 VDKLLDISDTILGKSFCALGDGAASPIISSIKYFR 410 >gi|256396787|ref|YP_003118351.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila DSM 44928] gi|256363013|gb|ACU76510.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila DSM 44928] Length = 441 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/409 (49%), Positives = 264/409 (64%), Gaps = 10/409 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L+ R + V + L D +I VK SGLRGRGGAGF TGMKW F+P+ +PH Sbjct: 20 TLAGYQRRDGYTAVKQALRMHPDEVIQLVKDSGLRGRGGAGFPTGMKWGFIPQ-NDGKPH 78 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD M PH L+EG +IA +AI A AFIYVRGE + LQA Sbjct: 79 YLVVNADESEPGTCKDIPFMMANPHELVEGVIIACYAIRASHAFIYVRGEVLHVLRRLQA 138 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E Y +G LG +D+++ VH GAGAYICGEETALL+SLEGK+GQPRL+PPFPA Sbjct: 139 AVREAYDAGFLGKGVFGTDFDLELTVHAGAGAYICGEETALLDSLEGKRGQPRLRPPFPA 198 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT VNNVESI VP I+R G W+ G G E + G L+S+SGHV +P E Sbjct: 199 VAGLYASPTCVNNVESIGSVPAIVRNGVDWFKGMGSEKSPGFTLYSLSGHVKHPGQYEAP 258 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + IT EL++ + GG+R G L PGGSS P + +DY+G+ GS LGT Sbjct: 259 LGITLRELLD-YAGGVRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGT 315 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ + D +T +++A R + FY HESCG+CTPCREGT W++++++R+ KG + ++ Sbjct: 316 KALQIFDETTCVVRAALRWTEFYAHESCGKCTPCREGTYWLVQILKRMEKGEGTEDDLGK 375 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR--CNF 424 L ++ NI G+ CALGD AA PIQ +K FR +E ++ + R C F Sbjct: 376 LLDLCDNIVGKAFCALGDGAAAPIQSSLKYFR---DEYLEHFERGGCPF 421 >gi|108798545|ref|YP_638742.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS] gi|119867645|ref|YP_937597.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS] gi|108768964|gb|ABG07686.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS] gi|119693734|gb|ABL90807.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS] Length = 438 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/395 (51%), Positives = 266/395 (67%), Gaps = 7/395 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75 +L G + +++ L D +I +K SGLRGRGGAGF TG KWSF+P+ + Sbjct: 19 TLETYRRHGGYRALEQALGTAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEGPAA 78 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLV+NADESEPGTCKD ++ PH L+EG +IA++AI AH AFIYVRGE + Sbjct: 79 KPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPVLRR 138 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQAAV E Y +G LG++ + G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 139 LQAAVAEAYEAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 198 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 199 FPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 258 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL+E + GG+R G L PGGSS P L G+ +DY+G+ +GS Sbjct: 259 EAPLGITLRELLE-YAGGVRAG-HELKFWTPGGSSTPLL-TGEHLDVPLDYEGMASVGSM 315 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ RL G A + + Sbjct: 316 LGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGEATEAD 375 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L ++S I G++ CALGD AA PI IK FR Sbjct: 376 VDKLLDISDTILGKSFCALGDGAASPIISSIKYFR 410 >gi|240276236|gb|EER39748.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Ajellomyces capsulatus H143] Length = 282 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/254 (69%), Positives = 211/254 (83%) Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W Sbjct: 2 GAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKW 61 Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 ++ FGRE N+GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGG Sbjct: 62 FASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGG 121 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 SS P LP +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQ Sbjct: 122 SSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQ 181 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCREG+ W M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++ Sbjct: 182 CTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRH 241 Query: 408 FRPLIEERIDQYHR 421 FRP +E RI +Y + Sbjct: 242 FRPELEARIRKYEQ 255 >gi|145589229|ref|YP_001155826.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047635|gb|ABP34262.1| NADH dehydrogenase subunit F [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 432 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/403 (52%), Positives = 269/403 (66%), Gaps = 10/403 (2%) Query: 12 LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G + L D SRG + + ++ D II E+KAS LRGRGGAGF TG+KWS Sbjct: 14 LAGLNGDNWRLKDYESRGGYQQLRHLINDKVAPDAIIAELKASSLRGRGGAGFPTGLKWS 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G + Y+ G Sbjct: 74 FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITTGYNYIHG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGK 185 E + A++E A+G LG + LG + +H G GAYICGEETALLESLEGK Sbjct: 133 EIWEVYSRFEEALEEARAAGYLG-DKILGSEFSFQLHASPGWGAYICGEETALLESLEGK 191 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL G Y G+ NN GTK+FSIS Sbjct: 192 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLELGKPNNGGTKIFSIS 251 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +P E + F EL+ K GG+R G L AVIPGGSS P +P QM MDY Sbjct: 252 GDVVHPGNYEIPLGTPFAELL-KLAGGMRDGIP-LKAVIPGGSSSPVVPGAQMMELTMDY 309 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVIVM+ + +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 310 DSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHRI 369 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G + ++DLL +V+ NI+GRTICALGDAAA P++G++K++ Sbjct: 370 EHGQGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHY 412 >gi|239929609|ref|ZP_04686562.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291437933|ref|ZP_06577323.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291340828|gb|EFE67784.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 448 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/414 (49%), Positives = 267/414 (64%), Gaps = 14/414 (3%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+DR +T L G ++ + K L D +I VK SGLRGRGGAGF TG Sbjct: 25 DEDRSWT---------LDVYRRHGGYEGLRKALAMSPDDVIAYVKDSGLRGRGGAGFPTG 75 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F+P+ +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFI Sbjct: 76 MKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFI 134 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE + L AAV E YA+GLLG N G D+++ VH GAGAYICGEETALL+SL Sbjct: 135 YLRGEVVPVLRRLHAAVREAYAAGLLGENVLGSGLDLELTVHAGAGAYICGEETALLDSL 194 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++GQPRL+PPFPA GLY CPT VNNVESIA VP+IL RG W+ G E + G L+ Sbjct: 195 EGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPSILHRGKEWFRSMGSEKSPGFTLY 254 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SGHV P E + IT +L+E GG+R G L PGGSS P + Sbjct: 255 SLSGHVANPGQYEAPLGITLRQLLEM-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVP 311 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DY+G+ GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ Sbjct: 312 LDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLL 371 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + G + ++D L +++ NI G++ CALGD AA PI +K FR E+ I Sbjct: 372 RDIEAGKGRMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHI 425 >gi|149280565|ref|ZP_01886681.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39] gi|149228680|gb|EDM34083.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39] Length = 453 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 206/409 (50%), Positives = 263/409 (64%), Gaps = 20/409 (4%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ K P YLV NA Sbjct: 24 KGGYRAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNA 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + + L+ A+ E Sbjct: 83 DESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILERAIAEAK 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +G LG N GYD+++ V G GAYICGEETALLESLEGK+G PR+KPPFPA GLYG Sbjct: 143 QAGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLYG 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 CPT VNNVESIA I+ G Y+ G + GTKL S SG++ P E + + + Sbjct: 203 CPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNLVRPGVYEIELGLPVE 262 Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310 E I +++CGGI G L A + GGSSVP LPA G R +M Y+ L E Sbjct: 263 EFIYSDEYCGGIANG-KRLKATVAGGSSVPVLPANLTLKLANGDPR--LMSYESLSEGGF 319 Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 G+ +G+ I D I++ W + FY HESCGQC+PCREGTGWM +V+ R+ G Sbjct: 320 ATGTMMGSGGFIAFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTGWMEKVLHRIEYGH 379 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +IDLL +VSKNIEG TIC LGDAAAWP+ I++FR E + + Sbjct: 380 GKMSDIDLLVDVSKNIEGNTICPLGDAAAWPVASAIRHFRDEFEWHVKE 428 >gi|225871980|ref|YP_002753434.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC 51196] gi|225792115|gb|ACO32205.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC 51196] Length = 437 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/390 (51%), Positives = 260/390 (66%), Gaps = 4/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + +V K LE D IINE+K SGLRGRGGAGF TGMKWSF+PK S +P Y++VN DESE Sbjct: 34 YSSVRKCLEMEPDAIINEMKTSGLRGRGGAGFPTGMKWSFVPKQ-SAKPKYVLVNGDESE 92 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKDR I H+PH++IEG +IA AIGA FIY+RGE+ + ++ AV YA G Sbjct: 93 PGTCKDRLIFEHDPHSVIEGTMIAGLAIGAKMGFIYLRGEYRYLIQIMEKAVAAAYAKGF 152 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG +D D++V GAGAY GEE+AL+ESLEGK+G PR+KPPFPA VGLYG PT Sbjct: 153 LGKGIFGSQHDFDVVVQTGAGAYEVGEESALMESLEGKRGVPRIKPPFPAVVGLYGGPTV 212 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 +NN E++A VP I R GA+ Y+ +G E N GT+LF ISGHV P E M ++I Sbjct: 213 INNAETLASVPHIFRIGAAEYAKYGTERNGGTRLFCISGHVEKPGVYELPMGYNLKKMIY 272 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + GGI GG L AV+PGGSSVP L ++ MD+D + + GS LG+ V+V+D S Sbjct: 273 EVAGGILGG-KKLKAVVPGGSSVPVLLPDEIDIG-MDFDQVAKAGSMLGSGGVVVLDESV 330 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++ R FY+HESCG C PCREGT W+ + + RL G A ++I+ + +++N+ G Sbjct: 331 CMVEFALRTIKFYRHESCGWCIPCREGTDWLQKSITRLHMGGAVDKDINNIQYIAENMLG 390 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 RT C LGDAAA P G +K FR E+ ++ Sbjct: 391 RTFCPLGDAAAMPTIGFVKKFRKEFEDHLN 420 >gi|255533958|ref|YP_003094330.1| NADH-quinone oxidoreductase subunit F [Pedobacter heparinus DSM 2366] gi|255346942|gb|ACU06268.1| NADH-quinone oxidoreductase, F subunit [Pedobacter heparinus DSM 2366] Length = 454 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/413 (50%), Positives = 265/413 (64%), Gaps = 20/413 (4%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ K P YLV NA Sbjct: 24 KGGYRAVEKALKTLTPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAKP-DGVPRYLVCNA 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + + L+ A+ E Sbjct: 83 DESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILEKAIAEAK 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +G LG N GYD+++ V G GAYICGEETALLESLEGK+G PR+KPPFPA GLYG Sbjct: 143 NAGFLGKNILGSGYDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLYG 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 CPT VNNVESIA V I+ G Y+ G + GTKL S SG++ P E + + + Sbjct: 203 CPTVVNNVESIAAVVPIVNDGGEEYAKIGIGRSTGTKLISASGNLVRPGVYEIELGLPVE 262 Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310 E I ++ CGGI G L A + GGSSVP LPA G+ R +M Y+ L E Sbjct: 263 EFIYSDEWCGGIANG-KRLKATVAGGSSVPVLPANLTLKLANGEPR--LMSYESLSEGGF 319 Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 G+ +G+ I D I++ W S FY HESCGQC+PCREGTGWM +V+ RL G Sbjct: 320 ATGTMMGSGGFIAFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLHRLEYGH 379 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +IDLL +VSK IEG TIC LGDAAAWP+ I++FR E + + +C Sbjct: 380 GKMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHVKEPVKC 432 >gi|183220691|ref|YP_001838687.1| NADH-quinone oxidoreductase subunit F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910792|ref|YP_001962347.1| NADH dehydrogenase subunit F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775468|gb|ABZ93769.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779113|gb|ABZ97411.1| NADH-quinone oxidoreductase, chain F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 423 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/414 (46%), Positives = 266/414 (64%), Gaps = 6/414 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T++ +L S G ++++ K L E + I+N+VK SGLRGRGGAGF TG KW Sbjct: 7 LTTHIDASDSHTLKHYQSVGGYESLKKALSEMTAEQIVNDVKNSGLRGRGGAGFPTGNKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+PK +D+P YL+ N DE EPGT KDR ++ PH LIEG IA+ AI +H +IY+R Sbjct: 67 GFIPK--TDKPKYLICNGDEGEPGTFKDRMLIERFPHMLIEGMAIAAKAIDSHQGYIYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + ++ AV+E Y +GLLG N LGYD D+ V+ GAGAYICGEE+AL+ SLEG+ Sbjct: 125 GEFHKGIRIVETAVEEAYKAGLLGKNIFGLGYDFDLAVYSGAGAYICGEESALINSLEGR 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PRLKPPFPA GLY CPT VNNVE+ VP I+R Y G E + GT+LF++S Sbjct: 185 RGHPRLKPPFPAVSGLYACPTVVNNVETFCNVPHIIRMTGEEYKKIGTEKSPGTRLFAVS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M ELI CGGI+ D L AVIPGGSS P L + A MDY Sbjct: 245 GHVKKPGIYEVEMGTPMKELIFDICGGIKNDKD-LKAVIPGGSSSPILTKDEAMTATMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + + S LG+ AVI++ D+++ +RL+ FY HESCGQCTPCREGT W+ ++ ++ Sbjct: 304 ESIASLKSMLGSGAVIILSEEADLVETTYRLAEFYSHESCGQCTPCREGTHWVKDLLHKI 363 Query: 366 VKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 KG +++++L++ +S+N+E G TIC L DA ++ + F+ R+ + Sbjct: 364 KKGEGTEKDVELIFSLSRNMEGGTTICPLADACVMAVRPTMTKFKEEFSLRLKK 417 >gi|66219967|gb|AAY43000.1| Nqo1 [Rhodothermus marinus] Length = 443 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/399 (49%), Positives = 263/399 (65%), Gaps = 12/399 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++L + ++ WD +I EVK S LRGRGGAGF TG+KWSFMP V DRP Sbjct: 40 QTLREVLTSDRWDPKS---------VIEEVKKSKLRGRGGAGFPTGLKWSFMPPV-DDRP 89 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +L N DESEPGT KDR +M PH + EG +IA +A+ ++YVRGEF R E ++ Sbjct: 90 RFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFARWIEHME 149 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 +++ YA G +G N + DI++H GAGAYICGEE++L+ES+EGK+ PR+KPPFP Sbjct: 150 RELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPRIKPPFP 209 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PTT+NNVE++A VP ILR G W++ G N+ G L+ ISGHVN P E Sbjct: 210 AQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNRPGVYEY 269 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +LI + GGIRGG L AVIPGGSS P L A + G MD + L+E GS +G Sbjct: 270 PTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLREAGSMMG 328 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 TA ++V+D TD++ + R++ FY HESCGQCTPCREGTGW+ ++ R+ +G + R++D Sbjct: 329 TAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIEEGEGRLRDLD 388 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 LL ++ +EGRT+CAL DAAAWP++ I FR E R Sbjct: 389 LLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427 >gi|240169665|ref|ZP_04748324.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium kansasii ATCC 12478] Length = 443 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/380 (53%), Positives = 259/380 (68%), Gaps = 7/380 (1%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP---KVCSDRPHYLVVNADESEPG 90 K L D +I VK SGLRGRGGAGF+TG KWSF+P K + +PHYLVVNADESEPG Sbjct: 39 KALSMDPDAVIGTVKDSGLRGRGGAGFATGTKWSFIPQGDKGAAAKPHYLVVNADESEPG 98 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TCKD +M PH L+EG +IA++AI AH AFIYVRGE + LQ AV E YA+G LG Sbjct: 99 TCKDIPLMLATPHVLVEGIIIAAYAIRAHHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLG 158 Query: 151 SN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 N + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLYGCPT +N Sbjct: 159 RNIAGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVIN 218 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE+IA VP I+ G W+ G E + G L+S+SGHV P E + IT EL++ + Sbjct: 219 NVETIASVPAIILHGVDWFRSMGTEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-Y 277 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 GG+R G L PGGSS P L + +DY+G+ +GS LGT A+ + D +T + Sbjct: 278 AGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAVGSMLGTKALEIFDETTCV 335 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 ++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G +ID L ++S +I G+ Sbjct: 336 VRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGTHEDIDKLLDISDSILGKA 395 Query: 390 ICALGDAAAWPIQGLIKNFR 409 CALGD AA P+ I FR Sbjct: 396 FCALGDGAASPVMSSINYFR 415 >gi|325105662|ref|YP_004275316.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145] gi|324974510|gb|ADY53494.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145] Length = 454 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/408 (49%), Positives = 265/408 (64%), Gaps = 18/408 (4%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ K P YLV N Sbjct: 24 KGGYRAVEKALKTMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNG 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + + L+ A+ E Sbjct: 83 DESEPGTFKDRFLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILEKAIAEAK 142 Query: 145 ASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 +G LG N LG +D+++ V G GAYICGEETALLESLEGK+G PR+KPPFPA GLY Sbjct: 143 EAGYLGKNI-LGSDFDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLY 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 CPT VNNVESIA I+ G Y+ G + GTKL S SG++N P E + ++ Sbjct: 202 NCPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNINKPGVYEIELGVSV 261 Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE---- 310 ++ I +++CGGI G L AV+ GGSSVP LPA + + M Y+ L + Sbjct: 262 EDFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLILNLVNGDKRLMTYESLSDGGFA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ LG+ IVMD +++ W S FY HESCGQC+PCREGTGWM +++ ++ G Sbjct: 321 TGTMLGSGGFIVMDEDQCVVRNTWNFSRFYNHESCGQCSPCREGTGWMTKILHKIETGKG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +IDLL +VSK IEG TIC LGDAAAWP+ +++FR E I++ Sbjct: 381 SYSDIDLLVDVSKQIEGNTICPLGDAAAWPVASAVRHFRDEFEWHINE 428 >gi|268317708|ref|YP_003291427.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM 4252] gi|262335242|gb|ACY49039.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM 4252] Length = 443 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/399 (49%), Positives = 263/399 (65%), Gaps = 12/399 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++L + ++ WD +I EVK S LRGRGGAGF TG+KWSFMP V DRP Sbjct: 40 QTLREVLTSDRWDPKS---------VIEEVKKSKLRGRGGAGFPTGLKWSFMPPV-DDRP 89 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +L N DESEPGT KDR +M PH + EG +IA +A+ ++YVRGEF R E ++ Sbjct: 90 RFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFARWIEHME 149 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 +++ YA G +G N + DI++H GAGAYICGEE++L+ES+EGK+ PR+KPPFP Sbjct: 150 RELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPRIKPPFP 209 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PTT+NNVE++A VP ILR G W++ G N+ G L+ ISGHVN P E Sbjct: 210 AQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNRPGVYEY 269 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +LI + GGIRGG L AVIPGGSS P L A + G MD + L+E GS +G Sbjct: 270 PTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLREAGSMMG 328 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 TA ++V+D TD++ + R++ FY HESCGQCTPCREGTGW+ ++ R+ +G + R++D Sbjct: 329 TAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIDEGEGRLRDLD 388 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 LL ++ +EGRT+CAL DAAAWP++ I FR E R Sbjct: 389 LLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427 >gi|255535800|ref|YP_003096171.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium 3519-10] gi|255341996|gb|ACU08109.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium 3519-10] Length = 467 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/423 (50%), Positives = 275/423 (65%), Gaps = 16/423 (3%) Query: 15 LQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 ++G D R G +D VDK L+ D I+ EVK SGLRGRGGAGF TGMKWSF+ K Sbjct: 28 IEGIRFYDVYRRQGGYDAVDKALKMTPDVIVEEVKTSGLRGRGGAGFPTGMKWSFLAKP- 86 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 P YLVVNADESEPGT KDR +M PH LIEG +I+S+A+GA+ A+IY+RGE+ Sbjct: 87 EGVPRYLVVNADESEPGTFKDRYLMEFLPHLLIEGMIISSYALGANTAYIYIRGEYSWIP 146 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + L+ A++E A+G LG N GYD++I VH GAGAYICGEETALLESLEGK+G PRLK Sbjct: 147 DILEQAINEAKAAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESLEGKRGNPRLK 206 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GL+ PT VNNVE+IA V I+ G + Y+ G + GTKL S G++N P Sbjct: 207 PPFPAVKGLWESPTVVNNVETIAAVVPIMNIGGAEYAKIGVGRSTGTKLISACGNINKPG 266 Query: 253 TVEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MD 304 E M+IT +E I +++CGGI G L A IPGGSSVP +PA + I M+ Sbjct: 267 VYEIDMTITVEEFIYSDEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTINGEPRYMN 325 Query: 305 YDGLKE----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 Y+ L + G+ +G+ IV+D ++K L+ FY HESCGQCTPCREGT WM R Sbjct: 326 YESLADGGFATGTMMGSGGFIVLDEDQCVVKHTMSLAHFYAHESCGQCTPCREGTPWMYR 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ + G +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E ID Sbjct: 386 ILKNIETGKGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHIDNPE 445 Query: 421 RCN 423 N Sbjct: 446 ALN 448 >gi|328884317|emb|CCA57556.1| NADH-ubiquinone oxidoreductase chain F [Streptomyces venezuelae ATCC 10712] Length = 449 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/389 (50%), Positives = 255/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 41 YQGLRKALAMSPDALIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 99 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG +IA +AI + AFIY+RGE + L AV E YA+G Sbjct: 100 PGTCKDIPLLYANPHSLIEGMIIACYAIRSEHAFIYLRGEVVPVLRRLHEAVREAYAAGY 159 Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G +VDI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 160 LGRNVLGSGLNVDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 219 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W++ G E + G L+S+SGHV P E + IT +L++ Sbjct: 220 VNNVESIASVPAILNRGKEWFTSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 279 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 280 M-SGGMRAG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 336 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 337 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRSIENGTGTLADLDKLNDIADNING 396 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 397 KSFCALGDGAASPIFSSLKYFREEYEQHI 425 >gi|256831784|ref|YP_003160511.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM 20603] gi|256685315|gb|ACV08208.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM 20603] Length = 448 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/399 (51%), Positives = 253/399 (63%), Gaps = 5/399 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q ++ + G ++ + K L I+ EVK SGLRGRGGAGF TGMKW F+P Sbjct: 18 QSWTMDTYLDHGGYEGLKKALTMDPAAIVQEVKDSGLRGRGGAGFPTGMKWGFLPP-DDG 76 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YLVVNADESEPGTCKD +M P LIEG +I SFAIG AFIYVRGE + Sbjct: 77 GPRYLVVNADESEPGTCKDIPLMMATPQFLIEGVIITSFAIGCRHAFIYVRGEVVHVYRR 136 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV+E Y G LG N GY +D+ VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 137 LLKAVEEAYDRGFLGDNILGSGYSLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 196 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVES+A VP I+ RGASW++ G E + G LFS+SGHV P Sbjct: 197 FPAVAGLYARPTVVNNVESVASVPQIIARGASWFTSLGTEKSAGHGLFSLSGHVERPGQY 256 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL++ GGIRGG L PGGSS P A + +DY+ + GS Sbjct: 257 EAPLGITLRELLDM-AGGIRGG-RQLKFWTPGGSSTPIFTADHLD-TPLDYESVGAAGSM 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ R+ G + + Sbjct: 314 LGTRALQIFDDTTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRIEAGQGTQGD 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I+ L ++ NI GR CALGD A I I+ FR E Sbjct: 374 IEKLLDLCDNILGRAFCALGDGATSCITSAIQYFRDEFE 412 >gi|116619257|ref|YP_821413.1| NADH-quinone oxidoreductase subunit F [Candidatus Solibacter usitatus Ellin6076] gi|116222419|gb|ABJ81128.1| NADH-quinone oxidoreductase, F subunit [Candidatus Solibacter usitatus Ellin6076] Length = 437 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/414 (45%), Positives = 264/414 (63%), Gaps = 4/414 (0%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + R+ T +G ++ ++ + K + + II EVK S LRGRGGAGF TG Sbjct: 10 ETRVLTRRFGKPNSAAIEGYLADDGYQGFLKAAKMKPEEIIEEVKVSNLRGRGGAGFPTG 69 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+P+ S +P Y+VVN DESEPGTCKDR ++ ++PH LIEG +IA ++ AH ++ Sbjct: 70 MKWSFVPRT-SPKPKYIVVNGDESEPGTCKDRVLIENDPHQLIEGVLIAGLSVDAHAGYV 128 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE+ + ++ A+ E YA G LG N + G+D D+ H GAGAY CGEE+ALLESL Sbjct: 129 YIRGEYRYLIDIMEKAIAEAYAKGWLGKNIQGTGFDFDLYAHTGAGAYECGEESALLESL 188 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR++PPFPA G + CPT +NNVE+ VP ILR G + ++ G GTK+ Sbjct: 189 EGKRGIPRIRPPFPAVAGAFQCPTILNNVETFCAVPAILRDGGAAFAALGIPKAGGTKMT 248 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ++GHVN P E + ++IE+ GG+R G L A IPGGSS P L A ++ GA Sbjct: 249 CLTGHVNKPGVYELKLGFPVKQMIEEVGGGMRNG-KKLKAFIPGGSSCPVLTAAELEGAT 307 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + S LG+ VI+MD T ++KA R+ FY HESCG C PCREGT W+ +++ Sbjct: 308 MDYDSMASRKSMLGSGGVIIMDEDTCMVKAALRIMRFYAHESCGWCIPCREGTTWLKKIL 367 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R G + +I+L+ +++KN+ GRT C LGDAAA P +++ FR E+ + Sbjct: 368 TRFHDGQGTRTDINLIGDIAKNMLGRTFCPLGDAAAMPTISIVEKFREEFEDHL 421 >gi|120402878|ref|YP_952707.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii PYR-1] gi|119955696|gb|ABM12701.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii PYR-1] Length = 441 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 212/414 (51%), Positives = 275/414 (66%), Gaps = 8/414 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72 Q SL G + +D+ L D +I VK SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 QPWSLDTYRRHGGYQALDRALAMTPDQVITTVKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + +PHYLV+NADESEPGTCKD +M PH L+EG +IA++AI AH AFIY+RGE + Sbjct: 76 PAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E YA+G LGS+ G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYAAGHLGSDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP +L G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPVLLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+E + GG+R G L PGGSS P L A + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAG-HELKFWTPGGSSTPLLTAEHLD-VPLDYEGMAGV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL G Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGAGT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR-CNF 424 + ++D L ++S NI G++ CALGD AA PI +K+FR E +D + C F Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRAEYEAHLDPVGKGCPF 426 >gi|297201628|ref|ZP_06919025.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] gi|297147935|gb|EDY55035.2| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] Length = 449 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/389 (51%), Positives = 257/389 (66%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 42 YEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG +IA +AI + AFIY+RGE + L +AV E YA+G Sbjct: 101 PGTCKDIPLLFANPHSLIEGMIIACYAIRSSHAFIYLRGEVVPVLRRLHSAVSEAYAAGY 160 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 161 LGQNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL+RG W+ G E + G L+S+SGHV P E + IT +L+E Sbjct: 221 VNNVESIASVPAILQRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLE 280 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 337 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 397 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEQHI 426 >gi|297565709|ref|YP_003684681.1| NADH-quinone oxidoreductase subunit F [Meiothermus silvanus DSM 9946] gi|296850158|gb|ADH63173.1| NADH-quinone oxidoreductase, F subunit [Meiothermus silvanus DSM 9946] Length = 444 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/403 (48%), Positives = 262/403 (65%), Gaps = 7/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L +S G ++ V K L + ++ EVK SGLRGRGGAGF TG+KWSFMPK S + H Sbjct: 34 TLEYYLSHGGYNAVKKALAMTPEQVVEEVKRSGLRGRGGAGFPTGLKWSFMPKP-SGKQH 92 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADESEPG+ KDR +M +PH LIEG +IA +AI A +IY+RGE+ R + L+ Sbjct: 93 YIVCNADESEPGSFKDRYLMEDDPHQLIEGMIIAGYAIHATKGYIYIRGEYRRAYDRLKG 152 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E YA G LG N G+ D+ VH GAGAYICGEETAL+ SLEG + PRLKPPFPA Sbjct: 153 AIQEAYARGYLGQNLFGTGFSFDLYVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPA 212 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PTT+NNVES+ I+ RGA W++ G E ++G KL+ +SG P E Sbjct: 213 QAGLWGKPTTINNVESLCSAVHIIDRGADWFASMGTEKSKGHKLYQVSGPFKRPGVYELP 272 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMDYDGLKEMGSGLG 316 M TF EL+ GG + + A+IPGGSS P LP MDY+ L GS LG Sbjct: 273 MGTTFRELLMDWAGGPT---EPIQAIIPGGSSCPPLPWNDDTLDTPMDYESLAAKGSLLG 329 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMMRVMERLVKGIAQKREI 375 T VI + S ++ A+W ++ FY HESCG+CTPCREG +GWM+ + E++ +G + ++ Sbjct: 330 TGGVIGIPASMSMVDAMWNVTRFYGHESCGKCTPCREGVSGWMVGLFEKIGRGQGKPGDV 389 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +LL ++ IEGR+ CAL DAA WP++G +K+FR E ++Q Sbjct: 390 ELLEDLLDQIEGRSFCALADAACWPVRGSLKHFRHQYVELVEQ 432 >gi|311897895|dbj|BAJ30303.1| putative NADH-quinone oxidoreductase subunit F [Kitasatospora setae KM-6054] Length = 453 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/407 (50%), Positives = 270/407 (66%), Gaps = 6/407 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L G +D + L D +I VK SGLRGRGGAGF TGMKW F+P+ +PH Sbjct: 27 TLDTYRRHGGYDGLAAALAMPPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQ-NDGKPH 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD ++ PH LIEG VIAS+AI AF+Y+RGE + LQA Sbjct: 86 YLVVNADESEPGTCKDIPLLFANPHALIEGMVIASYAIRCEHAFVYLRGEVVPVLRRLQA 145 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E YA+G LG + + G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA Sbjct: 146 AVAEAYAAGYLGKDIQGSGINLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY CPT VNNVESIA VP IL RG W++ G E + G L+S+SGHV P E Sbjct: 206 IAGLYACPTVVNNVESIASVPPILARGKDWFTSLGTEKSPGFTLYSLSGHVTNPGQYEAP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + IT +L+E GG+R G L PGGSS P + +DY+G+ GS LGT Sbjct: 266 LGITLRQLLEI-TGGVRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGT 322 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ V D +T +++A+ R + FY HESCG+CTPCREGT W++++++R+ G +++ Sbjct: 323 KALQVFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLKRIEAGQGAPGDLEK 382 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 L +++ NI G++ CALGD AA PI +++FR E+ +++ HRC F Sbjct: 383 LLDIADNINGKSFCALGDGAASPIVSSLQHFRAEYEQHLNE-HRCPF 428 >gi|237746746|ref|ZP_04577226.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS] gi|229378097|gb|EEO28188.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS] Length = 433 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/414 (50%), Positives = 284/414 (68%), Gaps = 9/414 (2%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 GL G+ +L+D +RG ++ + +IL I+ EV+ +GLRGRGGAGF T +KW FM Sbjct: 16 GLTGENWTLADYRARGGYEQIGRILGGHMPAGQIVAEVRTAGLRGRGGAGFPTAVKWGFM 75 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 PK + + YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G +IY+ GE Sbjct: 76 PKDHAGQT-YLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGYIYIHGEI 134 Query: 130 IRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 E A+ + +GL+G N G+D ++ HG GAYICGEETALLES+EGK+GQ Sbjct: 135 WTVYERFGEAIRQAREAGLIGKNIMDSGFDFELHAVHGYGAYICGEETALLESMEGKRGQ 194 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFPA GLYG PTT+NNVE++A VP I+ G Y+G GR+ GTK+FS+SG V Sbjct: 195 PRFKPPFPAANGLYGRPTTINNVETLAYVPFIMAMGGKAYAGLGRDGCSGTKVFSVSGDV 254 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + I F EL+E GG++GG + + AVIPGGSS P LPA M MDYD + Sbjct: 255 VCPGNYEVPLGIPFPELLEL-AGGVKGG-NKIRAVIPGGSSSPVLPAETMLALNMDYDSI 312 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + GS LGT VIV+D + ++K++ LS FY +ESCGQCTPCREGTGW+++++ER+ KG Sbjct: 313 AKAGSMLGTGGVIVLDETRCMVKSLLNLSRFYWNESCGQCTPCREGTGWLVKLIERIEKG 372 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + ++DLL V+ NI+GRTICALGDAAA P++ +++FR E I ++ RC Sbjct: 373 QGKPADLDLLDTVAANIQGRTICALGDAAAMPVRSFLRHFRQEFEYHI-EHKRC 425 >gi|24653819|ref|NP_725449.1| CG8102, isoform A [Drosophila melanogaster] gi|7303085|gb|AAF58152.1| CG8102, isoform A [Drosophila melanogaster] Length = 481 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/423 (45%), Positives = 259/423 (61%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ +V SGLRGRGGAGF Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 476 Query: 419 YHR 421 Y + Sbjct: 477 YAK 479 >gi|294630801|ref|ZP_06709361.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14] gi|292834134|gb|EFF92483.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14] Length = 456 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/389 (51%), Positives = 257/389 (66%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 48 YEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 106 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L +AV E YA+G Sbjct: 107 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHSAVREAYAAGY 166 Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 167 LGENVLGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 226 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL+ G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 227 VNNVESIASVPAILKNGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 286 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 287 M-SGGMRPG-HRLKFWTPGGSSTPMFTDEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 343 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 344 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRMTDLDKLNDIADNING 403 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR EE I Sbjct: 404 KSFCALGDGAASPIFSSLKYFRAEYEEHI 432 >gi|226355364|ref|YP_002785104.1| NADH dehydrogenase (quinone) subunit F [Deinococcus deserti VCD115] gi|226317354|gb|ACO45350.1| putative NADH dehydrogenase (quinone), subunit F (NADH-quinone oxidoreductase, subunit F) [Deinococcus deserti VCD115] Length = 446 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/410 (48%), Positives = 265/410 (64%), Gaps = 11/410 (2%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 R LY G+ +L+ G ++ V + E G D +I+EVK SGLRGRGGAGF+T Sbjct: 18 RFAPTLYAHVGQPDSWTLAYYRDNGGYEAVRRAFEMGPDAVIDEVKKSGLRGRGGAGFAT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP + R HY++ NADESEPG+ KDR ++ +PH LIEG +IA +A+ A + Sbjct: 78 GLKWSFMP-LNDGRKHYVICNADESEPGSFKDRYLLSEDPHQLIEGMLIAGYAMRATVGY 136 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE++ E + A+ E A+GLLG N G+D D+ VH GAGAYICGEETAL+ S Sbjct: 137 IYIRGEYVHAAERVWQAIHEARAAGLLGRNVLGSGFDFDLQVHRGAGAYICGEETALMNS 196 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG + PRLKPPFPA GLYG PTT+NNVE+ IL+ G+ W++G G E ++G KL Sbjct: 197 LEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATQILKFGSEWHAGMGTERSKGMKL 256 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRG 300 F ISG V P E + TF ELI GG + + A+IPGGSS P LP + ++ Sbjct: 257 FQISGPVARPGVYELPLGTTFRELIYDWAGGP---LEEMKAIIPGGSSCPMLPWSDRILD 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMM 359 MDY+ + GS LGT V ++ R+ I+ A W L FY HESCG+CTPCREG +GWM+ Sbjct: 314 TPMDYEAIAAAGSMLGTGGVTLIPRADCIVNATWNLVRFYAHESCGKCTPCREGISGWMV 373 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ E+LV+G Q ++ L+ ++S+NI GR+ CAL DA P+ I FR Sbjct: 374 KMYEKLVRGHGQPGDVQLILDMSENIGGRSFCALADACLGPVLSSISLFR 423 >gi|297563972|ref|YP_003682945.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848421|gb|ADH70439.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 439 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/410 (49%), Positives = 262/410 (63%), Gaps = 10/410 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L + G + + K L D I++ VK SGLRGRGGAGF TGMKW F+P + P Sbjct: 19 TLEGYRATGGYGALRKALAMEPDAIVDLVKKSGLRGRGGAGFPTGMKWGFLP-ADNPNPR 77 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD +M PH L+EG IA++AI + AFIYVRGE + L+ Sbjct: 78 YLVVNADESEPGTCKDIPLMLANPHVLVEGVAIAAYAIKSSQAFIYVRGEVLHVIRRLRR 137 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E Y +GLLG + G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA Sbjct: 138 AVAEAYEAGLLGRDVLGTGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPPFPA 197 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT VNNVESIA VP+I+ GA W++ G E + G FS+SGHV P E Sbjct: 198 VAGLYASPTVVNNVESIASVPSIVANGAEWFTSMGTEKSAGFGFFSLSGHVANPGQYEAP 257 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + +T EL++ GG+R G L PGGSS P + +D++ + GS LGT Sbjct: 258 LGVTLRELLDM-SGGMRPG-HRLKFWTPGGSSTPIFTEEHLD-TPLDFESVGAAGSMLGT 314 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ + D +T ++KA+ R FY HESCG+CTPCREG WM++V++RL G + ++D Sbjct: 315 RALQIFDETTCVVKAVGRWIAFYAHESCGKCTPCREGNFWMVQVLDRLENGQGTEADLDK 374 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR--CNFQ 425 L ++ N+ GR+ CALGD A P+ IK+FR +E ID R C F Sbjct: 375 LLDICDNLLGRSFCALGDGATSPVTSSIKHFR---QEYIDHVERGGCPFD 421 >gi|325003719|ref|ZP_08124831.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia sp. P1] Length = 454 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/388 (51%), Positives = 257/388 (66%), Gaps = 14/388 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMP------KVCSDRPHYLVVNADESEPGTCKD 94 D +I +K SGLRGRGGAGF TGMKW F+P K +P YLV+NADE EPGTCKD Sbjct: 44 DQLIQLIKDSGLRGRGGAGFPTGMKWGFIPQDDGSGKGPGAKPKYLVINADEGEPGTCKD 103 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 M +PH+LIEGC++ S+AI A+ IYVRGE + L+AAV E A G LG++ Sbjct: 104 IPTMMADPHSLIEGCIVTSYAIRANFCAIYVRGEALHCIRRLRAAVREAKARGYLGTDIL 163 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D++I+VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY CPT VNNVE+ Sbjct: 164 GSGFDLEIVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPATAGLYACPTVVNNVET 223 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 IA VP I+ G+ W+ GRE + G K++SISGHV P E + IT EL+E GG+ Sbjct: 224 IASVPAIVNGGSDWFRSMGREKSPGPKIYSISGHVERPGQYEAPLGITLRELLEL-AGGM 282 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 + G L PGGSS P L A + +D++G E GS LGT AV V + + + A+ Sbjct: 283 KDGV-PLKFWTPGGSSTPLLTADHLD-VPLDFEGAAEAGSMLGTTAVQVFNETVSVPWAV 340 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 + + FYKHESCG+CTPCREGT W+++V+ER+V G ++D++ +V NI GR+ CAL Sbjct: 341 MKWTEFYKHESCGKCTPCREGTYWLVQVLERMVHGQGTSADVDMMLDVCDNILGRSFCAL 400 Query: 394 GDAAAWPIQGLIKNFRP----LIEERID 417 GD A PI I FR LI E+ D Sbjct: 401 GDGATSPITSGITYFRQEFLDLIAEQPD 428 >gi|194882859|ref|XP_001975527.1| GG22361 [Drosophila erecta] gi|190658714|gb|EDV55927.1| GG22361 [Drosophila erecta] Length = 481 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/424 (45%), Positives = 258/424 (60%), Gaps = 6/424 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W +LE+G +W++ E+ GLRGRGGAGF Sbjct: 58 LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWMMKEISKCGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P L+VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMLIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178 A +Y+R F E +L A+ E Y GLLG +S G D+ D++V G Y+CGEETAL Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLG-DSACGTDIKFDVMVQRG-DRYLCGEETAL 235 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N G Sbjct: 236 INCLMGKLGRPRRRPPFLTEKGYFEHPCLVVNAESIAVVPTILRRGSQWWAGLGRSYNTG 295 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKL+ ISG VN PCTVEE MSI +LIE+H GG++GGWD L AV PGG S P L Sbjct: 296 TKLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDKLAAVFPGGLSTPLLDPSTA 355 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +MD+D L + GSG G AVIV+ + D + + R F++ +C QCT CR+G W+ Sbjct: 356 GKVLMDFDSLADAGSGFGCGAVIVISKDCDPLAVMLRSIQFFEKHTCKQCTYCRDGAIWL 415 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R VKG EID ++ + + ICAL + + L++ F IEER+ Sbjct: 416 PEMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVAVAESLVRMFSRQIEERLL 475 Query: 418 QYHR 421 +Y + Sbjct: 476 KYAK 479 >gi|302553431|ref|ZP_07305773.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] gi|302471049|gb|EFL34142.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] Length = 449 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/389 (50%), Positives = 257/389 (66%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 42 YEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG +IA +AI + AFIY+RGE + L +AV E Y +G Sbjct: 101 PGTCKDIPLLFANPHSLIEGMIIACYAIRSSHAFIYLRGEVVPVLRRLHSAVREAYEAGF 160 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 161 LGENILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP I++RG W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 221 VNNVESIASVPAIMQRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 280 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q ++D L +++ NI G Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNING 397 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 398 KSFCALGDGAASPIFSSLKYFRDEYEQHI 426 >gi|300782456|ref|YP_003762747.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] gi|299791970|gb|ADJ42345.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] Length = 431 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/382 (52%), Positives = 255/382 (66%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + V K L + ++ VK SGLRGRGGAGF G+KWSFMP D+PHYLV+NADE E Sbjct: 30 YTAVRKALAGTPEQLVQLVKDSGLRGRGGAGFPAGIKWSFMPPNF-DKPHYLVINADEGE 88 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M +PH+LIEGC+IAS+A+ ++ FIYVRGE + L AAV E A+G Sbjct: 89 PGTCKDIPLMMADPHSLIEGCIIASYAMRSNHCFIYVRGEALHCIRRLNAAVREAEAAGY 148 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G+D+ I VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY PTT Sbjct: 149 LGENILGSGFDLKITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAAAGLYAAPTT 208 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+IA P I+ G+SW+ GRE + G K++SISGHV P E + T EL++ Sbjct: 209 VNNVETIASAPFIVNGGSSWFREMGREKSPGPKIYSISGHVEKPGQYECPLGTTLRELLD 268 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG++ G L PGGSS P + +D++G E GS LGT AV V + + Sbjct: 269 M-AGGMKDGIP-LKFWTPGGSSTPMFTVEHLD-VPLDFEGAAEAGSMLGTTAVQVFNETV 325 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 + A+ + + FY+HESCG+CTPCREGT W+ +++ER+V+G + +ID L +V NI G Sbjct: 326 SVPWAVMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEEDIDTLLDVCDNILG 385 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 R+ CALGD A PI IK FR Sbjct: 386 RSFCALGDGAVSPITSGIKYFR 407 >gi|195486237|ref|XP_002091420.1| GE12249 [Drosophila yakuba] gi|194177521|gb|EDW91132.1| GE12249 [Drosophila yakuba] Length = 481 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/425 (45%), Positives = 258/425 (60%), Gaps = 4/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W +LE+G +WI+ ++ SGLRGRGGAGF Sbjct: 58 LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWIMEQIGKSGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S + P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSAKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG S G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGDSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 297 KLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPPTAG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L++ GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLQDAGSGFGCGAVIVMTKDCDPLAVMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVGVAESLVRMFSRQIEERLLK 476 Query: 419 YHRCN 423 Y + + Sbjct: 477 YAKAS 481 >gi|72163089|ref|YP_290746.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX] gi|71916821|gb|AAZ56723.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX] Length = 438 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/403 (49%), Positives = 257/403 (63%), Gaps = 8/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L G ++ + K L D I+ VKASGLRGRGGAGF TGMKW F+PK + +P Sbjct: 19 TLDAYRENGGYEALRKALTMEPDAIVEMVKASGLRGRGGAGFPTGMKWGFLPK-DNPKPR 77 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD +M PH LIEG +I+++AI +H AFIYVRGE + L+ Sbjct: 78 YLVVNADESEPGTCKDIPLMMANPHALIEGVIISAYAINSHQAFIYVRGEVLHVIRRLRH 137 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E Y +GLLG + G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA Sbjct: 138 AVAEAYEAGLLGKDILGSGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPPFPA 197 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT VNNVESIA VP+I+ GA W+ G E + G FS+SGHV P E Sbjct: 198 VAGLYASPTVVNNVESIATVPSIVANGAEWFKSMGTEKSAGFGFFSLSGHVKRPGQYEAP 257 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + +T EL+E GGIR G L PGGSS P + +D++ + GS LGT Sbjct: 258 LGVTLRELLEM-AGGIRDG-HRLKFWTPGGSSTPIFTEEHID-IPLDFESVGGAGSMLGT 314 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ + D +T +++ + FY HESCG+CTPCREG WM++V+ R+ G + +ID Sbjct: 315 RALQIFDETTSVVRVVRGWIEFYAHESCGKCTPCREGNYWMVQVLRRIEAGKGTQEDIDT 374 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 L ++ N+ GR+ CALGD A + IK FR EE I H Sbjct: 375 LLDICDNLLGRSFCALGDGATSSVTSAIKYFR---EEFIAGTH 414 >gi|326329615|ref|ZP_08195937.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium Broad-1] gi|325952611|gb|EGD44629.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium Broad-1] Length = 436 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/403 (51%), Positives = 267/403 (66%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 +L + G ++ +D L + + VK SGLRGRGGAGF TG+KW F+P + P Sbjct: 20 TLPAYTATGGYEALDVALRMAPEDVQTTVKDSGLRGRGGAGFPTGVKWGFLPPPDPENPK 79 Query: 78 -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YLVVNADESEPGTCKD +M PHTL+EG +I+S+AI A AFIYVRGE + L Sbjct: 80 PRYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRAERAFIYVRGEVLHVIRRL 139 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 QAAV E YA+G LG+N GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 140 QAAVREAYAAGHLGTNIHGSGYDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 199 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT +NN ESIA VP I++ GASW++G G E + G +FS+SGHV P E Sbjct: 200 PAVAGLYASPTVINNAESIASVPAIVKNGASWFAGMGTEKSAGVGIFSLSGHVKKPGQYE 259 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT +LIE GG+R G L PGGSS P + +D++G+ GS L Sbjct: 260 APLGITLRQLIEL-AGGVREG-HELKFWTPGGSSTPLFTQEHLD-VTLDFEGVAAAGSML 316 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ + D S +++A+ R + FYKHESCG+CTPCREGT W+++V+ERL KG + ++ Sbjct: 317 GTRALQIFDDSVCVVRAVLRWTEFYKHESCGKCTPCREGTWWLVQVLERLEKGDGKPEDL 376 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL + NI GR+ CALGD A PI IK FR ++Q Sbjct: 377 DLLLDQCDNILGRSFCALGDGATSPITSSIKYFRDEYLAHLEQ 419 >gi|328950036|ref|YP_004367371.1| NADH-quinone oxidoreductase, F subunit [Marinithermus hydrothermalis DSM 14884] gi|328450360|gb|AEB11261.1| NADH-quinone oxidoreductase, F subunit [Marinithermus hydrothermalis DSM 14884] Length = 442 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/420 (47%), Positives = 269/420 (64%), Gaps = 12/420 (2%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61 R LY G+ +L ++ G ++ K L + D +I EVK SGLRGRGGAGF Sbjct: 15 RFVRTLYAHVGRPNSWTLEYYLAHGGYEAARKALTRMTPDEVIEEVKKSGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK + HY+V NADESEPG+ KDR ++ +PH LIEG +IA +AI A Sbjct: 75 TGVKWSFMPKEPKTQ-HYIVCNADESEPGSFKDRYLLEDDPHQLIEGMIIAGYAIRATKG 133 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVRGE+ R + L AA+ E YA G LG N G+ D+ VH GAGAYICGEETAL+ Sbjct: 134 YVYVRGEYRRAYDRLTAAIREAYAKGYLGENLFGSGFSFDLYVHRGAGAYICGEETALMN 193 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PR+KPPFPA GLYG PTT+NNVE++ V I+ RGA W+ G E ++G K Sbjct: 194 SLEGLRANPRMKPPFPAQSGLYGKPTTINNVETLCSVVHIIERGADWFGQMGTERSKGHK 253 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299 LF ISG V P E + TF ELI GG + + A+IPGGSS P +P ++ Sbjct: 254 LFQISGPVRRPGVYELPLGTTFRELIYDWAGGPT---EPIKAIIPGGSSTPPVPWTDEVL 310 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358 + MDY+ + +G+ LGT VI++ S I+ A+W ++ FY HESCG+CTPCREG +GW+ Sbjct: 311 DSPMDYEHCQRLGTLLGTGGVILIPESVCIVNAMWNVTRFYAHESCGKCTPCREGVSGWL 370 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ E++ +G + +++LL + NIEG+ C L DAA WP++G +K+FR E I+ Sbjct: 371 PKLFEKIERGRGEPGDVELLENLLDNIEGKAFCPLADAAVWPVRGSLKHFRHEYEHHIEH 430 >gi|312131899|ref|YP_003999239.1| NADH dehydrogenase subunit f [Leadbetterella byssophila DSM 17132] gi|311908445|gb|ADQ18886.1| NADH dehydrogenase subunit F [Leadbetterella byssophila DSM 17132] Length = 446 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/409 (50%), Positives = 264/409 (64%), Gaps = 20/409 (4%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 G + V+K L+ D ++ EVK SG+RGRGGAGF GMKWSF+ K P YLV N Sbjct: 24 HGGYSAVEKALKTMSPDEVVEEVKKSGIRGRGGAGFPMGMKWSFLAK-PEGVPRYLVCNG 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KD +M++ PH LIEG +++SFA+GA+ +FIYVRGE + L+ A++E Sbjct: 83 DESEPGTFKDHYLMKNIPHLLIEGMIVSSFALGANKSFIYVRGELMYVIRILEKAIEEAK 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 A+G LG N GYD++++V G GAYICGEETALLESLEGK+G PR KPPFPA GLY Sbjct: 143 AAGFLGKNILGTGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPFPAVKGLYE 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVESIA P I+ G Y+ G + GTKL S SG+V P E + + + Sbjct: 203 SPTVVNNVESIANTPWIVNNGGDAYASIGIGRSTGTKLISASGNVKKPGVYEIELGVPVE 262 Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310 E I +++ GGIR G L AV+ GGSSVP LPA G+ R +M Y+ L + Sbjct: 263 EFIYSDEYLGGIRDG-HYLKAVVAGGSSVPILPANLILKTAGGEQR--LMTYESLSDGGF 319 Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 G+ LG+ IVMD + I++ W S FY HESCGQC+PCREGTGW+ +V+ R+ G Sbjct: 320 ATGTMLGSGGFIVMDETNCIVRNTWNFSRFYHHESCGQCSPCREGTGWLEKVLYRIEHGQ 379 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +R+IDLL +V+K IEG TIC LGDAAAWP+ I++FR E I Sbjct: 380 GNERDIDLLVDVAKRIEGNTICPLGDAAAWPVGSAIRHFRDEFEWHIKN 428 >gi|310818918|ref|YP_003951276.1| NADH dehydrogenase I subunit f [Stigmatella aurantiaca DW4/3-1] gi|309391990|gb|ADO69449.1| NADH dehydrogenase I, subunit F [Stigmatella aurantiaca DW4/3-1] Length = 445 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/420 (47%), Positives = 274/420 (65%), Gaps = 16/420 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q +L RG ++++ K LE II+EVK S LRGRGGAGF TG+KWSF+PK + Sbjct: 19 QSWTLEHYRKRGGYESLKKALEMAPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NP 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YL VNADESEPGT KDR I+ +PH ++EG IA++A+G H +IY+RGEF + Sbjct: 78 KPKYLTVNADESEPGTFKDRYILSLDPHMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQR 137 Query: 136 LQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 QAA+ E YA+G+ G + LG Y+++ + GAGAYICGEETALLESLEGKKG PRLKP Sbjct: 138 TQAAIQEAYAAGIFG-KTLLGRDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKP 196 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA VGL+G PT +NNVE+++ VP I RGA WYS G + + GT+L +SG VN P Sbjct: 197 PFPAVVGLFGSPTVINNVETLSNVPHIFARGADWYSKLGTDKSGGTRLVCLSGTVNRPGV 256 Query: 254 VEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + T ELI +K+ G+ G ++ AVIPGGSS P L ++ A ++++ L+ Sbjct: 257 YEIPLQTTVSELIFGDKYGQGLPAG-RSVKAVIPGGSSAPVLSPNELDVA-LEFEALRLK 314 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 + G+ VIVMD ++ +++ +WR++ FY ESCGQCTPCREGT W R++ ++ +G + Sbjct: 315 QTMAGSGGVIVMDDTSCMVRCLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGE 374 Query: 372 KREIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +I++L V+ +I G TICALGDAAA P + FR E I + RC F Sbjct: 375 MADIEMLSHVASSIAPYPPMGLGNTICALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 433 >gi|256785936|ref|ZP_05524367.1| NuoF, NADH dehydrogenase subunit [Streptomyces lividans TK24] Length = 448 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/389 (50%), Positives = 255/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 41 YEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 99 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E YA+G Sbjct: 100 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGF 159 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 160 LGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 219 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 220 VNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 279 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 280 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 336 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q ++D L +++ NI G Sbjct: 337 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNING 396 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR EE I Sbjct: 397 KSFCALGDGAASPIFSSLKYFREEYEEHI 425 >gi|124487823|gb|ABN11995.1| putative NADH dehydrogenase (ubiquinone) flavoprotein 1 [Maconellicoccus hirsutus] Length = 266 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/259 (67%), Positives = 208/259 (80%) Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 +H GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV+NVE++AV PTI R Sbjct: 1 MHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLFGCPTTVSNVETVAVSPTICR 60 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 RG W+ FGR N GTKLF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLLA Sbjct: 61 RGGDWFVSFGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLA 120 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 VIPGGSS P +P +MD+DGL + LGTAAVIVM++ TD++KAI RL +FYKH Sbjct: 121 VIPGGSSTPLIPKKVCEDVMMDFDGLVAAQTSLGTAAVIVMNKQTDVVKAIARLIMFYKH 180 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCGQCTPCREG WM ++M R V G Q EID+L+E+SK IEG TICALGD AAWP+Q Sbjct: 181 ESCGQCTPCREGINWMNKMMYRFVDGNGQTPEIDMLWELSKQIEGHTICALGDGAAWPVQ 240 Query: 403 GLIKNFRPLIEERIDQYHR 421 GLI++FRP IE RI ++ + Sbjct: 241 GLIRHFRPEIERRISEFQK 259 >gi|21222950|ref|NP_628729.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289769829|ref|ZP_06529207.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans TK24] gi|7387968|sp|Q9XAQ9|NUOF_STRCO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|5042272|emb|CAB44526.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289700028|gb|EFD67457.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans TK24] Length = 449 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/389 (50%), Positives = 255/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 42 YEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E YA+G Sbjct: 101 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGF 160 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 161 LGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 221 VNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 280 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMFTDEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 337 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q ++D L +++ NI G Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNING 397 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR EE I Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEEHI 426 >gi|312890391|ref|ZP_07749928.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603] gi|311297161|gb|EFQ74293.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603] Length = 453 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/403 (49%), Positives = 259/403 (64%), Gaps = 16/403 (3%) Query: 25 SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 S+G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ K YLV N Sbjct: 23 SKGGYAAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVARYLVCN 81 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR +M + PH LIEG ++AS+A+GA ++IYVRGE + + L+ A+ E Sbjct: 82 ADESEPGTFKDRFLMTYIPHLLIEGMIVASYALGAKVSYIYVRGEMMPQIRILEKAIAEA 141 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 G LG N GYD+++ V G GAYICGEETALLESLEGK+G PR+KPPFPA GLY Sbjct: 142 KNKGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLY 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 GCPT VNNVESIA V I+ G Y+ G + GTKL S SG++ P E + + Sbjct: 202 GCPTVVNNVESIAAVVPIINDGGEEYAKIGIGRSTGTKLISASGNIKNPGIYEIELGVPV 261 Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE---- 310 +E + +++CGG+ G A++ GGSSVP LPA + I M Y+ L + Sbjct: 262 EEFLYSDEYCGGMANG-KRFKALVAGGSSVPILPANLVTKTINQEARLMSYESLSDGGFA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ +G+ IV D I++ W + FY HESCGQC+PCREGTGWM +V+ RL G Sbjct: 321 TGTMMGSGGFIVFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTGWMEKVLHRLEYGHG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + ++DLL +VSK IEG TIC LGDAAAWP+ I++FR E Sbjct: 381 KMSDMDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFE 423 >gi|256380660|ref|YP_003104320.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM 43827] gi|255924963|gb|ACU40474.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM 43827] Length = 431 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 192/377 (50%), Positives = 252/377 (66%), Gaps = 5/377 (1%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K L+ D +I + K SGLRGRGGAGF TGMKW F+P+ +PHYLV+NADE EPGTCK Sbjct: 35 KALKVHPDQLIQQCKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGEPGTCK 93 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152 D +M +PH+L+EG +I S+AI A+ A IYVRGE + L AAV E Y +G LG + Sbjct: 94 DIPLMMADPHSLVEGIIITSYAIRANFAAIYVRGEVLHVIRRLNAAVREAYEAGYLGKDI 153 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G+D+D++VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY PT VNNVE Sbjct: 154 LGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPATAGLYASPTVVNNVE 213 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 +IA VP ++ G+ W+ GR+ + G K++S+SGHV P E M T L+E GG Sbjct: 214 TIASVPYVVNGGSDWFRTMGRDRSPGPKIYSLSGHVERPGQYEAPMGTTLRTLLE-MAGG 272 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 ++ G L PGGSS P A + +D++G+ E GS LGT AV + + + + A Sbjct: 273 MKDGVP-LKFWTPGGSSTPLFTAEHLD-VPLDFEGVAEAGSMLGTTAVQIFNETVSVPWA 330 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + + + FYKHESCG+CTPCREGT W+ + ++R+V+G +ID L +V NI GR+ CA Sbjct: 331 VMKWTEFYKHESCGKCTPCREGTYWLTKTLQRMVRGEGTPSDIDTLLDVCSNILGRSFCA 390 Query: 393 LGDAAAWPIQGLIKNFR 409 LGD A PI IK F+ Sbjct: 391 LGDGAVSPITSGIKYFK 407 >gi|84494925|ref|ZP_00994044.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649] gi|84384418|gb|EAQ00298.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649] Length = 437 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/368 (52%), Positives = 245/368 (66%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ K SGLRGRGGAGF TGMKW F+P P YLVVNADESEPGTCKD +M P Sbjct: 44 LVQMTKDSGLRGRGGAGFPTGMKWGFLPPP-DGGPRYLVVNADESEPGTCKDIPLMMAAP 102 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 LIEGCVI S+AIG + AFIY+RGE + L AV+E YA+G LG N G+D+DI Sbjct: 103 QFLIEGCVITSYAIGCNHAFIYLRGEVVHVYRRLLRAVEEAYAAGHLGKNIHGSGFDLDI 162 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY PT VNNVESIA +P I Sbjct: 163 TVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAVAGLYARPTVVNNVESIASIPPIF 222 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA W+S G E ++G +FS+SGHV +P E + IT EL++ GG+R L Sbjct: 223 LHGADWFSDMGTEKSQGFGIFSLSGHVKHPGQYEAPLGITLRELLDM-AGGMRDPEKALK 281 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 PGGSS P A + +D++ + GS LGT A+ + D +T +++A+ R + FYK Sbjct: 282 FWTPGGSSTPLFTAEHLD-TPLDFESVAAAGSMLGTRALQIFDETTCVVRAVDRWTDFYK 340 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 HESCG+CTPCREGT W+ +++ RL G + ++D L ++ NI GR+ CALGD A PI Sbjct: 341 HESCGKCTPCREGTWWLKQILGRLEHGQGSEEDLDKLLDICDNILGRSFCALGDGATSPI 400 Query: 402 QGLIKNFR 409 I+ FR Sbjct: 401 TSSIQYFR 408 >gi|297625733|ref|YP_003687496.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921498|emb|CBL56052.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 446 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/372 (51%), Positives = 245/372 (65%), Gaps = 5/372 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ VKASGLRGRGGAGF TGMKWSF+P+ + +P YLVVN DESEPGTCKD ++ P Sbjct: 45 VIDLVKASGLRGRGGAGFPTGMKWSFIPQD-NPKPKYLVVNCDESEPGTCKDMPMLIATP 103 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 HTL+EG +IA +A+ AH AFI+ RGE + L AV E Y G LG + GYD+DI Sbjct: 104 HTLLEGIIIACYAVNAHHAFIFCRGEVLHAIRRLSQAVREAYDKGYLGKDLFGTGYDLDI 163 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 +VH GAGAYICGEETALL +LEG +GQPRL+PPFPA GLY CPT VNN ESIA VP I+ Sbjct: 164 VVHSGAGAYICGEETALLSALEGHRGQPRLRPPFPAVEGLYACPTVVNNAESIASVPAIV 223 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA WY G E ++G ++S+SGHV P E + ITF +++E GG+R G L Sbjct: 224 RNGAEWYQSMGTEKSKGATIYSLSGHVKRPGQFEAPLGITFRQILELG-GGVRDG-HQLK 281 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 PGGSS P Q+ +DY+G+ GS LGT A+ V D +T +++ R + FYK Sbjct: 282 FFTPGGSSTPMFTPEQLD-VPLDYEGVSAAGSILGTKALQVFDETTSVVRTTLRWTEFYK 340 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 HESCG+CTPCREG+ W+++ + L G Q+ ++D L +V N+ ++ C L D I Sbjct: 341 HESCGKCTPCREGSWWLVQTLRNLEAGKGQEGDVDKLLDVCDNVSMKSFCTLADGFVACI 400 Query: 402 QGLIKNFRPLIE 413 IK+FR E Sbjct: 401 TSAIKHFRSEFE 412 >gi|182436772|ref|YP_001824491.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465288|dbj|BAG19808.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp. griseus NBRC 13350] Length = 460 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 44 YEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 102 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E Y +G Sbjct: 103 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 162 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 163 LGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 222 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 223 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 282 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 283 M-SGGMRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 339 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 340 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 399 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 400 KSFCALGDGAASPIFSSLKYFREEYEQHI 428 >gi|239943481|ref|ZP_04695418.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL 15998] gi|239989935|ref|ZP_04710599.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL 11379] gi|291446952|ref|ZP_06586342.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998] gi|291349899|gb|EFE76803.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998] Length = 459 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 43 YEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E Y +G Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 162 LGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 222 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 281 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 282 M-SGGMRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 338 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 398 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHI 427 >gi|320009199|gb|ADW04049.1| NADH-quinone oxidoreductase, F subunit [Streptomyces flavogriseus ATCC 33331] Length = 457 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 43 YEGLRKALAMEPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E Y +G Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161 Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 162 LGTNVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 222 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 281 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GGIR G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 282 M-SGGIREG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 338 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q ++D L +++ NI G Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMADLDKLNDIADNING 398 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHI 427 >gi|326777367|ref|ZP_08236632.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus XylebKG-1] gi|326657700|gb|EGE42546.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus XylebKG-1] Length = 459 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 43 YEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E Y +G Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 162 LGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 222 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 281 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 282 M-SGGMRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 338 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 398 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHI 427 >gi|331699307|ref|YP_004335546.1| NADH-quinone oxidoreductase subunit F [Pseudonocardia dioxanivorans CB1190] gi|326953996|gb|AEA27693.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia dioxanivorans CB1190] Length = 450 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/373 (52%), Positives = 251/373 (67%), Gaps = 7/373 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDI 97 D +IN VK SGLRGRGGAGF TGMKWSF+P+ + +P YLV+NADE EPGTCKD Sbjct: 54 DQLINLVKDSGLRGRGGAGFPTGMKWSFIPQGPTGAGAKPKYLVINADEGEPGTCKDIPT 113 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLG 156 M +PH+LIEGCVI S+AI A+ IYVRGE + L+ AV+E YA G LG + G Sbjct: 114 MMADPHSLIEGCVITSYAIRANFCAIYVRGEALHCIRRLRRAVEEAYAKGYLGRDILGSG 173 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +D+DI+VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY PT VNNVE+IA Sbjct: 174 FDLDIVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPATSGLYASPTVVNNVETIAS 233 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 VP I+ G++W+ G E + G K++S+SGHV P E + T EL+E GG++ G Sbjct: 234 VPDIVAGGSAWFRTMGTERSPGPKIYSLSGHVERPGQYEAPLGTTLRELLEL-AGGMKDG 292 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L PGGSS P A + +D++G GS LGT AV + + + + A+ + Sbjct: 293 IP-LKFWTPGGSSTPLFTAEHLD-VPLDFEGAAAAGSMLGTTAVQIFNETVSVPWAVMKW 350 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + FYKHESCG+CTPCREGT W+++++ER+V G ++D + ++ NI GR+ CALGD Sbjct: 351 TEFYKHESCGKCTPCREGTYWLVQILERMVHGEGTPEDVDTMLDICDNILGRSFCALGDG 410 Query: 397 AAWPIQGLIKNFR 409 A PI IK FR Sbjct: 411 ATSPITSAIKYFR 423 >gi|294814399|ref|ZP_06773042.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] gi|326442789|ref|ZP_08217523.1| NADH dehydrogenase I chain F [Streptomyces clavuligerus ATCC 27064] gi|294326998|gb|EFG08641.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] Length = 458 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 50 YQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 108 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG +IA +AI ++ AFIY+RGE + L AV E Y +G Sbjct: 109 PGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRRLHEAVREAYEAGY 168 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 169 LGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 228 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G + + G L+S+SGHV P E + IT +L++ Sbjct: 229 VNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQYEAPLGITLRQLLD 288 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P L + +DY+G+ GS LGT A+ D +T Sbjct: 289 M-SGGMRPG-HRLKFWTPGGSSTPLLTEEHLD-VPLDYEGVAAAGSMLGTKALQCFDETT 345 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 346 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPADLDKLADIADNING 405 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ CALGD AA PI ++ FR E +D Sbjct: 406 KSFCALGDGAASPIFSSLRYFRAEYEAHLD 435 >gi|169629225|ref|YP_001702874.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium abscessus ATCC 19977] gi|169241192|emb|CAM62220.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium abscessus] Length = 434 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/401 (51%), Positives = 266/401 (66%), Gaps = 5/401 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L + G + + L D +I VK +GLRGRGGAGF TG KWSF+P+ +PH Sbjct: 21 TLDGYLRHGGYRGLRTALGMDPDAVIALVKEAGLRGRGGAGFPTGAKWSFIPQ-GDGKPH 79 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD +M PHTLIEG VIA+FAI A AFIYVRGE I L A Sbjct: 80 YLVVNADESEPGTCKDIPLMLATPHTLIEGIVIAAFAIRASQAFIYVRGEVISVIRRLHA 139 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV + Y +G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA Sbjct: 140 AVAQAYKAGYLGRNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 199 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT VNNVESIA VP ILRRGA W+ G E + G L+S+SGHV P E Sbjct: 200 VAGLYASPTVVNNVESIASVPVILRRGAEWFRTMGTEKSPGFTLYSLSGHVRTPGQYEAP 259 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + +T +L+E GG+R G L PGGSS P A Q+ +DY+G+ GS LGT Sbjct: 260 LGVTLRQLLEL-AGGVRDG-RALKFWTPGGSSTPLFTAEQLD-VPLDYEGVSAAGSMLGT 316 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ + D +T +++A+ R + FY HESCG+CTPCREGT W++R+++RL G + ++D Sbjct: 317 KALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVRILQRLESGEGKAEDLDK 376 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++S + G++ CALGD AA PI +K FR E +D Sbjct: 377 LLDISDIVLGKSFCALGDGAASPIMSSLKYFRTEYEAHLDN 417 >gi|195583606|ref|XP_002081608.1| GD25625 [Drosophila simulans] gi|194193617|gb|EDX07193.1| GD25625 [Drosophila simulans] Length = 481 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ ++ SGLRGRGGAGF Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P ++VN E EPGTCKDR+I+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGW+NL AV PGG S P L Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476 Query: 419 YHR 421 Y + Sbjct: 477 YAK 479 >gi|254391142|ref|ZP_05006349.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] gi|197704836|gb|EDY50648.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] Length = 456 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 48 YQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 106 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG +IA +AI ++ AFIY+RGE + L AV E Y +G Sbjct: 107 PGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRRLHEAVREAYEAGY 166 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 167 LGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 226 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G + + G L+S+SGHV P E + IT +L++ Sbjct: 227 VNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQYEAPLGITLRQLLD 286 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P L + +DY+G+ GS LGT A+ D +T Sbjct: 287 M-SGGMRPG-HRLKFWTPGGSSTPLLTEEHLD-VPLDYEGVAAAGSMLGTKALQCFDETT 343 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 344 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPADLDKLADIADNING 403 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ CALGD AA PI ++ FR E +D Sbjct: 404 KSFCALGDGAASPIFSSLRYFRAEYEAHLD 433 >gi|195334585|ref|XP_002033958.1| GM20146 [Drosophila sechellia] gi|194125928|gb|EDW47971.1| GM20146 [Drosophila sechellia] Length = 481 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ ++ SGLRGRGGAGF Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P ++VN E EPGTCKDR+I+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGW+NL AV PGG S P L Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476 Query: 419 YHR 421 Y + Sbjct: 477 YAK 479 >gi|290958255|ref|YP_003489437.1| NADH dehydrogenase subunit NuoF [Streptomyces scabiei 87.22] gi|260647781|emb|CBG70886.1| NuoF, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 452 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/389 (50%), Positives = 254/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 42 YEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+L+EG +IA +AI + AFIY+RGE + L AV E Y +G Sbjct: 101 PGTCKDIPLLFANPHSLVEGMIIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGF 160 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 161 LGENILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 220 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L+E Sbjct: 221 VNNVESIASVPAILHKGKEWFRSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLE 280 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 397 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 398 KSFCALGDGAASPIFSSLKYFRAEYEDHI 426 >gi|284992920|ref|YP_003411474.1| NADH-quinone oxidoreductase subunit F [Geodermatophilus obscurus DSM 43160] gi|284066165|gb|ADB77103.1| NADH-quinone oxidoreductase, F subunit [Geodermatophilus obscurus DSM 43160] Length = 442 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/378 (51%), Positives = 250/378 (66%), Gaps = 12/378 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--------CSDRPHYLVVNADESEPGTC 92 D ++ VK SGLRGRGGAGF TGMKWSF+P+ + P YLVVNADE EPGTC Sbjct: 40 DELVGMVKDSGLRGRGGAGFPTGMKWSFIPQPKPGETPTGPAALPKYLVVNADEGEPGTC 99 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 KD +M +PH+L+EG VIAS+AI +H A IYVRGE + L AV E Y +G LG++ Sbjct: 100 KDLPLMMADPHSLVEGVVIASYAIRSHLAVIYVRGEAVHAHRRLVNAVREAYEAGYLGTD 159 Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 GYD+++IVH GAGAYICGEETALL+SLEG +GQPRLKPPFPA GLYG PT +NNV Sbjct: 160 ILGSGYDLELIVHAGAGAYICGEETALLDSLEGYRGQPRLKPPFPAVAGLYGAPTVINNV 219 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++A VP ++R G+ W+ FG E + G K++S+SG V P E M T EL+E G Sbjct: 220 ETLASVPFVVRGGSDWFKEFGPERSPGPKIYSLSGRVVRPGQYEAPMGTTMRELLEM-AG 278 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G + L PGGSS P + +D+D + GS LGT A++V D + I++ Sbjct: 279 GVRPGHE-LKFWTPGGSSTPYFTPEHLD-VPLDFDSVAAAGSMLGTTALMVFDETDSIVE 336 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 A R + FY HESCG+CTPCREGT W+++V++RLV G ++DLL + NI GR+ C Sbjct: 337 ATLRFTEFYAHESCGKCTPCREGTYWLVQVLQRLVDGRGTAADLDLLTDTCDNILGRSFC 396 Query: 392 ALGDAAAWPIQGLIKNFR 409 ALGD A I +K FR Sbjct: 397 ALGDGATSCISSSLKYFR 414 >gi|258593430|emb|CBE69769.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [NC10 bacterium 'Dutch sediment'] Length = 427 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/425 (48%), Positives = 278/425 (65%), Gaps = 10/425 (2%) Query: 5 QDRIFTNLYGLQGK--SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 ++I T + + G +L + + G + + K+L E +I VK SGLRGRGGAGF Sbjct: 2 SEKILTKRFEIPGYRGTLDEYEATGGYQAIAKVLKEHTPTSLIELVKRSGLRGRGGAGFP 61 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F+PK SD P YLV NADESEPGT KDR+++ +PH L+EG ++ FAIG A Sbjct: 62 TGVKWGFVPK-GSDLPKYLVCNADESEPGTFKDRELIMRDPHQLLEGILLGGFAIGCRAA 120 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179 +IY+RGE + L+ AV + A GL+G + LG + +D+ VH GAGAYICGEETALL Sbjct: 121 YIYIRGELVAGARILEQAVSDAAARGLVGKDI-LGSRFSLDLHVHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PRLKPPFPA GLY PT VNNVE++ +P I+ RGA W++G G + GT Sbjct: 180 ESLEGKRGLPRLKPPFPATSGLYRKPTVVNNVETLCNIPHIVMRGAEWFAGIGTPKSTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++F +SGHV P E + + ELI +H GGIR G L AVIPGGSSVP L + Sbjct: 240 RIFGVSGHVRRPGIYECRIDVPMRELIFEHAGGIREG-RRLKAVIPGGSSVPVLTERHL- 297 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD++ L GS G+ VIVMD +T +++ +S FY HESCGQCT CREGT W+ Sbjct: 298 DARMDFESLATAGSMAGSGGVIVMDDTTCMVRVGEIVSRFYHHESCGQCTQCREGTAWLH 357 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + + R+ +G ++ ++DLL ++ N++G+TIC L DAAA PI+ +K FR E+ I + Sbjct: 358 KTLRRIEEGRGRQADLDLLLDICDNMKGKTICPLSDAAAMPIESYLKYFRDEFEQHIVE- 416 Query: 420 HRCNF 424 H C F Sbjct: 417 HACPF 421 >gi|29831385|ref|NP_826019.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680] gi|29608500|dbj|BAC72554.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces avermitilis MA-4680] Length = 449 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/402 (50%), Positives = 261/402 (64%), Gaps = 7/402 (1%) Query: 18 KSLSDSMSRGH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 KS + + R H ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 29 KSWTLDVYRRHEGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 88 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMVIACYAIRSSHAFIYLRGEVVPVLRR 147 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E YA+G LG N G D++I VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 148 LHEAVREAYAAGYLGKNILGSGLDLEITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 208 FPAVAGLYACPTVVNNVESIASVPAILHKGKEWFRSMGSEKSPGFTLYSLSGHVASPGQY 267 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ GG+R G L PGGSS P + +DY+G+ GS Sbjct: 268 EAPLGITLRQLLDM-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSM 324 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMTD 384 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +D L +++ NI G++ CALGD AA PI +K FR E+ I Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHI 426 >gi|302559102|ref|ZP_07311444.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus Tu4000] gi|302476720|gb|EFL39813.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus Tu4000] Length = 449 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/389 (50%), Positives = 254/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 42 YEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E +G Sbjct: 101 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAREAGF 160 Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 161 LGENVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP I+ RG W+ G E + G L+S+SGHV P E + IT +L+E Sbjct: 221 VNNVESIASVPAIMNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLE 280 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q ++D L +++ NI G Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMADLDKLNDIADNING 397 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR EE I Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEEHI 426 >gi|282860724|ref|ZP_06269790.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE] gi|282564460|gb|EFB69996.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE] Length = 457 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 43 YEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E Y +G Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 162 LGANILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 222 VNNVESIASVPAILNRGKDWFKSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 281 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 282 M-SGGMRAG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 338 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 398 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ + Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHV 427 >gi|269955282|ref|YP_003325071.1| NADH-quinone oxidoreductase subunit F [Xylanimonas cellulosilytica DSM 15894] gi|269303963|gb|ACZ29513.1| NADH-quinone oxidoreductase, F subunit [Xylanimonas cellulosilytica DSM 15894] Length = 448 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/408 (49%), Positives = 255/408 (62%), Gaps = 6/408 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL ++ ++ + K L I+ VK SGLRGRGGAGF TGMKW F+P +P Sbjct: 19 SLDTYLAHDGYEGLRKALTMAPADIVAAVKESGLRGRGGAGFPTGMKWGFLPPD-DGKPR 77 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD +M P L+EG I S AI H AFIYVRGE + + A Sbjct: 78 YLVVNADESEPGTCKDIPLMMASPQHLVEGVAITSVAINCHHAFIYVRGEVLHVYRRVLA 137 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E Y +G LG + G+D+D+ VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA Sbjct: 138 AVQEAYDAGYLGKDILGSGFDLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPA 197 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLY PT VNNVESIA VP+I+R GA+W++ G E ++G LFS+SGHV P E Sbjct: 198 VEGLYARPTVVNNVESIASVPSIVRNGAAWFASMGTEKSQGMGLFSLSGHVTRPGQYEAP 257 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + IT EL++ GGIR G L PGGSS P + +DY+ + S LGT Sbjct: 258 LGITLRELLDM-AGGIRAG-HTLKFWTPGGSSTPMFTDAHLD-VPLDYESVGAAKSMLGT 314 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A+ + D +T +++A R FY HESCG+CTPCREGT WM +V+ R+ G +++L Sbjct: 315 RALQIFDETTCVVRATSRWMDFYAHESCGKCTPCREGTFWMKQVLARIEAGGGVDGDLEL 374 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 L ++ NI GR CALGD A P+ I+ FR + ID H C F Sbjct: 375 LVDLCDNILGRAFCALGDGATSPVTSSIELFRDEYQAHIDG-HACPFD 421 >gi|159899603|ref|YP_001545850.1| NADH-quinone oxidoreductase subunit F [Herpetosiphon aurantiacus ATCC 23779] gi|159892642|gb|ABX05722.1| NADH-quinone oxidoreductase, F subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 422 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/379 (51%), Positives = 253/379 (66%), Gaps = 4/379 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+EVK SGLRGRGGAGF TG+KWSF+PK + P YLVVNADESEPGT + +I+ P Sbjct: 47 IIDEVKKSGLRGRGGAGFPTGVKWSFVPKELN--PKYLVVNADESEPGTFNNHEIIDENP 104 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG VI++FAIGA+ A+IY+RGEF L+ + E A GL+G N GYDV+I Sbjct: 105 HQLLEGIVISAFAIGANVAYIYIRGEFAYGARFLEQKIAEARARGLIGKNLFGTGYDVEI 164 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAGAYICGEETALLESLEGK GQPRLKPPFPA GLY PT VNNVE++ VP I+ Sbjct: 165 YVHRGAGAYICGEETALLESLEGKIGQPRLKPPFPAVAGLYAKPTVVNNVETLTNVPRII 224 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +GA W+ FG E + GTK SISGHV P E + IT E I GG+R L Sbjct: 225 EKGADWFRSFGTEKSPGTKAVSISGHVKKPGNYEIPLGITIREFIFDWAGGMRDPNLPLK 284 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 +IPGG+S L Q M +D + G+ LG+ A++V+D S +++A ++ F+K Sbjct: 285 FIIPGGASSNWL-TEQHLDLPMTWDDMAAAGTMLGSGAMVVLDTSVPVVRAALKVDEFFK 343 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 HESCG+C+PCREGT ++++V ER+ +G + +I+LL +V K + G+ C LGD++ + Sbjct: 344 HESCGKCSPCREGTHFLVKVWERIDEGHGRVGDIELLADVGKQMLGKCFCPLGDSSVSAV 403 Query: 402 QGLIKNFRPLIEERIDQYH 420 IK FRP ++ ID H Sbjct: 404 NSAIKFFRPELDAAIDAQH 422 >gi|218515777|ref|ZP_03512617.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli 8C-3] Length = 446 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/421 (47%), Positives = 263/421 (62%), Gaps = 8/421 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ G LS + G + + K+L E D +I+ VK S LRGRGGAGF TGMKW Sbjct: 31 LLKNVDVRDGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKW 90 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+PK + +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+R Sbjct: 91 GFVPKR-TGKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 149 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV--HHGAGAYICGEETALLESLEG 184 GE++ L+ A+ E +A G LG LG D + V H GAGAYICGEETA+LESLEG Sbjct: 150 GEYVTAIRRLEQAIAEAHAKGYLGKRI-LGSDFNFAVRIHCGAGAYICGEETAMLESLEG 208 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RGA W+ G G E + G KL+ + Sbjct: 209 KRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPEKSPGPKLYCL 268 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E M I EL+E H GG+ G + AVIPGG S P +P + MD Sbjct: 269 SGQVRKPGLYELPMGIALRELVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHGLEVG-MD 326 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++V+ R Sbjct: 327 FDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIVEFFHHESCGKCTPCREGLNWVVKVLRR 386 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G +++ L + K I G T CALGD AA ++ + +FR ID HRC F Sbjct: 387 IEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIDD-HRCPF 445 Query: 425 Q 425 Sbjct: 446 H 446 >gi|329935992|ref|ZP_08285792.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus M045] gi|329304470|gb|EGG48348.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus M045] Length = 462 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/389 (50%), Positives = 254/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 54 YEGLRKALAMSPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 112 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E YA+G Sbjct: 113 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 172 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG + G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 173 LGKDILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 232 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL+ G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 233 VNNVESIASVPAILKNGKDWFRSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 292 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 293 M-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 349 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 350 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 409 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 + CALGD AA PI +K FR EE I Sbjct: 410 KAFCALGDGAASPIFSSLKYFRAEYEEHI 438 >gi|314925995|gb|EFS89826.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA3] Length = 444 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/389 (48%), Positives = 259/389 (66%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + P YLVVN D Sbjct: 27 QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + +Q AV E Y+ Sbjct: 86 ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E M T + Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ GG+R G + L PGGSS P L + +DY+G+ + LGT A+ D Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G +Q+ ++D L +++ N Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGESQEGDVDKLMDIADN 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A ++G I +FR E Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411 >gi|298246355|ref|ZP_06970161.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM 44963] gi|297553836|gb|EFH87701.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM 44963] Length = 443 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/398 (48%), Positives = 260/398 (65%), Gaps = 9/398 (2%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G ++ + K L+ D I+ E+K SGLRGRGGAGF TGMKWSF+ K +D+P YL N+DE Sbjct: 27 GGYEALAKALKSEPDQIVEEIKKSGLRGRGGAGFPTGMKWSFLAK--NDKPRYLCCNSDE 84 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGT KDR +M PH L+EG +I S+A AFIY+RGE + +Q AVDE Y + Sbjct: 85 SEPGTFKDRMLMERNPHLLVEGVLITSYACRVKTAFIYIRGELPYAADQVQRAVDEAYEA 144 Query: 147 GLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GL+GSN LG Y +D+IVH GAGAYICGEE+AL+ESLEG++G PRLKPPFPA VGLYG Sbjct: 145 GLIGSNI-LGSDYSIDVIVHRGAGAYICGEESALMESLEGRRGYPRLKPPFPAVVGLYGG 203 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NN E++ VP I+ +G +Y+ FG E ++GT++F +SGHV P E ++ I Sbjct: 204 PTVINNCETLCTVPAIIEQGGEYYASFGTEKSKGTRIFGLSGHVKKPGNYEVALGIPLRT 263 Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 L+ E++ GGI + AVIPGGSS L ++ MDY+ + GS LG+ VIV Sbjct: 264 LLYDEQYGGGILNDR-QVKAVIPGGSSTFFLGPDKLD-IPMDYESVAAAGSMLGSGGVIV 321 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 ++ T I+ I R FY+ ESCG+CTPCREGT W+ ++ERL G + ++IDLL + Sbjct: 322 INDETCIVGTIARAVEFYRDESCGKCTPCREGTYWLTELLERLEHGHGKMKDIDLLTSIC 381 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 NI G++ C LGDAA I ++ FR E + H Sbjct: 382 GNISGKSFCPLGDAATSLITSGVRMFREEFEYHVTHGH 419 >gi|50843381|ref|YP_056608.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202] gi|289425637|ref|ZP_06427409.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK187] gi|289426990|ref|ZP_06428709.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J165] gi|50840983|gb|AAT83650.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202] gi|289153938|gb|EFD02631.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK187] gi|289159812|gb|EFD07997.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J165] gi|313763289|gb|EFS34653.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA1] gi|313793603|gb|EFS41643.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA1] gi|313802886|gb|EFS44099.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA2] gi|313806332|gb|EFS44848.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA2] gi|313813679|gb|EFS51393.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA1] gi|313814971|gb|EFS52685.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA1] gi|313819443|gb|EFS57157.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA2] gi|313821249|gb|EFS58963.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA1] gi|313822296|gb|EFS60010.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA2] gi|313826146|gb|EFS63860.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA1] gi|313829365|gb|EFS67079.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA2] gi|313838154|gb|EFS75868.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL086PA1] gi|314916743|gb|EFS80574.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA4] gi|314919131|gb|EFS82962.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA1] gi|314921211|gb|EFS85042.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA3] gi|314930361|gb|EFS94192.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL067PA1] gi|314956144|gb|EFT00540.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA1] gi|314959677|gb|EFT03779.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA1] gi|314962251|gb|EFT06352.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA2] gi|314963235|gb|EFT07335.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA1] gi|314969778|gb|EFT13876.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA1] gi|314979336|gb|EFT23430.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA2] gi|314986332|gb|EFT30424.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA2] gi|314988571|gb|EFT32662.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA3] gi|315079688|gb|EFT51676.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA2] gi|315083921|gb|EFT55897.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA2] gi|315085058|gb|EFT57034.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA3] gi|315089487|gb|EFT61463.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA1] gi|315098099|gb|EFT70075.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA2] gi|315102683|gb|EFT74659.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA1] gi|315107937|gb|EFT79913.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA1] gi|315108825|gb|EFT80801.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA2] gi|327325714|gb|EGE67511.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA3] gi|327333127|gb|EGE74854.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL097PA1] gi|327447753|gb|EGE94407.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA2] gi|327451636|gb|EGE98290.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA3] gi|327452289|gb|EGE98943.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA2] gi|327452506|gb|EGE99160.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL092PA1] gi|328752122|gb|EGF65738.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA2] gi|328755066|gb|EGF68682.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL020PA1] gi|328757014|gb|EGF70630.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA1] gi|332676324|gb|AEE73140.1| NADH-quinone oxidoreductase subunit F [Propionibacterium acnes 266] Length = 444 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/389 (48%), Positives = 258/389 (66%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + P YLVVN D Sbjct: 27 QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + +Q AV E Y+ Sbjct: 86 ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E M T + Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ GG+R G + L PGGSS P L + +DY+G+ + LGT A+ D Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++D L +++ N Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A ++G I +FR E Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411 >gi|332883539|gb|EGK03822.1| NADH oxidoreductase, F subunit [Dysgonomonas mossii DSM 22836] Length = 451 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/404 (48%), Positives = 267/404 (66%), Gaps = 16/404 (3%) Query: 27 GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G + +V+K L+ D ++ EVK SG+RGRGGAGF G+KWSF+ K S +P +LVVNAD Sbjct: 25 GGYASVEKALKTMTPDEVVEEVKTSGVRGRGGAGFPMGLKWSFIDKK-SGKPRHLVVNAD 83 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++ + L+ A+ E YA Sbjct: 84 ESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKAIKEAYA 143 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N GY++D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA GL+G Sbjct: 144 NGWLGKNILGTGYNLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWGE 203 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVESI+ V I+ G + Y+ G + GTKL S SGH+ P E + +T DE Sbjct: 204 PTVVNNVESISTVSWIINNGGAEYAKIGVGKSTGTKLMSASGHIKNPGVYEIELGLTVDE 263 Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLKE----MG 312 +++CGG+ L AVIPGG SVP LP + ++ Y+ L + G Sbjct: 264 FFNSDEYCGGMLDD-RPLKAVIPGGCSVPILPPQYIFKTANGEDRLISYESLADGGFVTG 322 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ IV + + I++ W S F+ HESCGQC+PCREGTGWM +++ R+ G ++ Sbjct: 323 SSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIETGQGRE 382 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +IDLL+ + IEG TIC LGDAA+WP+ I++FR E + Sbjct: 383 EDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHV 426 >gi|282855269|ref|ZP_06264601.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J139] gi|282581857|gb|EFB87242.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J139] gi|314923989|gb|EFS87820.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL001PA1] gi|314965053|gb|EFT09152.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA2] gi|314983073|gb|EFT27165.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA3] gi|315090606|gb|EFT62582.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA4] gi|315093907|gb|EFT65883.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL060PA1] gi|315104126|gb|EFT76102.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA2] Length = 444 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/389 (48%), Positives = 258/389 (66%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + P YLVVN D Sbjct: 27 QGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + +Q AV E Y+ Sbjct: 86 ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRVQQAVREAYS 145 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G +G N GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY Sbjct: 146 AGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E M T + Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYEAPMGTTLRQ 265 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ GG+R G + L PGGSS P L + +DY+G+ + LGT A+ D Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++D L +++ N Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A ++G I +FR E Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411 >gi|327325781|gb|EGE67573.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL103PA1] Length = 444 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/389 (48%), Positives = 258/389 (66%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + P YLVVN D Sbjct: 27 QGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + +Q AV E Y+ Sbjct: 86 ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRVQQAVREAYS 145 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G +G N GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY Sbjct: 146 AGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E M T + Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYEAPMGTTLRQ 265 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ GG+R G + L PGGSS P L + +DY+G+ + LGT A+ D Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++D L +++ N Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A ++G I +FR E Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411 >gi|332830193|gb|EGK02821.1| NADH oxidoreductase, F subunit [Dysgonomonas gadei ATCC BAA-286] Length = 457 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/404 (48%), Positives = 265/404 (65%), Gaps = 16/404 (3%) Query: 27 GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G + +V+K L+ D ++ +VK SG+RGRGGAGF GMKWSF+ K S +P +LVVNAD Sbjct: 25 GGYASVEKALKTMTPDEVVEQVKTSGMRGRGGAGFPMGMKWSFIDKK-SGKPRHLVVNAD 83 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++ + L+ A+ E YA Sbjct: 84 ESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKAIKEAYA 143 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N GYD+D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA GL+ Sbjct: 144 NGWLGKNILGTGYDLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWNE 203 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVESI+ V I+ G Y+ G + GTKL S SGH+ P E + ++ DE Sbjct: 204 PTVVNNVESISTVSWIINNGGEEYAKIGIGRSTGTKLMSASGHIKNPGVYEIELGMSVDE 263 Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLKE----MG 312 +++CGG+ L AVIPGG SVP LP + ++ Y+ L + G Sbjct: 264 FFNSDEYCGGMLDD-RPLKAVIPGGCSVPILPPQYIFKTANGEDRLLSYESLSDGGFVTG 322 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ IV + + I++ W S F+ HESCGQC+PCREGTGWM +++ R+ G ++ Sbjct: 323 SSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIETGFGRE 382 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +IDLL+ + IEG TIC LGDAA+WP+ I++FR E + Sbjct: 383 EDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHV 426 >gi|315445434|ref|YP_004078313.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1] gi|315263737|gb|ADU00479.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1] Length = 438 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/405 (50%), Positives = 271/405 (66%), Gaps = 7/405 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72 Q ++ + G + +++ L D +I VK SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 QPWTMDTYIRHGGYQALERALAMSPDEVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + +PHYLV+NADESEPGTCKD +M PH L+EG +IA++AI AH AFIY+RGE + Sbjct: 76 AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E YA+G LG + G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL++ + GG+R G L PGGSS P L A + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELLD-YAGGVRAG-HELKFWTPGGSSTPLLTADHLD-VPLDYEGMAGV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL G Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++D L ++S NI G++ CALGD AA PI +K+FR E + Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL 417 >gi|194754954|ref|XP_001959757.1| GF11875 [Drosophila ananassae] gi|190621055|gb|EDV36579.1| GF11875 [Drosophila ananassae] Length = 520 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/422 (46%), Positives = 258/422 (61%), Gaps = 6/422 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W ILE G DW+++++K S LRGRGGAGF Sbjct: 85 LKDSDRIFQNLYGRHDWRLKGACQRGDWHKTGDILELGPDWMMDQIKQSALRGRGGAGFY 144 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 KW F+ +V S++ P LVVN E EPGTCKDR+I+RHEPH LIEG ++A IG Sbjct: 145 CATKWEFLKQVKSEKVPKMLVVNCAEGEPGTCKDREILRHEPHKLIEGILLAGVTIGCGR 204 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178 A IY+R F E +L A+ E Y GL+G + G D+ DI++ G Y+CGEETA+ Sbjct: 205 AIIYIRNRFYNEACNLHYALAEAYHHGLVGDGA-CGTDIKFDIMIQRG-DRYLCGEETAM 262 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L L G+ G+PR +PPF G + P V N ES++V+PT+LRRG W++G GR N G Sbjct: 263 LNCLMGELGRPRRRPPFLTEKGYFNHPCLVVNAESLSVLPTLLRRGPCWWTGLGRSYNAG 322 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISG VN PCTVEE MS+ E+IE H GG++GGW+NLLAV PGG S L Sbjct: 323 TKLFCISGEVNNPCTVEEEMSMPMREIIELHAGGVQGGWENLLAVFPGGLSTALLGPEAA 382 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 G +MD+D L+ GSGLG ++IVM + D + + R FY+ +C QCT CR+G W+ Sbjct: 383 GGVMMDFDCLEAAGSGLGCGSIIVMSKKCDPLAIMHRAIEFYEEHTCKQCTYCRDGAIWL 442 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R G A EID ++ I+ R ICALG + A + +++ F I +RI Sbjct: 443 PELFGRFATGQAHPHEIDWTSVIADKIKNSRPICALGVSQAITAESMVRMFSEQINQRIV 502 Query: 418 QY 419 ++ Sbjct: 503 KF 504 >gi|229821704|ref|YP_002883230.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM 12333] gi|229567617|gb|ACQ81468.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM 12333] Length = 439 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/395 (50%), Positives = 253/395 (64%), Gaps = 11/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L RG + +++ + + I++ VKASGLRGRGGAGF TG+KWSF+P P Sbjct: 32 TLEAYRERGGYRALEEARSRKPEEIVDAVKASGLRGRGGAGFPTGLKWSFLPP-PDGGPR 90 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD +M PH LIEG I S+AIG AFIY+RGE + L A Sbjct: 91 YLVVNADESEPGTCKDIPLMLANPHALIEGSAITSYAIGCDHAFIYLRGEVVHVYRRLLA 150 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 AV E A+GLLG + I VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA Sbjct: 151 AVREAEAAGLLGG-------LRITVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPAV 203 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GLY PT VNNVESIA VP+I+ G W++ G E + G LFS+SGHV P E + Sbjct: 204 AGLYARPTVVNNVESIASVPSIVLGGPEWFTSMGTEKSAGFGLFSLSGHVTRPGQYEAPL 263 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT EL++ GG+R G + L PGGSS P L + +DY+ + GS L T Sbjct: 264 GITLRELLDL-AGGVRDGHE-LKFWTPGGSSTPIL-TDEHLDVPLDYESVAGAGSMLATR 320 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +++ RL +G ++D L Sbjct: 321 ALQIFDETTSVVRAVARWTDFYAHESCGKCTPCREGTYWLKQILHRLEEGRGTAEDLDTL 380 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 E++ NI GR+ CA GDAA PIQ +K FR E Sbjct: 381 DEITANIAGRSFCAFGDAAVTPIQSGMKYFRSEFE 415 >gi|313836205|gb|EFS73919.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA2] gi|314927640|gb|EFS91471.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL044PA1] gi|314971361|gb|EFT15459.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA3] gi|328906298|gb|EGG26073.1| NADH dehydrogenase I chain F [Propionibacterium sp. P08] Length = 444 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/389 (48%), Positives = 256/389 (65%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + + L D +++ V+ + LRGRGGAGF TGMKWSF+PK + P YLVVN D Sbjct: 27 QGGYTGLRHALTMQPDEVVSLVRDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + +Q AV E Y+ Sbjct: 86 ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKVAFIYIRGEVLHVIRRVQQAVREAYS 145 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP ILR G W+ G E + G ++S+SGHV +P E M IT + Sbjct: 206 PTVINNVESISTVPAILRNGKEWFKSMGTEKSDGFTIYSLSGHVAHPGQYEAPMGITLRQ 265 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L+ GG+R G + L PGGSS P L + +DY+G+ + LGT A+ D Sbjct: 266 LL-GISGGMRQGHE-LKFFTPGGSSTPILAKDDLD-LPLDYEGMAGAKTMLGTKALQCFD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++D L +++ N Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLLDIADN 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A ++G I +FR E Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411 >gi|255037830|ref|YP_003088451.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM 18053] gi|254950586|gb|ACT95286.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM 18053] Length = 446 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/398 (50%), Positives = 260/398 (65%), Gaps = 16/398 (4%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +G + V+K ++ + ++ E K SG+RGRGGAGF GMKW F+ K P YLV NA Sbjct: 24 QGGYTAVEKAIKTMTPEEVVEEAKKSGVRGRGGAGFPMGMKWGFLAK-PEGVPRYLVCNA 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KD +M+ PH LIEG +I+SFA+GA+ +FIYVRGE + L+ A+ E Sbjct: 83 DESEPGTFKDHHLMKCIPHLLIEGMIISSFALGANKSFIYVRGELMYVIRILEKAIAEAK 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 A G LG N GYD++++V G GAYICGEETALLESLEGK+G PR KPPFPA GLY Sbjct: 143 AQGFLGKNILGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPFPAVKGLYQ 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVESI+ +P I+ G Y+ G + GTKL S SGH+ P E + ++ + Sbjct: 203 SPTVVNNVESISNMPWIINNGGDAYAQIGIGRSTGTKLISASGHIQKPGVYEIELGVSVE 262 Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRGA-----IMDYDGLKE----M 311 E + +++CGGIR G +L A++ GGSSVP LPA M+ A +M Y+ L + Sbjct: 263 EFLNSDEYCGGIRKG-HHLKALVAGGSSVPILPANLIMKTAAGEDRLMTYESLSDGGFAT 321 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ LG+ IV D + I++ W S FY HESCGQC+PCREGTGWM +V+ R+ G Sbjct: 322 GTMLGSGGFIVFDETACIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLHRIEHGHGS 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +IDLL ++SK IEG TIC LGDAAAWP+ I++FR Sbjct: 382 MHDIDLLVDISKKIEGNTICPLGDAAAWPVASAIRHFR 419 >gi|118471561|ref|YP_886419.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis str. MC2 155] gi|118172848|gb|ABK73744.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis str. MC2 155] Length = 443 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/390 (52%), Positives = 263/390 (67%), Gaps = 12/390 (3%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD--------RPHYL 80 + + + L G D +I VK SGLRGRGGAGF TG KWSF+P+ D +PHYL Sbjct: 29 YQGLQRALSMGPDDVIAFVKDSGLRGRGGAGFPTGTKWSFIPQERGDQPAGGPAAKPHYL 88 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 V+NADESEPGTCKD ++ PH L+EG +IA++AI A AFIYVRGE + LQAAV Sbjct: 89 VINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRARHAFIYVRGEVLPVLRRLQAAV 148 Query: 141 DECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 E YA+G LG++ G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL+PPFPA Sbjct: 149 AEAYAAGYLGTDIMGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVA 208 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GLY CPT VNNVESIA VP I+ G W+ G E + G L+S+SGHV P E + Sbjct: 209 GLYACPTVVNNVESIASVPPIMVNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLG 268 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 IT EL+E + GG+R G L PGGSS P L A + +DY+G+ +GS LGT A Sbjct: 269 ITLRELLE-YAGGVRAG-HQLKFWTPGGSSTPLLTAEHLD-VPLDYEGMASVGSMLGTKA 325 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 + + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ RL G + +ID L Sbjct: 326 LQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLENGAGTEADIDKLL 385 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++S NI G++ CALGD AA PI IK+FR Sbjct: 386 DISDNIFGKSFCALGDGAASPIMSSIKHFR 415 >gi|193215709|ref|YP_001996908.1| NADH-quinone oxidoreductase subunit F [Chloroherpeton thalassium ATCC 35110] gi|193089186|gb|ACF14461.1| NADH-quinone oxidoreductase, F subunit [Chloroherpeton thalassium ATCC 35110] Length = 432 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/385 (51%), Positives = 256/385 (66%), Gaps = 7/385 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + N+ K L + I+ EVK SGLRGRGGAGF TGMKW F+ K +P YL VN DE Sbjct: 28 GGYQNLRKALVMKPEEIVGEVKKSGLRGRGGAGFPTGMKWGFVGKA---KPRYLAVNGDE 84 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPG+ KDR I PH LIEGC+I+ +A+ +IY+RGE+ + + ++ A+ E Sbjct: 85 SEPGSFKDRQIFEFNPHQLIEGCLISCYALDVETCYIYIRGEYAKWIDIVETALAEARQK 144 Query: 147 GLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 G +G N LG D +I VH GAGAYICGEE+AL+ S+EGK+ PRLKPPFPA VGL+G Sbjct: 145 GYVGKNI-LGKDFSAEIYVHRGAGAYICGEESALMNSIEGKRAYPRLKPPFPAVVGLWGQ 203 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+I +P I+ GA YS G ++ G L+ +SGHVN P E + + Sbjct: 204 PTVINNVETITNIPLIIEIGAEAYSKIGAPDHPGPMLYGLSGHVNKPGIYEYPSGMAITD 263 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 LI GGIRGG L AVIPGGSS+P L A + G M+ D LK+ G+ +GTA +I+MD Sbjct: 264 LIYDIGGGIRGG-KKLKAVIPGGSSMPILRADMIEGVTMNADSLKKAGTSIGTAGMIIMD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 TDI+ AI RL+ FY HESCGQCTPCREGTGW+ + ++ ++ A+ R+IDLL + K Sbjct: 323 EDTDIVAAIARLTHFYHHESCGQCTPCREGTGWIEHIYKKFLRDEAEPRDIDLLLSLCKQ 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409 IE RTICAL D AAWP++ I+ FR Sbjct: 383 IEQRTICALADGAAWPVRFSIERFR 407 >gi|307318106|ref|ZP_07597542.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] gi|306896147|gb|EFN26897.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] Length = 421 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/421 (47%), Positives = 268/421 (63%), Gaps = 8/421 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TGMKW Sbjct: 6 LLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK + +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+R Sbjct: 66 SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 GE++ ++ A+ E + +G LG LG D + +VH GAGAYICGEETA+LESLEG Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGIGI-LGSDFNFMVHIHRGAGAYICGEETAMLESLEG 183 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ + Sbjct: 184 KRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVTRGSAWFRGIGPDRSPGPKLYCL 243 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ MD Sbjct: 244 SGQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGISAPVIPEGELE-VSMD 301 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ R Sbjct: 302 FDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRR 361 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC F Sbjct: 362 IEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRCPF 420 Query: 425 Q 425 Sbjct: 421 H 421 >gi|315081016|gb|EFT52992.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL078PA1] Length = 444 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/389 (48%), Positives = 257/389 (66%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + P YLVVN D Sbjct: 27 QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PH L+EG +IAS+AI A AFIY+RGE + +Q AV E Y+ Sbjct: 86 ESEPGTCKDMPLMMASPHILVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E M T + Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ GG+R G + L PGGSS P L + +DY+G+ + LGT A+ D Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++D L +++ N Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A ++G I +FR E Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411 >gi|295131455|ref|YP_003582118.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK137] gi|291376367|gb|ADE00222.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK137] gi|313773335|gb|EFS39301.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL074PA1] gi|313810762|gb|EFS48476.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA1] gi|313831073|gb|EFS68787.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL007PA1] gi|313833203|gb|EFS70917.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL056PA1] gi|314973943|gb|EFT18039.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA1] gi|314976871|gb|EFT20966.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL045PA1] gi|314984993|gb|EFT29085.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA1] gi|315097694|gb|EFT69670.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL038PA1] gi|327330838|gb|EGE72583.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA2] gi|327442869|gb|EGE89523.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA2] gi|327445261|gb|EGE91915.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA1] gi|328761550|gb|EGF75068.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL099PA1] Length = 444 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/389 (48%), Positives = 257/389 (66%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + P YLVVN D Sbjct: 27 QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + +Q AV E Y+ Sbjct: 86 ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP+ILR W+ G E + G ++S+SGH+ +P E M T + Sbjct: 206 PTVINNVESISTVPSILRNSKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ GG+R G + L PGGSS P L + +DY+G+ + LGT A+ D Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++D L +++ N Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A ++G I +FR E Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411 >gi|302536173|ref|ZP_07288515.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C] gi|302445068|gb|EFL16884.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C] Length = 459 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/389 (49%), Positives = 255/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 51 YEGLRKALAMTPDEVIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 109 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+L+EG +IA +AI + AFIY+RGE + L AV E YA+G Sbjct: 110 PGTCKDIPLLFANPHSLVEGMIIACYAIRSEHAFIYLRGETVPVLRRLHEAVREAYAAGY 169 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG + G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 170 LGKDIDGTGRNLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 229 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 230 VNNVESIASVPAILNKGKDWFKAMGTEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 289 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 290 M-SGGMRPG-HRLKFWTPGGSSTPMFTDEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 346 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 347 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 406 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ + Sbjct: 407 KSFCALGDGAASPIFSSLKYFREEYEQHV 435 >gi|307304399|ref|ZP_07584150.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] gi|306902601|gb|EFN33195.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] Length = 421 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/420 (46%), Positives = 267/420 (63%), Gaps = 6/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TGMKW Sbjct: 6 LLRNIDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK + +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+R Sbjct: 66 SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE++ ++ A+ E + +G LG G++ + +H GAGAYICGEETA+LESLEGK Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESLEGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 + QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ +S Sbjct: 185 RAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYCLS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ MD+ Sbjct: 245 GQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELEVG-MDF 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ R+ Sbjct: 303 DSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRRI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC F Sbjct: 363 EAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRCPFH 421 >gi|16263282|ref|NP_436075.1| NuoF2 NADH I chain F [Sinorhizobium meliloti 1021] gi|17380453|sp|P56913|NUOF2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 2; AltName: Full=NADH dehydrogenase I subunit F 2; AltName: Full=NDH-1 subunit F 2 gi|14523959|gb|AAK65487.1| NuoF2 NADH:quinone oxidoreductase (chain F) [Sinorhizobium meliloti 1021] Length = 421 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/420 (46%), Positives = 267/420 (63%), Gaps = 6/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TGMKW Sbjct: 6 LLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK + +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+R Sbjct: 66 SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE++ ++ A+ E + +G LG G++ + +H GAGAYICGEETA+LESLEGK Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESLEGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 + QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ +S Sbjct: 185 RAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYCLS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ MD+ Sbjct: 245 GQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELEVG-MDF 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ R+ Sbjct: 303 DSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRRI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC F Sbjct: 363 EAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRCPFH 421 >gi|5650749|emb|CAB51634.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 421 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/422 (46%), Positives = 267/422 (63%), Gaps = 10/422 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TGMKW Sbjct: 6 LLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK + +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+R Sbjct: 66 SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 GE++ ++ A+ E + +G LG SK + V I H GAGAYICGEETA+LESLE Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGVGILGSKFNFMVHI--HRGAGAYICGEETAMLESLE 182 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ Sbjct: 183 GKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYC 242 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ M Sbjct: 243 LSGQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELEVG-M 300 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ Sbjct: 301 DFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLR 360 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 R+ G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 361 RIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRCP 419 Query: 424 FQ 425 F Sbjct: 420 FH 421 >gi|190893218|ref|YP_001979760.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652] gi|190698497|gb|ACE92582.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli CIAT 652] Length = 421 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/412 (48%), Positives = 261/412 (63%), Gaps = 8/412 (1%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS + G + + K+L E D +I+ VK S LRGRGGAGF TGMKW F+PK + Sbjct: 15 GHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKWGFVPKR-TG 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+RGE++ Sbjct: 74 KPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRR 133 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVH-H-GAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +A G LG LG D + VH H GAGAYICGEETA+LESLEGK+ QPRLKP Sbjct: 134 LEQAIAEAHARGYLGKRI-LGSDFNFAVHIHCGAGAYICGEETAMLESLEGKRAQPRLKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY PT +NNVE++A VP I+ RGA W+ G G + + G KL+ +SG V P Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLYCLSGQVRKPGL 252 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M I EL+E H GG+ G + AVIPGG S P +P + MD+D L GS Sbjct: 253 YELPMGIALRELVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHGLEVG-MDFDSLAAAGS 310 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++V+ R+ G Sbjct: 311 MLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVLRRIEAGDGAPG 370 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +++ L + K I G T CALGD AA ++ + +FR I+ HRC F Sbjct: 371 DLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIED-HRCPFH 421 >gi|110637782|ref|YP_677989.1| NADH dehydrogenase I subunit F [Cytophaga hutchinsonii ATCC 33406] gi|110280463|gb|ABG58649.1| NADH dehydrogenase subunit F [Cytophaga hutchinsonii ATCC 33406] Length = 448 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 205/408 (50%), Positives = 268/408 (65%), Gaps = 16/408 (3%) Query: 25 SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 S+G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ + S+ P YLV N Sbjct: 23 SKGGYRAVEKALKTMSPDDVMEEVKKSGLRGRGGAGFPTGMKWSFLDRK-SNNPRYLVCN 81 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR +M PH LIEG +++S+++G++ +IY+RGE+ L+ A+ E Sbjct: 82 ADESEPGTFKDRYLMEKNPHILIEGLIVSSYSLGSNSTYIYIRGEYKWIVGILEKAIAEA 141 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 +G LG N G+D++I V++G GAYICGEETAL+ESLEGK+G PR+KPPFPA GLY Sbjct: 142 KNAGFLGKNILGSGFDLEIYVNNGGGAYICGEETALIESLEGKRGNPRIKPPFPAISGLY 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 CPT VNNVE++A V I+ G Y+ G + GTKL S GH+N P E + + Sbjct: 202 NCPTVVNNVETLATVTPIINMGGDEYAKLGIGKSTGTKLISACGHLNRPGVYEIDLGLPV 261 Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRGA-----IMDYDGLKE---- 310 DE + +++CGGIR G + L AVI GGSSVP LPA MR A +M Y+ L + Sbjct: 262 DEFLNSDEYCGGIRKGHE-LKAVIAGGSSVPILPAELFMRNAAGEARLMSYESLSDGGFA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ LG+ I MD +T I+ W L+ FY HESCGQC+PCREGTGWM +V+ RL G Sbjct: 321 TGTMLGSGGFIAMDETTCIVHNTWTLARFYHHESCGQCSPCREGTGWMEKVLHRLEFGHG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +IDLL E++ IEG TIC LGDAAAWP+ I++FR E + Sbjct: 381 HMHDIDLLVEIASKIEGNTICPLGDAAAWPVAAAIRHFRDEFEYHVTH 428 >gi|327191026|gb|EGE58080.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli CNPAF512] Length = 421 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/412 (48%), Positives = 260/412 (63%), Gaps = 8/412 (1%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS + G + + K+L E D +I+ VK S LRGRGGAGF TGMKW F+PK + Sbjct: 15 GHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKWGFVPKR-TG 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+RGE++ Sbjct: 74 KPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRR 133 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +A G LG LG D + VH GAGAYICGEETA+LESLEGK+ QPRLKP Sbjct: 134 LEQAIAEAHARGYLGKRI-LGSDFNFAVHIHCGAGAYICGEETAMLESLEGKRAQPRLKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY PT +NNVE++A VP I+ RGA W+ G G + + G KL+ +SG V P Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLYCLSGQVRKPGL 252 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M I +L+E H GG+ G + AVIPGG S P +P + MD+D L GS Sbjct: 253 YELPMGIALRDLVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHGLE-VRMDFDSLAAAGS 310 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++V+ R+ G Sbjct: 311 MLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVLRRIEAGDGAPG 370 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +++ L + K I G T CALGD AA ++ + +FR I Q HRC F Sbjct: 371 DLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHI-QDHRCPFH 421 >gi|317123850|ref|YP_004097962.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043] gi|315587938|gb|ADU47235.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043] Length = 443 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/381 (51%), Positives = 245/381 (64%), Gaps = 5/381 (1%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K L+ ++ VK S +RGRGGAGF TG+KWSFM P YLVVNADESEPGTCK Sbjct: 35 KALDMAPADVLGAVKDSSIRGRGGAGFPTGLKWSFM-SPPDGGPRYLVVNADESEPGTCK 93 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152 D +M PH LIEG +I+S+AIG AFIY+RGE + L AV+E A+G LG + Sbjct: 94 DIPLMMANPHALIEGAIISSYAIGCEHAFIYLRGEVVHVYRRLLRAVEEARAAGYLGDDV 153 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G V+I VH GAGAYICGEETALL+SLEG++GQPRLKPPFP GLY PT+VNNVE Sbjct: 154 GGKGVKVNITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPGAAGLYARPTSVNNVE 213 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 SIA VP I+ RG W+ G G E + G +FS+SGHV +P E + IT ELIE GG Sbjct: 214 SIASVPGIILRGPDWFKGMGTEKSTGFGIFSLSGHVTHPGQFEAPLGITMRELIEL-AGG 272 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 +R G L PGGSS P + +D+D + GS LGT A+ V D + +++A Sbjct: 273 MRQG-HRLKFWTPGGSSTPIFTEEHLD-VPLDFDSVAAAGSMLGTRALQVFDETVSVVRA 330 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + R + FY HESCG+CTPCREGT W+ ++M R+ G + +ID L ++ NI GR+ CA Sbjct: 331 VSRWTDFYAHESCGKCTPCREGTWWLRQIMNRIENGKGTQDDIDKLVDICDNILGRSFCA 390 Query: 393 LGDAAAWPIQGLIKNFRPLIE 413 LGDAA PI +K FR E Sbjct: 391 LGDAATSPITSAVKYFREEFE 411 >gi|134103325|ref|YP_001108986.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL 2338] gi|291004456|ref|ZP_06562429.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL 2338] gi|133915948|emb|CAM06061.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL 2338] Length = 431 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/382 (53%), Positives = 259/382 (67%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + K L+ D +I VK +GLRGRGGAGF G+KWSFMPK +PHYLV+NADE E Sbjct: 34 YSALRKALKAHPDQLIELVKGAGLRGRGGAGFPAGVKWSFMPKE-PVKPHYLVINADEGE 92 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M +PH+LIEGCVIAS+A+ A+ IYVRGE + L +AV E YA+G Sbjct: 93 PGTCKDIPLMMADPHSLIEGCVIASYAMRANNCMIYVRGEALHCIRRLSSAVREAYAAGY 152 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G+D+DI+VH GAGAYICGEETALL+SLEGK+GQPRLKPPFPA GLY CPTT Sbjct: 153 LGKNILGSGFDLDIVVHAGAGAYICGEETALLDSLEGKRGQPRLKPPFPAAAGLYACPTT 212 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+IA VP I+ G+ W+ G E + G K++S+SGHV P E + T EL+E Sbjct: 213 VNNVETIASVPYIVNGGSDWFRLMGSEKSPGPKIYSVSGHVERPGQYEAPLGTTLRELLE 272 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG++ G L PGGSS P A + +D++G E GS LGT AV+V + + Sbjct: 273 L-AGGMKDGIP-LKFWTPGGSSTPLFTAEHLD-VPLDFEGAAEAGSMLGTTAVMVFNETV 329 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 + A+ + + FY+HESCG+CTPCREGT W+ +V+ER+V+G ++D L +V NI G Sbjct: 330 SVPWAVMKWTQFYEHESCGKCTPCREGTFWLAQVLERMVEGRGTPEDVDTLLDVCDNIFG 389 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 R+ CALGD A PI IK FR Sbjct: 390 RSFCALGDGAVSPITSGIKYFR 411 >gi|320160244|ref|YP_004173468.1| NADH-quinone oxidoreductase subunit F [Anaerolinea thermophila UNI-1] gi|319994097|dbj|BAJ62868.1| NADH-quinone oxidoreductase chain F [Anaerolinea thermophila UNI-1] Length = 426 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 187/379 (49%), Positives = 252/379 (66%), Gaps = 6/379 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++NEVK SGLRGRGGAGF TG+KWSF+P + PHY+V NADESEPGT KDR+I+ P Sbjct: 42 VVNEVKTSGLRGRGGAGFPTGVKWSFLPN--NIWPHYVVCNADESEPGTFKDREILESNP 99 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 L+EG +IAS+A+ A+ A+IY+RGEF + L + E +GLLG + Y + I Sbjct: 100 FQLLEGLMIASYAVQANRAYIYLRGEFWQIARKLDEKIAELEKAGLLGDHLFGTNYSLRI 159 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 H GAGAYICGEETALLESLEGK GQPRL+PPFPA GLYG PT +NNVE++ +P IL Sbjct: 160 YTHLGAGAYICGEETALLESLEGKIGQPRLRPPFPAVYGLYGKPTVINNVETLTNLPPIL 219 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +GA WY FG E + G K+FS+SG+VN P E + TF ELI H GGI G + Sbjct: 220 EKGAQWYRSFGTEKSPGVKIFSLSGNVNRPGNYELPLGTTFRELIYTHGGGIPEG-RKVK 278 Query: 282 AVIPGGSSVPCLPAGQ--MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A++P G+S + + MDY+ + +GS LG+A+VIV D + ++ + + F Sbjct: 279 AILPAGASSAIIAVNDDAILDTPMDYESVAAIGSQLGSASVIVADETVNMAWLVSKTVNF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 +KHESCG+CTPCREGT WM R+ +R++ G A + ++DLL V+ I G+ +CALG+ + Sbjct: 339 FKHESCGKCTPCREGTFWMNRITQRMMAGRAVESDVDLLANVANQIAGKCLCALGEFSVM 398 Query: 400 PIQGLIKNFRPLIEERIDQ 418 +Q I+ FR E++ Q Sbjct: 399 AVQTGIRQFRTDFLEQVKQ 417 >gi|293191721|ref|ZP_06609278.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309] gi|292820493|gb|EFF79475.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309] Length = 434 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 206/418 (49%), Positives = 255/418 (61%), Gaps = 12/418 (2%) Query: 8 IFTNLYGLQGKSLSDSM-SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I TN +G + DS SRG + ++K I+ VK SGLRGRGGAGF +G+KW Sbjct: 14 ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+R Sbjct: 74 SFLPP-ADGGPRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AV E +G+LG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT VNNVE+IA V I R W++ G E ++G +FS+SG Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPKWFASMGTEKSKGHGIFSVSG 245 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HVN P E IT ELIE GGIR G L PGGSS P ++ ++DY+ Sbjct: 246 HVNNPGQFEAPFGITMRELIEM-AGGIRDG-HKLKFWTPGGSSTPIFTEDELD-TLLDYE 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A+ V D + +++ I R S FY+HESCG+CTPCREGT WM ++M RL Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +G + ++DLL E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420 >gi|195027493|ref|XP_001986617.1| GH21461 [Drosophila grimshawi] gi|193902617|gb|EDW01484.1| GH21461 [Drosophila grimshawi] Length = 546 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 197/419 (47%), Positives = 263/419 (62%), Gaps = 3/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W +L+ G +WI++EVK SGLRGRGG+G+ Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW F+ KV ++ L++N E EPGTCKDR+I+RHEPH +IEGC++A +A+G Sbjct: 186 TGNKWEFLQKVNANN-KILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG N+ G DI V G Y+ GEETAL+ Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PP+ G + P V N E++AVVPTILRRGA W++G GR N GTK Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSI GHV +PCTVEE MS+ E+I+ H GG+ GGW+NLL V PGG S P + G Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L++ GS GT +IV+ + D + + R FY ++C QCTPCR+G W+ + Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQRSIEFYMKQTCKQCTPCRDGAIWLPK 483 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ KG + + ID + + K + G TIC L D+ A GLI +F P I++RI+ + Sbjct: 484 ILRNFTKGESVPQMIDFVAVICKTMIGTTICGLSDSQANVAMGLITHFAPHIQQRIEAF 542 >gi|55980058|ref|YP_143355.1| NADH-quinone oxidoreductase subunit 1 [Thermus thermophilus HB8] gi|2499313|sp|Q56222|NQO1_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 1; AltName: Full=NADH dehydrogenase I chain 1; AltName: Full=NDH-1 subunit 1 gi|90109654|pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109662|pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109670|pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109678|pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|258588588|pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588596|pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588604|pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588612|pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588620|pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588628|pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588636|pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588644|pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|296863604|pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|296863617|pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|1279866|gb|AAA97943.1| NADH dehydrogenase I, subunit NQO1 [Thermus thermophilus] gi|55771471|dbj|BAD69912.1| NADH-quinone oxidoreductase chain 1 [Thermus thermophilus HB8] Length = 438 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/421 (46%), Positives = 265/421 (62%), Gaps = 19/421 (4%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 R LY GK +L + G ++ ++L EK D +I EVK SGLRGRGGAGF Sbjct: 12 RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFP 71 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A Sbjct: 72 TGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 130 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+ R + L+ A+ E A G LG N + D+ VH GAGAYICGEETAL+ Sbjct: 131 YIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMN 190 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V I+ RGA W++ G E ++G K Sbjct: 191 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMK 250 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299 L+ ISG V P E M TF ELI + G G + + A+IPGGSS P LP ++ Sbjct: 251 LYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIPGGSSTPPLPFTEEVL 307 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358 M Y+ L+ GS LGT VI++ ++ A+W L+ FY HESCG+CTPCREG G+M Sbjct: 308 DTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFM 367 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + ++ G ++++++ L + IEGR+ C L DAA WP++G +++F+ DQ Sbjct: 368 VNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFK-------DQ 420 Query: 419 Y 419 Y Sbjct: 421 Y 421 >gi|46200217|ref|YP_005884.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27] gi|46197845|gb|AAS82257.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27] Length = 438 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 197/421 (46%), Positives = 265/421 (62%), Gaps = 19/421 (4%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 R LY GK +L + G ++ ++L EK D +I EVK SGLRGRGGAGF Sbjct: 12 RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFP 71 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A Sbjct: 72 TGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 130 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+ R + L+ A+ E A G LG N + D+ VH GAGAYICGEETAL+ Sbjct: 131 YIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMN 190 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V I+ RGA W++ G E ++G K Sbjct: 191 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMK 250 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299 L+ ISG V P E M TF ELI + G G + + A+IPGGSS P LP ++ Sbjct: 251 LYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIPGGSSTPPLPFTEEVL 307 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWM 358 M Y+ L+ GS LGT VI++ ++ A+W L+ FY HESCG+CTPCREG G+M Sbjct: 308 DTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFM 367 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + ++ G ++++++ L + IEGR+ C L DAA WP++G +++F+ DQ Sbjct: 368 VNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFK-------DQ 420 Query: 419 Y 419 Y Sbjct: 421 Y 421 >gi|115375223|ref|ZP_01462489.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca DW4/3-1] gi|115367785|gb|EAU66754.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca DW4/3-1] Length = 405 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 194/393 (49%), Positives = 262/393 (66%), Gaps = 16/393 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+EVK S LRGRGGAGF TG+KWSF+PK + +P YL VNADESEPGT KDR I+ +P Sbjct: 6 IIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NPKPKYLTVNADESEPGTFKDRYILSLDP 64 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVD 160 H ++EG IA++A+G H +IY+RGEF + QAA+ E YA+G+ G + LG Y+++ Sbjct: 65 HMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQRTQAAIQEAYAAGIFG-KTLLGRDYELN 123 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + GAGAYICGEETALLESLEGKKG PRLKPPFPA VGL+G PT +NNVE+++ VP I Sbjct: 124 CYLVRGAGAYICGEETALLESLEGKKGWPRLKPPFPAVVGLFGSPTVINNVETLSNVPHI 183 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGGIRGGWD 278 RGA WYS G + + GT+L +SG VN P E + T ELI +K+ G+ G Sbjct: 184 FARGADWYSKLGTDKSGGTRLVCLSGTVNRPGVYEIPLQTTVSELIFGDKYGQGLPAG-R 242 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 ++ AVIPGGSS P L ++ A ++++ L+ + G+ VIVMD ++ +++ +WR++ Sbjct: 243 SVKAVIPGGSSAPVLSPNELDVA-LEFEALRLKQTMAGSGGVIVMDDTSCMVRCLWRVAR 301 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-------GRTIC 391 FY ESCGQCTPCREGT W R++ ++ +G + +I++L V+ +I G TIC Sbjct: 302 FYAEESCGQCTPCREGTPWQTRLLRKIEEGRGEMADIEMLSHVASSIAPYPPMGLGNTIC 361 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 ALGDAAA P + FR E I + RC F Sbjct: 362 ALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 393 >gi|313679590|ref|YP_004057329.1| NADH dehydrogenase subunit f [Oceanithermus profundus DSM 14977] gi|313152305|gb|ADR36156.1| NADH dehydrogenase subunit F [Oceanithermus profundus DSM 14977] Length = 439 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 191/411 (46%), Positives = 256/411 (62%), Gaps = 13/411 (3%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61 R LY GK +L + G ++ +L K + ++ EVK SGLRGRGGAGF Sbjct: 13 RFTPTLYAHVGKPNSWTLDYYLGHGGYETARAVLTGKQPEEVVEEVKKSGLRGRGGAGFP 72 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP + HYL+ NADESEP + KDR +M +PH LIEG +I +AI A Sbjct: 73 TGVKWSFMPN--DGQQHYLIANADESEPASFKDRYLMEDDPHQLIEGMIIGGYAIRATKG 130 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGE+ + + L AA+ E Y G LG N G+D D+ VH GAGAYICGEETAL+ Sbjct: 131 YVYIRGEYRKAYDRLTAAIREAYERGYLGKNLFGSGFDFDLYVHRGAGAYICGEETALMN 190 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PR+KPPFPA GLYG PTT+NN+ES+A V IL+RGA W++ G E ++G K Sbjct: 191 SLEGLRANPRMKPPFPAQSGLYGKPTTINNIESLASVVHILQRGADWFAQMGTERSKGMK 250 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299 LF +SG P E + F ELI GG + + A IPGGSS P LP + Sbjct: 251 LFQVSGPARRPGVYELPLGTPFRELIYDWAGGPT---EPIKAFIPGGSSTPLLPFTDEYL 307 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358 MDY+ L S LGT V+++ S I+ A+W L FY HESCG+CTPCREG +GW+ Sbjct: 308 DLPMDYESLVAAKSALGTGGVVLIPESVCIVDAMWNLIRFYGHESCGKCTPCREGVSGWL 367 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ E+ +G A + ++ + ++ IEGR+ C L DAA WPI+G +++FR Sbjct: 368 PQLFEKFERGQATQEDLKTMEDLLDQIEGRSFCPLADAAVWPIRGALRHFR 418 >gi|145225065|ref|YP_001135743.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum PYR-GCK] gi|145217551|gb|ABP46955.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum PYR-GCK] Length = 438 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 203/405 (50%), Positives = 271/405 (66%), Gaps = 7/405 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72 Q ++ + G + +++ L D +I VK SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 QPWTMDTYIRHGGYQALERALAMSPDDVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + +PHYLV+NADESEPGTCKD +M PH L+EG +IA++AI A+ AFIY+RGE + Sbjct: 76 AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRANHAFIYLRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E YA+G LG + G+D+++ VH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELTVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL++ + GG+R G + L PGGSS P L A + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELLD-YAGGVRAGHE-LKFWTPGGSSTPLLTADHLD-VPLDYEGMAGV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL G Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++D L ++S NI G++ CALGD AA PI +K+FR E + Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL 417 >gi|195149010|ref|XP_002015452.1| GL11014 [Drosophila persimilis] gi|194109299|gb|EDW31342.1| GL11014 [Drosophila persimilis] Length = 445 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 194/420 (46%), Positives = 253/420 (60%), Gaps = 22/420 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W + +LEKG DWI+ + Sbjct: 43 LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W+F+ S + LV+N E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A Sbjct: 88 ----WNFLRSAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG S G DI+V G Y+CGEETAL++ Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK G+PR +PPF G + P V N ESIAV+PTILRRGASW++ GR N GTK Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG VN PCTVEE MS+ +LIEKH GG+RGGWDNLLA+ PGG S P + Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD++ L+ GS LG+ A+IV+++ +D ++ + R FY+ +C QCT CR+G W+ Sbjct: 323 VLMDFECLEAAGSSLGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382 Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +R VKG A EID + K I + IC L L+ NFRP IE+RI Q+ Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442 >gi|320449685|ref|YP_004201781.1| NADH-quinone oxidoreductase subunit F [Thermus scotoductus SA-01] gi|320149854|gb|ADW21232.1| NADH-quinone oxidoreductase, subunit F [Thermus scotoductus SA-01] Length = 437 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 196/421 (46%), Positives = 265/421 (62%), Gaps = 20/421 (4%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 R LY G+ +L + G ++ ++L EK + +I EVK SGLRGRGGAGF Sbjct: 12 RFEKTLYAHVGQEGSWTLDYYLKHGGYETAKRVLKEKTPEEVIEEVKRSGLRGRGGAGFP 71 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK + HYL+ NADESEPG+ KDR IM PH L+EG ++A +AI A Sbjct: 72 TGVKWSFMPK--DGKQHYLICNADESEPGSFKDRYIMEDVPHLLLEGMILAGYAIRATVG 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+ + + L+AA+ E G LG N G+ D+ VH GAGAYICGEETAL+ Sbjct: 130 YIYVRGEYRKAADRLEAAIREARTRGYLGENLFGSGFSFDVHVHRGAGAYICGEETALMN 189 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V IL RGA W++ G E ++G K Sbjct: 190 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPILERGADWFASMGTEQSKGMK 249 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299 L+ ISG V P E M TF ELI GG + + A+IPGGSS P LP ++ Sbjct: 250 LYQISGPVRRPGVYELPMGTTFRELIYDWAGGP---LEPIQALIPGGSSTPPLPFTDEVL 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWM 358 M Y+ L+ GS LGT VI++ ++ A+W ++ FY HESCG+CTPCREG G+M Sbjct: 307 DTPMSYEHLQAQGSMLGTGGVILIPERVSMVDAMWNVTRFYAHESCGKCTPCREGVAGFM 366 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + ++ G ++++++ L + IEGR+ C L DAA WP++G +K+F+ DQ Sbjct: 367 VNLFAKIGSGEGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLKHFK-------DQ 419 Query: 419 Y 419 Y Sbjct: 420 Y 420 >gi|302864906|ref|YP_003833543.1| NADH-quinone oxidoreductase subunit F [Micromonospora aurantiaca ATCC 27029] gi|302567765|gb|ADL43967.1| NADH-quinone oxidoreductase, F subunit [Micromonospora aurantiaca ATCC 27029] Length = 438 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 194/395 (49%), Positives = 253/395 (64%), Gaps = 11/395 (2%) Query: 22 DSMSRGHWDNVD------KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 D+ G ++ +D K L+ D +I +K SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M H+PH+L+EG +IAS+AI A+ A+IY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L++AVDE YA G LG N G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG + P Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIAEPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E SM IT ELIE GG++ G NL PGGSS P L A + +D++G+ GS Sbjct: 263 ECSMGITLRELIEL-AGGMKPG-HNLKFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G + Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L + NI GR+ C LGD A + +K F+ Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFK 414 >gi|154508642|ref|ZP_02044284.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC 17982] gi|153798276|gb|EDN80696.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC 17982] Length = 434 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 206/418 (49%), Positives = 254/418 (60%), Gaps = 12/418 (2%) Query: 8 IFTNLYGLQGKSLSDSM-SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I TN +G + DS SRG + ++K I+ VK SGLRGRGGAGF +G+KW Sbjct: 14 ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+R Sbjct: 74 SFLPP-ADGGPRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AV E +G+LG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT VNNVE+IA V I R W++ G E ++G +FS+SG Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPEWFASMGTEKSKGHGIFSVSG 245 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HVN P E IT ELIE GGIR G L PGGSS P ++ +DY+ Sbjct: 246 HVNNPGQFEAPFGITMRELIEM-AGGIRDG-HKLKFWTPGGSSTPIFTEDELD-TPLDYE 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A+ V D + +++ I R S FY+HESCG+CTPCREGT WM ++M RL Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +G + ++DLL E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420 >gi|258651221|ref|YP_003200377.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita DSM 44233] gi|258554446|gb|ACV77388.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita DSM 44233] Length = 439 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 193/377 (51%), Positives = 250/377 (66%), Gaps = 5/377 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I VK SGLRGRGGAGF TG+KWSF+PK S +PHYLV+NADE EPGTCKD +M Sbjct: 50 DRLIELVKNSGLRGRGGAGFPTGLKWSFLPKGGS-KPHYLVINADEGEPGTCKDIPLMMA 108 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH+LIEGC+I S+AI A IY+RGE + + AAV E A+G LG + GYD+ Sbjct: 109 DPHSLIEGCIITSYAIRAPFCAIYIRGEAVHAIRRVAAAVREAKAAGFLGRDILGSGYDL 168 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I+VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY PT VNNVE+IA VP Sbjct: 169 EIVVHGGAGAYICGEETALLDSLEGRRGQPRLKPPFPAVEGLYASPTVVNNVETIASVPI 228 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ G+ WY G E + G K++S+SGHV P E M T +L+ GG+R G Sbjct: 229 IVMGGSDWYRSLGTEKSPGPKIYSLSGHVTRPGQYEAPMGTTLRQLLAS-AGGMRDGIP- 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L PGGSS P + + +D + GS LGT A++ + + + A+W+ F Sbjct: 287 LKFFTPGGSSTPIFTPEHLD-VPLSFDDVAAAGSMLGTTALMCFNETVSVPWAVWKWLEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 YKHESCG+CTPCREGTGW+++++ R+V G ++D + + + NI GR+ CALGDAAA Sbjct: 346 YKHESCGKCTPCREGTGWLVQILRRVVTGHGTLEDLDTMVDAAGNIAGRSFCALGDAAAT 405 Query: 400 PIQGLIKNFRPLIEERI 416 PI K FR E+ + Sbjct: 406 PILSSFKYFRSEFEDLV 422 >gi|315501191|ref|YP_004080078.1| NADH-quinone oxidoreductase, f subunit [Micromonospora sp. L5] gi|315407810|gb|ADU05927.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. L5] Length = 438 Score = 365 bits (938), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 194/395 (49%), Positives = 253/395 (64%), Gaps = 11/395 (2%) Query: 22 DSMSRGHWDNVD------KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 D+ G ++ +D K L+ D +I +K SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M H+PH+L+EG +IAS+AI A+ A+IY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L++AVDE YA G LG N G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG + P Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIADPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E SM IT ELIE GG++ G NL PGGSS P L A + +D++G+ GS Sbjct: 263 ECSMGITLRELIEL-AGGMKPG-HNLKFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G + Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L + NI GR+ C LGD A + +K F+ Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFK 414 >gi|324521898|gb|ADY47951.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum] Length = 323 Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 173/269 (64%), Positives = 205/269 (76%), Gaps = 1/269 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L +++RG W +I+ KG+DWII E+ ASGLRGRGGAGF Sbjct: 46 LSDDDRIFTNLYGRHDYRLKGALARGDWYKTKEIILKGQDWIIKEISASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM + RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 106 SGMKWGFMKRPYDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGEF E LQ A+ E Y +G LG + GY D+ VH GAGAYICGEETALLE Sbjct: 166 YIYARGEFYNEACILQEAIHEAYKAGYLGKDCCGTGYSFDVFVHRGAGAYICGEETALLE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGAWFASFGRERNHGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269 LF ISGHV PCTVEE MSI +LIE+H Sbjct: 286 LFCISGHVVNPCTVEEEMSIPLKDLIERH 314 >gi|162452499|ref|YP_001614866.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161163081|emb|CAN94386.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 450 Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 196/446 (43%), Positives = 263/446 (58%), Gaps = 25/446 (5%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML + N G L+ G + + L R+ ++ E+KA+ +RGRGGAGF Sbjct: 1 MLRLTRYLTKNYDTPDGHKLAVYEKGGGYQQAKRALGMTREALVEEMKAANIRGRGGAGF 60 Query: 61 STGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + G+KWSFMP +RPHYLV+NADE EPGT KDR +M PH ++EGC+I F IGAH Sbjct: 61 AMGVKWSFMPWPPKPERPHYLVINADEGEPGTFKDRTLMEKNPHAVVEGCIIGCFGIGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IYVR E + L A++E A G LG + Y V++ VH GAGAYICGEET+L Sbjct: 121 AAYIYVRDELHLSKARLWGAIEEARAKGYLGKRPFGIDYPVEVYVHTGAGAYICGEETSL 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR- 237 L SLEGK+G+PRLKPPFPA G +G PTTVNN+E+IA VPT L G +S ++ Sbjct: 181 LNSLEGKRGEPRLKPPFPAQFGAFGMPTTVNNLETIAAVPTALELGGENFSKLSSLHHLK 240 Query: 238 --GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 G +LF +SGHVN P E ++ +T +LI ++ GG++ G LL VIPGGSS P L A Sbjct: 241 DGGCRLFGVSGHVNNPGIFEAAVGVTLRDLIYEYGGGVKHG--KLLGVIPGGSSCPILRA 298 Query: 296 GQMRGAIMD------------------YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 ++ A D D + +G+ LGT IV+ + A+ L Sbjct: 299 DEVVNAPSDKSPLHPWHGQSVLDVPLGVDTFRALGTMLGTCCAIVLSDKACPVLAMHNLM 358 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 FY+HESCGQCTPCREG+ W+ R+++R+V G E+D L+E++ NI G TICA G+ Sbjct: 359 RFYRHESCGQCTPCREGSAWIHRILDRIVHGEGTIEELDRLHEIADNIMGNTICAFGEGT 418 Query: 398 AWPIQGLIKNFRPLIEERIDQYHRCN 423 A P G ++ FR E I R + Sbjct: 419 AMPALGFLRKFRKEFEAYIQTKGRSS 444 >gi|297159513|gb|ADI09225.1| NADH dehydrogenase I chain F [Streptomyces bingchenggensis BCW-1] Length = 460 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 197/409 (48%), Positives = 258/409 (63%), Gaps = 12/409 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q ++ + ++ + + L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 28 QSWTMETYLRHDGYEGMRRALAMAPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 86 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH LIEG VIA AI + AFIY+RGE + Sbjct: 87 KPHYLVVNADESEPGTCKDIPLLFANPHALIEGMVIACHAIRSQHAFIYLRGEVVPVLRR 146 Query: 136 LQAAVDECYASGLLGS----NSKLGY----DVDIIVHHGAGAYICGEETALLESLEGKKG 187 L AV E Y +G LG KLG D++I VH GAGAYICGEETALL+SLEG++G Sbjct: 147 LHEAVREAYEAGYLGKADARRQKLGLADLPDLEITVHAGAGAYICGEETALLDSLEGRRG 206 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPRL+PPFPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGH Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPAILTKGNEWFRSMGSEKSPGFTLYSLSGH 266 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E + IT +L++ GGIR G L PGGSS P L + +DY+G Sbjct: 267 VAAPGQYEGPLGITLRQLLDM-SGGIRPG-HRLKFWTPGGSSTPLLTEEHLD-VPLDYEG 323 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEA 383 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G + ++ L +++ NI G++ CALGD AA PI +K F+ E+ I Sbjct: 384 GKGRMEDLAKLADIADNINGKSFCALGDGAASPIFSSLKYFKEEYEQHI 432 >gi|94985021|ref|YP_604385.1| NADH-quinone oxidoreductase, F subunit [Deinococcus geothermalis DSM 11300] gi|94555302|gb|ABF45216.1| NADH dehydrogenase subunit F [Deinococcus geothermalis DSM 11300] Length = 446 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 193/410 (47%), Positives = 257/410 (62%), Gaps = 11/410 (2%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 R LY G+ +L + G + V + D +I EVK SGLRGRGGAGF+T Sbjct: 18 RFAPTLYAHVGQPGSWTLDFYLRHGGYQGVRRAFALRPDAVIEEVKKSGLRGRGGAGFAT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP + + HY++ NADESEPG+ KDR ++ +PH LIEG +I +A+ A + Sbjct: 78 GLKWSFMP-LNDGKQHYIICNADESEPGSFKDRYLLSEDPHQLIEGMLIGGYAMRASVGY 136 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE++ + AA+ E A+GLLG N G+D D+ VH GAGAYICGEETAL+ S Sbjct: 137 IYIRGEYVHAAGRVWAAIREARAAGLLGKNVLGSGFDFDLQVHRGAGAYICGEETALMNS 196 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG + PRLKPPFPA GLYG PTT+NNVE+ IL+ GA W++ G E ++G KL Sbjct: 197 LEGLRANPRLKPPFPAAAGLYGMPTTINNVETFCAATQILKYGADWHARMGTEKSKGMKL 256 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRG 300 F ISG V P E + TF EL+ GG +++ A+IPGGSS P LP + Sbjct: 257 FQISGPVRRPGVYELPLGTTFRELVYDWAGGP---LEDIKAIIPGGSSCPMLPWDDRTLD 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMM 359 MDY+ + GS LGT V ++ ++ I+ W L FY HESCG+CTPCREG +GWM+ Sbjct: 314 TPMDYESVAAAGSMLGTGGVTLIPKADCIVNVTWNLVRFYAHESCGKCTPCREGISGWMV 373 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 R+ E+LV+G Q ++ L+ ++S NI GR+ CAL DA P+ IK FR Sbjct: 374 RMYEKLVRGHGQPGDVQLILDMSDNIGGRSFCALADACLGPVLSSIKLFR 423 >gi|219847961|ref|YP_002462394.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aggregans DSM 9485] gi|219542220|gb|ACL23958.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aggregans DSM 9485] Length = 434 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 193/398 (48%), Positives = 257/398 (64%), Gaps = 9/398 (2%) Query: 26 RGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 G W+ L EK I+ VK SGLRGRGGAGF TGMKWSF+PK P YL+ N Sbjct: 26 HGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGMKWSFLPK--GVYPRYLLCNC 83 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT + I+ PH LIEG +++FAI A+ A+IY+RGEF +L+ A+ + Y Sbjct: 84 DESEPGTFNNHQIIDKNPHQLIEGVALSAFAIEANTAYIYMRGEFAAAARTLERAIAQAY 143 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +G LG N G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA GLYG Sbjct: 144 EAGFLGKNILSTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAGLYG 203 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT +NNVE++A VP I+ +G +WY G E + GTK FS+SGHVN P E + Sbjct: 204 KPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGVPLR 263 Query: 264 ELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ELIE ++ GG++GG + +IPGG+S P L A + +DY+ L GS LG+ AVI Sbjct: 264 ELIESPEYGGGMKGG-RPVKIIIPGGASAPWLTADHLD-VPLDYESLAAAGSMLGSGAVI 321 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDLLYE 380 V++ + +++ F+KHESCG+CTPCREGT W++RV+ R+V +G A +ID L+ Sbjct: 322 VLNDTVSAPHLAYKMDEFFKHESCGKCTPCREGTHWLVRVLHRMVEEGHATAADIDTLHG 381 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + + G C LG++A PI+ ++ F E + Q Sbjct: 382 IYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKQ 419 >gi|254382438|ref|ZP_04997797.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1] gi|194341342|gb|EDX22308.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1] Length = 448 Score = 365 bits (936), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 194/389 (49%), Positives = 253/389 (65%), Gaps = 5/389 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ + HYLVVNADESE Sbjct: 42 YEGLRKALAMTPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKSHYLVVNADESE 100 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG +IA +AI + AFIY+RGE + L AV E Y +G Sbjct: 101 PGTCKDIPLLFANPHSLIEGMIIACYAIRSEHAFIYLRGETVPVLRRLHEAVREAYEAGY 160 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG++ G +DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 161 LGTDILGSGLKLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 220 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 221 VNNVESIASVPAILNRGKDWFKAMGTEKSPGFTLYSLSGHVVGPGQYEAPLGITLRQLLD 280 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 397 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ CALGD AA PI +K FR E+ I Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEQHI 426 >gi|297493964|gb|ADI40704.1| NADH dehydrogenase flavoprotein 1, 51kDa [Cynopterus sphinx] gi|297493966|gb|ADI40705.1| NADH dehydrogenase flavoprotein 1, 51kDa [Rousettus leschenaultii] Length = 275 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 171/260 (65%), Positives = 205/260 (78%), Gaps = 1/260 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVKASGLRGRGGAGF Sbjct: 15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKASGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 75 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVLRGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 254 Query: 241 LFSISGHVNYPCTVEESMSI 260 LF+ISGHVN+PCTVEE MS+ Sbjct: 255 LFNISGHVNHPCTVEEEMSV 274 >gi|227494508|ref|ZP_03924824.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832242|gb|EEH64625.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 444 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 206/425 (48%), Positives = 256/425 (60%), Gaps = 19/425 (4%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D DR +T L +RG + ++K L I + VKASGLRGRGGAGF TG Sbjct: 21 DHDRSWT---------LDSYRARGGYRGLEKALTLEPTQITDMVKASGLRGRGGAGFPTG 71 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+P +P YLVVNADESEPGTCKD ++ PH LIEG I + AI AFI Sbjct: 72 LKWSFLPP-DDGKPRYLVVNADESEPGTCKDIPLLMANPHALIEGMAITARAIRCEHAFI 130 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG----YDVDIIVHHGAGAYICGEETALL 179 Y+RGE L AAV E +GL+G LG +++ I H GAGAYICGEETALL Sbjct: 131 YLRGEVAHVYRRLLAAVREAEEAGLIGQG--LGPNGDFNLRITAHAGAGAYICGEETALL 188 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEG++G PRLKPPFPA GLY PT VNNVESI+ VP I W++ G E + G Sbjct: 189 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVESISQVPGIFANPEGWFAAMGTEKSTGH 248 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 FS+SGHVN P E IT ELIE GGIR G L PGGSS P ++ Sbjct: 249 GFFSVSGHVNNPGQFEAPFGITMRELIEM-AGGIRDG-HQLKFWTPGGSSTPIFTEAELD 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + GS L T A+ V D +T +++ I R + FY+HESCG+CTPCREGT WM Sbjct: 307 -VPLDYESVGAAGSMLATRALQVFDETTSVVRVITRWTEFYQHESCGKCTPCREGTYWMK 365 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M RL G + +IDLL E++ NI G++ CALGDAAA P++ I FR E + Sbjct: 366 QIMLRLEAGRGKPGDIDLLDEIAGNIAGKSFCALGDAAATPVRSGIAKFREEFEAGLTTP 425 Query: 420 HRCNF 424 R F Sbjct: 426 ARELF 430 >gi|195402651|ref|XP_002059918.1| GJ15106 [Drosophila virilis] gi|194140784|gb|EDW57255.1| GJ15106 [Drosophila virilis] Length = 501 Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 201/419 (47%), Positives = 264/419 (63%), Gaps = 3/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 LTD DRIF NLYG L + +RG W +LE G WI++EVK SGLRGRGG+G+ Sbjct: 78 LTDCDRIFQNLYGRLDWRLKGACARGDWYRTADLLEMGPQWIMDEVKRSGLRGRGGSGYY 137 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G KW + KV S + L++N E EPGTCKDR+I+RHEPH +IEGC++A FA+G Sbjct: 138 AGSKWEQLQKVES-KDKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGFAMGCEKC 196 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GL+G NS G +I V G Y+ GEETAL+ Sbjct: 197 IIYVRNRFYNEACNLQFALAEAYRYGLIGCNSCDTGIKFEIHVQRG-DRYLTGEETALVN 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PP+ G + P+TV N ES+AVVPTILRRGA W++ GR N GTK Sbjct: 256 CLMGKLARPRKRPPYLHEKGYFDHPSTVINTESLAVVPTILRRGAKWFTSLGRNMNFGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV +PCTVEE MS+ ++IE H GG+ GGW+NLLAV PGG S P + Sbjct: 316 LFNISGHVLHPCTVEEEMSMPLRDIIEMHAGGVCGGWNNLLAVWPGGLSTPLIGRAAAEE 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L+ GS LGT +IV+ D + + FY ++C QCTPCR+G W+ Sbjct: 376 VLMDYDALEAKGSELGTGGIIVVCNDCDPLLVMQHTIEFYMKQTCKQCTPCRDGAIWLPE 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + + +G + ++ + +SK + G TICAL D+ A +GLI++F P IEERI +Y Sbjct: 436 IFKNFTRGESVPHMMEFIEVISKTMTGTTICALSDSQANVARGLIQHFGPYIEERIIEY 494 >gi|145596571|ref|YP_001160868.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica CNB-440] gi|145305908|gb|ABP56490.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica CNB-440] Length = 443 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 191/381 (50%), Positives = 246/381 (64%), Gaps = 8/381 (2%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK----VCSDRPHYLVVNADESEP 89 K ++ D +I VK SGLRGRGGAGF TG+KW F+P+ RPHYLVVNADE EP Sbjct: 42 KAMQAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDGKAPTRPHYLVVNADEGEP 101 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GTCKD +M H+PH+LIEG +IAS+AI A+ A+IY+RGE + L+ AV E YA L Sbjct: 102 GTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVHAARRLRHAVQEAYARNYL 161 Query: 150 GSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 G N G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA GLY PT V Sbjct: 162 GKNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVV 221 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 NNV +IA VP ++ GA+W+ G E + G ++S+SG V P E SM +T ELIE Sbjct: 222 NNVGTIASVPYLVLGGAAWWRTMGTEKSSGPMIYSLSGRVVNPGQYECSMGVTLRELIEL 281 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 GG+R G +L PGGSS P L A + +D++G+ GS LGT A + Sbjct: 282 -AGGMRPG-HSLRFWTPGGSSTPLLTADHL-DVPLDFEGVAAAGSILGTTATQIFSDQDC 338 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + A +R FY HESCG+CTPCREG WM+RV R++ G + ++D L + NI GR Sbjct: 339 PVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQGTQEDLDTLLDTCDNILGR 398 Query: 389 TICALGDAAAWPIQGLIKNFR 409 + C LGD A P+ +K F+ Sbjct: 399 SFCGLGDGATSPVTSSLKYFK 419 >gi|322436008|ref|YP_004218220.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9] gi|321163735|gb|ADW69440.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9] Length = 442 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 194/418 (46%), Positives = 261/418 (62%), Gaps = 7/418 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD---WIINEVKASGLRGRGGAGF 60 D+ + +G ++ + + V + +G + WIIN +KASGLRGRGGAGF Sbjct: 9 DEAIVLKRRFGQGAANIDKYLELDGYKAVQMAIAQGPEMPTWIINVMKASGLRGRGGAGF 68 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF+PKV S++P Y++VN DESEPGTCKD I +PH +IEG +IA AIG+ Sbjct: 69 PTGLKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLEDPHAVIEGTMIAGLAIGSKL 127 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGE+ + ++ AV E YA G LG N G D DII GAGAY GEE+AL+ Sbjct: 128 GFIYLRGEYRYLLKIVEKAVAEAYAKGFLGKNIFGSGIDFDIITQTGAGAYEVGEESALM 187 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPPFPA VGLYG PT +NN E+IA P IL G Y+ G E N GT Sbjct: 188 ESLEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIASAPHILLMGGEAYAKLGSERNGGT 247 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +LF ISGHV P E M + I + G G L AV+PGGSS P L A ++ Sbjct: 248 RLFGISGHVERPGVYELPMGYNLKKAIYEVA-GGVKGGKKLKAVVPGGSSCPVLTADELD 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D + + G+ LG+ ++V+D + I++ R+ FY+HESCG C PCREGT W+ Sbjct: 307 VG-LDFDQMGKAGTMLGSGGIVVLDETVSIVEFALRVISFYQHESCGWCIPCREGTDWIK 365 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + + R+ G K+++D + +++N+ GRT C LGDAAA P G +K FR E+ ID Sbjct: 366 KTLARVYAGGGSKKDVDNVQYLAENMMGRTFCPLGDAAAMPTLGFVKKFRKEFEDYID 423 >gi|150375769|ref|YP_001312365.1| NADH-quinone oxidoreductase subunit F [Sinorhizobium medicae WSM419] gi|150030316|gb|ABR62432.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae WSM419] Length = 421 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 193/412 (46%), Positives = 262/412 (63%), Gaps = 8/412 (1%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS G + + K L E D I+ VK S LRGRGGAGF TGMKWSF+PK + Sbjct: 15 GHLLSTYQVGGGYQALTKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKWSFVPKA-AG 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+RGE++ Sbjct: 74 KPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRR 133 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKP 193 ++ A+ + + +G LG+ LG + +VH GAGAYICGEETA+LESLEGK+ QPRLKP Sbjct: 134 MEQAIAQAHENGYLGTGI-LGSNFKFMVHIHRGAGAYICGEETAMLESLEGKRAQPRLKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ +SG V P Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYCVSGQVRKPGL 252 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M I+ EL+E++ GG G + AVIPGG S P +P + MD+D L GS Sbjct: 253 YELPMGISLRELVEEYAGGPLPG-RKVKAVIPGGVSAPVIPESDLEVG-MDFDSLAAAGS 310 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ R+ G + Sbjct: 311 MLGSAGVVVIDDSTCMVKIATRIIEFFHHESCGKCTPCREGLNWTVKVLRRIEAGEGETG 370 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +++ L + K I G T CALGD AA ++ +K+FR I++ RC F Sbjct: 371 DLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRCPFH 421 >gi|269218342|ref|ZP_06162196.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212201|gb|EEZ78541.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 442 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 190/389 (48%), Positives = 248/389 (63%), Gaps = 6/389 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G ++ + K G + +K SGL GRGGAGF TG+KWSF+P P YLVVNADE Sbjct: 33 GGYEGLAKAWSYGPGELTQLIKDSGLAGRGGAGFPTGLKWSFLPP-PDGGPRYLVVNADE 91 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGTCKD + PH LIEG I A+G H F+Y+RGE + L AAV + + Sbjct: 92 SEPGTCKDVPALMGNPHALIEGMAICLLAVGGHHGFVYLRGEVVHVYRRLMAAVRQAREA 151 Query: 147 GLLGS--NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GL+G YD++I VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA GLY Sbjct: 152 GLIGKAMGPDGDYDIEITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAAEGLYAR 211 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+I+ VP I+R G W+ G E+ +G FS+SGHV P E + IT Sbjct: 212 PTVINNVETISSVPGIVRNGVEWFHAMGTESAKGHGFFSLSGHVKNPGQYEAPLGITART 271 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L++ GGIR G + + GGSS P Q+ +DY+ ++E GS L T A++V D Sbjct: 272 LLDL-AGGIRPGHELKFWAV-GGSSAPLFTPEQLD-VPLDYNSVREAGSMLATRAIMVFD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 + +++ I R + FY+HESCG+CTPCREGT WM +V+ RL G + ++DLLYE++ N Sbjct: 329 ETVSVVRVISRWTDFYQHESCGKCTPCREGTYWMRQVVHRLEAGRGRPGDVDLLYEIASN 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CALGDAAA P++ I+ FR E Sbjct: 389 IAGRSFCALGDAAATPVKSGIELFREEFE 417 >gi|297493962|gb|ADI40703.1| NADH dehydrogenase flavoprotein 1, 51kDa [Miniopterus schreibersii] Length = 275 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 169/260 (65%), Positives = 205/260 (78%), Gaps = 1/260 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 75 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVLRGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++GFGRE N GTK Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFAGFGRERNSGTK 254 Query: 241 LFSISGHVNYPCTVEESMSI 260 LF+ISGHVN+PCTVEE MS+ Sbjct: 255 LFNISGHVNHPCTVEEEMSV 274 >gi|198455798|ref|XP_001360108.2| GA20825 [Drosophila pseudoobscura pseudoobscura] gi|198135400|gb|EAL24682.2| GA20825 [Drosophila pseudoobscura pseudoobscura] Length = 445 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 193/420 (45%), Positives = 252/420 (60%), Gaps = 22/420 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W + +LEKG DWI+ + Sbjct: 43 LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W+F+ S + LV+N E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A Sbjct: 88 ----WNFLRCAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG S G DI+V G Y+CGEETAL++ Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK G+PR +PPF G + P V N ESIAV+PTILRRGASW++ GR N GTK Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG VN PCTVEE MS+ +LIEKH GG+RGGWDNLLA+ PGG S P + Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD++ L+ GS G+ A+IV+++ +D ++ + R FY+ +C QCT CR+G W+ Sbjct: 323 VLMDFECLEAAGSSFGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382 Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +R VKG A EID + K I + IC L L+ NFRP IE+RI Q+ Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442 >gi|297625185|ref|YP_003706619.1| NADH-quinone oxidoreductase subunit F [Truepera radiovictrix DSM 17093] gi|297166365|gb|ADI16076.1| NADH-quinone oxidoreductase, F subunit [Truepera radiovictrix DSM 17093] Length = 447 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 186/370 (50%), Positives = 246/370 (66%), Gaps = 7/370 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 + +EVK SGLRGRGGAGF TG+KWSFMP V R ++V NADESEPG+ KDR IM +P Sbjct: 59 VTDEVKRSGLRGRGGAGFPTGVKWSFMPPV-DGRQRFIVCNADESEPGSFKDRYIMEDDP 117 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG IA +AIGA +Y+RGE+ R E L+ A+ E A GLLG + G+D D+ Sbjct: 118 HQLLEGMAIAGYAIGATKGVLYIRGEYYRAYERLREAIAEARAEGLLGRDLFGSGFDFDV 177 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 I+H GAGAYICGEETAL+ S EG + PRLKPPFPA G+YG PTT+NNVES+A V I+ Sbjct: 178 ILHRGAGAYICGEETALMNSFEGLRANPRLKPPFPAQAGVYGLPTTINNVESLASVVHII 237 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 RGA W++ G E+++GTKL+ +SG P E M TF ELI GG+ + + Sbjct: 238 SRGADWFAAMGTEDSKGTKLYQLSGPAVRPGVYELPMGATFRELIFDLGGGVT---EPVK 294 Query: 282 AVIPGGSSVPCLP-AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 A+IPGGSS P LP + MDY + + GS LGT VI++ R I+ A W L FY Sbjct: 295 ALIPGGSSTPMLPFTDDVLDTPMDYGAIVKKGSMLGTGGVILIPRDKCIVNATWNLVRFY 354 Query: 341 KHESCGQCTPCREG-TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 HESCG+CTPCREG +GWM ++ ++LV G+ + +++L+ +++NI+G+ C L DA Sbjct: 355 AHESCGKCTPCREGISGWMTKMYQKLVAGLGEAGDLELIEMMAENIKGKAFCPLADACLG 414 Query: 400 PIQGLIKNFR 409 P+ I +FR Sbjct: 415 PVLSSIAHFR 424 >gi|54024631|ref|YP_118873.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM 10152] gi|54016139|dbj|BAD57509.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM 10152] Length = 441 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 193/374 (51%), Positives = 258/374 (68%), Gaps = 8/374 (2%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC----SDRPHYLVVNADESEPGTCKDRD 96 D +I VK +GLRGRGGAGF TGMKW F+P+ + +PHYLVVNADESEPGTCKD Sbjct: 41 DQVIQTVKDAGLRGRGGAGFPTGMKWGFIPQGPGPDGTVKPHYLVVNADESEPGTCKDIP 100 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKL 155 ++ PH L+EG +IAS+AI A+ AFIY+RGE + L+AAVD+ YA+GLLG + Sbjct: 101 LLMATPHALVEGAIIASYAIRANTAFIYLRGEVVPVLRRLRAAVDQAYAAGLLGRDILGS 160 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT VNNVESIA Sbjct: 161 GFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIA 220 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 VP ILR G W+ G E + G ++S+SGHV P E + IT EL++ + G+R Sbjct: 221 SVPPILRYGTDWFRSMGSEKSPGFTIYSLSGHVTRPGQYEAPLGITLRELLD-YADGVRA 279 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G L PGGSS P + +DY+G+ GS LGT A+ + D +T +++A+ R Sbjct: 280 G-HRLKFWTPGGSSTPLF-TDEHLDVPLDYEGVAAAGSMLGTKALQIFDETTCVVRAVLR 337 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 + FY HESCG+CTPCREGT W+++++ R+ G + ++D L +++ +I G++ CALGD Sbjct: 338 WTEFYAHESCGKCTPCREGTYWLVQLLRRIETGGGTEADLDTLLDITDSINGKSFCALGD 397 Query: 396 AAAWPIQGLIKNFR 409 AA PI +K FR Sbjct: 398 GAASPIVSSVKYFR 411 >gi|227822748|ref|YP_002826720.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234] gi|227341749|gb|ACP25967.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234] Length = 420 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 197/421 (46%), Positives = 261/421 (61%), Gaps = 9/421 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ G L+ + G + + K+L E D ++ VK S LRGRGGAGF TGMKW Sbjct: 6 LLKNIDAPDGHVLATYEAGGGYQALAKVLREHTPDEVVELVKQSNLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+PK SD+P YL NADE EPGT KDR IM +PH L+EG ++++AIGA A++YVR Sbjct: 66 GFVPKQ-SDKPKYLCCNADEGEPGTFKDRIIMERDPHQLVEGLAVSAYAIGAETAYVYVR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEG 184 GE+++ L+ A+ E G LG+ LG D I +H GAGAYICGEETA+LESLEG Sbjct: 125 GEYVKAIRRLEQAIAEARDKGYLGAGI-LGSDFSFAIHIHCGAGAYICGEETAMLESLEG 183 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG W+ G + + G KL+ + Sbjct: 184 KRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGPHWFRAIGPDKSPGPKLYCV 243 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E M I EL+E H GG G + AVIPGG S P +P G + MD Sbjct: 244 SGQVRKPGLYELPMGIPLRELVE-HAGGPLPG-RRIKAVIPGGVSAPVIPKGGLDVG-MD 300 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ R Sbjct: 301 FDSLAAAGSMLGSAGVIVVDDSTCMVKVAARIVEFFHHESCGKCTPCREGLNWAVKVLRR 360 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G +++ L ++ K I G T CALGD AA ++ + +FR I++ RC F Sbjct: 361 IEAGEGAPGDLEQLEKLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFAAHIEE-RRCPF 419 Query: 425 Q 425 Sbjct: 420 H 420 >gi|171914655|ref|ZP_02930125.1| NADH-quinone oxidoreductase, F subunit [Verrucomicrobium spinosum DSM 4136] Length = 463 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 199/405 (49%), Positives = 255/405 (62%), Gaps = 16/405 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ ++ G ++ + K + R II+EVK SGLRGRGGAGF TG+KW F+P + +P Sbjct: 33 SIESFVANGGYEMLKKAVGMERQAIIDEVKKSGLRGRGGAGFPTGVKWGFIPPT-NTKPV 91 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADESEPGT KDR I+ +PH LIEG VIA FA+ A A+IYVR EF L+ Sbjct: 92 YLICNADESEPGTFKDRYILHQDPHQLIEGMVIACFAVKATLAYIYVREEFPEAAIILEK 151 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196 A+ E A+ LG N GYD+DI VH GAGAYICGEET L+ESLEGK+ PR+KPP FP Sbjct: 152 ALAEARANNFLGKNILGTGYDLDIFVHRGAGAYICGEETGLIESLEGKRPYPRIKPPYFP 211 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A +GLY CPT VNNVES+ V IL G Y+ G NN GT++ +SG V P E Sbjct: 212 AALGLYMCPTIVNNVESLCHVKHILEMGGEEYAKLGTPNNTGTRILCVSGDVQKPGYFEV 271 Query: 257 SM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAI---MD 304 + +T E+I CGG++ G L A+IPGGSS L A G+ G + MD Sbjct: 272 QVGKVTMGEVINDLCGGLKPG-RKLKAIIPGGSSAKVLRADEVFKLRDGRELGIMDIPMD 330 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D + GS G+ VI+MD S + I L+ FY HESCGQCTPCREG+ WM ++ +R Sbjct: 331 FDTMAACGSMAGSGGVIIMDDSRSMTWVINNLNNFYAHESCGQCTPCREGSLWMKKISDR 390 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +V G A ++ L V+ NIEG+TICA G+A +WP Q +K FR Sbjct: 391 IVAGEASPSDVAELERVANNIEGKTICAFGEACSWPTQSFVKKFR 435 >gi|294056100|ref|YP_003549758.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita akajimensis DSM 45221] gi|293615433|gb|ADE55588.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita akajimensis DSM 45221] Length = 454 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 198/417 (47%), Positives = 264/417 (63%), Gaps = 21/417 (5%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + G ++++ K + + I EV SG+RGRGGAGF GMKW F+ + S +P YLV N Sbjct: 26 IKHGGYEDLKKAITMKPEDICQEVMESGVRGRGGAGFPAGMKWKFLDRK-SGKPIYLVCN 84 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 DESEPGT KDR I+ +PH LIEG +I+++AI A AFIY+RGEF + L+ A++E Sbjct: 85 CDESEPGTFKDRQIVHKDPHQLIEGMMISAYAIQAKLAFIYIRGEFFQGYRILEQAIEEA 144 Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201 A LLG N GY DIIVH GAGAYICGEET L+ES+EG + PR+KPP FPA +GL Sbjct: 145 RAKNLLGDNILGSGYSCDIIVHRGAGAYICGEETGLIESIEGNRANPRIKPPYFPAALGL 204 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-I 260 Y CPT VNNVE++ V I+ G ++ G N GT+ + +SGHV P E + + I Sbjct: 205 YQCPTIVNNVETLCDVKHIVAMGGKGFADIGTPGNTGTRTWCVSGHVMKPGYYEFACADI 264 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRGAI--------------MDY 305 T ELI CGG++ G L AVIPGGSS L A + +G + MD+ Sbjct: 265 TLGELIYDVCGGLKPG-RKLKAVIPGGSSAKVLRADERFKGKLKDGTEFDWGIEDIPMDF 323 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L GS G+ VIVMD STDI++A+ ++ FY HESCGQCTPCREG W+ +V +R+ Sbjct: 324 DSLMACGSMSGSGGVIVMDDSTDIVEALANINYFYAHESCGQCTPCREGVPWLRKVTQRM 383 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQYHR 421 V G A++ + DLL ++ I GRTICA G+AA+WP+Q I+ F+ +E+ +Q R Sbjct: 384 VDGEAREEDADLLKSIADQIAGRTICAFGEAASWPVQSFIEKFKDEFVEKAREQAAR 440 >gi|218295765|ref|ZP_03496561.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23] gi|218243924|gb|EED10451.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23] Length = 437 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 200/421 (47%), Positives = 270/421 (64%), Gaps = 20/421 (4%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 R LY GK +L +++G ++ K+L EK + +I EVK SGLRGRGGAGF Sbjct: 12 RFERTLYAHVGKEGSWTLDFYLAQGGYETAKKVLKEKTPEEVIEEVKRSGLRGRGGAGFP 71 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A Sbjct: 72 TGVKWSFMPK--DGQQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+ R + L+AA+ E A G LG N G+ D+ VH GAGAYICGEETAL+ Sbjct: 130 YIYVRGEYRRAADRLEAAIAEARARGYLGQNLFGTGFSFDLHVHRGAGAYICGEETALMN 189 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V IL RGA W++ G E ++G K Sbjct: 190 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLAAVVPILERGADWFAQMGTEGSKGMK 249 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299 L+ +SG V P E M TF ELI + GG + + A+IPGGSS P LP + ++ Sbjct: 250 LYQVSGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQALIPGGSSTPPLPFSEEVL 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWM 358 M Y+ L+ GS LGT VI++ ++ A+W L+ FY HESCG+CTPCREG G+M Sbjct: 307 DTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFM 366 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + ++ G ++++++ L + IEGR+ C L DAA WP++G +K+F+ DQ Sbjct: 367 VNLFAKIGTGEGEEKDVETLEALLPLIEGRSFCPLADAAVWPVKGSLKHFK-------DQ 419 Query: 419 Y 419 Y Sbjct: 420 Y 420 >gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] Length = 655 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 194/400 (48%), Positives = 258/400 (64%), Gaps = 16/400 (4%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 ++ G + +++ L+ + I++EVK SGLRGRGGAGF G+KW F+ K +P YL+ N Sbjct: 210 LNDGGYKQLEQALKMKPEEIVDEVKKSGLRGRGGAGFPCGVKWGFI-KRGGPKPTYLICN 268 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR I+ +PH LIEG VI+ FA+GA+ A+IY+RGEF + L+ A+ E Sbjct: 269 ADESEPGTFKDRYIIHQDPHQLIEGMVISCFAVGANLAYIYIRGEFPEGAQILEKALAEA 328 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201 A LG N G+D +I VH GAGAYICGEET L+ESLEGK+ PR+KPP FPA +GL Sbjct: 329 RAKNFLGKNILGSGFDCEIYVHRGAGAYICGEETGLIESLEGKRAYPRIKPPYFPAVLGL 388 Query: 202 YGCPTTVNNVESIAVVPTILRRGA-SWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMS 259 Y CPT VNNVE++ V IL G + Y+ G+ NN GT++ +SG V P E E S Sbjct: 389 YQCPTIVNNVETLCDVKHILAMGGGAGYAKLGKPNNTGTRILCVSGDVKKPGYYEVEVGS 448 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ----------MRGAIMDYDGLK 309 +T ELI CGG+R G L AVIPGGSS L AG+ + MD+D L Sbjct: 449 LTMGELINDVCGGLRDG-RTLKAVIPGGSSAKVLKAGEKYKLKDKEITLEEIPMDFDTLA 507 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 GS G+ VIVMD S D+++ + ++ FY HESCGQCTPCREG WM ++ +R+++G Sbjct: 508 AAGSMAGSGGVIVMDDSRDMVETLNNINEFYAHESCGQCTPCREGALWMKKITDRIIEGG 567 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ D+L V+ NI G+TICA G+A +WP Q + FR Sbjct: 568 GTAKDPDVLKNVADNIAGKTICAFGEACSWPTQSFVLKFR 607 >gi|327403949|ref|YP_004344787.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823] gi|327319457|gb|AEA43949.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823] Length = 447 Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 205/424 (48%), Positives = 271/424 (63%), Gaps = 19/424 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S G + +V+K L+ ++ EV+ASGLRGRGGAGF TGMKWSF+ K Sbjct: 16 ESFEVYRKNGGYRSVEKALKTMSPQNVVEEVQASGLRGRGGAGFPTGMKWSFLAKP-EGV 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL+ NADESEPGT KDR +M PH L+EG +++S+A+G + ++IY+RGE++ E + Sbjct: 75 PRYLLCNADESEPGTFKDRYLMEKIPHLLVEGMIVSSYALGCNQSYIYIRGEYMWVLEIV 134 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ E YA+G LG N GYD+D+ + G GAYICGEETAL+ESLEGK+G PR+KPPF Sbjct: 135 EKAIAEAYANGFLGKNILGSGYDLDLAIAPGGGAYICGEETALIESLEGKRGNPRIKPPF 194 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+GCPT VNNVESIA V I+ G + Y+ G + GTKL S G++ P E Sbjct: 195 PAVKGLWGCPTVVNNVESIAAVVPIVNDGGAEYAKIGIGKSTGTKLISACGNLVKPGVYE 254 Query: 256 ESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDG 307 + +T +E I ++ CGGI G + A +PGGSSVP LPA + +M Y+G Sbjct: 255 IELGMTVEEFIYSDEWCGGIANG-KKIKACVPGGSSVPILPANLITKTAEGVDRLMSYEG 313 Query: 308 LKE----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 L E GS LG+ IV D I++ W + FY HESCGQC+PCREGTGWM +V+ Sbjct: 314 LAEGGFATGSMLGSGGFIVFDEDQCIVRNTWNFARFYAHESCGQCSPCREGTGWMEKVLR 373 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI---DQYH 420 RL G +IDLL E++K IEG TIC LGDAAAWP+ I++FR E + D+ Sbjct: 374 RLENGQGHMHDIDLLAEINKKIEGNTICPLGDAAAWPVAAAIRHFREEFEWHVTHPDEAV 433 Query: 421 RCNF 424 + NF Sbjct: 434 KRNF 437 >gi|226306209|ref|YP_002766169.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4] gi|226185326|dbj|BAH33430.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4] Length = 439 Score = 362 bits (929), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 205/407 (50%), Positives = 267/407 (65%), Gaps = 12/407 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 +L + R + + K L D +I VK +GLRGRGGAGF TG+KWSF+P+V D+P Sbjct: 18 TLDSYLRRDGYQALRKALATPPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQVSEDKPG 77 Query: 78 ----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 HYLVVNADESEPGTCKD +M PHTL+EG +IA++AI A AFIYVRGE + Sbjct: 78 DGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVVPVL 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 LQ AV E YA+G LG N G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+ Sbjct: 138 RRLQTAVAEAYAAGYLGRNVLGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLR 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLY CPT VNNVESIA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 198 PPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVTTPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT EL+E + GG+R G L PGGSS P + +DY+G+ G Sbjct: 258 QYEAELGITLRELLE-YAGGVRAG-HTLKFWTPGGSSTPIF-TDEHLDVPLDYEGVGAAG 314 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL G + Sbjct: 315 SMLGTKALQIFDETTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGTGTE 374 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ L ++S I G++ CALGD A PI +K FR EE + + Sbjct: 375 ADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFR---EEYVAHF 418 >gi|15806512|ref|NP_295223.1| NADH dehydrogenase I subunit F [Deinococcus radiodurans R1] gi|6459262|gb|AAF11067.1|AE001994_3 NADH dehydrogenase I, F subunit [Deinococcus radiodurans R1] Length = 444 Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 194/410 (47%), Positives = 255/410 (62%), Gaps = 11/410 (2%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 R LY G+ S D+ RG + V + G D +I EVK SGLRGRGGAGF+T Sbjct: 17 RFAPTLYAQVGQPRSWTLDTYQRGGGYQGVRRAFALGPDAVIEEVKKSGLRGRGGAGFAT 76 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP + +PH ++ NADESEPGT KDR +M +PH LIEG +I +A+ A + Sbjct: 77 GLKWSFMP-LNDGKPHLIICNADESEPGTFKDRYLMSEDPHQLIEGMLIGGYAMRASRGY 135 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE++ E L AA+ E A+GLLG + G+D D+ VH GAGAYICGEETAL+ S Sbjct: 136 IYIRGEYVLAAERLWAAIHEARAAGLLGKDILGSGFDFDLQVHRGAGAYICGEETALMNS 195 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG + PRLKPPFPA GLYG PTT+NNVE+ IL+ GA W++G G E ++G KL Sbjct: 196 LEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATHILKYGADWHAGMGTEKSKGMKL 255 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRG 300 F ISG V P E + F ELI GG +++ A+IPGG S L + + Sbjct: 256 FQISGPVARPGVYELPLGTPFRELIYDWAGGPT---EDIKAIIPGGISCQLLKWSEDILD 312 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMM 359 MDY+ L GS LGT V ++ + I+ W FY HESCG+CTPCREG +GWM+ Sbjct: 313 TPMDYESLAAAGSSLGTGGVTLIPAAASIVDTTWNAVRFYGHESCGKCTPCREGISGWMV 372 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 R+ E+L +G Q + +L+ +++ NI GR+ CAL DA P+ I+ FR Sbjct: 373 RMYEKLARGHGQPGDTNLILDMADNIGGRSFCALADACLGPVLSSIRLFR 422 >gi|222839394|gb|EEE77731.1| predicted protein [Populus trichocarpa] Length = 391 Score = 362 bits (928), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 195/366 (53%), Positives = 247/366 (67%), Gaps = 11/366 (3%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60 +I+ +L G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF Sbjct: 29 QIYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGF 87 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ + H LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G Sbjct: 88 PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISL 146 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 + Y+ GE E +AA++E A+G LG N + + HHG GAYICGEETALL Sbjct: 147 GYNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALL 206 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GT Sbjct: 207 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGT 266 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+SG VN P E + F +L+E GG+R G L AVIPGGSS P LPA + Sbjct: 267 KIFSVSGDVNLPGNYEVPLGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADIIM 324 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ Sbjct: 325 ECTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLW 384 Query: 360 RVMERL 365 RV+ R+ Sbjct: 385 RVVNRI 390 >gi|146299001|ref|YP_001193592.1| NADH-quinone oxidoreductase, F subunit [Flavobacterium johnsoniae UW101] gi|146153419|gb|ABQ04273.1| NADH dehydrogenase subunit F [Flavobacterium johnsoniae UW101] Length = 456 Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 194/406 (47%), Positives = 265/406 (65%), Gaps = 20/406 (4%) Query: 27 GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G + +V+K L+ D + EVK SGLRGRGGAGF GMKWSF+ K S RP +LV NAD Sbjct: 25 GGYASVEKALKTLTPDEVTEEVKKSGLRGRGGAGFPAGMKWSFIDKK-SGRPRHLVCNAD 83 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGT KDR +M + PH LIEG + +S+A+GA+ ++IY+RGE++ + L+ A+ E A Sbjct: 84 ESEPGTFKDRFLMEYIPHLLIEGMITSSYALGANLSYIYIRGEYMWVFKILERAIAEAKA 143 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N GYD+++ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA GL+ Sbjct: 144 AGWLGKNILGSGYDLELHVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWAN 203 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVE+IA VP I+ Y+ G + GTKL S SGH+ P E + ++ DE Sbjct: 204 PTVVNNVETIATVPWIVNNSGDDYAKIGIGRSTGTKLISASGHIKNPGVYEIELGLSVDE 263 Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE---- 310 + +++ GG+ L A +PGGSSVP LPA G+ R +M Y+ L + Sbjct: 264 FMNSDEYLGGMSSS-RPLKAFVPGGSSVPILPAELIFKTANGEDR--LMTYESLSDGGFA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LG+ IV + + +++ W + FY HESCGQCTPCREGTGW+ +++ R+ G Sbjct: 321 TGSMLGSGGFIVYNDTACVVRNTWNFARFYHHESCGQCTPCREGTGWLEKILWRIENGQG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ +I+LL+ + IEG TIC LGDAA+WP+ I++FR E + Sbjct: 381 REEDIELLWSIQSKIEGNTICPLGDAASWPVAAAIRHFRDEFEYHV 426 >gi|297493960|gb|ADI40702.1| NADH dehydrogenase flavoprotein 1, 51kDa [Scotophilus kuhlii] Length = 275 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 168/260 (64%), Positives = 204/260 (78%), Gaps = 1/260 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 75 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++ FGRE N GTK Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFASFGRERNSGTK 254 Query: 241 LFSISGHVNYPCTVEESMSI 260 LF+ISGHVN+PCTVEE MS+ Sbjct: 255 LFNISGHVNHPCTVEEEMSV 274 >gi|227535966|ref|ZP_03966015.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|227244209|gb|EEI94224.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] Length = 450 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 200/405 (49%), Positives = 259/405 (63%), Gaps = 16/405 (3%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ K P YLV N Sbjct: 24 QGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNG 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE + + L+ A+ E Sbjct: 83 DESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEMMPQIRILEKAIAEAK 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +G LG N GYD++I V G GAYICGEETALLESLEGK+G PR+KPPFPA GLYG Sbjct: 143 HAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAVAGLYG 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 CPT VNNVESIA I+ G Y+ G + + GTKL S G+V P E + + + Sbjct: 203 CPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNVAKPGVYEIELGLPVE 262 Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----M 311 E I +++CGGI G L AV+ GGSSVP LPA + I M Y+ L + Sbjct: 263 EFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLITKTINGESRLMSYESLADGGFAT 321 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ LG+ I D I++ W + FY HESCGQC+PCREGTGWM +++ ++ G Sbjct: 322 GTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTGWMEKILHKIEMGKGS 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +IDLL++V + IEG TIC LGDAAAWP+ I++FR E I Sbjct: 382 MADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426 >gi|148656362|ref|YP_001276567.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1] gi|148568472|gb|ABQ90617.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1] Length = 449 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 190/387 (49%), Positives = 249/387 (64%), Gaps = 7/387 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E+ I+ VK SGLRGRGGAGF TG+KW F+PK P YL+ N DESEPGT + Sbjct: 53 VTERTPADIVQTVKDSGLRGRGGAGFPTGVKWGFLPK--GVYPRYLLCNCDESEPGTFNN 110 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 I+ PH LIEG I+++AI AH A+IY+RGEF L+ A+ + Y G LG N Sbjct: 111 HQIIDRNPHQLIEGIAISAYAIEAHTAYIYIRGEFAAAARRLERAIAQAYERGFLGRNIF 170 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 GYD+DI VH GAGAYICGEETAL+ESLEGK GQPRL+PPFPA GLYG PT +NNVE+ Sbjct: 171 GKGYDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLRPPFPAVAGLYGKPTIINNVET 230 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCG 271 + VP I+R GA+WY FG E + GTK+FSISGHV P E I ELI +C Sbjct: 231 LTNVPMIVRHGAAWYRQFGTEKSPGTKVFSISGHVKRPGNYEAPFGIPLRELIFSPDYCQ 290 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R N+ V+PGG+S L A + MDY+ L GS LG+ VIV+D S ++ Sbjct: 291 GMRSD-RNVKIVVPGGASAGWLTADDL-DVTMDYEALAAKGSMLGSGGVIVLDESVSAVE 348 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 +++ F+KHESCG+CTPCREGT ++++V+ R+ G +K +I LL++V + G C Sbjct: 349 VAYKMDEFFKHESCGKCTPCREGTYFLVKVLHRITHGHGRKEDIPLLHDVYHQMAGNCFC 408 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LG++A PI+ ++ F E+ I Q Sbjct: 409 LLGESAVVPIRSALRLFPHEFEQAIAQ 435 >gi|300771672|ref|ZP_07081547.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33861] gi|300761661|gb|EFK58482.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33861] Length = 450 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 200/405 (49%), Positives = 259/405 (63%), Gaps = 16/405 (3%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ K P YLV N Sbjct: 24 QGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNG 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE + + L+ A+ E Sbjct: 83 DESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEMMPQIRILEKAIAEAK 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +G LG N GYD++I V G GAYICGEETALLESLEGK+G PR+KPPFPA GLYG Sbjct: 143 HAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAVAGLYG 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 CPT VNNVESIA I+ G Y+ G + + GTKL S G+V P E + + + Sbjct: 203 CPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNVAKPGVYEIELGLPVE 262 Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----M 311 E I +++CGGI G L AV+ GGSSVP LPA + I M Y+ L + Sbjct: 263 EFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLITKTINGESRLMSYESLADGGFAT 321 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ LG+ I D I++ W + FY HESCGQC+PCREGTGWM +++ ++ G Sbjct: 322 GTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTGWMEKILHKIEIGKGS 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +IDLL++V + IEG TIC LGDAAAWP+ I++FR E I Sbjct: 382 MADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426 >gi|159039970|ref|YP_001539223.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola CNS-205] gi|157918805|gb|ABW00233.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola CNS-205] Length = 443 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 193/381 (50%), Positives = 244/381 (64%), Gaps = 8/381 (2%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV----CSDRPHYLVVNADESEP 89 K L D +I VK SGLRGRGGAGF TG+KW F+P+ RPHYLVVNADE EP Sbjct: 42 KALGAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDGRSPTRPHYLVVNADEGEP 101 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GTCKD +M H+PH+LIEG +IAS+AI A+ A+IY+RGE + L+ AV E YA G L Sbjct: 102 GTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVHAARRLRHAVQEAYARGYL 161 Query: 150 GSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 G N G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA GLY PT V Sbjct: 162 GRNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVV 221 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 NNV +IA VP I+ GA W+ G E + G ++S+SG V P E SM IT ELIE Sbjct: 222 NNVGTIASVPYIVSGGADWWRTMGTEKSSGPMIYSLSGRVVNPGQYECSMGITLRELIEL 281 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 GG++ G +L PGGSS P L A + +D++ + GS LGT A + Sbjct: 282 -AGGMQPG-HSLRFWTPGGSSTPLLTAEHL-DVPLDFEEVAAAGSILGTTATQIFSDQDC 338 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + A +R FY HESCG+CTPCREG WM+RV R++ G + ++D L + NI GR Sbjct: 339 PVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQGTQEDLDTLLDTCDNILGR 398 Query: 389 TICALGDAAAWPIQGLIKNFR 409 + C LGD A P+ +K F+ Sbjct: 399 SFCGLGDGATSPVTSSLKYFK 419 >gi|313206211|ref|YP_004045388.1| NADH dehydrogenase subunit f [Riemerella anatipestifer DSM 15868] gi|312445527|gb|ADQ81882.1| NADH dehydrogenase subunit F [Riemerella anatipestifer DSM 15868] gi|315023104|gb|EFT36117.1| NADH-ubiquinone oxidoreductase chain F [Riemerella anatipestifer RA-YM] gi|325336342|gb|ADZ12616.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Riemerella anatipestifer RA-GD] Length = 453 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 198/401 (49%), Positives = 266/401 (66%), Gaps = 15/401 (3%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + +K L+ + I+ EVK SGLRGRGGAGF TG+KWSF+ K P +LVVNAD Sbjct: 24 QGGYQAAEKALKMNPEEILEEVKTSGLRGRGGAGFPTGLKWSFLAK-PEGVPRHLVVNAD 82 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGT KDR +M PH LIEG +I+S+ +G++ ++IY+RGE+ + L+ A++E Sbjct: 83 ESEPGTFKDRYLMEFIPHLLIEGMLISSYCLGSNASYIYIRGEYSWIPDILEEAIEEAKK 142 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N G+D++I V G GAYICGEETALLESLEG++G PRLKPPFPA GL+ Sbjct: 143 AGFLGKNILGSGFDLEIYVQRGGGAYICGEETALLESLEGRRGNPRLKPPFPAVKGLWER 202 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVESIA V I+ + Y+ G + GTKL S G++N P E M+IT +E Sbjct: 203 PTVVNNVESIAAVVPIINISGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMTITVEE 262 Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----MG 312 I +++CGGI G L A IPGGSSVP +PA + I M+Y+ L E G Sbjct: 263 FIYSDEYCGGIPNG-KRLKACIPGGSSVPIVPANLLLRTIDGKPRYMNYESLSEGGFATG 321 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + +G+ IV+D ++K L+ FY HESCGQCTPCREGTGWM R+++++V+G + Sbjct: 322 TMMGSGGFIVLDEDQSVVKHTMTLARFYNHESCGQCTPCREGTGWMYRILKKIVEGKGEM 381 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E Sbjct: 382 SDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFE 422 >gi|284039947|ref|YP_003389877.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74] gi|283819240|gb|ADB41078.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74] Length = 446 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 205/409 (50%), Positives = 266/409 (65%), Gaps = 20/409 (4%) Query: 26 RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +G + V+K ++ + I+ EVK +G+RGRGGAGF GMKWSF+ K P YLV NA Sbjct: 24 QGGYTAVEKTIKTMTPEAIVEEVKKAGVRGRGGAGFPMGMKWSFLAK-PEGVPRYLVCNA 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KD +M++ PH LIEG +I+SFA+GA+ +FIYVRGE + L+ A+ E Sbjct: 83 DESEPGTFKDHYLMKNIPHLLIEGMIISSFALGANKSFIYVRGELMYVIHILEKAIAEAT 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 A G LG N GYD++++V G GAYICGEETALLESLEGK+G PR KPPFPA GLY Sbjct: 143 AKGFLGKNIMGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPFPAVKGLYQ 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVESIA P I+ G Y+G G + GTKL S SGH+N P E + + + Sbjct: 203 SPTVVNNVESIATTPWIVNNGGDAYAGVGIGRSTGTKLISASGHINKPGVYEIELGVPVE 262 Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310 + I ++ CGGIR G A++ GGSSVP LPA G+ R +M Y+ L + Sbjct: 263 DFIYADEWCGGIRPG-HKFKALVAGGSSVPILPANLALTLANGEKR--LMSYESLSDGGF 319 Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 G+ LG+ IV D ++ I++ W S FY HESCGQC+PCREGTGWM +V+ R+ G Sbjct: 320 ATGTMLGSGGFIVFDETSCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLHRIEHGH 379 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++IDLL +V+K IEG TIC LGDAAAWP+ I++FR + ID Sbjct: 380 GHQQDIDLLVDVAKKIEGNTICPLGDAAAWPVASAIRHFRDEFQWHIDN 428 >gi|315605125|ref|ZP_07880176.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 180 str. F0310] gi|315313161|gb|EFU61227.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 180 str. F0310] Length = 434 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 203/418 (48%), Positives = 254/418 (60%), Gaps = 12/418 (2%) Query: 8 IFTNLYGLQGKSLSDSM-SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I TN +G + DS +RG + ++K I+ VK SGLRGRGGAGF +G+KW Sbjct: 14 IITNGWGEERSWTLDSYRARGGYLGLEKARAMDPADIVAAVKDSGLRGRGGAGFPSGLKW 73 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+R Sbjct: 74 SFLPP-ADGGPRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L +AV E +G+LG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 133 GEVTHVYRRLLSAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT VNNVE+IA V I R W++ G E ++G +FS+SG Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPQWFASMGTEKSKGHGIFSVSG 245 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E IT ELI+ GGIR G L PGGSS P ++ +DY+ Sbjct: 246 HVANPGQFEAPFGITMRELIDM-AGGIRQG-HTLKFWTPGGSSTPIFTQDELD-TPLDYE 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A+ V D + +++ I R S FY+HESCG+CTPCREGT WM ++M RL Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +G + ++DLL E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420 >gi|111022877|ref|YP_705849.1| NADH dehydrogenase subunit F [Rhodococcus jostii RHA1] gi|110822407|gb|ABG97691.1| probable NADH dehydrogenase subunit F [Rhodococcus jostii RHA1] Length = 432 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 201/382 (52%), Positives = 263/382 (68%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I+ VK +GLRGRGGAGF TGMKWSF+P+ +PHYLVVNADESE Sbjct: 28 YEGLQKALRMDPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQ-GDAKPHYLVVNADESE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD +M PH L+EG +IA++AI A AFIYVRGE + LQAAV E YA+G Sbjct: 87 PGTCKDMPLMLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRRLQAAVAEAYAAGY 146 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG+N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY PT Sbjct: 147 LGTNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYASPTV 206 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP I+ G W+ G E + G L+S+SGHV P E + IT EL+E Sbjct: 207 VNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTKPGQYEAPLGITLRELLE 266 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + GG+R G L PGGSS P + A +DY+G+ GS LGT A+ + D +T Sbjct: 267 -YAGGVRAG-HRLKFWTPGGSSTPIFTDEHLDVA-LDYEGVGAAGSMLGTKALQIFDETT 323 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G +++ L +++ NI G Sbjct: 324 CVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDADLEKLLDIADNILG 383 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 ++ CALGD AA PI IK FR Sbjct: 384 KSFCALGDGAASPIMSSIKYFR 405 >gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S] gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S] Length = 688 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 205/390 (52%), Positives = 262/390 (67%), Gaps = 10/390 (2%) Query: 27 GH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD----RPHYL 80 GH + + K L D +I VK +GLRGRGGAGF TGMKWSF+P+ + +PHYL Sbjct: 268 GHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPTGMKWSFIPQDPATDGTAKPHYL 327 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 VVNADESEPGTCKD +M PHTLIEG VIA++AI A AF+YVRGE + LQAAV Sbjct: 328 VVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRAAQAFVYVRGEVVPVLRRLQAAV 387 Query: 141 DECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 E Y +G LG + GYD+DI+VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA Sbjct: 388 AEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVA 447 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GLY PT VNNVESIA VP I+ RG W+ G G E + G L+S+SGHV P E + Sbjct: 448 GLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASPGFTLYSLSGHVTRPGQYEAPLG 507 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 +T +L++ GG+R G L PGGSS P L + +DY+G+ GS LGT A Sbjct: 508 VTLRQLLDV-AGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVAGAGSMLGTKA 564 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 + + D +T I++ + R + FY HESCG+CTPCREGT W+++++ERL +G +++ L Sbjct: 565 LQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYWLVQILERLERGEGSAEDLEKLL 624 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +VS I G++ CALGD AA PI +K FR Sbjct: 625 DVSDTILGKSFCALGDGAASPIMSSLKYFR 654 >gi|187736101|ref|YP_001878213.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835] gi|187426153|gb|ACD05432.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835] Length = 466 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 202/423 (47%), Positives = 266/423 (62%), Gaps = 22/423 (5%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ ++ G ++ + K L +I+EVK SGLRGRGGAGF TG+KW+F+P + +P Sbjct: 31 SIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGFPTGVKWTFIPP-NNTKPV 89 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV N DESEPGT KDR I+ +PH LIEG VI+S+A+GAH A+IY+R EF E + Sbjct: 90 YLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQAYIYMREEFPIAAEIMLK 149 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196 A+ E G LGSN + GY+++I +H GAGAYICGEETALL SLEG + PR+KPP FP Sbjct: 150 ALQEARERGFLGSNIQGSGYNLEIHLHRGAGAYICGEETALLNSLEGDRPYPRIKPPYFP 209 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE- 255 A +GLYGCPT VNNVES+ V I+ G YS G + + GT++ +SG V P E Sbjct: 210 AAIGLYGCPTIVNNVESLCQVKHIMAMGGEAYSQEGAKRSPGTRIIGVSGDVKRPGFYEI 269 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL----------PAGQMRGAI--- 302 S S+TF EL+ CGG R G AVIPGGSS + P G M G I Sbjct: 270 VSGSMTFGELLYDVCGGPRDG-RQFKAVIPGGSSSKVMRTDAEYKVQNPDGTM-GKITFF 327 Query: 303 ---MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D D + GS G+ AVIVMD S + A+ ++ FY HESCGQCTPCREG WMM Sbjct: 328 DIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAHESCGQCTPCREGCPWMM 387 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+++G A ++DLL EV+ IEG+T+CA G+AA+WP Q ++ F+ D + Sbjct: 388 KLSTRILEGKAAPSDVDLLIEVANQIEGKTVCAFGEAASWPTQAMVSKFKEEFVALTDPF 447 Query: 420 HRC 422 + C Sbjct: 448 NAC 450 >gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] Length = 688 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 206/390 (52%), Positives = 262/390 (67%), Gaps = 10/390 (2%) Query: 27 GH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD----RPHYL 80 GH + + K L D +I VK +GLRGRGGAGF TGMKWSF+P+ + +PHYL Sbjct: 268 GHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPTGMKWSFIPQDPATDGTAKPHYL 327 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 VVNADESEPGTCKD +M PHTLIEG VIA++AI A AF+YVRGE + LQAAV Sbjct: 328 VVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRAAQAFVYVRGEVVPVLRRLQAAV 387 Query: 141 DECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 E Y +G LG + GYD+DI+VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA Sbjct: 388 AEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVA 447 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GLY PT VNNVESIA VP I+ RG W+ G G E + G L+S+SGHV P E + Sbjct: 448 GLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASPGFTLYSLSGHVTRPGQYEAPLG 507 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 IT +L++ GG+R G L PGGSS P L + +DY+G+ GS LGT A Sbjct: 508 ITLRQLLDV-AGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVAGAGSMLGTKA 564 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 + + D +T I++ + R + FY HESCG+CTPCREGT W+++++ERL +G +++ L Sbjct: 565 LQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYWLVQILERLERGEGSVEDLEKLL 624 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +VS I G++ CALGD AA PI +K FR Sbjct: 625 DVSDTILGKSFCALGDGAASPIMSSLKYFR 654 >gi|302035987|ref|YP_003796309.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira defluvii] gi|300604051|emb|CBK40383.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira defluvii] Length = 435 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 189/394 (47%), Positives = 256/394 (64%), Gaps = 6/394 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEV-KASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SL++ G + + K+L K + V SGLRGRGGAGF TG+KW F+PK P Sbjct: 20 SLAEYERAGGYQAIRKVLGKVSPADVTAVVMKSGLRGRGGAGFPTGVKWGFLPKDYQG-P 78 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL NADESEPGT KDR ++ +PH L+EG ++A +AIGA ++IY+RGEF+ + L+ Sbjct: 79 RYLCCNADESEPGTFKDRQLIERDPHQLLEGMLLACYAIGAASSYIYIRGEFVLGAKILE 138 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E A+G +G N +DI VH GAGAYICGEETALLESLEGK+G PR+KPPFP Sbjct: 139 QAINEARAAGYVGKNIFGSNTTIDIWVHRGAGAYICGEETALLESLEGKRGLPRVKPPFP 198 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255 A GLY PT VNNVE++A +P IL RGA W++ G + GT++F +SGHV P E Sbjct: 199 ATHGLYNKPTVVNNVETLANLPHILNRGAEWFASIGSPPKSTGTRVFCVSGHVARPGNYE 258 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M ITF ELI + GG+R L A IPGG+S P L + +D++ + GS L Sbjct: 259 VPMGITFRELIYEQAGGMRSD-KKLKAFIPGGASAPFLTPDHLD-VKLDFESVALAGSML 316 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ V VM+ TD++ A RL F+ HESCG+C+PCREG+ W++++M R+V Q ++ Sbjct: 317 GSGGVTVMEEGTDMVWAALRLMEFFYHESCGKCSPCREGSSWLVQIMRRIVNKRGQLADL 376 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + L ++ KNI GRT+CA GDA PI +K++R Sbjct: 377 ETLTDLCKNIAGRTVCAFGDAEVSPILSTLKHWR 410 >gi|294506289|ref|YP_003570347.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Salinibacter ruber M8] gi|294342617|emb|CBH23395.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Salinibacter ruber M8] Length = 453 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 180/389 (46%), Positives = 259/389 (66%), Gaps = 9/389 (2%) Query: 27 GHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 G +D + ++LE + +EVKASGL GRGGAGF TG+KW+FMP+ +RP ++ VN Sbjct: 38 GGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPEP-DERPRFIGVN 96 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR +M + PH ++EG ++A +A+ A++Y+RGE+ L+ ++ Sbjct: 97 ADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQLENA 156 Query: 144 YASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 Y +G +G N +G D +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA G+ Sbjct: 157 YEAGYVGENI-MGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQSGI 215 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 +G PTT+NN E++A VP I+ +G YS G + G L+ +SGHV P E + Sbjct: 216 FGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPTGML 275 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ++I CGG+ D L AV+PGGSSVP +PA Q+ G M+ + L E+GS GT + Sbjct: 276 LTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTFCPL 334 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 V+D TD++ + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G + R+IDLL E+ Sbjct: 335 VLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLLLEL 394 Query: 382 SKNIE-GRTICALGDAAAWPIQGLIKNFR 409 N++ GRTICA D A P++ +K FR Sbjct: 395 CDNMDGGRTICAFADGAVGPVRATVKRFR 423 >gi|83814696|ref|YP_444543.1| respiratory-chain NADH dehydrogenase 51 Kd subunit family protein [Salinibacter ruber DSM 13855] gi|83756090|gb|ABC44203.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Salinibacter ruber DSM 13855] Length = 464 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 180/389 (46%), Positives = 259/389 (66%), Gaps = 9/389 (2%) Query: 27 GHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 G +D + ++LE + +EVKASGL GRGGAGF TG+KW+FMP+ +RP ++ VN Sbjct: 49 GGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPEP-DERPRFIGVN 107 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR +M + PH ++EG ++A +A+ A++Y+RGE+ L+ ++ Sbjct: 108 ADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQLENA 167 Query: 144 YASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 Y +G +G N +G D +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA G+ Sbjct: 168 YEAGYVGENI-MGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQSGI 226 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 +G PTT+NN E++A VP I+ +G YS G + G L+ +SGHV P E + Sbjct: 227 FGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPTGML 286 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ++I CGG+ D L AV+PGGSSVP +PA Q+ G M+ + L E+GS GT + Sbjct: 287 LTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTFCPL 345 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 V+D TD++ + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G + R+IDLL E+ Sbjct: 346 VLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLLLEL 405 Query: 382 SKNIE-GRTICALGDAAAWPIQGLIKNFR 409 N++ GRTICA D A P++ +K FR Sbjct: 406 CDNMDGGRTICAFADGAVGPVRATVKRFR 434 >gi|332669454|ref|YP_004452462.1| NADH-quinone oxidoreductase subunit F [Cellulomonas fimi ATCC 484] gi|332338492|gb|AEE45075.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas fimi ATCC 484] Length = 446 Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 196/372 (52%), Positives = 245/372 (65%), Gaps = 5/372 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ VK SGLRGRGGAGF TGMKW F+P P YLVVNADESEPGTCKD +M P Sbjct: 44 VVTMVKESGLRGRGGAGFPTGMKWGFLP-APDGGPRYLVVNADESEPGTCKDIPLMMASP 102 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 L+EG +I S+AIG H AF+YVRGE + L A++E A+G LG N G+D++I Sbjct: 103 QHLVEGMIITSYAIGCHHAFLYVRGEVLHVYRRLLHAIEEARAAGYLGRNILGSGFDLEI 162 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 +H GAGAYICGEETALL+SLEG +GQPRLKPPFPA GLY PT VNNVESIA VP I+ Sbjct: 163 TLHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPAVAGLYARPTVVNNVESIASVPGIV 222 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA W+ G G E + G LFS+SGHV P E + IT EL++ GGIR G + Sbjct: 223 RGGADWFKGMGTERSTGHGLFSLSGHVTRPGQYEAPLGITLRELLDM-AGGIREG-HQVK 280 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 PGGSS P A + +DY+ + GS LGT A+ + D +T +++A+ R FYK Sbjct: 281 FWTPGGSSTPIFTAEHLD-VPLDYESVGAAGSMLGTRALQIFDETTSVVRAVTRWLEFYK 339 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 HESCG+CTPCREGT W+++V++R+ G +IDLL ++ NI GR CALGD A PI Sbjct: 340 HESCGKCTPCREGTYWLVQVLKRIEAGRGTHEDIDLLLDLCDNILGRAFCALGDGATSPI 399 Query: 402 QGLIKNFRPLIE 413 ++ FR E Sbjct: 400 TSAVQYFREEFE 411 >gi|289751828|ref|ZP_06511206.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T92] gi|289692415|gb|EFD59844.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T92] Length = 380 Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 190/377 (50%), Positives = 246/377 (65%), Gaps = 28/377 (7%) Query: 16 QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55 Q L+ +SR HWD+ + K L D +I+ VK SGLRGR Sbjct: 4 QATPLTPVISR-HWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62 Query: 56 GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 GGAGF+TG KWSF+P+ + +PHYLVVNADESEPGTCKD +M PH LIEG +IA Sbjct: 63 GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171 ++AI AH AF+YVRGE + L AV E YA+G LG N G+D++++VH GAGAYI Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182 Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 CGEETALL+SLEG++GQPRL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242 Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 G E + G L+S+SGHV P E + IT EL++ + GG+R G L PGGSS P Sbjct: 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTP 300 Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 L + +DY+G+ GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPC Sbjct: 301 LL-TDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359 Query: 352 REGTGWMMRVMERLVKG 368 REGT W+ ++ ERL G Sbjct: 360 REGTFWLDKIYERLETG 376 >gi|296130546|ref|YP_003637796.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM 20109] gi|296022361|gb|ADG75597.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM 20109] Length = 444 Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 201/388 (51%), Positives = 247/388 (63%), Gaps = 5/388 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + + K L ++ VK SGLRGRGGAGF TGMKW F+P P YLVVNADE Sbjct: 27 GGYRGLRKALTMAPADVVTTVKDSGLRGRGGAGFPTGMKWGFLP-APDGGPRYLVVNADE 85 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGTCKD +M P LIEG +I S+AIG H AFIYVRGE + L AV E + Sbjct: 86 SEPGTCKDIPLMMASPQELIEGVIITSYAIGCHHAFIYVRGEVVHVYRRLLEAVREAREA 145 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G LG++ G+D++I VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA GLY P Sbjct: 146 GYLGTDILGSGFDLEITVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPAVAGLYARP 205 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVES+A VP I+ GA W++ G E + G LFS+SGHV P E + IT EL Sbjct: 206 TVVNNVESVASVPGIIVGGADWFTSMGTERSAGHGLFSLSGHVTRPGQYEAPLGITLREL 265 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 ++ GG+R G L PGGSS P A + +DY+ + + GS LGT A+ + D Sbjct: 266 LDM-AGGVREG-HELKFWTPGGSSTPIFTAEHLD-VPLDYESVGKAGSMLGTRALQIFDE 322 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +T ++KA+ R FYKHESCG+CTPCREGT W+ +VM RL G +IDLL ++ NI Sbjct: 323 TTSVVKAVSRWIQFYKHESCGKCTPCREGTFWLAQVMARLEAGQGTSADIDLLLDLCDNI 382 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIE 413 GR CALGD A P+ I+ FR E Sbjct: 383 LGRAFCALGDGATSPVTSAIQYFREEFE 410 >gi|218508846|ref|ZP_03506724.1| NADH dehydrogenase I subunit F [Rhizobium etli Brasil 5] Length = 196 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 167/196 (85%), Positives = 182/196 (92%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK RPHYLVVN Sbjct: 1 MSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVN 60 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+DEC Sbjct: 61 ADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAIDEC 120 Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 Y GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GLYG Sbjct: 121 YDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYG 180 Query: 204 CPTTVNNVESIAVVPT 219 CPTTVNNVESIAV PT Sbjct: 181 CPTTVNNVESIAVAPT 196 >gi|156743330|ref|YP_001433459.1| NADH-quinone oxidoreductase subunit F [Roseiflexus castenholzii DSM 13941] gi|156234658|gb|ABU59441.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus castenholzii DSM 13941] Length = 451 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 187/387 (48%), Positives = 249/387 (64%), Gaps = 7/387 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E+ I+ VK SGLRGRGGAGF TG+KW F+PK P YL+ N DESEPGT + Sbjct: 55 VTERTPADIVQTVKDSGLRGRGGAGFPTGVKWGFLPK--GVYPRYLLCNCDESEPGTFNN 112 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 I+ PH LIEG I+++AI A+ A+IY+RGEF L+ A+ + YA G LG N Sbjct: 113 HQIIDRNPHQLIEGIAISAYAIEANLAYIYIRGEFAAAARRLERAIAQAYARGFLGRNIF 172 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 GYD+DI VH GAGAYICGEETAL+ESLEGK GQPRL+PPFPA GLYG PT +NNVE+ Sbjct: 173 GTGYDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLRPPFPAVAGLYGKPTIINNVET 232 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCG 271 + VP I+R GA WY FG E + GTK+FS+SGHV P E ELI ++C Sbjct: 233 LTNVPMIVRHGAVWYRQFGTEKSPGTKVFSVSGHVKRPGNYEAPFGTPLRELIFSPEYCQ 292 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+RG N+ V+PGG+S L A + MDY+ L GS LG+ VIV+D + ++ Sbjct: 293 GMRGN-HNVKIVVPGGASAGWLTADDL-DVTMDYEALAAKGSMLGSGGVIVLDERVNAVE 350 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 +++ F+KHESCG+CTPCREGT ++++V+ R+ G ++ +I LL++V + G C Sbjct: 351 VAYKMDEFFKHESCGKCTPCREGTYFLVKVLHRITHGHGRQDDIPLLHDVYNQMAGNCFC 410 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LG++A PI+ ++ F E I Q Sbjct: 411 LLGESAVVPIRSALRLFPHEFERAIAQ 437 >gi|320095553|ref|ZP_08027217.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 178 str. F0338] gi|319977531|gb|EFW09210.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 178 str. F0338] Length = 433 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 199/406 (49%), Positives = 246/406 (60%), Gaps = 11/406 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L RG + +++ II+ VKASGLRGRGGAGF TG+KWSF+P P Sbjct: 25 TLDSYRQRGGYQGLERARTMEPAAIIDAVKASGLRGRGGAGFPTGLKWSFLPP-DDGGPR 83 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+RGE L Sbjct: 84 YLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLRGEVAHVYRRLLR 143 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 AV E SG+LG + I H GAGAYICGEETALL+SLEG++G PRLKPPFPA Sbjct: 144 AVREATESGVLGG-------LRITAHAGAGAYICGEETALLDSLEGRRGHPRLKPPFPAV 196 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GLY PT VNNVE+IA V + R WYS G + ++G +FS+SGHV P E Sbjct: 197 AGLYARPTVVNNVETIAQVAGVFRNSPEWYSSMGTDKSKGHGIFSLSGHVANPGQFEAPF 256 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT ELI+ GGIR G L PGGSS P ++ +DY+ + GS LGT Sbjct: 257 GITMRELIDM-AGGIRQG-HRLKFWTPGGSSTPIFTEDELD-TPLDYESVGAAGSMLGTR 313 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 A+ V D + +++ I R S FY+HESCG+CTPCREGT W+ ++M RL +G ++DLL Sbjct: 314 ALQVFDETVSVVRVIARWSEFYQHESCGKCTPCREGTYWIKQIMLRLERGEGLPGDVDLL 373 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 374 DEIAHNIAGRSFCPLGDAAATPIMSGIKRFREEFEAGLTTPARERF 419 >gi|296140856|ref|YP_003648099.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola DSM 20162] gi|296028990|gb|ADG79760.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola DSM 20162] Length = 446 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 208/415 (50%), Positives = 271/415 (65%), Gaps = 13/415 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP-------- 70 +L+ + G + +D+ L D +I VK +GLRGRGGAGF TG+KWSF+P Sbjct: 20 TLASYRASGGYTGIDRALAMTPDQVIELVKEAGLRGRGGAGFPTGLKWSFIPQLRAGEEP 79 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K +D+PHYLVVNADESEPGTCKD +M PHTLIEG +IAS+AI A AFIYVRGE + Sbjct: 80 KPGADKPHYLVVNADESEPGTCKDMPLMFATPHTLIEGVIIASYAIRARQAFIYVRGEVL 139 Query: 131 RERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + L+AAV E YA+G LG + G+ VD++VH GAGAYICGEETALL+SLEG++GQP Sbjct: 140 GVQRRLRAAVAEAYAAGYLGKPLGENGFTVDLVVHGGAGAYICGEETALLDSLEGRRGQP 199 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RL+PPFPA GLY PT VNNVESIA VP IL GA W+ G E + G L+S+SGHV Sbjct: 200 RLRPPFPAVAGLYASPTCVNNVESIASVPAILANGADWFRTMGSEKSPGFTLYSVSGHVV 259 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E ++ IT E++E GG+R G L PGGSS P L A + +DY+G+ Sbjct: 260 RPGQYEAALGITLREMLEL-AGGVRPG-HELKFWTPGGSSTPLLTAEHL-DVPLDYEGVA 316 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 GS LGT A+ + D + +++A+ R FY HESCG+CTPCREGT W++R++ RL +G Sbjct: 317 GAGSMLGTKALQIFDDTVCVVRAVLRWLEFYAHESCGKCTPCREGTYWLVRLLRRLEQGE 376 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + ++ L +V+ + G+ CALGD AA PIQ + FR E + + C F Sbjct: 377 GEPEDLTTLADVADGVLGKAFCALGDGAASPIQSSLTYFREEYERHVHE-RGCPF 430 >gi|222526373|ref|YP_002570844.1| NADH-quinone oxidoreductase subunit F [Chloroflexus sp. Y-400-fl] gi|222450252|gb|ACM54518.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus sp. Y-400-fl] Length = 434 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 186/388 (47%), Positives = 252/388 (64%), Gaps = 9/388 (2%) Query: 26 RGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 G W+ L EK I+ VK SGLRGRGGAGF TG+KW F+PK P YL+ N Sbjct: 26 HGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLLCNC 83 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT + I+ PH LIEG ++++AI A+ A+IY+RGEF +L+ A+ + Y Sbjct: 84 DESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIAQAY 143 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +G LG N G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA GLYG Sbjct: 144 EAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAGLYG 203 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT +NNVE++A VP I+ +G +WY G E + GTK FS+SGHVN P E + Sbjct: 204 KPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGVPLR 263 Query: 264 ELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ELIE ++ GG++GG + +IPGG+S P L A + +DY+ + GS LG+ AVI Sbjct: 264 ELIESPEYGGGMKGG-RPVKIIIPGGASAPWLTADHLD-VPLDYESVAAAGSMLGSGAVI 321 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDLLYE 380 V++ + +++ F+KHESCG+CTPCREGT W++R + R+V +G A +ID L+ Sbjct: 322 VLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDTLHS 381 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + + G C LG++A PI+ ++ F Sbjct: 382 IYRQMAGNCFCLLGESAVMPIKSALQLF 409 >gi|94968339|ref|YP_590387.1| NADH-quinone oxidoreductase, F subunit [Candidatus Koribacter versatilis Ellin345] gi|94550389|gb|ABF40313.1| NADH dehydrogenase subunit F [Candidatus Koribacter versatilis Ellin345] Length = 439 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 191/415 (46%), Positives = 259/415 (62%), Gaps = 4/415 (0%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+ ++ ++ +G + + + V K L D IINEVKAS LRGRGGAGF TG Sbjct: 9 DEVKVISSRWGKGATDIDRYLELDGYKAVQKALTMTPDAIINEVKASNLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+PK S +P Y++ N DESEPGTCKDR I H+PH +IEG +IA A+GA A+I Sbjct: 69 LKWSFVPKE-SAKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAKSAYI 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE+ +Q A+ + YA G +G N G D D+ H GAGAY GEE+AL+ESL Sbjct: 128 YLRGEYRYLSIIMQKAIADAYAKGFIGKNIFGSGKDFDVYWHGGAGAYEVGEESALMESL 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR++PPFPA VGL+G PT +NN E++A VP IL G Y+ G N GT+LF Sbjct: 188 EGKRGIPRIRPPFPAVVGLWGGPTVINNAETLAAVPAILLMGGQKYADLGTPRNGGTRLF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG++ P E M ++I + GG G L AV+PGGSS P L A ++ A Sbjct: 248 CLSGNLEKPGVYELPMGYNLKKMIYE-VGGGIQGGRGLKAVVPGGSSTPVLTADEIDIA- 305 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D + + GS LG+ V+V+D T I+K R FY+HESCG C PCREGT W+ + + Sbjct: 306 MDFDSVMKAGSMLGSGGVVVLDDRTCIVKFALRTIKFYQHESCGWCIPCREGTDWLKKTL 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 R G K++ID + ++ N+ GRT C LGDAAA P ++ FR E+ ++ Sbjct: 366 TRFHAGGGIKKDIDNIKYLADNMLGRTFCPLGDAAAMPTIAFVEKFRKEFEDHLE 420 >gi|163848445|ref|YP_001636489.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aurantiacus J-10-fl] gi|163669734|gb|ABY36100.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aurantiacus J-10-fl] Length = 446 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 186/388 (47%), Positives = 252/388 (64%), Gaps = 9/388 (2%) Query: 26 RGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 G W+ L EK I+ VK SGLRGRGGAGF TG+KW F+PK P YL+ N Sbjct: 38 HGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLLCNC 95 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT + I+ PH LIEG ++++AI A+ A+IY+RGEF +L+ A+ + Y Sbjct: 96 DESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIAQAY 155 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +G LG N G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA GLYG Sbjct: 156 EAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAGLYG 215 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT +NNVE++A VP I+ +G +WY G E + GTK FS+SGHVN P E + Sbjct: 216 KPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGVPLR 275 Query: 264 ELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ELIE ++ GG++GG + +IPGG+S P L A + +DY+ + GS LG+ AVI Sbjct: 276 ELIESPEYGGGMKGG-RPVKIIIPGGASAPWLTADHLD-VPLDYESVAAAGSMLGSGAVI 333 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDLLYE 380 V++ + +++ F+KHESCG+CTPCREGT W++R + R+V +G A +ID L+ Sbjct: 334 VLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDTLHS 393 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + + G C LG++A PI+ ++ F Sbjct: 394 IYRQMAGNCFCLLGESAVMPIKSALQLF 421 >gi|86359331|ref|YP_471223.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN 42] gi|86283433|gb|ABC92496.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN 42] Length = 420 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 195/412 (47%), Positives = 259/412 (62%), Gaps = 9/412 (2%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS + G + + K+L E D ++ VK S LRGRGGAGF TGMKWSF+PK S Sbjct: 15 GHLLSTYEAGGGYQALVKVLREYTPDEVVELVKRSNLRGRGGAGFLTGMKWSFVPKQ-SS 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YL NADE EPGT KDR +M +PH LIEG ++++AIGA A++Y+RGE++ Sbjct: 74 KPKYLCCNADEGEPGTFKDRILMERDPHQLIEGLAVSAYAIGAKTAYVYIRGEYVTAIRR 133 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +A G LGS LG D + VH GAGAYICGEETA+LESLEG++ QPRLKP Sbjct: 134 LEQAIAEAHAKGYLGSRI-LGSDFNFTVHIHCGAGAYICGEETAMLESLEGRRAQPRLKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY PT +NNVE++A VP I+ RG+ W+ G E + G KL+ +SG V P Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVVRGSDWFRDIGPEKSPGPKLYCVSGQVRKPGL 252 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M I EL++ H GG G + AVIPGG S P +P + MD+D L GS Sbjct: 253 YELPMGIPLRELVD-HAGGPPPG-RRIKAVIPGGVSAPVIPEHGLDVG-MDFDSLAAAGS 309 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++++ R+ G Sbjct: 310 MLGSAGVIVIDNSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKILRRIEAGDGAPG 369 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 370 DLEQLDMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRCPLH 420 >gi|226365385|ref|YP_002783168.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4] gi|226243875|dbj|BAH54223.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4] Length = 432 Score = 355 bits (912), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 198/382 (51%), Positives = 261/382 (68%), Gaps = 5/382 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I+ VK +GLRGRGGAGF TGMKWSF+P+ D+PHYLVVNADESE Sbjct: 28 YEGLQKALRMEPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQ-GDDKPHYLVVNADESE 86 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH L+EG +IA++AI A AFIYVRGE + LQAAV E YA+G Sbjct: 87 PGTCKDMPLLLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRRLQAAVAEAYAAGY 146 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY PT Sbjct: 147 LGKDILGTGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYASPTV 206 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP I+ G W+ G E + G L+S+SGHV P E + IT EL+ Sbjct: 207 VNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTTPGQYEAPLGITLRELL- 265 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + GG+R G L PGGSS P + A +DY+G+ GS LGT A+ + D +T Sbjct: 266 GYAGGVRAG-HRLKFWTPGGSSTPIFTDEHLDVA-LDYEGVGAAGSMLGTKALQIFDETT 323 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G ++ L +++ NI G Sbjct: 324 CVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDADLQKLLDIADNILG 383 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 ++ CALGD AA PI +K FR Sbjct: 384 KSFCALGDGAASPIMSSVKYFR 405 >gi|330465207|ref|YP_004402950.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris AB-18-032] gi|328808178|gb|AEB42350.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris AB-18-032] Length = 438 Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 190/395 (48%), Positives = 250/395 (63%), Gaps = 11/395 (2%) Query: 22 DSMSRGHWDNVD------KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 D+ G ++ +D K L+ D +I VK SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWQIGTYEKLDGYAALRKALKAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M H+PH+L+EG +IAS+AI A+ A+IY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ AV+E A G LG N G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRNAVEEAKAKGYLGKNILGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG + P Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKSMGTEKSAGPMIYSLSGRIANPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT ELIE GG++ G NL PGGSS P L A + +D++G+ GS Sbjct: 263 ECGLGITLRELIEL-AGGMQPG-HNLRFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G + Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHDD 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L + NI GR+ C LGD A + +K F+ Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFK 414 >gi|238062216|ref|ZP_04606925.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC 39149] gi|237884027|gb|EEP72855.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC 39149] Length = 438 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 185/377 (49%), Positives = 242/377 (64%), Gaps = 5/377 (1%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K L+ D +I +K SGLRGRGGAGF TG+KW F+P+ +PHYLVVNADE EPGTCK Sbjct: 42 KALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDGKPHYLVVNADEGEPGTCK 100 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152 D +M H+PH+L+EG +I S+AI A A+IY+RGE + L+ AV E YA G LG + Sbjct: 101 DLPLMTHDPHSLVEGVIIGSYAIRASRAYIYIRGEAVHAARRLRNAVQEAYAKGYLGRDI 160 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA GLY PT VNNV Sbjct: 161 LGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVVNNVG 220 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 +IA VP I+ GA W+ G E + G ++S+SG V P E +M +T EL+E GG Sbjct: 221 TIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRVANPGQYECTMGVTLRELLEL-AGG 279 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 ++ G NL PGGSS P L A + +D++G+ GS LGT A + + A Sbjct: 280 MQPG-HNLRFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSILGTTATQIFSDQDCPVYA 337 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 +R FY HESCG+CTPCREG WM+RV R++ G ++D L + NI GR+ C Sbjct: 338 TYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHEDLDTLLDTCDNILGRSFCG 397 Query: 393 LGDAAAWPIQGLIKNFR 409 LGD A + +K F+ Sbjct: 398 LGDGATSSVTSSLKYFK 414 >gi|326772147|ref|ZP_08231432.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus C505] gi|326638280|gb|EGE39181.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus C505] Length = 443 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 204/416 (49%), Positives = 256/416 (61%), Gaps = 19/416 (4%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +T L + G ++ + K + +I +K SGLRGRGGAGF Sbjct: 20 LWDQERSWT---------LQTYLDHGGYEGLKKAKTLSCEELIGLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177 F+Y+RGE L +AV E SGLL ++ G D + I H GAGAYICGEETA Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLL--DTGFGLDGQQRLRITAHAGAGAYICGEETA 187 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++ Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSK 247 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G +FS+SGHV +P E IT ELIE GGIR G L +PGGSS P + Sbjct: 248 GHGIFSVSGHVAHPGQYEAPFGITMRELIEL-SGGIRPG-HELKFWVPGGSSTPIFGPDE 305 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT W Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 M ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420 >gi|320532546|ref|ZP_08033355.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320135240|gb|EFW27379.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 443 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 203/416 (48%), Positives = 257/416 (61%), Gaps = 19/416 (4%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +T L + G ++ + + + +I +K SGLRGRGGAGF Sbjct: 20 LWDQERSWT---------LQAYLDHGGYEGLKQAKTLSSEDLITLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177 F+Y+RGE L +AV E SGLL ++ G D + I H GAGAYICGEETA Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLL--DTGFGLDGQQPLRITAHAGAGAYICGEETA 187 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++ Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPEILARGAQWYSTMGTEKSK 247 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G +FS+SGHV +P E IT ELIE GGIR G + L +PGGSS P + Sbjct: 248 GHGIFSVSGHVAHPGQYEAPFGITMRELIEL-SGGIRPGHE-LKFWVPGGSSTPIFGPDE 305 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT W Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 M ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420 >gi|256425963|ref|YP_003126616.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] gi|256040871|gb|ACU64415.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] Length = 454 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 198/403 (49%), Positives = 263/403 (65%), Gaps = 16/403 (3%) Query: 25 SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + G + + +K L+ D +++EVK SGLRGRGGAGF TGMKWSF+ K P YLV N Sbjct: 23 ANGGYGSAEKALKSMSPDQVLDEVKKSGLRGRGGAGFPTGMKWSFIAKP-EGVPRYLVCN 81 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR +M PH LIEG +I+S+ +G + +IY+RGE+ + L+ A+ + Sbjct: 82 ADESEPGTFKDRYLMEFLPHLLIEGLLISSYTLGCNSCYIYIRGEYAWIPDILEEAIADA 141 Query: 144 YASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 +G LG N + G+D++I V GAGAYICGEETAL+ESLEGK+G PR+KPPFPA GL+ Sbjct: 142 KKNGWLGKNIQGTGFDLEIYVQRGAGAYICGEETALIESLEGKRGNPRIKPPFPAVKGLW 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 CPT VNNVE++A V ILR G Y+ +G + GTKL S G++N P E M+I+ Sbjct: 202 DCPTVVNNVETLATVVPILRIGGEEYAKYGTGKSTGTKLISACGNINKPGVYEIEMNISV 261 Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLKE---- 310 +E I +++CGGI G L A IPGGSSVP LPA + +M Y+ L + Sbjct: 262 EEFIYSDEYCGGIANG-KRLKACIPGGSSVPILPANLLLKTAKGEPRMMTYESLADGGFA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ LG+ IV+D I+K + FY HESCGQC+PCREGTGWM RV+ + G Sbjct: 321 TGTMLGSGGFIVLDEDQCIVKNTLTFARFYHHESCGQCSPCREGTGWMKRVLLNIENGKG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E Sbjct: 381 KMSDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFE 423 >gi|325067542|ref|ZP_08126215.1| NADH-quinone oxidoreductase, F subunit [Actinomyces oris K20] Length = 443 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 204/416 (49%), Positives = 258/416 (62%), Gaps = 19/416 (4%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +T L + G ++ + K + +I+ +K SGLRGRGGAGF Sbjct: 20 LWDQERSWT---------LQAYLDHGGYEGLKKAKTLSCEDLISLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177 F+Y+RGE L +AV E SGLL ++ G D + I H GAGAYICGEETA Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLL--DTGFGLDGQQRLRITAHAGAGAYICGEETA 187 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++ Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSK 247 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G +FS+SGHV +P E IT ELIE GGIR G + L +PGGSS P + Sbjct: 248 GHGIFSVSGHVAHPGQYEAPFGITMRELIEL-SGGIRPGHE-LKFWVPGGSSTPIFGPDE 305 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT W Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 M ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420 >gi|189218230|ref|YP_001938872.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum infernorum V4] gi|189185088|gb|ACD82273.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum infernorum V4] Length = 458 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 187/417 (44%), Positives = 260/417 (62%), Gaps = 23/417 (5%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + G + + K L +I+ EVK SGLRGRGGAGF TG+KW F+ + +P YL+ N Sbjct: 27 LQHGGYQVLKKALSLDPFFIVQEVKKSGLRGRGGAGFPTGVKWGFINHEKNTKPVYLLCN 86 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR I+ +PH LIEG +I+++A AH +IY+RGEF R E L+ A+ E Sbjct: 87 ADESEPGTFKDRQIIYKDPHQLIEGMIISAYANRAHLGYIYIRGEFARGAEILEKALSEA 146 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201 LG N GYD++I V GAGAYICGEET L+ESLEGK+ PR+KPP FPA +GL Sbjct: 147 RERNFLGKNILGSGYDLEIYVFRGAGAYICGEETGLIESLEGKRAYPRIKPPYFPAVLGL 206 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SI 260 Y CPT VNNVE++ V I+ G ++ G NN GT+++ +SG VN P E +I Sbjct: 207 YMCPTIVNNVETLCHVKHIVDMGGEAFAQIGTPNNTGTRIWCVSGDVNKPGYYEYPCGAI 266 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-------------------MRGA 301 TF EL+ + CGGIR G + L AVIPGGSS L A + + Sbjct: 267 TFGELLYEVCGGIRNG-NKLKAVIPGGSSAKVLRADKKYKIPKKKSDGTTEMVEVGLEDI 325 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D + GS G+ +IVMD + D+++ + ++ FY HESCGQCTPCREG+ WM ++ Sbjct: 326 PLDFDTVAATGSMSGSGGIIVMDDTRDMVECLRNIAEFYAHESCGQCTPCREGSLWMKKI 385 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++R+ +G +K + LL +V+ +I GRTICA G+A +WP+Q ++ F ++ + Sbjct: 386 LDRICRGKGRKEDSQLLLDVANHIAGRTICAFGEACSWPVQSFVEMFEEEFTAKVKE 442 >gi|329944207|ref|ZP_08292466.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328530937|gb|EGF57793.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 443 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 204/416 (49%), Positives = 255/416 (61%), Gaps = 19/416 (4%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +T L + G ++ + K + +I +K SGLRGRGGAGF Sbjct: 20 LWDQERSWT---------LQAYLDHGGYEGLKKAKTLSSEDLITLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177 F+Y+RGE L AV E SGLL ++ G D + I H GAGAYICGEETA Sbjct: 130 FVYLRGEVPHVYRRLLGAVREATESGLL--DTGFGLDGQQRLRITAHAGAGAYICGEETA 187 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++ Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSK 247 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G +FS+SGHV P E IT ELIE GGIR G + L +PGGSS P + Sbjct: 248 GHGIFSVSGHVARPGQYEAPFGITMRELIEL-SGGIRPGHE-LKFWVPGGSSTPIFGPDE 305 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT W Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 M ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420 >gi|291298803|ref|YP_003510081.1| NADH-quinone oxidoreductase F subunit [Stackebrandtia nassauensis DSM 44728] gi|290568023|gb|ADD40988.1| NADH-quinone oxidoreductase, F subunit [Stackebrandtia nassauensis DSM 44728] Length = 438 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 185/389 (47%), Positives = 246/389 (63%), Gaps = 5/389 (1%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K + D +I +K SG RGRGGAGF GMKW+F+P+ +PHYLVVNADE EPGTCK Sbjct: 42 KAFKYTPDDLIAFMKESGHRGRGGAGFPVGMKWAFIPQ-NDGKPHYLVVNADEGEPGTCK 100 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152 D +M ++PH+LIEG +IA +A+ A AFIY+RGE + L+ AV+E A+G LG N Sbjct: 101 DLPLMMNDPHSLIEGIIIACYAVRASRAFIYIRGEAVHAARRLRHAVEEAKAAGYLGDNI 160 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G D++I+VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA GLY PT +NNV Sbjct: 161 LDSGLDLEIVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVINNVG 220 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 SIA VP I+ GA W+ G EN GT ++S+SG V P E + T DEL+E G Sbjct: 221 SIASVPHIVLGGAEWWKSLGSENAAGTMIYSLSGRVANPGQYECRLGTTLDELLELAGGM 280 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 +G NL PGGSS P L A + +D+D + + GS LGT A+++ + + Sbjct: 281 AKG--HNLKFWTPGGSSTPML-AAKHSDVPLDFDNIAKAGSILGTTAMMIYSDADCPVYC 337 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 +R FY HESCG+CTPCREG WM R+ R++ G ++D L + N+ GR+ C Sbjct: 338 TYRWLQFYAHESCGKCTPCREGNYWMTRIYRRILSGNGTHEDLDTLLDACDNLLGRSFCG 397 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 LGD A P+ +K+F+ + I+ + R Sbjct: 398 LGDGATSPVTSSLKHFKQDYIDYIEGHRR 426 >gi|229490823|ref|ZP_04384658.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121] gi|229322213|gb|EEN87999.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121] Length = 439 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 204/415 (49%), Positives = 268/415 (64%), Gaps = 14/415 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 +L + + + K L D +I VK +GLRGRGGAGF TG+KWSF+P+ D+P Sbjct: 18 TLDSYLRHDGYQALRKALAMSPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQSTEDKPG 77 Query: 78 ----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 HYLVVNADESEPGTCKD +M PHTL+EG +IA++AI A AFIYVRGE + Sbjct: 78 DGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVVPVL 137 Query: 134 ESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 LQ AV E YA+G LG S G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+ Sbjct: 138 RRLQTAVAEAYAAGYLGRSILGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLR 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLY CPT VNNVESIA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 198 PPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVTTPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT EL++ + GG+R G L PGGSS P + +DY+G+ G Sbjct: 258 QYEAPLGITLRELLD-YAGGVRTG-HTLKFWTPGGSSTPIF-TDEHLDVPLDYEGVGAAG 314 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL G + Sbjct: 315 SMLGTKALQIFDDTTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGTGTE 374 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY--HRCNFQ 425 ++ L ++S I G++ CALGD A PI +K FR EE + + + C F Sbjct: 375 ADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFR---EEYVAHFDGNGCPFD 426 >gi|297570901|ref|YP_003696675.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium haemolyticum DSM 20595] gi|296931248|gb|ADH92056.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium haemolyticum DSM 20595] Length = 441 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 201/415 (48%), Positives = 259/415 (62%), Gaps = 15/415 (3%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D +R +T L G + +++R WD + + + + N +K SGLRGRGGAGF TG Sbjct: 19 DTERPWT-LDGYRATGGYQAIARA-WD-----INQEKGALTNLIKESGLRGRGGAGFPTG 71 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+P P YLVVNADESEPGTCKD + PH LIEG I AIG H FI Sbjct: 72 LKWSFLPPE-DGGPRYLVVNADESEPGTCKDIPFLMANPHLLIEGMAICLMAIGGHDGFI 130 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGE + L AAV E +G++G+ YD++I VH GAGAYICGEETALL+S Sbjct: 131 YLRGEVVHVYRRLLAAVREAKEAGIIGTGCGPNGDYDINITVHAGAGAYICGEETALLDS 190 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS--GFGRENNRGT 239 LEG +GQPRLKPPFPA GLY PT VNNVESIA VP I+ GA W++ G G +N+ G Sbjct: 191 LEGFRGQPRLKPPFPAVAGLYARPTVVNNVESIASVPGIINNGAEWFTAMGAGTKNSPGH 250 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +FS+SGHV P E IT EL++ GGIR G + I GGSS P + Sbjct: 251 GIFSLSGHVKNPGQFEAPFGITMRELLDM-AGGIREGHELKFFAI-GGSSAPLFTPEHLD 308 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + Y+ + + GS L T A+ + D + +++ + R + FY+HESCG+CTPCREGT WM Sbjct: 309 -VPLGYEEVAQAGSMLATRAIQIFDETVSVVRVVSRWTDFYQHESCGKCTPCREGTFWMR 367 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++M R G + +IDLLY+V+ NI GR+ CALGDAAA PI+ I FR E+ Sbjct: 368 QIMHRFEAGQGTEADIDLLYDVASNIAGRSFCALGDAAATPIRSAIDLFRSEFED 422 >gi|295837120|ref|ZP_06824053.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74] gi|197697230|gb|EDY44163.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74] Length = 461 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 197/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 50 YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 108 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + L AV E YA+G Sbjct: 109 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 168 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G DV++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 169 LGENILGSGTDVELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 228 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 229 VNNVESIASVPAILNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 288 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 289 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 345 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 346 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 405 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ CALGD AA PI +K FR E +D Sbjct: 406 KSFCALGDGAASPIASSLKYFREEYEAHLD 435 >gi|318057838|ref|ZP_07976561.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actG] gi|318078936|ref|ZP_07986268.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actF] Length = 463 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 52 YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 110 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + L AV E YA+G Sbjct: 111 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 170 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 171 LGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 230 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 231 VNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 290 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 291 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 347 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 348 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 407 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ CALGD AA PI +K FR E +D Sbjct: 408 KSFCALGDGAASPIASSLKYFREEYEAHLD 437 >gi|302521199|ref|ZP_07273541.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78] gi|302430094|gb|EFL01910.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78] Length = 461 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 50 YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 108 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + L AV E YA+G Sbjct: 109 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 168 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 169 LGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 228 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 229 VNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 288 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 289 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 345 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 346 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 405 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ CALGD AA PI +K FR E +D Sbjct: 406 KSFCALGDGAASPIASSLKYFREEYEAHLD 435 >gi|333025114|ref|ZP_08453178.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071] gi|332744966|gb|EGJ75407.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071] Length = 463 Score = 352 bits (903), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 52 YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 110 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + L AV E YA+G Sbjct: 111 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 170 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 171 LGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 230 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL RG W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 231 VNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 290 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 291 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 347 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI G Sbjct: 348 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 407 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ CALGD AA PI +K FR E +D Sbjct: 408 KSFCALGDGAASPIASSLKYFREEYEAHLD 437 >gi|297192783|ref|ZP_06910181.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] gi|297151494|gb|EFH31198.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] Length = 456 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 195/391 (49%), Positives = 255/391 (65%), Gaps = 5/391 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 48 YEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 106 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L AV E Y +G Sbjct: 107 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGF 166 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CPT Sbjct: 167 LGKNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 226 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + IT +L++ Sbjct: 227 VNNVESIASVPAILHKGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 286 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+R G L PGGSS P + +DY+G+ GS LGT A+ D +T Sbjct: 287 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 343 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++D L +++ NI G Sbjct: 344 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGNGVMSDLDKLNDIADNING 403 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ CALGD AA PI +K FR E+ I Q Sbjct: 404 KSFCALGDGAASPIFSSLKYFREEYEQHITQ 434 >gi|227497899|ref|ZP_03928079.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832691|gb|EEH65074.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 452 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 194/399 (48%), Positives = 251/399 (62%), Gaps = 10/399 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L + G ++ + K + ++N VK+S LRGRGGAGF TG+KWSF+P +P Sbjct: 37 TLEAYRANGGYEGLAKAKTMSAEELVNYVKSSNLRGRGGAGFPTGLKWSFLP-APDGKPR 95 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADESEPGTCKD + P LIEG I AIG AF+Y+RGE L Sbjct: 96 YLVVNADESEPGTCKDIPTIMANPQALIEGIAITCRAIGGDHAFVYLRGEVTHVYRRLLH 155 Query: 139 AVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 AV E SGLL ++ G D + I H GAGAYICGEETALL+SLEG++G PRLKPP Sbjct: 156 AVREATGSGLL--DTGFGLDGNQPLRITAHAGAGAYICGEETALLDSLEGRRGHPRLKPP 213 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVE+IA VP IL RGA WY+ G E ++G +FS+SGHV +P Sbjct: 214 FPAVAGLYARPTVVNNVETIASVPGILARGADWYNAMGTERSKGHGIFSVSGHVKHPGQF 273 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E IT +LIE GG+R G + L +PGGSSVP ++ +DY+ + GS Sbjct: 274 EAPFGITMRQLIEM-AGGVREGHE-LKFWVPGGSSVPIFGPEELD-VPLDYESVGAAGSM 330 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT WM ++M RL G + Sbjct: 331 LGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMRQIMLRLEAGQGLPGD 390 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 ++ L +++ NI GR+ CALGDAAA P++ I FR E Sbjct: 391 VEKLEDIAGNIAGRSFCALGDAAATPVRSGIARFRSEFE 429 >gi|239980147|ref|ZP_04702671.1| NADH dehydrogenase I chain F [Streptomyces albus J1074] gi|291452002|ref|ZP_06591392.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074] gi|291354951|gb|EFE81853.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074] Length = 449 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 198/404 (49%), Positives = 262/404 (64%), Gaps = 7/404 (1%) Query: 16 QGKSLSDSMSRGH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 Q +S + R H ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 26 QPESWTLETYRRHDGYEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-G 84 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 85 DGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVL 144 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L AV E Y +G LG + G D+D+ VH GAGAYICGEETALL+SLEG++GQPRL+ Sbjct: 145 RRLHEAVREAYEAGYLGKDVLGSGLDLDLTVHAGAGAYICGEETALLDSLEGRRGQPRLR 204 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLY CPT VNNVESIA VP IL++G W+ G E + G L+S+SGHV P Sbjct: 205 PPFPAVAGLYACPTVVNNVESIASVPAILQQGKEWFRSMGSEKSPGFTLYSLSGHVAGPG 264 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT +L++ GG+R G L PGGSS P + +DY+G+ G Sbjct: 265 QYEAPLGITLRQLLDM-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAG 321 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 322 SMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGQGKM 381 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++D L +++ NI G++ CALGD AA PI +K FR E+ I Sbjct: 382 SDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRDEYEQHI 425 >gi|300775177|ref|ZP_07085039.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910] gi|300505917|gb|EFK37053.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910] Length = 452 Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 200/401 (49%), Positives = 268/401 (66%), Gaps = 15/401 (3%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G + +K L+ D I+ EVKASGLRGRGGAGF TGMKWSF+ K P +LVVNAD Sbjct: 24 QGGYTAAEKALKMTPDEILEEVKASGLRGRGGAGFPTGMKWSFLAKP-EGVPRHLVVNAD 82 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGT KDR +M PH LIEG +I+S+ +G++ ++IY+RGE+ + L+ A++E A Sbjct: 83 ESEPGTFKDRYLMEFLPHLLIEGMLISSYCLGSNTSYIYIRGEYSWIPDILEEAIEEAKA 142 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N G+D++I V G GAYICGEETALLESLEGK+G PRLKPPFPA GL+ Sbjct: 143 AGFLGKNILGTGFDLEIYVQRGGGAYICGEETALLESLEGKRGNPRLKPPFPAVKGLWER 202 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVESIA V I+ + Y+ G + GTKL S G++N P E M+IT +E Sbjct: 203 PTVVNNVESIAAVVPIIDITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMTITVEE 262 Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----MG 312 I +++CGGI+ G L A IPGGSSVP +PA + + M+Y+ L + G Sbjct: 263 FIYSDEYCGGIKDG-KRLKACIPGGSSVPIVPANLLLRTVNGEPRYMNYESLADGGFATG 321 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + +G+ IV+D I++ L+ FY HESCGQCTPCREGTGWM ++++++ KG + Sbjct: 322 TMMGSGGFIVLDEDQCIVEHTMTLARFYNHESCGQCTPCREGTGWMYKILKKIEKGEGKM 381 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E Sbjct: 382 EDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFE 422 >gi|284042620|ref|YP_003392960.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684] gi|283946841|gb|ADB49585.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684] Length = 436 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 181/396 (45%), Positives = 255/396 (64%), Gaps = 7/396 (1%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 +RG + +++K L + ++ + SGLRGRGGAGF+ G K SF+P+ D+ YLV NA Sbjct: 23 ARGGYQSLEKALRMTPEEVLQNLLDSGLRGRGGAGFAMGKKVSFLPRGSMDK--YLVCNA 80 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGT KDR++M+ PH LIEG +IA++A GA+ +FIY+RGE+ + L+AA+ E Sbjct: 81 DESEPGTFKDRELMQKSPHMLIEGMIIAAYAAGANRSFIYIRGEYELQAMKLEAALHEAR 140 Query: 145 ASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 +G LG N LG D +I+H GAGAYICGEET LL+SLEGK+G PRLKPPFPAN GLY Sbjct: 141 EAGYLGENI-LGSDHSQSLILHRGAGAYICGEETGLLDSLEGKRGNPRLKPPFPANQGLY 199 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PT +NNVE++A VP I++ Y+ G EN+ GTKL SISG+V P E + + Sbjct: 200 QGPTLINNVETLATVPHIIKMTGVEYAKLGVENSAGTKLISISGNVQRPGNYEIELGMKS 259 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +++ GG G + PGGSS P L + D+D + + GS LG+ A+IV Sbjct: 260 YDIVYGLAGGPEPGR-RVKFWFPGGSSSPVLKPEDLD-LPYDFDSMAKAGSMLGSGAIIV 317 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 +D S ++ +L+ FY+HESCG+CTPCREGT W ++++ER+ KG ++D++ V Sbjct: 318 VDDSVPVMDVALKLAKFYRHESCGKCTPCREGTNWTVKMLERIDKGEGTPMDLDIIASVQ 377 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 I G +C LGDA A P+ ++ FR EE +++ Sbjct: 378 DQIMGNCLCVLGDAMAMPLSSMVAKFRDEFEEYMEE 413 >gi|284106850|ref|ZP_06386293.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3] gi|283830029|gb|EFC34305.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3] Length = 446 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 193/423 (45%), Positives = 266/423 (62%), Gaps = 9/423 (2%) Query: 1 MLTDQDRIFTNLY--GLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57 M T + + TN+ G G SLSD G + + +L + +I VK SGLRGRGG Sbjct: 1 MKTFEKILLTNMERPGYTG-SLSDYEGTGGYKALKTVLGNVPPNDLIEMVKKSGLRGRGG 59 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 AGF TG+KW F+PK P YL NADESEPGT KDR +M +PH ++EG I+ +AIG Sbjct: 60 AGFPTGVKWGFIPKDHPG-PRYLCCNADESEPGTFKDRQLMERDPHQILEGIAISCYAIG 118 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A A+IY+RGEF + L+ A+ E Y +G LGS+ G V + VH GAGAYICGEET Sbjct: 119 AQTAYIYIRGEFRLAAKILERAITEAYQAGHLGSDIYGSGITVHVYVHVGAGAYICGEET 178 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-EN 235 ALLESLEGK+G+PR KPPFPA GLY PT VNNVE++A VP I+ RGA W++ G Sbjct: 179 ALLESLEGKRGKPRTKPPFPATHGLYQKPTVVNNVETLANVPHIVNRGADWFASIGAPPK 238 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + GT++F +SGHV P E ++ TF +LI + GG+R L A IPGG+S P L Sbjct: 239 STGTRVFCLSGHVKRPGNYELPVNATFRDLIYELGGGMRSD-KPLKAFIPGGASAPFLTP 297 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + +D++ + GS G+ + VM+ T ++ A RL F+ HESCG+CTPCREG+ Sbjct: 298 DHVD-VQLDFESVALAGSMSGSGGITVMEEGTSMVWAALRLMEFFYHESCGKCTPCREGS 356 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 W++++++R++ + ++ L E+ +NI GRT+CA GDA P+Q +K +R E Sbjct: 357 SWIVQILQRIMNKQGRPDDLRTLTEICENIGGRTVCAFGDAEIAPVQSTLKYWRNEYEAL 416 Query: 416 IDQ 418 I++ Sbjct: 417 IEE 419 >gi|307328626|ref|ZP_07607799.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger Tu 4113] gi|306885738|gb|EFN16751.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger Tu 4113] Length = 460 Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 199/396 (50%), Positives = 257/396 (64%), Gaps = 12/396 (3%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ +PHYLVVNADESE Sbjct: 41 YEGMRKALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 99 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGTCKD ++ PH+LIEG VIA AI + AFIY+RGE + L AV E Y +G Sbjct: 100 PGTCKDIPLLYANPHSLIEGMVIACHAIRSEHAFIYLRGETVPVLRRLHEAVREAYEAGY 159 Query: 149 LGS----NSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 LG+ KLG D +DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA G Sbjct: 160 LGTAERRRDKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAG 219 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 LY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E + I Sbjct: 220 LYACPTVVNNVESIASVPAILNKGKEWFRSMGSEKSPGFTLYSLSGHVANPGQFEGPLGI 279 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 T +L++ GG+R G L PGGSS P L + +DY+G+ GS LGT A+ Sbjct: 280 TLRQLLDM-SGGMRPG-HRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVGAAGSMLGTKAL 336 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 D +T +++A+ R + FY HESCG+CTPCREGT W+++++ L G + ++D L + Sbjct: 337 QCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDLEAGKGRMDDLDKLAD 396 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ NI G++ CALGD AA PI +K FR E+ I Sbjct: 397 IADNINGKSFCALGDGAASPIFSSLKYFREEYEQHI 432 >gi|223937081|ref|ZP_03628989.1| NADH dehydrogenase (quinone) [bacterium Ellin514] gi|223894362|gb|EEF60815.1| NADH dehydrogenase (quinone) [bacterium Ellin514] Length = 478 Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 195/418 (46%), Positives = 251/418 (60%), Gaps = 36/418 (8%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 +Q KSL D S G + I +VK SGLRGRGGAGFS G+KWSF+ + S Sbjct: 39 IQPKSLPDGKSM-----------SGPEQIREDVKVSGLRGRGGAGFSCGLKWSFVDRK-S 86 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +P YL+ NADESEPGT KDR I+ +PH +IEG +I+ FA A+IY+RGEF Sbjct: 87 GKPIYLICNADESEPGTFKDRQILHKDPHQMIEGMIISCFANDVKLAYIYIRGEFPDGAR 146 Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L A+ E A LG N GYD++I VH GAGAYICGEET L+ESLEGK+ PR+KP Sbjct: 147 ILNKALKEARAKNFLGKNILGSGYDLEIHVHRGAGAYICGEETGLIESLEGKRAYPRIKP 206 Query: 194 P-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 P FPA +GLY CPT VNNVE++ V ++ G S Y+ G NN GT++ SISG V P Sbjct: 207 PYFPAILGLYMCPTIVNNVETLCQVKHVVAMGGSEYAKIGTPNNTGTRIVSISGQVKKPG 266 Query: 253 TVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-------------- 297 E E T +LI + GG+ G L A+IPGGSS AG+ Sbjct: 267 YYEIEVGKATIGQLINEFAGGLHDGR-KLKAIIPGGSSAKVFKAGEKFKLKKKGPDGKDI 325 Query: 298 -----MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 M D+D L GS G+ A+IVMD S DI++A+ LS FY HESCGQCTPCR Sbjct: 326 EQEVDMLDLPYDFDSLMAAGSMSGSGAIIVMDDSVDIVEALANLSEFYAHESCGQCTPCR 385 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFR 409 EG+ WM + + R+ G +K++ + L +++ NI GRTICA G+A +WP+Q + F+ Sbjct: 386 EGSLWMSKALHRMTHGEGRKQDAEYLLKIADNIPGGRTICAFGEACSWPVQSFVGKFK 443 >gi|195119866|ref|XP_002004450.1| GI19938 [Drosophila mojavensis] gi|193909518|gb|EDW08385.1| GI19938 [Drosophila mojavensis] Length = 470 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 185/419 (44%), Positives = 246/419 (58%), Gaps = 22/419 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W +++ G DWI+ E Sbjct: 71 LVDCDRIFQNLYGRHDWRLQGARKRGDWHRTADLIKMGPDWIMGE--------------- 115 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W ++ KV + L+VN E EPGTCKDR+I+RHEPH +IEGC++A A+G Sbjct: 116 ----WEYLRKV-QAKGKVLIVNCAEGEPGTCKDREILRHEPHKIIEGCLLAGCAMGCERC 170 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +YVR F E +LQ A+ E Y GL+G NS + G +DIIV G Y+ GEETAL+ Sbjct: 171 IVYVRNRFYNEACNLQLALAEAYCCGLIGCNSCETGVKLDIIVQRG-DRYLTGEETALVN 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PPF G + P V N E++AV+PT+LRRGA W++ G + N GTK Sbjct: 230 CLMGKLARPRRRPPFLHEQGYFDHPCVVVNTETLAVLPTMLRRGAVWFTSLGSDKNFGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE MS+ +IE+H GG+ GGWDNLLA+ PGG S P + A Sbjct: 290 LFCISGHVVNPCTVEEEMSMPLRNIIERHAGGVCGGWDNLLALWPGGLSTPLMGAACAGQ 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L GS LGTAA+IV+ + D + + F+ ++C QCTPCR+G W+ Sbjct: 350 VLMDFDHLSAAGSELGTAAIIVISKDCDPLLVMQHSIEFFMDQTCKQCTPCRDGAIWLPE 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + VKG A + I+ + + K +E TIC L D+ A LI++FRPLIE RI +Y Sbjct: 410 LFSNFVKGEAVPQMIEFVDIIRKKMENSTICGLCDSQANLAGSLIQHFRPLIEARILEY 468 >gi|302543439|ref|ZP_07295781.1| NADH oxidoreductase (quinone), F subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461057|gb|EFL24150.1| NADH oxidoreductase (quinone), F subunit [Streptomyces himastatinicus ATCC 53653] Length = 459 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 198/391 (50%), Positives = 254/391 (64%), Gaps = 12/391 (3%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K L D +I VK +GLRGRGGAGF TGMKW F+P+ +PHYLVVNADESEPGTCK Sbjct: 46 KALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESEPGTCK 104 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-- 151 D ++ PH LIEG VIA AI + AFIY+RGE + L AV E Y +G LG+ Sbjct: 105 DIPLLYANPHALIEGMVIACHAIRSEHAFIYLRGETVPVLRRLHEAVREAYEAGYLGTAE 164 Query: 152 --NSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 KLG D +DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA GLY CP Sbjct: 165 RRREKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACP 224 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVESIA VP+IL +G W+ G E + G L+S+SGHV P E + IT +L Sbjct: 225 TVVNNVESIASVPSILNKGKEWFRSMGSEKSPGFTLYSLSGHVANPGQFEGPLGITLRQL 284 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 ++ GG+R G L PGGSS P L + +DY+G+ GS LGT A+ D Sbjct: 285 LDM-SGGMRPG-HRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVGAAGSMLGTKALQCFDE 341 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + ++D L +++ NI Sbjct: 342 TTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDVEAGKGRMADLDKLADIADNI 401 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G++ CALGD AA PI +K FR E+ I Sbjct: 402 NGKSFCALGDGAASPIFSSLKYFRAEYEQHI 432 >gi|218461918|ref|ZP_03502009.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli Kim 5] Length = 366 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 183/371 (49%), Positives = 239/371 (64%), Gaps = 7/371 (1%) Query: 57 GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 GAGF TGMKW F+PK + +P YL NADE EPGT KDR IM +PH LIEG ++++AI Sbjct: 1 GAGFPTGMKWGFVPKR-TGKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAI 59 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH-H-GAGAYICGE 174 GA A++Y+RGE++ L+ A+ E +A G LG LG D + VH H GAGAYICGE Sbjct: 60 GAETAYVYIRGEYVTAIRRLEQAIAEAHAKGYLGKRI-LGSDFNFAVHIHCGAGAYICGE 118 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETA+LESLEGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RGA W+ G G + Sbjct: 119 ETAMLESLEGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPD 178 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 + G KL+ +SG V+ P E M I EL+E H GG+ G + AVIPGG S P +P Sbjct: 179 KSPGPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGVLPG-RRIKAVIPGGVSAPVIP 237 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 + MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG Sbjct: 238 EHGLE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREG 296 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 W ++V+ R+ G +++ L + K I G T CALGD AA ++ + +FR Sbjct: 297 LNWTVKVLRRIETGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVA 356 Query: 415 RIDQYHRCNFQ 425 I++ HRC F Sbjct: 357 HIEE-HRCPFH 366 >gi|150026258|ref|YP_001297084.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum JIP02/86] gi|149772799|emb|CAL44283.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum JIP02/86] Length = 455 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 194/404 (48%), Positives = 260/404 (64%), Gaps = 16/404 (3%) Query: 27 GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G + +V+K L+ D ++ EVK SG+RGRGGAGF GMKWSF+ K S +P +LV NAD Sbjct: 25 GGYASVEKALKTLTPDEVVEEVKTSGIRGRGGAGFPAGMKWSFIDK-KSGKPRHLVCNAD 83 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGT KDR +M PH LIEG + +S+A+GA+ ++IY+RGE++ + L+ A+ E A Sbjct: 84 ESEPGTFKDRYLMEFIPHLLIEGMITSSYALGANLSYIYIRGEYMWVYKILERAIAEAKA 143 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG N GYD+D+ V G GAYICGEETAL+ESLEGK+G PR+KPPFPA GL+G Sbjct: 144 AGWLGKNILGTGYDLDLYVQIGGGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWGN 203 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVE+I+ VP I+ + Y+ G + GTKL S SG++ P E M ++ E Sbjct: 204 PTVVNNVETISAVPWIVNNSGAKYAEIGIGRSTGTKLISASGNIKKPGVYEIEMGLSVYE 263 Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA------GQMRGAIMDYDGLKE----MG 312 + +++ GG+ L A++PGGSSVP LPA +M Y+ L + G Sbjct: 264 FMNSDEYLGGMATN-RPLKALVPGGSSVPILPAHLIYKTANNEDRLMSYESLSDGGFPTG 322 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ IV D I++ W S FY HESCGQCTPCREGTGWM +++ R+ G ++ Sbjct: 323 SMLGSGGFIVYDDRACIVRNTWNFSRFYHHESCGQCTPCREGTGWMEKILHRIENGHGRE 382 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +IDLL + IEG TIC LGDAAAWP+ I++FR E + Sbjct: 383 EDIDLLLSIQSKIEGNTICPLGDAAAWPVAAAIRHFREEFEYHV 426 >gi|227874589|ref|ZP_03992752.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|227844798|gb|EEJ54944.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] Length = 481 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 190/414 (45%), Positives = 254/414 (61%), Gaps = 15/414 (3%) Query: 8 IFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G++ +L +RG + ++K ++N VK SGLRGRGGAGF TG+KW Sbjct: 19 ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD + PH L+EG I S AI AFIY+R Sbjct: 79 SFLPPD-DGGPRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE + L AA+ E A+G+LG + I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLGG-------LKITAHAGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GL+ PT +NNVE+I+ V I + +WY+ G E ++G +FSISG Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV +P E IT +L+ +CGGIR G + + GGSS P ++ + Y+ Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHELKFWAV-GGSSAPIFTPAELD-VPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ I R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G Q+ +I+ L ++ I GR CALGDAA P++ I +FR EE YH Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFR---EEFEQGYH 418 >gi|269977611|ref|ZP_06184578.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1] gi|306817873|ref|ZP_07451612.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC 35239] gi|307701356|ref|ZP_07638377.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris FB024-16] gi|269934214|gb|EEZ90781.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1] gi|304649352|gb|EFM46638.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC 35239] gi|307613517|gb|EFN92765.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris FB024-16] Length = 481 Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 190/414 (45%), Positives = 254/414 (61%), Gaps = 15/414 (3%) Query: 8 IFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G++ +L +RG + ++K ++N VK SGLRGRGGAGF TG+KW Sbjct: 19 ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD + PH L+EG I S AI AFIY+R Sbjct: 79 SFLPPD-DGGPRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE + L AA+ E A+G+LG + I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLGG-------LKITAHAGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GL+ PT +NNVE+I+ V I + +WY+ G E ++G +FSISG Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV +P E IT +L+ +CGGIR G + + GGSS P ++ + Y+ Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHELKFWAV-GGSSAPIFTPAELD-VPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ I R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G Q+ +I+ L ++ I GR CALGDAA P++ I +FR EE YH Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFR---EEFEQGYH 418 >gi|213409916|ref|XP_002175728.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces japonicus yFS275] gi|212003775|gb|EEB09435.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces japonicus yFS275] Length = 418 Score = 345 bits (885), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 186/414 (44%), Positives = 250/414 (60%), Gaps = 7/414 (1%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 RIF N+ +S++ + +G + + IL+K + +IN + S LRGRGG+GF TG KW Sbjct: 3 RIFPNVNLNVARSIAFAKKQGRYSKLSDILKKKGEILINTISRSMLRGRGGSGFYTGRKW 62 Query: 67 SFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 + H YLVVNA E EPG+ KDR ++ PHT+IEG ++++ AIGA +I Sbjct: 63 ESVVATAELLKHPMRYLVVNASEGEPGSFKDRYLLASVPHTVIEGSIMSAKAIGASACYI 122 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLES 181 VR E+ +E LQ A++E Y G LG N LG D +DI +H G G YI GEETALLES Sbjct: 123 SVRAEYYKEALHLQEAINEAYEEGYLGKNI-LGTDFSLDIFIHRGEGNYISGEETALLES 181 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK +PR++PPFP G++GC T VNNVE+IA +P IL G W+ G NN GTKL Sbjct: 182 LEGKAAKPRVRPPFPTEHGVFGCATAVNNVETIANIPCILENGDEWFRSLGSPNNYGTKL 241 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ISG V P EE +SI ELIE H GG+ GGWD+L+AV PGG S+ Q Sbjct: 242 FCISGDVRQPNVYEERLSIPLKELIETH-GGVIGGWDSLVAVFPGGPSMGICNKEQCEHM 300 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +MDYD L+++G+GLGTA+VIV++ + +AI S FYK E+C +C CR GT + + Sbjct: 301 LMDYDYLRQIGTGLGTASVIVLNDIDKVFEAILNFSKFYKKETCRKCLACRNGTKIINEL 360 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +E + +G A I L +VS + TIC A + + KNF I+ R Sbjct: 361 LELVREGKATPSVITDLRQVSNYVTKDTICNFSAAPSLLLNSYFKNFPADIQRR 414 >gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 574 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 183/391 (46%), Positives = 254/391 (64%), Gaps = 12/391 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L+ + G + + K + I+ EVK + LRGRGGAGF G+KW F+PK +D+P Sbjct: 187 ALAVAKGNGAYQALAKAGTMKPEEILEEVKKANLRGRGGAGFPAGVKWGFIPKD-TDKPV 245 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR IM ++PH LIEG IA+ AIGA AFIY+RGEF + L+ Sbjct: 246 YLICNADEGEPGTYKDRQIMEYDPHLLIEGMAIAARAIGARQAFIYIRGEFAWIADILEK 305 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ E A G L ++DIIVH GAGAY+CGEETAL+ES+EGK+GQPR++PPFPA Sbjct: 306 AIGEAKADGQLS-------ELDIIVHRGAGAYVCGEETALIESIEGKRGQPRIRPPFPAV 358 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GLYGCPT VNNVE++A VP I+ +GA + +G ENN G KLF ISG VN P E + Sbjct: 359 EGLYGCPTIVNNVETLASVPFIIEKGAEAFKQWGFENNYGFKLFGISGCVNKPGVYEYPL 418 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 ++F+EL+E GG++G L A I GG SV L A +++ MDYD + G+GLG+ Sbjct: 419 GVSFNELMEA-AGGVKG---KLKAAIVGGLSVAILKAEELQDLTMDYDSCAKHGTGLGSG 474 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 ++V+ I + R FY HESCG+C PCREG+ +++++ +L+ G + +I+ + Sbjct: 475 GIMVISEDFSIPELALRTIKFYAHESCGKCVPCREGSYTLVKILHKLLSGQGEAADIEKI 534 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + + G T+C G+A A PIQ +++ FR Sbjct: 535 LGICNTVRGLTLCPTGEAFAVPIQAMVEKFR 565 >gi|319789711|ref|YP_004151344.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans HB-1] gi|317114213|gb|ADU96703.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans HB-1] Length = 421 Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 186/402 (46%), Positives = 250/402 (62%), Gaps = 9/402 (2%) Query: 27 GHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G + + K L E D ++ EVK SGLRGRGGAGF TGMKW F + P + V NAD Sbjct: 24 GGYSALRKALKEMSPDDVVEEVKLSGLRGRGGAGFPTGMKWEFAAADLKE-PKFFVCNAD 82 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP T KDR I+ +PH LIEG +I ++A G +IY+RGE+ ++ L+ A+ E Y Sbjct: 83 EGEPCTFKDRVIIEKDPHALIEGMLIGAYATGCRYGYIYLRGEYPIGKKILERAIAEAYE 142 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 G LG N LG D D+ VH GAGAYICGEETAL+ESLEGK+G+PR+KPPFP N G Sbjct: 143 KGFLGENI-LGTDFSFDLYVHSGAGAYICGEETALIESLEGKRGEPRIKPPFPVNAGYLW 201 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A VP I+ RG WYS G + G KLF +SG V P E M Sbjct: 202 KPTVVNNVETLANVPLIIERGGKWYSQIGSPDCPGPKLFPVSGKVKRPGVYELPMGTPLR 261 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I +H GGI L AV PGG+S L A ++ MD+ L + G+ LG+ A++V+ Sbjct: 262 EIIFEHAGGIVKD-RKLKAVFPGGASSSLLTADEI-DVPMDFPSLAKAGTMLGSGAIMVL 319 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D + ++KA RL F++HESCG+CTPCREGT W++R+M R+ +G+ + ++D + VS+ Sbjct: 320 DETDCVVKAALRLIEFFRHESCGKCTPCREGTDWLVRIMRRIEEGLGTEEDLDTILSVSE 379 Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +E + C LG AA P+ ++ FR E I + RC F+ Sbjct: 380 TME-NSFCGLGMAAHNPVASSVRKFRDEFLEHI-KLGRCPFR 419 >gi|19527833|gb|AAL90031.1| AT08706p [Drosophila melanogaster] Length = 462 Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 179/423 (42%), Positives = 245/423 (57%), Gaps = 23/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ + Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 W F+ + S++ P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P+ V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPSLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 457 Query: 419 YHR 421 Y + Sbjct: 458 YAK 460 >gi|24653817|ref|NP_611027.1| CG8102, isoform B [Drosophila melanogaster] gi|21627150|gb|AAM68529.1| CG8102, isoform B [Drosophila melanogaster] Length = 462 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 179/423 (42%), Positives = 244/423 (57%), Gaps = 23/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ + Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 W F+ + S++ P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 457 Query: 419 YHR 421 Y + Sbjct: 458 YAK 460 >gi|296124095|ref|YP_003631873.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus DSM 3776] gi|296016435|gb|ADG69674.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus DSM 3776] Length = 443 Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 189/432 (43%), Positives = 266/432 (61%), Gaps = 17/432 (3%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 M T + + ++ Q +L ++ G +++ K L + VK SGLRGRGGAGF Sbjct: 1 MSTYEPVLLARIHKEQSHTLDSYLADGGYESFKKALGMTPVEVTTLVKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+F+PK P YL VN DESEPGT +R ++ +PH ++EG I+ +AI ++ Sbjct: 61 PTGLKWTFLPKD-HPGPIYLAVNGDESEPGTFNNRILLEKDPHQVLEGIAISCYAIRSNT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A++Y+R E+ +LQ AV ECY G+ G N G+D+D+ +H GA AYICGEET L+ Sbjct: 120 AYLYLRYEYGAAWRALQKAVAECYERGIFGKNVFGSGFDLDVRLHRGAAAYICGEETGLI 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG---RENN 236 ESLEGK+ PR+KPPFPA GL+ PT VNN+E++A V IL+RG W+ G NN Sbjct: 180 ESLEGKRAWPRIKPPFPAIEGLFRKPTIVNNIETMACVTQILKRGIDWFKSIGVPPDPNN 239 Query: 237 ------RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 G KL+ +SGHVN P E + IT +LIE++ GG+ GG + AV+PGG S+ Sbjct: 240 PRDAGSYGPKLYCLSGHVNKPGCYEVPLGITARQLIEEYGGGVPGG-RGIKAVVPGGISM 298 Query: 291 PCLPAGQMRGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 L ++ +D++G ++G GLGTAAV+V+D T ++ ++ + F+ HESCGQCT Sbjct: 299 GFLAPSELD-TPLDFNGPGKVGCLGLGTAAVVVIDDQTSMVDVVYNTARFFAHESCGQCT 357 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIK 406 PCREGT WM R++ R+ G + ++DLL EVS I G TIC L D A WP++ I+ Sbjct: 358 PCREGTNWMQRILHRIRSGQGRMEDLDLLLEVSGGIGMMPGTTICGLADGAGWPVKNAIR 417 Query: 407 NFRPLIEERIDQ 418 FR EE I Sbjct: 418 KFRSEFEEYIQS 429 >gi|283778529|ref|YP_003369284.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068] gi|283436982|gb|ADB15424.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068] Length = 450 Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 187/406 (46%), Positives = 249/406 (61%), Gaps = 17/406 (4%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + + K+L+ + + VK+SGLRGRGGAGF TG+KW+F+P+ P Y +NADE Sbjct: 27 GGYSALKKVLKMTPNDVKETVKSSGLRGRGGAGFPTGLKWTFLPQN-HPGPIYFCLNADE 85 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 SEPGT +R +M +PH ++EG +IA FA A A+ Y+R E+ E ++ A++ECY + Sbjct: 86 SEPGTFNNRILMEDDPHQVLEGIIIACFATQARAAYFYMRCEYPTAYERVKRAIEECYEA 145 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G LG N GY +DI +H GAGAYICGEET L+ESLEGK+ PR+KPPFPA G + P Sbjct: 146 GYLGENILGSGYTLDIHLHRGAGAYICGEETGLIESLEGKRAWPRIKPPFPAVEGAFRKP 205 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFG---RENN------RGTKLFSISGHVNYPCTVEE 256 T VNNVE+ A V I R G W+ G NN G KL+ +SGHVN P E Sbjct: 206 TVVNNVETCACVTQIFRNGVDWFKSIGIAPDPNNPRDAGSYGPKLYCLSGHVNKPGCYEA 265 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS-GL 315 + IT +LI GG+ G AVIPGG S+ L ++ +D++G + G GL Sbjct: 266 PLGITVKDLINDFGGGVWKG-RKAKAVIPGGISMGLLTGDELH-CPLDFNGPGKFGCLGL 323 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTAAV+VMD T ++ + F+ HESCGQCTPCREGT W R+M R+ G + +++ Sbjct: 324 GTAAVVVMDDQTSMVDFLLNSCRFFSHESCGQCTPCREGTSWATRMMTRIKHGQGRLKDL 383 Query: 376 DLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 DLL E+ + I G TIC L D AAWPI+ IK FR +EE I + Sbjct: 384 DLLAEIGETIGIMPGSTICGLADGAAWPIKNCIKKFRGELEEFIKR 429 >gi|298346123|ref|YP_003718810.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063] gi|304390117|ref|ZP_07372071.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657374|ref|ZP_07910256.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236184|gb|ADI67316.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063] gi|304326599|gb|EFL93843.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491846|gb|EFU81455.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 442 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 183/408 (44%), Positives = 245/408 (60%), Gaps = 12/408 (2%) Query: 8 IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G+ + +L +RG + + K ++ VK SGLRGRGGAGF G+KW Sbjct: 19 ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YL VNADESEPGTCKD + PH LIEG I S AI AF+Y+R Sbjct: 79 SFLPPD-DGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AA+ E +GLLG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT +NNVE+I+ V I + +WY+ G E ++G +FS+SG Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E IT +L+ +CGG+R G D + GGSS P ++ + Y+ Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHDLKFWAV-GGSSAPIFTPAELD-VPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ + R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 G + ++D L ++ I GR CALGDAA P++ I+ FR E+ Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFEK 415 >gi|315654702|ref|ZP_07907608.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC 51333] gi|315491166|gb|EFU80785.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC 51333] Length = 442 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 183/408 (44%), Positives = 245/408 (60%), Gaps = 12/408 (2%) Query: 8 IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G+ + +L +RG + + K ++ VK SGLRGRGGAGF G+KW Sbjct: 19 ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YL VNADESEPGTCKD + PH LIEG I S AI AF+Y+R Sbjct: 79 SFLPPD-DGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AA+ E +GLLG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT +NNVE+I+ V I + +WY+ G E ++G +FS+SG Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E IT +L+ +CGG+R G D + GGSS P ++ + Y+ Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHDLKFWAV-GGSSAPIFTPAELD-VPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ + R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 G + ++D L ++ I GR CALGDAA P++ I+ FR E+ Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFEK 415 >gi|227542298|ref|ZP_03972347.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51866] gi|227181898|gb|EEI62870.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51866] Length = 454 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 188/389 (48%), Positives = 247/389 (63%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 RG + + L +++ + SGLRGRGGAGF G KWSF+P V + +P YLVVN D Sbjct: 44 RGGYQALRTALAMEPKELVDLILDSGLRGRGGAGFPVGRKWSFVP-VDNPKPKYLVVNGD 102 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD ++ PHTL+EG +I+ A + AFIY+RGE + LQAA+ E Y Sbjct: 103 ESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLRGEVVHIARRLQAAIQEAYR 162 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 G G N G V I VH GAGAYICGEETALL+SLEGK+G PRL+PPFPA GLY Sbjct: 163 KGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGKRGHPRLRPPFPAVEGLYAS 222 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP I+R GA WY+ G E ++G ++S+SGHV +P E + IT E Sbjct: 223 PTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLSGHVTHPGQYEAPLGITLRE 282 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 LI+ GGIR G L PGGSS L A + +DY+ L+E GS LGT A+ + D Sbjct: 283 LIDM-AGGIREG-HTLKYFTPGGSSTQMLTAEHLD-VPLDYEALREAGSMLGTKALQIFD 339 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W++++++RL +G + ++D L + + Sbjct: 340 DTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRLERGEGKPGDVDKLISICDH 399 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A + + NFR E Sbjct: 400 IGGRSFCALADGAVACVTSAVANFREEFE 428 >gi|227488703|ref|ZP_03919019.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51867] gi|227091364|gb|EEI26676.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51867] Length = 454 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 188/389 (48%), Positives = 247/389 (63%), Gaps = 5/389 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 RG + + L +++ + SGLRGRGGAGF G KWSF+P V + +P YLVVN D Sbjct: 44 RGGYQALRTALTMEPKELVDLILDSGLRGRGGAGFPVGRKWSFVP-VDNPKPKYLVVNGD 102 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGTCKD ++ PHTL+EG +I+ A + AFIY+RGE + LQAA+ E Y Sbjct: 103 ESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLRGEVVHIARRLQAAIQEAYR 162 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 G G N G V I VH GAGAYICGEETALL+SLEGK+G PRL+PPFPA GLY Sbjct: 163 KGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGKRGHPRLRPPFPAVEGLYAS 222 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVESI+ VP I+R GA WY+ G E ++G ++S+SGHV +P E + IT E Sbjct: 223 PTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLSGHVTHPGQYEAPLGITLRE 282 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 LI+ GGIR G L PGGSS L A + +DY+ L+E GS LGT A+ + D Sbjct: 283 LIDM-AGGIREG-HTLKYFTPGGSSTQMLTAEHLD-VPLDYEALREAGSMLGTKALQIFD 339 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +T +++ R FYKHESCG+CTPCREGT W++++++RL +G + ++D L + + Sbjct: 340 DTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRLERGEGKPGDVDKLISICDH 399 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 I GR+ CAL D A + + NFR E Sbjct: 400 IGGRSFCALADGAVACVTSAVANFREEFE 428 >gi|51892729|ref|YP_075420.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM 14863] gi|51856418|dbj|BAD40576.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM 14863] Length = 425 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 182/400 (45%), Positives = 245/400 (61%), Gaps = 14/400 (3%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 ++G + + K L I+ EVK + LRGRGGAGF G+KWSF+P RP YL VNA Sbjct: 25 AQGGYQALRKALAMEPQAIVEEVKKANLRGRGGAGFPAGVKWSFLPN--DGRPRYLTVNA 82 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DESEPGTC +R ++ PH LIEG +I ++A +FIY+RGEF R E L A+++ Sbjct: 83 DESEPGTCNNRTLIYANPHQLIEGILITAYANRITQSFIYIRGEFKRGAEILMKAIEDAR 142 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 G +G N G+ +I VH GA AYICGEE+ALL SLEG++G+PR+KPPFPA VGLYG Sbjct: 143 RKGYVGQNILGTGFSQEITVHRGASAYICGEESALLNSLEGRRGEPRVKPPFPAVVGLYG 202 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNR----GTKLFSISGHVNYPCTVEESMS 259 CPT +NNVE+I+ VP I++ G WY+ + G K+F++SG V P E M Sbjct: 203 CPTIINNVETISNVPHIIKNGWEWYTKITANPDNPKSCGPKIFTVSGCVQRPGNYELPMG 262 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 + ++IE GG+R G L AV PGGSS P L + MD++ + GS LGTAA Sbjct: 263 VKLRDVIEI-AGGLRPG-RKLKAVQPGGSSTPMLTPDHL-DVPMDFESVAAAGSLLGTAA 319 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 VIV D + D++ + FY HESCGQCTPCREGT W+ RV R+ +G + ++ ++ Sbjct: 320 VIVYDDTVDLVDVALYWARFYSHESCGQCTPCREGTHWLERVFTRIKEGGGTEGDLKMIA 379 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ + G TIC L DAA L+K L E +D+Y Sbjct: 380 DMQTQMAGTTICVLSDAAVAFPASLLK----LFPEELDRY 415 >gi|47194143|emb|CAG14423.1| unnamed protein product [Tetraodon nigroviridis] Length = 281 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 157/231 (67%), Positives = 187/231 (80%), Gaps = 1/231 (0%) Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE E Q A++E YA+GL+G N+ GYD D+ V GAGAYICGEETAL+ESLEG Sbjct: 51 RGEGYNESAKRQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEETALIESLEG 110 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG SW+ GFGRE N GTKLF+I Sbjct: 111 KQGKPRLKPPFPADVGVFGCPTTVANVETVSVAPTICRRGGSWFVGFGRERNSGTKLFNI 170 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHVN+PCTVEE MS+ +LIE+H GG+RGGWDNLLAVIPGGSS P +P +MD Sbjct: 171 SGHVNHPCTVEEEMSVPLKDLIERHAGGVRGGWDNLLAVIPGGSSTPLIPKSVCEEVLMD 230 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +DGL + +GLGTAAVIVMD+STDII+AI RL FYKHESCGQCTPCREG+ Sbjct: 231 FDGLIQAQTGLGTAAVIVMDKSTDIIRAIARLIEFYKHESCGQCTPCREGS 281 >gi|118579072|ref|YP_900322.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118580051|ref|YP_901301.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118581589|ref|YP_902839.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118501782|gb|ABK98264.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] gi|118502761|gb|ABK99243.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] gi|118504299|gb|ABL00782.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] Length = 427 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 190/423 (44%), Positives = 247/423 (58%), Gaps = 8/423 (1%) Query: 5 QDRIFTNL-YGLQGKSLSDSMSRGHWDNVDKILEKGRDWII-NEVKASGLRGRGGAGFST 62 +RIF N +L RG + ++ L+ + + EV ASGLRGRGGAGF T Sbjct: 3 SERIFFNFPVTADSHTLKAYQGRGGYQALENALKTLQPIDVEKEVMASGLRGRGGAGFPT 62 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KWSF+ K YL NADE EPGT KDR I H H LIEG ++A++A+ AF Sbjct: 63 GSKWSFVNKKAPVV--YLCCNADEGEPGTFKDRWIFEHNSHQLIEGMILAAYALNVRNAF 120 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180 IY+RGEF L A+ E Y +G LG N LG + DI V G GAY+CGEE++L Sbjct: 121 IYIRGEFDLSFRRLMDAMSEAYKAGYLGENI-LGSSFSCDIRVMQGGGAYVCGEESSLYT 179 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG KG PR KPPFPA GLY PT VNNVE++A VP I+ GA +S G E + GTK Sbjct: 180 SIEGFKGYPRNKPPFPAVQGLYKAPTVVNNVETLANVPWIMTNGAKAFSAMGTEKHPGTK 239 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F +SGHV P E + +LI + CGGI G + L AVIPGGSS P L + Sbjct: 240 IFGVSGHVKKPGLYELPLGYPLKKLIFEECGGILNGKE-LKAVIPGGSSTPILLPQDVET 298 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A +D + L + LG+ VIV+ +++ + LS FY HESCGQCTPCREG+ WM Sbjct: 299 ANLDAECLSTYRTMLGSGGVIVIAEGVCMVRLLHTLSRFYAHESCGQCTPCREGSAWMND 358 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V G K +++ L ++K I G T+CALGDAA+ P+ I FR + I+ Sbjct: 359 IISRIVAGKGVKGDLESLERITKGIMGNTVCALGDAASMPVINFITKFRAEFDYYIEHGR 418 Query: 421 RCN 423 N Sbjct: 419 SMN 421 >gi|261416516|ref|YP_003250199.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372972|gb|ACX75717.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327301|gb|ADL26502.1| NADH-quinone oxidoreductase, F subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 435 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 180/414 (43%), Positives = 252/414 (60%), Gaps = 5/414 (1%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 ++ T +G + + G + N+ +++ + +I+ V+ S LRGRGGAGF TGMK Sbjct: 6 KVCTQNFGKGAQDIEVYKKLGGYSNISERLFNMSQFELIDYVQRSNLRGRGGAGFPTGMK 65 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSF+P+ + +P Y+VVNADE E GT KD +M +PH LIEG +IA++A+G+ A+IY Sbjct: 66 WSFVPR-GTGKPVYIVVNADEGEGGTFKDHFLMLEDPHRLIEGLIIAAWALGSRAAYIYC 124 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGEF+ E+L A+++ YA+G LG N + DI VH GAGAYICGEETAL+ SLEG Sbjct: 125 RGEFLPCIEALNKALNQAYAAGYLGENICGTKFSFDIFVHRGAGAYICGEETALINSLEG 184 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +KGQPRLKPPFPA G + PT VNNVE+I +P IL S Y+ G GTK+F I Sbjct: 185 QKGQPRLKPPFPAVCGAWKSPTCVNNVETIMSLPWILSHDPSDYAKMGTPRAGGTKVFCI 244 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + +I + GG+ GG L AV+PGGSS L A + A MD Sbjct: 245 SGDVKNPGVYEAPLGTPMMTMINDYAGGVVGG--KLKAVLPGGSSCAPLTAEEAAVATMD 302 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 Y+ L M + G+ A+IV++ + +++ + L FY HESCGQCTPCREGTG + R++ + Sbjct: 303 YECLASMKTMFGSGAMIVINDTHNMVDLLNCLGNFYSHESCGQCTPCREGTGLLHRILNQ 362 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +V G +++L+ +S G TIC L + P+ FR +E I + Sbjct: 363 MVAGNGHDGDVELMQSLSSGFGGVTICPLSISLGGPVSSYTAKFRADFDEYIAK 416 >gi|182412305|ref|YP_001817371.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] gi|177839519|gb|ACB73771.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] Length = 452 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 179/406 (44%), Positives = 243/406 (59%), Gaps = 23/406 (5%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + G ++ + + + +I+EVK SGLRGRGGAGF G+KW + + S +P YL+VN Sbjct: 27 LRNGGYEVMKRAFTRPPQELIDEVKKSGLRGRGGAGFPCGVKWGLVDRK-SGKPIYLIVN 85 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR I+ +PH LIEG +I+ FA A+IY+RGEF L+ A+ E Sbjct: 86 ADESEPGTFKDRYIIHQDPHQLIEGTMISCFANNVQQAYIYIRGEFPHGARILERAIQEA 145 Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF-PANVGL 201 +G N Y +I VH GAGAYICGEET L+ESLEGK+ PR+KPPF PA +G+ Sbjct: 146 REHNFVGKNILGTAYSCEIYVHRGAGAYICGEETGLIESLEGKRAYPRIKPPFFPAVLGV 205 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSI 260 Y CPT VNNVE++ V I G ++ G NN GT++F +SGHV P E E+ + Sbjct: 206 YQCPTIVNNVETLCHVKYIAEVGGEAFAKIGTPNNTGTRIFCVSGHVQRPGYYEFETGKV 265 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ------------------MRGAI 302 T +L+ CGG G AVIPGGSS + G+ + Sbjct: 266 TLGQLLNDVCGGPLPG-RKFKAVIPGGSSAKIMRFGERYKGKRKAGTEMVDYDWGVEDVP 324 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L +G+ G+ VIVMD S ++++A+ ++ FY HESCGQCTPCREG+ WM R+ Sbjct: 325 MDFDSLAMIGTMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWMKRIT 384 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V A++ + LL V+ I GRTICA G+A +WP Q ++ F Sbjct: 385 TRMVHANAREEDAALLKSVADQIPGRTICAFGEACSWPTQSFVQKF 430 >gi|282891845|ref|ZP_06300325.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498278|gb|EFB40617.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 432 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 178/371 (47%), Positives = 235/371 (63%), Gaps = 7/371 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I+ VK S LRGRGGAGF TGMKW F+PK P YLV N+DESEPGT KDR ++ + Sbjct: 41 DALIDLVKQSELRGRGGAGFLTGMKWGFVPK-NPQIPKYLVCNSDESEPGTFKDRLLIEN 99 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV- 159 +PH +IEG ++AS+AIGA AFIY RGEF L+ AV + G LG NS LG V Sbjct: 100 DPHQVIEGIILASYAIGAKLAFIYCRGEFYEGIRHLEKAVQDAKQKGYLG-NSILGSQVS 158 Query: 160 -DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +IIVH GAGAYI GEETALL SLEG + PRLKPPFPA GLYG PT +NNVE+++ V Sbjct: 159 LEIIVHPGAGAYIAGEETALLNSLEGYRATPRLKPPFPAVEGLYGKPTIINNVETLSNVV 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ RG WY G+ N GTK+F +SG V P E + + E++E G + G Sbjct: 219 HIVNRGVEWYKSIGKPKNTGTKIFQVSGQVQKPGCFEFPLGTSLREVLEAAGGMLPG--R 276 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 A PGGSS L + MD++ L S LGTA++IVMD + D++K RL Sbjct: 277 RFKACYPGGSSCALLTERDL-DITMDFEALAARKSALGTASIIVMDDTADMVKVAHRLMQ 335 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 FY++ESCG+CTPCREGT W+++++ER+ G ++ + +V +++E + C L AA Sbjct: 336 FYQNESCGKCTPCREGTRWVVQMLERIEAGKGTIWDLKKIEQVCQHMEVESFCPLAVGAA 395 Query: 399 WPIQGLIKNFR 409 PI ++ F+ Sbjct: 396 PPIVSAMREFK 406 >gi|304311499|ref|YP_003811097.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] gi|301797232|emb|CBL45452.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] Length = 455 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 171/375 (45%), Positives = 241/375 (64%), Gaps = 6/375 (1%) Query: 46 EVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTL 105 E+KASGLRGRGGAGF TG+KWS +P Y+V NADE EPGT KDR +M PH L Sbjct: 70 EIKASGLRGRGGAGFPTGVKWSLIPMGPDAGAKYMVCNADEMEPGTFKDRMLMETNPHQL 129 Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVH 164 +E +++++AI A A+I++RGE+I E L AA+ E +A+G LG N G+ VD++VH Sbjct: 130 VESMIVSAYAIQAKRAYIFLRGEYIEAAERLNAAIQEAHAAGYLGENILGSGWGVDLMVH 189 Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 GAG YICGEETAL+ SLEG++ PR KPPFP GL+G PT VNNVE+++ VP IL RG Sbjct: 190 TGAGRYICGEETALINSLEGRRANPRSKPPFPQIAGLWGRPTIVNNVETVSNVPAILLRG 249 Query: 225 ASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 A W+ G G + GTKL+ +SG V +P E + IT EL+ H GG+R G + ++ Sbjct: 250 ADWFKGLSQGLSGDAGTKLYGVSGRVKHPGLWELPIGITCRELLYNHAGGMREGLE-MVT 308 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 +PGG+S L + A MDYD + + GS LGT ++V+D +I+ + L F+ Sbjct: 309 WLPGGASTDFLMPEHLDLA-MDYDTIMKNGSRLGTGLIMVVDNRHNIVSVVRNLEQFFAR 367 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPI 401 ESCG CTPCR+G W +++++ + G Q +++ L ++++ + G+T CAL A P+ Sbjct: 368 ESCGWCTPCRDGLPWTVKLLQSIEAGQGQAGDLETLDQMTRFLGPGKTFCALAPGAMEPL 427 Query: 402 QGLIKNFRPLIEERI 416 Q +K FRP E+ I Sbjct: 428 QSALKFFRPEFEKGI 442 >gi|149909800|ref|ZP_01898451.1| NuoF2 NADH I CHAIN F [Moritella sp. PE36] gi|149807132|gb|EDM67088.1| NuoF2 NADH I CHAIN F [Moritella sp. PE36] Length = 425 Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 171/384 (44%), Positives = 236/384 (61%), Gaps = 6/384 (1%) Query: 27 GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G + + KIL D +I+ VKAS LRGRGGAGF TG+KWSF+PK + HYL NAD Sbjct: 25 GGYQGLKKILTTYSPDKVIDAVKASNLRGRGGAGFPTGLKWSFVPKD-DGKIHYLCCNAD 83 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EPGT KDR +M +PH +IEG +IA++AI A A+IY+RGE+ + + A+ YA Sbjct: 84 EGEPGTFKDRLLMERDPHRVIEGMIIAAYAIRAEVAYIYIRGEYGLSIDMITQAIKAAYA 143 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 G LG N + ++I VH GAGAYICGEETALLES+EG++GQP+LKPPFPA GLY C Sbjct: 144 KGYLGKNIFNTDFCLNIYVHKGAGAYICGEETALLESIEGRRGQPKLKPPFPAVSGLYDC 203 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+ V I +G W++ G ++ G +LF +SG + P VE M + E Sbjct: 204 PTVINNVETFVCVTHIFAKGVDWFTSIGPDDAPGPRLFGLSGQLQNPGIVELPMGLPLSE 263 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L+ + GG G AVIPGG S P +P + M++ L S +G+AAVI +D Sbjct: 264 LVYDYGGGPLTG--KFKAVIPGGLSAPMIPLAGLD-VKMNFADLATADSMMGSAAVIALD 320 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 + I R++ F+ HESCG+C PCREG W +++ R+ G + +++ L + Sbjct: 321 ETASIPAVGRRIAEFFSHESCGKCAPCREGLPWASKILNRIESGQGRPGDLEQLQVICGG 380 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + CALG AAW I+ +K+F Sbjct: 381 VFNNSFCALGVGAAWAIRATLKHF 404 >gi|320105162|ref|YP_004180753.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644] gi|319752444|gb|ADV64204.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644] Length = 475 Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 182/412 (44%), Positives = 256/412 (62%), Gaps = 12/412 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 G +L +RG + K L D ++N VKAS LRGRGGAGF TG+KWSF+PK Sbjct: 16 NGHTLRVYEARGGYQAARKALTTMSPDDVVNLVKASELRGRGGAGFPTGLKWSFLPK--- 72 Query: 75 DRPHYLV-VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 DR L+ VN DESEP T +R ++ +PH +EG +I+ FA A A++Y+R E+I Sbjct: 73 DRTETLMCVNGDESEPATFNNRLLIERDPHQFLEGILISCFATRATTAYVYLRFEYIAGY 132 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + ++ A+ E A+G LG N G+D+ +++H GAGAYICGEET L+ESLEGK+G PR+K Sbjct: 133 KMMERAIAEAEAAGHLGRNIYGSGFDLKVVLHRGAGAYICGEETGLIESLEGKRGWPRIK 192 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA G + PT VNNVE++ VP I+ RGA W+ G + G KL+ +SGHVN Sbjct: 193 PPFPAVEGAFRKPTVVNNVETLCCVPHIVERGADWFKSIGTPKSYGPKLYCVSGHVNKQV 252 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE + +T +LIE+H GG+ G A +PGG S+ L + +D++ L+ G Sbjct: 253 CVELPLGVTTRQLIEEHAGGVWKG-RKAKAAVPGGISMGLLAESEF-DVPLDFEALRPTG 310 Query: 313 S-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GLGTAAV V+D + II + + F+ HESCGQCTPCREGT W+ + + R+ G + Sbjct: 311 CLGLGTAAVTVLDETMPIIDYLAICARFFAHESCGQCTPCREGTNWLNKTIHRIKNGGGR 370 Query: 372 KREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++D+L ++S+N+ G TIC L D AAWP++ + FR +EE I + Sbjct: 371 LEDLDILEQLSQNMGITPGTTICGLADGAAWPVKNALAKFRGELEEYIRTHQ 422 >gi|226227804|ref|YP_002761910.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] gi|226090995|dbj|BAH39440.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] Length = 439 Score = 328 bits (842), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 173/402 (43%), Positives = 247/402 (61%), Gaps = 4/402 (0%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SL+ +RG + ++ K L + + EV ASGL G GGA F G KW + K+ P Sbjct: 18 SLAAYKARGGYQSLQKALTSMQPTDVTKEVAASGLLGHGGAAFPAGRKWGVI-KLTDGEP 76 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 HY+ +NADE EPGT KDR ++ H PH IEG ++AS+AI AFIY+RGEF L+ Sbjct: 77 HYVCMNADEGEPGTFKDRWLLEHVPHLCIEGLILASYAIMGRHAFIYIRGEFDLPFRRLR 136 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E YA+GLLG N GY +DI+++ GAG+Y+CGE +A+L SLEGKKG PR +PP Sbjct: 137 DAIEEAYAAGLLGENILGTGYSLDIVLYRGAGSYVCGEASAMLASLEGKKGWPRNRPPRL 196 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GLY PT VNNVE++A +P I+ G + G + GT++ SISGH+ P E Sbjct: 197 TVKGLYQRPTVVNNVETLANIPAIIGEGGETFRKVGLPKSPGTQMISISGHLVRPGVYEI 256 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 ++++ I + CGGI GG L VIPGG S L A +++G +D++ GS +G Sbjct: 257 EYGYSWEKFIYEDCGGILGG-RALKCVIPGGVSTKILDANELKGRTLDHNSALAAGSQIG 315 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + +IV+ T +++ + FY HESCGQCTPCREG GWM R+++R+V+G + +ID Sbjct: 316 SGGMIVIAEGTCMVRVARVIQRFYHHESCGQCTPCREGMGWMERILDRIVRGEGRPEDID 375 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LY +S +G TIC+LGD+A + ++ ++R E I Sbjct: 376 RLYHISTANDGTTICSLGDSAGYACSAILDHYRDEFEHFITH 417 >gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8] Length = 639 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/412 (44%), Positives = 256/412 (62%), Gaps = 13/412 (3%) Query: 14 GLQGKSLSDSMSRGH--WDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 G++G D RGH ++ ++ L + +I+EVK SGLRGRGGAGF TG+KWSFMP Sbjct: 222 GVEGSHTLDYY-RGHGGYEAAERALTRLSPAEVIDEVKVSGLRGRGGAGFPTGVKWSFMP 280 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 V R +++ NADESEPG+ KDR I+ +PH LIEG +IA AI A IY+RGE+ Sbjct: 281 PV-DGRQRFILCNADESEPGSFKDRYILEDDPHQLIEGMIIAGHAISATLGVIYIRGEYY 339 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQ 188 L+AA+ E A+GLLG G ++D +I+H GAGAYICGEETAL+ S EG + Sbjct: 340 LGYRRLRAAIAEARAAGLLG-RGLFGTEIDFELILHRGAGAYICGEETALMNSFEGLRAN 398 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PRLKPPFPA +G+YG PTT+NNV ++ V I+ +GA+W++ G E+++GTKL+ ISG V Sbjct: 399 PRLKPPFPAQLGIYGLPTTINNVTTLTSVVHIIGQGAAWFAAIGSEDSKGTKLYQISGPV 458 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMDYDG 307 P E + TF ELI GG A IPGGSS P LP MDY Sbjct: 459 ERPGVYELPLGATFRELIFDLAGGPTMPAK---AFIPGGSSAPMLPFEDAYLDTPMDYGS 515 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLV 366 L E+GS LGT VIV+ ++ AI+ L FY HESCG+CTPCREG W+ ++ ++L+ Sbjct: 516 LAELGSMLGTGGVIVIPEEKCMVSAIYNLVRFYAHESCGKCTPCREGVATWLPKLYQKLL 575 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G+ ++ L+ E++ +++G C L D+ A P++ +FR E +++ Sbjct: 576 AGLGSAGDLTLIEELAHHLKGTAFCLLADSCALPVEASFAHFRSEYEHLVER 627 >gi|15643000|ref|NP_228042.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|4980726|gb|AAD35319.1|AE001707_6 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] Length = 545 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 167/402 (41%), Positives = 245/402 (60%), Gaps = 4/402 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N+ + + + ++R + + K L+ II E+K SGLRGRGGAGF TG+KW Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEIIEEIKRSGLRGRGGAGFPTGLKWE 172 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F K +D+ Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA +IY+RG Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E L+ AV++ Y G LG N G++ D+ + GAGAY+ GEETAL+ES+EGK Sbjct: 232 EYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GTK+FS+ G Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTKVFSLVG 351 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 +V VE M +T +LI K GGI GG L V+ G S +D+D Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + G LG+ ++V D + ++ + F++HESCG+CTPCREGT ++ ++ER+ Sbjct: 410 SYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILERIS 469 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +G +K ++D L E+++N + C LG + P+ ++ NF Sbjct: 470 RGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511 >gi|148269832|ref|YP_001244292.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|147735376|gb|ABQ46716.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] Length = 545 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 166/402 (41%), Positives = 245/402 (60%), Gaps = 4/402 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N+ + + + ++R + + K L+ +I E+K SGLRGRGGAGF TG+KW Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFPTGLKWE 172 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F K +D+ Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA +IY+RG Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E L+ AV++ Y G LG N G++ D+ + GAGAY+ GEETAL+ES+EGK Sbjct: 232 EYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GTK+FS+ G Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTKVFSLVG 351 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 +V VE M +T +LI K GGI GG L V+ G S +D+D Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + G LG+ ++V D + ++ + F++HESCG+CTPCREGT ++ ++ER+ Sbjct: 410 SYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILERIS 469 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +G +K ++D L E+++N + C LG + P+ ++ NF Sbjct: 470 RGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511 >gi|170288518|ref|YP_001738756.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|170176021|gb|ACB09073.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] Length = 545 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 166/402 (41%), Positives = 244/402 (60%), Gaps = 4/402 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N+ + + + ++R + + K L+ +I E+K SGLRGRGGAGF TG+KW Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFPTGLKWE 172 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F K +D+ Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA +IY+RG Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E L+ AV+ Y G LG N G++ D+ + GAGAY+ GEETAL+ES+EGK Sbjct: 232 EYHSSIEILKKAVERAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GTK+FS+ G Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTKVFSLVG 351 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 +V VE M +T +LI K GGI GG L V+ G S +D+D Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + G LG+ ++V D + ++ + F++HESCG+CTPCREGT ++ ++ER+ Sbjct: 410 SYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILERIS 469 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +G +K ++D L E+++N + C LG + P+ ++ NF Sbjct: 470 RGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511 >gi|254670961|emb|CBA07639.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria meningitidis alpha153] Length = 331 Score = 325 bits (833), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 164/310 (52%), Positives = 210/310 (67%), Gaps = 5/310 (1%) Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDV 159 PH LIEG +IA +A+GA + Y+ GE + +AA+++ A+G LG N LG ++ Sbjct: 4 PHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNI-LGSDFEF 62 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ HHG GAYICGEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP Sbjct: 63 ELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSSVPF 122 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+R G ++ G N GTKLF ISGHV P E + F E++ K GG+RGG Sbjct: 123 IIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVL-KMAGGMRGG-KK 180 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L AVIPGGSS P LPA M MDYD + + GS LG+ A+IVMD ++KA+ RLS F Sbjct: 181 LKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVKALERLSYF 240 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y ESCGQCTPCREGTGW+ R++ R+V+G + ++DLL V K + GRTICAL DAA + Sbjct: 241 YYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMEDLDLLDSVGKQMAGRTICALADAAVF 300 Query: 400 PIQGLIKNFR 409 P++ K+FR Sbjct: 301 PVRSFTKHFR 310 >gi|222099432|ref|YP_002534000.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM 4359] gi|221571822|gb|ACM22634.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM 4359] Length = 545 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 168/409 (41%), Positives = 248/409 (60%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ++++ RI N+ + + + ++R + + K L+ + II E+K SGLRGRGGAGF Sbjct: 106 VSEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMKPEEIIEEIKRSGLRGRGGAGF 165 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F K SD+ Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA Sbjct: 166 PTGLKWEFTYKASSDQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGARK 224 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E L+ A+++ Y G LG N G+ D+ + GAGAY+ GEETAL+ Sbjct: 225 GYIYIRGEYYSSIEILKRAIEQAYEYGFLGENILGTGFSFDLKIRLGAGAYVAGEETALI 284 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GT Sbjct: 285 ESIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIILNGADWFRKFGTESSPGT 344 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+ G+V VE M +T +LI K GG+ G L ++ G S Sbjct: 345 KVFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGVEKG--KRLKLVQTGGSAGTFIGPDKL 402 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D + G LG+ ++V D S + + F++HESCG+CTPCREGT + Sbjct: 403 DVPLDFDSYAKYGVSLGSGVILVADESHCAVDLALTVMRFFEHESCGKCTPCREGTRIAV 462 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ER+ +G +K ++DLL +V++N + C LG + P+ ++ NF Sbjct: 463 EILERISRGEGRKEDLDLLRKVAENAGETSFCGLGQSIPVPLLSIVNNF 511 >gi|281412285|ref|YP_003346364.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|281373388|gb|ADA66950.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 545 Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 166/405 (40%), Positives = 247/405 (60%), Gaps = 10/405 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N+ + + + ++R + + K L+ +I E+K SGLRGRGGAGF TG+KW Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFPTGLKWE 172 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F K +D+ Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA +IY+RG Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E L+ A+++ Y G LG N G++ D+ + GAGAY+ GEETAL+ES+EGK Sbjct: 232 EYHSSIEILKKAIEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG +++ GTK+FS+ G Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTDSSPGTKVFSLVG 351 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 +V VE M +T +LI K GG+ GG L V+ G S +D+D Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGVEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409 Query: 307 GLKEMGSGLGTAAVIVMDRS---TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 + G LG+ ++V D + D+ A+ R F++HESCG+CTPCREGT ++ ++E Sbjct: 410 SYAKYGVSLGSGVILVADETHCAVDLALAVMR---FFEHESCGKCTPCREGTRMIVNILE 466 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+ +G +K ++D L E+++N + C LG + P+ ++ NF Sbjct: 467 RISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511 >gi|284009324|emb|CBA76486.1| NADH-quinone oxidoreductase chain F [Arsenophonus nasoniae] Length = 404 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 171/388 (44%), Positives = 238/388 (61%), Gaps = 6/388 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 4 DQVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLLMEQ 63 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH LIEG +I ++A+ A+ +I++RGE+I + L+ A++E A+GLLG N G++ Sbjct: 64 LPHLLIEGMLIGAYALKAYRGYIFLRGEYIEAAKHLRKAIEEAKAAGLLGKNILATGFNF 123 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 124 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 183 Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+ G WY G G+ + GTKL SG VN P E IT E++E + GG+R G Sbjct: 184 IIAHGKEWYLGLSEGKSKDAGTKLMGFSGRVNNPGLWELPFGITAREILEDYAGGMREGL 243 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L A PGG+ L + A MD+D + + GS LGTA + +D +++ L Sbjct: 244 -TLKAWQPGGAGTDFLTEAHLDLA-MDFDSIAKAGSRLGTALAMAVDHKINMVSLTRNLE 301 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W +++++ L +G Q +I+ L ++ + + G+T CA Sbjct: 302 QFFARESCGWCTPCRDGLPWSVKILQALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 361 Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCNF 424 A P+Q IK FR E I Q + N Sbjct: 362 AVEPLQSAIKYFRAEFEAGISQQNLANL 389 >gi|150021053|ref|YP_001306407.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149793574|gb|ABR31022.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 538 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 171/424 (40%), Positives = 257/424 (60%), Gaps = 10/424 (2%) Query: 2 LTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 LT + +I T N+ + K++ + ++ + + K + II E+K SGLRGRGGAGF Sbjct: 103 LTKEVKIVTRNIGKIDPKNIEEYIANDGYFALAKAFKMKPHEIIEEIKESGLRGRGGAGF 162 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F K SD+ Y+V NADE EPGT KDR IM +PH++IE +IA +A+GA Sbjct: 163 PTGLKWEFAFKTQSDQ-KYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATK 221 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E+++ A+ + Y G LG N ++ D+ V GAGAYICGEETALL Sbjct: 222 GYIYIRGEYYGSVENIKKAIKDAYEYGFLGENILNSNFNFDLSVRLGAGAYICGEETALL 281 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG G+PRLKPP+P GL+G PT +NNVE++A VP I+ GA W+ FG EN+ GT Sbjct: 282 ESIEGNAGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAKWFKQFGTENSPGT 341 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F +G++N VE M +T EL+ H GG+ G D L V GG + + + Sbjct: 342 KVFCFTGNLNNRGIVELPMGVTVRELL-VHAGGVSG--DKLKMVQTGGIAGTFIDESKF- 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD + LG+ ++ ++ + ++ + F++HESCG+CTPCREGT ++ Sbjct: 398 DIPLDYDSFAKYSVSLGSGVILGVNNNHCVVDIAKNVMEFFRHESCGKCTPCREGTKMVV 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++++++ K A K +++ L E++ + +C LG + P+ LI NF+ EE +D Sbjct: 458 KILDKMSKLEANKEDLERLVEIANTAKETALCGLGQSFPVPLLSLINNFK---EEFLDHI 514 Query: 420 HRCN 423 N Sbjct: 515 ENKN 518 >gi|254442515|ref|ZP_05055991.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Verrucomicrobiae bacterium DG1235] gi|198256823|gb|EDY81131.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Verrucomicrobiae bacterium DG1235] Length = 454 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 182/408 (44%), Positives = 243/408 (59%), Gaps = 20/408 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ + G +D + K + I++EVK S LRGRGGAGF G+KWSF+ + S +P Sbjct: 23 SIDSYLEHGGYDMLKKAVTMEPQAIMDEVKKSTLRGRGGAGFPCGLKWSFVDRK-SGKPI 81 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV N DESEPGT KDR I+ +PH LIEG +I++FA +FIY+R E + L Sbjct: 82 YLVCNCDESEPGTFKDRQIVHKDPHQLIEGMMISAFANNVAKSFIYIREEMPHGAKILDQ 141 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196 A+ E G +G N GY DI+VH GA AYICGEET L+ESLEGK+ PR+KPP FP Sbjct: 142 AILEAKEKGFVGDNVLGSGYSCDIVVHRGAAAYICGEETGLIESLEGKRANPRIKPPYFP 201 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A +GLY CPT VNNVE++ IL GA ++ GR NN GT+++ +SG V P E Sbjct: 202 AVLGLYNCPTIVNNVETLCNAVHILDMGAEAFTKIGRPNNAGTRIWCVSGGVQRPGYYEV 261 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ---------------MRGA 301 +T EL+ CGG G + A+IPGGSS+ L G+ + Sbjct: 262 G-EMTLGELVYDICGGPLPG-RTIKAIIPGGSSMKILKNGERYTGKNPDGSEYDWGLEDI 319 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DYDG+ GS G+ ++V+D + I A+ L FY HESCGQCTPCREG+ W+ ++ Sbjct: 320 PLDYDGIAAAGSMSGSGGMMVLDDTVSIPGALANLMAFYSHESCGQCTPCREGSLWLKKI 379 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 R+V A+ ++DL+ +V+ I GRTICA G A AWP+Q I F Sbjct: 380 TSRMVHEQARPEDVDLMLDVAGQIAGRTICAFGFAVAWPVQSYIAKFE 427 >gi|217077616|ref|YP_002335334.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] gi|217037471|gb|ACJ75993.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] Length = 537 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 172/417 (41%), Positives = 256/417 (61%), Gaps = 7/417 (1%) Query: 2 LTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +T + +I T N+ + K++ + ++ + + K L + IINE+K SGLRGRGGAGF Sbjct: 103 ITKEYKIVTRNIGKIDPKNIDEYIANDGYFALAKALSMKPEEIINEIKESGLRGRGGAGF 162 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F K +D+ Y+V NADE EPGT KDR IM +PH++IE +IA +A+GA Sbjct: 163 PTGLKWEFAYKTDADQ-KYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATK 221 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E+++ A+++ Y G LG N G++ D+ + GAGAYICGEETALL Sbjct: 222 GYIYIRGEYYGSIENIKKAINDAYEYGFLGENILNSGFNFDLSIRLGAGAYICGEETALL 281 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG G+PRLKPPFP GL+G PT +NNVE++A VP I+ GA W+ G EN+ GT Sbjct: 282 ESIEGHAGRPRLKPPFPPQKGLFGKPTVINNVETLANVPQIILNGAEWFKQIGTENSPGT 341 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F +G++N VE M +T EL+ + GGI GG L V GG + + ++ Sbjct: 342 KVFCFAGNLNNRGIVELPMGVTVKELL-IYAGGISGG--KLKMVQTGGIAGTFIDESKLD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD + G LG+ ++ ++ S ++ + F++HESCG+CTPCREGT + Sbjct: 399 -VPLDYDSFAKYGVSLGSGVILGVNDSHCVVDIAKNVMEFFRHESCGKCTPCREGTKIAV 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++E++ K A +++ L E+S + +C LG + P+ LI NF+ E I Sbjct: 458 EILEKMSKFEATMDDLEHLIEISNVAKEAALCGLGQSFPVPLLSLIDNFKEEFEMHI 514 >gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 597 Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 170/408 (41%), Positives = 251/408 (61%), Gaps = 6/408 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 Q R+ GL +S+ + ++R + + K+L K + +I+ +KASGLRGRGGAGF T Sbjct: 115 QTRVTLRNTGLINPESIEEYIARDGYQALGKVLSKYSPEEVISAIKASGLRGRGGAGFPT 174 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F + S P Y+V NADE +PG DR I+ +PH+++E I +AIGA F Sbjct: 175 GLKWEFTARA-SGNPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAICGYAIGAEKGF 233 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+ +C GLLG N G++ DI + GAGA++CGEETALL S Sbjct: 234 IYVRAEYPLAVQRLETAIGKCLEYGLLGRNIFSTGFNFDIEIRVGAGAFVCGEETALLAS 293 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G+PR KPPFPA GL+G PT +NNVE+ A +P I+ G W+S G EN++GTK+ Sbjct: 294 IEGRRGEPRPKPPFPAQEGLWGKPTVINNVETWANIPPIILNGPEWFSAIGTENSKGTKV 353 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G +N VE M E+I GGI G AV GG S C+PA + Sbjct: 354 FALAGKINNTGLVEVPMGTPLKEIIYDIGGGIPNG-KKFKAVQTGGPSGGCIPAEYLDTP 412 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + DYD L ++G+ +G+ +I++D T ++ F + ESCG+C PCR GT M+ + Sbjct: 413 V-DYDSLVKLGTIMGSGGMIIVDEDTCMVDLAKFFLEFVQEESCGKCAPCRIGTKRMLEI 471 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 MER+V+G + +I+LL E+S+ I+ +C LG A P+ +++FR Sbjct: 472 MERIVEGNGKDGDIELLEELSQGIKSSALCGLGQTAPNPVLSTLRHFR 519 >gi|261820796|ref|YP_003258902.1| NADH dehydrogenase I subunit F [Pectobacterium wasabiae WPP163] gi|261604809|gb|ACX87295.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium wasabiae WPP163] Length = 449 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 173/411 (42%), Positives = 246/411 (59%), Gaps = 7/411 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L D S+ + K L +D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 27 LDDYRSKNGYAAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 86 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M EPH L+EG +I++FA+ A+ +I++RGE+I +L+ Sbjct: 87 YLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 146 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 147 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 206 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 + G++G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P E Sbjct: 207 SAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWE 266 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L + MD++ + + GS + Sbjct: 267 LPFGTTAREILEDYAGGMRDGL-KLKAWQPGGAGTDFLTESHLD-LPMDFEHIAKAGSRM 324 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ L F+ ESCG CTPCR+G W ++++ L G Q +I Sbjct: 325 GTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDI 384 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + L ++ + + G T CA A P+Q IK FR E I + + N + Sbjct: 385 ETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQYLGNLK 435 >gi|227112323|ref|ZP_03825979.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 449 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 169/390 (43%), Positives = 239/390 (61%), Gaps = 6/390 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 QDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 EPH L+EG +I++FA+ A+ +I++RGE+I L+ A++E A+GLLG N G+D Sbjct: 108 QEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGFD 167 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNVP 227 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ GA+WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 228 AIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD++ + + GS +GTA + +D +++ L Sbjct: 288 L-KLKAWQPGGAGTDFLTESHLD-LPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRNL 345 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L KG Q +I+ L ++ + + G T CA Sbjct: 346 EEFFSRESCGWCTPCRDGLPWSVKILRALEKGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405 Query: 396 AAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 A P+Q IK FR E I + + N + Sbjct: 406 GAVEPLQSAIKYFREEFEAGISKQYLGNVK 435 >gi|53804527|ref|YP_113816.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str. Bath] gi|53758288|gb|AAU92579.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str. Bath] Length = 427 Score = 318 bits (816), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 172/403 (42%), Positives = 244/403 (60%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPK-VCSDR 76 +L++ ++ G ++ + K L + + + VK SGLRGRGGAGF TG+KWSF+P + R Sbjct: 17 TLAEYLASGGYEGLKKTLAEFAPLDVQQRVKDSGLRGRGGAGFPTGLKWSFVPMGEGAPR 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YLVVN DE EPG KDR ++ +PH LIEG VIA++AI A+ A++++RGE+ L Sbjct: 77 TKYLVVNGDEMEPGAFKDRLLLEGDPHQLIEGVVIAAYAIQANIAYVFLRGEYRLAAARL 136 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ E A GLLG + G+ +D+ +H AG YICGEETALL SLEGK+ PR KPPF Sbjct: 137 RQAIAEAEAQGLLGEDILGSGFSLDLRLHTSAGRYICGEETALLNSLEGKRANPRAKPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P GL+G PT VNNVE++ +P ILR G WY G R GTK++ +SG V P E Sbjct: 197 PQVSGLFGKPTIVNNVETLCNLPHILRNGVEWYKGLSRTGEPGTKIYGVSGRVRSPGAWE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E+IE+H GG+R G+ L +PGG+S L + MDY + + GS L Sbjct: 257 LPMGTTAREIIEEHAGGMRDGY-RLKGYLPGGASTDFLLPEHLD-IPMDYGSIGKAGSRL 314 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +I++D T ++ + L F+ ESCG CTPCR+G W + ++E L++G + ++ Sbjct: 315 GTGTMILLDDKTCPVQMVLNLERFFAQESCGWCTPCRDGLPWTVSLLEGLIEGRGRPEDL 374 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + L + + G T CAL A P+Q +K+FR E + Sbjct: 375 ETLERLCGLLGPGNTFCALAPGAMEPLQSALKHFRADFERYLQ 417 >gi|7709907|gb|AAB29698.2| NADH:ubiquinone oxidoreductase flavoprotein 1 subunit [Homo sapiens] Length = 257 Score = 318 bits (816), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 169/297 (56%), Positives = 202/297 (68%), Gaps = 41/297 (13%) Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 GRGGAGF TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ Sbjct: 1 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGG 60 Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172 A+ A A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYIC Sbjct: 61 RAMAARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 120 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 GEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFG Sbjct: 121 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 180 Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 RE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH G R PG S Sbjct: 181 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGTDR----------PGHS---- 226 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 G G + DG + KAI RL FYKH SCGQCT Sbjct: 227 --CGDRHGPL---DGHR---------------------KAIARLIEFYKHASCGQCT 257 >gi|320161184|ref|YP_004174408.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] gi|319995037|dbj|BAJ63808.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] Length = 548 Score = 318 bits (815), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 172/418 (41%), Positives = 257/418 (61%), Gaps = 6/418 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAG 59 L + RI G + ++ D + + + K+L + + +I EV+ SGL+GRGGAG Sbjct: 113 LPAEQRIVLERAGVIDPANIEDYILHDGYAALGKVLTSMKPEEVIAEVQKSGLKGRGGAG 172 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSF+ K + Y++ NADESEPGT KDR I+ +PH ++E IA +A+GA Sbjct: 173 FPTGLKWSFVAKAPGTK-KYVICNADESEPGTFKDRVILEGDPHAILEAMAIAGYAVGAD 231 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IYVRGE+ +E L A+ + G LG N ++ +I VH GAGAYICGEETAL Sbjct: 232 EGYIYVRGEYALAQERLAIAIAQAKEYGFLGKNIFGTEFNFEIHVHSGAGAYICGEETAL 291 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ES+EGK+G+PR +PP+P GL+G PT VNNVE++A +P ILR GA WY FG ++ G Sbjct: 292 IESIEGKRGEPRARPPYPTTHGLWGKPTLVNNVETLANIPPILRNGAEWYRKFGTPSSPG 351 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+++I G+VN +E M IT E+I + G++ G LA GGSS +PA + Sbjct: 352 TKVYTILGNVNNTGLIEVPMGITLREVIAIYGRGMKNGRTFKLAQT-GGSSGSVIPA-SL 409 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + MD++ + G LG+ A+++ D T ++ L F++ ESCG+CTPCR GT Sbjct: 410 QDTPMDFESYNKAGVSLGSGALLICDEDTCVVDLAKVLMNFFRRESCGKCTPCRIGTYRA 469 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++++R+ +G +++D L +S+N+ + C LG AA PI+ ++K FR +E I Sbjct: 470 YQILQRISEGQGVLKDLDELLSLSENLVNLSNCGLGQTAATPIKDILKYFRAEVEAHI 527 >gi|157364371|ref|YP_001471138.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314975|gb|ABV34074.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 541 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 162/403 (40%), Positives = 254/403 (63%), Gaps = 5/403 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + K++ + ++R + + ++L++ + + +I+ VK SGLRGRGGAGF TG+KW Sbjct: 113 VLRNVGLIDPKNIDEYIARDGYFALHRVLKEMKPNQVIDWVKESGLRGRGGAGFPTGLKW 172 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 KV +D+ Y+V NADE EPGT KDR IM +PH++IE VI +A+GA +IY+R Sbjct: 173 DLTAKVQADQ-KYVVCNADEGEPGTFKDRLIMEGDPHSVIEAMVICGYAVGATKGYIYIR 231 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ E++Q A+ + Y G LG + G+D D++V GAGAYICGEETALLES+EGK Sbjct: 232 GEYYGSVENIQKAIKDAYEYGFLGKDIMGSGFDFDLVVRLGAGAYICGEETALLESIEGK 291 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PRLKPP+P GL+G PT +NNVE+ A +P I++ W+ FG ++ GTK+FS+ Sbjct: 292 SGRPRLKPPYPPTNGLFGKPTVINNVETFANIPPIIQNDPGWFKSFGTPSSPGTKVFSLV 351 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G+V VE M +T +LI + GG+ GG L V GG++ + ++ A +DY Sbjct: 352 GNVVRRGIVEVPMGVTVRDLIYRFGGGLVGG-KQLYMVQTGGTAGTFVGVDKLDVA-LDY 409 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D K G +G+ ++ M T + +F++HESCG+CTPCREGT ++++ER+ Sbjct: 410 DSFKNHGVSIGSGVILAMSEDTCPVDVALNTMMFFEHESCGKCTPCREGTRLSVQILERM 469 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 KG ++ +++ L +++ + ++C LG + P+ ++ NF Sbjct: 470 SKGQGKEEDLETLRKIAIITQEASLCGLGQSINVPLLSILNNF 512 >gi|238920563|ref|YP_002934078.1| NADH dehydrogenase I subunit F [Edwardsiella ictaluri 93-146] gi|238870132|gb|ACR69843.1| NADH oxidoreductase [Edwardsiella ictaluri 93-146] Length = 448 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 234/381 (61%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 47 QDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNVRYLLCNADEMEPGTYKDRLLME 106 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH L+EG +I ++A+ A+ +I++RGE++R E+L+ A+DE A+GLLG N G+D Sbjct: 107 QLPHLLVEGMLIGAYALKAYRGYIFLRGEYVRAAENLRRAIDEARAAGLLGKNIFGSGFD 166 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 167 FDLFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASAGVWGKPTCVNNVETLCNVP 226 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G +WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 227 AIIEHGVAWYQGLSAGKSQDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 286 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD+ + + GS LGTA + +D +++ + L Sbjct: 287 L-KLKAWQPGGAGTDFLTEAHL-DLPMDFASIGKAGSRLGTALAMAVDHEINMVSLLCNL 344 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G T CA Sbjct: 345 ESFFARESCGWCTPCRDGLPWGLKILRALERGEGQPGDIETLEQLCRLLAPGHTFCAHAP 404 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+Q IK FR E I Sbjct: 405 GAVEPLQSAIKYFRGEFEAGI 425 >gi|260598701|ref|YP_003211272.1| NADH dehydrogenase I subunit F [Cronobacter turicensis z3032] gi|260217878|emb|CBA32426.1| NADH-quinone oxidoreductase subunit F [Cronobacter turicensis z3032] Length = 445 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/402 (42%), Positives = 239/402 (59%), Gaps = 5/402 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ ++ K L D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E L+ Sbjct: 86 YLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRR 145 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + G++G PT VNNVE++ VP IL G WY G ++GTKL SG V P E Sbjct: 206 SSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGVWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E++ GG+R G A PGG+ L + M++ + + GS LGT Sbjct: 266 FGTTAREILEEYAGGMRDGL-TFKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I+ Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425 >gi|297267279|ref|XP_002799509.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Macaca mulatta] Length = 335 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/217 (68%), Positives = 174/217 (80%) Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ Sbjct: 108 GRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPL 167 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIV Sbjct: 168 KELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIV 227 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 MDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+G AQ EID L+E+S Sbjct: 228 MDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEIS 287 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 K IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 288 KQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/93 (52%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLV-VNADESEPGTCK 93 TG+KWSFM K RP + V P C+ Sbjct: 95 TGLKWSFMNKPSDGRPTTVANVETVAVSPTICR 127 >gi|156933126|ref|YP_001437042.1| NADH dehydrogenase I subunit F [Cronobacter sakazakii ATCC BAA-894] gi|156531380|gb|ABU76206.1| hypothetical protein ESA_00936 [Cronobacter sakazakii ATCC BAA-894] Length = 445 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 167/380 (43%), Positives = 231/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRMLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I E L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY G ++GTKL SG V P E T E++E++ GG+R G Sbjct: 228 ILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFRDEFEAGIKQ 425 >gi|239616592|ref|YP_002939914.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] gi|239505423|gb|ACR78910.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] Length = 539 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 168/418 (40%), Positives = 253/418 (60%), Gaps = 7/418 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +T ++RI G + K++ + ++ + + K L+ + +I EVK SGLRGRGGAGF Sbjct: 106 ITKEERIVLKRAGEINPKNIDEYIAFDGYQGLAKALQMSPEDVIKEVKESGLRGRGGAGF 165 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F KV + + Y++ NADE EPGT KDR IM +PH++IEG I ++A+GA+ Sbjct: 166 PAGLKWEFTYKVDA-KEKYVICNADEGEPGTFKDRLIMEGDPHSVIEGMAITAYAVGANK 224 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IY+RGE+ +L+ A+ + Y GLLG N LG + D+ V GAGAY+CGEETAL Sbjct: 225 GYIYIRGEYFESVNNLRIAISQAYDYGLLGENI-LGTNFSFDLSVRLGAGAYVCGEETAL 283 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ES+EG G+PRLKPP+P GLY PT VNNVE+ A VP I+ GA W+ G E++ G Sbjct: 284 IESIEGHAGRPRLKPPYPPVKGLYQKPTVVNNVETFANVPWIVLNGAEWFRSIGTESSPG 343 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK++S+ G++ E M T ELI KH GGI G NL V GG++ + ++ Sbjct: 344 TKVYSLCGNLVRRGITEVPMGTTVAELIYKHGGGIANGR-NLKMVQTGGAAGTFIKPDEI 402 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D++ ++ G LG+ ++ +D + + L F+ HESCG+C+PCREGT + Sbjct: 403 NTP-LDFNSFRDYGVALGSGVILAVDDTHCAVDVALNLMEFFAHESCGKCSPCREGTKLI 461 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +++ + KG K I LY++++ ++ C LG + P++ L+ FR IE I Sbjct: 462 VNILKEISKGRGTKEMIGQLYDIAETMQNSAFCGLGQSVPVPLRSLLDRFRDEIEAHI 519 >gi|50121947|ref|YP_051114.1| NADH dehydrogenase I subunit F [Pectobacterium atrosepticum SCRI1043] gi|49612473|emb|CAG75923.1| NADH-quinone oxidoreductase chain F [Pectobacterium atrosepticum SCRI1043] Length = 449 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 168/390 (43%), Positives = 237/390 (60%), Gaps = 6/390 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 QDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 EPH L+EG +I++FA+ A+ +I++RGE+I L+ A++E A+GLLG N G+D Sbjct: 108 QEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGFD 167 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ GA+WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 228 AIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD++ + + GS +GTA + +D +++ L Sbjct: 288 L-KLKAWQPGGAGTDFLTESHLD-LPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRNL 345 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L G Q +I+ L ++ + + G T CA Sbjct: 346 EEFFSRESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405 Query: 396 AAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 A P+Q IK FR E I + + N + Sbjct: 406 GAVEPLQSAIKYFREEFEAGISKQYLGNLK 435 >gi|253689144|ref|YP_003018334.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755722|gb|ACT13798.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 449 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 168/390 (43%), Positives = 238/390 (61%), Gaps = 6/390 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 QDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 EPH L+EG +I++FA+ A+ +I++RGE+I L+ A++E A+GLLG N G+D Sbjct: 108 QEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGFD 167 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNVP 227 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ GA+WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 228 AIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD++ + + GS +GTA + +D +++ L Sbjct: 288 L-KLKAWQPGGAGTDFLTENHLD-LPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRNL 345 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L G Q +I+ L ++ + + G T CA Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405 Query: 396 AAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 A P+Q IK FR E I + + N + Sbjct: 406 GAVEPLQSAIKYFREEFEAGISKQYLGNVK 435 >gi|431020|gb|AAA03537.1| NADH dehydrogenase [Escherichia coli] Length = 445 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 166/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ RL +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRRLERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|397903|emb|CAA48365.1| NADH dehydrogenase I, subunit nuoF [Escherichia coli] Length = 445 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 166/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ RL +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRRLERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|283786352|ref|YP_003366217.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium ICC168] gi|282949806|emb|CBG89429.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium ICC168] Length = 445 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 171/402 (42%), Positives = 238/402 (59%), Gaps = 5/402 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ ++ K L D I+N+VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LDEYRSKNGYEGARKALTALSPDEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E+L+ Sbjct: 86 YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRR 145 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G++G PT VNNVE++ VP IL G WY + + GTKL SG V P E Sbjct: 206 TSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E + GG+R G A PGG+ L + M+++ + + GS LGT Sbjct: 266 FGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I+ Sbjct: 324 ALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIRQ 425 >gi|77164632|ref|YP_343157.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC 19707] gi|254434237|ref|ZP_05047745.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] gi|76882946|gb|ABA57627.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707] gi|207090570|gb|EDZ67841.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] Length = 429 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 165/387 (42%), Positives = 238/387 (61%), Gaps = 8/387 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 ++ EVK S LRGRGGAGF TG+KWSF+P+ + RP YL+ NADE EPGT KDR +M + Sbjct: 47 VLQEVKESNLRGRGGAGFPTGLKWSFVPRGDDAPRPKYLIANADEMEPGTFKDRLLMEGD 106 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDV 159 PH L+EG ++AS+AI A A+I++R E+ + L+ A+ E Y LG N LG + + Sbjct: 107 PHQLLEGMILASYAIQAEVAYIFLRAEYWLAAQRLKKAIAEAYQVNYLGKNL-LGSTFSL 165 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ +H AG YICGEETALL +LEGK+ PR KPP+P GL+G PT VNNVE++ VP Sbjct: 166 ELHLHTSAGRYICGEETALLNALEGKRAIPRAKPPYPQVSGLWGQPTVVNNVETLCNVPH 225 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ RGA+WY R + GTK++ SG V +P E M E++E+H GG++ G+ Sbjct: 226 IIARGAAWYQNLSRSEDGGTKIYGASGRVKHPGAWELPMGTPIREILEEHAGGMKDGF-Q 284 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L +PGG+S L + MDYD ++ GS LGT ++I++D T + + L F Sbjct: 285 LRGFLPGGASTDFLTEEHLE-VPMDYDSVQAAGSRLGTGSLIILDDRTCPVDMVRNLEHF 343 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W+ +++ + +G Q +++ L ++ + G T CA A Sbjct: 344 FAQESCGWCTPCRDGLPWVEKILLGIEQGQGQPEDLEYLMMHTRLLGPGHTFCAHAPGAM 403 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425 P+Q +K F+ E+ I Q RC F+ Sbjct: 404 EPLQSALKYFKTDFEQHIHQ-QRCPFK 429 >gi|296103965|ref|YP_003614111.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058424|gb|ADF63162.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295098077|emb|CBK87167.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 445 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 167/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N VK SGL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DDIVNAVKESGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I E+L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRRAIAEATEAGLLGKNILGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY G + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ + +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRAIERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFRDEFEAGIKQ 425 >gi|317492619|ref|ZP_07951046.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919369|gb|EFV40701.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 453 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 171/402 (42%), Positives = 243/402 (60%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ +D ++N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 31 LDEYRSKSGYQGAEKALKGMAQDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 90 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +IA+FA+ ++ +I++RGE++ +L+ Sbjct: 91 YLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIAAFALKSYRGYIFLRGEYVEAAVNLRK 150 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 151 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 210 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 + G++G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V P E Sbjct: 211 SSGVWGKPTCVNNVETLCNVPAIIEHGVDWYKGLSAGKSEDAGTKLMGFSGRVKNPGLWE 270 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L G MD+ + + GS L Sbjct: 271 LPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFL-TGDHLDLPMDFASIGKAGSRL 328 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I Sbjct: 329 GTALAMAVDNEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 388 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L ++ +++ G+T CA A P+Q IK FR E I Sbjct: 389 ETLEQLCRHLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 430 >gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 172/412 (41%), Positives = 242/412 (58%), Gaps = 8/412 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 SF + D P Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY Sbjct: 256 SFTRPL--DVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYC 313 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EG Sbjct: 314 RGEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEG 373 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 374 KRGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQI 433 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 GHV P VE IT ELI+ + GG+R G + G S+ P + +D Sbjct: 434 IGHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVD 491 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 + G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R Sbjct: 492 F-GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTR 550 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 551 IWEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 172/412 (41%), Positives = 242/412 (58%), Gaps = 8/412 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 SF + D P Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY Sbjct: 256 SFTRPL--DVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYC 313 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EG Sbjct: 314 RGEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEG 373 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 374 KRGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQI 433 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 GHV P VE IT ELI+ + GG+R G + G S+ P + +D Sbjct: 434 IGHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVD 491 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 + G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R Sbjct: 492 F-GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTR 550 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 551 IWEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|261340672|ref|ZP_05968530.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC 35316] gi|288317086|gb|EFC56024.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC 35316] Length = 445 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 167/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I E+L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRRAIAEATEAGLLGKNILGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY G + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|269139726|ref|YP_003296427.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Edwardsiella tarda EIB202] gi|267985387|gb|ACY85216.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Edwardsiella tarda EIB202] gi|304559593|gb|ADM42257.1| NADH-ubiquinone oxidoreductase chain F [Edwardsiella tarda FL6-60] Length = 448 Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 233/381 (61%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 47 QDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNVRYLLCNADEMEPGTYKDRLLME 106 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH L+EG +I ++A+ A+ +I++RGE++ E+L+ A+DE A+GLLG N G+D Sbjct: 107 QLPHLLVEGMLIGAYALKAYRGYIFLRGEYVTAAENLRRAIDEARAAGLLGKNIFGSGFD 166 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP Sbjct: 167 FDLFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASAGAWGKPTCVNNVETLCNVP 226 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ GA+WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 227 AIVEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 286 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD+ + + GS LGTA + +D +++ + L Sbjct: 287 L-KLKAWQPGGAGTDFLTEAHL-DLPMDFASIGKAGSRLGTALAMAVDHEINMVSLLCNL 344 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G T CA Sbjct: 345 ESFFARESCGWCTPCRDGLPWGLKILRALERGEGQPGDIETLEQLCRLLAPGHTFCAHAP 404 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+Q IK FR E I Sbjct: 405 GAVEPLQSAIKYFRDEFEAGI 425 >gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 172/412 (41%), Positives = 242/412 (58%), Gaps = 8/412 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 SF + D P Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY Sbjct: 256 SFTRPL--DVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYC 313 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EG Sbjct: 314 RGEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEG 373 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 374 KRGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQI 433 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 GHV P VE IT ELI+ + GG+R G + G S+ P + +D Sbjct: 434 IGHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVD 491 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 + G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R Sbjct: 492 F-GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTR 550 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 551 IWEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|238784996|ref|ZP_04628994.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC 43970] gi|238714112|gb|EEQ06126.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC 43970] Length = 439 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 169/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 41 VVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D ++ Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGSGFDFEL 160 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 399 EPLQSAIKYFREEFEAGI 416 >gi|270262810|ref|ZP_06191081.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13] gi|270043494|gb|EFA16587.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13] Length = 450 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 234/387 (60%), Gaps = 6/387 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 49 DEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 108 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 109 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDF 168 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 169 ELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 228 Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 IL G WY G G+ + GTKL SG V P E IT E++E + GG+R G Sbjct: 229 ILANGIEWYQGINGGKSKDAGTKLMGFSGRVKNPGVWELPFGITAREILEDYAGGMRDGL 288 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L Sbjct: 289 -RFKAWQPGGAGTDFLTADHLD-LPMDFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLE 346 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L G Q +I+ L ++ +++ G+T CA Sbjct: 347 EFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRSLGPGKTFCAHAPG 406 Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCN 423 A P+Q IK FR E I H N Sbjct: 407 AVEPLQSAIKYFREEFEAGIAVKHFSN 433 >gi|146419677|ref|XP_001485799.1| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC 6260] Length = 314 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 150/249 (60%), Positives = 183/249 (73%), Gaps = 4/249 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +IL+KG WII+EVK SGLRGRGGAGF Sbjct: 63 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++ A+ A Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GLLG N+ GYD D+ +H G GAY+CGEETA Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG W++ FGRE N Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302 Query: 238 GTKLFSISG 246 GTKLF ISG Sbjct: 303 GTKLFCISG 311 >gi|322831988|ref|YP_004212015.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602] gi|321167189|gb|ADW72888.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602] Length = 453 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 169/385 (43%), Positives = 233/385 (60%), Gaps = 6/385 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 54 IVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQMP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ ++ +I++RGE+I +L+ A+ E +GLLG N G+D ++ Sbjct: 114 HLLVEGMLISAFALKSYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNILGTGFDFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP IL Sbjct: 174 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVPAIL 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ + GTKL SG V P E T E++E++ GG+R G Sbjct: 234 EHGVDWYKGISAGKSEDAGTKLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD+ + + GS LGTA + +D ++ + L F Sbjct: 293 FKAWQPGGAGTDFLTADHL-DLPMDFASIGKAGSRLGTALAMAVDNEIGMVPLVRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 352 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRQLGPGKTFCAHAPGAV 411 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCN 423 P+Q IK FR E I + H N Sbjct: 412 EPLQSAIKYFREEFEAGIAKQHYNN 436 >gi|307297602|ref|ZP_07577408.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2] gi|306916862|gb|EFN47244.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2] Length = 540 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 165/404 (40%), Positives = 246/404 (60%), Gaps = 6/404 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N + ++L + ++ + + K L + +I E+K S LRGRGGAGF TG+KW Sbjct: 114 VLRNAGSIDPRNLEEYIALDGYQGLAKALRMTPEEVIEELKKSNLRGRGGAGFPTGLKWE 173 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F KV SD +++ NADE EPGT KDR IM +PH++IEG VIA +A+GA +IY+RG Sbjct: 174 FTQKVRSDE-KFVICNADEGEPGTFKDRLIMEGDPHSVIEGMVIAGYAVGASKGYIYIRG 232 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ SL+ A+ + Y GLLG S LG + D+ V GAGAY+CGEETAL+ES+EGK Sbjct: 233 EYFESVSSLRDAISKAYEYGLLG-QSVLGTEFSFDLSVRLGAGAYVCGEETALIESIEGK 291 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PRLKPP+P GLYG PT VNNVE+ A VP I+ +GA W+ G +++ GTK+FS+ Sbjct: 292 SGRPRLKPPYPPVSGLYGKPTVVNNVETFACVPPIIDKGAGWFRSIGTQSSPGTKVFSLC 351 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + VE M + +L+ K GGI G L V GG++ + +M A +D+ Sbjct: 352 GDLVKRGIVEVPMGTSVRDLVHKFGGGIPKGR-TLKMVQTGGAAGTFIKPEEMD-AELDF 409 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D K+ G+ LG+ ++ +D + + L F+ HESCG+C+PCREGT ++ +++ Sbjct: 410 DSFKKSGASLGSGVILAIDETHCAVDIAKNLMEFFAHESCGKCSPCREGTRVIVYILDEF 469 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 KG + LY++S+ +E + C LG + P++ ++ F+ Sbjct: 470 SKGRGTVEMFNQLYDISETMEESSFCGLGQSVPIPLRSILDRFK 513 >gi|190345480|gb|EDK37372.2| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC 6260] Length = 314 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 150/249 (60%), Positives = 183/249 (73%), Gaps = 4/249 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +IL+KG WII+EVK SGLRGRGGAGF Sbjct: 63 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++ A+ A Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GLLG N+ GYD D+ +H G GAY+CGEETA Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG W++ FGRE N Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302 Query: 238 GTKLFSISG 246 GTKLF ISG Sbjct: 303 GTKLFCISG 311 >gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 170/411 (41%), Positives = 241/411 (58%), Gaps = 6/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF + + Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY R Sbjct: 256 SFTRPLQVPQ-KYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EGK Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P VE IT ELI+ + GG+R G + G S+ P + +D+ Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVDF 492 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R+ Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|300948572|ref|ZP_07162665.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1] gi|300451920|gb|EFK15540.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1] Length = 445 Score = 315 bits (807), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 166/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I+SFA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISSFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|26248671|ref|NP_754711.1| NADH dehydrogenase I subunit F [Escherichia coli CFT073] gi|91211576|ref|YP_541562.1| NADH dehydrogenase I subunit F [Escherichia coli UTI89] gi|117624473|ref|YP_853386.1| NADH dehydrogenase I subunit F [Escherichia coli APEC O1] gi|170767289|ref|ZP_02901742.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii TW07627] gi|215487497|ref|YP_002329928.1| NADH dehydrogenase I subunit F [Escherichia coli O127:H6 str. E2348/69] gi|218559197|ref|YP_002392110.1| NADH dehydrogenase I subunit F [Escherichia coli S88] gi|218690444|ref|YP_002398656.1| NADH dehydrogenase I subunit F [Escherichia coli ED1a] gi|227887340|ref|ZP_04005145.1| NADH dehydrogenase I subunit F [Escherichia coli 83972] gi|237704758|ref|ZP_04535239.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|300983379|ref|ZP_07176563.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1] gi|301049037|ref|ZP_07196022.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1] gi|306814605|ref|ZP_07448767.1| NADH dehydrogenase I subunit F [Escherichia coli NC101] gi|312967582|ref|ZP_07781797.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75] gi|331647939|ref|ZP_08349031.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605] gi|26109076|gb|AAN81279.1|AE016763_238 NADH dehydrogenase I chain F [Escherichia coli CFT073] gi|91073150|gb|ABE08031.1| NADH dehydrogenase I chain F [Escherichia coli UTI89] gi|115513597|gb|ABJ01672.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli APEC O1] gi|170123623|gb|EDS92554.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii TW07627] gi|215265569|emb|CAS09972.1| NADH: ubiquinone oxidoreductase, chain F [Escherichia coli O127:H6 str. E2348/69] gi|218365966|emb|CAR03710.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli S88] gi|218428008|emb|CAR08929.2| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli ED1a] gi|222034040|emb|CAP76781.1| NadH-quinone oxidoreductase subunit F [Escherichia coli LF82] gi|226901124|gb|EEH87383.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|227835690|gb|EEJ46156.1| NADH dehydrogenase I subunit F [Escherichia coli 83972] gi|281179371|dbj|BAI55701.1| NADH dehydrogenase I chain F [Escherichia coli SE15] gi|284922272|emb|CBG35357.1| NADH-quinone oxidoreductase subunit F [Escherichia coli 042] gi|294492366|gb|ADE91122.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli IHE3034] gi|300299146|gb|EFJ55531.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1] gi|300408545|gb|EFJ92083.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1] gi|305851999|gb|EFM52451.1| NADH dehydrogenase I subunit F [Escherichia coli NC101] gi|307554346|gb|ADN47121.1| NADH dehydrogenase I chain F [Escherichia coli ABU 83972] gi|307626180|gb|ADN70484.1| NADH dehydrogenase I subunit F [Escherichia coli UM146] gi|312287779|gb|EFR15684.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75] gi|312946902|gb|ADR27729.1| NADH dehydrogenase I subunit F [Escherichia coli O83:H1 str. NRG 857C] gi|315285916|gb|EFU45354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 110-3] gi|315292243|gb|EFU51595.1| NADH oxidoreductase, F subunit [Escherichia coli MS 153-1] gi|315298117|gb|EFU57386.1| NADH oxidoreductase, F subunit [Escherichia coli MS 16-3] gi|320196151|gb|EFW70775.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli WV_060327] gi|323187991|gb|EFZ73286.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli RN587/1] gi|323944797|gb|EGB40863.1| NADH oxidoreductase [Escherichia coli H120] gi|323952077|gb|EGB47951.1| NADH oxidoreductase [Escherichia coli H252] gi|323956050|gb|EGB51803.1| NADH oxidoreductase [Escherichia coli H263] gi|324006666|gb|EGB75885.1| NADH oxidoreductase, F subunit [Escherichia coli MS 57-2] gi|330912109|gb|EGH40619.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli AA86] gi|331043663|gb|EGI15801.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605] Length = 445 Score = 315 bits (807), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 166/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK SGL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|320178743|gb|EFW53706.1| NADH-ubiquinone oxidoreductase chain F [Shigella boydii ATCC 9905] Length = 445 Score = 315 bits (807), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 5/402 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ ++ K L + D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LDEYRSKNGYEGALKALTRLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I +L+ Sbjct: 86 YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G++G PT VNNVE++ VP IL G WY + + GTKL SG V P E Sbjct: 206 TSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E + GG+R G A PGG+ L + M+++ + + GS LGT Sbjct: 266 FGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I+ Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|310768161|gb|ADP13111.1| NADH dehydrogenase I chain F [Erwinia sp. Ejp617] Length = 446 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 165/375 (44%), Positives = 231/375 (61%), Gaps = 4/375 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I++ VK SGL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E A+GLLG N G+D Sbjct: 108 MPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATAAGLLGKNILGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE+++ VP Sbjct: 168 ELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLSNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY G ++ GTK+ SG V P E T E++E++ GG+R G Sbjct: 228 ILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L Q M++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L + Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERKEGQPGDIETLLQLCRQLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIE 413 P+Q IK FR E Sbjct: 406 EPLQSAIKYFREEFE 420 >gi|22125529|ref|NP_668952.1| NADH dehydrogenase I subunit F [Yersinia pestis KIM 10] gi|45442151|ref|NP_993690.1| NADH dehydrogenase I subunit F [Yersinia pestis biovar Microtus str. 91001] gi|108808038|ref|YP_651954.1| NADH dehydrogenase I subunit F [Yersinia pestis Antiqua] gi|108812308|ref|YP_648075.1| NADH dehydrogenase I subunit F [Yersinia pestis Nepal516] gi|145599241|ref|YP_001163317.1| NADH dehydrogenase I subunit F [Yersinia pestis Pestoides F] gi|149365543|ref|ZP_01887578.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125] gi|153948766|ref|YP_001400436.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP 31758] gi|162418531|ref|YP_001606301.1| NADH dehydrogenase I subunit F [Yersinia pestis Angola] gi|165925465|ref|ZP_02221297.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937656|ref|ZP_02226218.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008538|ref|ZP_02229436.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213813|ref|ZP_02239848.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399380|ref|ZP_02304904.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422281|ref|ZP_02314034.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424755|ref|ZP_02316508.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023805|ref|YP_001720310.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis YPIII] gi|218929637|ref|YP_002347512.1| NADH dehydrogenase I subunit F [Yersinia pestis CO92] gi|229838093|ref|ZP_04458252.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895292|ref|ZP_04510466.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides A] gi|229898653|ref|ZP_04513798.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. India 195] gi|229902652|ref|ZP_04517769.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516] gi|270490166|ref|ZP_06207240.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27] gi|294504365|ref|YP_003568427.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003] gi|21958428|gb|AAM85203.1|AE013766_6 NADH dehydrogenase I chain F [Yersinia pestis KIM 10] gi|45437015|gb|AAS62567.1| NADH dehydrogenase I chain F [Yersinia pestis biovar Microtus str. 91001] gi|108775956|gb|ABG18475.1| NADH dehydrogenase I chain F [Yersinia pestis Nepal516] gi|108779951|gb|ABG14009.1| NADH dehydrogenase I chain F [Yersinia pestis Antiqua] gi|115348248|emb|CAL21176.1| NADH dehydrogenase I chain F [Yersinia pestis CO92] gi|145210937|gb|ABP40344.1| NADH dehydrogenase I chain F [Yersinia pestis Pestoides F] gi|149291956|gb|EDM42030.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125] gi|152960261|gb|ABS47722.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis IP 31758] gi|162351346|gb|ABX85294.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis Angola] gi|165914406|gb|EDR33021.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922574|gb|EDR39725.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992920|gb|EDR45221.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166204987|gb|EDR49467.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958787|gb|EDR55808.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051884|gb|EDR63292.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056637|gb|EDR66406.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750339|gb|ACA67857.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis YPIII] gi|229680099|gb|EEO76198.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516] gi|229688201|gb|EEO80272.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. India 195] gi|229694459|gb|EEO84506.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701778|gb|EEO89803.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides A] gi|262362646|gb|ACY59367.1| NADH dehydrogenase I chain F [Yersinia pestis D106004] gi|262366275|gb|ACY62832.1| NADH dehydrogenase I chain F [Yersinia pestis D182038] gi|270338670|gb|EFA49447.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27] gi|294354824|gb|ADE65165.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003] gi|320014611|gb|ADV98182.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 461 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 57 VVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLLMEQLP 116 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP I+ Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAII 236 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 354 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 355 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 415 EPLQSAIKYFRDEFEAGI 432 >gi|238794603|ref|ZP_04638210.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC 29909] gi|238726089|gb|EEQ17636.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC 29909] Length = 439 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 41 VVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAISEATEAGLLGKNIMGSGFDFEL 160 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E I+ E++E + GG+R G Sbjct: 221 EHGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 399 EPLQSAIKYFREEFEAGI 416 >gi|261346153|ref|ZP_05973797.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541] gi|282565806|gb|EFB71341.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541] Length = 453 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 170/404 (42%), Positives = 243/404 (60%), Gaps = 7/404 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + V++ L+ D ++N VK +GL+GRGGAGFSTG+KWS MPK + + Sbjct: 31 LDEYRSKNGYKGVERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 90 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y + NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE+I + L+ Sbjct: 91 YFLCNADEMEPGTYKDRLLMEELPHLLVEGMIIGAYALKAYRGYIFLRGEYIEAAKHLRR 150 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 151 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 210 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P E Sbjct: 211 TSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNPGLWE 270 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L + MD++ + + GS L Sbjct: 271 LPFGTTAREVLEDYAGGMRDGL-KLKAWQPGGAGTDFLTNDHL-DLPMDFENIAKAGSRL 328 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q+ +I Sbjct: 329 GTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQEGDI 388 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L ++ + + G+T CA A P+Q IK FR E I + Sbjct: 389 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRKEFEAGISK 432 >gi|15802831|ref|NP_288858.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 EDL933] gi|15832422|ref|NP_311195.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. Sakai] gi|24113656|ref|NP_708166.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 301] gi|30063710|ref|NP_837881.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 2457T] gi|74312802|ref|YP_311221.1| NADH dehydrogenase I subunit F [Shigella sonnei Ss046] gi|82544762|ref|YP_408709.1| NADH dehydrogenase I subunit F [Shigella boydii Sb227] gi|157155010|ref|YP_001463627.1| NADH dehydrogenase I subunit F [Escherichia coli E24377A] gi|157161772|ref|YP_001459090.1| NADH dehydrogenase I subunit F [Escherichia coli HS] gi|168748133|ref|ZP_02773155.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4113] gi|168755036|ref|ZP_02780043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4401] gi|168761277|ref|ZP_02786284.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4501] gi|168767910|ref|ZP_02792917.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4486] gi|168772990|ref|ZP_02797997.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4196] gi|168780139|ref|ZP_02805146.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4076] gi|168787191|ref|ZP_02812198.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC869] gi|168798454|ref|ZP_02823461.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC508] gi|170019407|ref|YP_001724361.1| NADH dehydrogenase I subunit F [Escherichia coli ATCC 8739] gi|187730354|ref|YP_001881105.1| NADH dehydrogenase I subunit F [Shigella boydii CDC 3083-94] gi|191166468|ref|ZP_03028298.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A] gi|193068131|ref|ZP_03049095.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019] gi|195935661|ref|ZP_03081043.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. EC4024] gi|208808283|ref|ZP_03250620.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4206] gi|208813079|ref|ZP_03254408.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4045] gi|208821937|ref|ZP_03262257.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4042] gi|209395949|ref|YP_002271693.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4115] gi|209919732|ref|YP_002293816.1| NADH dehydrogenase I subunit F [Escherichia coli SE11] gi|217327207|ref|ZP_03443290.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. TW14588] gi|218548267|ref|YP_002382058.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ATCC 35469] gi|218554840|ref|YP_002387753.1| NADH dehydrogenase I subunit F [Escherichia coli IAI1] gi|218695883|ref|YP_002403550.1| NADH dehydrogenase I subunit F [Escherichia coli 55989] gi|218705814|ref|YP_002413333.1| NADH dehydrogenase I subunit F [Escherichia coli UMN026] gi|254794176|ref|YP_003079013.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. TW14359] gi|261223262|ref|ZP_05937543.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7 str. FRIK2000] gi|261259188|ref|ZP_05951721.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7 str. FRIK966] gi|291283525|ref|YP_003500343.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7 str. CB9615] gi|293405750|ref|ZP_06649742.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412] gi|293446621|ref|ZP_06663043.1| NADH oxidoreductase [Escherichia coli B088] gi|298381433|ref|ZP_06991032.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302] gi|300818115|ref|ZP_07098327.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1] gi|300822155|ref|ZP_07102297.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7] gi|300896958|ref|ZP_07115439.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1] gi|300903669|ref|ZP_07121585.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1] gi|300918551|ref|ZP_07135141.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1] gi|300924543|ref|ZP_07140507.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1] gi|301024082|ref|ZP_07187796.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1] gi|301303257|ref|ZP_07209382.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1] gi|301328776|ref|ZP_07221824.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1] gi|307311156|ref|ZP_07590800.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W] gi|309793163|ref|ZP_07687591.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7] gi|331668982|ref|ZP_08369830.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271] gi|331678230|ref|ZP_08378905.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591] gi|331683955|ref|ZP_08384551.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299] gi|12516634|gb|AAG57413.1|AE005460_7 NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. EDL933] gi|13362638|dbj|BAB36591.1| NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. Sakai] gi|24052720|gb|AAN43873.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 301] gi|30041965|gb|AAP17691.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 2457T] gi|73856279|gb|AAZ88986.1| NADH dehydrogenase I chain F [Shigella sonnei Ss046] gi|81246173|gb|ABB66881.1| NADH dehydrogenase I chain F [Shigella boydii Sb227] gi|157067452|gb|ABV06707.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli HS] gi|157077040|gb|ABV16748.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E24377A] gi|169754335|gb|ACA77034.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli ATCC 8739] gi|187427346|gb|ACD06620.1| NADH-quinone oxidoreductase, F subunit [Shigella boydii CDC 3083-94] gi|187771025|gb|EDU34869.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4196] gi|188017288|gb|EDU55410.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4113] gi|189001980|gb|EDU70966.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4076] gi|189357618|gb|EDU76037.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4401] gi|189362935|gb|EDU81354.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4486] gi|189368325|gb|EDU86741.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4501] gi|189372792|gb|EDU91208.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC869] gi|189378940|gb|EDU97356.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC508] gi|190903428|gb|EDV63147.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A] gi|192958410|gb|EDV88849.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019] gi|208728084|gb|EDZ77685.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4206] gi|208734356|gb|EDZ83043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4045] gi|208742060|gb|EDZ89742.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4042] gi|209157349|gb|ACI34782.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4115] gi|209765108|gb|ACI80866.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765110|gb|ACI80867.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765112|gb|ACI80868.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765114|gb|ACI80869.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765116|gb|ACI80870.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209912991|dbj|BAG78065.1| NADH dehydrogenase I chain F [Escherichia coli SE11] gi|217319574|gb|EEC27999.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. TW14588] gi|218352615|emb|CAU98396.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli 55989] gi|218355808|emb|CAQ88421.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia fergusonii ATCC 35469] gi|218361608|emb|CAQ99200.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI1] gi|218432911|emb|CAR13805.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli UMN026] gi|254593576|gb|ACT72937.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7 str. TW14359] gi|281601725|gb|ADA74709.1| NADH dehydrogenase I chain F [Shigella flexneri 2002017] gi|290763398|gb|ADD57359.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7 str. CB9615] gi|291323451|gb|EFE62879.1| NADH oxidoreductase [Escherichia coli B088] gi|291427958|gb|EFF00985.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412] gi|298278875|gb|EFI20389.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302] gi|300359226|gb|EFJ75096.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1] gi|300396738|gb|EFJ80276.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1] gi|300404325|gb|EFJ87863.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1] gi|300414286|gb|EFJ97596.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1] gi|300419261|gb|EFK02572.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1] gi|300525285|gb|EFK46354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7] gi|300529259|gb|EFK50321.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1] gi|300841431|gb|EFK69191.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1] gi|300844838|gb|EFK72598.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1] gi|306908662|gb|EFN39159.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W] gi|308123449|gb|EFO60711.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7] gi|313651107|gb|EFS15506.1| NADH oxidoreductase, F subunit [Shigella flexneri 2a str. 2457T] gi|315061576|gb|ADT75903.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli W] gi|315255218|gb|EFU35186.1| NADH oxidoreductase, F subunit [Escherichia coli MS 85-1] gi|320177166|gb|EFW52178.1| NADH-ubiquinone oxidoreductase chain F [Shigella dysenteriae CDC 74-1112] gi|320183379|gb|EFW58231.1| NADH-ubiquinone oxidoreductase chain F [Shigella flexneri CDC 796-83] gi|320192095|gb|EFW66740.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7 str. EC1212] gi|320641111|gb|EFX10590.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. G5101] gi|320646499|gb|EFX15418.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str. 493-89] gi|320651596|gb|EFX19976.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str. H 2687] gi|320657348|gb|EFX25150.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663050|gb|EFX30367.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str. USDA 5905] gi|320667868|gb|EFX34776.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. LSU-61] gi|323184397|gb|EFZ69773.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1357] gi|323377844|gb|ADX50112.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli KO11] gi|323967725|gb|EGB63137.1| NADH oxidoreductase [Escherichia coli M863] gi|323977515|gb|EGB72601.1| NADH oxidoreductase [Escherichia coli TW10509] gi|324020880|gb|EGB90099.1| NADH oxidoreductase, F subunit [Escherichia coli MS 117-3] gi|324112816|gb|EGC06792.1| NADH oxidoreductase [Escherichia fergusonii B253] gi|324117838|gb|EGC11737.1| NADH oxidoreductase [Escherichia coli E1167] gi|325496681|gb|EGC94540.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ECD227] gi|326339635|gb|EGD63446.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7 str. 1125] gi|326344097|gb|EGD67858.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7 str. 1044] gi|327252554|gb|EGE64213.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli STEC_7v] gi|331064176|gb|EGI36087.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271] gi|331074690|gb|EGI46010.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591] gi|331078907|gb|EGI50109.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299] gi|332093612|gb|EGI98670.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 3594-74] gi|332344065|gb|AEE57399.1| NADH oxidoreductase NuoF [Escherichia coli UMNK88] gi|332754932|gb|EGJ85297.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri 4343-70] gi|332755333|gb|EGJ85697.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-671] gi|332756192|gb|EGJ86543.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri 2747-71] gi|332766103|gb|EGJ96313.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri 2930-71] gi|333001428|gb|EGK20996.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri VA-6] gi|333001728|gb|EGK21294.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-218] gi|333002651|gb|EGK22211.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-272] gi|333016398|gb|EGK35729.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-304] gi|333016535|gb|EGK35865.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-227] Length = 445 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|194433349|ref|ZP_03065629.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012] gi|194418443|gb|EDX34532.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012] gi|332088414|gb|EGI93532.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 5216-82] gi|332090604|gb|EGI95700.1| NADH oxidoreductase (quinone), F subunit [Shigella dysenteriae 155-74] Length = 445 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|194374173|dbj|BAG62399.1| unnamed protein product [Homo sapiens] Length = 335 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 147/217 (67%), Positives = 174/217 (80%) Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ Sbjct: 108 GRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPL 167 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIV Sbjct: 168 KELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIV 227 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 MDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+G A+ EID L+E+S Sbjct: 228 MDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEIS 287 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 K IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 288 KQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/93 (53%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLV-VNADESEPGTCK 93 TG+KWSFM K RP + V P C+ Sbjct: 95 TGLKWSFMNKPSDGRPTTVANVETVAVSPTICR 127 >gi|51596902|ref|YP_071093.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP 32953] gi|186895983|ref|YP_001873095.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis PB1/+] gi|51590184|emb|CAH21821.1| NADH dehydrogenase I chain F [Yersinia pseudotuberculosis IP 32953] gi|186699009|gb|ACC89638.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis PB1/+] Length = 461 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 57 VVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLLMEQLP 116 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP I+ Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAII 236 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 354 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 355 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 415 EPLQSAIKYFRDEFEAGI 432 >gi|293415577|ref|ZP_06658220.1| NADH oxidoreductase [Escherichia coli B185] gi|291433225|gb|EFF06204.1| NADH oxidoreductase [Escherichia coli B185] Length = 445 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|183599632|ref|ZP_02961125.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827] gi|188021884|gb|EDU59924.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827] Length = 452 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 170/404 (42%), Positives = 242/404 (59%), Gaps = 7/404 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + V++ L+ D +++ VK +GL+GRGGAGFSTG+KWS MPK + + Sbjct: 30 LDEYRSKNGYKGVERALKGMAPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 89 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y + NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ + L+ Sbjct: 90 YFLCNADEMEPGTYKDRLLMEQLPHLLVEGMIIGAYALKAYRGYIFLRGEYVEAAKHLRR 149 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 150 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 209 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P E Sbjct: 210 TSGAWGKPTCVNNVETICNVPAILEHGEQWYINLSAGKSKDAGTKLMGFSGRVKNPGLWE 269 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L G MD++ + + GS L Sbjct: 270 LPFGTTAREVLEDYAGGMRDGL-TLKAWQPGGAGTDFL-TGDHLDLPMDFESIGKAGSRL 327 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q +I Sbjct: 328 GTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQPGDI 387 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 388 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGISQ 431 >gi|320199872|gb|EFW74461.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli EC4100B] Length = 445 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|238788650|ref|ZP_04632442.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC 33641] gi|238723245|gb|EEQ14893.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC 33641] Length = 440 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 41 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D ++ Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAANLRRAIAEATEAGLLGKNIMGSGFDFEL 160 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVTLVRNLEEF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 399 EPLQSAIKYFREEFEAGI 416 >gi|238753750|ref|ZP_04615111.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473] gi|238707986|gb|EEQ00343.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473] Length = 439 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 41 VVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 160 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E I+ E++E + GG+R G Sbjct: 221 EHGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 399 EPLQSAIKYFRDEFEAGI 416 >gi|259907931|ref|YP_002648287.1| NADH dehydrogenase I subunit F [Erwinia pyrifoliae Ep1/96] gi|224963553|emb|CAX55043.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae Ep1/96] gi|283477812|emb|CAY73728.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae DSM 12163] Length = 446 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 168/397 (42%), Positives = 238/397 (59%), Gaps = 5/397 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LEEYRSKNGYAGAEKALKSMAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDASMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I +L+ Sbjct: 86 YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + G++G PT VNNVE+++ VP IL G WY G + GTK+ SG V P E Sbjct: 206 SAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISTSEDAGTKMMGFSGRVKNPGVWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E++ GG+R G A PGG+ L Q M++ + + GS LGT Sbjct: 266 FGTTAREILEEYAGGMRDGL-KFKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q +I+ Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 L ++ + + G+T CA A P+Q IK FR E Sbjct: 384 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420 >gi|146312470|ref|YP_001177544.1| NADH dehydrogenase I subunit F [Enterobacter sp. 638] gi|145319346|gb|ABP61493.1| NADH dehydrogenase subunit F [Enterobacter sp. 638] Length = 445 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 170/402 (42%), Positives = 237/402 (58%), Gaps = 5/402 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ ++ K L D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LDEYQSKNGYEGARKALAGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E+L+ Sbjct: 86 YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRR 145 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + G++G PT VNNVE++ VP IL G WY + GTKL SG V P E Sbjct: 206 SSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGLWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E + GG+R G A PGG+ L + M+++ + + GS LGT Sbjct: 266 FGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I+ Sbjct: 324 ALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|16130219|ref|NP_416787.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. MG1655] gi|82777692|ref|YP_404041.1| NADH dehydrogenase I subunit F [Shigella dysenteriae Sd197] gi|89109102|ref|AP_002882.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. W3110] gi|110642488|ref|YP_670218.1| NADH dehydrogenase I subunit F [Escherichia coli 536] gi|170081901|ref|YP_001731221.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. DH10B] gi|170680196|ref|YP_001744482.1| NADH dehydrogenase I subunit F [Escherichia coli SMS-3-5] gi|188495817|ref|ZP_03003087.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638] gi|191170009|ref|ZP_03031563.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11] gi|193062282|ref|ZP_03043377.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22] gi|194427216|ref|ZP_03059767.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171] gi|194436158|ref|ZP_03068260.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1] gi|218700758|ref|YP_002408387.1| NADH dehydrogenase I subunit F [Escherichia coli IAI39] gi|238901459|ref|YP_002927255.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952] gi|253772794|ref|YP_003035625.1| NADH dehydrogenase I subunit F [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162293|ref|YP_003045401.1| NADH dehydrogenase I subunit F [Escherichia coli B str. REL606] gi|256017560|ref|ZP_05431425.1| NADH dehydrogenase I subunit F [Shigella sp. D9] gi|256022032|ref|ZP_05435897.1| NADH dehydrogenase I subunit F [Escherichia sp. 4_1_40B] gi|260844871|ref|YP_003222649.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2 str. 12009] gi|260856328|ref|YP_003230219.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11 str. 11368] gi|260869007|ref|YP_003235409.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H- str. 11128] gi|293410644|ref|ZP_06654220.1| NADH oxidoreductase [Escherichia coli B354] gi|297519443|ref|ZP_06937829.1| NADH dehydrogenase I subunit F [Escherichia coli OP50] gi|300931363|ref|ZP_07146694.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1] gi|300936849|ref|ZP_07151738.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1] gi|300956456|ref|ZP_07168745.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1] gi|300981074|ref|ZP_07175346.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1] gi|301026954|ref|ZP_07190347.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1] gi|301647619|ref|ZP_07247415.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1] gi|307138948|ref|ZP_07498304.1| NADH dehydrogenase I subunit F [Escherichia coli H736] gi|309785012|ref|ZP_07679645.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617] gi|312973457|ref|ZP_07787629.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70] gi|331642922|ref|ZP_08344057.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736] gi|331653726|ref|ZP_08354727.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718] gi|332278570|ref|ZP_08390983.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9] gi|2506953|sp|P31979|NUOF_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F; AltName: Full=NUO6 gi|1788620|gb|AAC75344.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. MG1655] gi|1799645|dbj|BAA16113.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K12 substr. W3110] gi|81241840|gb|ABB62550.1| NADH dehydrogenase I chain F [Shigella dysenteriae Sd197] gi|110344080|gb|ABG70317.1| NADH dehydrogenase I chain F [Escherichia coli 536] gi|169889736|gb|ACB03443.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. DH10B] gi|170517914|gb|ACB16092.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli SMS-3-5] gi|188491016|gb|EDU66119.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638] gi|190909525|gb|EDV69110.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11] gi|192931948|gb|EDV84547.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22] gi|194414837|gb|EDX31108.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171] gi|194424886|gb|EDX40871.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1] gi|218370744|emb|CAR18557.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI39] gi|238861870|gb|ACR63868.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952] gi|242377917|emb|CAQ32686.1| NADH:ubiquinone oxidoreductase, chain F, subunit of soluble NADH dehydrogenase fragment and NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323838|gb|ACT28440.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974194|gb|ACT39865.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli B str. REL606] gi|253978361|gb|ACT44031.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BL21(DE3)] gi|257754977|dbj|BAI26479.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11 str. 11368] gi|257760018|dbj|BAI31515.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2 str. 12009] gi|257765363|dbj|BAI36858.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H- str. 11128] gi|260448623|gb|ACX39045.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli DH1] gi|291471112|gb|EFF13596.1| NADH oxidoreductase [Escherichia coli B354] gi|299879501|gb|EFI87712.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1] gi|300307687|gb|EFJ62207.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1] gi|300316726|gb|EFJ66510.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1] gi|300458036|gb|EFK21529.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1] gi|300460825|gb|EFK24318.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1] gi|301074246|gb|EFK89052.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1] gi|308927382|gb|EFP72856.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617] gi|309702596|emb|CBJ01924.1| NADH-quinone oxidoreductase subunit F [Escherichia coli ETEC H10407] gi|310332052|gb|EFP99287.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70] gi|315136918|dbj|BAJ44077.1| NADH dehydrogenase I subunit F [Escherichia coli DH1] gi|315615553|gb|EFU96185.1| NADH oxidoreductase, F subunit [Escherichia coli 3431] gi|323156434|gb|EFZ42589.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli EPECa14] gi|323161618|gb|EFZ47503.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli E128010] gi|323176791|gb|EFZ62381.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1180] gi|323936574|gb|EGB32861.1| NADH oxidoreductase [Escherichia coli E1520] gi|323941019|gb|EGB37206.1| NADH oxidoreductase [Escherichia coli E482] gi|323961467|gb|EGB57077.1| NADH oxidoreductase [Escherichia coli H489] gi|323973011|gb|EGB68205.1| NADH oxidoreductase [Escherichia coli TA007] gi|324013176|gb|EGB82395.1| NADH oxidoreductase, F subunit [Escherichia coli MS 60-1] gi|331039720|gb|EGI11940.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736] gi|331048575|gb|EGI20651.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718] gi|332100922|gb|EGJ04268.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9] Length = 445 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|114566549|ref|YP_753703.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337484|gb|ABI68332.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 407 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 165/416 (39%), Positives = 249/416 (59%), Gaps = 11/416 (2%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ RI YG + + D +++G + +++K +I EVK S LRGRGGAGF Sbjct: 1 MAEEMRIVLRNYGKIDPLKIDDYLAQGGYKSLEKARAMNTADLIAEVKKSNLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + GMKWSF +D+ Y++ NADE EPGT KDR IM ++PHTLIEG I ++AIGA Sbjct: 61 NCGMKWSFAAGAQADQ-KYVICNADEGEPGTYKDRLIMENDPHTLIEGMAICAYAIGATQ 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ +L A+++ GL+ D DI V GAGAY+CGEETAL+E Sbjct: 120 GYIYLRGEYPFLVSTLNTAINQAKEKGLV-------KDFDIEVRSGAGAYVCGEETALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PR KPP+P + GL+ PT VNNVE+ A +P I+ +GA WY+ G GTK Sbjct: 173 SIEGKRGEPRFKPPYPPSEGLWSKPTIVNNVETFANIPVIIEKGADWYASIGNPAYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N E + T E++ + GG+ G AV GG+S +P + Sbjct: 233 VFTLTGDINNRTFFEVPTNTTIREIVFQFGGGVPGD-KKFKAVQIGGTSGAFIPDALLDT 291 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + +D + +G+ LG+ A V+D S DI+ R++ F++HESCG+C PCREGT Sbjct: 292 PVA-FDSMSAIGATLGSGATFVIDESRDIVDVATRIAGFFEHESCGKCAPCREGTARTAE 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +ME++ +G +++ LL ++ + +C LG AA P+ IK+F+ E + Sbjct: 351 LMEKINEGRGSNKDVALLEKLGTVMSYSCLCGLGQAAPAPVLTTIKHFKADYEAKF 406 >gi|300114497|ref|YP_003761072.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii C-113] gi|299540434|gb|ADJ28751.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii C-113] Length = 424 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 167/387 (43%), Positives = 235/387 (60%), Gaps = 8/387 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 ++ EVK S LRGRGGAGF TG KWSF+P + RP YLV NADE EPGT KDR +M + Sbjct: 42 VLQEVKESNLRGRGGAGFPTGKKWSFVPMGDDAPRPKYLVANADEMEPGTFKDRLLMEGD 101 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDV 159 PH L+EG ++AS+AI A A+I++R E+ + L+ A+ E Y LG N LG + + Sbjct: 102 PHQLLEGMILASYAIQAEVAYIFLRAEYRLAAQRLKKAIAEAYEMNYLGKNL-LGSAFSL 160 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ +H AG YICGEETALL +LEGK+ PR KPP+P GL+G PT VNNVE++ VP Sbjct: 161 ELHLHTSAGRYICGEETALLNALEGKRAIPRAKPPYPQVSGLWGQPTVVNNVETLCNVPH 220 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ RGA+WY R + GTK + SG V +P E M E++E+H GG++ G+ Sbjct: 221 IIARGAAWYQNLSRSEDGGTKFYGASGRVKHPGAWELPMGTPIREILEEHAGGMKDGF-Q 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L ++PGG+S L + MDYD ++ GS LGT +I++D T + + L F Sbjct: 280 LRGLLPGGASTDFLTEEHL-DVPMDYDSVQSAGSRLGTGTMIILDDRTCPVGMLCNLEHF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W+ +++ + +G Q ++D L ++ + G T CA A Sbjct: 339 FAQESCGWCTPCRDGLPWVEKILLGIEQGQGQPEDLDYLTMHTRLLGPGHTFCAHAPGAM 398 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425 P+Q +K FR E+ I + RC F+ Sbjct: 399 EPLQSALKYFRADFEQHI-HHQRCPFK 424 >gi|46446198|ref|YP_007563.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Protochlamydia amoebophila UWE25] gi|46399839|emb|CAF23288.1| probable NADH-ubiquinone oxidoreductase chain F [Candidatus Protochlamydia amoebophila UWE25] Length = 432 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 179/381 (46%), Positives = 227/381 (59%), Gaps = 13/381 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I VK S LRGRGG GF TG+KWSF+PK C YLV N DESEPGT KDR I+ + Sbjct: 41 DQLIEMVKQSWLRGRGGGGFQTGLKWSFVPKDCQIS-KYLVCNCDESEPGTFKDRYIIEN 99 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH LIEG ++A +AIGA AFIY RGEF + L+ A+ E G L + + + V Sbjct: 100 DPHQLIEGIILACYAIGAKQAFIYCRGEFFEGNKKLRLAIQEAKKRGYLEAPLGEANFSV 159 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 IIVH GAGAYI GEETA L SLEG + PRLKPPFPA GLY PT VNNVE++ V Sbjct: 160 SIIVHPGAGAYIAGEETAQLNSLEGYRATPRLKPPFPAVSGLYEKPTVVNNVETLCNVVH 219 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-- 277 I+ RG WY G+ N GTK+F +SGHV P E + I E++E R GW Sbjct: 220 IVNRGVEWYQSIGKPKNTGTKIFQVSGHVQNPGCFEFPLGIPLKEVLE------RAGWML 273 Query: 278 --DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 A PGGSS L + MD+D + S LGTA++IVMD STD++K R Sbjct: 274 PGHQFKACYPGGSSCSLLTERDLDTP-MDFDSVAAKKSMLGTASIIVMDDSTDMVKVANR 332 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 L FY++ESCG+CTPCREGT W +++ R++ G ++ + + + +E + C L Sbjct: 333 LMEFYQNESCGKCTPCREGTRWTKQILTRILAGRGTVGDLKTIERICQQMEMDSFCPLAP 392 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 AA PI I+ FR E I Sbjct: 393 GAALPIVSAIREFRGEFESYI 413 >gi|188533351|ref|YP_001907148.1| NADH dehydrogenase I subunit F [Erwinia tasmaniensis Et1/99] gi|188028393|emb|CAO96254.1| NADH dehydrogenase I chain F [Erwinia tasmaniensis Et1/99] Length = 446 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/397 (42%), Positives = 239/397 (60%), Gaps = 5/397 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LEEYRSKNGYAGAEKALKTLAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I +L+ Sbjct: 86 YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + G++G PT VNNVE+++ VP IL G WY G ++ GTK+ SG V P E Sbjct: 206 SAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGVWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E++ GG+R G A PGG+ L Q M++ + + GS LGT Sbjct: 266 FGTTAREILEEYAGGMRDGL-KFKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q +I+ Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERKEGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 L ++ + + G+T CA A P+Q IK FR E Sbjct: 384 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420 >gi|291618185|ref|YP_003520927.1| NuoF [Pantoea ananatis LMG 20103] gi|291153215|gb|ADD77799.1| NuoF [Pantoea ananatis LMG 20103] gi|327394578|dbj|BAK12000.1| NADH-quinone oxidoreductase chain F Nuof [Pantoea ananatis AJ13355] Length = 448 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 171/400 (42%), Positives = 239/400 (59%), Gaps = 5/400 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ D I+ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 28 LDEYRSKNGYAGAEKALKGMAPDEIVALVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 87 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I L+ Sbjct: 88 YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 147 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 148 AIAEATEAGLLGKNILGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 207 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + G++G PT VNNVE+++ VP IL G WY G + ++ GTKL SG V P E Sbjct: 208 SAGVWGKPTCVNNVETLSNVPAILANGVEWYQGLSKSDDAGTKLMGFSGRVKNPGVWELP 267 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT E++E + GG+R G A PGG+ L Q M++ + + GS LGT Sbjct: 268 FGITAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLTE-QHLDLPMEFASIGKAGSRLGT 325 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q +I+ Sbjct: 326 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKKGQPGDIET 385 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L ++ + + G+T CA A P+Q IK FR E I Sbjct: 386 LEQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425 >gi|296274180|ref|YP_003656811.1| NADH dehydrogenase [Arcobacter nitrofigilis DSM 7299] gi|296098354|gb|ADG94304.1| NADH dehydrogenase (quinone) [Arcobacter nitrofigilis DSM 7299] Length = 423 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 171/402 (42%), Positives = 248/402 (61%), Gaps = 4/402 (0%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L ++ G + +++K+ + + EV SGLRG+GG G + G KW MP V +RP Sbjct: 22 KLDVALKNGRYTSIEKLFTMAPEDVTEEVCKSGLRGKGGGGAACGPKWKLMPPV-DERPR 80 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+VN DESEPGT KDR I +++PH LIEG + + +AIGAH A+IY+RGE+ + L Sbjct: 81 YLIVNGDESEPGTFKDRQIFQYDPHLLIEGIICSCYAIGAHDAYIYIRGEYKWFIDRLNE 140 Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+DE YA+G++G K + VDI VH G GAYICGE++AL+ESLEGK+G PRLKP Sbjct: 141 AIDEAYAAGIIGDKIMGKHDFRVDITVHRGGGAYICGEKSALIESLEGKRGHPRLKPHGK 200 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 Y P TVNNVE+IA VP I+ G Y+ +G E GT LF++SG V P E Sbjct: 201 ECEWFYDMPATVNNVETIASVPNIVENGYESYTKYGTEKAPGTMLFAMSGPVKNPGVYEL 260 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 ++I + GG++ G L AVIPGG+S P L A + A +DY+ + ++GS LG Sbjct: 261 QYGCKMADVINEIGGGMQDGL-KLKAVIPGGASCPILTAADVEKAYLDYESMWDIGSTLG 319 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T ++++ ++ L FY HESCGQCTPCREGTGW+ +++ L++G+A++ +I+ Sbjct: 320 TGGMMIIPEGVSMVDVAKNLIEFYHHESCGQCTPCREGTGWIDKILRELIEGVAKEDDIE 379 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L +V + G+TIC A I+ +++ ++ E I+ Sbjct: 380 TLLDVCDTMNGKTICVFAPAVKDIIKSIVEKYKHEFLELIEN 421 >gi|238798408|ref|ZP_04641889.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC 43969] gi|238717722|gb|EEQ09557.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC 43969] Length = 439 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 41 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D ++ Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGSGFDFEL 160 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 399 EPLQSAIKYFREEFEAGI 416 >gi|238751244|ref|ZP_04612738.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380] gi|238710518|gb|EEQ02742.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380] Length = 439 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 41 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D ++ Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGSGFDFEL 160 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 399 EPLQSAIKYFREEFEAGI 416 >gi|318606464|emb|CBY27962.1| NADH-ubiquinone oxidoreductase chain F [Yersinia enterocolitica subsp. palearctica Y11] Length = 455 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 57 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 116 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 236 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 354 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 355 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGSGKTFCAHAPGAV 414 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 415 EPLQSAIKYFREEFEAGI 432 >gi|331658365|ref|ZP_08359327.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206] gi|331056613|gb|EGI28622.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206] Length = 421 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 24 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 83 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 84 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 143 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP Sbjct: 144 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 203 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 204 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 262 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 263 FKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 321 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 322 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 381 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 382 EPLQSAIKYFREEFEAGIKQ 401 >gi|268591139|ref|ZP_06125360.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131] gi|291313365|gb|EFE53818.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131] Length = 452 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/404 (41%), Positives = 242/404 (59%), Gaps = 7/404 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +++ L+ D ++N VK +GL+GRGGAGFSTG+KWS MPK + + Sbjct: 30 LDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 89 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y + NADE EPGT KDR +M PH L+EG + ++A+ A+ +I++RGE++ ++L+ Sbjct: 90 YFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAAQNLRR 149 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 150 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 209 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P E Sbjct: 210 TSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNPGLWE 269 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L + MD++ + + GS L Sbjct: 270 LPFGTTAREVLEDYAGGMRDGL-KLKAWQPGGAGTDFLTNDHL-DLPMDFENIAKAGSRL 327 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q +I Sbjct: 328 GTALAMAVDHEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQPGDI 387 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 388 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGISQ 431 >gi|157371541|ref|YP_001479530.1| NADH dehydrogenase I subunit F [Serratia proteamaculans 568] gi|157323305|gb|ABV42402.1| NADH-quinone oxidoreductase, F subunit [Serratia proteamaculans 568] Length = 450 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 170/387 (43%), Positives = 232/387 (59%), Gaps = 6/387 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 49 DEIVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 108 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +G LG N G+D Sbjct: 109 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGYLGKNIMGSGFDF 168 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 169 ELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 228 Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 IL G WY G G+ N+ GTKL SG V P E T E++E + GG+R G Sbjct: 229 ILANGVEWYKGISAGKSNDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL 288 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L Sbjct: 289 -RFKAWQPGGAGTDFLTADHLD-LPMDFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLE 346 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L G Q +I+ L ++ +++ G+T CA Sbjct: 347 EFFSRESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRSLGPGKTFCAHAPG 406 Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCN 423 A P+Q IK FR E I H N Sbjct: 407 AVEPLQSAIKYFREEFEAGIKVKHFSN 433 >gi|332162385|ref|YP_004298962.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666615|gb|ADZ43259.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 455 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 57 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 116 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 236 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 354 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 355 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 415 EPLQSAIKYFREEFEAGI 432 >gi|123441680|ref|YP_001005664.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088641|emb|CAL11436.1| NADH dehydrogenase I chain F [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 456 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 57 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 116 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 236 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E IT E++E + GG+R G Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 296 FKAWQPGGAGTDFLTADHL-DLPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 354 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 355 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 415 EPLQSAIKYFREEFEAGI 432 >gi|238759966|ref|ZP_04621119.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236] gi|238701793|gb|EEP94357.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236] Length = 440 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 167/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 41 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAISEATEAGLLGKNIMGSGFDFEL 160 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E I+ E++E + GG+R G Sbjct: 221 EHGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 279 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 339 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 399 EPLQSAIKYFREEFEAGI 416 >gi|293395174|ref|ZP_06639460.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582] gi|291422351|gb|EFE95594.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582] Length = 450 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 169/387 (43%), Positives = 231/387 (59%), Gaps = 6/387 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 49 DEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 108 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE++ L+ A+ E +GLLG N G+D Sbjct: 109 LPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRRAIAEATEAGLLGKNIMGSGFDF 168 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 169 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNVPA 228 Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 IL G WY G G+ N+ GTKL SG V P E T E++E + GG+R G Sbjct: 229 ILANGVDWYKGISAGKSNDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL 288 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L Sbjct: 289 -KFKAWQPGGAGTDFLTADHLD-LPMDFENIGKAGSRLGTALAMAVDHEIGMVPLVRNLE 346 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L G Q +I+ L ++ + + G+T CA Sbjct: 347 EFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 406 Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCN 423 A P+Q IK FR E I N Sbjct: 407 AVEPLQSAIKYFRDEFEAGIKVQQFSN 433 >gi|114567343|ref|YP_754497.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338278|gb|ABI69126.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 407 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 171/409 (41%), Positives = 245/409 (59%), Gaps = 11/409 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ RI YG DS ++ G + + K + +I EVK SGLRGRGGAGF Sbjct: 1 MAEEMRIVLRNYGKVDPLNIDSYTQVGGYQALAKAKSMSQTDLIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +TGMKWSF V +D+ Y++ NADE EPGT KDR IM ++P +++EG I +AIGA+ Sbjct: 61 NTGMKWSFSYGVKADQ-KYVICNADEGEPGTYKDRIIMENDPQSVLEGMAICGYAIGANK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGE+ E L A+ + GLLG D +I V GAGAY+CGEE+AL+E Sbjct: 120 GYIYCRGEYPYVVEILNKAIAQASEKGLLG-------DFNIEVRMGAGAYVCGEESALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G+PR KPPFP +GL+G PT VNNVE+ A +P I+ +GA WY G G GTK Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWGKPTIVNNVETFANIPAIVDKGADWYKGIGAAGYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G + +E + T ++++ GGI GG AV GG+S +P + Sbjct: 233 VMTLTGDIVNRTVIEVPTNTTIRQVLDDFGGGITGG-KKFKAVQIGGTSGGFIPESLLDT 291 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I D+D + +G+ LG+ A VMD + DI+ I R+S F+ HESCG+CTPCREGT M Sbjct: 292 PI-DFDSMSAIGATLGSGAFFVMDETRDIVDVIDRISKFFAHESCGKCTPCREGTQRMHE 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ R+ G A ++D + + + +C LG AA P+ +K+FR Sbjct: 351 MLHRVKNGGAVAGDLDYMERLGSVMSKACLCGLGQAAPAPVLTTLKHFR 399 >gi|294637175|ref|ZP_06715483.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685] gi|291089639|gb|EFE22200.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685] Length = 448 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 166/381 (43%), Positives = 232/381 (60%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 47 QDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 106 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH L+EG +I ++A+ A+ +I++RGE++ L+ A++E A+GLLG N G+D Sbjct: 107 QLPHLLVEGMLIGAYALKAYRGYIFLRGEYVAAAHHLRRAIEEARAAGLLGKNILGSGFD 166 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 167 FDLFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASAGVWGKPTCVNNVETLCNVP 226 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ GA+WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 227 AIIEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 286 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD+ + + GS LGTA + +D +++ + L Sbjct: 287 L-KLKAWQPGGAGTDFLTEAHL-DLPMDFASIGKAGSRLGTALAMAVDHEVNMVSLLCNL 344 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G T CA Sbjct: 345 ESFFARESCGWCTPCRDGLPWGLKILRALERGEGQPGDIETLEQLCRLLAPGHTFCAHAP 404 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+Q IK FR E I Sbjct: 405 GAVEPLQSAIKYFRDEFEAGI 425 >gi|157144785|ref|YP_001452104.1| NADH dehydrogenase I subunit F [Citrobacter koseri ATCC BAA-895] gi|157081990|gb|ABV11668.1| hypothetical protein CKO_00512 [Citrobacter koseri ATCC BAA-895] Length = 445 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|292488839|ref|YP_003531726.1| NADH dehydrogenase I subunit F [Erwinia amylovora CFBP1430] gi|292899990|ref|YP_003539359.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946] gi|291199838|emb|CBJ46962.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946] gi|291554273|emb|CBA21591.1| NADH dehydrogenase I chain F [Erwinia amylovora CFBP1430] gi|312172999|emb|CBX81254.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC BAA-2158] Length = 446 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 167/397 (42%), Positives = 239/397 (60%), Gaps = 5/397 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LDEYRSKNGYAGAEKALKTLTPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I +L+ Sbjct: 86 YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E A+GLLG N G+D +++VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATAAGLLGKNILGTGFDFELVVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + G++G PT VNNVE+++ VP IL G WY ++ GTK+ SG V P E Sbjct: 206 SAGVWGKPTCVNNVETLSNVPAILANGVDWYKSISNSDDAGTKMMGFSGRVKNPGVWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E++ GG+R G A PGG+ L Q M++ + + GS LGT Sbjct: 266 FGTTAREILEEYAGGMRDGL-KFKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q +I+ Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 L ++ + + G+T CA A P+Q IK FR E Sbjct: 384 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420 >gi|212712280|ref|ZP_03320408.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM 30120] gi|212685026|gb|EEB44554.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM 30120] Length = 452 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 167/404 (41%), Positives = 243/404 (60%), Gaps = 7/404 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +++ L+ D ++N VK +GL+GRGGAGFSTG+KWS MPK + + Sbjct: 30 LDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 89 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y + NADE EPGT KDR +M PH L+EG + ++A+ A+ +I++RGE++ +L+ Sbjct: 90 YFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAARNLRR 149 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 150 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 209 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 + G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P E Sbjct: 210 SSGAWGKPTCVNNVETICNVPAILEHGDQWYINLSAGKSKDAGTKLMGFSGRVKNPGLWE 269 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L + MD++ + + GS L Sbjct: 270 LPFGTTAREVLEDYAGGMRDGL-KLKAWQPGGAGTDFLTNDHL-DLPMDFENIAKAGSRL 327 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q+ +I Sbjct: 328 GTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQEGDI 387 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L ++ + + G+T CA A P+Q IK FR E I + Sbjct: 388 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRGEFEAGISK 431 >gi|200387672|ref|ZP_03214284.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604770|gb|EDZ03315.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 445 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 164/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I + L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|311278759|ref|YP_003940990.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1] gi|308747954|gb|ADO47706.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1] Length = 445 Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I++ VK SGL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DDIVSAVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I ++L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQNLRRAIAEATEAGLLGKNILGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGAWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFRDEFEAGIKQ 425 >gi|237732315|ref|ZP_04562796.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2] gi|283832286|ref|ZP_06352027.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220] gi|226907854|gb|EEH93772.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2] gi|291071930|gb|EFE10039.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220] Length = 445 Score = 311 bits (798), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 165/380 (43%), Positives = 228/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGAWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] Length = 597 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/418 (39%), Positives = 252/418 (60%), Gaps = 5/418 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI N + L D ++ ++ + K L + I+ EVK SGLRGRGGAG Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMAPEAIVEEVKESGLRGRGGAG 171 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 FSTG+KWS SD+ Y++ NADE +PG DR ++ +PH +IEG +I ++AIGA Sbjct: 172 FSTGLKWSLCRATPSDK-KYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ ++LQ A+ + +G LG+N G++ + ++ GAGA++CGEETAL Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR++PPFPA GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G VN VE M + ++I GGI+ G AV GG S CLP M Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDIGGGIKDG-KKFKAVQIGGPSGGCLPE-DM 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L + G+ +G+ +++MD +T ++ F + ESCG+CTPCREG M Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++R+ +G ++ +I+ L ++ ++ ++C LG A PI +K FR EE I Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI 526 >gi|197264028|ref|ZP_03164102.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242283|gb|EDY24903.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 445 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 164/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G +Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGESQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|238763930|ref|ZP_04624887.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC 33638] gi|238697898|gb|EEP90658.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC 33638] Length = 445 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 166/378 (43%), Positives = 232/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 46 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 105 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +G+LG N G+D ++ Sbjct: 106 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGMLGKNIMGSGFDFEL 165 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 166 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 225 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ N+ GTKL SG V P E I+ E++E + GG+R G Sbjct: 226 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 284 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D ++ + L F Sbjct: 285 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 343 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 344 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 403 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 404 EPLQSAIKYFREEFEAGI 421 >gi|85059575|ref|YP_455277.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str. 'morsitans'] gi|84780095|dbj|BAE74872.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str. 'morsitans'] Length = 451 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 171/390 (43%), Positives = 231/390 (59%), Gaps = 8/390 (2%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I+ VK SGL+GRGGAGFSTG+KWS MPK + YL+ NADE EPGT KDR +M Sbjct: 48 QDDIVTLVKDSGLKGRGGAGFSTGLKWSLMPKDPAMNIRYLLCNADEMEPGTYKDRLLME 107 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH L+EG +IA+FA+ A+ +I++RGE+I +L+ A+ E +G LG N G+D Sbjct: 108 QLPHLLVEGMLIAAFALKAYRGYIFLRGEYIEAAANLRRAIAEATEAGWLGKNILGSGFD 167 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP Sbjct: 168 FELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227 Query: 219 TILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 IL G WY G N+ GTKL SG V P E IT E++E + GG+R Sbjct: 228 AILEHGVDWYQGITAGKSNSNDAGTKLMGFSGRVKNPGVWELPFGITAREILEDYAGGMR 287 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G L A PGG+ L + MD++ + + GS LGTA + +D +++ Sbjct: 288 DGL-TLKAWQPGGAGTDFLIQDHLD-LPMDFENIGKAGSRLGTALAMAVDNEINMVSLTR 345 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393 L F+ ESCG CTPCR+G W ++++ L G Q +I+ L ++ + + G+T CA Sbjct: 346 NLEEFFARESCGWCTPCRDGLPWSVKLLRALESGKGQPGDIETLEQLCRFLGPGKTFCAH 405 Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 A P+Q IK FR E I H N Sbjct: 406 APGAVEPLQSAIKYFRSEFEAGISVEHLGN 435 >gi|167949925|ref|ZP_02536999.1| NADH-quinone oxidoreductase, chain F [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589392|gb|ABG77205.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 321 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 156/302 (51%), Positives = 207/302 (68%), Gaps = 4/302 (1%) Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+RGEF E +A ++E A+GLLG + G+D ++ H GAGAY+CGEETALLE Sbjct: 15 YNYIRGEFWEPYERFEACLEEARAAGLLGEDLFGSGFDFELHAHLGAGAYVCGEETALLE 74 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGKKGQPR KPPFPA+ GLYG PT +NN ES+A +P IL +G W++ G +N+ G+K Sbjct: 75 SIEGKKGQPRFKPPFPAHFGLYGRPTIINNTESLASIPMILEKGGKWFADVGVKNSGGSK 134 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSISG++N P E M F EL+E GG++ G + AVIPGGSS P +P M Sbjct: 135 LFSISGNLNNPGVFEIPMGTPFSELLEM-AGGMKDG-RKIKAVIPGGSSSPVIPGEMMMD 192 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + GS LG+ AVIV+D + +++ + R+S FY ESCGQCTPCREGTGW+ R Sbjct: 193 LTMDYDAIANAGSMLGSGAVIVLDDTNCMVRVLERMSYFYHEESCGQCTPCREGTGWLYR 252 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ G + ++DLL +V+ I GRTICALGDAAA P+QG++K FR + ID + Sbjct: 253 VVSRIENGKGCQEDLDLLDDVAAKIAGRTICALGDAAAMPVQGMLKYFRDEFQYHID-HQ 311 Query: 421 RC 422 RC Sbjct: 312 RC 313 >gi|304398212|ref|ZP_07380086.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB] gi|308187600|ref|YP_003931731.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1] gi|304354078|gb|EFM18451.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB] gi|308058110|gb|ADO10282.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1] Length = 448 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 167/397 (42%), Positives = 235/397 (59%), Gaps = 5/397 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ +D I+ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 28 LDEYRSKNGYAGAEKALKSMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 87 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I L+ Sbjct: 88 YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 147 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +G LG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 148 AIAEATEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 207 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + G +G PT VNNVE+++ VP IL G WY + + GTK+ SG V P E Sbjct: 208 SAGAWGKPTCVNNVETLSNVPAILANGVEWYKNISKSEDAGTKMMGFSGRVKNPGVWELP 267 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT E++E + GG+R G A PGG+ L Q M++ + + GS LGT Sbjct: 268 FGITAREILEDYAGGMRDGL-KFKAWQPGGAGTDFL-TDQHLDLPMEFASIGKAGSRLGT 325 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q +I+ Sbjct: 326 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPGDIET 385 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 L ++ + + G+T CA A P+Q IK FR E Sbjct: 386 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 422 >gi|62180894|ref|YP_217311.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128527|gb|AAX66230.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715373|gb|EFZ06944.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 445 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/380 (43%), Positives = 228/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|16765651|ref|NP_461266.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412779|ref|YP_149854.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161502531|ref|YP_001569643.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612948|ref|YP_001586913.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549677|ref|ZP_02343436.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994672|ref|ZP_02575763.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229693|ref|ZP_02654751.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237341|ref|ZP_02662399.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242442|ref|ZP_02667374.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261660|ref|ZP_02683633.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465973|ref|ZP_02699843.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817946|ref|ZP_02829946.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443680|ref|YP_002041584.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451801|ref|YP_002046377.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469483|ref|ZP_03075467.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736167|ref|YP_002115393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249657|ref|YP_002147282.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361713|ref|YP_002141349.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242534|ref|YP_002216394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204929246|ref|ZP_03220389.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353439|ref|YP_002227240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857742|ref|YP_002244393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583190|ref|YP_002636988.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912397|ref|ZP_04656234.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141542|sp|P33901|NUOF_SALTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|16420865|gb|AAL21225.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127036|gb|AAV76542.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160863878|gb|ABX20501.1| hypothetical protein SARI_00575 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362312|gb|ABX66080.1| hypothetical protein SPAB_00654 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402343|gb|ACF62565.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410105|gb|ACF70324.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455847|gb|EDX44686.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711669|gb|ACF90890.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631228|gb|EDX49788.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093189|emb|CAR58633.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213360|gb|ACH50757.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289714|gb|EDY29077.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937050|gb|ACH74383.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204321790|gb|EDZ06989.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273220|emb|CAR38183.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325480|gb|EDZ13319.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327504|gb|EDZ14268.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335912|gb|EDZ22676.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338467|gb|EDZ25231.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344967|gb|EDZ31731.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349424|gb|EDZ36055.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709545|emb|CAR33890.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467717|gb|ACN45547.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247530|emb|CBG25357.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994419|gb|ACY89304.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158882|emb|CBW18395.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913315|dbj|BAJ37289.1| NADH dehydrogenase subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086758|emb|CBY96530.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322617070|gb|EFY13976.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617624|gb|EFY14523.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624746|gb|EFY21575.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630295|gb|EFY27065.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634476|gb|EFY31209.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639186|gb|EFY35878.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640049|gb|EFY36716.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645730|gb|EFY42254.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651506|gb|EFY47881.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656065|gb|EFY52364.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659418|gb|EFY55665.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665878|gb|EFY62061.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669882|gb|EFY66023.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673868|gb|EFY69965.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678626|gb|EFY74682.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683578|gb|EFY79592.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687654|gb|EFY83624.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130655|gb|ADX18085.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193512|gb|EFZ78717.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198417|gb|EFZ83519.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201931|gb|EFZ86993.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208531|gb|EFZ93470.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209760|gb|EFZ94684.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218296|gb|EGA03006.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222947|gb|EGA07296.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227382|gb|EGA11547.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232291|gb|EGA16394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235675|gb|EGA19759.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241164|gb|EGA25200.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244906|gb|EGA28908.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250025|gb|EGA33919.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251637|gb|EGA35505.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254948|gb|EGA38739.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260328|gb|EGA43947.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268096|gb|EGA51573.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270811|gb|EGA54249.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624145|gb|EGE30490.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628531|gb|EGE34874.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989257|gb|AEF08240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 445 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/380 (43%), Positives = 228/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|152971212|ref|YP_001336321.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579298|ref|YP_002237328.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342] gi|238895801|ref|YP_002920537.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae NTUH-K2044] gi|262043324|ref|ZP_06016453.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934258|ref|YP_003438317.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22] gi|290508461|ref|ZP_06547832.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55] gi|330003560|ref|ZP_08304675.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3] gi|150956061|gb|ABR78091.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568356|gb|ACI10132.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342] gi|238548119|dbj|BAH64470.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039348|gb|EEW40490.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888987|gb|ADC57305.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22] gi|289777855|gb|EFD85852.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55] gi|328536900|gb|EGF63199.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3] Length = 445 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 163/380 (42%), Positives = 228/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I + L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGT+ + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTSLAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|253989004|ref|YP_003040360.1| NADH dehydrogenase I subunit F [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780454|emb|CAQ83616.1| nadh dehydrogenase i chain f (nadh-ubiquinone oxidoreductase chain 6 (nuo6) [Photorhabdus asymbiotica] Length = 454 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 165/378 (43%), Positives = 231/378 (61%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 56 VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 115 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE++ L+ A++E A+GLLG N G+D ++ Sbjct: 116 HLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRKAIEEAKAAGLLGKNIMGSGFDFEL 175 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP+IL Sbjct: 176 FVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPSIL 235 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ + GTKL SG V P E IT E++E + GG+R G Sbjct: 236 EYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 294 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L A + MD++ + + GS LGTA + +D +++ L F Sbjct: 295 FKAWQPGGAGTDFLTAEHL-DLPMDFENIAKAGSRLGTALAMAVDHEINMVSLTRNLEEF 353 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ + +G Q +I+ L ++ + + G T CA A Sbjct: 354 FSRESCGWCTPCRDGLPWSVKILRAIERGEGQPGDIETLEQLCRFLGPGNTFCAHAPGAV 413 Query: 399 WPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 414 EPLQSAIKYFRDEFEAGI 431 >gi|304413375|ref|ZP_07394848.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella insecticola LSR1] gi|304284218|gb|EFL92611.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella insecticola LSR1] Length = 455 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 167/386 (43%), Positives = 234/386 (60%), Gaps = 6/386 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VK +GL+GRGGAGF TG+KWS MPK S YL+ NADE EPGT KDR +M P Sbjct: 49 VVDVVKNAGLKGRGGAGFPTGLKWSLMPKDDSINIRYLLCNADEMEPGTYKDRLLMEQLP 108 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +I +FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D ++ Sbjct: 109 HLLIEGMLIGAFALKAYRGYIFLRGEYIEAAVRLRQAISEAKGAGLLGKNILGSGFDFEL 168 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP IL Sbjct: 169 FVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASSGVWGRPTCVNNVETLCNVPAIL 228 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 +G WY G G+ N+ GTKL SG V P E IT E++E + GG+ G Sbjct: 229 EQGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGVWELPFGITAREILEDYAGGMCDGL-K 287 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A PGG+ L A + MD++ + + GS LGTA + +D +++ L F Sbjct: 288 LKAWQPGGAGTDFLTADHLD-LPMDFEHIGKAGSRLGTALAMAVDHQINMVSLTRNLEEF 346 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W +++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 347 FARESCGWCTPCRDGLPWSVKILQALERGEGQPGDIETLEQLCRLLGPGKTFCAHAPGAV 406 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNF 424 P+Q IK FR I ++ +F Sbjct: 407 EPLQSAIKYFRDEFAAGIAPKYQGHF 432 >gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 617 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 161/424 (37%), Positives = 253/424 (59%), Gaps = 6/424 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 M+ Q RI G+ ++ +++G + + + G + +I E+KASGLRGRGGAG Sbjct: 132 MIQPQVRIVLRNCGIIDPTNIDHYLAQGGYSGMARAFSLGPEQVIEEMKASGLRGRGGAG 191 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F +D+ Y++ NADE +PG DR ++ +PH ++EG +IA +AIGA Sbjct: 192 FPTGVKWGFARSSVADQ-KYVICNADEGDPGAFMDRSVLEGDPHAVLEGLLIAGYAIGAT 250 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ E LQ A+ + G LG+N G+D DI + GAGA++CGEET+L Sbjct: 251 VGYVYCRAEYPLAIERLQDAIAQMREQGFLGANILGSGFDFDIKIKKGAGAFVCGEETSL 310 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 ++S+EGK+G P KPPFPA GL+G PT +NNVE++A V I+ +GA+WY+GFG E +RG Sbjct: 311 MQSIEGKRGMPLSKPPFPAVSGLFGKPTNINNVETLAAVSAIMEKGAAWYAGFGTEKSRG 370 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK F+++G + +E M I +I++ GG+ GG AV GG S C+PA Q Sbjct: 371 TKTFALAGKITRTGLIEVPMGIRLRTIIDEVGGGVLGG-KPFKAVQTGGPSGGCIPA-QF 428 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ L +GS +G+ +IV+D + ++ F ++ESCG+C PCR GT + Sbjct: 429 IDLEVDYEHLASVGSIMGSGGMIVIDAESCMVDMARYFLTFTENESCGKCVPCRMGTQHL 488 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +R++ + +G ++D L ++ ++ ++C LG AA P+ ++ F I+ Sbjct: 489 LRILTGITQGKGTLDQLDTLRKIGDTMKSASLCGLGQTAANPVLTTLQYFEEEYRAHIED 548 Query: 419 YHRC 422 H+C Sbjct: 549 -HKC 551 >gi|300717647|ref|YP_003742450.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661] gi|299063483|emb|CAX60603.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661] Length = 448 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 166/395 (42%), Positives = 233/395 (58%), Gaps = 5/395 (1%) Query: 25 SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 S+ + DK L+ +D I+ VK SGL+GRGGAGFSTG+KWS MPK S YL+ N Sbjct: 33 SKNGYAGADKALKTMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCN 92 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADE EPGT KDR +M PH L+EG +I++FA+ + +I++RGE+I +L+ A+ E Sbjct: 93 ADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKTYRGYIFLRGEYIEAAVNLRRAIAEA 152 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 +G LG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G + Sbjct: 153 TEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAW 212 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PT VNNVE+++ VP IL G WY G ++ GTK+ SG V P E T Sbjct: 213 GKPTCVNNVETLSNVPAILANGVDWYKGISTSDDTGTKMMGFSGRVKNPGVWELPFGTTA 272 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 E++E + GG+R G A PGG+ L + M++ + + GS LGTA + Sbjct: 273 REILEDYAGGMRDGL-KFKAWQPGGAGTDFLTESHL-DLPMEFASIGKAGSRLGTALAMA 330 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 +D ++ + L F+ ESCG CTPCR+G W ++++ L + Q +I+ L ++ Sbjct: 331 VDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPGDIETLLQLC 390 Query: 383 KNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + + G+T CA A P+Q IK FR E I Sbjct: 391 RQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425 >gi|77917824|ref|YP_355639.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77543907|gb|ABA87469.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 425 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 179/430 (41%), Positives = 254/430 (59%), Gaps = 11/430 (2%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWII-NEVKASGLRGRGGAG 59 M T + +F N Q L G + + K L+ + EVKASGLRGRGGAG Sbjct: 1 MRTCEPLLFKNRRAGQTVFLEGYRKTGGYRGLQKALQDMTPASVREEVKASGLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSF P + YLV N DE EPGT KDR ++ +PH L+EG +I+ +A+G Sbjct: 61 FPTGVKWSFFPSDNAGE-KYLVCNGDEMEPGTFKDRQLLLADPHHLLEGVIISCYALGIG 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 A+I++R + + +L+ A+ E +GLLG N G+ ++ VH AG YICGEETAL Sbjct: 120 TAYIFLRDAYRQCAANLERAIAEAEEAGLLGDNILGSGFCCEVHVHRSAGRYICGEETAL 179 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNR 237 L SLEG + PR KPPFPA GL+G PT +NN+E++A +P I+ GA+WY G E Sbjct: 180 LNSLEGLRPNPRSKPPFPAVKGLFGKPTALNNIETLANIPHIITGGAAWYKGLALTEQGA 239 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPA 295 GTKL+ ++GH+ PC VE + + ELI GG+ W N A +PGG+S P L A Sbjct: 240 GTKLYGLAGHLETPCCVELPLGMPLGELIRDFGGGV---WQNRSFKACLPGGASTPYLTA 296 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 M A +DY+ L+++G+ LGT V+V D T ++ L F+ ESCG CTPCR+G Sbjct: 297 EHMDVA-LDYEPLEQVGTRLGTGGVVVFDDRTCMVAVTLNLLRFFARESCGWCTPCRDGL 355 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + ++ERL +G + ++ +L E +I GR+ CAL A P+ GL+++F +E+ Sbjct: 356 PLVCWLLERLERGEGSREDLAMLREQLLHINGRSFCALALGAMGPVDGLLRHFAEELEDH 415 Query: 416 IDQYHRCNFQ 425 + + RC FQ Sbjct: 416 V-RLGRCPFQ 424 >gi|110806247|ref|YP_689767.1| NADH dehydrogenase I subunit F [Shigella flexneri 5 str. 8401] gi|110615795|gb|ABF04462.1| NADH dehydrogenase I chain F [Shigella flexneri 5 str. 8401] Length = 445 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 163/380 (42%), Positives = 228/380 (60%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICG+ETAL+ LEG + PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGDETALINFLEGHRAYPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D +++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 607 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 162/418 (38%), Positives = 242/418 (57%), Gaps = 6/418 (1%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMK 65 R+ N+ + S+ + G ++ K E + +I VK SGLRGRGGAGF G+K Sbjct: 182 RLLENVGKVDPASIESYLQNGGYEAARKAFAEYSPEQVIGIVKDSGLRGRGGAGFPVGVK 241 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSF+PK + Y++ NADE EPGT KDR +M P LIEG ++ +AIGA +IYV Sbjct: 242 WSFVPK--GEMQKYVICNADEGEPGTFKDRVLMEENPQQLIEGMLLCGYAIGATLGYIYV 299 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE+ R E LQ+A+D+ A G LG +D DI V G GAY+CGEET+L+ S+EG Sbjct: 300 RGEYRRSIERLQSAIDQARAKGFLGKKIFGSNFDFDIFVKEGGGAYVCGEETSLINSMEG 359 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR++PPFPA G G P+ VNNVE+++ +P I+ RGA W+ G GTKL+ + Sbjct: 360 KRGYPRVRPPFPAAAGFMGMPSNVNNVETLSSIPMIVARGADWFKSVGTATCAGTKLYCL 419 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG VN VE M T ++I+ GG++ G A + G + + + +D Sbjct: 420 SGKVNQTGLVELPMGATLRQMIDTFGGGMKSGSSFKFAQVGGAAGG--ILGADLMDLPLD 477 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 D + G LG+ V+V D+ T + + + F++HESCGQC PC+ GT + V ++ Sbjct: 478 IDSTIKAGVTLGSGVVLVCDQETCAVDFLLNVLNFFEHESCGQCIPCKLGTSQLHYVAQK 537 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 A++++I L+ + +K ++ ++CALG + PI+ +I+NFR + D + C Sbjct: 538 FAMREAEEKDIQLMIDTAKMMKLASLCALGQSPILPIETMIRNFREEFVKHCDPDYEC 595 >gi|37526973|ref|NP_930317.1| NADH dehydrogenase I subunit F [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786406|emb|CAE15459.1| NADH dehydrogenase I chain F (NADH-ubiquinone oxidoreductase chain 6) (NUO6) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 454 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 32 LDEYRSKSGYRGAEKALKSMSPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 91 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ L+ Sbjct: 92 YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRK 151 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 152 AIEEAKAAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 211 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVE++ VP+IL G WY G G+ + GTKL SG V P E Sbjct: 212 TSGAWGKPTCVNNVETLCNVPSILEYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNPGLWE 271 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G A PGG+ L A + MD++ + + GS L Sbjct: 272 LPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTAEHL-DLPMDFENIAKAGSRL 329 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ L F+ ESCG CTPCR+G W ++++ + +G Q +I Sbjct: 330 GTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIERGEGQPGDI 389 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L ++ + + G T CA A P+Q IK FR E I Sbjct: 390 ETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 431 >gi|163751850|ref|ZP_02159065.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99] gi|161328266|gb|EDP99428.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99] Length = 458 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 165/412 (40%), Positives = 243/412 (58%), Gaps = 12/412 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRP 77 LS+ +S G +D + + +E D +++ +K S LRGRGGAGF TG+KWSF+P+ + R Sbjct: 20 QLSEYLSHGGYDGLTRAMEMSADELLDSIKQSNLRGRGGAGFPTGLKWSFVPRGADAPRE 79 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+VNADE EPG KDR ++ PH +IEG +I +GA +I++RG++ E LQ Sbjct: 80 KYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEERLQ 139 Query: 138 AAVDECYASGLLGSN------SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 A++EC LLG + ++ +I +H AG YICGEETAL+ ++EGK+ PR Sbjct: 140 QAIEECKQHQLLGRDILGRGIQGQAFNFEIHLHSSAGRYICGEETALINAMEGKRATPRA 199 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFP VGL+G PT VNNVE+ +P I+ G+ W+ G+ + GTK+F +SG V P Sbjct: 200 KPPFPQVVGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRVKRP 259 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M + E+IE H GG+ G+ L +PGG S L + A+MDYD + ++ Sbjct: 260 GLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DALMDYDEISKL 317 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GT +I++D + + L F+ ESCG CTPCR+G W + ++E++ +G + Sbjct: 318 GSRMGTGTIIILDDKYCPVSMVLNLVRFFAQESCGWCTPCRDGLPWAVSLLEKIERGEGE 377 Query: 372 KREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++ID L ++ G T CAL A P+Q +K FR E I H+C Sbjct: 378 PKDIDQLEDLCDFAAPGNTFCALAPGAVEPLQSALKYFRQDFETHIK--HQC 427 >gi|114566555|ref|YP_753709.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337490|gb|ABI68338.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 407 Score = 309 bits (791), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 169/408 (41%), Positives = 242/408 (59%), Gaps = 11/408 (2%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ RI YG + + D ++ G + +++K + +I EVK S LRGRGGAGF Sbjct: 1 MAEEMRIVLRNYGKIDPLKIDDYIAAGGYKSLEKARSMKQTEVIEEVKKSNLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + GMKW+F +V S+ Y+V NADE EPGT KDR IM ++P ++IEG I +AIG+ Sbjct: 61 NAGMKWNFSYQVQSEE-KYVVCNADEGEPGTYKDRIIMENDPQSVIEGMAICGYAIGSKK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGE+ + L A+ + A G+LG D D+ V G GAY+CGEE+AL+E Sbjct: 120 GYIYCRGEYPYVVDILNQAIAQAKAKGVLG-------DFDVEVRMGGGAYVCGEESALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G+PR KPPFP +GL+ PT VNNVE+ A +P I+ +G WY G N GTK Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWQKPTIVNNVETFANIPIIIEKGGDWYKAIGAPNYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G VN E + T E+I G G AV GG+S +P + Sbjct: 233 VLTLTGDVNNRTFFEVPTNTTIREVIFGLG-GGVAGGKKFKAVQIGGTSGGFIPESNLDT 291 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I D+D + +G+ LG+ AV VMD S DI+ + R++ F++HESCG+C+PCREGT M Sbjct: 292 PI-DFDSMNSIGAVLGSGAVFVMDESRDIVNVVARIAKFFEHESCGKCSPCREGTKRMHE 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G +++LL + K + +C LG AA P+ IKNF Sbjct: 351 MMERLNAGEGNAEDVELLGRLGKVMSVACLCGLGQAAPAPVLTTIKNF 398 >gi|168700382|ref|ZP_02732659.1| NuoF2 NADH I CHAIN F [Gemmata obscuriglobus UQM 2246] Length = 455 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 183/422 (43%), Positives = 260/422 (61%), Gaps = 26/422 (6%) Query: 27 GHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G ++ + ++L+ + + +VK +GLRGRGGAGF TG+KW+F+PK P YL VNAD Sbjct: 26 GGYETIARVLKDKQPLDVTTQVKDAGLRGRGGAGFPTGLKWTFLPKD-HPGPVYLCVNAD 84 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEP T +R +M +PH ++EG ++A +AI + AF YVR E+ SL AAV+E YA Sbjct: 85 ESEPCTYNNRILMEKDPHQVLEGIMLACYAIKSPKAFYYVRYEYGDSYRSLAAAVEELYA 144 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G LG +D+DI++H GAGAYICGEET L+ESLEGK+ PR+KPPFPA G + Sbjct: 145 AGFLGKGIFGSSFDLDIVLHRGAGAYICGEETGLIESLEGKRAWPRIKPPFPAIEGAFRK 204 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFG----RENNR-----GTKLFSISGHVNYPCTVE 255 PT VNNVE++A V I++RG W+ G +N R G KL++++GHV VE Sbjct: 205 PTIVNNVETLACVTQIMKRGKEWFQSLGVPPDPKNPRDAGSYGPKLYTLAGHVEKSVCVE 264 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGA--------IMDYD 306 M IT +L+EKH GG+ G AV PGG S+ + ++G +D++ Sbjct: 265 VPMGITIRDLVEKHGGGVWKG-RKAKAVNPGGLSMGFVDVNAPLKGEDGKTEYDIPLDFN 323 Query: 307 GLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 G + GLGTAAV V+D T ++ + + F+ HESCGQCTPCREGTGWM+++ +RL Sbjct: 324 GPGRVQCLGLGTAAVTVIDDQTSMVDVLHNVCQFFSHESCGQCTPCREGTGWMLKITDRL 383 Query: 366 VKGIAQKREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +G+ +K ++D+L +V+ I G TIC L D A WP++ I+ FR E I + Sbjct: 384 RRGLGRKEDLDILVDVADRIGIMPGTTICGLSDGAGWPVKTAIRKFRAEFEAAIKSGAKS 443 Query: 423 NF 424 + Sbjct: 444 KY 445 >gi|16761249|ref|NP_456866.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141055|ref|NP_804397.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052940|ref|ZP_03345818.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417788|ref|ZP_03350900.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427014|ref|ZP_03359764.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213647300|ref|ZP_03377353.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829696|ref|ZP_06547237.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25285050|pir||AB0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503548|emb|CAD07556.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhi] gi|29136681|gb|AAO68246.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 445 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 163/380 (42%), Positives = 227/380 (59%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|157736572|ref|YP_001489255.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018] gi|157698426|gb|ABV66586.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018] Length = 416 Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 166/391 (42%), Positives = 242/391 (61%), Gaps = 4/391 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L +++ G + ++DK+ + + EV SGLRG+GG G + G KW MP V +RP Y Sbjct: 18 LEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGAACGPKWELMPPV-DERPRY 76 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L+VN DESEPGT KDR I +++PH LIEG + +AI A+ A+IY+RGE+ + L A Sbjct: 77 LIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANHAYIYIRGEYKFFIDRLNEA 136 Query: 140 VDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + E Y + ++G K + VDI VH G GAYICGE++AL+ESLEGK+G PRLKP Sbjct: 137 IKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSALIESLEGKRGHPRLKPHGKE 196 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + P TVNNVE+I+ VP I+ GA Y+ +G E + GT LF+ISG V P E + Sbjct: 197 CEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPGTMLFAISGPVKNPGVYEMA 256 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + + GG+ G L A+IPGGSS P L A ++ A++DY+ + E+GS LGT Sbjct: 257 YGNKMIDFLNVLGGGMLEG-KKLKAIIPGGSSCPILTASEVEKAVLDYESMWEIGSTLGT 315 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +IV+D T +++ + FY HESCGQCTPCREGTGW+ +++++++ G A +++ Sbjct: 316 GGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWIDKILKKVIAGEASDKDLKT 375 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + +V + G+T+C A I ++K F Sbjct: 376 IMDVCDTLNGKTVCVFAPAVKDIIASIVKKF 406 >gi|213853108|ref|ZP_03382640.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 436 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/380 (42%), Positives = 227/380 (59%), Gaps = 4/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+Q IK FR E I Q Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425 >gi|154249673|ref|YP_001410498.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154153609|gb|ABS60841.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 539 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 164/418 (39%), Positives = 245/418 (58%), Gaps = 6/418 (1%) Query: 5 QDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + RI T N+ + +++ + ++R + + K L+ + +I E+K SGLRGRGGAGF TG Sbjct: 106 ETRIVTRNIGVIDPRNIDEYIARDGYFALSKALKMTPEEVIKEIKDSGLRGRGGAGFPTG 165 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F K +D+ Y+V NADE EPGT KDR IM +PH++IE +IA +A+GA +I Sbjct: 166 LKWEFTAKTKADQ-KYIVCNADEGEPGTFKDRLIMEGDPHSVIEAMIIAGYAVGATKGYI 224 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE+ E+L+ A+ + Y G LG + G++ D+ V GAGAY+CGEETALLES+ Sbjct: 225 YIRGEYYNSVENLKKAIKDAYEYGFLGEDILGSGFNFDLTVRLGAGAYVCGEETALLESI 284 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK G+PRLKPP+P GL+G PT +NNVE++A VP I+ GA W+ G N+ GTK+F Sbjct: 285 EGKSGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAQWFRSIGTPNSPGTKVF 344 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 + G VN VE M +T E++ + G L ++ G Sbjct: 345 CLVGDVNRRGMVELPMGVTVREVL--YGFGGGVKGGRELKMVQTGGLAGTFIGPDKLDVP 402 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DYD +K G LG+ ++ +D S ++ F++HESCG+CTPCREGT ++ Sbjct: 403 LDYDSMKNYGVSLGSGVILAIDDSHCVVDIALNTMEFFRHESCGKCTPCREGTRLACEIL 462 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY 419 E++ K A ++ L +++ + C LG + P+ LI NF+ I+ D+Y Sbjct: 463 EKMTKFEATMDDLKYLEQIAILSADASFCGLGQSINVPLLSLINNFKEEFIQHIKDKY 520 >gi|307069590|ref|YP_003878067.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus Zinderia insecticola CARI] gi|306482850|gb|ADM89721.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus Zinderia insecticola CARI] Length = 431 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 159/408 (38%), Positives = 244/408 (59%), Gaps = 11/408 (2%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + RG + + +I+ ++ IIN +K + LRGRGGAGF T +KW+F+ K + Sbjct: 23 KIKNYIKRGGYKTIRRIIRNKISKNEIINNLKLTRLRGRGGAGFLTWIKWNFIDK-NTYY 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ N DE EPGT KD I + PH +IEG +IA++ + + Y+ GE + Sbjct: 82 QKYLICNTDEGEPGTFKDLQITINNPHLIIEGMLIAAYTLNIDIGYNYIHGEVFKIYNIF 141 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV E Y LG N K + ++ G G+YICGEE+AL+ES+EGKKGQPR KPPF Sbjct: 142 KKAVLEAYKYNFLGYNIFKSKINFNLYCFRGYGSYICGEESALIESIEGKKGQPRFKPPF 201 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN+GL+ T +NN E+ + + +L+ G Y F N GTK+FSI+G++ P E Sbjct: 202 PANIGLFNKSTLINNAETFSNITILLKIGIKKYLNFSNSKNGGTKIFSITGNIKKPGNYE 261 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + I+ +LI K GG + +L A+IPGG S P + +++ MDYD + + S L Sbjct: 262 APLGISLSKLI-KLAGGFK---KDLKAIIPGGISTPIIKGKKLKYIYMDYDEILKFKSML 317 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ A+I+++ I+K + +S FY ESCG+C PCREG W+M++++++ A+ +++ Sbjct: 318 GSGAIILINNKICILKCLLNISNFYYKESCGKCVPCREGIIWIMKLLKKIKNNKAKLKDL 377 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKN-FRPLIEERIDQYHRC 422 DL+ + NI G TICA GDA + I+ IKN ++ I I Y++C Sbjct: 378 DLILSIINNITGNTICAFGDAIYFSIKSYIKNYYKEFILHII--YNKC 423 >gi|315635735|ref|ZP_07890998.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22] gi|315480032|gb|EFU70702.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22] Length = 416 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 165/391 (42%), Positives = 242/391 (61%), Gaps = 4/391 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L +++ G + ++DK+ + + EV SGLRG+GG G + G KW MP V +RP Y Sbjct: 18 LEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGAACGPKWELMPPV-DERPRY 76 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L+VN DESEPGT KDR I +++PH LIEG + +AI A+ A+IY+RGE+ + L A Sbjct: 77 LIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANHAYIYIRGEYKFFIDRLNEA 136 Query: 140 VDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + E Y + ++G K + VDI VH G GAYICGE++AL+ESLEGK+G PRLKP Sbjct: 137 IKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSALIESLEGKRGHPRLKPHGKE 196 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + P TVNNVE+I+ VP I+ GA Y+ +G E + GT LF+ISG V P E + Sbjct: 197 CEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPGTMLFAISGPVKNPGVYEMA 256 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + + GG+ G L A+IPGGSS P L A ++ A++DY+ + ++GS LGT Sbjct: 257 YGNKMIDFLNVLGGGMIDG-KKLKAIIPGGSSCPILTASEVEKAVLDYESMWDIGSTLGT 315 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +IV+D T +++ + FY HESCGQCTPCREGTGW+ +++++++ G A +++ Sbjct: 316 GGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWIDKILKKVIAGEASDKDLKT 375 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + +V + G+T+C A I ++K F Sbjct: 376 IMDVCDTLNGKTVCVFAPAVKDIIASIVKKF 406 >gi|170727208|ref|YP_001761234.1| NADH-quinone oxidoreductase subunit F [Shewanella woodyi ATCC 51908] gi|169812555|gb|ACA87139.1| NADH-quinone oxidoreductase, F subunit [Shewanella woodyi ATCC 51908] Length = 454 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 163/403 (40%), Positives = 232/403 (57%), Gaps = 5/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRP 77 S+ + G + K L + ++ +++ +K S LRGRGGAGF TG+KWSF+P+ + P Sbjct: 22 SIEQYQNHGGYQGFRKSLTQSQEQLLDTLKESNLRGRGGAGFPTGLKWSFVPRGDDAPSP 81 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+VNADE EPGT KDR +M PH +IEG +I + +GA ++++RG++ E + Sbjct: 82 RYLIVNADEMEPGTFKDRMLMEKTPHQIIEGLLIGAQTLGASIGYVFLRGDYYLAEERMT 141 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ EC + LLG N G D DI +H AG YICGEETAL+ S+EGK+ PR KPPFP Sbjct: 142 KALQECRDANLLGKNILGSGLDFDIHLHTSAGRYICGEETALINSMEGKRANPRAKPPFP 201 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE+ +P I+ G W+ G ++ GTK+F +SG V P E Sbjct: 202 QVAGLWGKPTIVNNVETFCNLPHIINFGPIWFKELGLNDDAGTKIFGVSGRVKRPGLWEL 261 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M E+IE+H GG+ G+ L +PGG S L + MDYD + + GS +G Sbjct: 262 PMGTPIREIIEQHAGGMCDGY-TLKGFLPGGGSTDFLVTEHLD-IPMDYDTIGKQGSRMG 319 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T +I++D + + L F+ ESCG CTPCR+G W ++E++ +G + +I Sbjct: 320 TGTIIILDDRYCPVAMVLNLIKFFAQESCGWCTPCRDGLPWAQVLLEKIERGEGEPEDIT 379 Query: 377 LLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L E+ + G T CAL A P+Q +K FR E I Q Sbjct: 380 QLEELCRFAAPGNTFCALAPGAVEPLQSALKYFREDFEAHISQ 422 >gi|206900196|ref|YP_002251393.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] gi|206739299|gb|ACI18357.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] Length = 545 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 167/406 (41%), Positives = 245/406 (60%), Gaps = 8/406 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + +++G ++ + K L E + +I E+KASGLRGRGGAGF G+KW F KV SD Sbjct: 128 ESIEEYIAQGGFEGLSKALSEMTPENVIKEIKASGLRGRGGAGFPAGLKWEFTYKVPSDE 187 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V NADE EPGT KDR I+ +P ++E IA +AIGA +IY+RGE+ + + Sbjct: 188 -KYVVCNADEGEPGTFKDRLILEGDPFRIVEAMAIAGYAIGAKKGYIYIRGEYKLSIDRM 246 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 Q A++ GLLG N LG + D+ V GAGAYICGEETAL+ESLEGK+G PR+KPP Sbjct: 247 QKAINVAKEYGLLGDNI-LGTNFSFDLEVRKGAGAYICGEETALIESLEGKRGIPRIKPP 305 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +P + GL PT VNNVE++A VP I++ GA W+ FG E+ GTK+++I G V + Sbjct: 306 YPVSQGLRNKPTLVNNVETLANVPDIIKNGAQWFRQFGTESCPGTKVYTILGDVVNAGLI 365 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M ++I ++ GGI+ G A++ G + +M MD+D LKE + Sbjct: 366 EVEMGTPLRDIIFQYGGGIKDGKKFKCALVGGAAG--AFLGNEMLDVKMDFDNLKEYKAV 423 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A++VM I+ + + F+KHESCG+CTPCR GT ++ ++E+ + + Sbjct: 424 LGSGAILVMSDGVCIVDMLKSILRFFKHESCGRCTPCRVGTKRLVEIIEKFASLEGTEED 483 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY 419 +D + +S ++ + C LG + P+ IK FR I D+Y Sbjct: 484 LDEMLNISLVMKDTSFCPLGQSVYLPVSSAIKYFRDEFISHFKDKY 529 >gi|118474520|ref|YP_891366.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp. fetus 82-40] gi|261885722|ref|ZP_06009761.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413746|gb|ABK82166.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp. fetus 82-40] Length = 406 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 180/397 (45%), Positives = 244/397 (61%), Gaps = 16/397 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G + + + G + N++ IL+ R+ I+ V SGLRG+GG G S G KW M SD Sbjct: 12 NGYKIDVAKANGAYLNLENILKMDRNSIVEAVDKSGLRGKGGGGGSCGTKWKNMLAWESD 71 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + YLVVN DESEPGTCKD+ I+ +PH LIEG +I+S+A+GA A++Y+RGE+ RE + Sbjct: 72 K-RYLVVNGDESEPGTCKDKYILNLDPHLLIEGIIISSYALGAKRAYVYIRGEYEREFIT 130 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L A+ E A+ LG D++IIV+ GAGAYICGE+TALLES+EGK+G PRLKP Sbjct: 131 LTNAIKE--AANELG-------DLEIIVYKGAGAYICGEKTALLESIEGKRGHPRLKPHN 181 Query: 196 PANVG-LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 A L+GC VNNVE+IA +P I++ G Y G E + GT LF++SG VN PC Sbjct: 182 KAEPDFLFGCACVVNNVETIASIPFIVKNGWEAYRSVGTEKSPGTLLFAVSGCVNTPCVK 241 Query: 255 EESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + I GG+ W N L AVIPGGSS L ++ A +DY+ LKE Sbjct: 242 EMPFGTKMIDFINDFGGGV---WKNRELKAVIPGGSSAAVLTKDEVLKATLDYESLKEFK 298 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT ++V D + + + + L FY ESCGQCTPCREG GW +RV++++V+G Sbjct: 299 SALGTGGMMVFDDTISMPEVLLNLLEFYTEESCGQCTPCREGCGWALRVVKKIVEGEGSL 358 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 R++D L ++S ++G+TIC A I G I F Sbjct: 359 RDLDTLKDISYMLDGKTICVFAPAVKDVIMGFITKFE 395 >gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 599 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 158/408 (38%), Positives = 251/408 (61%), Gaps = 10/408 (2%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++ + ++R + + K+L+ D ++ EVK SGLRGRGGAGF TG+KW K ++ Sbjct: 130 NIEEYIARDGYFALAKVLKHMSPDQVVEEVKKSGLRGRGGAGFPTGLKWELTRKSKGEK- 188 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG DR ++ +PHT++E IA +AIGA+ +IYVR E+ E L Sbjct: 189 KYIICNADEGDPGAFMDRSVLEGDPHTILEAMAIAGYAIGANQGYIYVRAEYPLAIERLN 248 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 AA+ + G LG N S G+D++I + GAGA++CGEETAL+ S+EGK+GQPR+KPP Sbjct: 249 AAISQAKEYGFLGENIMDSNFGFDIEIRI--GAGAFVCGEETALIASIEGKRGQPRVKPP 306 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +PA G++GCPT +NNVE++A +P I+ +GA W+ G E + GTK+F+++G + V Sbjct: 307 YPAQSGVWGCPTVINNVETLACIPPIIIKGADWFRSIGTEKSPGTKVFALAGKITNTGLV 366 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M IT EL+ + GG G + AV GG S C+P+ + DY+ L+++G+ Sbjct: 367 EVPMGITLKELLYEIGGGSSTG-KKIKAVQTGGPSGGCIPSDYFDTPV-DYESLQKLGAI 424 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +IVMD ++ F ESCG+CTPCREGT M+++++++ G +R+ Sbjct: 425 MGSGGMIVMDEDDCMVDVARFFLEFTVDESCGKCTPCREGTRQMLKILDKITSGEGTERD 484 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++ L ++ I+ ++C LG A P+ ++ +R E + + RC Sbjct: 485 LEELERLANVIKDTSLCGLGQTAPNPVLSTLQYYRDEYEAHVKE-KRC 531 >gi|147678346|ref|YP_001212561.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146274443|dbj|BAF60192.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 551 Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 166/416 (39%), Positives = 244/416 (58%), Gaps = 5/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFSTG 63 Q + N + S+ + + R + + K+L + +I EVK SGLRGRGGAGFSTG Sbjct: 128 QKIVLRNTIYIDPLSIEEYIGRDGYAALAKVLTQMTPAQVIEEVKKSGLRGRGGAGFSTG 187 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F P Y+V N DE +PG DR ++ +PH++IEG I +AIGA ++ Sbjct: 188 MKWGFT-AAAPGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGYAIGAEQGYV 246 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ + L A+++ GLLG N ++ DI + GAGA++CGEETALL S+ Sbjct: 247 YVRAEYPLAIQRLSYAIEKAREYGLLGKNIFGTSFNFDIEIRIGAGAFVCGEETALLASI 306 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G+PR +PPFPA G++G PT +NNVE+ A + I+ +GA WY+ G E ++GTK+F Sbjct: 307 EGKRGEPRPRPPFPAQSGVWGKPTVINNVETWANIAPIILKGADWYASIGTEKSKGTKVF 366 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G +N VE M IT E++ + GGI AV GG S C+PA + I Sbjct: 367 ALAGRINNTGIVEVPMGITLREIVYEIGGGIP-RKKQFKAVQTGGPSGGCIPAEHLDTPI 425 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DYD L +G+ +G+ +IVMD T ++ F ESCG+C+PCR GT M ++ Sbjct: 426 -DYDSLGALGAIMGSGGMIVMDEDTCMVDIAKFFLDFVVDESCGKCSPCRIGTKRMYEIL 484 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +R+ G ++ +I+LL E++ I+ +C LG A P+ I+ FR EE I + Sbjct: 485 DRITNGQGREGDIELLSELATTIKNTALCGLGQTAPNPVLSTIRYFRDEYEEHIKE 540 >gi|290475913|ref|YP_003468808.1| NADH dehydrogenase I subunit F [Xenorhabdus bovienii SS-2004] gi|289175241|emb|CBJ82044.1| NADH dehydrogenase I chain F [Xenorhabdus bovienii SS-2004] Length = 454 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 171/403 (42%), Positives = 237/403 (58%), Gaps = 9/403 (2%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + S+ + +K L KG D + VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 32 LDEYRSKSGYKGAEKAL-KGMVPDEVTTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNI 90 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ L+ Sbjct: 91 RYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLR 150 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 151 RAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFP 210 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTV 254 A G++G PT VNNVE++ VP IL G WY G G+ + GTKL SG V P Sbjct: 211 ATSGVWGKPTCVNNVETLCNVPAILEYGKEWYIGLSEGKSKDAGTKLMGFSGRVKNPGVW 270 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E T E++E + GG+R G A PGG+ L + MD++ + + GS Sbjct: 271 ELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTVDHL-DLPMDFENIAKAGSR 328 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGTA + +D +I+ L F+ ESCG CTPCR+G W ++++ + G Q + Sbjct: 329 LGTALAMAVDHEINIVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIENGKGQPGD 388 Query: 375 IDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 389 IETLEQLCRFLGPGKTFCAHAPGAMEPLQSAIKYFRDEFEAGI 431 >gi|213581185|ref|ZP_03363011.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 420 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 161/375 (42%), Positives = 225/375 (60%), Gaps = 4/375 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405 Query: 399 WPIQGLIKNFRPLIE 413 P+Q IK FR E Sbjct: 406 EPLQSAIKYFREEFE 420 >gi|217968066|ref|YP_002353572.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217337165|gb|ACK42958.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 545 Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 163/395 (41%), Positives = 238/395 (60%), Gaps = 7/395 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + ++ G ++ + K L E + +I E+K SGLRGRGGAGF G+KW F K+ SD Sbjct: 128 ESIEEYIANGGFEGLSKALSEMTPEDVIKEIKESGLRGRGGAGFPAGLKWEFTYKIPSDE 187 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V NADE EPGT KDR I+ +P ++E IA +A+GA +IY+RGE+ E + Sbjct: 188 -KYVVCNADEGEPGTFKDRLILEGDPFRIVEAMTIAGYAVGAKKGYIYIRGEYKLSIERM 246 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 Q A++ GLLG N LG + DI V GAGAYICGEETAL+ESLEGK+G PR+KPP Sbjct: 247 QKAINTAREYGLLGENI-LGTNFSFDIEVRKGAGAYICGEETALIESLEGKRGIPRIKPP 305 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +P + GL PT VNNVE++A VP I+R GA W+ FG E GTK+++I G V + Sbjct: 306 YPVSQGLRNKPTVVNNVETLANVPDIIRNGAKWFRQFGTEKCPGTKVYTILGDVVNAGLI 365 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M ++I ++ GGI+ G A++ G + +M MD++ LKE + Sbjct: 366 EVEMGTPLRDIIFQYGGGIKNGGKFKCALVGGAAG--AFLGEEMLDVKMDFENLKEYKAV 423 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A++VM I+ + + F+KHESCG+CTPCR GT ++ ++ER + + Sbjct: 424 LGSGAILVMSDGACIVDMLKSILRFFKHESCGRCTPCRVGTKRLVEIIERFASLEGTEED 483 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D + +S ++ + C LG + P+ +K FR Sbjct: 484 LDEMVNISLVMKDTSFCPLGQSVYLPVSSAVKYFR 518 >gi|317048935|ref|YP_004116583.1| NADH-quinone oxidoreductase subunit F [Pantoea sp. At-9b] gi|316950552|gb|ADU70027.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. At-9b] Length = 448 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 159/379 (41%), Positives = 225/379 (59%), Gaps = 4/379 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I+ VK SGL+GRGGAGF+TG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 49 QDEIVATVKDSGLKGRGGAGFNTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 108 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +G +G N G+D Sbjct: 109 QMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAANLRKAIAEATEAGFIGKNILGTGFD 168 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE+++ VP Sbjct: 169 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLSNVP 228 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I G WY + + GTK+ SG V P E T E++E + GG+R G Sbjct: 229 AIFLNGVEWYKNISKSEDTGTKMMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL- 287 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 A PGG+ L Q M++ + + GS LGTA + +D ++ + L Sbjct: 288 KFKAWQPGGAGTDFL-TDQHLDLPMEFASIGKAGSRLGTALAMAVDHEISMVSLVRNLEE 346 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAA 397 F+ ESCG CTPCR+G W ++++ L + Q +I+ L ++ + + G+T CA A Sbjct: 347 FFARESCGWCTPCRDGLPWSVKILRALEQKQGQPGDIETLQQLCRQLGPGKTFCAHAPGA 406 Query: 398 AWPIQGLIKNFRPLIEERI 416 P+Q IK FR E I Sbjct: 407 VEPLQSAIKYFREEFEAGI 425 >gi|257453971|ref|ZP_05619247.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60] gi|257448636|gb|EEV23603.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60] Length = 490 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 167/393 (42%), Positives = 231/393 (58%), Gaps = 7/393 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + L K + N +K + +RGRGGAGF+ G+KW+FM P YL+ NADE E Sbjct: 62 FEGLKNALAKSAKEVGNMIKDANVRGRGGAGFNAGLKWTFM-TPPDGGPRYLICNADEME 120 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR +M P LIEG +I+ +AIGA +I++RGE+I + L A+DEC A G Sbjct: 121 PGTFKDRLLMERLPFQLIEGMIISGYAIGATAGYIFIRGEYIEAAKRLNNALDECRAKGY 180 Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LG N GY D+ VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT Sbjct: 181 LGDNILGSGYSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVSGAWGRPTV 240 Query: 208 VNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 VNNVES+ +P I+ G WY G G+ N GTK+ SG VN P E T E+ Sbjct: 241 VNNVESLNNMPGIMLHGVEWYKGLAQGKSENPGTKIMGCSGLVNEPGLWELPFGTTAREI 300 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAVIVMD 324 I + G++ G L A +PGG+S L A + MD++ + + GS LGT ++V+D Sbjct: 301 IFDYAKGMKDG-RKLKAWLPGGASTDFLTASDEHLDLPMDFEPIMKAGSRLGTCLIMVVD 359 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S D++ L F+ ESCG CTPCR+G W ++ + + G Q +ID+L +++K+ Sbjct: 360 ESQDMVSLSLNLQKFFARESCGWCTPCRDGLPWGVKTLHAIDTGNGQPVDIDVLRQLTKD 419 Query: 385 I-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + G+T CA A P+Q +K F P E +I Sbjct: 420 LWLGKTFCAHAPGAVEPLQSALKYFLPEFEAKI 452 >gi|300723694|ref|YP_003713001.1| NADH dehydrogenase I subunit F [Xenorhabdus nematophila ATCC 19061] gi|297630218|emb|CBJ90869.1| NADH dehydrogenase I chain F [Xenorhabdus nematophila ATCC 19061] Length = 454 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 167/402 (41%), Positives = 236/402 (58%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + +K L+ D ++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 32 LDEYRSQNGYKGAEKALKGMAPDEVVALVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 91 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ L+ Sbjct: 92 YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRK 151 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E ++GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 152 AIEEAKSAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 211 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVE++ VP IL G WY G G+ + GTKL SG V P E Sbjct: 212 TSGAWGKPTCVNNVETLCNVPAILEHGKEWYIGLSEGKSKDAGTKLMGFSGRVKNPGLWE 271 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G A PGG+ L + MD++ + + GS L Sbjct: 272 LPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEDHLD-LPMDFESIAKAGSRL 329 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ L F+ ESCG CTPCR+G W ++++ + G Q +I Sbjct: 330 GTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIESGKGQPGDI 389 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L ++ + + G+T CA A P+Q IK FR E I Sbjct: 390 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 431 >gi|197285616|ref|YP_002151488.1| NADH dehydrogenase I subunit F [Proteus mirabilis HI4320] gi|227356119|ref|ZP_03840509.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906] gi|194683103|emb|CAR43660.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis HI4320] gi|227163764|gb|EEI48676.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906] Length = 454 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/409 (41%), Positives = 236/409 (57%), Gaps = 7/409 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + ++ + +K L+ D + +EVK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 32 LDEYRAKNGYKAAEKALKSMAPDEVTSEVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 91 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE EPGT KDR +M PH LIEG +I + A+ A+ +I++RGE+I + L+ Sbjct: 92 YILCNADEMEPGTYKDRLLMEELPHLLIEGMIIGAHALKAYRGYIFLRGEYIEAAKHLRH 151 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+G LG N G D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 152 AIEEAKAAGFLGKNIFGSGIDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 211 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V YP E Sbjct: 212 TSGAWGKPTCVNNVETLCNVPAIIEHGKDWYIGLSAGKSPDAGTKLMGFSGRVKYPGLWE 271 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L + MD+ + + GS L Sbjct: 272 LPFGTTAREILEDYAGGMRDGL-KLKAWQPGGAGTDFLTEDHL-DLPMDFGTIAKAGSRL 329 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ L F+ ESCG CTPCR+G W + ++ + KG + +I Sbjct: 330 GTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVEILRAIEKGQGRPGDI 389 Query: 376 DLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + L + +++ G T CA A P+Q IK FR E I Q N Sbjct: 390 ETLEHLCRSLSPGHTFCAHAPGAVEPLQSAIKYFREEFEAGIIQEDYTN 438 >gi|94676644|ref|YP_588821.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219794|gb|ABF13953.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 444 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 173/411 (42%), Positives = 242/411 (58%), Gaps = 8/411 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + S+ + K L++ D II+ +K SGL+GRGGAGF TG+KWS + S+ Y Sbjct: 25 LDEYKSKNGYVGAHKALKQTPDEIISLIKNSGLKGRGGAGFYTGIKWSLISVNASENIRY 84 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L+ NADE EPGT KDR +M PH LIEG +IA+FAI A+ ++I++RGE++ +LQ A Sbjct: 85 LLCNADEMEPGTYKDRLLMEQLPHLLIEGILIAAFAIRANRSYIFLRGEYVNAAANLQRA 144 Query: 140 VDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + E +GLLG N LG +D+++ +H GAG YICGEETALL SLEG++ PR KPPFPA Sbjct: 145 IIEANKAGLLGKNI-LGSEFDLELFLHTGAGRYICGEETALLNSLEGRRAIPRSKPPFPA 203 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 +G++G PT VNNVE++ VP IL G WY G N+ GTKL SG V P E Sbjct: 204 TIGVWGKPTCVNNVETLCNVPAILEYGLKWYKSINKGMSNDTGTKLMGFSGRVKKPGLWE 263 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT E++E + GGI G L A PGG+S L + MD++ L + GS L Sbjct: 264 LPFGITAREILEDYAGGIADGM-TLKAWQPGGASTGFLTPDYL-DIPMDFEHLIQAGSRL 321 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA I +D +++ + F+ ESCG CTPCR+G W ++++ L Q +I Sbjct: 322 GTALAIAVDDKINMVSLTRNIEEFFARESCGWCTPCRDGLPWSVKLLRALEDKQGQPEDI 381 Query: 376 DLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++L ++ + G+T CA A P++ +K FR E I + N + Sbjct: 382 NILEQLCTLLAPGKTFCAHAPGAIEPLKSALKYFRGEFEAGISDENLSNVR 432 >gi|254166582|ref|ZP_04873436.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] gi|289596482|ref|YP_003483178.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469] gi|197624192|gb|EDY36753.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] gi|289534269|gb|ADD08616.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469] Length = 404 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 162/395 (41%), Positives = 246/395 (62%), Gaps = 11/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 ++ D +++G + + K LE G+D II+EV+ SGL GRGGA F TG+K F+ K P Sbjct: 9 NVEDYLAQGGFKALRKALEYGQDEIISEVETSGLLGRGGAAFPTGLKMKFVRKE-RKTPK 67 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE EPGT KDR +M P+ ++EG +I+++AIGA F Y+R E+ + ++ Sbjct: 68 YIVANADEGEPGTFKDRVLMERNPYQILEGMIISAYAIGAKKGFFYIRYEYKEIAKDIER 127 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++E G+LG N SK +D++++V GAGAY+CGEETAL+ES+EGK+G PR+KPP+ Sbjct: 128 KIEELRRLGILGPNIYGSKFSFDIELVV--GAGAYVCGEETALMESIEGKRGYPRIKPPY 185 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE++A VP ++ G + YS G+E G KLFS+SG V P E Sbjct: 186 PAQYGLWGKPTLINNVETLANVPLVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVYE 245 Query: 256 ESM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 ++ T E+IE GG+ G + V+ GG + + + + + KE G Sbjct: 246 ANLGEKTIGEMIE-LAGGVVGKFK---GVMLGGGAAGFILTEEYLDMPLCFKDAKERGLF 301 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT +IV + S +I + ++ F++HESCGQC PCR GT M ++E++V+G +K + Sbjct: 302 LGTGDIIVFNESVNIWDILLNIAKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKED 361 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 I+ L +K ++ ++C LG +A + +KNFR Sbjct: 362 IEKLNATAKAMKIASLCPLGTSAMLAYESAMKNFR 396 >gi|15606024|ref|NP_213401.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5] gi|7387960|sp|O66841|NUOF_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|2983201|gb|AAC06800.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5] Length = 426 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 174/391 (44%), Positives = 239/391 (61%), Gaps = 11/391 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ + + G + ++K L + II+ V S LRGRGGAGF TG KW F V + P Sbjct: 30 SIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFA--VQNPGPR 87 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y + NADESEPGT KDR I+ +PH LIEG +I+S+AIGA+ A+IY+RGE+ L+ Sbjct: 88 YFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRD 147 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E G LG N G+D++I V GAGAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 148 AIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPV 207 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNVE+IA VP I+ G Y G + G KLF +SG V P E Sbjct: 208 QKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELP 267 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M+ T E+I K+ GG G + AV G ++ C + ++ MDY L G G GT Sbjct: 268 MNTTLREVIFKYAGGTLGN-KKVKAVFSG--ALDCFSSEEL-DIPMDYSPL---GFG-GT 319 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VIV+ DI++A +++ FY+HE+CGQCTPCR G ++E++ KG A +++ + Sbjct: 320 GTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEG 379 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++NI+ +IC LG A I+ ++ F Sbjct: 380 FDFVNRNIQPTSICGLGAVAGRLIRQTLEKF 410 >gi|146331922|gb|ABQ22467.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1 precursor-like protein [Callithrix jacchus] Length = 218 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/207 (67%), Positives = 166/207 (80%) Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG Sbjct: 1 TVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGG 60 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + GGWDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVMDRSTDI+KA Sbjct: 61 VTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKA 120 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 I RL FYKHESCGQCTPCREG WM +VM R V+G AQ EID L+E+SK IEG TICA Sbjct: 121 IARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICA 180 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQY 419 LGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 181 LGDGAAWPVQGLIRHFRPELEERMQRF 207 >gi|289548717|ref|YP_003473705.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484] gi|289182334|gb|ADC89578.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484] Length = 425 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 171/391 (43%), Positives = 239/391 (61%), Gaps = 11/391 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ + + G + ++K L + I++ V S LRGRGGAGF TG KW V + P Sbjct: 30 SIEEYLKDGGYQALEKALSMKPEEIVDWVDKSQLRGRGGAGFPTGRKWKLA--VQNPAPR 87 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADESEPGT KDR ++ +PH LIEG VI+++AIGA+ AFIY+RGE+ L+ Sbjct: 88 YLICNADESEPGTFKDRILIERDPHLLIEGIVISAYAIGANEAFIYIRGEYPAGYRILRD 147 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E G +G N G+D++I V GAGAYICGEE+AL+ESLEGK+G PR+KPP+P Sbjct: 148 AIEEARKKGFVGKNILGSGFDLEIYVARGAGAYICGEESALIESLEGKRGWPRIKPPYPV 207 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNVE++ +P I+ G Y G + G KLF +SG V P E Sbjct: 208 QYGLFGRPTVVNNVETLCNIPIIVGMGWEEYRYIGPSDYPGPKLFPVSGKVKKPGVYELP 267 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M+ T E+I K+ GG G + AV+ G ++ C A ++ MDY G G GT Sbjct: 268 MNTTLREVIFKYAGGTIGN-KKVKAVLSG--ALDCFSADEL-DTPMDYS---PFGFG-GT 319 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VIV+ DI++A +++ FY HESCGQCTPCR GT ++ER+VKG+A +++ D Sbjct: 320 GTVIVLTEEDDIVEACLKVAEFYAHESCGQCTPCRVGTHEQEYLLERIVKGVADEKDWDA 379 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++ I+ +IC LG A I+ ++ F Sbjct: 380 FVFVNRYIQPTSICGLGAVAGRLIKQAMEKF 410 >gi|90579193|ref|ZP_01235003.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14] gi|90440026|gb|EAS65207.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14] Length = 427 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 170/414 (41%), Positives = 256/414 (61%), Gaps = 5/414 (1%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N + + + ++ G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+ Sbjct: 8 NFHHPKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFLA 67 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K S P YLVVN DESEPG+ KDR ++ +PHT++EG + +S+ +GA AF+++RGE+ Sbjct: 68 KDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEYR 126 Query: 131 RERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + L+ AV E A+GL+G N G+D+D+ VH AG YICGEETALL +LEG +G P Sbjct: 127 EGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGNP 186 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R KPPFP GL+G PT VNNVESI +P I+ +GA W+ G+ + G+ ++ +SG V Sbjct: 187 RSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPVK 246 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + T ELI +H GG+ + L+ +PGG+S + + +D+DG Sbjct: 247 KPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHLD-VPLDWDGPA 304 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +GS LGT +IVMD + I + L+ F+ ESCG CTPCR+G +++ V+++ G Sbjct: 305 TVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETGE 364 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 A +++DLL+E+ + I T CAL A PI +K+F+ + E I+ RC Sbjct: 365 ATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFESHIEG-QRCT 417 >gi|256422831|ref|YP_003123484.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] gi|256037739|gb|ACU61283.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] Length = 426 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 159/382 (41%), Positives = 233/382 (60%), Gaps = 6/382 (1%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTL 105 V+ S L+GRGGAGFSTGMKWS +P + P YL+ NADE EPGT KDR ++ PH L Sbjct: 48 VQDSNLKGRGGAGFSTGMKWSLIPMDDKATHPKYLIANADEMEPGTFKDRLLLEGNPHQL 107 Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVH 164 IEG ++A++AI A A++++R + ++ ++ E Y +G LG++ G+ +++ +H Sbjct: 108 IEGMILAAYAIQADIAYVFLRWAYHEAATLIRKSIQEAYDAGYLGTDILGSGFHLEMYLH 167 Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 G G Y+CGEETALL +LEGK+ PR KPPFP GL+G PT VNNVE++ VP I+ G Sbjct: 168 TGVGRYMCGEETALLNALEGKRATPRAKPPFPQISGLFGKPTIVNNVETLCCVPHIVNNG 227 Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284 +W+ G ++ GTK++ +SG V P E M +T ELIE+H GG++ G++ L V+ Sbjct: 228 VAWFKGLSYSDDGGTKVYGVSGKVKRPGAWELPMGVTMRELIEEHAGGMKAGYE-LKGVL 286 Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344 PGG+S L Q MDY + GS LGT +IV+D T + + L F+ ES Sbjct: 287 PGGASTDFL-TTQHLDIKMDYKSVAAAGSRLGTGTMIVLDSGTCPVGFVHNLQHFFAQES 345 Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQG 403 CG CTPCREG W+ +++ L KG + +I+LL ++ + G T CAL A P+Q Sbjct: 346 CGWCTPCREGLPWVEKILLALEKGDGKPEDIELLQMHTQFLGPGNTFCALAPGAMEPLQS 405 Query: 404 LIKNFRPLIEERIDQYHRCNFQ 425 +K F E+ + ++ +C + Sbjct: 406 ALKYFMDDFEKHV-EHKKCPYN 426 >gi|218961474|ref|YP_001741249.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like) [Candidatus Cloacamonas acidaminovorans] gi|167730131|emb|CAO81043.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like) [Candidatus Cloacamonas acidaminovorans] Length = 520 Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 157/394 (39%), Positives = 246/394 (62%), Gaps = 7/394 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++ D + G + ++K L + + II EVK SGL+GRGGA F G+KWSF + D Sbjct: 121 ENIDDYIGAGGYVALEKALTNMQPNDIIAEVKKSGLKGRGGAAFPAGLKWSFTSAL--DV 178 Query: 77 PH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P Y+VVNADE EPGT KDR IM +PH L+EG ++ + A+GA A+IY+RGE+ Sbjct: 179 PQKYVVVNADEGEPGTFKDRLIMEGDPHQLLEGIILCARAVGASKAYIYIRGEYKLCIAR 238 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ A+ + Y G+LG N G+D+DI + GAGAY+CGEETAL+ESLEG +G PR KPP Sbjct: 239 LEKAIKQAYDYGILGKNIFDSGFDLDIELKIGAGAYVCGEETALIESLEGNRGTPRWKPP 298 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FP GL+ PT VNNVE++A VP I+ +GA + +G + GTK+++I G V YP Sbjct: 299 FPGVEGLWKAPTIVNNVETLANVPFIIAKGADEFLQYGTPDCPGTKVYTILGDVAYPGLC 358 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T +I + GG++ G+ A + GG++ LP ++ MD+ L + + Sbjct: 359 EVDMGTTLRTIINDYAGGMKKGF-RFKAALVGGAAGVILP-DRLLDVKMDFTSLNQYSAV 416 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ A++V++ I+ +W + F++HESCG+C+PC+ GT + +++ ++ KG + Sbjct: 417 LGSGAILVLNEHQSIVDLLWSILRFFRHESCGKCSPCKNGTQQLYQLISKIRKGNGTMED 476 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++L+ +++ ++ + CALG + ++ I+NF Sbjct: 477 VNLMLLIAETMQQTSFCALGQSPIMAVRSAIENF 510 >gi|114566322|ref|YP_753476.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337257|gb|ABI68105.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 408 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 169/390 (43%), Positives = 229/390 (58%), Gaps = 16/390 (4%) Query: 34 KILEKGRDW----IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 K LEK R +I EVK SGLRGRGGAGF+ GMKWSF+P Y+V N DE EP Sbjct: 30 KGLEKARGMTSKDLIEEVKKSGLRGRGGAGFNAGMKWSFVPPA---EVKYVVCNLDEGEP 86 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR I LIEG I AI A +IY RGE+ + L+ A+ G L Sbjct: 87 GTYKDRIICEKNAQALIEGMAICGVAINAKQGYIYCRGEYPFVVDLLRKAIQSAKDVGAL 146 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 G + DI V GAGAY+CGEETAL+ES+EG +G+PR KPPFP GL+G PT VN Sbjct: 147 G-------EFDIEVRMGAGAYVCGEETALIESIEGHRGEPRFKPPFPGVAGLWGVPTVVN 199 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE+ A +P IL GA W++ G GTK+ +++G VN P E + ++I K Sbjct: 200 NVETFACLPYILTNGADWFASIGAPKYPGTKVLTLTGDVNNPTYFEVPTNYILSDVIYKL 259 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 GGI+ G AV GG+S +P + +I D+D + +G+ LG+ AV+VMD + DI Sbjct: 260 GGGIKNG-RKFKAVQVGGTSGAFIPEQNLNTSI-DFDSMSAIGAALGSGAVLVMDETRDI 317 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 + + R+S F++HESCG+C PCREGT +ME++ G A + +ID L +++ ++ Sbjct: 318 VDIVTRISKFFEHESCGKCNPCREGTFRCREIMEKINSGRATEADIDNLLLLARVMKRAA 377 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +C LG AA PI I++F ++ QY Sbjct: 378 LCGLGQAAPVPITSTIEHFGHEYRRKLLQY 407 >gi|238897509|ref|YP_002923188.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465266|gb|ACQ67040.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 472 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 159/376 (42%), Positives = 231/376 (61%), Gaps = 11/376 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++ VK +GL+GRGGAGFSTG+KWS MPK + R YL+ NADE EPGT KDR +M P Sbjct: 61 IVHSVKEAGLKGRGGAGFSTGLKWSLMPKDPNMRIRYLLCNADEMEPGTYKDRLLMEQLP 120 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++FA+ A+ +I++RGE+I L+ A+ E GLLG N G+D ++ Sbjct: 121 HLLVEGMLISAFALQAYRGYIFLRGEYIEAAVHLRRAIVEATQVGLLGKNIMGSGFDFEL 180 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 +VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ VP I+ Sbjct: 181 MVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIM 240 Query: 222 RRGASWYSG-------FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 G +WY G F + + GTKL SG V P E I+ E++E + GG++ Sbjct: 241 EHGVAWYQGIAPDASRFAKSKDTGTKLMGFSGRVKNPGVWELPFGISAREILEDYAGGMK 300 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G A PGG+ L + MD++ + + GS LGTA + +D +++ Sbjct: 301 NGL-KFKAWQPGGAGTDFLTEEHL-DLPMDFEHIGKAGSRLGTALAMAVDHEINMVSLTC 358 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393 L F+ ESCG CTPCR+G W +++++ L +G ++ +I+ L ++ + + G+T CA Sbjct: 359 NLEEFFARESCGWCTPCRDGLPWSVKILKALERGEGREGDIETLEQLCRFLGPGKTFCAH 418 Query: 394 GDAAAWPIQGLIKNFR 409 A P+Q +K FR Sbjct: 419 APGAVEPLQSALKYFR 434 >gi|78221382|ref|YP_383129.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78192637|gb|ABB30404.1| NADH dehydrogenase subunit F [Geobacter metallireducens GS-15] Length = 422 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 167/377 (44%), Positives = 228/377 (60%), Gaps = 7/377 (1%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGAGF TG KWSF+P+ P YL+ N DE EPGT KDR ++ P++L+EG Sbjct: 48 SGLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRVLLEANPYSLVEGM 106 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168 +A++AIG AFI++R + E+ + A+ E A+GLLG N G+ +++ VH AG Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKAAGLLGENILGTGFSLELDVHQSAG 166 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 YICGEETAL+ +LEGK+ PR KPPFPA GL+G PT VNNVE++A +P I+ GA+W+ Sbjct: 167 RYICGEETALMNALEGKRANPRSKPPFPAVKGLWGRPTVVNNVETLANIPAIVANGAAWF 226 Query: 229 SGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 G R G KLF +SGHVN E + +T E+I+ CGG+ G + A IPGG Sbjct: 227 KGLARIPEAAGMKLFCVSGHVNNTACFELPLGMTLGEIIDGPCGGMLPGRE-FKACIPGG 285 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 +S P MD+D + + GS LGT ++V DR T ++ A L VFY ESCG Sbjct: 286 ASTPFFTKEHWH-VPMDFDTVAKAGSRLGTGGIVVFDRDTCMVAATLNLIVFYARESCGW 344 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCREG ++ V+ R+ G ++ I +L E + + + C L A P++GL++ Sbjct: 345 CTPCREGLPFVQDVLARIEAGEGREEHIGILREHIQYLN-YSFCPLAPGAMGPVEGLLRL 403 Query: 408 FRPLIEERIDQYHRCNF 424 F I E I RC F Sbjct: 404 FEGEIREHI-VLGRCPF 419 >gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] Length = 659 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 166/419 (39%), Positives = 247/419 (58%), Gaps = 11/419 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N + + L + ++R + K L R +I EVK SGLRGRGGAGF TG KW Sbjct: 182 VLANCGHINPEDLGEYLARQGYRGFLKALAMERAAVIAEVKRSGLRGRGGAGFLTGQKWE 241 Query: 68 FMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 F +D P Y+V NADE +PG DR ++ +PH ++EG ++A +AIGA +IY Sbjct: 242 FT----ADAPGEEKYIVCNADEGDPGAFMDRSVLEGDPHAVLEGMLVAGYAIGAREGYIY 297 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 VR E+ L+ A+ + A GLLG N G+ + V GAGA++CGEETALL S+E Sbjct: 298 VRAEYPLAIRRLRTAIAQAEACGLLGENILASGFSFRVYVKAGAGAFVCGEETALLTSIE 357 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G +G PR++PP+PA GL+ PT +NNVE++A +P ILRRGA WY+ G ++G+K+F+ Sbjct: 358 GNRGMPRVRPPYPAVKGLWSKPTNINNVETLANIPHILRRGADWYAAMGVGRSKGSKVFA 417 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ++G VN VE M ++ E+I GGI+GG AV GG S CLP + + Sbjct: 418 LTGKVNNTGLVEVPMGLSLREIIFAIGGGIQGG-KAFKAVQIGGPSGGCLPESLLDTPV- 475 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ L E G+ +G+ ++VMD ST ++ F + ESCG+C PCREGT M+ ++ Sbjct: 476 DYESLLEAGAMVGSGGLVVMDESTCMVDIARYFLNFTQQESCGKCAPCREGTKRMLEIVT 535 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ +G + +++ L +++ I+ ++C LG +A P+ ++ FR E I RC Sbjct: 536 RITEGEGRLEDLEALEKLAAVIKDTSLCGLGQSAPNPVLTTLRYFRDEYEAHIHD-QRC 593 >gi|89073313|ref|ZP_01159843.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34] gi|89051023|gb|EAR56487.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34] Length = 427 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 169/414 (40%), Positives = 256/414 (61%), Gaps = 5/414 (1%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N + + + ++ G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+ Sbjct: 8 NFHHSKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFLA 67 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K S P YLVVN DESEPG+ KDR ++ +PHT++EG + +S+ +GA AF+++RGE+ Sbjct: 68 KDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEYR 126 Query: 131 RERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + L+ AV E A+GL+G N G+D+D+ VH AG YICGEETALL +LEG +G P Sbjct: 127 EGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGNP 186 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R KPPFP GL+G PT VNNVESI +P I+ +GA W+ G+ + G+ ++ +SG V Sbjct: 187 RSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPVK 246 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + T ELI +H GG+ + L+ +PGG+S + + +D+DG Sbjct: 247 KPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHLD-IPLDWDGPA 304 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +GS LGT +IVMD + I + L+ F+ ESCG CTPCR+G +++ V+++ G Sbjct: 305 TVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETGE 364 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 A +++DLL+E+ + I T CAL A PI +K+F+ + + I+ RC Sbjct: 365 ATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFDSHIEG-QRCT 417 >gi|322417695|ref|YP_004196918.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320124082|gb|ADW11642.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 420 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 165/370 (44%), Positives = 226/370 (61%), Gaps = 8/370 (2%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGAGF TG KWSF+P+ P +L+ N DE EPGT KDR ++ H P++LIEG Sbjct: 48 SGLRGRGGAGFPTGKKWSFVPRDLPG-PRWLICNCDEMEPGTYKDRVLLEHNPYSLIEGM 106 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167 +AS+A+G AFI++R + + E+L + E SGLLG LG + +D+ +H A Sbjct: 107 TLASYALGVRHAFIFIRKGYEKAAENLARGIAEAKKSGLLGERI-LGTEHSIDLDLHLSA 165 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 G YICGEETAL+ +LEGK+ PR KPPFPA GL+ PT VNNVE++A +P+I+ GA+W Sbjct: 166 GRYICGEETALINALEGKRPNPRQKPPFPAVKGLWQGPTVVNNVETLANIPSIIANGAAW 225 Query: 228 YSGFG-RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 + G GTKLF +SG V VE + T E+IE CGG+R G A IPG Sbjct: 226 FKGLALTPEGAGTKLFCVSGSVQNRVCVELPIGTTLGEIIEGSCGGMRDG-KKFKACIPG 284 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 G+S L QM+ MDYD + + GS LG+ +IV D +++A L F+ ESCG Sbjct: 285 GASTQFLTPDQMK-VPMDYDSVAKAGSRLGSGGIIVFDEGHCLVEATLNLITFFARESCG 343 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 CTPCREG ++ ++ R+ G ++ +I +L E K + T CAL A P+ GL++ Sbjct: 344 WCTPCREGLPYVQEILTRIENGRGEEEDIGILREHVKYLN-YTFCALAPGAMAPLDGLLR 402 Query: 407 NFRPLIEERI 416 +F + E I Sbjct: 403 DFEDEVREHI 412 >gi|195091512|ref|XP_001997541.1| GH25296 [Drosophila grimshawi] gi|193906148|gb|EDW05015.1| GH25296 [Drosophila grimshawi] Length = 833 Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 166/335 (49%), Positives = 214/335 (63%), Gaps = 3/335 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W +L+ G +WI++EVK SGLRGRGG+G+ Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW F+ KV ++ L++N E EPGTCKDR+I+RHEPH +IEGC++A +A+G Sbjct: 186 TGNKWEFLQKVNANN-KILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG N+ G DI V G Y+ GEETAL+ Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PP+ G + P V N E++AVVPTILRRGA W++G GR N GTK Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSI GHV +PCTVEE MS+ E+I+ H GG+ GGW+NLL V PGG S P + G Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 +MDYD L++ GS GT +IV+ + D + + R Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQR 458 >gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 608 Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 158/414 (38%), Positives = 249/414 (60%), Gaps = 5/414 (1%) Query: 5 QDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q+R + N + +++ + G + + K + + +I EVK+SGLRGRGGAGF T Sbjct: 109 QERFLLHNCGNIDPENIESYLDAGGYKGLAKAVAMKPEEVIAEVKSSGLRGRGGAGFPTH 168 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW+F ++ Y++ NADE +PG DR I+ +PH+++EG +IA +AIGA +I Sbjct: 169 QKWTFARDAKGEQ-KYIICNADEGDPGAFMDRSILESDPHSVLEGMMIAGYAIGASVGYI 227 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ L+ A+ + LG+N G+D DI + GAGA++CGEETAL+ S+ Sbjct: 228 YIRAEYPLAIRRLKIAIAQAKEHYYLGTNILNSGFDFDIKIREGAGAFVCGEETALIASI 287 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR +PPFPA GL+ PT++NNVE+ A VP IL +GA+ Y+ G E ++GTK+F Sbjct: 288 EGKRGMPRFRPPFPAVSGLFASPTSINNVETFANVPQILAQGAAAYNVHGTEFSKGTKVF 347 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G VN +E M ++ ++++ GGI G AV GG S C+PA ++ Sbjct: 348 ALAGKVNRGGLIEVPMGMSINDIVFAVGGGISTG-KAFKAVQTGGPSGGCIPA-ELADTA 405 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DY+ LKE+G+ +G+ +++MD T ++ F + ESCG+CT CR GT M+R++ Sbjct: 406 VDYESLKEIGAIMGSGGLLIMDEETCMVDVAKFFLTFTREESCGKCTFCRVGTEQMLRIL 465 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ER+ +G + +ID L ++ I+ ++C LG P+ IK FR E + Sbjct: 466 ERITEGEGTEEDIDTLEDLGSKIKAGSLCGLGQTVPNPVLTTIKYFRDEYEAHV 519 >gi|302337010|ref|YP_003802216.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Spirochaeta smaragdinae DSM 11293] gi|301634195|gb|ADK79622.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Spirochaeta smaragdinae DSM 11293] Length = 1040 Score = 301 bits (772), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 164/405 (40%), Positives = 246/405 (60%), Gaps = 7/405 (1%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D+++ G + + K+L E+ D +I+ +K SGLRGRGGAGF T +KW F K + Sbjct: 153 SIEDAIACGAYTALAKVLNEEDADKVIDTLKISGLRGRGGAGFPTWLKWDFTRKSPGEE- 211 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG DR ++ +PH LIEG IA IGA +YVR E+ + L Sbjct: 212 KYVLCNADEGDPGAFMDRSVLEGDPHALIEGMAIAGKTIGADHGVVYVRAEYPLAVKRLG 271 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++ SGLLG N LG ++ DI + G+GA++CGEETAL+ S+EGK+G+PR +PPF Sbjct: 272 HAIEAAKESGLLGENI-LGSEFNFDIEIRMGSGAFVCGEETALIASIEGKRGEPRPRPPF 330 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN GL+G P+ +NNVE+ A + I+++GA WY+ FG ++GTK+F+++G ++ VE Sbjct: 331 PANKGLWGKPSLLNNVETYANIAGIIKKGAEWYASFGTTESKGTKVFALAGAISTSGLVE 390 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + E++ GGI GG + A I GG S C+P + +DY L+E+G+ + Sbjct: 391 VPIGTCLGEVVFDIGGGIPGGKEFKAAQI-GGPSGGCIPR-EYLNVPLDYASLQELGAIM 448 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD T ++ F + ESCG+CTPCR GT M+ ++ER+ G + +I Sbjct: 449 GSGGLIVMDDDTCMVDVARYFLEFVQEESCGKCTPCRVGTKRMLEILERICNGKGEMEDI 508 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 D L E+ I+ +C LG A P+ I++FR EE I +H Sbjct: 509 DRLIELGTKIKETALCGLGQTAPNPVLSTIRHFRHEYEEHIRDHH 553 >gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] Length = 597 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 163/418 (38%), Positives = 249/418 (59%), Gaps = 5/418 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI N + L D ++ ++ + K L + I+ EVK SGLRGRGGAG Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMDPEAIVEEVKESGLRGRGGAG 171 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 FSTG+KWS SD+ Y++ NADE +PG DR ++ +PH +IEG +I ++AIGA Sbjct: 172 FSTGLKWSLCRATPSDK-KYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ ++LQ A+ + +G LG+N G++ + ++ GAGA++CGEETAL Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR++PPFPA GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G VN VE M + ++I GG AV GG S CLP M Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDI-GGGIKDGGKFKAVQIGGPSGGCLPE-DM 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L + G+ +G+ +++MD +T ++ F + ESCG+CTPCREG M Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++R+ +G ++ +I+ L ++ ++ ++C LG A PI +K FR EE I Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI 526 >gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] Length = 610 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 162/411 (39%), Positives = 247/411 (60%), Gaps = 5/411 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q +I T NL + + + ++R + + K L+ + +I E+K SGLRGRGGAG Sbjct: 114 FFKKQVKIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 173 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW K +++ ++V NADE +PG DR ++ +PH +IEG IA++AIGA Sbjct: 174 FPTGLKWELAAKQKAEK-KFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 232 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+YVR E+ E L A+++ G LG N + DI + GAGA++CGEETAL Sbjct: 233 KGFVYVRAEYPLAIERLSIALEQAREYGFLGENIMGTDFSFDIEIRIGAGAFVCGEETAL 292 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++GQPR+KPP+P GL+G PT +NNVE++A VP I+R GA + +G E + G Sbjct: 293 MASIEGERGQPRVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTETSPG 352 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V VE M IT ELI + GGI G L AV GG S C+PA + Sbjct: 353 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIVGD-KKLKAVQTGGPSGGCIPAEYI 411 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + D++ L+++G+ +G+ +IVMD ++ F ESCG+CTPCREGT M Sbjct: 412 DTPV-DFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 470 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++E++ G + +I+ L +++ I+ ++C LG A P+ ++ FR Sbjct: 471 LEILEKITSGEGTEEDIEELEKLANVIKDTSLCGLGQTAPNPVLSTLRYFR 521 >gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 607 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 160/411 (38%), Positives = 248/411 (60%), Gaps = 5/411 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI T NL + + + ++R + + K L+ + +I E+K SGLRGRGGAG Sbjct: 111 FFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 170 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +++ ++V NADE +PG DR ++ +PH +IEG IA++AIGA Sbjct: 171 FPTGLKWELAARQKAEK-KFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 229 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+YVR E+ E L A+++ G LG N + DI + GAGA++CGEETAL Sbjct: 230 KGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETAL 289 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++GQP++KPP+P GL+G PT +NNVE++A VP I+R GA + +G EN+ G Sbjct: 290 MASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPG 349 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V VE M IT ELI + GGI G L A+ GG S C+PA + Sbjct: 350 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGI-AGDKKLKAIQTGGPSGGCIPAEYV 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + D++ L+++G+ +G+ +IVMD ++ F ESCG+CTPCREGT M Sbjct: 409 DTPV-DFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 467 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++E++ G + +I+ L +++ ++ ++C LG A P+ ++ FR Sbjct: 468 LEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFR 518 >gi|146331726|gb|ABQ22369.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1 precursor-like protein [Callithrix jacchus] Length = 215 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 139/204 (68%), Positives = 163/204 (79%) Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 V PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+ G Sbjct: 1 VSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTG 60 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 GWDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVMDRSTDI+KAI R Sbjct: 61 GWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIAR 120 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 L FYKHESCGQCTPCREG WM +VM R V+G AQ EID L+E+SK IEG TICALGD Sbjct: 121 LIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICALGD 180 Query: 396 AAAWPIQGLIKNFRPLIEERIDQY 419 AAWP+QGLI++FRP +EER+ ++ Sbjct: 181 GAAWPVQGLIRHFRPELEERMQRF 204 >gi|27904650|ref|NP_777776.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372475|sp|Q89AU2|NUOF_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|27904047|gb|AAO26881.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 444 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 155/373 (41%), Positives = 228/373 (61%), Gaps = 10/373 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100 +I+ +K SGL+GRGGAGF TG+KWS MP + + + YL+ NADE EPGT KDR +M Sbjct: 51 VIDLIKQSGLKGRGGAGFLTGLKWSLMPPLNDEYGYTRYLLCNADEMEPGTYKDRFLMEK 110 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157 PH L+EG +I++FA+ ++I++RGE++ L+ ++ E G LG N S L + Sbjct: 111 VPHQLLEGILISAFALSVTKSYIFLRGEYVNTERILKQSIIEATNYGYLGKNVCGSNLTF 170 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 + I +H GAG YICGEETAL+ SLEG++ PR KPPFPA VGL+G PT VNNVE+++ V Sbjct: 171 E--IFIHTGAGRYICGEETALINSLEGRRANPRFKPPFPAYVGLWGKPTCVNNVETLSNV 228 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 P I G WY G + + GTK+ SG V +P E IT E+ E++ GG++ Sbjct: 229 PAIFLNGVKWYKGLSKSLDTGTKMMGFSGSVKFPGIWELPFGITAREIFERYAGGMKNN- 287 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L PGG+S L + MD+ +K++GS LGTA + +D S I+ + + Sbjct: 288 KKLKVWQPGGASTSFLIDKHL-DVPMDFVNIKKVGSRLGTALAMAVDDSVSIVSLVRNIE 346 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W++++++ L + I +I++L ++ + + GRT CA Sbjct: 347 EFFSRESCGFCTPCRDGLPWIVKILKVLEQKIGVPEDIEILEQLCEQLGPGRTFCAHAPG 406 Query: 397 AAWPIQGLIKNFR 409 A P++ +K FR Sbjct: 407 AIEPLKSALKYFR 419 >gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 638 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 161/393 (40%), Positives = 228/393 (58%), Gaps = 7/393 (1%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + +G + + K L E D +I VK SGLRGRGGAGF G+KWSF+PK D Sbjct: 224 SVDSYLEKGGYAAIKKALAEYQPDDVIAIVKDSGLRGRGGAGFPAGVKWSFLPK--GDMQ 281 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE EPGT KDR +M PH L+EG ++ +A GA +IY+RGE+ R E LQ Sbjct: 282 KYVICNADEGEPGTYKDRILMEENPHGLLEGMMLCGYATGATVGYIYIRGEYRRSIERLQ 341 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+D+ G+LG N + DI + G GAY+CGEE++L+ S+EGK+G PR +PPFP Sbjct: 342 RAIDQAREKGILGDNIFGSSFRFDIFIKEGGGAYVCGEESSLMNSMEGKRGYPRFRPPFP 401 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A G P+ VNNVE+ A VP I+ +GA+WY G E GTKL+ +SG +N VE Sbjct: 402 AGAGFLAKPSNVNNVETYASVPMIIEKGAAWYKSVGLETCTGTKLYCLSGKLNRTGLVEM 461 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T E+IE GI+ G A + G S + ++ +D D + G LG Sbjct: 462 PMGTTLREIIETFGKGIKNGKTFKFAQV--GGSAGGILGPELMDLPLDIDSTIKAGVTLG 519 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + V+V D T + + + F++HESCGQC PCR GT + + + G A ++D Sbjct: 520 SGVVLVCDEDTCPVDFLLDVLNFFEHESCGQCVPCRVGTRQLHHLARKFATGTAVPGDLD 579 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L+ E +K ++ ++CALG + PI ++K FR Sbjct: 580 LMVEKAKLMK-NSLCALGQSPILPITTMLKYFR 611 >gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 613 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 164/419 (39%), Positives = 249/419 (59%), Gaps = 6/419 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDS-MSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 + Q RI G+ DS +S G + ++K L+ + +I E+ SGLRGRGGA Sbjct: 116 FIDKQQRIILKHCGVVNPEDIDSYLSVGGYKAIEKALKSMTPEQVIEEISRSGLRGRGGA 175 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWSF K R Y++ NADE +PG DR ++ PH+++EG +IA +A+GA Sbjct: 176 GFPTGTKWSFARK-SPGREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY+R E+ + L+ A+ + G LGS+ + +I++ GAGA++CGEETA Sbjct: 235 ENGYIYIRAEYPLAIKRLKIAIAQALEKGYLGSHILDSNFSFNIMIREGAGAFVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G R++PPFPA G++G PT++NNVE+ A VP I+ G +S FG EN++ Sbjct: 295 LIASVEGKRGMTRIRPPFPAQSGVWGKPTSINNVETFANVPWIILNGGDSFSRFGTENSK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M IT +E++ GG+ G L AV GG S C+PA Sbjct: 355 GTKVFALAGSIARGGLVEVPMGITINEIVYDVGGGLSSG-RKLKAVQTGGPSGGCIPA-S 412 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK++G+ +G+ +++MD ST ++ F K ESCG+CT CR GT Sbjct: 413 LADTQVDYDSLKKIGAIMGSGGMLIMDDSTCMVDVAKFFLKFTKSESCGKCTFCRVGTKQ 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++++ER+ G + +I+LL E+ + I +C LG P+ IK FR E I Sbjct: 473 LLKILERITNGEGRDGDIELLEELGQKISAGALCGLGQTVPNPVLTTIKYFRHEYEAHI 531 >gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] Length = 597 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 157/375 (41%), Positives = 228/375 (60%), Gaps = 4/375 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ +K SGLRGRGGAGF TG+KW F D+ Y++ NADE +PG DR ++ +P Sbjct: 155 VIDTIKKSGLRGRGGAGFPTGLKWQFTHDAIGDK-KYVLCNADEGDPGAFMDRSVLEGDP 213 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+E IA +A+GA +IYVR E+ + L A+++ GLLGSN G+ DI Sbjct: 214 HALLEAMTIAGYAVGADQGYIYVRAEYPLAVKRLNIAINQAREYGLLGSNIFGTGFKFDI 273 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EGK+G+PR +PPFPAN G++G PT +NNVE+ A VP I+ Sbjct: 274 DLRLGAGAFVCGEETALMTSIEGKRGEPRPRPPFPANKGVFGKPTLLNNVETYANVPQII 333 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G W++ G + ++GTK+F++ G +N VE M T E+I GGI G Sbjct: 334 LNGPEWFASIGTDKSKGTKVFALGGKINNTGLVEIPMGTTLREVIYDIGGGIPQG-KAFK 392 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA Q ++YD L ++GS +G+ +IVMD ++ F Sbjct: 393 AAQTGGPSGGCIPA-QFLDMPIEYDSLIQIGSMMGSGGMIVMDEDNCMVDIARFFLQFTV 451 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ +++R+V+G ++ +I+LL ++KNI+ +C LG A P+ Sbjct: 452 DESCGKCPPCRIGTKRMLEILDRIVEGKGKEGDIELLETLAKNIKASALCGLGQTAPNPV 511 Query: 402 QGLIKNFRPLIEERI 416 +K FR E I Sbjct: 512 LSTLKYFRDEYEAHI 526 >gi|254481135|ref|ZP_05094381.1| NADH oxidoreductase (quinone), F subunit [marine gamma proteobacterium HTCC2148] gi|41582334|gb|AAS07948.1| NADH-quinone oxidoreductase, F subunit [uncultured marine bacterium 463] gi|214038930|gb|EEB79591.1| NADH oxidoreductase (quinone), F subunit [marine gamma proteobacterium HTCC2148] Length = 431 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 163/397 (41%), Positives = 230/397 (57%), Gaps = 7/397 (1%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--KVCSDRPHYLVV 82 + G + + L + + + +K S LRGRGGAGF TGMKWSF+P CS YL+ Sbjct: 25 ANGGYQGLRAALAQSPEDCLQVLKDSNLRGRGGAGFPTGMKWSFVPMGDKCSPGHKYLIC 84 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 NADE EPGT KDR ++ +PH LIEG +++++ + A A+I++R E+ + LQ A+ Sbjct: 85 NADEMEPGTFKDRLLLECDPHQLIEGMIVSAYTLQADVAYIFIRAEYHQATRLLQEAIAA 144 Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 C+ G LG + GY +++ VH AG YICGEETAL+ SLEGK+ PR KPPFP GL Sbjct: 145 CHEKGYLGQDILGTGYQLEMHVHSSAGRYICGEETALISSLEGKRANPRAKPPFPQVSGL 204 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 +G PT VNNVE++ V I+ RGA W+ G + GTKL+ +SG V P E M Sbjct: 205 WGRPTIVNNVETLCNVHHIIERGAEWFKSLGLTEDAGTKLYGVSGRVKNPGCWELPMGTP 264 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ++IE++ GG+ G+ NL +PGG S L + A MDYD + + GS +GT +I Sbjct: 265 VRQIIEEYAGGMEDGY-NLKGFLPGGGSTDFLTEEHLDLA-MDYDTIGKAGSRMGTGTMI 322 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 ++D T + + L F+ ESCG CTPCR+G W +V++ + G Q+ ++D L Sbjct: 323 ILDDKTCPVGFVKNLVAFFARESCGFCTPCRDGLPWSAQVLDDIQNGRGQEEDMDTLARQ 382 Query: 382 SKNIE--GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 K I G T CAL A P+Q +K F E + Sbjct: 383 VKFIGAIGNTHCALAPGAMEPLQSAMKYFPEAFENHL 419 >gi|226327878|ref|ZP_03803396.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198] gi|225203582|gb|EEG85936.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198] Length = 404 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 164/385 (42%), Positives = 224/385 (58%), Gaps = 6/385 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 + EVK +GL+GRGGAGFSTG+KWS MPK S Y++ NADE EPGT KDR +M P Sbjct: 6 VTTEVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYILCNADEMEPGTYKDRLLMEELP 65 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +I + A+ A+ +I++RGE+I + L+ A++E A+G LG N G D ++ Sbjct: 66 HLLIEGMIIGAHALKAYRGYIFLRGEYIEAAKHLRHAIEEAKAAGFLGKNIFGSGIDFEL 125 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP I+ Sbjct: 126 FVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAII 185 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY G G+ + GTKL SG V +P E T E++E + GG+R G Sbjct: 186 EHGKDWYIGLSEGKSPDAGTKLMGFSGRVKFPGLWELPFGTTAREILEDYAGGMRDGL-K 244 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A PGG+ L + MD+ + + GS LGTA + +D +++ L F Sbjct: 245 LKAWQPGGAGTDFLTEDHLD-LPMDFGTIAKAGSRLGTALAMAVDNEINMVSLTRNLEEF 303 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W + ++ + G + +I+ L + +++ G T CA A Sbjct: 304 FARESCGWCTPCRDGLPWSVEILRAIENGKGRPGDIETLEHLCRSLSPGHTFCAHAPGAV 363 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCN 423 P+Q IK FR E I Q N Sbjct: 364 EPLQSAIKYFREEFEAGIIQEDYTN 388 >gi|297616330|ref|YP_003701489.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297144167|gb|ADI00924.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 407 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 162/409 (39%), Positives = 247/409 (60%), Gaps = 11/409 (2%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ R+ YG + ++ D ++ G + +++K + +I EVK SGLRGRGGAGF Sbjct: 1 MAEELRVVLRNYGKINPLNIDDYINAGGYKSLEKARSMSQMDVIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + G KW F + +D+ Y++ NADE EPGT KDR IM +PH+++EG I +AIGA+ Sbjct: 61 NAGQKWMFAYQAQADQ-KYVICNADEGEPGTYKDRIIMESDPHSVLEGMAICGYAIGANK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGE+ + L A+ + A G+LG + DI V GAGAY+CGEETAL+E Sbjct: 120 GYIYCRGEYPYVVDILNTAIAQAKAKGVLG-------EFDIEVRMGAGAYVCGEETALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G+PR KPPFP GL+G P+ VNNVE+ A + IL +GA WY+ G + GTK Sbjct: 173 SIEGSRGEPRYKPPFPPVSGLWGKPSIVNNVETFANIAIILEKGADWYASLGAPSYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G V +E + T E++ G G AV GG+S +P + Sbjct: 233 VLTLTGDVVNKKFIEVPTNTTIREVVYGFG-GGIPGGKKFKAVQIGGTSGGFIPESLLDT 291 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I D+D + +G+ LG+ AV+VMD + DI+ + R++ F++HESCG+C PCREGT M + Sbjct: 292 PI-DFDSMAAIGATLGSGAVLVMDETRDIVDVVERIAKFFEHESCGKCAPCREGTMRMYK 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +M ++ KG +++ L+ + + + +C LG AA P+ IK+FR Sbjct: 351 LMSKVNKGQGTAKDVALMERLGRVMSVACLCGLGQAAPTPVLTTIKHFR 399 >gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] Length = 599 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 245/411 (59%), Gaps = 6/411 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 T Q +I T NL + S+ + ++R G++ I E + +I+EVK S LRGRGGA Sbjct: 111 FFTKQVKIATRNLGVIDPLSIDEYIARDGYFALHKAIKEMTPEEVISEVKKSELRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F+ K D Y++ NADE +PG DR I+ +PH+++E IA++A+GA Sbjct: 171 GFPTGLKWEFVRKAKGDI-KYVICNADEGDPGAFMDRAILEGDPHSVVEAMTIAAYAVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ E A++ G LG N G+ DI + GAGA++CGEETA Sbjct: 230 QKGFIYVRAEYPLAIERFSKALETAREYGFLGKNILGTGFSFDIEIRIGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR+KPP+PA GL+G PT +NNVE+ A + I+ G W++ +G E +R Sbjct: 290 LINSIEGKRGVPRVKPPYPATYGLWGKPTLINNVETYANIAPIILHGGDWFAQYGVEGSR 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M IT ELI + GG+ G L AV GG S C+P Sbjct: 350 GTKVFALAGKIKNTGLVEVPMGITLRELIYEIGGGVPDG-KKLKAVQTGGPSGGCIPEEH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I YD LK++G+ +G+ +IVMD ++ F ESCGQCTPCR+GT Sbjct: 409 LDTPIT-YDNLKKLGTIIGSGGMIVMDEDDCMVDVAKFFLEFTVEESCGQCTPCRDGTKK 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 M+ ++E++ G + ++++L E+ ++I ++C LG A P+ ++ F Sbjct: 468 MLEILEKITAGEGTEEDLEVLKELGEHIMKTSLCGLGQTAPQPVVSTMRYF 518 >gi|21672441|ref|NP_660508.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008857|sp|Q8K9Y3|NUOF_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|21623053|gb|AAM67719.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 447 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 158/386 (40%), Positives = 232/386 (60%), Gaps = 7/386 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ +K SGL+GRGGAGFSTG+KWS M K S + YL+ NADE EPGT KDR +M + P Sbjct: 50 VVHLIKESGLKGRGGAGFSTGLKWSLMSKDNSSKIRYLLCNADEMEPGTYKDRFLMENIP 109 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG ++++FA+ +I++RGE+I+ L+ ++ E G +GSN G++ ++ Sbjct: 110 HQLIEGMLLSAFALNVSRGYIFLRGEYIKAEYILKKSIQEAINFGFIGSNILNSGFNFEL 169 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 +H GAG YICGEETAL+ SLEG++ PR KPPFPA GL+G PT VNNVE+++ VP+I+ Sbjct: 170 FLHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVFGLWGKPTCVNNVETLSNVPSIV 229 Query: 222 RRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 G +WY + + GTKL SG VN P E T E++E + G++ G L Sbjct: 230 LHGVNWYKKLSKSTDTTGTKLMGFSGKVNNPGVWELPFGTTAREILEDYARGMKSGLF-L 288 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 + PGG+ L + MD+ + + GS LGTA + +D T++I + + F+ Sbjct: 289 KSWQPGGAGTDFLIEKHL-DLPMDFTSIAKAGSRLGTAIAMAVDNKTNMISLVCNIEKFF 347 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAW 399 ESCG CTPCREG W+++++E L K K ++ L + ++ G+T CA A Sbjct: 348 SRESCGLCTPCREGLPWIVKILESLEKKEGHKNDVKNLERLCLDLSPGKTFCAHAPGAVE 407 Query: 400 PIQGLIKNFRPLIEE--RIDQYHRCN 423 P+Q IK FR E I + +C+ Sbjct: 408 PLQSAIKYFRLEFEAGISIKKLKKCS 433 >gi|148653492|ref|YP_001280585.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp. PRwf-1] gi|148572576|gb|ABQ94635.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter sp. PRwf-1] Length = 537 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 162/395 (41%), Positives = 237/395 (60%), Gaps = 11/395 (2%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + LEK + + +KA+ +RGRGGAGF+ G+KW+FM P YL+ NADE E Sbjct: 79 FEGLKTALEKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFMTP-PDGGPRYLICNADEME 137 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR +M P LIEG +I + AIGA +I++RGE+I E L AA+DEC A+ L Sbjct: 138 PGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYILAAERLMAAIDECLANNL 197 Query: 149 LGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 +G N LG + ++ VH GAG YICGEETAL+ LEG++ PR KPPFP G +G PT Sbjct: 198 MGDNI-LGSEFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQVSGAWGRPT 256 Query: 207 TVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITF 262 VNNVE+++ +P I+ G WY G GTK+F SG VN P E T Sbjct: 257 VVNNVETLSNMPAIMINGVEWYQSLPNEKGNSTTPGTKIFGCSGLVNDPGLWELPFGYTA 316 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 E+IE GG++ G L A +PGG+S L + A MD+D +++ GS +GT ++V Sbjct: 317 REIIEDFAGGMKDG-KRLKAWLPGGASTDFLTTEHLDVA-MDFDSIQKAGSRMGTGLIMV 374 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 +D S D++ + L +F++ ESCG CTPCR+G W ++++ + G Q+ +++ L ++ Sbjct: 375 VDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGQQGDVEKLEGLT 434 Query: 383 KNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ G+T CA A P+ +K FR + +I Sbjct: 435 RDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469 >gi|294140411|ref|YP_003556389.1| NADH dehydrogenase I subunit F [Shewanella violacea DSS12] gi|293326880|dbj|BAJ01611.1| NADH dehydrogenase I, F subunit [Shewanella violacea DSS12] Length = 456 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 162/412 (39%), Positives = 240/412 (58%), Gaps = 12/412 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRP 77 LS+ +S G +D + + ++ D +++ +K S LRGRGGAGF TG+KWSF+P+ + + Sbjct: 20 QLSEYLSHGGYDGLTRAMKMSSDELLDTIKQSNLRGRGGAGFPTGLKWSFVPRGADAPKE 79 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+VNADE EPG KDR ++ PH +IEG +I +GA +I++RG++ E L Sbjct: 80 KYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEERLL 139 Query: 138 AAVDECYASGLLGSN------SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 A++EC LLG + ++ +I +H AG YICGEETAL+ ++EGK+ PR Sbjct: 140 QAIEECKQHQLLGRDILGRGIQGQAFNFEIHIHSSAGRYICGEETALINAMEGKRATPRA 199 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFP GL+G PT VNNVE+ +P I+ G+ W+ G+ + GTK+F +SG V P Sbjct: 200 KPPFPQVAGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRVKRP 259 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M + E+IE H GG+ G+ L +PGG S L + A MDYD + ++ Sbjct: 260 GLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DARMDYDEIGKL 317 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GT +I++D I + L F+ ESCG CTPCREG W + ++E++ +G + Sbjct: 318 GSRMGTGTIIILDDQYCPISMVLNLVRFFAQESCGWCTPCREGLPWAVSLLEKIERGEGE 377 Query: 372 KREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++I+ L + G T CAL A P+Q +K FR E I+ H+C Sbjct: 378 LKDIEQLENLCDFAAPGNTFCALAPGAVEPLQSALKFFRQDFEAHIN--HQC 427 >gi|293609135|ref|ZP_06691438.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|292829708|gb|EFF88070.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|325121085|gb|ADY80608.1| NADH dehydrogenase I chain F [Acinetobacter calcoaceticus PHEA-2] Length = 443 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ D+ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFDL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD D + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDADTIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K+FR E ++ Sbjct: 412 EPLMGALKHFRGEFEAKV 429 >gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 590 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 162/418 (38%), Positives = 250/418 (59%), Gaps = 6/418 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAG 59 + Q RI G+ + + +++SRG ++ K + E D +I+EV SGLRGRGGAG Sbjct: 105 MAKQVRIVLRNCGIIDPEKIDEAISRGAYEAFSKAVKEMSPDEVIDEVYRSGLRGRGGAG 164 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F + P Y++ NADE +PG DR ++ +PHT+IEG I ++A+GA Sbjct: 165 FPTGLKWKFT-RQAKGEPKYVICNADEGDPGAFMDRSVLEGDPHTVIEGMAICAYAVGAS 223 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + L A+D+ G LG N G++ DI + GAGA++CGEETAL Sbjct: 224 HGYIYCRAEYPLAIKRLNIALDQARERGFLGDNVFGSGFNFDIEIKEGAGAFVCGEETAL 283 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR +PPFPA G++G PT +NNVE+ A VP I+R GAS +S FG E ++G Sbjct: 284 IASIEGKRGMPRPRPPFPAESGVWGKPTNINNVETYANVPWIIRHGASEFSAFGTEKSKG 343 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V +E M + E+I GGI G + + AV GG S C+P+ + Sbjct: 344 TKVFALAGKVAKGGLIEIPMGMPIREVIYDIGGGIADGKE-IKAVQMGGPSGGCIPSWLL 402 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + DY+ + G+ +G+ +IV+D ++ ++ F + ESCG+C CR GT M Sbjct: 403 DTPV-DYESITATGAIMGSGGMIVLDETSCVVDVAKFFLNFTQRESCGKCPFCRIGTKRM 461 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++ER+ G + ++DLLYE++ ++ ++C LG A P+ +K FR E + Sbjct: 462 LEILERISNGEGKMEDLDLLYELALQVKEGSLCGLGQTAPNPVLTTLKYFREEYETHV 519 >gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] Length = 650 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 173/421 (41%), Positives = 256/421 (60%), Gaps = 7/421 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFST 62 Q+R+ GL + +S + + ++K+L+K + + +I EVK SGLRGRGGAGF T Sbjct: 168 QNRVILKKCGLIDPERVSQYFAHQGYRALEKVLQKMKPEEVIEEVKQSGLRGRGGAGFPT 227 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSF D+ YL+ NADE +PG DR ++ +PH +IEG +I ++AIGA + Sbjct: 228 GLKWSFCRAAEGDK-KYLICNADEGDPGAFMDRSVLEGDPHAVIEGMLIGAYAIGAAEGY 286 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IY R E+ E L+ A+ + GLLG N G+ + + GAGA++CGEETAL+ S Sbjct: 287 IYCRAEYPLAVERLKTAIGQAEKYGLLGKNILNSGFHFKLRIKEGAGAFVCGEETALIAS 346 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G PR++PP+PA GL+G PT +NNVE+ A VP I+ GA WYS FG E ++GTK+ Sbjct: 347 IEGQRGMPRVRPPYPAVKGLWGKPTNINNVETWANVPHIILNGAGWYSQFGTEKSKGTKI 406 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G VN VE M IT E+I GGI+GG A I GG S CLP M Sbjct: 407 FAMTGKVNNTGLVEVPMGITLREIIFDIGGGIKGGKKFKAAQI-GGPSGGCLPE-SMLDI 464 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D L +G+ +G+ + ++D +T ++ F ++ESCG+CTPCREGT M+ + Sbjct: 465 PVDFDSLGAVGAMVGSGGLTILDETTCMVDMARYFLNFTQNESCGKCTPCREGTKRMLEI 524 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ KG ++ +++ L ++ I ++C LG A P+ IK FRP E I + R Sbjct: 525 LVRITKGEGKEGDLENLERLAGVIRKTSLCGLGQTAPNPVSATIKYFRPEYEAHIKE-KR 583 Query: 422 C 422 C Sbjct: 584 C 584 >gi|91202657|emb|CAJ72296.1| similar to nuoF subunit of the NADH:ubiquinone oxidoreductase [Candidatus Kuenenia stuttgartiensis] Length = 552 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 160/403 (39%), Positives = 245/403 (60%), Gaps = 5/403 (1%) Query: 18 KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 K +S+ + R + ++K+L D +I EVKASGLRGRGGAGF TG KW D Sbjct: 149 KKISEYILRNGYAALEKVLSGMSPDKVIEEVKASGLRGRGGAGFPTGKKWESAKNAVGDE 208 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N DE +PG DR ++ +PH++IEG +I +AIG+ IYVR E+ E + Sbjct: 209 -KYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGSGKGIIYVREEYPIAVEHV 267 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + + GLLG N G+ DI V GAGA++CGEETAL+ S+EG++G PR +PPF Sbjct: 268 KIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETALIASIEGERGMPRPRPPF 327 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE++A +P I+ GA ++S G E+++GTK+F+++G VN VE Sbjct: 328 PAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSKGTKIFALAGSVNNTGLVE 387 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T EL+ + GGI A GG S C+P Q +DY+ +KE+G+ + Sbjct: 388 VPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPE-QYLDTPIDYESVKEVGAIM 445 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +I+MD +T +++ F ++ESCG+CTPCR GT M+ ++ R+ G ++ +I Sbjct: 446 GSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKRMLEILTRIANGEGEREDI 505 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LL E+++ ++C LG +A P+ ++ F+ EE I + Sbjct: 506 GLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIAK 548 >gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 299 bits (765), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 166/421 (39%), Positives = 248/421 (58%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q+R+ GL + + D + + K+ + +I+ +K SGLRGRGGAGFSTG Sbjct: 134 QERVALRNCGLVDPEDIDDYFLHDGYTALHKVTGMEQQAVIDIIKNSGLRGRGGAGFSTG 193 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F +D+ Y+V NADE +PG DR I+ +PH++IE I +AIGA + Sbjct: 194 MKWQFALNNKADQ-KYVVCNADEGDPGAFMDRSILEGDPHSIIEAMAICGYAIGATKGLV 252 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + L+ A++E SG+LG+N G++ DI + +GAGA++CGEETAL+ S+ Sbjct: 253 YIRAEYPLAIKRLKIALEEAKESGVLGTNIFNSGFEFDIEIKYGAGAFVCGEETALIHSM 312 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG +G+P KPPFPA G G PT VNNVE++A +P I+ +GA W+ FG E + GTK+F Sbjct: 313 EGHRGEPTTKPPFPAEHGYNGYPTNVNNVETLANIPVIINKGADWFKSFGTEKSSGTKVF 372 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G +N +E M T E+I + GGI+ G +V GG S CL + AI Sbjct: 373 ALAGKINNVGLIEVPMGTTLREVIYEIGGGIKDG-KKFKSVQTGGPSGGCLTEKHLDVAI 431 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRV 361 D+D L E GS +G+ +IVMD D + A+ + + F ESCG+CTPCR G ++ + Sbjct: 432 -DFDSLMEQGSMMGSGGMIVMDED-DCMVAVSKFYLEFTVEESCGKCTPCRIGNQRLLEI 489 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +E++ KG + ++ L E+S I+ ++C LG A PI + NF E + H+ Sbjct: 490 LEKITKGNGTEDDLRKLKELSNVIKDTSLCGLGQTAPNPILSTLNNFWDEYEAHVKD-HK 548 Query: 422 C 422 C Sbjct: 549 C 549 >gi|262280142|ref|ZP_06057927.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus RUH2202] gi|262260493|gb|EEY79226.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus RUH2202] Length = 443 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ D+ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFDL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD D + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDADTIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALEVGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K+FR E ++ Sbjct: 412 EPLMGALKHFRGEFEAKV 429 >gi|298507474|gb|ADI86197.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400] Length = 423 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 161/373 (43%), Positives = 224/373 (60%), Gaps = 6/373 (1%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 + LRGRGGAGF TG KWSF+P+ P YL+ N DE EPGT KDR ++ P++L+EG Sbjct: 48 ANLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRILLEANPYSLVEGM 106 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168 +A++AIG AFI++R + E+ + A+ E +GLLG N G+ +D+ VH AG Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKEAGLLGKNILGSGFSLDLDVHQSAG 166 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 YICGEETAL+ +LEG++ PR KPPFPA GL+G PT VNNVE++A +P I+ GA+W+ Sbjct: 167 RYICGEETALMNALEGRRANPRSKPPFPAVKGLWGRPTVVNNVETLANIPAIVANGATWF 226 Query: 229 SGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 G R GTKLF +SGHVN E + ++ E+I+ CGG+ G + A IPGG Sbjct: 227 KGLARISEAAGTKLFCVSGHVNNAACFELPLGMSLGEIIDGPCGGMLPGRE-FKACIPGG 285 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 +S P + MD+D + GS LGT ++V DR+T ++ A L FY ESCG Sbjct: 286 ASTPFF-TREHWNVPMDFDAVARAGSRLGTGGIVVFDRNTCMVAATLNLVSFYARESCGW 344 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCREG ++ V+ R+ G ++ I +L E + + C L A P++GL++ Sbjct: 345 CTPCREGLPFVKDVLARIEAGAGREEHIAILREHVQYLN-YAFCPLAPGAMGPVEGLLRL 403 Query: 408 FRPLIEERIDQYH 420 F I E I H Sbjct: 404 FEDEIREHIVMGH 416 >gi|148262412|ref|YP_001229118.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4] gi|146395912|gb|ABQ24545.1| NADH dehydrogenase subunit F [Geobacter uraniireducens Rf4] Length = 433 Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 170/410 (41%), Positives = 239/410 (58%), Gaps = 8/410 (1%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + ++ G +D + K L E + + V + LRGRGGAGF TG KWSF+P+ P Sbjct: 25 TFTEYCGEGGFDALKKALKELSPNDVQQLVIDANLRGRGGAGFPTGKKWSFVPRDLPG-P 83 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +L+ N DE EPGT KDR ++ P +L+EG ++A +AIG AFI++R + +++ Sbjct: 84 RWLICNCDEMEPGTYKDRVLLEANPWSLVEGIILACYAIGVSHAFIFIRRGYETAAGNVR 143 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E +GL+G N G+ DI +H AG YICGEETAL+ +LEGK+ PR KPPFP Sbjct: 144 RAIAEAKGAGLIGDNILGSGFSCDIDLHVSAGRYICGEETALMNALEGKRANPRSKPPFP 203 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255 A GL+G PT VNNVE++A +P I+ G +W+ G + GTKLF ISGHV +E Sbjct: 204 AVKGLWGGPTVVNNVETLANIPYIIANGPAWFKGLAKIPEAAGTKLFCISGHVQNTVCME 263 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + + ++I+ CGG+ G A IPGG+S P + RG MD+D + + GS L Sbjct: 264 LPLGMPLGDIIDGPCGGMLPG-KRFKACIPGGASTPFF-TEEHRGVPMDFDTVAKAGSRL 321 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +IV D T ++ A L FY ESCG CTPCREG +++ V+ RL G + +I Sbjct: 322 GTGGIIVFDEETCLVGATLNLVKFYARESCGWCTPCREGLPFVVDVLARLEAGKGETEDI 381 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 D+L E K + CAL A P++GL++ F I E I + RC F Sbjct: 382 DILREHVKYLN-LAFCALAPGAMGPVEGLLRLFEEEIREHIIK-RRCPFS 429 >gi|262376773|ref|ZP_06070001.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii SH145] gi|262308483|gb|EEY89618.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii SH145] Length = 443 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 226/378 (59%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ VKA+ ++GRGGAGF G+KWS M + P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEDLP 114 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQVRAKGYLGDNILGTGWNFEL 174 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G+ + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 235 LRGPEWYINLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-K 293 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S L A + MD + + + GS LGT ++V+D + ++ A L F Sbjct: 294 LKAWLPGGASTDFLAAEHID-LPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 412 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K FR E ++ Sbjct: 413 EPLMGALKYFRGEFEAKV 430 >gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 599 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 166/412 (40%), Positives = 246/412 (59%), Gaps = 8/412 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T+Q RI T NL + S+ + ++R + + K+L E G D +I ++ S L+GRGGA Sbjct: 111 FFTEQVRIATRNLGVIDPLSIDEYIARDGYFALHKVLFEIGIDDVIEILRKSELKGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T MKW F K D Y++ NADE +PG DR ++ +PH+++E IA+ +GA Sbjct: 171 GFPTWMKWDFTKKAEGDT-KYVICNADEGDPGAFMDRAVLEGDPHSIVEAMTIAARVVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176 F+YVR E+ E L A+ G LG N LG D D+ + GAGA++CGEET Sbjct: 230 QKGFVYVRAEYPLAIERLTHAMKMAREYGFLGENI-LGTDFSFDLEIRIGAGAFVCGEET 288 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G PR+KPPFPAN GL+ PT +NNVE+ A +P I+ G W+S FG E + Sbjct: 289 ALINSIEGKRGIPRVKPPFPANKGLWQKPTLLNNVETFANIPPIINNGGEWFSQFGVEGS 348 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 RGTK+F+++G+V VE M IT +LI + GG+ GG L A+ GG S C+P Sbjct: 349 RGTKVFALAGNVKNTGLVEVPMGITLRKLIFEIGGGVPGG-KKLKAIQTGGPSGGCIPL- 406 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ + YD +K++G+ +G+ +IVMD + ++ F ESCGQCTPCR+GT Sbjct: 407 ELIDTPITYDNMKKLGTIIGSGGMIVMDEDSCMVDVAKYFLEFTVEESCGQCTPCRDGTR 466 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 M+ ++ER+ G ++ LL ++ +NI ++C LG A P+ ++ F Sbjct: 467 RMLEILERITSGEGTMEDLQLLKDLGENIMATSLCGLGQTAPQPVISTMRYF 518 >gi|256371185|ref|YP_003109009.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM 10331] gi|256007769|gb|ACU53336.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM 10331] Length = 432 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 181/409 (44%), Positives = 241/409 (58%), Gaps = 31/409 (7%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 +LE + + EV + L GRGGAGF G KWS + K YLVVN DESEP T KD Sbjct: 35 LLELTPEQVHAEVLEANLLGRGGAGFEAGRKWSMLRKAPR---RYLVVNGDESEPATFKD 91 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 ++ +PH L+EG IA++AIGA AFIY+RGEF E +Q A+++ YA G LG N Sbjct: 92 HLLVERDPHQLVEGATIAAYAIGASVAFIYLRGEFALGLERVQQAINDAYARGALGRNIF 151 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVE 212 G+ +DI++ GAGAYICGEETALLESLEGK+G PR+KPP FPA +GLYG PT VNNVE Sbjct: 152 GSGFSLDIVLQPGAGAYICGEETALLESLEGKRGFPRIKPPYFPAVIGLYGAPTIVNNVE 211 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELIEKHCG 271 +++ +P I+R G + + G + GT++F++SG V P E M S+TF ELI Sbjct: 212 TVSNLPWIVRHGGAAFRALGAGRSTGTRIFALSGSVRRPGAFEVEMTSVTFRELIYGDAY 271 Query: 272 GIRGGWD-NLLAVIPGGSSVPC-------LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 G D L A IPGG S P LP GQ D + + GS LG+ ++IVM Sbjct: 272 GQGLEPDRELRAFIPGGVSSPWLFPEHLDLPLGQ--------DEVAKAGSMLGSGSIIVM 323 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D ++A WR++ F+ ESCGQCTPCREG W+ +V+ RL G ++ ++DLL + Sbjct: 324 DDGDCPVRAAWRIARFFARESCGQCTPCREGGTWIEQVLRRLELGYGREEDLDLLLDACD 383 Query: 384 NIE--------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 NI TIC LG + + I+ FR + I + RC + Sbjct: 384 NISPGVTWPPAQTTICVLGPSIPPSVVAAIRRFRDVFLTHIKE-ERCPY 431 >gi|91200210|emb|CAJ73254.1| strongly similar to proton-translocating NADH dehydrogenase I, 51 kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis] Length = 552 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 160/403 (39%), Positives = 245/403 (60%), Gaps = 5/403 (1%) Query: 18 KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 K +S+ + R + ++K+L D +I EVKASGLRGRGGAGF TG KW D Sbjct: 149 KKISEYILRNGYVALEKVLSGMSPDKVIEEVKASGLRGRGGAGFPTGKKWESAKNAVGDE 208 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N DE +PG DR ++ +PH++IEG +I +AIG+ IYVR E+ E + Sbjct: 209 -KYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGSGKGIIYVREEYPIAVEHV 267 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + + GLLG N G+ DI V GAGA++CGEETAL+ S+EG++G PR +PPF Sbjct: 268 KIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETALIASIEGERGMPRPRPPF 327 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE++A +P I+ GA ++S G E+++GTK+F+++G VN VE Sbjct: 328 PAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSKGTKIFALAGSVNNTGLVE 387 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T EL+ + GGI A GG S C+P Q +DY+ +KE+G+ + Sbjct: 388 VPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPE-QYLDTPIDYESVKEVGAIM 445 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +I+MD +T +++ F ++ESCG+CTPCR GT M+ ++ R+ G ++ +I Sbjct: 446 GSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKRMLEILTRIANGEGEREDI 505 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LL E+++ ++C LG +A P+ ++ F+ EE I + Sbjct: 506 GLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIAK 548 >gi|104782525|ref|YP_609023.1| NADH dehydrogenase I subunit F [Pseudomonas entomophila L48] gi|95111512|emb|CAK16232.1| NADH dehydrogenase I chain F [Pseudomonas entomophila L48] Length = 454 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 167/399 (41%), Positives = 233/399 (58%), Gaps = 7/399 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L++ S+ + K L E D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 34 LAEYESKNGYAAARKALAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIR 93 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ ++L Sbjct: 94 YLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNR 153 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 154 AIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVE 255 VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P E Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWE 273 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 +T EL E + GG+R G+ L PGG+ L + A M G+ ++G+ + Sbjct: 274 LPFGVTARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRM 331 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L KG + +I Sbjct: 332 GTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGRAEDI 391 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 + L + + GRT CA A P+ IK FR E Sbjct: 392 ETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFE 430 >gi|39998530|ref|NP_954481.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA] gi|39985477|gb|AAR36831.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA] Length = 423 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 160/369 (43%), Positives = 223/369 (60%), Gaps = 6/369 (1%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 + LRGRGGAGF TG KWSF+P+ P YL+ N DE EPGT KDR ++ P++L+EG Sbjct: 48 ANLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRILLEANPYSLVEGM 106 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168 +A++AIG AFI++R + E+ + A+ E +GLLG N G+ +D+ VH AG Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKEAGLLGKNILGSGFSLDLDVHQSAG 166 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 YICGEETAL+ +LEG++ PR KPPFPA GL+G PT VNNVE++A +P I+ GA+W+ Sbjct: 167 RYICGEETALMNALEGRRANPRSKPPFPAVKGLWGRPTVVNNVETLANIPAIVANGAAWF 226 Query: 229 SGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 G R GTKLF +SGHVN E + ++ E+I+ CGG+ G + A IPGG Sbjct: 227 KGLARISEAAGTKLFCVSGHVNNAACFELPLGMSLGEIIDGPCGGMLPGRE-FKACIPGG 285 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 +S P + MD+D + GS LGT ++V DR+T ++ A L FY ESCG Sbjct: 286 ASTPFF-TREHWNVPMDFDAVARAGSRLGTGGIVVFDRNTCMVAATLNLVSFYARESCGW 344 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCREG ++ V+ R+ G ++ I +L E + + C L A P++GL++ Sbjct: 345 CTPCREGLPFVKDVLARIEAGAGREEHIAILREHVQYLN-YAFCPLAPGAMGPVEGLLRL 403 Query: 408 FRPLIEERI 416 F I E I Sbjct: 404 FEDEIREHI 412 >gi|82702146|ref|YP_411712.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis ATCC 25196] gi|82410211|gb|ABB74320.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196] Length = 425 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 167/415 (40%), Positives = 243/415 (58%), Gaps = 8/415 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72 G + L+ G + + K L I VK S LRGRGGAGF T KWSF+P Sbjct: 12 GREPPDLAQYEKAGGYGALRKALGMAPAEIQAAVKESNLRGRGGAGFPTAQKWSFVPMGD 71 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + RP YLV NADE EPGT KDR ++ +PH LIEG +I+++AI A A++++R + Sbjct: 72 DAPRPKYLVCNADEMEPGTFKDRMLLEGDPHQLIEGIIISAYAIQADVAYVFLRWAYKLA 131 Query: 133 RESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 ++ A+ E Y G LG N LG Y +++ +H AG YICGEETALL +LEGK+ PR Sbjct: 132 ARRVERAIVEAYRHGYLGKNI-LGSAYSLEMHLHVSAGRYICGEETALLNALEGKRANPR 190 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 KPP+P GL+G PT VN+VE++ VP I+++GA W+ R ++ GTKL+ SG V Sbjct: 191 AKPPYPQVSGLWGKPTIVNSVETLCNVPHIVKQGAEWFRSLSRSDDGGTKLYGASGRVKN 250 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E M E++E+H GG+R G+ V+PGG+S + A + A MD+D +++ Sbjct: 251 PGLWELPMGTPLREILEEHAGGMRDGY-QFRGVLPGGASTDFVTAEHLDVA-MDFDSVQK 308 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT +I++D T + + L F+ ESCG CTPC G W+ ++++ + +G Sbjct: 309 AGSRLGTGTMIILDDKTCPVGMLLNLEHFFAQESCGWCTPCWSGLSWIEQILQDMEEGRG 368 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + +++LL ++ + G T CAL AA P+Q +K FR E I + RC + Sbjct: 369 RASDLELLESHTRLLGPGHTFCALAPGAAEPLQSGLKYFRDDFERHIHE-KRCPW 422 >gi|167034691|ref|YP_001669922.1| NADH dehydrogenase subunit I F [Pseudomonas putida GB-1] gi|166861179|gb|ABY99586.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida GB-1] Length = 454 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 166/399 (41%), Positives = 234/399 (58%), Gaps = 7/399 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L++ S+ + K L + +D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 34 LAEYESKNGYAAARKALAQMSQDDIVQAVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIR 93 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ ++L Sbjct: 94 YLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNR 153 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 154 AIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVE 255 VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P E Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWE 273 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 +T EL E + GG+R G+ L PGG+ L + A M G+ ++G+ + Sbjct: 274 LPFGVTARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRM 331 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L KG + +I Sbjct: 332 GTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGRAEDI 391 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 + L + + GRT CA A P+ IK FR E Sbjct: 392 ETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFE 430 >gi|169634177|ref|YP_001707913.1| NADH dehydrogenase I chain F [Acinetobacter baumannii SDF] gi|169797054|ref|YP_001714847.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE] gi|213156540|ref|YP_002318201.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057] gi|215484515|ref|YP_002326750.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB307-0294] gi|301347790|ref|ZP_07228531.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB056] gi|301510625|ref|ZP_07235862.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB058] gi|301595910|ref|ZP_07240918.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB059] gi|332852143|ref|ZP_08433970.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150] gi|332867542|ref|ZP_08437695.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113] gi|169149981|emb|CAM87875.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE] gi|169152969|emb|CAP02015.1| NADH dehydrogenase I chain F [Acinetobacter baumannii] gi|213055700|gb|ACJ40602.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057] gi|213987937|gb|ACJ58236.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB307-0294] gi|332729515|gb|EGJ60854.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150] gi|332733959|gb|EGJ65104.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113] Length = 443 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 229/378 (60%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG+N G++ ++ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGNNILGSGWNFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD + + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K+FR E ++ Sbjct: 412 EPLMGALKHFRSEFEAKV 429 >gi|299771415|ref|YP_003733441.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter sp. DR1] gi|298701503|gb|ADI92068.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter sp. DR1] Length = 443 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 160/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD D + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDADTIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K+FR E ++ Sbjct: 412 EPLMGALKHFRGEFEAKV 429 >gi|349637|gb|AAA16062.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 431 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 154/354 (43%), Positives = 217/354 (61%), Gaps = 4/354 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL G WY + + GTKL SG V P E T E++E + GG+R G Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICA 392 + ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCA 399 >gi|239501290|ref|ZP_04660600.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii AB900] Length = 443 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD + + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K+FR E ++ Sbjct: 412 EPLMGALKHFRSEFEAKV 429 >gi|301062485|ref|ZP_07203131.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] gi|300443415|gb|EFK07534.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] Length = 540 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 160/420 (38%), Positives = 245/420 (58%), Gaps = 6/420 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 Q I N + + + + ++ G + + K+L R+ +I+E+K SGLRG GGAGF TG Sbjct: 115 QRTILRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGAGFPTG 174 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW K + Y++ N DE +PG +DR +M PH+++EG +IA++AIGA +I Sbjct: 175 RKWEVCYKAQGPK-KYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGAQQGYI 233 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ + L+ A+ + G LG + G+D I + GAGA++CGEETAL+ S+ Sbjct: 234 YVRAEYPLAVKRLRIAISQAKQKGFLGKDILGSGFDFKIALFQGAGAFVCGEETALIASV 293 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG +G PRL+PPFPA G+ G PT ++NV+++A +P I+ +GA ++ G E ++GT +F Sbjct: 294 EGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPVIIDQGAESFARVGTEKSKGTVVF 353 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G V +E M +T E+I GGI G AV GG S CLP + + Sbjct: 354 ALTGKVENNGLIEVPMGMTLREIIFDIGGGIPDG-KTFKAVQTGGPSGGCLPESALDMPV 412 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 D+D LK GS +G+ ++VMD T ++ F + ESCGQCTPCR GT + ++ Sbjct: 413 -DFDSLKAAGSMMGSGGLVVMDEDTCMVDLARYFLDFTQRESCGQCTPCRLGTKQLFDIL 471 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + KG + +IDLL E+S+ + ++CALG A P+ I+ FR E I++ RC Sbjct: 472 NDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHINE-KRC 530 >gi|184157033|ref|YP_001845372.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii ACICU] gi|260555654|ref|ZP_05827874.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter baumannii ATCC 19606] gi|332872608|ref|ZP_08440576.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059] gi|183208627|gb|ACC56025.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii ACICU] gi|260410565|gb|EEX03863.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter baumannii ATCC 19606] gi|322506932|gb|ADX02386.1| nuoF [Acinetobacter baumannii 1656-2] gi|323516799|gb|ADX91180.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii TCDC-AB0715] gi|332739137|gb|EGJ69996.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059] Length = 443 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD + + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K+FR E ++ Sbjct: 412 EPLMGALKHFRSEFEAKV 429 >gi|262369337|ref|ZP_06062665.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046] gi|262315405|gb|EEY96444.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046] Length = 443 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 158/378 (41%), Positives = 227/378 (60%), Gaps = 6/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M + P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEKLP 114 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA++ + A +I++RGE+I L A+++ A G LG N G++ ++ Sbjct: 115 HQLIEGMLIAAYTLEATHGYIFIRGEYIEAAAYLNEALEQVRAKGYLGENILGTGWNFEL 174 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE + GG+R G Sbjct: 235 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDYAGGMRDGL-K 293 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S L A + MD + + + GS LGT ++V+D + ++ A L F Sbjct: 294 LKAWLPGGASTDFLAAEHID-LPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 412 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K FR E ++ Sbjct: 413 EPLMGALKYFRGEFEAKV 430 >gi|163782978|ref|ZP_02177973.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] gi|159881658|gb|EDP75167.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] Length = 425 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 167/391 (42%), Positives = 236/391 (60%), Gaps = 11/391 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ + + G + ++K L + II+ V+ S LRGRGGAGF TG KW F V + P Sbjct: 30 SIEEYLKEGGYQALEKALNMSPEEIIDWVEKSTLRGRGGAGFPTGTKWKFA--VQNPAPR 87 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y + NADESEPGT KDR ++ +PH L+EG +I+S+A+GA+ AFIY+RGE+ L Sbjct: 88 YFICNADESEPGTFKDRILIERDPHLLLEGMIISSYAVGANEAFIYIRGEYPAGYYILLD 147 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E G LG + G+D++I V G GAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 148 AIEEAKEKGFLGKDILGSGFDLEIYVARGGGAYICGEETALIESLEGKRGHPRLKPPYPV 207 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT VNNVE+I VP I+ G Y G + G KLF +SG V P E Sbjct: 208 QVGLFGRPTVVNNVETICNVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELP 267 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M+ T E+I K+ GG G + AV G ++ C AG+ MDY G G GT Sbjct: 268 MNTTLREVIYKYAGGTVGN-KKVKAVFSG--ALDCF-AGEELDMPMDYS---PFGFG-GT 319 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 V+V+ DI++A +++ FY+HE+CGQCTPCR G +++R+ +G A +++ + Sbjct: 320 GTVMVLTEDDDIVEACLQVAKFYEHETCGQCTPCRVGCHEQAVLLDRIYRGEASEKDWEG 379 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ I+ +IC LG A I+ ++ F Sbjct: 380 FVFINRYIQPTSICGLGAVAGRLIKQAMEKF 410 >gi|255318320|ref|ZP_05359555.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82] gi|262379064|ref|ZP_06072220.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter radioresistens SH164] gi|255304632|gb|EET83814.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82] gi|262298521|gb|EEY86434.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter radioresistens SH164] Length = 442 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 225/381 (59%), Gaps = 6/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ VKA+ ++GRGGAGF G+KWS M + P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEIVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMERLP 114 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILDTGWNFEM 174 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 175 YVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R G Sbjct: 235 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 293 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S L A + MD D + + GS LGT ++V D + ++ A L F Sbjct: 294 LKAWLPGGASTDFLTADHI-DLPMDSDSIMKAGSRLGTCLLMVFDENQCMVSATRNLEEF 352 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ + + G + +I L E++K + G+T CA A Sbjct: 353 FARESCGWCTPCRDGLPWSVKALRSIENGEGKMEDIQHLQELTKKLWIGKTFCAHAPGAM 412 Query: 399 WPIQGLIKNFRPLIEERIDQY 419 P+Q +K +R E +I + Sbjct: 413 EPLQSALKYWRHEFEAKIKDH 433 >gi|292492184|ref|YP_003527623.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] gi|291580779|gb|ADE15236.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] Length = 430 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 154/382 (40%), Positives = 226/382 (59%), Gaps = 7/382 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100 + VK S LRGRGGAGF TGMKWSF+P + D PH YL+ NADE EPGT KDR +M Sbjct: 47 VQQTVKDSKLRGRGGAGFPTGMKWSFIP-MGDDAPHPKYLIANADEMEPGTFKDRLLMEG 105 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH L+E +++S+A A A+I++R E+ L+ A E GLLG + G+ + Sbjct: 106 DPHQLLEAMIVSSYATQADVAYIFLRDEYKLAAHRLKQAAQEAREQGLLGKHILGSGFSL 165 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + +H AG YICGEETAL+ SLEGK+ PR KPP+P GL+G PT VNNVE++ VP Sbjct: 166 EFHIHTSAGRYICGEETALVTSLEGKRAIPRQKPPYPQTCGLWGKPTVVNNVETLCNVPH 225 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ GA WY R + GTK++ SG V P E M E++E++ GG++ G+ Sbjct: 226 IINHGAEWYQNLSRSEDGGTKIYGTSGRVKRPGAWELPMGTPIREILEEYAGGMQEGY-T 284 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 ++PGG+S L + MD+D + ++GS +GT +I++D T + + L F Sbjct: 285 FRGLLPGGASTDFLVEEHLE-TPMDFDAVMKVGSRMGTGGMIILDDKTCPVAMVLNLERF 343 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W+ +++ + +G Q ++++L ++ + G+T C A Sbjct: 344 FAQESCGWCTPCRDGLPWVAHILQAIEEGRGQMEDLEILEMHTQFLGPGKTFCMHAPGAM 403 Query: 399 WPIQGLIKNFRPLIEERIDQYH 420 P+Q +K FR E+ I + H Sbjct: 404 EPLQSALKYFREDFEQHIREQH 425 >gi|116515042|ref|YP_802671.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256896|gb|ABJ90578.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 438 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 5/377 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHE 101 II +K SGLRGRGGAGF TG+KW+ M K ++ YL+ NADE EPGT KDR +M Sbjct: 52 IILLIKESGLRGRGGAGFPTGIKWNLMLKSNIKEKIRYLICNADEMEPGTYKDRFLMERL 111 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 PH LIEG +I +F + CA+I++RG++ + L ++DE Y G LG N G++ + Sbjct: 112 PHQLIEGIIICAFTLHISCAYIFLRGDYYVAEKILNKSIDEAYQLGYLGKNILNSGFNFN 171 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + +H GAG YICGEETAL+ SLEG + PR KPPFPAN GL+G PT +NNVE+++ +P I Sbjct: 172 LFLHTGAGRYICGEETALINSLEGLRANPRFKPPFPANYGLWGKPTCINNVETLSNIPAI 231 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 ++ G+ WY + + GTKL SG V P E + IT E++E + GG++ L Sbjct: 232 IQHGSEWYKNLSKGKDSGTKLLGFSGKVKNPGLWELPLGITAREVLEDYAGGMKKNLF-L 290 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 A PGG+ L + MD+ +E+GS LGT + +D + +II + + +F+ Sbjct: 291 KAWQPGGAGTDILSHKDI-DIKMDFTSFQEIGSRLGTGISMAIDNNINIISLLINIEIFF 349 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAW 399 ESCG CTPCREG W++++++ L K +K +I +L E+ ++ G+T CA A Sbjct: 350 SRESCGFCTPCREGLPWIVKLLKNLEKKNGKKEDIKILDELCISLGPGKTFCAHAPGAIS 409 Query: 400 PIQGLIKNFRPLIEERI 416 P++ +K FR E I Sbjct: 410 PLKSALKLFRNEFENSI 426 >gi|170721053|ref|YP_001748741.1| NADH dehydrogenase subunit I F [Pseudomonas putida W619] gi|169759056|gb|ACA72372.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida W619] Length = 458 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 6/383 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M +PH L+EG +I++ A+ A+ +I++RGE+ ++L A+DE A+GLLG N Sbjct: 110 RMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E +T EL E + G Sbjct: 230 LCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ L G + +I+ L + + GRT Sbjct: 348 LLRNMEEFFARESCGWCTPCRDGLPWSVKMLRSLENGQGRAEDIETLLGLVNFLGPGRTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIE 413 CA A P+ IK FR E Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFE 430 >gi|15616778|ref|NP_239990.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133964|sp|P57256|NUOF_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|25285047|pir||D84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain F [imported] - Buchnera sp. (strain APS) gi|10038841|dbj|BAB12876.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 444 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 234/384 (60%), Gaps = 8/384 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100 +IN VK SGL+GRGGAGFSTG+KWS M + S YL+ NADE EPGT KDR ++ Sbjct: 50 VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158 PH LIEG +++++A+ A+I++RGE+++ L+ ++ E G +G N LG ++ Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNI-LGSNFN 168 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +++++H GAG YICGEETAL+ SLEG++ PR KPPFPA GL+G PT VNNVE+++ VP Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVP 228 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ G SWY + ++ GTKL SG+V P E T E++E + G++ G+ Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +L A PGG+ L + MD+ + + GS LGTA + +D T ++ ++ + Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDNKTSMVSLVYNIEK 346 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397 F+ ESCG CTPCR+G W++++++ L + K ++ L ++ ++ G+T CA A Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406 Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421 P+Q IK FR E I+ R Sbjct: 407 IEPLQSAIKYFRSEFESGINIRKR 430 >gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] Length = 596 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 170/417 (40%), Positives = 250/417 (59%), Gaps = 6/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +S+ + ++ G +D + K L E + ++ EVK SGLRGRGG GF TG+KW Sbjct: 119 VLANCGHINPESIEEYIAVGGYDALAKALTEMTPEQVVAEVKKSGLRGRGGGGFPTGLKW 178 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F D+ Y+V NADE +PG DR ++ +PH +IEG I +AIGA ++YVR Sbjct: 179 EFTRNAKGDK-KYVVCNADEGDPGAFMDRSVLEGDPHRVIEGMAICGYAIGADEGYVYVR 237 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L+ A+ + GLLG N G++ + + GAGA++CGEETALL S+EGK Sbjct: 238 AEYPLAIKRLKLAIKQAEDMGLLGDNILGTGFNFHLKIKEGAGAFVCGEETALLASIEGK 297 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA GL+G PT +NNVE+ A VP I+ RGA WY+ G E ++GTK+F+++ Sbjct: 298 RGMPRPRPPFPAISGLWGKPTNINNVETFANVPQIITRGADWYASIGTERSKGTKVFALT 357 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G +N E M IT E+I GGI GG AV GG S CLP ++ +DY Sbjct: 358 GRINNTGLAEVPMGITMREIIYDIGGGIPGG-RKFKAVQIGGPSGGCLPE-ELLDLPIDY 415 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L + G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT M+ ++ R+ Sbjct: 416 DSLTQAGAMMGSGGLVVMDETTCMVDVAKFFLNFTQSESCGKCTPCREGTKRMLEILTRI 475 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +G + +I LL +++KNI+ +C LG A P+ ++ FR E I+ RC Sbjct: 476 TEGKGRPDDIALLEDLAKNIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIND-KRC 531 >gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] Length = 625 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 160/411 (38%), Positives = 243/411 (59%), Gaps = 5/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + D+++ G ++ +K + E + +I + S LRGRGGAGF TG KW Sbjct: 147 VLKNCGHIDAEHIEDALAVGAYEAFEKAVFEMTPEAVIKTITQSNLRGRGGAGFQTGRKW 206 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+ A +IYVR Sbjct: 207 SQVAGQ-KEKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQAQEGYIYVR 265 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ L+ A+ + G+LG N G+ + ++ GAGA++CGE +AL S+EGK Sbjct: 266 AEYPLAVSRLRIAIRQAEELGILGDNILGTGFSFHLHINRGAGAFVCGEGSALTASIEGK 325 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP GL+G PT +NNVE+ A VP I++ GA WY+G G + GTK F+++ Sbjct: 326 RGMPRVKPPRTVEKGLFGKPTVLNNVETYANVPMIVKHGADWYTGIGTPESPGTKAFALT 385 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G+VN +E M IT E+I GGIR G AV GG S CL Q+ MD+ Sbjct: 386 GNVNNTGLIEVPMGITLREIIFDIGGGIRDG-KKFKAVQIGGPSGGCLTESQLDSK-MDF 443 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L ++G+ +G+ ++VMD +T +++ F + ESCG+C PCREGT M+ ++ER+ Sbjct: 444 DSLTKIGAMIGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEILERI 503 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V G ++ +I+ L E++ IE +C LG +A P+ I+ FR EE I Sbjct: 504 VAGEGREGDIEELEELADMIENTALCGLGKSAPKPVISTIQAFREEYEEHI 554 >gi|116624103|ref|YP_826259.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus Ellin6076] gi|116227265|gb|ABJ85974.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus Ellin6076] Length = 548 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 154/386 (39%), Positives = 236/386 (61%), Gaps = 8/386 (2%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ V I E +I +VK+S LRGRGGAG+ TG+KWS + K ++ Y++ NADE Sbjct: 144 GYAALVTAITEMSPQEVIEQVKSSSLRGRGGAGYPTGLKWSTVAKT-GEQQKYVICNADE 202 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR ++ +PH ++EG IA+FA+GA FIYVR E+ + L+ A+ + Sbjct: 203 GDPGAFMDRAVLESDPHRVLEGMAIAAFAVGAQKGFIYVRAEYPLAVKHLKGAIRQAERL 262 Query: 147 GLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG++ ++ + +DI + GAGA++CGEETAL+ S+EGK+G PR +PPFPA GL+ Sbjct: 263 GLLGNSICGTRFSFHIDIRL--GAGAFVCGEETALIASIEGKRGTPRPRPPFPAESGLWE 320 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 CPT +NNVE+ A + ILR GA+W++ G E ++GTK+F+++G V +E M IT Sbjct: 321 CPTLINNVETFANIAPILRNGAAWFAAIGTERSKGTKVFALAGRVANTGLIEVPMGITLR 380 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG+ G AV GG S C+P + + DY+ L +GS +G+ +IVM Sbjct: 381 EIIHEIGGGVPDG-KRYKAVQTGGPSGGCIPEQHLDSPV-DYESLARIGSIMGSGGMIVM 438 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D+++ ++ F ESCG+C PCR GT M ++E++ G A +++ LL E+ Sbjct: 439 DQTSCMVDVAKYFMEFCMSESCGKCIPCRAGTQQMHAILEKITAGEATAQDVALLEELCD 498 Query: 384 NIEGRTICALGDAAAWPIQGLIKNFR 409 + ++C LG +A P+ +K FR Sbjct: 499 LVRSTSLCGLGQSAPNPVVTTLKYFR 524 >gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana) tropicalis] Length = 1458 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 169/326 (51%), Positives = 212/326 (65%), Gaps = 14/326 (4%) Query: 14 GLQGK--SLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFSTGMK 65 GL G+ SL D +RG + + KIL +D +I VK SGLRGRGGAGF TG+K Sbjct: 32 GLNGRNWSLKDYEARGGYAALRKILGADGGAGMTQDQVIATVKESGLRGRGGAGFPTGLK 91 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ + H LV N+DE EPGTCKDRDI+ + PH +IEG +I ++A+G + Y+ Sbjct: 92 WSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIGAYAMGISLGYNYI 150 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183 GE + E +AA++E A+G LG + LG + + HHG GAYICGEETALLESLE Sbjct: 151 HGEIFQAYERFEAALEEARAAGYLG-DQILGSHFSFQLHAHHGFGAYICGEETALLESLE 209 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECGKPNNGGTKIFS 269 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG V P E + F +L+E GG+R G L AVIPGGSS P LPA M M Sbjct: 270 VSGDVERPGNYEIPLGTPFTKLLEL-AGGVRKG-RQLKAVIPGGSSSPVLPAHIMMDCTM 327 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDI 329 DYD + + GS LG+ A+IVMD S D+ Sbjct: 328 DYDAISKAGSMLGSGALIVMDDSRDM 353 >gi|260551029|ref|ZP_05825234.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624] gi|260405977|gb|EEW99464.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624] Length = 443 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 227/378 (60%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD + + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA A Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ G +K+FR E ++ Sbjct: 412 EPLMGALKHFRSEFEAKV 429 >gi|219682089|ref|YP_002468473.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621822|gb|ACL29978.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085900|gb|ADP65982.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086473|gb|ADP66554.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 444 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 154/380 (40%), Positives = 233/380 (61%), Gaps = 8/380 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100 +IN VK SGL+GRGGAGFSTG+KWS M + S YL+ NADE EPGT KDR ++ Sbjct: 50 VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158 PH LIEG +++++A+ A+I++RGE+++ L+ ++ E G +G N LG ++ Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNI-LGSNFN 168 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +++++H GAG YICGEETAL+ SLEG++ PR KPPFPA GL+G PT VNNVE+++ VP Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVFGLWGKPTCVNNVETLSNVP 228 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ G SWY + ++ GTKL SG+V P E T E++E + G++ G+ Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +L A PGG+ L + MD+ + + GS LGTA + +D T ++ ++ + Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDDKTSMVSLVYNIEK 346 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397 F+ ESCG CTPCR+G W++++++ L + K ++ L ++ ++ G+T CA A Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406 Query: 398 AWPIQGLIKNFRPLIEERID 417 P+Q IK FR E I+ Sbjct: 407 IEPLQSAIKYFRSEFESGIN 426 >gi|219681533|ref|YP_002467918.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471214|ref|ZP_05635213.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624376|gb|ACL30531.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 444 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 234/384 (60%), Gaps = 8/384 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100 +IN VK SGL+GRGGAGFSTG+KWS M + S YL+ NADE EPGT KDR ++ Sbjct: 50 VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158 PH LIEG +++++A+ A+I++RGE+++ L+ ++ E G +G N LG ++ Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNI-LGSNFN 168 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +++++H GAG YICGEETAL+ SLEG++ PR KPPFPA GL+G PT VNNVE+++ VP Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVP 228 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ G SWY + ++ GTKL SG+V P E T E++E + G++ G+ Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +L A PGG+ L + MD+ + + GS LGTA + +D T ++ ++ + Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDDKTSMVSLVYNIEK 346 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397 F+ ESCG CTPCR+G W++++++ L + K ++ L ++ ++ G+T CA A Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406 Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421 P+Q IK FR E I+ R Sbjct: 407 IEPLQSAIKYFRSEFESGINIRKR 430 >gi|313498027|gb|ADR59393.1| NADH-quinone oxidoreductase subunit F [Pseudomonas putida BIRD-1] Length = 458 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 161/377 (42%), Positives = 224/377 (59%), Gaps = 6/377 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 56 DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH L+EG +I++ A+ A+ +I++RGE+ ++L A+DE A+GLLG N G+D Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNILGSGFDF 175 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235 Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+ G WY RE + GTKL SG V P E +T EL E + GG+R G+ Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L PGG+ L + A M G+ ++G+ +GT + +D S +++ + + Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNME 353 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L +G + +I+ L + + GRT CA Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALERGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413 Query: 397 AAWPIQGLIKNFRPLIE 413 A P+ IK FR E Sbjct: 414 AVEPLGSAIKYFRSEFE 430 >gi|301060418|ref|ZP_07201277.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] gi|300445472|gb|EFK09378.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] Length = 540 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 160/420 (38%), Positives = 243/420 (57%), Gaps = 6/420 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 Q + N + + + + ++ G + + K+L R+ +I+E+K SGLRG GGAGF TG Sbjct: 115 QRTLLRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGAGFPTG 174 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW K D Y++ N DE +PG +DR +M PH+++EG +IA++AIGA +I Sbjct: 175 RKWEVCYKA-QDTKKYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGAQQGYI 233 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ + L+ A+ + G LG + G+D I + GAGA++CGEETAL+ S+ Sbjct: 234 YVRAEYPLAVKRLRIAISQAKKKGFLGKDILGSGFDFKIALFQGAGAFVCGEETALIASV 293 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG +G PRL+PPFPA G+ G PT ++NV+++A +P I+ GA + G E ++GT +F Sbjct: 294 EGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPIIIDEGAESFVRIGTEKSKGTVVF 353 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G V +E M +T E+I GGI G AV GG S CLPA + + Sbjct: 354 ALTGKVENNGLIEVPMGMTLREIIFDIGGGIPDG-KAFKAVQTGGPSGGCLPASFLDMPV 412 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 D+D LK GS +G+ ++VMD T ++ F + ESCGQC PCR GT + ++ Sbjct: 413 -DFDSLKAAGSMMGSGGLVVMDEETCMVDLARYFLDFTQRESCGQCIPCRLGTKQLFDIL 471 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + KG + +IDLL E+S+ + ++CALG A P+ I+ FR E I++ RC Sbjct: 472 NDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHINE-KRC 530 >gi|159027690|emb|CAO89555.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 535 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 150/394 (38%), Positives = 243/394 (61%), Gaps = 10/394 (2%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + ++ G + ++ K L E ++ E+ SGLRGRGGAG+ TG+KW+ + K + Sbjct: 132 IEEYIAVGGYQSLYKALYEMTPAQVVEEITKSGLRGRGGAGYPTGLKWATVAKQ-PGKQK 190 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE +PG DR ++ +PH ++EG IA++A+GA +IYVR E+ + LQ Sbjct: 191 YVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGADHGYIYVRAEYPLAIDRLQK 250 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ GL+GS S + VDI + GAGA++CGEETAL+ S+EG +G PR +PP+ Sbjct: 251 AINQAKKFGLMGSQVFESTFDFKVDIRI--GAGAFVCGEETALIHSIEGGRGTPRTRPPY 308 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL GCPT +NNVES A + I+R GA+WY+ G ++GTK+F+++G ++ +E Sbjct: 309 PAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTATSKGTKIFALTGKISNNGLIE 368 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT E++E+ GG+ G + AV GG S C+PA + + DY+ L ++GS + Sbjct: 369 VPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPANLLDTPV-DYESLAKLGSMM 425 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++VMD ST ++K F + ESCG+C PCR GT M ++ +++ G A ++ Sbjct: 426 GSGGMVVMDDSTSMVKVAKFYMEFCREESCGKCIPCRTGTVQMFELLAKIIDGKADIHDL 485 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + L + + ++ ++C LG +A PI ++ F+ Sbjct: 486 ENLEHLCQMVKETSLCGLGQSAPNPILSTLQYFK 519 >gi|311087054|gb|ADP67134.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 444 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 154/380 (40%), Positives = 233/380 (61%), Gaps = 8/380 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100 +IN VK SGL+GRGGAGFSTG+KWS M + S YL+ NADE EPGT KDR ++ Sbjct: 50 VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158 PH LIEG +++++A+ A+I++RGE+++ L+ ++ E G +G N LG ++ Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKKSIQEAINFGFIGLNI-LGSNFN 168 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +++++H GAG YICGEETAL+ SLEG++ PR KPPFPA GL+G PT VNNVE+++ VP Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVP 228 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ G SWY + ++ GTKL SG+V P E T E++E + G++ G+ Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +L A PGG+ L + MD+ + + GS LGTA + +D T ++ ++ + Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDDKTSMVSLVYNIEK 346 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397 F+ ESCG CTPCR+G W++++++ L + K ++ L ++ ++ G+T CA A Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406 Query: 398 AWPIQGLIKNFRPLIEERID 417 P+Q IK FR E I+ Sbjct: 407 IEPLQSAIKYFRSEFESGIN 426 >gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 170/414 (41%), Positives = 253/414 (61%), Gaps = 5/414 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTG 63 Q + +N + +S+ + ++ + V + L +I+EVK +GLRGRGG GF TG Sbjct: 118 QRVVLSNCGRVDPESIKEYIAEDGYQAVGETLTTMTSQEVIDEVKEAGLRGRGGGGFPTG 177 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F D+ Y++ NADE +PG DR I+ +PH +IEG +IA++AIGA +I Sbjct: 178 IKWQFAHDSEDDK-KYIICNADEGDPGAFMDRSILEGDPHRVIEGMIIAAYAIGASEGYI 236 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ E L+ A+++ GLLG N + G+D + + GAGA++CGEETAL+ S+ Sbjct: 237 YVRAEYPLAIERLEKAIEQAEEYGLLGDNLFESGFDFKLQIKKGAGAFVCGEETALMNSI 296 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR +PPFPA GL+G P+ +NNVE+ A VP I+ +GA YS G E++ GTK+F Sbjct: 297 EGKRGMPRPRPPFPAQKGLWGYPSNINNVETYANVPVIINQGADEYSKVGTEDSTGTKIF 356 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +I+G + E M IT E+I GGI GG D AV GG S CLP ++ ++ Sbjct: 357 AITGKIQNTGLAEVPMGITMREIIYDVGGGIMGGKD-FKAVQIGGPSGGCLPEEKLDLSV 415 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DYD L E G+ +G+ ++VMD T ++ F + ESCG+CTPCREGT M+ ++ Sbjct: 416 -DYDSLIEAGAMMGSGGLVVMDEDTCMVDVAKFFLDFTQSESCGKCTPCREGTKRMLEIL 474 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +R+ G ++ +I+LL E+S +I+ ++C LG +A P+ I+ FR E I Sbjct: 475 KRITAGEGKEGDIELLEELSHHIKSTSLCGLGQSAPNPVLSTIQYFRDEYEAHI 528 >gi|26990817|ref|NP_746242.1| NADH dehydrogenase I subunit F [Pseudomonas putida KT2440] gi|148546980|ref|YP_001267082.1| NADH dehydrogenase subunit I F [Pseudomonas putida F1] gi|24985823|gb|AAN69706.1|AE016606_9 NADH dehydrogenase I, F subunit [Pseudomonas putida KT2440] gi|148511038|gb|ABQ77898.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida F1] Length = 453 Score = 295 bits (755), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 161/377 (42%), Positives = 223/377 (59%), Gaps = 6/377 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 56 DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH L+EG +I++ A+ A+ +I++RGE+ ++L A+DE A+GLLG N G+D Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNILGSGFDF 175 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235 Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+ G WY RE + GTKL SG V P E +T EL E + GG+R G+ Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L PGG+ L + A M G+ ++G+ +GT + +D S +++ + + Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNME 353 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L G + +I+ L + + GRT CA Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALENGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413 Query: 397 AAWPIQGLIKNFRPLIE 413 A P+ IK FR E Sbjct: 414 AVEPLGSAIKYFRSEFE 430 >gi|269926644|ref|YP_003323267.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798] gi|269790304|gb|ACZ42445.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798] Length = 580 Score = 295 bits (755), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 168/421 (39%), Positives = 254/421 (60%), Gaps = 7/421 (1%) Query: 5 QDRIFTNLYGLQG-KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI G Q +SL D ++ G + ++K L E +D II EVKAS LRGRGGAGF Sbjct: 139 QHRILLANCGWQNPESLEDYLALGGFSALEKALFEMSQDEIIAEVKASNLRGRGGAGFPA 198 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +RP Y++VNA E EP KDR ++ +P+ +IEG +IA++A+G + + Sbjct: 199 GIKWE-SARSERNRPKYVIVNAHEGEPNVFKDRRLIEGDPYAVIEGLMIAAWAVGVNDGY 257 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYV E+ E L A+ + GLLG + G+D DI V GAGAYI GE +A + Sbjct: 258 IYVGSEYPLAMERLNRAIRRMHQVGLLGKDILGSGFDFDIKVVPGAGAYISGEASAAIYG 317 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 ++G+KG PR KPP A GL+G PT VNNVE++A VP I+ +GA W++ G EN+ GTK+ Sbjct: 318 IQGQKGFPRTKPPRSAEAGLWGKPTVVNNVETLANVPHIINKGAQWFASIGTENSTGTKV 377 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++G +N+ VE M IT +L+ GG+R G AV+ GG S LP + Sbjct: 378 FSLAGDINHVSLVEADMGITMRDLLFVAGGGMRNG-AKFKAVLAGGISGGALPESTL-DL 435 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 ++ L+ GS +G+ I+ D +T ++ + + F + ESCG+C PCR GT + + Sbjct: 436 TNEFGTLEAEGSMMGSGGYIIYDENTCMVDLAFYCTRFNRDESCGKCVPCRIGTSAQLAM 495 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R++KG+ ++ +ID L + S++I ++C LG AA P+ ++++FR +E I + R Sbjct: 496 LDRIMKGLGEEIDIDRLTQSSEDIIAYSLCGLGQAAPIPVLSVLRHFRDEVEAHIRE-KR 554 Query: 422 C 422 C Sbjct: 555 C 555 >gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Coprococcus catus GD/7] Length = 594 Score = 295 bits (755), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 158/394 (40%), Positives = 229/394 (58%), Gaps = 4/394 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + + G ++ + ++L E D +I + ASGLRGRGGAGF TGMKW F + Sbjct: 125 ESIDEYIGTGGYEALGRVLTEMSPDDVIETILASGLRGRGGAGFPTGMKWKFASGNRGNV 184 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+ NADE +PG DR ++ +PH ++E IA +AIGA +IYVR E+ E L Sbjct: 185 QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVERL 244 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + GLLG N G+D DI + GAGA++CGEETAL+ S+EG +G+PR +PPF Sbjct: 245 NIAIKQAREYGLLGKNIFDSGFDFDIDLRLGAGAFVCGEETALMTSIEGNRGEPRPRPPF 304 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+ PT +NNVE+ A +P I+ GA W++ G E ++GTK+F+++G +N VE Sbjct: 305 PAVKGLFASPTILNNVETYANIPQIILNGAEWFASMGTEKSKGTKVFAVNGKINNTGLVE 364 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +IE GGI G A GG S C+PA M I DYD L +GS + Sbjct: 365 VPMGTTLRTIIEDIGGGIPNG-KKFKAAQTGGPSGGCIPAEHMDIPI-DYDNLISIGSMM 422 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD T ++ F ESCG+CTPCR GT + +++++ KG ++ Sbjct: 423 GSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRVGTKRLYEMLDKITKGEGTLEDL 482 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 D + E+ I+ +C LG A P+ ++ FR Sbjct: 483 DKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFR 516 >gi|171362775|dbj|BAG15851.1| probable NADH-quinone oxidoreductase [Pseudomonas putida] Length = 459 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/377 (42%), Positives = 224/377 (59%), Gaps = 6/377 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 56 DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH L+EG +I++ A+ A+ +I++RGE+ ++L A++E A+GLLG N G+D Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIEEAKAAGLLGKNILGSGFDF 175 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235 Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+ G WY RE + GTKL SG V P E +T EL E + GG+R G+ Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L PGG+ L + A M G+ ++G+ +GT + +D S +++ + + Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNME 353 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L KG + +I+ L + + GRT CA Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALEKGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413 Query: 397 AAWPIQGLIKNFRPLIE 413 A P+ IK FR E Sbjct: 414 AVEPLGSAIKYFRSEFE 430 >gi|325277474|ref|ZP_08143079.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51] gi|324097390|gb|EGB95631.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51] Length = 453 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 161/377 (42%), Positives = 223/377 (59%), Gaps = 6/377 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 56 DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH L+EG +I++ A+ A+ +I++RGE+ ++L A+DE A+GLLG N G+D Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNILGSGFDF 175 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235 Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+ G WY RE + GTKL SG V P E +T EL E + GG+R G+ Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L PGG+ L + A M G+ ++G+ +GT + +D S +++ + + Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNME 353 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L G + +I+ L + + GRT CA Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALENGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413 Query: 397 AAWPIQGLIKNFRPLIE 413 A P+ IK FR E Sbjct: 414 AVEPLGSAIKYFRSEFE 430 >gi|50083953|ref|YP_045463.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1] gi|49529929|emb|CAG67641.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1] Length = 443 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 158/380 (41%), Positives = 228/380 (60%), Gaps = 7/380 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ VKA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLDVVKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA++ + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 114 HQLIEGMLIAAYTLEATQGYIFIRGEYIEAAQYLNEALEQARAKGYLGDNILGTGWNFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 YVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S L A + MD + + + GS LGT ++V+D + ++ A L F Sbjct: 293 LKAWLPGGASTDFLAAEHID-LPMDSESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G + +I L E+++ + G+T CA A Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALENGEGKMEDIQHLQELTRKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+ G +K FR E ++ + Sbjct: 412 EPLMGALKYFRSEFEAKVAK 431 >gi|146307439|ref|YP_001187904.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina ymp] gi|145575640|gb|ABP85172.1| NADH dehydrogenase subunit F [Pseudomonas mendocina ymp] Length = 448 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 159/380 (41%), Positives = 225/380 (59%), Gaps = 6/380 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ VK SGL+GRGGAGF TG+KW MP S YL+ NADE EP T KDR +M P Sbjct: 59 IVQTVKDSGLKGRGGAGFPTGVKWGLMPTDESLDIRYLLCNADEMEPNTWKDRLLMEQLP 118 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++ A+ A+ +I++RGE++ +L A++E A+GLLG N G+D ++ Sbjct: 119 HLLVEGMLISARALKAYRGYIFLRGEYVEAAHNLNRAIEEAKAAGLLGRNIFGSGFDFEL 178 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP I+ Sbjct: 179 FVHTGAGRYICGEETALINSLEGRRANPRAKPPFPAAVGVWGKPTCVNNVETLCNVPAIV 238 Query: 222 RRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 + G WY RE + GTKL SG V P E I+ EL E+H GG+R G+ Sbjct: 239 QHGVDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGISARELFEEHAGGMRDGY-R 297 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L PGG+ L + A+M G+ ++G+ +GT + +D S +++ + + F Sbjct: 298 LKCWQPGGAGTGFLLPEHL-DALMYAGGIAKVGTRMGTGLALAVDDSINMVSLLRNMEEF 356 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G + +I L + + G+T CA A Sbjct: 357 FARESCGWCTPCRDGLPWSVKILRALERGEGTREDIATLLGLVNFLGPGKTFCAHAPGAV 416 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+ IK FR E + Q Sbjct: 417 EPLGSAIKYFREEFEAGVAQ 436 >gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] Length = 619 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 158/407 (38%), Positives = 241/407 (59%), Gaps = 10/407 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 RI N + ++ ++RG + ++ L+ + +I ++K+SGLRGRGGAGF T MKW Sbjct: 136 RILRNCGLIDPSNIKHYIARGGYSGLNSALKTKPEKVIEQMKSSGLRGRGGAGFPTWMKW 195 Query: 67 SFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 F C D YL+ NADE +PG +R ++ +PH+++EG VIAS+AIG A+I Sbjct: 196 QF----CVDFDSVEKYLICNADEGDPGAFMNRSLLESDPHSVLEGIVIASYAIGVKEAYI 251 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y R E+ E L+ A+ + GLLG N + G+D++I + GAGA++CGEETAL+ S+ Sbjct: 252 YCRAEYPLALERLKQAISQMRDVGLLGKNILETGFDLEIKIKEGAGAFVCGEETALIASI 311 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR +PPFP GL+G PT +NNVE++A V I++ G + FG ++GTK F Sbjct: 312 EGKRGMPRTRPPFPTTAGLWGKPTVINNVETMASVSLIMQTGHEQFKEFGTVESKGTKTF 371 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+ G+V P +E + T E+I GGI N AV GG S CLP + Sbjct: 372 SLVGNVKKPGLIEVPLGTTLREVIYDIGGGIN-NEGNFKAVQIGGPSGGCLPE-EFLDTK 429 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DYD L G+ +G+ ++VMD+++ ++ F ++ESCG+C PCR GT M+ ++ Sbjct: 430 IDYDSLTMAGAIMGSGGLVVMDQNSCMVDVARYFLEFIQNESCGKCVPCRLGTKQMLDIL 489 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +G ++ + DLL E+S+ I ++C LG + PI +K F Sbjct: 490 SDITQGKGKQGDNDLLRELSQGIRDGSLCGLGQTSPNPILTTLKYFE 536 >gi|330958155|gb|EGH58415.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 452 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/386 (41%), Positives = 225/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQTPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAARHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + KG Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIEKGQGQPGDIETLQGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FRP E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRPEFEAGI 433 >gi|71065155|ref|YP_263882.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4] gi|71038140|gb|AAZ18448.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4] Length = 474 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 163/390 (41%), Positives = 233/390 (59%), Gaps = 11/390 (2%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 L + D + +K + ++GRGGAGF G+KWS M P YLV NADE EPGT KDR Sbjct: 71 LNQSPDDTLKTIKEAVVKGRGGAGFPAGIKWSLMAP-PDGGPRYLVCNADEMEPGTFKDR 129 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 +M P LIEG +I+++AIGA +I++RGE+I E L AA++E A+ L+G N L Sbjct: 130 LLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTAAIEELRANNLIGDNI-L 188 Query: 156 GYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G D D+ VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ Sbjct: 189 GSDFSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTVVNNVET 248 Query: 214 IAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 + V I+ G+ WY G GTKLF SG VN P E T E+IE Sbjct: 249 LHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGLWELPFGYTAREIIEDF 308 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 GG++ G L A +PGG+S L A + ++D+D +++ GS +GT ++V+D D+ Sbjct: 309 AGGMQEG-RTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGSRMGTGLLMVVDEEQDM 366 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GR 388 + + L +F++ ESCG CTPCR+G W ++++ + G Q +++ L +++++ G+ Sbjct: 367 VPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQMGDVEKLEGLTRDLWIGK 426 Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 T CA A P+ IK FRP +++I Q Sbjct: 427 TFCAHAPGAMEPLMSAIKYFRPEFDQKITQ 456 >gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 602 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 166/413 (40%), Positives = 246/413 (59%), Gaps = 8/413 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q +I T G+ K++ + ++R + + K L E + +I VK SGLRGRGGA Sbjct: 111 FFSRQVKIATRNVGIIDPKNIDEYIARDGYFALHKALKEMTPEEVIQVVKDSGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y++ NADE +PG DR I+ +PHT+IE IA +AIGA Sbjct: 171 GFPTGLKWEFARKSPGDE-KYMICNADEGDPGAFMDRSILEGDPHTIIEAMTIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176 F+YVR E+ E L A+++ G LG N LG D DI + GAGA++CGEET Sbjct: 230 TKGFVYVRAEYPIAIERLTVALNQAREYGFLGENI-LGTDFSFDIEIRIGAGAFVCGEET 288 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+GQPR+KPPFPA GL+G P+ +NNVE++A VP I+ GASW+ +G E + Sbjct: 289 ALMHSIEGKRGQPRVKPPFPAQKGLWGKPSNINNVETLACVPPIIYNGASWFRQWGTEKS 348 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+F+++G V VE M IT ELI + GG G + AV GG S +P Sbjct: 349 PGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPE- 406 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ L+++G+ +G+ +IV+D ++ F ESCG+CTPCREGT Sbjct: 407 EYFDTPVDYESLQKLGAIVGSGGLIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTK 466 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M +++++ KG + +I++L + I+ ++C LG A P+ ++ ++ Sbjct: 467 KMYEILDKITKGEGTEEDIEILENLGNVIKDSSLCGLGQTAPNPVLSTLRYYK 519 >gi|70731260|ref|YP_261001.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf-5] gi|68345559|gb|AAY93165.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens Pf-5] Length = 451 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 163/381 (42%), Positives = 226/381 (59%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I+ VK +GL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 55 QDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLME 114 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH LIEG +I++ A+ + +I++RGE+ + L+ AV+E A+GLLG N G+D Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLRRAVEEAKAAGLLGKNILGSGFD 174 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234 Query: 219 TILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G WY RE + GTKL SG V P E +T EL E + GG+R G Sbjct: 235 AIIGDGVEWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDG 294 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + L PGG+ L + A M G+ ++G+ +GT + +D S +++ + + Sbjct: 295 F-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNM 352 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L KG Q+ +I+ L + + G+T CA Sbjct: 353 EQFFARESCGFCTPCRDGLPWSVKLLMALEKGQGQQGDIETLLGLVGFLGPGKTFCAHAP 412 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+ IK FRP E I Sbjct: 413 GAVEPLGSAIKYFRPEFEAGI 433 >gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] Length = 906 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 165/408 (40%), Positives = 243/408 (59%), Gaps = 8/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + D ++ G + + K L +++EV SGLRGRGGAGF TG KW+F D Sbjct: 432 EDIDDYLASGGYGGLAKALTAMTPAQVVDEVTKSGLRGRGGAGFLTGRKWAFT-AAAPDT 490 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P Y+V NADE +PG DR I+ +PH ++E IA +AIGA +IYVR E+ L Sbjct: 491 PKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGARQGYIYVRAEYPVAVHRL 550 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + +GLLG + G+ DI + GAGA++CGEETALL S+ GK+G+PR +PP+ Sbjct: 551 EVAIAQARQAGLLGEDILGTGFSFDIDLRLGAGAFVCGEETALLHSVSGKRGEPRARPPY 610 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE+ A +P I+ GA+WY+ G E ++GTK+FS++G +N +E Sbjct: 611 PALSGLWGKPTLLNNVETYANIPQIIVNGAAWYAAMGTERSKGTKIFSLAGKINNTGLIE 670 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +I GGI GG AV GG S CLPA + I DYD L +GS + Sbjct: 671 VPMGTTLRTIIYDIGGGIPGG-KAFKAVQTGGPSGGCLPAEYLDTPI-DYDSLIAVGSMM 728 Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 G+ +IVMD S D + I R + F + ESCG+CTPCR GT ++ ++ + +G + ++ Sbjct: 729 GSGGLIVMDES-DCMVDIARFYLEFTQDESCGKCTPCRIGTRRLLEIITGITEGKGEPKD 787 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++ L E+ ++I ++C LG A + ++ FR E I+ + RC Sbjct: 788 LERLEELGRDIREASLCGLGQTAPNLVLSTLRYFRHEYEAHIN-HKRC 834 >gi|288817441|ref|YP_003431788.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6] gi|288786840|dbj|BAI68587.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6] gi|308751048|gb|ADO44531.1| NADH dehydrogenase (quinone) [Hydrogenobacter thermophilus TK-6] Length = 423 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 164/390 (42%), Positives = 234/390 (60%), Gaps = 11/390 (2%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + + + G + ++K + + I++ V S LRGRGGAGF TG KW F + + P Y Sbjct: 31 IEEYLKDGGYQALEKAINMSPEEIVDWVDKSQLRGRGGAGFPTGKKWKFA--IQNPAPRY 88 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L+ NADESEPGT KDR ++ +PH LIEG +I+++A+GA+ AFIY+RGE+ L+ A Sbjct: 89 LICNADESEPGTFKDRVLLERDPHLLIEGMIISAYALGANQAFIYIRGEYPAAYYILKDA 148 Query: 140 VDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++E G LG + G+D++I V GAGAYICGEE+AL+ESLEGK+G PR KPPFP Sbjct: 149 IEEAKKKGFLGKDILGSGFDLEIYVAKGAGAYICGEESALIESLEGKRGFPRTKPPFPVQ 208 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNNVE++ +P I++ G Y G + G KLF +SG V P E M Sbjct: 209 YGLFGRPTVVNNVETLCNIPFIIKLGWEDYRYIGPSDYPGPKLFPVSGKVKKPGVYELPM 268 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 + T E++ K+ GG + AV G ++ C A ++ MDY L G G GT Sbjct: 269 NTTLREVVYKYAGGTINN-KKVKAVFSG--ALDCFSADELDTP-MDYSPL---GFG-GTG 320 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 VIV+ I++ +++ FY HESCGQCTPCR GT ++E+++KG A +R+ + Sbjct: 321 TVIVLTEEDSIVEMCLKVAEFYAHESCGQCTPCRVGTYEQANLLEKIMKGTATERDWEGF 380 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V+ I+ +IC LG A I+ +K F Sbjct: 381 DFVNSYIQPTSICGLGAVAGRLIRQTMKKF 410 >gi|222054365|ref|YP_002536727.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221563654|gb|ACM19626.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 420 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 162/387 (41%), Positives = 232/387 (59%), Gaps = 7/387 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D + V SGLRGRGGAGF TG KWSF+P+ P +L+ N DE EPGT KDR ++ Sbjct: 39 DDVQQMVVDSGLRGRGGAGFPTGKKWSFVPRNLPG-PRWLICNCDEMEPGTYKDRVLLEA 97 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 P++LIEG ++A +AIG H AFI++R + +L+ + E + +G N G+ Sbjct: 98 NPYSLIEGILLACYAIGVHHAFIFIRRGYETAAANLRHGIAEADKAEFIGDNIMGSGFSC 157 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I VH AG YICGEETAL+ +LEGK+ PR KPPFPA GL+G PT VNNVE+++ +P Sbjct: 158 AIDVHVSAGRYICGEETALMNALEGKRANPRSKPPFPAVKGLWGGPTVVNNVETLSNIPA 217 Query: 220 ILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ +G++W+ G + GTKLF ISGHV VE M +T E+I+ CGG+ G Sbjct: 218 IVAKGSAWFKGLAKVPEAAGTKLFCISGHVRNTVCVELPMGMTLGEIIDGPCGGMLPG-R 276 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 A IPGG+S P A MD+D + + GS LGT ++V D +T ++ L Sbjct: 277 KFKACIPGGASTPFFTADHF-AVPMDFDAVAKAGSRLGTGGIVVFDENTCMVGVTLNLIR 335 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ ESCG CTPCREG ++ V+ R+ +G ++ ++++L E + + CAL A Sbjct: 336 FFARESCGWCTPCREGLPFVHEVLTRMEQGRGREEDLEILSEHVHYLN-YSFCALAPGAM 394 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425 P++GL++ F+ I E I + + C F+ Sbjct: 395 GPVEGLLRLFKDEIREHIRK-NGCPFK 420 >gi|117618370|ref|YP_856314.1| NADH dehydrogenase I subunit F [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559777|gb|ABK36725.1| NADH-quinone oxidoreductase, f subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 455 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 165/399 (41%), Positives = 235/399 (58%), Gaps = 7/399 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ +D K L + D I+ VK +GL+GRGGAGFSTG+KW MPK S Sbjct: 34 LDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFSTGVKWGLMPKDESMNIR 93 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ +L+ Sbjct: 94 YLLCNADEMEPNTYKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAANLRR 153 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 154 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 213 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVE 255 G++G PT VNNVE++ VP I+ G +WY G + GTKL SG VN P E Sbjct: 214 VSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNPGLWE 273 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT EL E + GG++ G+ L A PGG+ L + A M G+ ++G+ + Sbjct: 274 LPFGITARELFENYAGGMKPGY-RLKAWQPGGAGTGFLLPEHLD-AQMYAGGIGKVGTRM 331 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G Q ++ Sbjct: 332 GTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDL 391 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 L ++ + G+T CA A P+ +K FR E Sbjct: 392 ATLEQLVSFLGPGKTFCAHAPGAIEPLGSAMKYFRSEFE 430 >gi|93005407|ref|YP_579844.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter cryohalolentis K5] gi|92393085|gb|ABE74360.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter cryohalolentis K5] Length = 474 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 163/390 (41%), Positives = 233/390 (59%), Gaps = 11/390 (2%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 L + D +N +K + ++GRGGAGF G+KWS M P YLV NADE EPGT KDR Sbjct: 71 LNQSPDDTLNTIKEAVVKGRGGAGFPAGIKWSLMAP-PDGGPRYLVCNADEMEPGTFKDR 129 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 +M P LIEG +I+++AIGA +I++RGE+I E L AA++E A+ L+G N L Sbjct: 130 LLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTAAIEELKANNLVGDNI-L 188 Query: 156 GYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G D D+ VH GAG YICGEETAL+ LEG++ PR KPPFP G +G PT VNNVE+ Sbjct: 189 GSDFSFDLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQVAGAWGRPTVVNNVET 248 Query: 214 IAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 + V I+ G+ WY G GTKLF SG VN P E T E+IE Sbjct: 249 LHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGLWELPFGYTAREIIEDF 308 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 GG++ G L A +PGG+S L A + ++D+D +++ GS +GT ++V+D D+ Sbjct: 309 AGGMQEG-RTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGSRMGTGLLMVVDEEQDM 366 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GR 388 + + L +F++ ESCG CTPCR+G W ++++ + G Q +++ L +++++ G+ Sbjct: 367 VPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQIGDVEKLEGLTRDLWIGK 426 Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 T CA A P+ IK FRP +++I Q Sbjct: 427 TFCAHAPGAMEPLMSAIKYFRPEFDQKIAQ 456 >gi|332971174|gb|EGK10138.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp. 1501(2011)] Length = 537 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 161/395 (40%), Positives = 234/395 (59%), Gaps = 11/395 (2%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + L K + + +KA+ +RGRGGAGF+ G+KW+FM P YL+ NADE E Sbjct: 79 FEGLKTALSKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFM-TPPDGGPRYLICNADEME 137 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR +M P LIEG +I + AIGA +I++RGE+I E L AA+DEC A+ L Sbjct: 138 PGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYIVAAERLMAAIDECLANNL 197 Query: 149 LGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 +G N LG D ++ VH GAG YICGEETAL+ LEG++ PR KPPFP G +G PT Sbjct: 198 MGDNI-LGSDFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQVSGAWGRPT 256 Query: 207 TVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITF 262 VNNVE+++ +P IL G WY G GTK+F SG VN P E T Sbjct: 257 VVNNVETLSNMPAILINGVEWYQSLPNEKGNTTTPGTKIFGCSGLVNDPGLWELPFGYTA 316 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 E+IE GG++ G L A +PGG+S L + MD+D +++ GS +GT ++V Sbjct: 317 REIIEDFAGGMKQG-KRLKAWLPGGASTDFLTTEHLD-VPMDFDTIQKAGSRMGTGLIMV 374 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 +D S D++ + L +F++ ESCG CTPCR+G W ++++ + G + +++ L ++ Sbjct: 375 VDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGKVGDVEKLEGLT 434 Query: 383 KNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ G+T CA A P+ +K FR + +I Sbjct: 435 RDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469 >gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 616 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 157/368 (42%), Positives = 225/368 (61%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I VK SGLRGRGGAGFSTG KW F K ++R Y+ NADE +PG DR I+ +P Sbjct: 174 VIQTVKTSGLRGRGGAGFSTGTKWEFASKNEAER-KYVCCNADEGDPGAFMDRSILEGDP 232 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161 H++IE IA +AIG++ +IYVR E+ L+ A+ + GLLG N G+D D+ Sbjct: 233 HSVIEAMAIAGYAIGSNQGYIYVRAEYPIAVHRLKIAISQARNYGLLGRNILDSGFDFDV 292 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EGK+G+PR++PPFPA GL+ PT +NNVE++A V IL Sbjct: 293 DIRLGAGAFVCGEETALMASIEGKRGEPRVRPPFPAEKGLWQEPTILNNVETLANVAPIL 352 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA W++ G ++GTK+F+I G + VE M T E++ + GGI GG Sbjct: 353 LNGAEWFADLGTLKSKGTKVFAIGGKIANTGLVEIPMGTTLREIVYEIGGGIPGG-KAFK 411 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA + I DY+ L E+GS +G+ +IVMD T ++ F Sbjct: 412 AAQTGGPSGGCIPAKHIDAPI-DYESLIELGSMMGSGGLIVMDEDTCMVDIAKFFLEFTV 470 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+CTPCR GT M +++++ +G ++++D L ++ I ++CALG A P+ Sbjct: 471 DESCGKCTPCRVGTRMMYDILDKITQGNGTEKDLDELERYARVITKTSLCALGQTAPNPV 530 Query: 402 QGLIKNFR 409 +K FR Sbjct: 531 LSTLKYFR 538 >gi|296388898|ref|ZP_06878373.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAb1] gi|313107679|ref|ZP_07793861.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016] gi|310880363|gb|EFQ38957.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016] Length = 448 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/388 (40%), Positives = 229/388 (59%), Gaps = 6/388 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + + +D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ +L A+DE A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY R + GTKL SG V P E ++ EL E + G Sbjct: 230 LCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L A PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-QLKAWQPGGAGTGFLLPEHLD-AQMFAGGIAKVGTRMGTGLAMAVDDSINMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ L +G Q +++ L ++ + G+T Sbjct: 348 LLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQ 418 CA A P+ +K FR E I + Sbjct: 408 CAHAPGAVEPLGSALKYFRAEFEAGISR 435 >gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] Length = 595 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 223/370 (60%), Gaps = 4/370 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + +I + SGLRGRGGAGF TG+KW F +D+ Y+ NADE +PG DR ++ Sbjct: 151 EEVIQVILDSGLRGRGGAGFPTGLKWKFAAANEADQ-KYVCCNADEGDPGAFMDRSVLEG 209 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH ++E IA +AIGA +IYVR E+ E L A+++ GLLG N + G+D Sbjct: 210 DPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVERLNIAIEQAREYGLLGKNIFETGFDF 269 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+ PT +NNVE++A +P Sbjct: 270 DIDIRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQ 329 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ GA W+S G E ++GTK+F++ G VN VE M T E++E+ GGI G Sbjct: 330 IILNGAEWFSSMGTEKSKGTKVFALGGKVNNTGLVEIPMGTTLREIVEEIGGGIPNG-KK 388 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A GG S C+PA I DYD L +GS +G+ +IVMD ++ F Sbjct: 389 FKAAQTGGPSGGCIPAEHFDVPI-DYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEF 447 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR GT M+ ++E++ G ++D L E++ +++ ++CALG A Sbjct: 448 TVDESCGKCTPCRVGTRRMLEILEKITNGQGTMEDLDKLEELAAHLKTNSLCALGQTAPN 507 Query: 400 PIQGLIKNFR 409 P+ ++ FR Sbjct: 508 PVLSTMRYFR 517 >gi|254282080|ref|ZP_04957048.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B] gi|219678283|gb|EED34632.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B] Length = 417 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 162/376 (43%), Positives = 225/376 (59%), Gaps = 6/376 (1%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTL 105 +K S LRGRGGAGF TGMKWSF+P + H YL+ NADE EPGT KDR +M +PH L Sbjct: 29 IKDSNLRGRGGAGFPTGMKWSFVPMDNATPGHKYLICNADEMEPGTFKDRLLMECDPHQL 88 Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVH 164 IEG +++++ + A A+I++R E+ + L+ A+ C+ G LG N G+ +++ VH Sbjct: 89 IEGMILSAYTLQADIAYIFIRAEYHKAIGLLREAITACHEKGYLGDNILGSGFSLEMHVH 148 Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 AG YICGEETAL+ SLEGK+ PR KPPFP GL+G PT VNNVE++ + IL G Sbjct: 149 VSAGRYICGEETALISSLEGKRANPRAKPPFPQVSGLWGRPTIVNNVETLCNIHHILEFG 208 Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284 A W+ G+ + GTKL+ +SG V P E + + E+IE H GG+ G+ +L + Sbjct: 209 ADWFQALGKGEDAGTKLYGVSGRVKNPGCWELPIGTSIREIIEDHAGGMEDGY-SLRGFL 267 Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344 PGG S L + A MDY + + GS +GT +IV+D T I I L+ F+ ES Sbjct: 268 PGGGSTDFLTPEHLDLA-MDYGTIGKAGSRMGTGTMIVLDDKTCPIGFIHNLTSFFARES 326 Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL-YEVSK-NIEGRTICALGDAAAWPIQ 402 CG CTPCR+G W +V+E L G + +++ L Y++ G T CAL A P+Q Sbjct: 327 CGFCTPCRDGLPWSAQVLESLENGDGRPEDLETLAYQIDYIGAIGNTHCALAPGAMEPVQ 386 Query: 403 GLIKNFRPLIEERIDQ 418 +K FR E I++ Sbjct: 387 SALKYFREDFEAHINE 402 >gi|15597837|ref|NP_251331.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAO1] gi|107102161|ref|ZP_01366079.1| hypothetical protein PaerPA_01003211 [Pseudomonas aeruginosa PACS2] gi|152984500|ref|YP_001347930.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PA7] gi|218891198|ref|YP_002440064.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa LESB58] gi|81540766|sp|Q9I0J7|NUOF_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|9948709|gb|AAG06029.1|AE004692_8 NADH dehydrogenase I chain F [Pseudomonas aeruginosa PAO1] gi|150959658|gb|ABR81683.1| NADH oxidoreductase (quinone), f subunit [Pseudomonas aeruginosa PA7] gi|218771423|emb|CAW27190.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa LESB58] Length = 448 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/388 (40%), Positives = 229/388 (59%), Gaps = 6/388 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + + +D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ +L A+DE A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY R + GTKL SG V P E ++ EL E + G Sbjct: 230 LCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L A PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-QLKAWQPGGAGTGFLLPEHLD-AQMFAGGIAKVGTRMGTGLAMAVDDSINMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ L +G Q +++ L ++ + G+T Sbjct: 348 LLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQ 418 CA A P+ +K FR E I + Sbjct: 408 CAHAPGAVEPLGSALKYFRAEFEAGISR 435 >gi|227326163|ref|ZP_03830187.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 431 Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 149/327 (45%), Positives = 209/327 (63%), Gaps = 5/327 (1%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 +D +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 47 AQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLM 106 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGY 157 EPH L+EG +I++FA+ A+ +I++RGE+I L+ A++E A+GLLG N G+ Sbjct: 107 EQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGF 166 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G++G PT VNNVE++ V Sbjct: 167 DFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNV 226 Query: 218 PTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 P I+ GA+WY G G+ + GTKL SG V P E T E++E + GG+R Sbjct: 227 PAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRD 286 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G L A PGG+ L + MD++ + + GS +GTA + +D +++ Sbjct: 287 GL-KLKAWQPGGAGTDFLTESHL-DLPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRN 344 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVM 362 L F+ ESCG CTPCR+G W ++++ Sbjct: 345 LEEFFSRESCGWCTPCRDGLPWSVKIL 371 >gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative [Geobacter bemidjiensis Bem] Length = 636 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 170/422 (40%), Positives = 250/422 (59%), Gaps = 7/422 (1%) Query: 4 DQDRIFTNL-YGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFS 61 +Q R+ L + KSL D ++ G + + K +L+ + +I EVK + LRGRGGAGF Sbjct: 134 NQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLQMTPEEVIGEVKGAKLRGRGGAGFP 193 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G KW F D+ Y+VVN DE +PG DR +M P T++EG +I ++AIGA Sbjct: 194 SGTKWEFARNAPGDQ-KYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGASEG 252 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ ++L A+ + G LG N G+D + VH GAGA+ICGEET+LL+ Sbjct: 253 YIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETSLLQ 312 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+P+ +PPFPA GL+G PT +NNVE+ A +P I+ +GA ++S G E+++GTK Sbjct: 313 SLEGKPGEPKPRPPFPAVRGLWGKPTNINNVETWANIPVIINKGADYFSSIGTESSKGTK 372 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G VN VE M + ++I K GG+ G AV GG S C+P + Sbjct: 373 IFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVPNG-KKFKAVQTGGPSGGCIPE-EYLD 430 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L +MG+ +G+ +IVMD T ++ F ESCG+C PCREG M++ Sbjct: 431 VKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQMLK 490 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM + +G ++ +I+LL ++ +G +CALG A P+ +K FR E I + Sbjct: 491 VMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIKE-K 549 Query: 421 RC 422 RC Sbjct: 550 RC 551 >gi|304312244|ref|YP_003811842.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] gi|301797977|emb|CBL46199.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] Length = 423 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 162/407 (39%), Positives = 227/407 (55%), Gaps = 4/407 (0%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 G+ L D G ++ L +++ VKAS LRGRGGAGF TGMKWSF+P Sbjct: 12 GMNPPRLVDYQQSGGYEGFRNALRMKPAEVVDLVKASNLRGRGGAGFPTGMKWSFVPPGE 71 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + Y++ NADE EPGT KDR ++ +PH +EG +IA+ A+ A +I++R E+ Sbjct: 72 PGQVRYVIANADEMEPGTYKDRWLLEGDPHQFLEGMMIAAHAVQALTGYIFLRCEYTLAA 131 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 LQ A++E + LLG N G++ + +H AG YICGEETAL+ SLEG++ PR K Sbjct: 132 RRLQEAIEENTRANLLGKNILGSGFNFSLHLHSSAGRYICGEETALINSLEGRRAVPRAK 191 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFP GL+G PT VNNVE+ +P ILR G W+ G G + GTK+F SG V P Sbjct: 192 PPFPQVSGLWGKPTVVNNVETFCNLPHILRHGPEWFIGLGLVKDAGTKIFGASGRVKTPG 251 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E M E+ EK+ GG++ G+ +PGG S L Q M+YD + + G Sbjct: 252 AWELPMGTPIREIFEKYAGGMQDGY-RFRGFLPGGGSTDFL-VEQHLDLPMEYDVIGKAG 309 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +GT +IV+D T + + L F+ ESCG CTPCR+G ++ + +G Q Sbjct: 310 SRMGTGQLIVLDDRTCPVAMVLNLVRFFAQESCGWCTPCRDGLPHAGHILMEIEQGRGQA 369 Query: 373 REIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+++ L ++ + G T CAL A P+Q +K FR E I Q Sbjct: 370 RDLEKLEGFTRFLAPGNTYCALAPGAVEPLQSALKYFREDFERHIQQ 416 >gi|302038847|ref|YP_003799169.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira defluvii] gi|300606911|emb|CBK43244.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira defluvii] Length = 425 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 241/387 (62%), Gaps = 10/387 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRH 100 I+ E+K +GLRGRGGAGF TG KW KV + R Y V NA E EPGT KDR +++H Sbjct: 35 IVGEIKKAGLRGRGGAGFPTGTKWD---KVLNHRVQERYFVCNAGEHEPGTFKDRHLLKH 91 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH LIEGC+IAS + A ++IYV E+ E +L+ A+ + GLLG N G D+ Sbjct: 92 IPHQLIEGCLIASRTVNAKASYIYVNHEYAEEEANLRKAITQARERGLLGKNILGTGVDL 151 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVP 218 D+ V+ G G+Y+ GEETA+LES++G+ PR KPPF P + GLYG PT VNNVE++ +P Sbjct: 152 DLEVYSGHGSYVAGEETAMLESMQGRPAMPRQKPPFYPTDFGLYGKPTLVNNVETLCNIP 211 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL+ GA+W++ G E GT LFS+SG VN P E M +T +LIE GG+ G Sbjct: 212 QILKNGAAWFTQVGTEKCPGTMLFSLSGSVNRPGVYEMPMGVTIRDLIETCGGGVPNG-R 270 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 + AV PGG + + A Q+ MD+D LK+ G+GLG+A IV+D +T ++ A + S Sbjct: 271 KIKAVFPGGPAFSMVTADQLD-LPMDFDSLKKAGTGLGSAGTIVIDDATCMVAATLKYSN 329 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+K ESCGQC PCR GT + +M+++ +G ++++D L ++ ++G C L AA Sbjct: 330 FFKGESCGQCPPCRMGTINLATLMDKIERGEGSRKDLDSLLQLCGFVKGTGYCTLITGAA 389 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +Q ++ F+ EE I + RC FQ Sbjct: 390 VLVQSSLRLFQHEFEEHI-RLQRCPFQ 415 >gi|197116576|ref|YP_002137003.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem] gi|197085936|gb|ACH37207.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem] Length = 421 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 226/370 (61%), Gaps = 8/370 (2%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGAGF TG KWSF+P+ P +++ N DE EPGT KDR ++ H P++LIEG Sbjct: 48 SGLRGRGGAGFPTGKKWSFVPRDLPG-PRWIICNCDEMEPGTYKDRVLLEHNPYSLIEGM 106 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167 +A +A+G FI++R + + E+L A+DE G LG LG + +DI +H A Sbjct: 107 TLACYALGVRHGFIFIRKGYEQAAENLARAIDEAKKEGFLGERI-LGSEHSIDIDLHLSA 165 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 G YICGEETAL+ +LEGK+ PR KPPFPA GL+ PT VNNVE++A +P IL RGA+W Sbjct: 166 GRYICGEETALINALEGKRPNPRQKPPFPAVKGLWAGPTVVNNVETLANIPGILARGAAW 225 Query: 228 YSGFG-RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 + G G+KLF +SG V VE + I ++I+ CGG+R G A IPG Sbjct: 226 FKGLAMNPEGAGSKLFCVSGSVKDRACVELPIGIPLGDIIDGPCGGMRLG-KRFKACIPG 284 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 G+S L A ++ MDYD + ++GS LG+ +IV D+ +++A L F+ ESCG Sbjct: 285 GASTQFLTAEHLK-VPMDYDPVAKVGSRLGSGGIIVFDQDHCLVEATLNLITFFARESCG 343 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 CTPCREG ++ ++ R+ G ++ +I +L E K + + CAL A P+ GL++ Sbjct: 344 WCTPCREGLPYVREILTRIETGYGKEDDIAILREHIKYLN-YSFCALAPGAMAPLDGLLR 402 Query: 407 NFRPLIEERI 416 +F + E I Sbjct: 403 HFEDEVREHI 412 >gi|24372603|ref|NP_716645.1| NADH dehydrogenase I subunit F [Shewanella oneidensis MR-1] gi|24346628|gb|AAN54090.1|AE015546_7 NADH dehydrogenase I, F subunit [Shewanella oneidensis MR-1] Length = 461 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 166/402 (41%), Positives = 236/402 (58%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + ++ +D V K L + D I++ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 40 LEEYQTKQGYDAVRKALGQMSPDEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIR 99 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ +L+ Sbjct: 100 YLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAINLRR 159 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 160 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 219 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVE 255 G++G PT VNNVE++ VP I+ G +WY + GTKL SG VN P E Sbjct: 220 VSGVWGKPTCVNNVETLCNVPAIIGNGVAWYHTLALPGSEDHGTKLMGFSGKVNNPGVWE 279 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT EL E + GG+R G+ L A PGG+ L + A M G+ ++G+ + Sbjct: 280 LPFGITARELFEGYAGGMRSGY-RLKAWQPGGAGTGFLLPEHLD-AQMYTAGIGKVGTRM 337 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + +D S ++ + + F+ ESCG CTPCR+G W ++++ L +G Q+ ++ Sbjct: 338 GTGLAMAVDDSISMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRSLERGEGQEGDL 397 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L ++ + G+T CA A P+ IK FR E I Sbjct: 398 ATLEQLCNFLGPGKTFCAHAPGAVEPLASAIKYFRSEFEAGI 439 >gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 636 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 170/422 (40%), Positives = 250/422 (59%), Gaps = 7/422 (1%) Query: 4 DQDRIFTNL-YGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFS 61 +Q R+ L + KSL D ++ G + + K +L+ + +I EVK + LRGRGGAGF Sbjct: 134 NQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLKMTPEQVIGEVKQAKLRGRGGAGFP 193 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G KW F D+ Y+VVN DE +PG DR +M P T++EG +I ++AIGA Sbjct: 194 SGTKWEFARNAPGDQ-KYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGASEG 252 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ ++L A+ + G LG N G+D + VH GAGA+ICGEET+LL+ Sbjct: 253 YIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETSLLQ 312 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+P+ +PPFPA GL+G PT +NNVE+ A +P I+ +GA ++S G E+++GTK Sbjct: 313 SLEGKPGEPKPRPPFPAIKGLWGKPTNINNVETWANIPVIINQGAEYFSSIGTESSKGTK 372 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G VN VE M + ++I K GG+ G AV GG S C+P + Sbjct: 373 IFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVPNG-KKFKAVQTGGPSGGCIPE-EYLD 430 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L +MG+ +G+ +IVMD T ++ F ESCG+C PCREG M++ Sbjct: 431 VKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQMLK 490 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM + +G ++ +I+LL ++ +G +CALG A P+ +K FR E I + Sbjct: 491 VMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIKE-K 549 Query: 421 RC 422 RC Sbjct: 550 RC 551 >gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] Length = 538 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 154/394 (39%), Positives = 236/394 (59%), Gaps = 9/394 (2%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + D ++ G + + K+L E +I EV+ SGLRGRGGAG+ TG+KWS + K ++ Sbjct: 134 IEDYIATGGYAALIKVLTEFSPSEVIQEVQKSGLRGRGGAGYPTGLKWSTVAKAEGEQ-K 192 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 ++V NADE +PG DR I+ +PH ++EG +IA++A+GA+ ++YVR E+ + + Sbjct: 193 FVVCNADEGDPGAFMDRSILESDPHRVLEGMIIAAYAVGANQGYVYVRAEYPLAVKRFRT 252 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + G LG N + + VD V GAGA++CGEETALL+S+EG +G PRL+PP+ Sbjct: 253 AIRQAEKMGFLGQNICGTPFSFKVD--VRLGAGAFVCGEETALLQSVEGNRGMPRLRPPY 310 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT VNNVE+ A +P ILR G W++ G E ++GTK+F+++G V +E Sbjct: 311 PAQSGLFGKPTLVNNVETYANIPAILRNGGEWFAQTGTEKSKGTKVFALTGKVKNTGLIE 370 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT E++ GG+ G AV GG S C+P ++ +DY+ LK +GS + Sbjct: 371 VPMGITLREIVYDIGGGVPDGR-KFKAVQTGGPSGGCIPE-ELLDTPVDYESLKALGSMM 428 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IV+D +D+I F ESCG+C PCR GT + ++ + + A + ++ Sbjct: 429 GSGGMIVIDDRSDMIDVARYFMEFSMEESCGKCVPCRVGTVQLYNLLGKFQRREATEEDL 488 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L E+ + ++C LG AA PI +K FR Sbjct: 489 KTLEELCDLVRSASLCGLGQAAPNPILSTLKYFR 522 >gi|77459829|ref|YP_349336.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf0-1] gi|77383832|gb|ABA75345.1| NADH dehydrogenase subunit F [Pseudomonas fluorescens Pf0-1] Length = 451 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 161/381 (42%), Positives = 225/381 (59%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I+ VK +GL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 55 QDAIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESINIRYLLCNADEMEPNTWKDRMLME 114 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH LIEG +I++ A+ + +I++RGE+ + L AV+E A+GLLG N G+D Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNRAVEEAKAAGLLGKNILGSGFD 174 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234 Query: 219 TILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G WY R+ + GTKL SG V P E +T EL E + GG+R G Sbjct: 235 AIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWELPFGVTGRELFEDYAGGMRDG 294 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + L A PGG+ L + A M G+ ++G+ +GT + +D S +++ + + Sbjct: 295 F-KLKAWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNM 352 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ + +G Q +I+ L + + G+T CA Sbjct: 353 EQFFARESCGFCTPCRDGLPWSVKLLMAIEQGRGQPGDIETLLGLVNFLGPGKTFCAHAP 412 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+ IK FRP E I Sbjct: 413 GAVEPLGSAIKYFRPEFEAGI 433 >gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 604 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 158/424 (37%), Positives = 248/424 (58%), Gaps = 7/424 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAG 59 L Q RI G + +++ + G + + + + E +I EV++SGLRGRGGAG Sbjct: 101 LDSQKRILLKNSGKIDPENIESYLEEGGYQGLLNALKEMTPKDVIEEVQSSGLRGRGGAG 160 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW F ++ +P Y++ NADE +PG DR ++ +PH+L+EG IA +AIGA+ Sbjct: 161 FPTFKKWEFT-RIEERQPKYVICNADEGDPGAFMDRSVLESDPHSLLEGMAIAGYAIGAN 219 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ + L+ A+++ G LG N G+D DI + GAGA++CGEETAL Sbjct: 220 TGYIYIRAEYPLAVKRLEIAIEQAKEKGYLGKNIQDTGFDFDIYIREGAGAFVCGEETAL 279 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G P KPPFPA GL+ P+ +NNVE++A VP + +GA YS G EN++G Sbjct: 280 IASIEGKRGTPTFKPPFPAQKGLWTQPSCINNVETLANVPRVFLQGAEAYSELGTENSKG 339 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V +E M I +++ + GGI AV GG S C+PA + Sbjct: 340 TKVFALAGDVKRGGLIEVPMGIKIKDIVYEVGGGIVED-KGFKAVQIGGPSGGCIPA-KY 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + +DY+ L E+G+ +G+ ++VMD T ++ F ESCG+CT CR GT M Sbjct: 398 QDVSVDYESLNELGAIMGSGGLLVMDEDTCMVDVAKFFLDFTAEESCGKCTFCRIGTHQM 457 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++++ +G + +ID L ++ I ++C LG A P+ +K FR E + + Sbjct: 458 LDILDKITEGRGEMEDIDRLEDLGSKIIKGSLCGLGQTAPNPVLTTLKYFRDEYEAHVKE 517 Query: 419 YHRC 422 +RC Sbjct: 518 -NRC 520 >gi|71734155|ref|YP_275283.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554708|gb|AAZ33919.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323792|gb|EFW79876.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. B076] gi|320327931|gb|EFW83936.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. race 4] Length = 452 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 161/386 (41%), Positives = 225/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + KG Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|289625430|ref|ZP_06458384.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649287|ref|ZP_06480630.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi str. 2250] gi|298487552|ref|ZP_07005594.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157936|gb|EFH99014.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866834|gb|EGH01543.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 452 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 161/386 (41%), Positives = 225/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + KG Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|115523732|ref|YP_780643.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] gi|115517679|gb|ABJ05663.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] Length = 428 Score = 291 bits (746), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 167/397 (42%), Positives = 233/397 (58%), Gaps = 10/397 (2%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK---VCS 74 S +D G +D L + D ++ V+ASGLRGRGGAGF TG KW M K V Sbjct: 18 SFADWQRLGGYDAFRTALNRHSPDALVAIVEASGLRGRGGAGFLTGTKWRLMRKAALVAG 77 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + P YL VN DE EPG+ KDR +M PH L+EG +IA++A+GA I VR + Sbjct: 78 EGPRYLCVNGDEMEPGSFKDRLLMEALPHQLLEGAMIAAYAVGASEVIILVRDAYRTAAA 137 Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+ E ++GLLG N G+ + + VH AG YI GEETAL+ ++EG + PR +P Sbjct: 138 ALNRAIVEIESAGLLGRNILGSGFALKMRVHASAGRYIVGEETALIAAIEGDRPVPRARP 197 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+PA GL+G PTTVNNVE+++ +P I++ GA W+S + GTKL+ +SG V P Sbjct: 198 PYPAQSGLWGRPTTVNNVETLSNLPLIVQHGAEWFSALSHTSEGGTKLYGVSGRVARPQL 257 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 +E M ELIE CGGIR G L A PGG + L ++ MD++ +K+ GS Sbjct: 258 IEAPMGTPARELIEL-CGGIRDG-GKLRAFQPGGGATAFLEQAEL-DLPMDFEHMKKAGS 314 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT AVIV+D ++ + AI R + FY ESCG CTPCR+G W+ +++++L G + Sbjct: 315 SLGTGAVIVLDEASCPVAAIARHARFYARESCGLCTPCRDGLPWVAKLLDQLEAGQGTRE 374 Query: 374 EIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNF 408 IDLL+ GR+ C L A P++ ++ F Sbjct: 375 TIDLLHMHVDLAGPSGRSFCDLNTGALTPVRSGLQRF 411 >gi|257485443|ref|ZP_05639484.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987946|gb|EGH86049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans str. M301315] Length = 452 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAARHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + KG Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|294649464|ref|ZP_06726888.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus ATCC 19194] gi|292824634|gb|EFF83413.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus ATCC 19194] Length = 442 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 225/381 (59%), Gaps = 6/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M + P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEKLP 114 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGTGWNFEM 174 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234 Query: 222 RRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY + + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 235 LRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-T 293 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S L A + MD + + + GS LGT ++V+D + ++ A L F Sbjct: 294 LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G + +I L E++K + G+T CA A Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQHLSELTKKLWIGKTFCAHAPGAM 412 Query: 399 WPIQGLIKNFRPLIEERIDQY 419 P+ G +K FR E +++ + Sbjct: 413 EPLMGALKYFRHEFEAKVNTH 433 >gi|307822805|ref|ZP_07653036.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum SV96] gi|307736409|gb|EFO07255.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum SV96] Length = 423 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 172/414 (41%), Positives = 248/414 (59%), Gaps = 13/414 (3%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGM 64 DR FT +L+D S G + + K L + + + + VK +GLRGRGGAGF TG+ Sbjct: 15 DRAFT--------TLADYESTGGYQGLRKALAELQPKDVQQWVKDAGLRGRGGAGFGTGL 66 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWS +P + YLV NADE EPGT KDR ++ +PH LIEG +IA++AI A A+I+ Sbjct: 67 KWSLVPLDDLSQTRYLVANADEMEPGTFKDRMLLEQDPHQLIEGMIIAAYAIQAQKAYIF 126 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 +RGE+ + L+ A+ E + G LG + ++++I++H GAG YICGEETALL +LE Sbjct: 127 LRGEYHVAKFRLEQALLEAKSKGYLGEHILNSAFNLEIVLHTGAGRYICGEETALLNALE 186 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+ PR KPPFP GL+G PT VNNVE++ VP IL G WY G R ++GTKLF Sbjct: 187 GKRATPRAKPPFPLVSGLWGKPTVVNNVETLCNVPHILHYGVEWYQGLARGVDKGTKLFG 246 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 G V +P E M E+IE+H GG+R G+ L +PGG+S L + +M Sbjct: 247 AGGRVKHPGLWELPMGTPIREIIEQHAGGMRDGY-KLRGFLPGGASTDFLLPEHL-DVVM 304 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D++ + + GS +GT +IV+D T ++ + L F+ ESCG CTPCR+G W + +++ Sbjct: 305 DFEAVAKAGSRMGTGVIIVLDDKTCPVRMVLNLEQFFAQESCGWCTPCRDGLPWTVTLLK 364 Query: 364 RLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ G + ++D L +++ + G T CAL A P+Q +K FR E I Sbjct: 365 DIIAGKGRIEDLDTLAGLTRMLGPGNTFCALAPGAVEPLQSALKYFRADFERYI 418 >gi|148260120|ref|YP_001234247.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5] gi|146401801|gb|ABQ30328.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5] Length = 434 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 167/424 (39%), Positives = 242/424 (57%), Gaps = 14/424 (3%) Query: 6 DRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 DR T+ G Q ++ G + + K + ++ EVK + +RGRGGAGF G Sbjct: 5 DRPLTSYIQPGRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAG 64 Query: 64 MKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 KW P+ + R YLV+NADE EPG+ KDR ++ PH +IEG +I +FA+ A A+ Sbjct: 65 RKWEGAPRGADAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAY 124 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 I+VRGE++ E L AV E A G LG++ G+ + I VH G YICGE +AL + Sbjct: 125 IFVRGEYVLAMERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSA 184 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR-GTK 240 LEGK+ PR +PP GL+G PT VNNVE++ VP+I+ RGA W+ G R GTK Sbjct: 185 LEGKRAVPRTRPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTK 244 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SG VN P E + +E+IE+H GG+R G++ AV+PGG+S + MR Sbjct: 245 LYGVSGRVNRPGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFI----MRE 299 Query: 301 AI---MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 MD+D + ++GS LGTA ++V+D+ + + + F+ ESCG CTPCR+G W Sbjct: 300 NFDVPMDFDSVGKIGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPW 359 Query: 358 MMRVMERLVKGIAQKREIDLL-YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + R++ L G + +I+LL + V GRT C L A P++ +K FR E + Sbjct: 360 VERILTALEAGEGEPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHV 419 Query: 417 DQYH 420 + H Sbjct: 420 SERH 423 >gi|28870533|ref|NP_793152.1| NADH dehydrogenase I, subunit F [Pseudomonas syringae pv. tomato str. DC3000] gi|28853781|gb|AAO56847.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 452 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH LIEG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-TLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|330503267|ref|YP_004380136.1| NADH-quinone oxidoreductase subunit F [Pseudomonas mendocina NK-01] gi|328917553|gb|AEB58384.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina NK-01] Length = 448 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 159/380 (41%), Positives = 221/380 (58%), Gaps = 6/380 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ VK SGL+GRGGAGF TG+KW MP S YL+ NADE EP T KDR +M P Sbjct: 59 IVQTVKESGLKGRGGAGFPTGVKWGLMPADESMNIRYLLCNADEMEPNTWKDRMLMEQLP 118 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H L+EG +I++ A+ A+ +I++RGE++ +L A+DE A+GLLG N G+D ++ Sbjct: 119 HLLVEGMLISARALKAYRGYIFLRGEYVDAAANLNRAIDEAKAAGLLGKNIFGSGFDFEL 178 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP I+ Sbjct: 179 FVHTGAGRYICGEETALINSLEGRRANPRAKPPFPAAVGVWGKPTCVNNVETLCNVPAII 238 Query: 222 RRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 +G WY G R + GTKL SG V P E IT EL E + GG+R G+ Sbjct: 239 GQGVDWYKGLARPGSEDHGTKLMGFSGKVKNPGLWELPFGITARELFEDYAGGMRDGY-K 297 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L PGG+ L + A M G+ ++G+ +GT + +D S +++ + + F Sbjct: 298 LKCWQPGGAGTGFLLPEHLE-AQMYAGGIGKVGTRMGTGLALAVDDSINMVSLLRNMEEF 356 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L + +I L + + G+T CA A Sbjct: 357 FARESCGWCTPCRDGLPWSVKILRALERKQGTAEDIQTLLGLVNFLGPGKTFCAHAPGAV 416 Query: 399 WPIQGLIKNFRPLIEERIDQ 418 P+ IK FR E + Q Sbjct: 417 EPLGSAIKYFREEFEAGVAQ 436 >gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 610 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 165/412 (40%), Positives = 249/412 (60%), Gaps = 11/412 (2%) Query: 4 DQDR--IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGF 60 DQD +F NL + SL D ++G ++ + K + + INEVK +G+RGRGGAGF Sbjct: 188 DQDNMVLFANLDRIDPMSLDDYRAKGGYEGLKKAVTSMSQVDAINEVKTAGVRGRGGAGF 247 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KWSF + P Y+V NADE EPGT KDR IM +PH ++EG +A +A+GA Sbjct: 248 PAGLKWSFT-QPSPIIPKYIVCNADEGEPGTIKDRYIMEGDPHRVLEGMALAGYAVGASH 306 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVRGE+ LQ A+D+ +G LG N S + ++ V G GAY+CGEETA Sbjct: 307 GYIYVRGEYYLSMLRLQNAIDQAMQNGCLGKNIFGSDFSFTIE--VQSGGGAYVCGEETA 364 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G PR+KPPFP VG++G P+ VNNVE+++ +P I+ +G WY G E+ Sbjct: 365 LIESIEGKRGNPRVKPPFPGQVGVWGKPSIVNNVETLSSIPMIISKGGEWYKAKGTEDAT 424 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F + GHVN P +E + +T ELI+++ GGIRGG A GG+S + Q Sbjct: 425 GTKIFQVVGHVNQPGVIEADLGMTVRELIDRYGGGIRGG-KKFKACQTGGASFGFITEDQ 483 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + M+Y + + LG+ ++VMD T I+ + + F++HESCG C PCR GT Sbjct: 484 LDTP-MEYKAMGAIEGALGSGTMLVMDEDTCIVDVVKCILYFFQHESCGFCLPCRRGTRI 542 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ ++ G ++ ++D + +V++ + CAL + + I+ I+ +R Sbjct: 543 LYDLICKIADGRGEEADLDKMIKVAQVMADSANCALAMSPIFFIKTTIERYR 594 >gi|326402927|ref|YP_004283008.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] gi|325049788|dbj|BAJ80126.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] Length = 434 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 167/424 (39%), Positives = 242/424 (57%), Gaps = 14/424 (3%) Query: 6 DRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 DR T+ G Q ++ G + + K + ++ EVK + +RGRGGAGF G Sbjct: 5 DRPLTSYIQPGRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAG 64 Query: 64 MKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 KW P+ + R YLV+NADE EPG+ KDR ++ PH +IEG +I +FA+ A A+ Sbjct: 65 RKWEGAPRGADAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAY 124 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 I+VRGE++ E L AV E A G LG++ G+ + I VH G YICGE +AL + Sbjct: 125 IFVRGEYVLAMERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSA 184 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR-GTK 240 LEGK+ PR +PP GL+G PT VNNVE++ VP+I+ RGA W+ G R GTK Sbjct: 185 LEGKRAVPRTRPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTK 244 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SG VN P E + +E+IE+H GG+R G++ AV+PGG+S + MR Sbjct: 245 LYGVSGRVNRPGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFI----MRE 299 Query: 301 AI---MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 MD+D + ++GS LGTA ++V+D+ + + + F+ ESCG CTPCR+G W Sbjct: 300 NFDVPMDFDSVGKIGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPW 359 Query: 358 MMRVMERLVKGIAQKREIDLL-YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + R++ L G + +I+LL + V GRT C L A P++ +K FR E + Sbjct: 360 VERILTALEAGEGEPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHV 419 Query: 417 DQYH 420 + H Sbjct: 420 SERH 423 >gi|330810467|ref|YP_004354929.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|9719442|gb|AAF97802.1|AF281148_6 NADH dehydrogenase I subunit F [Pseudomonas fluorescens] gi|327378575|gb|AEA69925.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 451 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 162/381 (42%), Positives = 223/381 (58%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 55 QDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESINIRYLLCNADEMEPNTWKDRMLME 114 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH LIEG +I++ A+ + +I++RGE+ + L AV+E A+GLLG N G+D Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNRAVEEAKAAGLLGKNILGSGFD 174 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234 Query: 219 TILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G WY R+ + GTKL SG V P E +T EL E + GG+R G Sbjct: 235 AIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWELPFGVTGRELFEDYAGGMRDG 294 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + L PGG+ L + A M G+ ++G+ +GT + +D S +++ + + Sbjct: 295 Y-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNM 352 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L G Q +I+ L + + G+T CA Sbjct: 353 EEFFSRESCGFCTPCRDGLPWSVKLLRALENGEGQAGDIETLLGLVGFLGPGKTFCAHAP 412 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+ IK FRP E I Sbjct: 413 GAVEPLGSAIKYFRPEFEAGI 433 >gi|331017275|gb|EGH97331.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 452 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQAHELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-TLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|254167372|ref|ZP_04874224.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] gi|197623635|gb|EDY36198.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] Length = 404 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/394 (39%), Positives = 240/394 (60%), Gaps = 11/394 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 ++ D +++G + + K LE G+D II EV+ SGL GRGGA F TG+K F+ K S P Sbjct: 9 NVEDYLAQGGFKALRKALEYGQDEIIREVEISGLLGRGGAAFPTGLKMKFVRKEKST-PK 67 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE EPGT KDR +M P+ ++EG +I+ +AI A F Y+R E+ + ++ Sbjct: 68 YIVANADEGEPGTFKDRVLMERNPYQILEGMIISGYAIDAKKGFFYIRYEYKEIAKDIKR 127 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++E G+LG N K +D++++V GAGAY+CGEETAL+ES+EGK+G PR+KPP+ Sbjct: 128 KIEELRRLGILGPNIYGPKFSFDIELVV--GAGAYVCGEETALMESIEGKRGYPRIKPPY 185 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE++A +P ++ G + YS G+E G KLFS+SG V P E Sbjct: 186 PAQYGLWGKPTLINNVETLANIPIVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVYE 245 Query: 256 ESM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 ++ T E+IE GG G + ++ GG + + + + + KE G Sbjct: 246 ANLGDKTIGEMIE-LAGGAEG---KIKGIMLGGGAAGFILNEEHLDLPLCFKDAKERGLF 301 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT +IV + S + + +S F++HESCGQC PCR GT M ++E++V+G +K + Sbjct: 302 LGTGNIIVFNESVGLWDVLLNISKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKED 361 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I+ L ++ ++ ++C LG +A + +KNF Sbjct: 362 IEKLNATARAMKIASLCPLGASAMLAYESAMKNF 395 >gi|195952596|ref|YP_002120886.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1] gi|195932208|gb|ACG56908.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1] Length = 425 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 165/379 (43%), Positives = 233/379 (61%), Gaps = 13/379 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 ++K L + I+ EV S LRGRGGAGF TG KW F + + P YLV NADESEPGT Sbjct: 43 LEKALSMKPEDIVEEVDNSNLRGRGGAGFPTGRKWKFC--LQNKAPRYLVCNADESEPGT 100 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR I+ +PH L+EG +I+++A+G + A+IY+RGE+ L+ A++E G LG Sbjct: 101 FKDRLIIERDPHLLLEGMIISAYALGVNRAYIYIRGEYPAGYYILRNAIEEAKKEGFLGK 160 Query: 152 N-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 N G+D++I+V GAGAYICGEETALL S+EGK+G PRLKPPFP VGL+G PT VNN Sbjct: 161 NILNSGFDLEILVSRGAGAYICGEETALLNSIEGKRGHPRLKPPFPVQVGLWGRPTVVNN 220 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270 VE+++ +P I+ G+ Y G + G KLF +SG V P E M+ T E+I K+ Sbjct: 221 VETLSNIPIIINLGSEGYKEIGPMDYPGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYA 280 Query: 271 GG-IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 GG IR + AV G ++ CL ++ MDY + G G GT VIV+ DI Sbjct: 281 GGTIRN--VPIKAVFSG--ALDCLSVSELDTP-MDYS---QFGFG-GTGTVIVLTEEDDI 331 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 + A ++++ FY+HE+CG CTPCR G +++++ K A + + L V+K I+ + Sbjct: 332 VNACYKIAEFYEHETCGFCTPCRIGCHEQAYLLDKIEKDEATPKTWEGLRFVTKYIQPTS 391 Query: 390 ICALGDAAAWPIQGLIKNF 408 +C LG A+ I+ ++ F Sbjct: 392 VCGLGAVASRLIKQAMEKF 410 >gi|226953548|ref|ZP_03824012.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244] gi|226835726|gb|EEH68109.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244] Length = 442 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 224/381 (58%), Gaps = 6/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M + P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEKLP 114 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGTGWNFEM 174 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234 Query: 222 RRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY + + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 235 LRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-T 293 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S L A + MD + + + GS LGT ++V+D + ++ A L F Sbjct: 294 LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G + +I L E++K + G+T CA A Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQHLSELTKKLWIGKTFCAHAPGAM 412 Query: 399 WPIQGLIKNFRPLIEERIDQY 419 P+ G +K FR E ++ + Sbjct: 413 EPLMGALKYFRHEFEAKVSTH 433 >gi|213970031|ref|ZP_03398163.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato T1] gi|301381386|ref|ZP_07229804.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato Max13] gi|302062157|ref|ZP_07253698.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato K40] gi|302130467|ref|ZP_07256457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925135|gb|EEB58698.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato T1] gi|330875769|gb|EGH09918.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 452 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-TLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|322421845|ref|YP_004201068.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320128232|gb|ADW15792.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 593 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/378 (42%), Positives = 233/378 (61%), Gaps = 10/378 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99 +++EVK SGLRGRGG GF TGMKWSF C+ P YL+ NADE +PG DR I+ Sbjct: 153 VVDEVKKSGLRGRGGGGFPTGMKWSF----CAASPGNHKYLICNADEGDPGAFMDRSILE 208 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYD 158 +P+ +IEG +IA++AIG ++YVR E+ + LQ A+D CY G LG N + G+D Sbjct: 209 GDPYCVIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFD 268 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ + GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V Sbjct: 269 FDMRIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVR 328 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ +GA WY+ G E +GTK+F+++G V + VE ++ ++I + CGGI Sbjct: 329 HIINKGADWYASLGTETTKGTKIFAVTGKVKHTGLVEVPAGMSVRDVIYQVCGGIANN-R 387 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S C+P+ ++ +DYD L + G+ +G+ ++VMD +T ++ Sbjct: 388 KFKAVQAGGPSGGCIPS-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLT 446 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F K ESCG+C PCR G M+ ++ER+ +G + +ID L E+ I+ ++C LG A Sbjct: 447 FTKMESCGKCVPCRIGLKAMLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAP 506 Query: 399 WPIQGLIKNFRPLIEERI 416 PI +K FR E I Sbjct: 507 NPILSTVKYFRHEYEAHI 524 >gi|331010723|gb|EGH90779.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 452 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 161/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAARHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGWWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + KG Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] Length = 602 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 159/394 (40%), Positives = 237/394 (60%), Gaps = 7/394 (1%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + ++R + + K L E + +I VK SGLRGRGGAGF TG+KW F K D Sbjct: 130 SIDEYIARDGYFALHKALKEMTPEQVIEVVKESGLRGRGGAGFPTGLKWEFARKSPGDE- 188 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG DR I+ +PH++IE IA++AIGA F+YVR E+ E L Sbjct: 189 KYMICNADEGDPGAFMDRSILEGDPHSIIEAMTIAAYAIGATKGFVYVRAEYPIAIERLT 248 Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ G LG N LG D DI + GAGA++CGEETAL+ S+EGK+GQPR+KPPF Sbjct: 249 VALNQAREYGFLGENI-LGTDFSFDIEIRIGAGAFVCGEETALMHSIEGKRGQPRVKPPF 307 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G P+ +NNVE++A VP I+ G W+ +G E + GTK+F+++G V VE Sbjct: 308 PAQKGLWGKPSNINNVETLACVPPIIYHGPQWFRQWGTEKSPGTKVFALAGKVKNTGLVE 367 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT ELI + GG G + AV GG S +P + DY+ L+++G+ + Sbjct: 368 VPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPEEYFDTPV-DYESLQQLGAIV 425 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IV+D ++ F ESCG+CTPCREGT M +++++ KG + +I Sbjct: 426 GSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKKMYEILDKITKGEGTEEDI 485 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++L ++ I+ ++C LG A P+ ++ ++ Sbjct: 486 EILENLANVIKDSSLCGLGQTAPNPVLSTLRYYK 519 >gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] Length = 639 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 156/394 (39%), Positives = 236/394 (59%), Gaps = 5/394 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + + G ++ + +L EK + +I + SGLRGRGGAGF TG+KW F +D+ Sbjct: 171 EKIDEYIGTGGYEALGIVLTEKKPEDVIQILLDSGLRGRGGAGFPTGLKWKFAAGNDADQ 230 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+ NADE +PG DR I+ +PH ++E IA +AIGA +IYVR E+ + L Sbjct: 231 -KYVCCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGASQGYIYVRAEYPIAVQRL 289 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+++ GLLG N G+D DI + GAGA++CGEETAL+ S+EG +G+PR +PPF Sbjct: 290 EIAIEQAREYGLLGKNIFDSGFDFDIELRLGAGAFVCGEETALMTSIEGNRGEPRPRPPF 349 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+ PT +NNVE+ A +P I+ G W++ G E ++GTK+F++ G ++ VE Sbjct: 350 PALKGLFQKPTILNNVETYANIPQIIVNGPEWFASMGTEKSKGTKVFALGGKIHNTGLVE 409 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E++E+ GG+ G A GG S C+PA + I DYD L +GS + Sbjct: 410 IPMGTTLREIVEEIGGGVPNG-KKFKAAQTGGPSGGCIPAEHLDIPI-DYDNLLSIGSMM 467 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD T ++ F ESCG+CTPCR GT M+ ++E++ KG A ++ Sbjct: 468 GSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRIGTRRMLEILEKITKGQATMEDL 527 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 D L E+ +++ ++CALG A P+ ++ FR Sbjct: 528 DKLEELCYHLQSNSLCALGQTAPNPVLSTLRYFR 561 >gi|330900630|gb|EGH32049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. japonica str. M301072PT] Length = 423 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 21 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 80 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 81 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 140 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 141 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 200 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 201 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQAPELFEDYAG 260 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 261 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 318 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 319 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 378 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 379 CAHAPGAVEPLGSAIKYFRSEFEAGI 404 >gi|253698812|ref|YP_003020001.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251773662|gb|ACT16243.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 421 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 159/370 (42%), Positives = 226/370 (61%), Gaps = 8/370 (2%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGAGF TG KWSF+P+ P +++ N DE EPGT KDR ++ H P++LIEG Sbjct: 48 SGLRGRGGAGFPTGKKWSFVPRDLPG-PRWIICNCDEMEPGTYKDRVLLEHNPYSLIEGM 106 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167 +A +A+G FI++R + + E+L A+ E G LG LG + +DI +H A Sbjct: 107 TLACYALGVRHGFIFIRKGYEQAAENLARAIAEAKKEGFLGERI-LGSEHSIDIDLHLSA 165 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 G YICGEETAL+ +LEGK+ PR KPPFPA GL+G PT VNNVE++A +P I+ RGA+W Sbjct: 166 GRYICGEETALINALEGKRPNPRQKPPFPAVKGLWGGPTVVNNVETLANIPGIVARGAAW 225 Query: 228 YSGFG-RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 + G G+KLF +SG V VE + I ++I+ CGG+R G A IPG Sbjct: 226 FKGLAINPEGAGSKLFCVSGSVKDRACVELPIGIPLADIIDGPCGGMRLG-KKFKACIPG 284 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 G+S L A ++ MDYD + + GS LG+ +IV D S +++A L F+ ESCG Sbjct: 285 GASTQFLTAEHLK-VPMDYDPVAKAGSRLGSGGIIVFDESHCLVEATLNLITFFARESCG 343 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 CTPCREG ++ ++ R+ G ++ +I +L E + + + CAL A P++GL++ Sbjct: 344 WCTPCREGLPYVKEILTRIETGYGKEDDIAILREHIRYLN-YSFCALAPGAMAPLEGLLR 402 Query: 407 NFRPLIEERI 416 +F + E I Sbjct: 403 HFEDEVREHI 412 >gi|330981367|gb|EGH79470.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 452 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|302185027|ref|ZP_07261700.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae 642] Length = 452 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|119595059|gb|EAW74653.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_b [Homo sapiens] Length = 230 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/209 (65%), Positives = 166/209 (79%), Gaps = 1/209 (0%) Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 M K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGE Sbjct: 1 MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60 Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 F E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G Sbjct: 61 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGG 276 VN+PCTVEE MS+ ELIEKH G R G Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGTDRPG 209 >gi|166362850|ref|YP_001655123.1| bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] gi|166085223|dbj|BAF99930.1| bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] Length = 535 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/394 (37%), Positives = 242/394 (61%), Gaps = 10/394 (2%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + ++ G + ++ K L E ++ E+ SGLRGRGGAG+ TG+KW+ + K + Sbjct: 132 IEEYIAVGGYQSLYKALYEMTPAQVVEEITQSGLRGRGGAGYPTGLKWATVAKQ-PGKQK 190 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE +PG DR ++ +PH ++EG IA++A+GA +IYVR E+ + LQ Sbjct: 191 YVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGADHGYIYVRAEYPLAIDRLQK 250 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ GL+GS S + VDI + GAGA++CGEETAL+ S+EG +G PR +PP+ Sbjct: 251 AINQAKKFGLMGSQVFESTFDFKVDIRI--GAGAFVCGEETALIHSIEGGRGTPRTRPPY 308 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL GCPT +NNVES A + I+R GA+WY+ G +++GTK+F+++G + +E Sbjct: 309 PAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTASSKGTKIFALTGKIRNNGLIE 368 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT E++E+ GG+ G + AV GG S C+PA + + DY+ L ++GS + Sbjct: 369 VPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPANLLDTPV-DYESLAKLGSMM 425 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++VMD +T +++ F + ESCG+C PCR GT M ++ +++ A ++ Sbjct: 426 GSGGMVVMDDTTSMVEVAKFYMEFCREESCGKCIPCRTGTVQMFELLAKIIARKADIHDL 485 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + L + + ++ ++C LG +A PI +K F+ Sbjct: 486 ENLEHLCQMVKETSLCGLGQSAPNPILSTLKYFK 519 >gi|66046430|ref|YP_236271.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae B728a] gi|63257137|gb|AAY38233.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv. syringae B728a] gi|330972911|gb|EGH72977.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aceris str. M302273PT] Length = 452 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|237809384|ref|YP_002893824.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187] gi|237501645|gb|ACQ94238.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187] Length = 444 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 152/362 (41%), Positives = 217/362 (59%), Gaps = 6/362 (1%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWS +P Y++ NADE EPGT KDR +M PH LIEG +I ++A+ A+ Sbjct: 63 FPTGVKWSLVPMDPKFDKKYILCNADEMEPGTYKDRLLMEQLPHQLIEGMLIGAYALQAY 122 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +I++RGE+I + L+ A++E +G LG N G++ ++ VH GAG YICGEETAL Sbjct: 123 RGYIFLRGEYIEAAQRLRQAIEEATKAGFLGKNILGTGFNFELFVHTGAGRYICGEETAL 182 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENN 236 + SLEG++ PR KPPFPA G +G PT VNNVE++ +P+I++ G WY G G+ N+ Sbjct: 183 INSLEGRRANPRAKPPFPALAGAWGKPTCVNNVETLNNIPSIMQNGVDWYKGISAGKSND 242 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTKL SG VN P E T E++E + GG+R G L A PGG+ L Sbjct: 243 TGTKLMGFSGRVNNPGVWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFL-TE 300 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q MD+D + + GS LGTA + +D +++ L F+ ESCG CTPCREG Sbjct: 301 QHLDLPMDFDSIGKAGSRLGTALAMAVDNEINMVSLTLNLEKFFSRESCGWCTPCREGLP 360 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415 W +++++ L KG Q+ +I+ L ++ +++ G+T CA A P+Q IK FR E Sbjct: 361 WSVKILQALEKGEGQRGDIETLEKLCRDLGPGKTFCAHAPGAVEPLQSAIKYFRAEFEAG 420 Query: 416 ID 417 I+ Sbjct: 421 IN 422 >gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment culture clone BF] Length = 595 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 167/411 (40%), Positives = 249/411 (60%), Gaps = 6/411 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q RI N + + + ++R + + K+L E + ++N VK SGLRGRGG Sbjct: 110 FFQNQLRIALRNCGHINPDDVEEYIARDGYRALGKVLAEYKPEDVVNVVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K SD Y++ NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGLKWELTRKSTSDM-KYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E L A+ + GLLG N + G+ DI + GAGA++CGEETA Sbjct: 229 QQGFVYVRAEYAIAVERLTTAIKQAREKGLLGKNLFESGFSFDIDLRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE++A +P I+ GA W++GFG E ++ Sbjct: 289 LITSIEGNRGEPRPRPPFPAQQGLWGKPTLINNVETLANIPMIILNGADWFAGFGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+I+G + +E M IT ++I GGI G + A GG S C+PA + Sbjct: 349 GTKVFAIAGKIGNTGLIEVPMGITLRDIIYNIGGGIPDGRE-FKAAQTGGPSGGCIPA-K 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L E+GS +G+ +I+MD ST ++ F ESCG+CTPCR GT Sbjct: 407 LIDTPIDYDSLLEIGSMMGSGGLIIMDDSTCMVDIAKFYLEFTCDESCGKCTPCRVGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 M+ ++ER+ +G ++ +IDLL E+ I+ ++C LG +A P+ ++ F Sbjct: 467 MLEILERITEGKGREEDIDLLQELGHGIKETSLCGLGQSAPNPVLSTLRYF 517 >gi|330830049|ref|YP_004393001.1| NADH dehydrogenase I subunit F [Aeromonas veronii B565] gi|328805185|gb|AEB50384.1| NADH dehydrogenase I, F subunit [Aeromonas veronii B565] Length = 461 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 161/380 (42%), Positives = 225/380 (59%), Gaps = 6/380 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I++ VK +GL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 62 DEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRLLMEQ 121 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH LIEG +I++ A+ A+ +I++RGE++ L+ AV+E A+GLLG N G+D Sbjct: 122 LPHLLIEGMIISARALKAYRGYIFLRGEYVDAAIHLRRAVEEAKAAGLLGKNILGSGFDF 181 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 182 ELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVSGVWGKPTCVNNVETLCNVPA 241 Query: 220 ILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+ G +WY G + GTKL SG VN P E IT EL E + GG++ G+ Sbjct: 242 IIGNGVAWYHGLALPGSEDHGTKLMGFSGKVNNPGVWELPFGITARELFENYAGGMKSGY 301 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L A PGG+ L + A M G+ ++G+ +GT + +D S ++ + + Sbjct: 302 -RLKAWQPGGAGTGFLLPEHLD-AQMYTAGIGKVGTRMGTGLAMAVDDSISMVSLLRNME 359 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L +G Q ++ L ++ + G+T CA Sbjct: 360 EFFARESCGWCTPCRDGLPWSVKLLRALERGEGQSGDLATLEQLCGFLGPGKTFCAHAPG 419 Query: 397 AAWPIQGLIKNFRPLIEERI 416 A P+ IK FR E I Sbjct: 420 AVEPLASAIKYFRSEFEAGI 439 >gi|253702590|ref|YP_003023779.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251777440|gb|ACT20021.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 593 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 161/378 (42%), Positives = 232/378 (61%), Gaps = 10/378 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99 +I+EVK SGLRGRGG GF TGMKWSF C+ P YL+ NADE +PG DR I+ Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSF----CAASPGNHKYLICNADEGDPGAFMDRSILE 208 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYD 158 +P+ +IEG +IA++AIG ++YVR E+ + LQ A+D CY G LG N + G+D Sbjct: 209 GDPYCIIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDVCYEKGYLGKNIQGWGFD 268 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ + GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V Sbjct: 269 FDMRIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVR 328 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ G+ WY+ G + +GTK+F+++G V + VE ++ ++I K CGGI Sbjct: 329 HIINNGSEWYAALGTDTTKGTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANN-R 387 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S C+PA ++ +DYD L + G+ +G+ ++VMD +T ++ Sbjct: 388 KFKAVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLS 446 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F K ESCG+C PCR G M+ ++ER+ +G + +ID L E+ I+ ++C LG A Sbjct: 447 FTKMESCGKCVPCRIGLKAMLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAP 506 Query: 399 WPIQGLIKNFRPLIEERI 416 PI +K FR E I Sbjct: 507 NPILSTVKYFRNEYEAHI 524 >gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 572 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 236/393 (60%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + + R + + ++L R+ ++ E+K SGLRGRGGAGF TG+KW F + D P Sbjct: 155 SIEEYIGRDGYTALARVLNGMTREQVVEEIKKSGLRGRGGAGFPTGLKWQFTLQA-EDEP 213 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V N DE +PG DR ++ +PH+++EG I +A+GA + Y+R E+ ++ Sbjct: 214 KYVVCNGDEGDPGAFMDRSVLEGDPHSVLEGMAIGGYAVGASKGYAYIRAEYPLAIKNFG 273 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA+ GLLG++ G+ D+ + GAGA++CGEETALL S+ GK+G+PR +PPFP Sbjct: 274 AAIKSAREMGLLGTDILDSGFSFDVEIRVGAGAFVCGEETALLHSIAGKRGEPRPRPPFP 333 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNVE+ A + I+ RG WY+G G E ++GTK+F+++G + VE Sbjct: 334 AQCGLFDKPTVINNVETWANIAPIILRGGDWYAGIGTEKSKGTKVFALAGKIVNTGLVEV 393 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + T E++ GG++ G +L A+ GG S +PA + I DY+ L + S +G Sbjct: 394 PLGTTLREVVYDIGGGMKNG-KSLKAIQSGGPSGGAIPAEYIDTPI-DYEALAALDSIMG 451 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + +IV+D + ++ F + ESCG+CTPCR GT M+ ++ RL +G A K +++ Sbjct: 452 SGGMIVLDEDSCMVDVARFFMDFVQDESCGKCTPCRIGTRRMLEILTRLTQGRATKEDVE 511 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 LL E++ ++ +C LG A P+ +++R Sbjct: 512 LLIELANVVKKTALCGLGQTAGNPVLSTTRHYR 544 >gi|222053575|ref|YP_002535937.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562864|gb|ACM18836.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 593 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 162/381 (42%), Positives = 234/381 (61%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+EVK SGLRGRGG GF TGMKWSF D+ YL+ NADE +PG DR ++ +P Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSFCAASPGDK-KYLICNADEGDPGAFMDRSVLEGDP 211 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDI 161 +IEG ++A++AIG + ++YVR E+ + LQ A+D CY G LG N + G+D D+ Sbjct: 212 FCIIEGMMVAAYAIGCYYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDM 271 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ Sbjct: 272 RIKMGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHII 331 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +GA WY+ G + +GTK+F+++G V + VE ++ ++I CGGI Sbjct: 332 NKGADWYASLGTDTTKGTKIFAVTGKVKHTGLVEVPAGMSVRQVIYDVCGGIANN-RKFK 390 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA ++ +DYD L + G+ +G+ ++VMD +T ++ F + Sbjct: 391 AVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTR 449 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR G M+ V+ER+ +G Q +ID L E+ I+ ++C LG A PI Sbjct: 450 MESCGKCVPCRIGLKAMLDVLERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPI 509 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 IK FR E I+ RC Sbjct: 510 LSTIKYFRHEYEAHIND-KRC 529 >gi|145298719|ref|YP_001141560.1| NADH dehydrogenase I subunit F [Aeromonas salmonicida subsp. salmonicida A449] gi|142851491|gb|ABO89812.1| NADH dehydrogenase I, F subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 461 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 165/402 (41%), Positives = 234/402 (58%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ +D K L + D I+ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 40 LDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIR 99 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ L+ Sbjct: 100 YLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAIHLRR 159 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 160 AVIEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 219 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVE 255 G++G PT VNNVE++ VP I+ G +WY G + GTKL SG VN P E Sbjct: 220 VSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNPGVWE 279 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT EL E + GG++ G+ L A PGG+ L + A M G+ ++G+ + Sbjct: 280 LPFGITARELFEHYAGGMKPGY-RLKAWQPGGAGTGFLLPEHLD-AQMYTAGIGKVGTRM 337 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G Q+ ++ Sbjct: 338 GTGLAMAVDDSVNMVGLLRNMEEFFARESCGWCTPCRDGLPWNVKLLRALERGEGQQGDL 397 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L ++ + G+T CA A P+ +K FR E I Sbjct: 398 ATLEQLCNFLGPGKTFCAHAPGAVEPLASALKYFRSEFEAGI 439 >gi|148266249|ref|YP_001232955.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4] gi|146399749|gb|ABQ28382.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4] Length = 593 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 235/381 (61%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+EVK SGLRGRGG GF TGMKWSF D+ YL+ NADE +PG DR ++ +P Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSFCAASPGDK-KYLICNADEGDPGAFMDRSVLEGDP 211 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDI 161 +IEG +I+++AIG + ++YVR E+ + LQ A+D CY G LG N + G+D D+ Sbjct: 212 FCIIEGMMISAYAIGCYYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDM 271 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ Sbjct: 272 RIKMGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHII 331 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +GA WY+ G + +GTK+F+++G V + VE + ++ ++I CGGI Sbjct: 332 NKGADWYASLGTDTTKGTKIFAVTGKVKHTGLVEVAAGMSVRQVIYDVCGGIANN-RKFK 390 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA ++ +DYD L + G+ +G+ ++VMD +T ++ F + Sbjct: 391 AVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTR 449 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR G M+ ++ER+ +G Q +ID L E+ I+ ++C LG A PI Sbjct: 450 MESCGKCVPCRIGLKAMLDILERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPI 509 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 +K FR E I+ RC Sbjct: 510 LSTVKYFRHEYEAHIND-KRC 529 >gi|225849102|ref|YP_002729266.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643363|gb|ACN98413.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium azorense Az-Fu1] Length = 429 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 171/393 (43%), Positives = 236/393 (60%), Gaps = 16/393 (4%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + G + + K L K + I+ V+ S LRGRGGAGF TG KW F + + +P Sbjct: 31 IEEYETTGGYSALKKALTKLTPEDIVIMVEESTLRGRGGAGFPTGRKWRFA--LANPKPR 88 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADESEPGT KDR I+ +PH LIEG +I+++A+GA FIY+RGE+ L+ Sbjct: 89 YLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYALGAELGFIYIRGEYPAGYMILED 148 Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E G LG N LG D DI+V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+P Sbjct: 149 AIEEARKKGYLGKNI-LGTDFSFDILVYRGAGAYICGEETALIESLEGKRGHPRLRPPYP 207 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 AN GL+G PT VNNVE+++ +P I+ S+Y G G KLF ISG V P E Sbjct: 208 ANEGLFGRPTVVNNVETLSNIPIIVTY-ESYYMSIGPAGYYGPKLFPISGKVKNPGVYES 266 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +M IT ELI+ GG++ G AV G V + + MDY G G G Sbjct: 267 TMDITLRELID-MAGGMKDG-KKFKAVFAGALGV---YSERDLDTPMDYS---PKGFG-G 317 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T IV+ II A+ + F+ HESCG+CTPCR GT ++ ++++ +G A +++I Sbjct: 318 TGTTIVLAEDDCIIDALIVIGEFFHHESCGKCTPCRVGTYELLNILKKFQEGTATEKDIK 377 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L + +NI +IC LG +A ++ +K FR Sbjct: 378 YLEHLCENIPVGSICGLGYSAPNAVRDALKKFR 410 >gi|90425542|ref|YP_533912.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] gi|90107556|gb|ABD89593.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] Length = 428 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 168/390 (43%), Positives = 232/390 (59%), Gaps = 12/390 (3%) Query: 27 GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVV 82 G +D + L++ D ++ V+ SGLRGRGGAGF TG KW M K D P YL V Sbjct: 26 GGYDALRGALQRHSPDALVTIVEDSGLRGRGGAGFLTGTKWRLMRKAAEAAGDGPRYLCV 85 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N DE EPG+ KDR +M PH LIEG ++A++AIGA I VR + +L A+ E Sbjct: 86 NGDEMEPGSFKDRLLMEALPHQLIEGAMLAAYAIGATEVIILVRDAYRAAAVALTRAITE 145 Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 ++GLLG N G+ + + +H AG YI GEETAL+ ++EG++ PR +PP+PA GL Sbjct: 146 AESAGLLGRNILGSGFGLKMRLHTSAGRYIVGEETALIAAIEGERPVPRHRPPYPAQSGL 205 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 +G PTTVNNVE+++ VP I++ GA W+ G R GTKL+ ISG V P +E M Sbjct: 206 WGRPTTVNNVETLSAVPHIVQNGAEWFQGLSRTAEGGTKLYGISGRVARPQLIEAPMGTP 265 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ELIE GGIR G LLA PGG + L ++ MD+ +K+ GS LGT AVI Sbjct: 266 AGELIEM-AGGIRDG-RKLLAFQPGGGATAFLQEAELD-VPMDFAHVKKAGSSLGTGAVI 322 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY-- 379 V+D + + AI R + FY ESCG CTPCR+G W+ ++++ L G + +IDLL+ Sbjct: 323 VLDDQSCPVAAIGRHARFYARESCGLCTPCRDGLPWVAKLLDALEAGHGKPEDIDLLHMH 382 Query: 380 -EVSKNIEGRTICALGDAAAWPIQGLIKNF 408 E++ GR+ C L A P++ ++ F Sbjct: 383 VELA-GPSGRSFCDLMAGAMTPVKSGLERF 411 >gi|197120282|ref|YP_002140709.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem] gi|197089642|gb|ACH40913.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem] Length = 593 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 160/378 (42%), Positives = 232/378 (61%), Gaps = 10/378 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99 +I+EVK SGLRGRGG GF TGMKWSF C+ P YL+ NADE +PG DR I+ Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSF----CAASPGNHKYLICNADEGDPGAFMDRSILE 208 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYD 158 +P+ +IEG +IA++AIG ++YVR E+ + LQ A+D CY G LG N + G+D Sbjct: 209 GDPYCVIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFD 268 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ + GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V Sbjct: 269 FDMRIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVR 328 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ +G WY+ G + +GTK+F+++G V + VE ++ ++I K CGGI Sbjct: 329 HIINKGFEWYASLGTDTTKGTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANN-R 387 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S C+PA ++ +DYD L + G+ +G+ ++VMD +T ++ Sbjct: 388 KFKAVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLT 446 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F K ESCG+C PCR G M+ ++E++ +G + +ID L E+ I+ ++C LG A Sbjct: 447 FTKMESCGKCVPCRIGLKAMLDILEKITEGRGEMADIDTLLEMGATIKKASLCGLGQTAP 506 Query: 399 WPIQGLIKNFRPLIEERI 416 PI +K FR E I Sbjct: 507 NPILSTVKYFRNEYEAHI 524 >gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA] gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA] gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400] Length = 591 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 168/420 (40%), Positives = 247/420 (58%), Gaps = 12/420 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T + +SL + + ++K + E +I+EVK SGLRGRGG GF TGMKW Sbjct: 115 VMTGCGQIDPESLDAYLEEDGFKAIEKCVKEMTPAAVIDEVKKSGLRGRGGGGFPTGMKW 174 Query: 67 SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 SF C+ P Y++ NADE +PG DR I+ +P+ +IEG +IA++AIG ++ Sbjct: 175 SF----CAATPGKLKYVICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGCTAGYV 230 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ E LQ A+D CY G LG N G+D D+ + GAGA++CGEETAL+ S+ Sbjct: 231 YVRAEYPLAIERLQKALDVCYEKGYLGKNVMGWGFDFDLRIKKGAGAFVCGEETALMASI 290 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ +GA WY+ G + +GTK+F Sbjct: 291 EGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIILKGADWYASLGTDTTKGTKIF 350 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G V + VE ++ E+I CGGI AV GG S C+P+ ++ Sbjct: 351 AVTGKVKHTGLVEVPAGMSVREVIYNVCGGIANN-RKFKAVQAGGPSGGCIPS-EVLDTP 408 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G M+ ++ Sbjct: 409 VDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTRMESCGKCVPCRIGLKAMLDIL 468 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ER+ +G Q +I+ L E+ I+ ++C LG A PI IK FR E I+ RC Sbjct: 469 ERITEGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIKYFREEYEAHIND-RRC 527 >gi|242239964|ref|YP_002988145.1| NADH dehydrogenase I subunit F [Dickeya dadantii Ech703] gi|242132021|gb|ACS86323.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech703] Length = 449 Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 229/381 (60%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ VK +GLRGRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 QDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH LIEG VI ++A+ A+ +I++RGE+I +L+ A++E A+GLLG N G+D Sbjct: 108 QMPHLLIEGMVIGAYALKAYRGYIFLRGEYIEAAANLRRAIEEAKAAGLLGKNILGTGFD 167 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ VP Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAMAGAWGKPTCVNNVETLCNVP 227 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 228 AIVEHGIEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD++ + + GS LGTA + +D +++ L Sbjct: 288 L-KLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRLGTALAMAVDNEINMVSLTRNL 345 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G T CA Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDIETLEQICRYLAPGNTFCAHAP 405 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+Q IK FR E I Sbjct: 406 GAVEPLQSAIKYFRDEFEAGI 426 >gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5] gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5] Length = 597 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 155/394 (39%), Positives = 233/394 (59%), Gaps = 5/394 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + + G ++ + +L EK + +I + SGLRGRGGAGF TG+KW F +D+ Sbjct: 129 EDIEEYIGTGGYEALGTVLTEKKPEDVIQILLDSGLRGRGGAGFPTGLKWKFAAANAADQ 188 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+ NADE +PG DR ++ +PH ++E IA +AIGA +IYVR E+ + L Sbjct: 189 -KYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVKRL 247 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + GLLG N + G+D DI + GAGA++CGEETAL+ S+EG +G+PR +PPF Sbjct: 248 EIAIGQAREYGLLGKNIFESGFDFDIELRLGAGAFVCGEETALMTSIEGNRGEPRPRPPF 307 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+ PT +NNVE+ A +P I+ G W++ G E ++GTK+F++ G +N VE Sbjct: 308 PALKGLFQRPTILNNVETYANIPQIIVNGPEWFASMGTEKSKGTKVFALGGKINNTGLVE 367 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E++E+ GG+ G A GG S C+PA I DYD L +GS + Sbjct: 368 IPMGTTLREIVEEIGGGVPNG-KKFKAAQTGGPSGGCIPAEHFDVPI-DYDNLIAIGSMM 425 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD ++ F ESCG+CTPCR GT M+ ++E++ KG A ++ Sbjct: 426 GSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRVGTRRMLEILEKITKGQATMADL 485 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 D L E+ +++ ++CALG A P+ + FR Sbjct: 486 DKLEELCYHLKSNSLCALGQTAPNPVLSTLHYFR 519 >gi|330954559|gb|EGH54819.1| NADH dehydrogenase I subunit F [Pseudomonas syringae Cit 7] Length = 440 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 223/386 (57%), Gaps = 6/386 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG +G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGGWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY RE + GTKL SG V P E + EL E + G Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L + + G+T Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|251771122|gb|EES51706.1| NADH dehydrogenase, subunit F [Leptospirillum ferrodiazotrophum] Length = 1059 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 159/420 (37%), Positives = 245/420 (58%), Gaps = 11/420 (2%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62 Q++I + G + S+ D ++ + ++K+L + +I V SGLRGRGGAGF T Sbjct: 120 QNKIVSRRCGVIDPSSIDDYLATNGYKALEKVLGGMTPEQVIEVVTISGLRGRGGAGFPT 179 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCA 121 G+KW F + D Y+V NADE +PG DR ++ +PH+++EG IA+FAIG A Sbjct: 180 GLKWKFTLQSQGDE-KYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMTIAAFAIGHAKKG 238 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + L A+ + G LG+N + L +D++ V GAGAY+CGEETAL Sbjct: 239 YIYCRAEYPHAIKLLNRAIGQARERGYLGNNILGTSLSFDIE--VKEGAGAYVCGEETAL 296 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SL G +G P KPPFPA G++G PT +NNVE++A +P IL G WY+ FG E +G Sbjct: 297 LASLMGDRGMPWPKPPFPAQSGVWGKPTVINNVETLANIPHILLGGGEWYASFGTEKTKG 356 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK F+++G + +E + T E++ + GG+ G A GG S C+P G + Sbjct: 357 TKTFALTGKIKRTGLIEVNAGTTLKEIVYEIAGGM-SGTKKFKAAQLGGPSGGCIP-GSL 414 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D++ L G+ +G+ +IV+D + I+ F K ESCG+CTPCR+GT M Sbjct: 415 IETPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKVM 474 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ER+ +G + +++D L +S ++ ++C LG AA P+ I+ FR E+ I + Sbjct: 475 LDMIERISEGRGEMKDLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIKR 534 >gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 597 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 160/421 (38%), Positives = 249/421 (59%), Gaps = 7/421 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFST 62 Q+RI +N + +S+ + ++RG + + + + E + EV + LRGRGGAGF Sbjct: 115 QERIVLSNCGYINPESIDEYIARGGYQGLARAVTEFDPQGVTEEVINANLRGRGGAGFPA 174 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW F + + Y+V NADE +PG DR I+ +PH++IEG IAS+AIGA + Sbjct: 175 GKKWKFASQE-PEPTKYMVCNADEGDPGAFMDRSILEGDPHSVIEGMAIASYAIGAEVGY 233 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 +Y+R E+ L+ A+ + GLLG N G++ + V GAGA++CGE TAL S Sbjct: 234 VYIRAEYPLAVRRLKEAIQQAEELGLLGENILGSGFNFKLKVKEGAGAFVCGESTALTRS 293 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G PR PP GL+G PT +NNVE++A V IL +GA ++ FG E + GTK+ Sbjct: 294 IEGRRGMPRPTPPRSTEKGLWGKPTVLNNVETLACVSFILSKGAEEFTKFGTEQSPGTKV 353 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G VN VE M I+ +++ GGI+ G + + AV GG S CLP ++ + Sbjct: 354 FALTGKVNNTGLVEVPMGISIRDIVFDIGGGIQHG-NKIKAVQIGGPSGGCLPEDKLDLS 412 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + D+D L + G+ +G+ ++VMD T ++ F + ESCG+CTPCREGT M+ + Sbjct: 413 V-DFDTLDDAGAMMGSGGLVVMDEETCVVDVSKFFLKFTQAESCGKCTPCREGTKRMLEI 471 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+ KG + ++IDLL E+ + I ++C LG +A P+ ++ F E I++ R Sbjct: 472 LERITKGQGEPKDIDLLKELGEMIINTSLCGLGKSAPNPVLSTLRYFEDEYREHIEK-GR 530 Query: 422 C 422 C Sbjct: 531 C 531 >gi|15679545|ref|NP_276662.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter thermautotrophicus str. Delta H] gi|2622670|gb|AAB86023.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter thermautotrophicus str. Delta H] Length = 630 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 12/415 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 RI + +++ ++ G + + + LE D +I EVK SGLRGRGGAGF T +KW Sbjct: 135 RILRRCGLIDPENMGHYLATGGYRGLMRALEMEPDEVIEEVKDSGLRGRGGAGFPTWLKW 194 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + S+ YL+ NADE +PG +R ++ +PH L+EG +IAS+A+GA A+IY R Sbjct: 195 SLCRQEASE-VKYLICNADEGDPGAFMNRSLIEGDPHALLEGILIASYAVGAREAYIYCR 253 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E L+ A+ + GLLG + G+D+DI + GAGA++CGEETAL+ S+EGK Sbjct: 254 AEYPLALERLRVAISDLRNLGLLGKDILGSGFDLDIKIKEGAGAFVCGEETALISSIEGK 313 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFP GL+G PT +NNVE++A V I++ GA +++ G +RGTK FS+ Sbjct: 314 RGMPRTRPPFPTTRGLWGKPTVINNVETLAAVSMIMQHGADYFNSLGTPESRGTKTFSLV 373 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +E + T E+I GG+ G L AV GG S CLPA + I DY Sbjct: 374 GDVRRTGLIEVPLGTTLREVIFDIGGGVVDG--ELKAVQIGGPSGGCLPAELIDTGI-DY 430 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L G+ +G+ ++V+ T +++ F + ESCG+C PCR GT M+ ++ + Sbjct: 431 DSLTSAGAIMGSGGLVVLSDRTCMVELARYFLEFTQRESCGKCVPCRVGTRQMLMILNDI 490 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+G + + D+L +V++++ ++C LG + P+ ++ F D+YH Sbjct: 491 VEGSGRPEDPDILRDVAESVRAASLCGLGQTSPNPVLTTLRYFE-------DEYH 538 >gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Geobacter metallireducens GS-15] Length = 569 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 154/385 (40%), Positives = 232/385 (60%), Gaps = 9/385 (2%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D + EV SGLRGRGGAG+ TG+KW+ K +R Y+V N DE +PG DR IM Sbjct: 161 DDVCREVSVSGLRGRGGAGYPTGVKWNLARKANGER-KYVVANGDEGDPGAYMDRSIMES 219 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157 +PH ++EG +A +AIGA FIYVRGE+ L+AA+ +GLLGS S + Sbjct: 220 DPHRILEGMALAGYAIGAEQGFIYVRGEYYLAGRRLEAAIRAAERAGLLGSRVFGSNFNF 279 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 +DI GAGA++CGEET+L+ S+ G++GQPR +PP+PA GL+GCPT +NNVE++A V Sbjct: 280 RIDI--RTGAGAFVCGEETSLMASIMGRRGQPRQRPPYPAQQGLWGCPTLINNVETLATV 337 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 P I+ +G +WY+G G ++GTK+++++G V +E M T E++ GGI GG Sbjct: 338 PAIMGKGGNWYAGIGSAGSKGTKVYALAGQVEIAGLIEVPMGTTLREVVFDIGGGIPGG- 396 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 A GG S C+P+G++ +DY+ ++ +G+ +G+ +I+MD ++ + Sbjct: 397 KRFKAAQSGGPSGGCIPSGELD-TPLDYESMQRVGTIMGSGGLIIMDETSCMPDVASFFL 455 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F + ESCG+C PCR GT M R++ R+ G A ++ L E+ + + ++C LG A Sbjct: 456 DFCRDESCGKCVPCRVGTVEMHRLLRRITGGTATMDDLAKLEELCELVGAASLCGLGMTA 515 Query: 398 AWPIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ FR E I + HRC Sbjct: 516 PNPVLSTLRYFRDEYVEHISR-HRC 539 >gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] Length = 594 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 160/400 (40%), Positives = 244/400 (61%), Gaps = 5/400 (1%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++ D +S + ++K+L E + +I E+K SGLRGRGG GF TG+KW F + ++ Sbjct: 127 NIEDYLSHDGYKALEKVLTEMSPEEVIEEIKESGLRGRGGGGFPTGLKWQFTAQSEGEQ- 185 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE +PG DR I+ +PH++IE IA +A+GA+ ++YVR E+ + ++ Sbjct: 186 KYIVCNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAVGANQGYVYVRAEYPLAVKRME 245 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + +G +G+N + D+ + GAGA++CGEETAL+ S+EG++G+PR KPPFP Sbjct: 246 KAISDARENGFIGNNIFDTNFKFDLEIRVGAGAFVCGEETALMASIEGERGEPRPKPPFP 305 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A +P I+ +GA W++ G E ++GTK+F+++G +N VE Sbjct: 306 AQSGLWGKPTLINNVETYANIPVIILKGAKWFNHIGTEKSKGTKVFAVAGDINTTGLVEV 365 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T E+I CGGI G A GG S C+P + + MDYD L E+GS +G Sbjct: 366 PMGTTLREIIFDICGGIPEG-KKFKAAQTGGPSGGCIPREHLDIS-MDYDSLIEIGSMMG 423 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + +IVMD +T ++ F + ESCG+C PCR GT M+ ++ER+ KG + +I+ Sbjct: 424 SGGLIVMDENTCMVDVARFFLDFTQDESCGKCVPCRIGTKRMLEILERITKGQGEPGDIE 483 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L ++ K I+ +C LG A P+ IK FR E I Sbjct: 484 KLEKLGKYIKENALCGLGQTAPNPVLSTIKYFRDEYEAHI 523 >gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] Length = 596 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 160/413 (38%), Positives = 245/413 (59%), Gaps = 8/413 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q RI N+ + ++ + ++R + + K+L E + +I EVK SGLRGRGGA Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMTPEEVIEEVKKSGLRGRGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K + Y+V NADE +PG DR IM +PH++IEG +I +AIGA Sbjct: 170 GFPTGLKWELGKKAKGEE-KYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176 F+Y+R E+ + L AA+++ GLLG N LG + DI + GAGA++CGEET Sbjct: 229 KKGFVYIRAEYPLAIKRLTAALEQAREYGLLGENI-LGTNFSFDIEIRIGAGAFVCGEET 287 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+ G+ W+S FG E + Sbjct: 288 ALIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGSEWFSKFGTEKS 347 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G +N +E M IT E++ GG G AV GG + C+PA Sbjct: 348 KGTKVFALAGKINMTGLIEVPMGITLREVVYDI-GGGIPGGKKFKAVQIGGPAGGCIPAE 406 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + I DY+ + +G+ +G+ +IVMD ++ F + ESCG+C PCR GT Sbjct: 407 YLDTPI-DYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTK 465 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M+ +++++ KG + ++ L +++ + ++C LG A P+ +K FR Sbjct: 466 RMLEILDKITKGEGTEEDLVELEQLAYTVRNTSLCGLGKGAPNPVLTTLKYFR 518 >gi|229591257|ref|YP_002873376.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens SBW25] gi|312961690|ref|ZP_07776188.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens WH6] gi|229363123|emb|CAY50142.1| NADH dehydrogenase I chain F [Pseudomonas fluorescens SBW25] gi|311283949|gb|EFQ62532.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens WH6] Length = 451 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 224/381 (58%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I+ VK +GL+GRGGAGF TG+KW MPK S YL+ NADE EP T KDR +M Sbjct: 55 QDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESINIRYLLCNADEMEPNTWKDRMLME 114 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH LIEG +I++ A+ + +I++RGE+ + L AV+E A+GLLG N G+D Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNRAVEEAKAAGLLGKNILGSGFD 174 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234 Query: 219 TILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G WY RE + GTKL SG V P E +T EL E + GG+R G Sbjct: 235 AIIADGVDWYKSLAREGSEDMGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDG 294 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + L A PGG+ L + A M G+ ++G+ +GT + +D + +++ + + Sbjct: 295 Y-TLKAWQPGGAGTGFLLPEHLD-AQMYAGGIGKVGTRMGTGLAMAVDNTVNMVSLLRNM 352 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L G ++ +I+ L + + G+T CA Sbjct: 353 EQFFARESCGFCTPCRDGLPWSVKLLMALENGEGREGDIETLLGLVGFLGPGKTFCAHAP 412 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+ IK FR E I Sbjct: 413 GAVEPLGSAIKYFRSEFEAGI 433 >gi|262373371|ref|ZP_06066650.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii SH205] gi|262313396|gb|EEY94481.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii SH205] Length = 441 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 156/381 (40%), Positives = 224/381 (58%), Gaps = 7/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 114 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFEM 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 YVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY + + GTK++ SG V +P E T E+IE H GG+R G Sbjct: 234 LRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-T 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S L A + MD + + + GS LGT ++V+D + ++ A L F Sbjct: 293 LKAWLPGGASTDFLAAEHID-LPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G + +I L E++K + G+T CA A Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALESGEGKMEDIQHLSELTKKLWIGKTFCAHAPGAM 411 Query: 399 WPIQGLIKNFRPLIEERIDQY 419 P+ G +K FR E ++ + Sbjct: 412 EPLMGALKYFRHEFEAKVKTH 432 >gi|188997422|ref|YP_001931673.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] gi|188932489|gb|ACD67119.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] Length = 427 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/393 (43%), Positives = 237/393 (60%), Gaps = 16/393 (4%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + ++ G + + K L + + II V+ S LRGRGGAGF TG KW F + + +P Sbjct: 31 IEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKWRFA--ISNPKPR 88 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADESEPGT KDR I+ +PH LIEG +I+++AIGA FIY+RGE+ + L+ Sbjct: 89 YLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIRGEYPAGAKILEN 148 Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E G LG N LG D DI V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 149 AIKEARERGFLGKNI-LGTDFSFDISVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 207 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 + GL+G PT VNNVE++A +P I+ S+Y G G KLF ISG VN P E Sbjct: 208 VSEGLFGKPTVVNNVETLANIPIIITY-ESYYMNIGPAGYYGPKLFPISGKVNKPGVYEL 266 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +M IT ELI+ GG++ G AV G V + + MDY G G G Sbjct: 267 TMDITLRELIDI-AGGMKDG-KKFKAVFAGALGV---YSERDLDIPMDYS---PKGFG-G 317 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T IV+ II ++ ++ F+ HESCG+CTPCR GT ++ ++++ +GIA ++++ Sbjct: 318 TGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGTYELLNILKKFQEGIATEKDLQ 377 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L + +NI +IC LG +A + ++ F+ Sbjct: 378 YLEHLGRNIPVGSICGLGYSAPNALMDALRKFK 410 >gi|193076538|gb|ABO11196.2| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978] Length = 444 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 157/379 (41%), Positives = 226/379 (59%), Gaps = 8/379 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 55 VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R G Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD + + + GS LGT ++V+D + ++ L F Sbjct: 293 LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHATRCE 411 Query: 399 WP-IQGLIKNFRPLIEERI 416 W + +K+FR E ++ Sbjct: 412 WSRLWVALKHFRSEFEAKV 430 >gi|330889656|gb|EGH22317.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. mori str. 301020] Length = 453 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 161/387 (41%), Positives = 225/387 (58%), Gaps = 7/387 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFD-ELIEKHC 270 + VP I+ G WY RE + GTKL SG V P E + EL E + Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLGELPFGVQAPRELFEDYA 289 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GG+R G+ L PGG+ L + A M G+ ++G+ +GT + +D S +++ Sbjct: 290 GGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMV 347 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRT 389 + + F+ ESCG CTPCR+G W ++++ + KG Q +I+ L + + G+T Sbjct: 348 SLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKT 407 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERI 416 CA A P+ IK FR E I Sbjct: 408 FCAHAPGAVEPLGSAIKYFRSEFEAGI 434 >gi|126640814|ref|YP_001083798.1| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978] Length = 395 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 157/379 (41%), Positives = 226/379 (59%), Gaps = 8/379 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR +M P Sbjct: 6 VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 64 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G++ ++ Sbjct: 65 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 124 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ Sbjct: 125 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 184 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R G Sbjct: 185 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 243 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + MD + + + GS LGT ++V+D + ++ L F Sbjct: 244 LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 302 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398 + ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA Sbjct: 303 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHATRCE 362 Query: 399 WP-IQGLIKNFRPLIEERI 416 W + +K+FR E ++ Sbjct: 363 WSRLWVALKHFRSEFEAKV 381 >gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] Length = 626 Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 224/370 (60%), Gaps = 4/370 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGGAGF TG+KW F K Y+ NADE +PG DR ++ Sbjct: 182 DDVIQVILDSGLRGRGGAGFPTGLKWKFA-KGNQAEQKYVCCNADEGDPGAFMDRSVLEG 240 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH ++E IA +AIGA +IYVR E+ E L+ A+ + G+LG + G+D Sbjct: 241 DPHVVLEAMTIAGYAIGASQGYIYVRAEYPIAIERLEIAIRQAREYGMLGKDIFGSGFDF 300 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P Sbjct: 301 DIDLRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETWANIPQ 360 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ +G W+ G G E ++GTK+F++ G ++ VE M T E++E+ GGI G Sbjct: 361 IILKGPEWFVGMGTEKSKGTKVFALGGKIHNTGLVEIPMGTTLREIVEEIGGGIPNG-KK 419 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A GG S C+PA + I DYD L E+GS +G+ +IVMD +T ++ F Sbjct: 420 FKAAQTGGPSGGCIPAEHLDVPI-DYDNLMEIGSMMGSGGLIVMDENTCMVDIAKFFLEF 478 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR GT M+ +++++ KG A ++D L E+ +++ ++CALG A Sbjct: 479 TVDESCGKCTPCRIGTRRMLELLDKITKGQATMEDLDKLEELCYHLKDNSLCALGQTAPN 538 Query: 400 PIQGLIKNFR 409 P+ ++ FR Sbjct: 539 PVLSTLRYFR 548 >gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis] Length = 846 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 8/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++++ ++ G + + K L + +I + SGLRGRGGAGF TG KW++ V + Sbjct: 371 ENINEYIASGGYFGLAKALTAMKPTEVIETITCSGLRGRGGAGFLTGRKWAYTAAV-KET 429 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V NADE +PG DR I+ +PH ++E IA +AIGA F+YVR E+ L Sbjct: 430 VKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMTIAGYAIGAQQGFVYVRAEYPIAVHRL 489 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+D+ + +GLLG N G+ DI + GAGA++CGEETALL S+ GK+G+PR +PP+ Sbjct: 490 EVAIDQAHQAGLLGQNILGTGFSFDIEIRLGAGAFVCGEETALLNSVSGKRGEPRTRPPY 549 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE+ A +P I+ +GA WY+ G ++GTK+FS++G +N +E Sbjct: 550 PAVSGLWGKPTLLNNVETYANIPQIICKGADWYAAMGTSGSKGTKIFSLAGKINNTGLIE 609 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + +I GGI G AV GG S CLPA + I DYD L ++GS + Sbjct: 610 VPMGTSLRTIIYGIGGGIPKG-KAFKAVQTGGPSGGCLPAEYLDIPI-DYDSLMKIGSMM 667 Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 G+ +IVMD TD + I R + F + ESCG+CTPCR GT ++ ++ R+ +G ++ Sbjct: 668 GSGGLIVMDE-TDCMVDIARFYLEFTQDESCGKCTPCRIGTRRLLEIITRITEGKGTMKD 726 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++LL E+ +I+ ++C LG A P+ +++FR E I + RC Sbjct: 727 LELLEELGHDIKEASLCGLGQTAPNPVLSTLRHFRHEYEAHIKE-KRC 773 >gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] Length = 571 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 155/407 (38%), Positives = 240/407 (58%), Gaps = 6/407 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++ + +++ + + K+L E + +I +K SGLRGRGGAGF TG+KWS +D+ Sbjct: 103 ENIDEYIAQDGYAALGKVLTEMTPEQVIQVIKDSGLRGRGGAGFPTGVKWSLAAGNKADQ 162 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+ NADE +PG DR ++ +PH ++E IA +AIGA +IYVR E+ + L Sbjct: 163 -KYVCCNADEGDPGAFMDRSVLEGDPHCVLEAMAIAGYAIGATKGYIYVRAEYPIAVKRL 221 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + GLLG N G+D DI + GAGA++CGEETAL+ S+EGK+G+PR +PP+ Sbjct: 222 EIAIGQAREYGLLGKNIFDSGFDFDIQLRLGAGAFVCGEETALMTSIEGKRGEPRPRPPY 281 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G P+ +NNVE+ A + I+ GA W++ G E ++GTK+F++ G + + VE Sbjct: 282 PAVKGLFGKPSILNNVETYANIAQIILHGAEWFNSVGTEKSKGTKVFALGGKIKHTGLVE 341 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E++E+ GG+ G A GG S C+PA + I DYD L +GS + Sbjct: 342 IPMGTTLREIVEEIGGGVPDG-KKFKAAQTGGPSGGCIPASLIDTPI-DYDNLIAIGSMM 399 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD +T ++ F ESCG+CTPCR GT ++ ++ ++ G +I Sbjct: 400 GSGGLIVMDETTCMVDIAKFFLEFTVDESCGKCTPCRVGTKRLLEMLNKITSGTGTMEDI 459 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 D + E+ I+ +C LG A P+ ++ FR E + + HRC Sbjct: 460 DKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-HRC 505 >gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] Length = 624 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 169/417 (40%), Positives = 256/417 (61%), Gaps = 6/417 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGF 60 +Q+RI +N + + L D ++ G + + K +LE + + EV SGLRGRGG GF Sbjct: 140 ANQNRIALSNCGNIDPEDLDDYLAHGGYKALSKALLEMSPEEVCKEVTESGLRGRGGGGF 199 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW F + +D+ Y++VN DE +PG DR IM +PH +IEG IA +A GA Sbjct: 200 PTGKKWEFAYREKADQ-KYVIVNGDEGDPGAFMDRSIMEGDPHRVIEGITIAGYATGATK 258 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + L+ A+++ Y GLLG + G+D D+++ GAGA++CGEETAL+ Sbjct: 259 GYIYVRAEYPLAVKRLRKAINDAYDQGLLGEDILGSGFDFDLMIKEGAGAFVCGEETALM 318 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G P KPPFPA GL+G PTT+NNVE++A VP I+ +GA W++ G EN+ GT Sbjct: 319 ASIEGKRGMPNPKPPFPAQSGLWGKPTTINNVETLANVPQIILKGADWFTSLGTENSPGT 378 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K F+I+G V +E M +T EL+ GGI+ + AV GG S CL + Sbjct: 379 KTFAITGDVANTGLIEVPMGMTLRELVYDIGGGIKNN-NKFKAVQIGGPSGGCLTEEHLD 437 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+E+G+ +G+ ++VMD +T +++ F ++ESCG+C CREGT M+ Sbjct: 438 -MPMDFDSLQEVGAMIGSGGLVVMDENTCMVEVARFFMEFTQNESCGKCVLCREGTKQML 496 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ER+V+G ++DLL E++ ++ ++C LG A P+ +K FR E + Sbjct: 497 KILERIVEGKGTMEDLDLLEELALAVKDGSLCGLGKTAPNPVLTTLKYFRDEYEAHV 553 >gi|332295878|ref|YP_004437801.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM 14796] gi|332178981|gb|AEE14670.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM 14796] Length = 537 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 154/413 (37%), Positives = 244/413 (59%), Gaps = 8/413 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58 + Q RI N + + +++ +++G ++++ K L +I +K S LRGRGGA Sbjct: 109 FFSKQTRIVLRNCGFINPEDITEYIAQGGYESLGKALTSMSSADVIKIIKDSLLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K SD Y++ NADE +PG +R ++ +PH+++EG IA +A+GA Sbjct: 169 GFPTGLKWELAKKQTSDI-KYIICNADEGDPGAYMNRSVLEGDPHSVLEGMTIAGYAVGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176 FIY+R E+ + LQ A+ + GLLG N LG + DI + GAGA++CGEET Sbjct: 228 QKGFIYIRAEYPLAVKRLQIAIKQAKEIGLLGKNI-LGTNFSFDIELRIGAGAFVCGEET 286 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S EGK+G+PR KPP+P +GL+G PT +NNVE++A VP I+ +GA+++ G E + Sbjct: 287 ALINSTEGKRGEPRKKPPYPIEIGLFGRPTVINNVETLANVPIIIEKGANFFKQIGTEKS 346 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK FS+ G VN +E + + ++ GGI G A GG S +PA Sbjct: 347 PGTKAFSLVGKVNIAGLIEVPLGTSLRTIVFDIGGGIPEGH-TFKAAQTGGPSGGVIPAN 405 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + MDY+ L ++G+ +G+ +IVMD ++ ++ F ESCG+C PCREGT Sbjct: 406 YID-IPMDYENLPQLGAIMGSGGLIVMDETSCMVDVAKFFLKFTVDESCGKCVPCREGTR 464 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M+ ++E++ +G +++DLL ++ I+ ++C LG A P+ +++FR Sbjct: 465 QMLNILEKITRGGGTMKDLDLLEKLGNVIKSTSLCGLGQTAPNPVLSTLRHFR 517 >gi|218780402|ref|YP_002431720.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218761786|gb|ACL04252.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like) [Desulfatibacillum alkenivorans AK-01] Length = 1044 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 158/421 (37%), Positives = 246/421 (58%), Gaps = 7/421 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62 Q+R L G + S+ ++ G + + ++L + + EV + LRGRGGAGF Sbjct: 134 QERRVLALCGRIDPTSIEHYIAAGGYQALVRVLSGMAPEQVAQEVIDAKLRGRGGAGFPA 193 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F + S P Y++ NADE +PG DR I+ +PH++IEG +I +FA+GA F Sbjct: 194 GLKWKFA-RQSSANPKYIICNADEGDPGAFMDRAILEGDPHSVIEGMIIGAFAMGARYGF 252 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ E L A+ + G+LG N G+ + + GAGA++CGEETAL+ S Sbjct: 253 IYVREEYPIAVEHLNCAIAQAGELGILGENILGTGFSFSLSLKMGAGAFVCGEETALMAS 312 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR +PPFPA G+ G P+ +NNVE+ A VP IL+ GA WY+ G EN++GTK+ Sbjct: 313 IEGKRGMPRARPPFPAQSGVDGKPSNINNVETFANVPLILKNGAGWYAQVGTENSKGTKI 372 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++G VN VE + + E++ GGI G AV GG S C+PA Q Sbjct: 373 FSLAGKVNNTGLVEVPIGTSIREVVFDIGGGIPKGR-KFKAVQMGGPSGGCVPA-QFLNL 430 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DYD L+++G+ +G+ ++VMD + +++ F + ESCG+C+PCR GT ++ + Sbjct: 431 SIDYDTLQKIGAIMGSGGMVVMDENNCMVEIARFFLAFTQSESCGKCSPCRLGTTQLLEI 490 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G + +I+ + E+ + + ++C LG A P ++ F E+ I + +R Sbjct: 491 LTRITTGRGRLEDIETIKEIGRTMTEASLCGLGQNCAKPAISTLQYFLKEYEDHILE-NR 549 Query: 422 C 422 C Sbjct: 550 C 550 >gi|237755575|ref|ZP_04584192.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237692274|gb|EEP61265.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 427 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 171/393 (43%), Positives = 236/393 (60%), Gaps = 16/393 (4%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + ++ G + + K L + + II V+ S LRGRGGAGF TG KW F V + +P Sbjct: 31 IEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKWRFA--VSNSKPR 88 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADESEPGT KDR I+ +PH LIEG +I+++AIGA FIY+RGE+ + L+ Sbjct: 89 YLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIRGEYPAGAKILEN 148 Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E G LG N LG D DI V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 149 AIKEARERGFLGKNI-LGTDFSFDISVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 207 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 + GL+G PT VNNVE++A +P I+ S+Y G G KLF ISG VN P E Sbjct: 208 VSEGLFGKPTVVNNVETLANIPIIVTY-ESYYMNIGPAGYYGPKLFPISGKVNKPGVYEL 266 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +M IT ELI+ GG++ G AV G L + + MDY G G G Sbjct: 267 TMDITLRELIDI-AGGMKDG-KKFKAVFAGALG---LYSERDLDIPMDYS---PKGFG-G 317 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T IV+ II ++ ++ F+ HESCG+CTPCR G+ ++ ++++ +G A ++++ Sbjct: 318 TGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGSYELLNILKKFQEGTATEKDLQ 377 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L + +NI +IC LG +A + +K F+ Sbjct: 378 YLEHLGRNIPVGSICGLGYSAPNALMDALKKFK 410 >gi|119489274|ref|ZP_01622081.1| hydrogenase subunit [Lyngbya sp. PCC 8106] gi|119454748|gb|EAW35893.1| hydrogenase subunit [Lyngbya sp. PCC 8106] Length = 538 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/378 (38%), Positives = 234/378 (61%), Gaps = 9/378 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I E + +++E+ SGLRGRGGAG+ TG+KW+ + K+ + Y++ NADE +PG D Sbjct: 148 IYEMTPEDVVSEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMD 206 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152 R ++ +PH ++EG IA +A+GA +IYVR E+ LQ A+ + G+LG+ Sbjct: 207 RSVLESDPHRILEGMAIAGYAVGATQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQVF 266 Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 S + + VDI V GAGA++CGEETAL+ S++G +G PR +PP+PA GL+G PT +NNV Sbjct: 267 GSPVNFTVDIRV--GAGAFVCGEETALIASIDGNRGVPRPRPPYPAVSGLWGEPTLINNV 324 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++A + I+R+GA W++ G E ++GTK+FS++G + +E M I+ E++E+ G Sbjct: 325 ETLANIAPIIRKGADWFASIGTEKSKGTKIFSLTGKIRNTGLIEVPMGISLREIVEEMGG 384 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+ G + AV GG S C+P + +DY+ L ++GS +G+ ++VMD+ T +I+ Sbjct: 385 GVPDG--EVKAVQTGGPSGGCIPV-HLLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQ 441 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 F + ESCG+C PCR GT M +++ +L+K A +++ L E+ + ++ ++C Sbjct: 442 VAQFYMDFCREESCGKCIPCRAGTVQMYQLLTKLIKKQATAADLEKLKELCEMVKATSLC 501 Query: 392 ALGDAAAWPIQGLIKNFR 409 LG A PI + F Sbjct: 502 GLGQTAPNPIVSTLHYFE 519 >gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus litoralis DSM 5473] Length = 555 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 151/403 (37%), Positives = 239/403 (59%), Gaps = 4/403 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N + + + + ++ G ++ + K L+ + II+ + SGLRGRGGAGF TG+KW Sbjct: 72 VLENSGYINPEDIEEYIAAGGYEALKKALKMEPEEIIDIITKSGLRGRGGAGFPTGLKWK 131 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F + D Y++ NADE +PG DR+++ +PH +IEG +I ++AIGA FIYVR Sbjct: 132 FTRQAKGDE-KYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRA 190 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ + L+ A+ + G LG N G+ DI++ GAGA++CGEETAL+ S+EGK+ Sbjct: 191 EYPLAVKRLRIALQQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALIASIEGKR 250 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR +PP+PA GL+G PT +NNVE+ A VP I+R G Y+ G E ++GTK+F++SG Sbjct: 251 GMPRPRPPYPAQKGLFGKPTNINNVETWANVPWIIRHGPEAYASLGTEKSKGTKVFALSG 310 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + + VE M IT E++ + GG + G + AV GG S C+P ++ +DY+ Sbjct: 311 KIKHGGNVEVPMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIPE-ELFDTPVDYE 368 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + G+ +G+ ++VMD T ++ F ESCG+CT CR GT M +++++ Sbjct: 369 SVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMWEILDKIT 428 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 KG +I L E++ ++ ++C LG A P+ ++ FR Sbjct: 429 KGQGTMEDIKELEELAPMVKAGSLCGLGQTAPNPVLTTLQYFR 471 >gi|271501264|ref|YP_003334289.1| NADH-quinone oxidoreductase subunit F [Dickeya dadantii Ech586] gi|270344819|gb|ACZ77584.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech586] Length = 449 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 164/381 (43%), Positives = 228/381 (59%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ VK +GLRGRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 QDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH L+EG +I ++A+ A+ +I++RGE++ +L+ A+ E +GLLG N G+D Sbjct: 108 QMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAANLRRAIAEATEAGLLGKNIMGTGFD 167 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 228 AIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD++ + + GS LGTA + +D +++ L Sbjct: 288 L-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRLGTALAMAVDNEINMVSLTRNL 345 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G T CA Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+Q IK FR E I Sbjct: 406 GAVEPLQSAIKYFRDEFEAGI 426 >gi|251789018|ref|YP_003003739.1| NADH dehydrogenase I subunit F [Dickeya zeae Ech1591] gi|247537639|gb|ACT06260.1| NADH-quinone oxidoreductase, F subunit [Dickeya zeae Ech1591] Length = 449 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 164/381 (43%), Positives = 228/381 (59%), Gaps = 6/381 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ VK +GLRGRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 QDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 PH L+EG +I ++A+ A+ +I++RGE++ +L+ A+ E +GLLG N G+D Sbjct: 108 QMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAANLRRAIAEATEAGLLGKNIMGTGFD 167 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA+ G +G PT VNNVE++ VP Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227 Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 I+ G WY G G+ + GTKL SG V P E T E++E + GG+R G Sbjct: 228 AIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A PGG+ L + MD++ + + GS LGTA + +D +++ L Sbjct: 288 L-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRLGTALAMAVDNEINMVSLTRNL 345 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G T CA Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 A P+Q IK FR E I Sbjct: 406 GAVEPLQSAIKYFRDEFEAGI 426 >gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] Length = 595 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 221/370 (59%), Gaps = 4/370 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + +I + SGLRGRGGAGF TG+KW F +D+ Y+ NADE +PG DR ++ Sbjct: 151 EEVIQVILDSGLRGRGGAGFPTGLKWKFAAANEADQ-KYVCCNADEGDPGAFMDRSVLEG 209 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH ++E IA +AIGA +IYVR E+ E L+ A+ + GLLG N + G+D Sbjct: 210 DPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVERLKIAIGQAREYGLLGKNIFESGFDF 269 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+ PT +NNVE++A +P Sbjct: 270 DIDIRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQ 329 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ G W+S G E ++GTK+F++ G V VE M T E++E+ GGI G Sbjct: 330 IILNGPEWFSSMGTEKSKGTKVFALGGKVKNTGLVEIPMGTTLREIVEEIGGGIPNG-KK 388 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A GG S C+PA I DYD L +GS +G+ +IVMD T ++ F Sbjct: 389 FKAAQTGGPSGGCIPAEHFDVPI-DYDNLIAIGSMMGSGGLIVMDEDTCMVDIAKFFLEF 447 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+C PCR GT M+ ++E++ G ++D L +++ +++ ++CALG A Sbjct: 448 TVDESCGKCAPCRIGTRRMLEILEKITNGQGTMEDLDKLEDLAAHLKSNSLCALGQTAPN 507 Query: 400 PIQGLIKNFR 409 P+ ++ F+ Sbjct: 508 PVLSTLRYFK 517 >gi|163785517|ref|ZP_02180100.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] gi|159879215|gb|EDP73136.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] Length = 403 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 228/381 (59%), Gaps = 18/381 (4%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + G + + K L K + II+ V+ S LRGRGGAGF TG KW F+ V + +P Sbjct: 34 IEEYETTGGYSALKKALNKFTPEEIIDLVEESTLRGRGGAGFPTGRKWRFV--VSNPKPR 91 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADESEPGT KDR I+ +PH LIEG +I+++AIGA FIY+RGE+ L+ Sbjct: 92 YLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAEKGFIYIRGEYPAGYMILEN 151 Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E Y G LG N LG D D+ V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 152 AINEAYERGYLGKNI-LGSDFSFDLYVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 210 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 VGL+G PT VNNVE+++ +P I+ ++ G G KLF +SG V P E Sbjct: 211 PQVGLFGRPTVVNNVETLSNIPIIITY-EQYFMNIGPAGYYGPKLFPVSGRVKRPGVYES 269 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +M IT ELIE G + AV G V + MDY G G G Sbjct: 270 TMDITLYELIEMAGGAV----GKPKAVFAGALGVYHKNEFDIP---MDYS---PRGFG-G 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T IV++ + II ++ ++ F+ HESCG+CTPCR GT ++++ +G A +++I Sbjct: 319 TGTTIVLNENDCIIDSLIVITNFFHHESCGKCTPCRVGTYEQFNIIKKFQEGTATEKDIQ 378 Query: 377 LLYEVSKNIEGRTICALGDAA 397 LL + KNI +IC LG +A Sbjct: 379 LLEHLGKNIPVGSICGLGYSA 399 >gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum ferrodiazotrophum] Length = 624 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 173/423 (40%), Positives = 250/423 (59%), Gaps = 7/423 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60 L ++ +FT L + + S G + + +I+ K R I+NE+++SGL GRGG F Sbjct: 172 LVNEPVVFTGLKAKETLWIDRYESAGGYAMLREIMAAKDRTRIMNEIESSGLSGRGGGAF 231 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 K + K + +PHY+V NADE EPGT KDR IM +PH+ IEG ++AS+AI A Sbjct: 232 PMAPKLKNVMK--NPKPHYVVANADEGEPGTFKDRYIMERDPHSFIEGMILASYAIDADA 289 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ + L A+DE A G LG N G+D DI ++ G GAYICGE+++LL Sbjct: 290 GYIYLREEYPHSYQILLKALDEARAKGYLGKNILGTGWDYDIRIYRGGGAYICGEDSSLL 349 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G PR KPP +++GL+ PT VNNVE+ A +P IL+ G +WY G E + GT Sbjct: 350 NSLEGKRGTPRNKPPRLSDIGLWKKPTDVNNVETFAAIPRILKEGGAWYKSLGDEKSAGT 409 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SG++ P E + T LIE+ GG+ G AV+P GS+ L QM Sbjct: 410 KLFCLSGNIRRPGIYEVPLGATLRHLIEELGGGVPEG-RKFKAVLPAGSASSMLYPVQMD 468 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A +DY +K G+ LG A++IVMD S ++ + +S FY HESCGQCTPCR+GT + Sbjct: 469 MA-LDYPTVKAAGAFLGAASLIVMDDSVCMVDLAFWMSGFYHHESCGQCTPCRDGTEDIH 527 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V++++V G + ++ + + + + +IC LG +A I++F E I Sbjct: 528 EVLQKIVMGEGELSHLEFIKSLGEYMRTASICGLGTSAPNIPISSIEHFEEEWREHILD- 586 Query: 420 HRC 422 HRC Sbjct: 587 HRC 589 >gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 610 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 151/395 (38%), Positives = 240/395 (60%), Gaps = 9/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + ++R + + K L + +I E+K SGLRGRGGAGF TG+KW + SD Sbjct: 133 SIEEYIARDGYFALHKALTTMTPEDVIKEIKDSGLRGRGGAGFPTGLKWELARQQKSDI- 191 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG DR ++ +PH+++E IA +AIGA F+YVR E+ E L Sbjct: 192 KYMICNADEGDPGAFMDRSVLEGDPHSIVEAMTIAGYAIGAQKGFVYVRAEYPLAIERLG 251 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A++ + G LG N + +D++I + GAGA++CGEETAL+ S+EGK+GQPR+KPP Sbjct: 252 RAIETAHEYGFLGENILGTNFSFDIEIRI--GAGAFVCGEETALMHSIEGKRGQPRVKPP 309 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FP GL+G P+ +NNVE++++VP I+ +GASW+ +G E + GTK+F+++G + V Sbjct: 310 FPVQKGLWGKPSVINNVETLSLVPPIILKGASWFRQYGTEKSPGTKVFALAGKIKNTGLV 369 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M IT EL+ + GG G + AV GG S +P+ + +DY+ L ++G+ Sbjct: 370 EVPMGITLRELLYEIGGGHPQG-KQIKAVQTGGPSGGVIPS-EFFDTPVDYESLGKLGAI 427 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +IV+D ++ F ESCG+CTPCREGT M +++++ KG + Sbjct: 428 MGSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKVMYDLLDKITKGEGTMED 487 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 I+ L +++ I+ ++C LG A P+ ++ +R Sbjct: 488 IEKLERLAQVIKDSSLCGLGQTAPNPVLSTLRYYR 522 >gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 619 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 157/400 (39%), Positives = 243/400 (60%), Gaps = 5/400 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + ++ G ++ ++K+L + +I EVK SGLRGRGG GF TG+KW F K ++ Sbjct: 152 SIEEYIAYGGYEALEKVLSSMSQTQVIEEVKKSGLRGRGGGGFPTGLKWEFAYKSPGEK- 210 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG DR ++ +PH ++EG I +AIGA +IYVR E+ + L+ Sbjct: 211 KYVICNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAIGADEGYIYVRAEYPLAIKRLE 270 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + +GLLG N G++ + + GAGA++CGEETAL+ S+EGK+G PR++PPFP Sbjct: 271 NAIAQAEEAGLLGENILGSGFNFKLRIKAGAGAFVCGEETALINSIEGKRGMPRVRPPFP 330 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT NNVE+ A +P I+R+GA W++G G E ++G+K+F+++G VN E Sbjct: 331 AQSGLWNKPTNNNNVETYANIPGIIRKGADWFAGMGTEKSKGSKVFALTGKVNRTGLAEV 390 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT E+I GGI+ AV GG S C+P + + DYD L +G+ +G Sbjct: 391 PIGITIREIIFDIAGGIQNN-KKFKAVQIGGPSGGCIPEEYLDTPV-DYDSLTALGAMMG 448 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++VMD +T ++ F + ESCG+CTPCREGT M+ ++ R+ G + +ID Sbjct: 449 SGGLVVMDETTCMVDVARFFLNFTQKESCGKCTPCREGTKRMLEILNRICDGKGKPEDID 508 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L +S I+ +C LG +A P+ ++ FR E+ I Sbjct: 509 TLERLSNVIKSTALCGLGQSAPNPVLATLRYFRNEYEDHI 548 >gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] Length = 624 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 229/393 (58%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D M RG + + K+L++G DW++ +K SGLRGRGGAGF TG+KW DR Sbjct: 158 SIDDYMGRGGYLSFIKVLKEGNPDWVVKTIKDSGLRGRGGAGFPTGVKWEITKNSKGDR- 216 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R ++ +PH ++EG +IA++ IGA + Y+R E+ E + Sbjct: 217 KFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIRAEYPVAVEMFR 276 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GL+G N G+ DI + GAGA++CGEETALL S+EGK+G PR +PP+P Sbjct: 277 KAIEDAKRLGLVGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGKRGVPRPRPPYP 336 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NNVE+ A VP I+R GA Y G N+ GTK+FS++G V +E Sbjct: 337 AQVGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVTGPVRLTGIIEV 396 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T +++ CGG+ + AV GG S CL + +DYD LK G+ +G Sbjct: 397 EFGTTLRQIVYDICGGLTDD-NEFKAVQIGGPSGACLSEAFL-DLPLDYDSLKSAGAMVG 454 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + +++ F K ESCG+C PCREG R++ER +G +++ Sbjct: 455 SGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQSYRILERFTQGKGTYEDLE 514 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++ I+ + C LG A PI ++ FR Sbjct: 515 NLEFLAGLIKTASACGLGQTAPNPILSTLRLFR 547 >gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] Length = 600 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 155/417 (37%), Positives = 245/417 (58%), Gaps = 8/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N + +++ + + G ++ + K L+ + II + SGLRGRGGAGF TG+KW Sbjct: 119 VLENSGYIDPENIDEYIQAGGYEALKKALKMDPEEIIEIITKSGLRGRGGAGFPTGLKWK 178 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F + D Y++ NADE +PG DR+++ +PH +IEG +I ++AIGA FIYVR Sbjct: 179 FTRQAPGDE-KYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRA 237 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ L+ A+ + G LG N G+ DI++ GAGA++CGEETAL+ S+EGK+ Sbjct: 238 EYPLAIRRLKIALKQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALIASIEGKR 297 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR +PP+PA GL+G PT +NNVE+ A VP I+R G Y+ G E ++GTK+F++SG Sbjct: 298 GMPRPRPPYPAQKGLWGKPTNINNVETWANVPWIIRHGWEAYASLGTEKSKGTKVFALSG 357 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + + VE M IT E++ + GG + G + AV GG S C+P ++ +DY+ Sbjct: 358 KIKHGGNVEVPMGITLREILYEIGGGTKTG-KRIKAVQLGGPSGGCIPE-ELFDTPVDYE 415 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + G+ +G+ ++VMD T ++ F ESCG+CT CR GT M +++R Sbjct: 416 SVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMWEILDRFT 475 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH-RC 422 +G A + +++ L ++ ++ ++C LG A P+ ++ FR EE I+ + RC Sbjct: 476 RGEATEEDLEKLERLAYQVKAGSLCGLGQTAPNPVLTTLRYFR---EEYIEHINGRC 529 >gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 639 Score = 285 bits (729), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 153/373 (41%), Positives = 224/373 (60%), Gaps = 5/373 (1%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D II E+K SGLRGRGGAGF TG+KW F K SD Y++ NADE +PG +R+ Sbjct: 184 EMNPDEIIEEIKKSGLRGRGGAGFPTGLKWEFAKKEKSDV-KYVICNADEGDPGAYMNRN 242 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KL 155 M +PH +IEG +I + IGA+ IYVR E+ E LQ A+D+ + G LG + Sbjct: 243 EMESDPHMIIEGMIICGYTIGANEGIIYVRAEYPLAIERLQKAIDDARSLGFLGKDILGT 302 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G+D DI + GAGA++CGEETAL+ S+EGK G+P+ +PPFPA GL+G PT +NNVE+ + Sbjct: 303 GFDFDITIVKGAGAFVCGEETALIASIEGKAGRPKPRPPFPAQKGLWGKPTNINNVETWS 362 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 +P I+ +G W+S FG E + GTK+FS+ G V VE + ++I + G Sbjct: 363 NIPIIVEKGGDWFSKFGTEKSTGTKVFSLVGKVENVGLVEVELGTPVRKII--YDIGGGT 420 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + AV GG S C+P+ ++ +DY+ L E+GS +G+ V+VMD T ++ Sbjct: 421 KKGKIKAVQTGGPSGGCIPS-KLFDTPVDYEHLAEVGSIMGSGGVVVMDEDTCMVDTAKF 479 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F ESCG+C PCREG M +++ + KG A +++ L E+S+ ++ ++C LG Sbjct: 480 FLDFSVDESCGKCVPCREGLTHMYEILDNITKGKASIEDVETLKELSETVKTTSLCGLGQ 539 Query: 396 AAAWPIQGLIKNF 408 A P+ ++ F Sbjct: 540 TAPNPVLTTLEYF 552 >gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 589 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 244/412 (59%), Gaps = 7/412 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +L +Q RI G+ + + D +R + + K L+ R+ II E+K SGLRGRGGAG Sbjct: 104 LLANQQRIVLRNCGIIDPECIEDYEAREGYQALKKALKMERNAIIEEIKKSGLRGRGGAG 163 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW S + Y++ NADE +PG DR + +PH++IEG +I ++AIGA+ Sbjct: 164 FPTGLKWQLCAFENSSK-KYVICNADEGDPGAFMDRSTLEGDPHSVIEGMIIGAYAIGAN 222 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETA 177 +IY R E+ E L+ A+ G LG N LG +H GAGA++CGEETA Sbjct: 223 EGYIYCRAEYPMALEHLKTAISAAEKKGYLGKNI-LGSSFSFALHIKEGAGAFVCGEETA 281 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EGK+G P L+PP+PA GL+G PT +NNVE+ A +P I+ GA + +G E + Sbjct: 282 LMQSIEGKRGMPTLRPPYPAVKGLWGKPTNINNVETWANIPWIIMHGAQEFRKYGTEKSP 341 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M I ++I K GG++ + AV GG S C+PA + Sbjct: 342 GTKVFALAGKIAGSGLIEVPMGIPLKDIIYKVGGGMKTA-NPFKAVQMGGPSGGCIPAEK 400 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I+DYD + G+ +G+ ++VMD T ++ F ++ESCG+CT CR GT Sbjct: 401 LE-TIVDYDSITATGAIMGSGGMVVMDSGTCMVDVARFFLNFTQNESCGKCTFCRIGTKR 459 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M+ ++ R+ +G + +++D L E+++N+ ++C LG A P+ + FR Sbjct: 460 MLEILTRITEGKGELQDLDNLEELAENVIKGSLCGLGQTAPDPVLTTLHYFR 511 >gi|326577021|gb|EGE26916.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 101P30B1] Length = 472 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77 +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM P R Sbjct: 59 TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + LQ Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++EC A+ LLG + LG ++ + VH GAG YICGEETAL+ LEG++ PR KPPF Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251 P G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G A Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 Q +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462 >gi|225621401|ref|YP_002722660.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kDa) subunit [Brachyspira hyodysenteriae WA1] gi|225216222|gb|ACN84956.1| DH:ubiquinone oxidoreductase, DH-binding (51 kDa) subunit [Brachyspira hyodysenteriae WA1] Length = 562 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 154/378 (40%), Positives = 229/378 (60%), Gaps = 10/378 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E D +INE+ SGLRGRGGAGF T KWSF +V SD+ Y+V NADE +PG D Sbjct: 174 LFEMTPDDVINEMHTSGLRGRGGAGFPTWKKWSFTKEVKSDQ-KYIVCNADEGDPGAYMD 232 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152 R I+ +PH++IE IA + IGA+ ++Y+R E+ E ++ A+ + Y GLLG Sbjct: 233 RSILEGDPHSVIEAMTIAGYTIGANKGYLYIRAEYGLAVERVRIALKQAYDYGLLGEKIL 292 Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 S +D+DI + GAGA++CGEETALL S+EG +G PR +PPFPA GL+ PT +NNV Sbjct: 293 GSDFSFDLDIRL--GAGAFVCGEETALLASIEGNRGTPRPRPPFPAIKGLFEKPTVINNV 350 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E+ A V I+ G W++ G EN+ GTK+F+++G+VN VE M T E++ G Sbjct: 351 ETFANVTAIINNGGDWFASIGTENSTGTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGG 410 Query: 272 GIRGGWDNLL-AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GI D + V GG S LP + G +D+D L ++GS +G+ +IV+D ++++ Sbjct: 411 GIPN--DKFVKGVQTGGPSGGILPE-SLFGTRIDFDNLVKLGSMMGSGGMIVIDEDSNMV 467 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 F ESCG+C PCR G M++++E+ K A++ +I L +++ + ++ Sbjct: 468 DFAKFYLGFCVDESCGKCVPCRVGGMQMLKILEKFTKKRAKEDDIQKLRDIALTMRKASL 527 Query: 391 CALGDAAAWPIQGLIKNF 408 CALG AA P+ +K+F Sbjct: 528 CALGSTAANPVMSTLKHF 545 >gi|326561571|gb|EGE11912.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 46P47B1] gi|326567652|gb|EGE17760.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 12P80B1] Length = 472 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77 +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM P R Sbjct: 59 TLADYETLDGFVGLKNALSKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + LQ Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++EC A+ LLG + LG ++ + VH GAG YICGEETAL+ LEG++ PR KPPF Sbjct: 177 NAINECIANRLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251 P G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 296 GLWELPFGHTARELIE-LAGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G A Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413 Query: 371 QKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 Q +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 414 QADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462 >gi|226944922|ref|YP_002799995.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ] gi|226719849|gb|ACO79020.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ] Length = 449 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 158/375 (42%), Positives = 222/375 (59%), Gaps = 6/375 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ VK SGL+GRGGAGF+TG+KW MP S YL+ NADE EP T KDR +M P Sbjct: 58 IVAIVKDSGLKGRGGAGFATGIKWGLMPADDSIDIRYLLCNADEMEPNTWKDRLLMEQLP 117 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG +I++ A+ A+ +I++RGE+I +L A+ E A+GLLG N G+D ++ Sbjct: 118 HQLIEGMLISARALKAYRGYIFLRGEYIDAARNLNRAIAEAKAAGLLGKNILGSGFDFEL 177 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+++ VP I+ Sbjct: 178 FVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLSNVPAIV 237 Query: 222 RRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 G WY R + GTKL SG V P E IT EL E + GG+R G+ Sbjct: 238 GNGVDWYKSLARPGSEDMGTKLMGFSGKVKNPGLWELPFGITARELFEDYAGGMRDGY-R 296 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L GG+ L + A M G+ ++G+ +GT + +D S +++ + L F Sbjct: 297 LKCWQSGGAGTGFLLPEHLD-AQMYAGGIGKVGTRMGTGLALAVDDSINMVSLLRNLEEF 355 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W ++++ L +G Q +++ L ++ + + G+T CA A Sbjct: 356 FARESCGWCTPCRDGLPWSVKLLSALERGEGQPGDLETLEQLVRFLGPGKTFCAHAPGAV 415 Query: 399 WPIQGLIKNFRPLIE 413 P+ +K FR E Sbjct: 416 EPLGSALKYFRQEFE 430 >gi|77918523|ref|YP_356338.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Pelobacter carbinolicus DSM 2380] gi|77544606|gb|ABA88168.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Pelobacter carbinolicus DSM 2380] Length = 571 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 157/412 (38%), Positives = 234/412 (56%), Gaps = 6/412 (1%) Query: 7 RIFTNLYGLQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 R+ N + + D + R G+ + + E + +INE SGLRGRGGAGF G+K Sbjct: 156 RVMRNRGLIDPAKIKDYIGRDGYQGAIKALTEMSSEEVINEAIGSGLRGRGGAGFPIGLK 215 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W F +D Y++ NADE +PG DR++M +PH++IEG +I + AIGAH +IY Sbjct: 216 WKFAAAEKNDI-KYILCNADEGDPGAFMDRNVMESDPHSIIEGLIIGAKAIGAHQGYIYC 274 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 R E+ E+L A+++ A LLG N G+ DI V+ GAGA++CGEETAL+ S+EG Sbjct: 275 RAEYPLAIETLNKAINQARALDLLGENILGTGFSFDISVYEGAGAFVCGEETALMRSIEG 334 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR KPPFPA GL+ PT +NNVE+++ +P I+ +GA WY G E + GTK+FSI Sbjct: 335 KRGNPRPKPPFPAKAGLFEKPTVLNNVETLSNIPQIIVKGADWYKEIGTEKSPGTKIFSI 394 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G + VE + T D ++ + GI NL AV GG S C+P M A+ D Sbjct: 395 TGDIENVGCVEVPIGTTVDTIVNQI--GIVSPDKNLKAVQLGGPSGGCIPKDYMHVAV-D 451 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 Y+ L+E G+ +G+ +I M + F + E+CG+C P REGT M++++E+ Sbjct: 452 YETLQEYGAIMGSGGLIAMSDDKSGVDIAKFFIDFCQDEACGKCLPGREGTKQMLQILEK 511 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + G +I+ L + I +CAL A P+ ++ F +E + Sbjct: 512 IDSGEGSPDDIETLKVLCGVIRKTALCALCKTAVNPVLSTLRYFPEEYQEAV 563 >gi|326574011|gb|EGE23960.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis CO72] Length = 472 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77 +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM P R Sbjct: 59 TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + LQ Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++EC A+ LLG + LG ++ + +H GAG YICGEETAL+ LEG++ PR KPPF Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRANPRTKPPF 235 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251 P G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G A Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 Q +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462 >gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2] gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2] Length = 595 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/397 (39%), Positives = 232/397 (58%), Gaps = 5/397 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G++ + E D II E+ ASGLRGRGGAGF GMKW F + D+ +++ NADE Sbjct: 139 GYFALAKALNEMTPDNIIEEMMASGLRGRGGAGFPAGMKWKFAKQAEGDK-KFVLCNADE 197 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR ++ +PH ++EG IA+ AI AH +IY R E+ + L A+ + Sbjct: 198 GDPGAFMDRSLLESDPHAILEGMTIAAKAINAHKGYIYCRSEYPLAIKRLGIAIAQAKDY 257 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GLLG + G++ DI V+ GAGA++CGEETAL+ S+EGK+G PR +PPFPA+ GL+ P Sbjct: 258 GLLGEDILGSGFNFDIEVYQGAGAFVCGEETALMRSIEGKRGMPRPRPPFPAHKGLWEKP 317 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NNVE++ VP I+ +G WY+ G E ++GTK+F++SG V VE M T L Sbjct: 318 TILNNVETLVNVPQIILKGGEWYASVGTEKSKGTKVFALSGDVANIGLVEIPMGTTLRTL 377 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 + GG+ AV GG S C+P + I DY+ + ++G+ +G+ IVMD Sbjct: 378 VYDIGGGVPNKR-KFKAVQLGGPSGGCVPEEYLDTPI-DYEEIVKVGAIMGSGGAIVMDN 435 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 T ++ F + ESCG+CTPCREGT M+ ++E + KG Q +I+ L ++ I Sbjct: 436 HTCMVDMARYFMDFIQDESCGKCTPCREGTKQMLEILEAICKGKGQSGDIERLETLAHVI 495 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++C LG A P+ ++ FR E I++ RC Sbjct: 496 RRTSLCGLGQTAPNPVLSTLRYFRDEYEAHIEE-KRC 531 >gi|326577453|gb|EGE27337.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis O35E] Length = 472 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77 +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM P R Sbjct: 59 TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + LQ Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++EC A+ LLG + LG ++ + +H GAG YICGEETAL+ LEG++ PR KPPF Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRANPRTKPPF 235 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251 P G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G A Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 Q +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462 >gi|307131810|ref|YP_003883826.1| NADH:ubiquinone oxidoreductase subunit F [Dickeya dadantii 3937] gi|306529339|gb|ADM99269.1| NADH:ubiquinone oxidoreductase, chain F [Dickeya dadantii 3937] Length = 449 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 167/402 (41%), Positives = 235/402 (58%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ + K L +D ++ VK +GLRGRGGAGFSTG+KWS MPK S Sbjct: 27 LDEYRSKNGYAGAQKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIR 86 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ +L+ Sbjct: 87 YLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAANLRR 146 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 147 AIAEATEAGLLGKNIMGTGFNFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 206 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 + G +G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V P E Sbjct: 207 SAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWE 266 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + GG+R G L A PGG+ L + MD++ + + GS L Sbjct: 267 LPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRL 324 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D +++ L F+ ESCG CTPCR+G W ++++ L +G Q +I Sbjct: 325 GTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 384 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L ++ + + G T CA A P+Q IK FR E I Sbjct: 385 ETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 426 >gi|296112936|ref|YP_003626874.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4] gi|295920630|gb|ADG60981.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4] Length = 472 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77 +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM P R Sbjct: 59 TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + LQ Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++EC A+ LLG + LG ++ + VH GAG YICGEETAL+ LEG++ PR KPPF Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251 P G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGVSGRVKDA 295 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G A Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 Q +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462 >gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens PCA] gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens PCA] gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit [Geobacter sulfurreducens KN400] Length = 570 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 155/419 (36%), Positives = 241/419 (57%), Gaps = 10/419 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + ++ G +D + L E + + E+ ASGLRGRGGAG+ G+KW Sbjct: 127 VLANCGSIDPERIEEYVATGGYDALAHALHEMTPEDVCREISASGLRGRGGAGYPAGVKW 186 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + K +R Y+V N DE +PG DR +M +PH ++EG IA +AIGA +IYVR Sbjct: 187 NLARKAPGER-KYVVANGDEGDPGAYMDRSVMESDPHRILEGMAIAGYAIGADQGYIYVR 245 Query: 127 GEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 GE+ L+AA+ + GLLGS S + +DI GAGA++CGEET+L+ S+ Sbjct: 246 GEYYLAGRRLEAAIRDAERKGLLGSRVLGSNFSFRIDI--RTGAGAFVCGEETSLMASIM 303 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G++GQP +PP+PA GL+GCPT +NNVE++A VP I+ RGA+WY+G G + GTK+++ Sbjct: 304 GRRGQPWHRPPYPAQRGLWGCPTLINNVETLATVPAIIGRGATWYAGIGSTRSPGTKVYA 363 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ++G V +E M T E++ GGI GG A GG S C+PA + + Sbjct: 364 LAGQVETAGLIEVPMGTTLREVVFDIGGGIPGG-KRFKAAQSGGPSGGCIPAEHL-DTPL 421 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ ++ +G+ +G+ +I+MD ++ + F + ESCG+C PCR G+ M R++ Sbjct: 422 DYESMERIGTIMGSGGLIIMDETSCMPDVASFFLDFCRDESCGKCIPCRVGSMEMHRLLR 481 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G A ++ L E+ + ++C LG A P+ ++ FR E I + RC Sbjct: 482 RITSGTAWPDDLRRLEELCDLMGATSLCGLGQTAPNPVVSTLRYFRHEYEAHIRE-RRC 539 >gi|326567951|gb|EGE18048.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC1] Length = 472 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77 +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM P R Sbjct: 59 TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + LQ Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++EC A+ LLG + LG ++ + VH GAG YICGEETAL+ LEG++ PR KPPF Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251 P G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGVSGRVKDA 295 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G A Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413 Query: 371 QKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 Q +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 414 QADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462 >gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein [Leptothrix cholodnii SP-6] gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Leptothrix cholodnii SP-6] Length = 627 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 159/386 (41%), Positives = 220/386 (56%), Gaps = 18/386 (4%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF---MPKVCSDRPHYLVVNADESEPGTC 92 L +G +++EVK S LRGRGGAG+ TG KW P D HY+V NADE EPGT Sbjct: 220 LARGWQALLDEVKQSNLRGRGGAGYQTGRKWELCREAPGNTPDNTHYVVCNADEGEPGTF 279 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS- 151 KDR ++ +L EG IA FAIGA F+Y+RGE+ E LQA + + LLG+ Sbjct: 280 KDRVLLSRYADSLFEGMTIAGFAIGARQGFVYLRGEYRYLLEPLQAVLQRRREANLLGAA 339 Query: 152 -NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PP+P G PT VNN Sbjct: 340 IQGREGFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPYPVEHGYLDEPTIVNN 399 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270 VE+ V I GA+W++G G + GTK+ S+SG P E ++E C Sbjct: 400 VETYCAVTHIAVHGAAWWAGIGTPKSTGTKIHSVSGDCERPGIYEYPYGTRIGRILED-C 458 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 G + AV GG S CL A + G + ++ + G A +V DRS D+ Sbjct: 459 GA-----RDTQAVQVGGPSGVCLSAFEF-GRRIAFEDVPTAG------AFMVFDRSRDMF 506 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 + + F+ HESCG CTPCR GT +++ M++L G + ++D+L+E+ K + T Sbjct: 507 EVARNFAQFFAHESCGFCTPCRVGTALVVKRMDKLAAGQGSRHDVDVLFELDKLMHTATH 566 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416 C LG AA P++ I FRP E+R+ Sbjct: 567 CGLGGAACNPLRDTIAKFRPAYEQRL 592 >gi|78224540|ref|YP_386287.1| NADH dehydrogenase I subunit F [Geobacter metallireducens GS-15] gi|78195795|gb|ABB33562.1| NADH dehydrogenase I, F subunit [Geobacter metallireducens GS-15] Length = 591 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 166/420 (39%), Positives = 245/420 (58%), Gaps = 12/420 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T + +SL ++ + ++K + E +I+EVK +GLRGRGG GF TGMKW Sbjct: 115 VMTGCGQIDPESLDAYLAEDGFKAIEKCVKEMTPAAVIDEVKKAGLRGRGGGGFPTGMKW 174 Query: 67 SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 SF C+ P YL+ NADE +PG DR I+ +P+ +IEG +IA++AIG ++ Sbjct: 175 SF----CAATPGKLKYLICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGCSKGYV 230 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ E LQ A+D C G LG N + G+D D+I+ GAGA++CGEETAL+ S+ Sbjct: 231 YVRAEYPLAIERLQKALDVCREKGYLGHNIQGWGFDFDLIIKKGAGAFVCGEETALMASI 290 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++G PR +PPFPA GL+ PT +NNVE+ A V I+ +GA WY+ G + +GTK+F Sbjct: 291 EGERGMPRPRPPFPAVKGLWAKPTNINNVETFANVRHIINKGAEWYASLGTDTTKGTKIF 350 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G V + VE +T ++I CGGI AV GG S C+P ++ Sbjct: 351 AVTGKVKHTGLVEVPAGMTVRDVIYNVCGGIANN-RKFKAVQAGGPSGGCIPP-EVLDTP 408 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G M+ ++ Sbjct: 409 VDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTRMESCGKCVPCRIGLKVMLDIL 468 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ER+ G Q +I+ L E+ I+ ++C LG A PI I+ FR E I RC Sbjct: 469 ERITAGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIRYFREEYEAHITD-KRC 527 >gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] Length = 593 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/413 (38%), Positives = 245/413 (59%), Gaps = 8/413 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +++++ ++R + ++K L E + I++E+K SGLRGRGGAGF TG+KW Sbjct: 116 VLRNCGVINPENINEYIARDGYLALEKALFELTPEQIVDEIKKSGLRGRGGAGFPTGLKW 175 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 K D Y+V NADE +PG DR + +PH++IE +I AIGAH F+Y+R Sbjct: 176 EAGMKASGDV-KYVVCNADEGDPGAYMDRSTIEGDPHSIIEAMIICGKAIGAHQGFVYIR 234 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L+ A+ + + +GLLG N G+D DI + GAGA++CGEETALL S+EG+ Sbjct: 235 AEYPLAIDRLRIAMAQAHENGLLGKNILGSGFDFDIEIRLGAGAFVCGEETALLRSIEGQ 294 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G P KPPFPA GL+G PT +NNVE+ A +P IL +GA W++ G ++++GTK+F+++ Sbjct: 295 RGMPTPKPPFPAQCGLWGKPTVINNVETWANIPVILTKGADWFNKIGTDDSKGTKVFALT 354 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN VE M T E+I + GGI+ G V GG S + + I D+ Sbjct: 355 GKVNNSGLVEVPMGTTLREIIFEIGGGIKNG-KKFKGVQTGGPSGGIITEEHLDTPI-DF 412 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 L ++GS +G+ +IVMD ++ F ESCG+C+PCR GT M ++E++ Sbjct: 413 GALIKLGSMMGSGGMIVMDEDDCVVDVAKFYMEFCVDESCGKCSPCRIGTRQMYTILEKI 472 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +G + ++ L ++ + ++ ++CALG +A P I+ F +E ID Sbjct: 473 SRGNGEMDDLQKLKDIGQAMKTSSLCALGQSAPNPTLSTIRKFE---QEYIDH 522 >gi|149924755|ref|ZP_01913100.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1] gi|149814370|gb|EDM73967.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1] Length = 503 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 234/376 (62%), Gaps = 17/376 (4%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 DK ++G DWII ++K SGL+GRGGAGF +KW + + ++ Y+VVNADE EPGT Sbjct: 138 DKARDEGPDWIIEQLKTSGLQGRGGAGFPAHIKWHAV-RTQAELTRYVVVNADEGEPGTF 196 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 KDR+IM PH +IEG IA++ GA AFIYVRGEF +L+AA+ E + Sbjct: 197 KDREIMLRRPHRMIEGMAIAAWVAGAAKAFIYVRGEFRDCIRALEAAIAE--------AG 248 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 +L + +DI + G GAYICGEETALLE++EGK+G PRLKPP+P GL+G PT +NNVE Sbjct: 249 ERLDW-LDIEIVEGHGAYICGEETALLEAIEGKRGMPRLKPPYPTEKGLWGKPTLMNNVE 307 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++A VP IL RG W+ G+ G+KL+ ISGHV P E + ++ DEL+E GG Sbjct: 308 TLACVPEILSRGGEWFKALGK-TEAGSKLYCISGHVGRPGIYELPLGVSLDELVEA-AGG 365 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 G A PGG+S LP +RG +D+ GL ++GS LG+A V+V++ + D+ A Sbjct: 366 YVG---TPKAFSPGGASSGFLPM-DLRGEPLDFGGLAKLGSMLGSAGVVVLNDTVDMAVA 421 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 +F++ ESCGQC PCR G + +++ + A + + + EV+ ++ +IC Sbjct: 422 ARWQQIFFEDESCGQCAPCRIGCRVQRQAIDKFLDARAPE-SLGHVEEVAWEMDAGSICG 480 Query: 393 LGDAAAWPIQGLIKNF 408 LG A+ P+Q +K F Sbjct: 481 LGMVASLPLQSAMKYF 496 >gi|225850513|ref|YP_002730747.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) [Persephonella marina EX-H1] gi|225646692|gb|ACO04878.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) [Persephonella marina EX-H1] Length = 432 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 167/408 (40%), Positives = 240/408 (58%), Gaps = 16/408 (3%) Query: 20 LSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + ++ G + + K LE+ + + I+ V+ S LRGRGGAGF T KW F + + P Sbjct: 34 IEEYVTTGGYSALRKALERLKPEDIVVLVEESTLRGRGGAGFPTARKWRF--ALMNPEPR 91 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ N DESEPGT KDR I+ +PH L+EG +IA +A+GA +IY+RGE+ L+ Sbjct: 92 YLICNCDESEPGTFKDRIIVERDPHLLLEGMIIAGYALGAKEGYIYIRGEYPAGYLILEN 151 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E + G LG N LG + DI V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+P Sbjct: 152 AIEEAKSYGFLGENI-LGTNFSFDIKVYRGAGAYICGEETALIESLEGKRGHPRLRPPYP 210 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG+YG PT VNNVE+++ +P I+ ++ G G KLF ISG V P E Sbjct: 211 AQVGIYGKPTVVNNVETLSNIPIIVTY-EQYFMNIGPSGFYGPKLFPISGKVEKPGVYEA 269 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +M IT ELI+ GGI+ G AV G V M MDY G G G Sbjct: 270 TMDITLRELID-MAGGIKNG-KRFKAVFSGALGVYSEKDLDMP---MDYS---PKGFG-G 320 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T IV+D II ++ ++ F+ HESCG+CTPCR GT M +++++ +G +++++ Sbjct: 321 TGTTIVLDEDDCIIDSLLVVANFFHHESCGKCTPCRVGTYEQMNILKKIKEGRGTEKDLE 380 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 L +S+NI +IC LG +A + ++ F E +++ + F Sbjct: 381 YLKHLSENIPAGSICGLGFSAPQAVSDALRKFPEEFEAHLNRSCKVCF 428 >gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces bingchenggensis BCW-1] Length = 626 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 163/398 (40%), Positives = 226/398 (56%), Gaps = 18/398 (4%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+ + + SL D + G + + + G +I EV +GL GRGGA F TG KW Sbjct: 213 RLLRRVGVVDPASLDDYRAHGGYAALRRAFALGPAGVIREVGDAGLVGRGGAAFPTGRKW 272 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + D PHYLV NADESEPGT KDR +M +P+ LIE IA + IGAH ++Y+R Sbjct: 273 DATARQ-PDHPHYLVCNADESEPGTFKDRVLMEGDPYALIEAMTIAGYTIGAHHGYLYLR 331 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ R L+ A+ + A GLLG + G DI + GAGAYICGEETA+ S+EG+ Sbjct: 332 GEYPRALARLEHAIGQARARGLLGPDVLGQGIAFDIEIRRGAGAYICGEETAIFNSIEGR 391 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR KPPFP GL+G PT VNNVE++ V IL GA YS G E + GTKLF +S Sbjct: 392 RGEPRSKPPFPVEQGLFGKPTAVNNVETLVNVLPILTEGAEAYSSVGTETSTGTKLFCVS 451 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD- 304 G V+ P E T EL++ + G L AV+ GG++ G +R +D Sbjct: 452 GAVDRPGVYELPFGATLRELLD-----LAGPPPALRAVLLGGAA-----GGFVRPDELDV 501 Query: 305 ---YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 ++G + G+ LG+ V+V+D S ++ + + R++ F++ ESCGQC PCR GT Sbjct: 502 PLTFEGTRAAGTTLGSGVVLVLDESVELPRVLLRIAEFFRDESCGQCVPCRVGTVRQEEA 561 Query: 362 MERLV--KGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 + R+ G A +I LL EV + + +IC LG A Sbjct: 562 LHRIKDRTGAAAAGDIALLREVGQAMRDASICGLGQTA 599 >gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] Length = 592 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 168/399 (42%), Positives = 242/399 (60%), Gaps = 13/399 (3%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + K L R+ +IN +K SGLRGRGGAGF TG+KW + K DR Y+V NADE + Sbjct: 136 YQGLKKALALPREEVINIIKESGLRGRGGAGFPTGLKWEYTFKAPGDR-KYVVCNADEGD 194 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PG DR ++ +PH ++EG +IA++AIGA +IYVR E+ + L+ A+ + G Sbjct: 195 PGAFMDRSVLEGDPHAVLEGMLIAAYAIGAREGYIYVRAEYPLAVQRLRIALAQARERGF 254 Query: 149 LGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 G LG D ++ + GAGA++CGEETALL S++G++G PR +PPFPA GL+G PT Sbjct: 255 CGERI-LGTDFSCELYIREGAGAFVCGEETALLASIQGERGMPRPRPPFPARQGLWGQPT 313 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 +NNVE+ A VP ILRRGA WY+ G E ++GTK+F+++G V VE M IT E+I Sbjct: 314 NINNVETYANVPLILRRGAGWYASLGTEKSKGTKIFALTGKVKNTGLVEVPMGITLREII 373 Query: 267 EKHCGGI---RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 GGI RG AV GG S CLPA + + DYD L G+ +G+ ++VM Sbjct: 374 FNIGGGILEDRG----FKAVQIGGPSGGCLPAEHLDLPV-DYDSLTAAGAMMGSGGLVVM 428 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D ST +++ F + ESCG+CTPCREG M+ ++ R+ +G ++ +++ L +++ Sbjct: 429 DDSTCMVEVARFFLNFTQAESCGKCTPCREGIQQMLAILTRITRGQGREGDLEQLERLAR 488 Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 I+G +C LG A P+ ++ FR E I HRC Sbjct: 489 VIKGTALCGLGQTAPNPVLSTLRYFRAEYEAHIRD-HRC 526 >gi|296127182|ref|YP_003634434.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563] gi|296018998|gb|ADG72235.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563] Length = 562 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 150/378 (39%), Positives = 231/378 (61%), Gaps = 10/378 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E D ++ E++ SGLRGRGGAGF T KWSF V +++ Y+V NADE +PG D Sbjct: 174 LFEMTPDEVLKEMQISGLRGRGGAGFPTWKKWSFTKGVEAEQ-KYIVCNADEGDPGAYMD 232 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152 R I+ +PH++IE IA + +GA ++Y+R E+ + ++ A+++ Y GLLG N Sbjct: 233 RSILEGDPHSVIEAMTIAGYTVGASKGYLYIRAEYGLAVDRVKIALEQAYNYGLLGQNIL 292 Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 S +D+DI + GAGA++CGEETALL S+EG +G PR +PPFPA GL+ PT +NNV Sbjct: 293 GSNFSFDLDIRL--GAGAFVCGEETALLASIEGNRGTPRPRPPFPAIKGLFEYPTVINNV 350 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E+ A V I+ G +W++ G EN++GTK+F+++G+VN VE M T E++ G Sbjct: 351 ETFANVTAIINNGGNWFASIGTENSKGTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGG 410 Query: 272 GIRGGWDNLL-AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GI D + V GG S LP + G +D+D L E+GS +G+ +IV+D ++++ Sbjct: 411 GIPN--DKFVKGVQTGGPSGGILPE-SLFGTHIDFDNLVELGSMMGSGGMIVIDEDSNMV 467 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 F ESCG+C PCR G M++++E+ K A++ +I L +++ + ++ Sbjct: 468 DFAKFYLGFCVDESCGKCVPCRVGGMQMLKILEKFTKKRAKEDDIQKLKDIALTMRKASL 527 Query: 391 CALGDAAAWPIQGLIKNF 408 CALG AA P+ +K+F Sbjct: 528 CALGSTAANPVMSTLKHF 545 >gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC 51170] gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC 51170] Length = 512 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 160/405 (39%), Positives = 239/405 (59%), Gaps = 5/405 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + ++RG + + K L E R II + S LRGRGGAGF TG KW D+ Sbjct: 43 RSIDEYIARGGYFALHKALSEMDRKEIIEIISNSMLRGRGGAGFPTGKKWQTAYDYDVDK 102 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NADE +PG DR I+ ++PH+++E IA +AIG+ FIYVR E+ + ESL Sbjct: 103 -KYIICNADEGDPGAYMDRSILENDPHSVLEAMAIAGYAIGSDEGFIYVRAEYPKAVESL 161 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + G LG N G++ I + G+GA++CGE TAL+ES+EGK+G PR+K Sbjct: 162 KYAIKDAEEKGFLGKNIMDSGFNFTIELRLGSGAFVCGESTALMESIEGKRGMPRVKIHR 221 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A GL+ PT +NNVE++A V I+ GA WY G E + GTK+FS+ G V +E Sbjct: 222 TAFRGLWQKPTVINNVETLANVAQIIINGADWYRSIGTEKSPGTKVFSLVGDVKNSGLIE 281 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E+I GGI G + L AV GG S C+PA + ++ DY+ LKE+ S + Sbjct: 282 VPMGTTLREIIYDLGGGIEGDKE-LKAVQTGGPSGGCIPAKYLDSSV-DYETLKELNSIM 339 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++VMD +T ++ F ESCG+C PCREGT ++ ++ER+V G + +I Sbjct: 340 GSGGMVVMDENTCMVDIARFFLDFTCDESCGKCVPCREGTKRILEILERIVAGKGKMEDI 399 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 D L E+S+ + ++C LG +AA+P+ +K ++ + I H Sbjct: 400 DRLEELSELVTEASLCGLGKSAAFPVISTLKYYKDEYIDHIKNKH 444 >gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] Length = 607 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 163/393 (41%), Positives = 223/393 (56%), Gaps = 10/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + E G +I EV SGL GRGGA F TG KW DRPH Sbjct: 218 SLDDYRAHGGYTALRRAFELGPAGVIREVTDSGLVGRGGAAFPTGRKWQATASQ-PDRPH 276 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 +LV NADESEPGT KDR +M +P+ L+E IA +A GAH ++Y+RGE+ R L+ Sbjct: 277 HLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAGYATGAHKGYLYLRGEYPRALRRLEH 336 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV + A GLLG + GY DI + GAGAYICGEETAL S+EG +G+PR KPPFP Sbjct: 337 AVAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYRGEPRSKPPFPV 396 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT NNVE++ V IL GA Y+ G E + G KLF +SG V P E Sbjct: 397 EKGLFGKPTVENNVETLVNVLPILTLGAPAYAAIGTERSTGPKLFCVSGSVERPGVYEVP 456 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T +L+ G+R G L AV+ GG++ + A ++ + ++G +E G+ LG+ Sbjct: 457 FGATLGDLLA--LAGVRQG---LRAVLLGGAAGGFVRADEL-DVPLTFEGTREAGTTLGS 510 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQKREI 375 V+ D S + + + R++ F++ ESCGQC PCR GT + R+V+ G +I Sbjct: 511 GVVMAFDDSVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIVERTGADAAGDI 570 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL EV + + +IC LG A ++ I Sbjct: 571 ALLREVGRAMRDASICGLGQTAWNAVESAIDRL 603 >gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] Length = 620 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 150/392 (38%), Positives = 239/392 (60%), Gaps = 5/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++++ ++ G + + + LE + II EVK SGLRGRGGAGF T +KWS + SD Sbjct: 145 ENINHYLATGGYRGLLRALEMKPEDIIEEVKDSGLRGRGGAGFPTWLKWSLCRQEESD-V 203 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV NADE +PG +R ++ +PH+L+EG +IAS+A+GA A+IY R E+ E L+ Sbjct: 204 KYLVCNADEGDPGAFMNRSLIEGDPHSLLEGILIASYAVGAEEAYIYCRAEYPLALERLR 263 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + GLLG + G+ +DI + GAGA++CGEETAL+ S+EGK+G PR +PPFP Sbjct: 264 TAISDLRDLGLLGEDILDSGFSLDIRIKEGAGAFVCGEETALIASIEGKRGMPRTRPPFP 323 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT +NNVE++A V I++ G +++ G E + GTK FS+ G V +E Sbjct: 324 TTSGLWGKPTVINNVETLAAVSMIMQHGPEYFNTPGTEGSPGTKTFSLVGDVRRTGLIEV 383 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + + E+I GG+R G L AV GG S CLPA ++ +DYD L G+ +G Sbjct: 384 PLGTSLREVIHDIGGGVRDG--ELKAVQIGGPSGGCLPA-ELVDTGIDYDSLTSAGAIMG 440 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ T +++ F + ESCG+C PCR GT M+ ++ +V+G ++ +++ Sbjct: 441 SGGLVVLSDHTCMVELARYFLEFTQRESCGKCVPCRVGTRQMLMILNDIVEGSGREEDLE 500 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++++ + ++C LG + P+ ++ F Sbjct: 501 ILRDIAETVRAASLCGLGQTSPNPVLTTLRYF 532 >gi|186470175|gb|ACC85638.1| HoxF [Lyngbya majuscula CCAP 1446/4] Length = 538 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 230/378 (60%), Gaps = 9/378 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I E + ++ E+ SGLRGRGGAG+ TG+KW+ + K+ + Y++ NADE +PG D Sbjct: 148 IYEMTPEEVVAEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMD 206 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152 R ++ +PH ++EG IA +A+GA+ +IYVR E+ LQ A+ + G+LG+ Sbjct: 207 RSVLESDPHRILEGMAIAGYAVGANQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQIF 266 Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + + + VDI V GAGA++CGEETAL+ S++G +G PR +PP+PA GL+ PT +NNV Sbjct: 267 GAPVDFSVDIRV--GAGAFVCGEETALIASIDGNRGVPRPRPPYPAVSGLWEKPTLINNV 324 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E+ A + I+R+GA W+ G E ++GTK+FS++G + +E M IT E++E+ G Sbjct: 325 ETFANITPIIRKGADWFGSIGTEKSKGTKIFSLTGKIRNTGLIEVPMGITLREIVEEMGG 384 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+ G + AV GG S C+P + +DY+ L ++GS +G+ ++VMD+ T +I+ Sbjct: 385 GVPDG--EVKAVQTGGPSGGCIPV-HLLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQ 441 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 F + ESCG+C PCR GT M +++ +L+K A +++ L E+ ++ ++C Sbjct: 442 VAQFYMDFCREESCGKCIPCRAGTVQMYQLLTKLIKKQATAADLEKLKELCSMVKATSLC 501 Query: 392 ALGDAAAWPIQGLIKNFR 409 LG A PI + F Sbjct: 502 GLGQTAPNPIVSTLHYFE 519 >gi|83630910|gb|ABC26907.1| HoxF [Arthrospira platensis FACHB341] Length = 531 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 142/371 (38%), Positives = 228/371 (61%), Gaps = 9/371 (2%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ E+ SGLRGRGGAG+ TG+KW+ + K+ + Y++ NADE +PG DR ++ Sbjct: 154 EEVVAEITKSGLRGRGGAGYPTGLKWATVAKMPGQK--YVICNADEGDPGAFMDRSVLES 211 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157 +PH ++EG IA +A+GA +IYVR E+ LQ A+ + +LGS S + + Sbjct: 212 DPHRILEGMAIAGYAVGATQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINF 271 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++DI V GAGA++CGEETAL+ S+ G +G PR +PP+PA GL+ CPT +NNVE++ + Sbjct: 272 NIDIRV--GAGAFVCGEETALIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNI 329 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+R GA WY+ G E ++GTK+FS++G + +E M IT E++E+ GGI GG Sbjct: 330 APIIRNGADWYNQIGTEKSKGTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL 389 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 + AV GG S C+PA Q +DY+ L ++GS +G+ ++VMD +T +++ Sbjct: 390 -QVKAVQTGGPSGGCIPA-QFLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYM 447 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F + E+CG+C PCR GT M +++ +L+ A +++ L ++ + ++C LG A Sbjct: 448 EFCRGETCGKCIPCRVGTVQMYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTA 507 Query: 398 AWPIQGLIKNF 408 P+ ++ F Sbjct: 508 PNPVTSTLQYF 518 >gi|326561160|gb|EGE11525.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 7169] gi|326569469|gb|EGE19529.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC8] gi|326572769|gb|EGE22755.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC7] Length = 472 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 161/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77 +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM P R Sbjct: 59 TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + L+ Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLK 176 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A++EC A+ LLG + LG ++ + +H GAG YICGEETAL+ LEG++ PR KPPF Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRANPRTKPPF 235 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251 P G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G A Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 Q +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462 >gi|254430638|ref|ZP_05044341.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001] gi|197625091|gb|EDY37650.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001] Length = 606 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/397 (37%), Positives = 240/397 (60%), Gaps = 7/397 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ D+++ G + + ++L E + + ++VK SGLRGRGGAG+ TG+KW + + Sbjct: 129 ESIDDALAHGSYAQLKRVLLECTPEQVRDQVKRSGLRGRGGAGYPTGLKWDTV-ALQPPG 187 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P +V NADE +PG DR ++ +PH LIEG IA+FA+GA ++YVR E+ E L Sbjct: 188 PRTVVCNADEGDPGAFMDRSVLESDPHRLIEGMAIAAFAVGADQGYVYVRAEYPLAIERL 247 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + + GLLG+ + +++ + V GAGAY+CGEETALL S++G++G PR +PPF Sbjct: 248 RLALRQARSKGLLGNGIAGSSFNLRLEVRVGAGAYVCGEETALLASIQGQRGTPRPRPPF 307 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA VGL+G PT +NNVE++A +P ILR G WY+ G E ++GTK+F++SG V VE Sbjct: 308 PAQVGLWGAPTLINNVETLASIPVILREGGDWYAAMGTEGSKGTKVFALSGAVERTGLVE 367 Query: 256 ESMSITFDELIEK---HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 M + +++ G G + AV GG S C+PA + +DY+ L+ +G Sbjct: 368 VPMGTSLRTVVQTIGGGVPGGEGPDGGVKAVQTGGPSGGCIPA-HLLDTPVDYESLRALG 426 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ ++VM T + + F +ESCG+C PCR GT ++++++R V+ A Sbjct: 427 SMMGSGGLVVMGERTAMPEVARHFMRFSVNESCGKCVPCRAGTVQLLQLLDRFVERRASL 486 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +++ L + + ++C LG AA P+ ++ FR Sbjct: 487 GDLERLEALCGMVGATSLCGLGQAAPNPVLSTLRYFR 523 >gi|149374623|ref|ZP_01892397.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola DG893] gi|149361326|gb|EDM49776.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola DG893] Length = 460 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 157/402 (39%), Positives = 237/402 (58%), Gaps = 8/402 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + + + + +V L+ G II +K + +RGRGGAGFS G+KWS + + Sbjct: 45 LDEYLRKDGYQSVRAALDNGNPQAIIATMKDANVRGRGGAGFSAGLKWSLTLQGGNMPRG 104 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M +PH LIEG ++ + A + +I++RGE++ L Sbjct: 105 YLICNADEMEPGTFKDRLLMEQQPHLLIEGMILGALANNSFYGYIFLRGEYVEAARVLNR 164 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DE +G LG++ + G+D DI VH GAG YICGEETAL+ SLEGK+ PR KPPFP Sbjct: 165 ALDEAREAGWLGADINGSGFDFDIAVHTGAGRYICGEETALINSLEGKRANPRAKPPFPG 224 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVE 255 G +G P+ VNNVE++ VP ++ +GA WY R ++ G+KL+ +SG V P E Sbjct: 225 QSGAWGKPSVVNNVETLCNVPAVILKGADWYQALSGDRTDDGGSKLYGVSGPVEKPGLWE 284 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E++E+ GG+R +L A +PGG+S L + +D+D + + GS L Sbjct: 285 LPMGTTGAEILER-AGGMRAN-RSLKAWLPGGASTGFLLPEHLD-LPLDFDTVGKEGSRL 341 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + V+ + ++ + L F+ ESCG CTPCR+G W ++++ L G + +I Sbjct: 342 GTGLLTVVPQEQSMVALMRNLEEFFARESCGWCTPCRDGLPWTVKLLRALELGQGETGDI 401 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +LL +++ + G T CA AA P+Q +K+FR E+ + Sbjct: 402 ELLDKLAADCGPGLTFCAHAPGAAMPLQTALKHFRQEFEQGV 443 >gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 583 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 160/415 (38%), Positives = 249/415 (60%), Gaps = 6/415 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +S+ + + +G + ++K+L E + +I E+K SGLRGRGGAGF T Sbjct: 101 QVRIALRNCGAIDPESIEEYIEKGGYKALEKVLKEMTPEQVIEEMKVSGLRGRGGAGFPT 160 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 KW+ + P Y+V NADE +PG DR ++ +PH+++EG IA +AIGA + Sbjct: 161 WFKWN-ATRSAQGSPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAEHGY 219 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+++ G LGSN G+ D+ + GAGA++CGEETAL+ S Sbjct: 220 IYVRAEYPLAIKRLEIAIEQAREKGFLGSNIFGTGFSFDVKIKAGAGAFVCGEETALIAS 279 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG++G PRLKPPFPA G G PT +NNVE+ A VP I+ G ++ G E ++GTK+ Sbjct: 280 LEGERGMPRLKPPFPAQKGYMGKPTNINNVETFANVPWIILNGGKAFAAIGTEKSKGTKV 339 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G V VE M I ++I + GGI+ + AV GG S C+P + Sbjct: 340 FALAGKVKKGGLVEVPMGIPLRDVIFRIGGGIKNDR-KIKAVQLGGPSGGCVPESLLDTP 398 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + DY+ + + G+ +G+ +IVMD +T ++ F + ESCG+CT CR GT M+ + Sbjct: 399 V-DYESIVKTGAIMGSGGMIVMDETTCMVDMARFFLDFTRKESCGKCTHCRLGTKRMLEI 457 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +ER+ +G ++ +++LL E++ N++G ++C LG A P+ ++ FR E I Sbjct: 458 LERICEGRGEESDLELLEELAVNVKGGSLCGLGQTAPNPVLTTLRYFRDEYEAHI 512 >gi|284050504|ref|ZP_06380714.1| NADH dehydrogenase (quinone) [Arthrospira platensis str. Paraca] gi|291570291|dbj|BAI92563.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira platensis NIES-39] Length = 537 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 142/372 (38%), Positives = 228/372 (61%), Gaps = 8/372 (2%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ E+ SGLRGRGGAG+ TG+KW+ + K+ + Y++ NADE +PG DR ++ Sbjct: 154 EEVVAEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMDRSVLES 212 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157 +PH ++EG IA +A+GA +IYVR E+ LQ A+ + +LGS S + + Sbjct: 213 DPHRILEGMAIAGYAVGATQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINF 272 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++DI V GAGA++CGEETAL+ S+ G +G PR +PP+PA GL+ CPT +NNVE++ + Sbjct: 273 NIDIRV--GAGAFVCGEETALIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNI 330 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+R GA WY+ G E ++GTK+FS++G + +E M IT E++E+ GGI GG Sbjct: 331 APIIRNGADWYNQIGTEKSKGTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL 390 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 + AV GG S C+PA Q +DY+ L ++GS +G+ ++VMD +T +++ Sbjct: 391 -QVKAVQTGGPSGGCIPA-QFLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYM 448 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F + E+CG+C PCR GT M +++ +L+ A +++ L ++ + ++C LG A Sbjct: 449 EFCRGETCGKCIPCRVGTVQMYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTA 508 Query: 398 AWPIQGLIKNFR 409 P+ ++ F Sbjct: 509 PNPVTSTLQYFE 520 >gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] Length = 599 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 234/393 (59%), Gaps = 4/393 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +++ + ++ G ++ + K L + II+ + SGLRGRGGAGF TG+KW F + D Sbjct: 129 ENIDEYITVGGYEALKKALSMEPEEIIDIIMKSGLRGRGGAGFPTGLKWKFTREAKGDE- 187 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG DR+++ +PH +IEG +I ++AIGA FIYVR E+ L+ Sbjct: 188 KYIICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRAEYPLAIRRLR 247 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + G LG N G+ DI + GAGA++CGEETAL+ S+EGK+G PR +PP+P Sbjct: 248 IALKQAKERGFLGENILGSGFSFDIEIKEGAGAFVCGEETALIASIEGKRGMPRPRPPYP 307 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A VP I+R G ++ G E ++GTK+F++SG + + VE Sbjct: 308 AQKGLFGKPTNINNVETWANVPWIIRHGWKAFASLGTEKSKGTKVFALSGKIKHGGNVEV 367 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T E++ GG + G + AV GG S C+P + +DY+ + G+ +G Sbjct: 368 PMGTTLREILYDIGGGTKTG-KRIKAVQLGGPSGGCIPE-YLFDTPVDYESVNATGAIMG 425 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++VMD T ++ F ESCG+CT CR GT M+ ++ER +G A K +++ Sbjct: 426 SGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRVGTKRMLEILERFTEGKATKEDLE 485 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +++ ++ ++C LG A P+ ++ FR Sbjct: 486 RLEKLAHQVKAGSLCGLGQTAPNPVLTTLRYFR 518 >gi|77993213|dbj|BAE46793.1| bidirectional hydrogenase F subunit [Nostoc sp. PCC 7422] Length = 541 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 232/376 (61%), Gaps = 13/376 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD------RPHYLVVNADESEPGTCKDRD 96 +++++ SGLRGRGGAG+ TG+KW+ + K D +++ NADE +PG DR Sbjct: 162 VVDDITRSGLRGRGGAGYPTGVKWATVAKAKGDAYGAHSERKFVICNADEGDPGAFMDRS 221 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---S 153 ++ +PH ++EG IA++++GA+ +IY+R E+ LQ A+ + GLLGSN S Sbjct: 222 VLESDPHRVLEGMAIAAYSVGANQGYIYIRAEYPIAINRLQIAIRQAQRLGLLGSNIFDS 281 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + +DI + GAGAY+CGEETAL+ S+EGK+G P +PP+PA GL+G PT +NNVE+ Sbjct: 282 PFDFKIDIRI--GAGAYVCGEETALMASIEGKRGTPHPRPPYPAESGLWGFPTLINNVET 339 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A VP I+R+GA ++ G E ++GTK+F+++G + +E M T +++E+ GG+ Sbjct: 340 YANVPWIIRKGADVFASIGTEKSKGTKVFALAGKIKNTGIIEVPMGTTLRQIVEEMGGGV 399 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G AV GG S C+PA A+ DY+ L ++GS +G+ +IVMD S++++ Sbjct: 400 PDGG-TAKAVQTGGPSGGCIPASAFDSAV-DYESLTQLGSMMGSGGMIVMDESSNMVDVA 457 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F ESCG+C PCR GT + +++ ++ +G A +++LL E+ ++ ++C L Sbjct: 458 RFFMEFCMDESCGKCIPCRVGTVQLYKLLTKISEGKASFADLELLEELCDMVKHTSLCGL 517 Query: 394 GDAAAWPIQGLIKNFR 409 G +A P+ ++ FR Sbjct: 518 GQSAPNPVFSTLRYFR 533 >gi|254425647|ref|ZP_05039364.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Synechococcus sp. PCC 7335] gi|196188070|gb|EDX83035.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Synechococcus sp. PCC 7335] Length = 534 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 241/409 (58%), Gaps = 9/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 Q + N + + + D ++ + + ++L E D + + SGLRGRGGAG+ TG Sbjct: 124 QHIVLENSGKVDPEKIEDYVALQGYAALYRVLREYSPDEVTKAIAQSGLRGRGGAGYPTG 183 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + K+ + Y+V NADE +PG DR ++ +PH ++EG IA++A+GA +I Sbjct: 184 LKWETVAKMPPGQ-KYVVCNADEGDPGAYMDRSVLESDPHRVLEGMAIAAYAVGATQGYI 242 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLE 180 YVRGE+ LQ A+ + GLLGS +S L + +D+ + GAGA++CGEETAL+ Sbjct: 243 YVRGEYPLAINHLQTAIQQARKHGLLGSQIFDSPLDFRIDLRI--GAGAFVCGEETALMA 300 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G P +PP+PA GL+G PT +NNVE+ A + I+R GA W++G G ++GTK Sbjct: 301 SIEGRRGIPEQRPPYPAESGLWGRPTLINNVETYANIAPIIRNGADWFAGIGTGKSKGTK 360 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS++G V +E M I+ +++ GG G ++ AV GG S C+PA Sbjct: 361 VFSLTGKVQNAGLIEVPMGISLQAIVDDIGGGAAAG-RSVKAVQTGGPSGGCIPASAFET 419 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++ DY+ LK++GS +G+ +IVMD T ++ F ESCG+C PCR GT + + Sbjct: 420 SV-DYESLKQLGSIMGSGGLIVMDDQTSMVDVARYFMEFCMEESCGKCIPCRAGTVQLYQ 478 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ + +G A ++ L ++ ++ ++C LG AA P+ ++ FR Sbjct: 479 LLCKFTQGQANSADLTQLEQLCDMVKHTSLCGLGQAAPNPVISTLQYFR 527 >gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 552 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 154/407 (37%), Positives = 236/407 (57%), Gaps = 9/407 (2%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + L ++RG + + L E + + E+ SG+RGRGGAG+ +G+KW + K ++ Sbjct: 138 EKLESYVARGGYTALGHALREMTPEEVCEEIARSGIRGRGGAGYPSGLKWHMVRKAPGEK 197 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N DE +PG DR +M +PH ++EG IA +A+GA +IYVRGE+ + L Sbjct: 198 -KYVVANGDEGDPGAYMDRTLMESDPHRVLEGMAIAGYAVGADQGYIYVRGEYPLAAKRL 256 Query: 137 QAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ GLLGS +S + +DI GAGA++CGEETAL+ S+ G++GQP +P Sbjct: 257 EKAIRAAERRGLLGSRVLDSNFSFRIDI--RMGAGAFVCGEETALMASIMGRRGQPVPRP 314 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+PAN GL+G PT +NNVE+ + I+ GA WY+ FG E ++G K+F+++G VN Sbjct: 315 PYPANKGLWGGPTLINNVETFGNIAAIIGNGAEWYASFGTEKSKGAKIFALAGKVNNTGL 374 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 +E + IT E++ GGI GG A GG S C+PA + I DY+ L+++GS Sbjct: 375 IEVPIGITLREIVYDIGGGIPGG-RAFKAAQTGGPSGGCIPAEYLDTPI-DYETLQKLGS 432 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ +IVMD + + F ESCG+CTPCR GT M R+++++ G A Sbjct: 433 IMGSGGLIVMDDQSCMPDVAKFFMEFCMDESCGKCTPCRVGTVQMHRMLDKITNGTATMD 492 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ L E+ ++ ++C LG A PI ++ FR E I +H Sbjct: 493 DLKRLEELCLMVKESSLCGLGQTAPNPIYSTLRYFRDEYEAHIKDHH 539 >gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1] gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1] Length = 594 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 156/413 (37%), Positives = 241/413 (58%), Gaps = 9/413 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58 L Q RI N+ + +SL RG + +++KI+ +G + +I EV+ SGLRGRGGA Sbjct: 106 LDRQTRIALRNIGQVDPQSLDAYRERGGYRSIEKIITEGIKPEQVIEEVRVSGLRGRGGA 165 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T +KW F ++ YL+ N DE +PG DR ++ +PH +EG +IA++AIGA Sbjct: 166 GFPTAVKWGFARSAKGEK-KYLICNGDEGDPGAFMDRSLLEGDPHNALEGMLIAAYAIGA 224 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176 + Y+R E+ E + A+D+ +GLLG+N LG +D D+ + GAGA++CGEET Sbjct: 225 SSGYAYIRAEYPLAVEHFRKAIDDARKAGLLGNNI-LGSSFDFDVTIKQGAGAFVCGEET 283 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EG++G PR++PPFPA GL+G PT +NNVES+A +P I+ G + Y+ G E + Sbjct: 284 ALIASIEGERGMPRIRPPFPAVKGLFGKPTIINNVESLANLPWIIEHGGAAYAEIGTEKS 343 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G + VE M T E++ GG G + AV GG S C+P Sbjct: 344 KGTKVFALAGPIKRGGLVEVPMGTTVREVLYDIGGGSSAGRP-IKAVQLGGPSGGCIPES 402 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 I +Y+ L G+ +G+ ++VMD + ++ F + ESCG+CT CR GT Sbjct: 403 LFDTPI-EYEALNATGAIMGSGGMVVMDTKSCMVDIARYFLEFTQIESCGKCTFCRIGTL 461 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M ++ R+ G +ID L +++ + ++C LG A P+ +K FR Sbjct: 462 RMKELLTRICDGQGTMDDIDTLEDIAHQVRSSSLCGLGQTAPNPVLTTLKYFR 514 >gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 624 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 151/393 (38%), Positives = 229/393 (58%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D M RG + + K+L++G D +I +K SGLRGRGGAGF TG+KW D+ Sbjct: 158 SIDDYMGRGGYLSFIKVLKEGNPDNVIKTIKDSGLRGRGGAGFPTGVKWEITKNSRGDK- 216 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R ++ +PH ++EG +IA++ IGA + Y+R E+ E + Sbjct: 217 KFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIRAEYPVAVEMFR 276 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GL+G N G+ DI + GAGA++CGEETALL S+EGK+G PR +PP+P Sbjct: 277 KAIEDAKRLGLIGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGKRGVPRPRPPYP 336 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A VP I+R GA Y G N+ GTK+FS++G V +E Sbjct: 337 AQAGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVTGPVKLTGIIEV 396 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T +++ + CGG+ G + AV GG S CL + +DYD LK G+ +G Sbjct: 397 EFGTTLRQIVYEICGGLTGD-NEFKAVQIGGPSGACLSEAFL-DLPLDYDSLKSAGAMVG 454 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + +++ F K ESCG+C PCREG R++ER +G +++ Sbjct: 455 SGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQAYRILERFTQGKGTYEDLE 514 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++ I+ + C LG A PI ++ FR Sbjct: 515 NLEFLAGLIKTASACGLGQTAPNPILSTLRLFR 547 >gi|315185457|gb|EFU19228.1| NADH dehydrogenase (quinone) [Spirochaeta thermophila DSM 6578] Length = 418 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 157/391 (40%), Positives = 227/391 (58%), Gaps = 11/391 (2%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L +SRG + + + L + +I EVKASGLRGRGGAGF TG+KW V + Y Sbjct: 19 LEACLSRGGFMGLRQALARTPAKVIAEVKASGLRGRGGAGFPTGVKWE---SVQRHKEPY 75 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE EPGT KDR IM H P+ LIEG IA +A+GA FIY+RGE+ + L A Sbjct: 76 VVANADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAKGLIKA 135 Query: 140 VDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 V+E LG LG Y DI + G G+Y+ G+ETALL SL G +G P +KPP+P Sbjct: 136 VEEARKHHFLGEKI-LGSDYSFDISIKLGGGSYVVGDETALLNSLMGNRGYPMMKPPYPT 194 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNVE++A VP + +GASW++ G E++ G KLF +SG V+ P E Sbjct: 195 EEGLWGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGLYELP 254 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M + +L+E GG++G L AV GG++ P + +DYD L+ G LG+ Sbjct: 255 MGVPLHDLLEA-AGGVKG---TLKAVQIGGTAGPVYDDRALSFP-LDYDSLRAEGGALGS 309 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AV+VM+ + ++ + + + F+ ESCGQC PCR GT + + ++ G ++ +D Sbjct: 310 GAVVVMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEEYLDE 369 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + C G + A P+ ++ F Sbjct: 370 MRDIVATMTVASFCPFGKSVALPVGNVLDLF 400 >gi|19112649|ref|NP_595857.1| iron sulfur cluster assembly protein (predicted) [Schizosaccharomyces pombe 972h-] gi|74582910|sp|O94500|NDUV1_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; Flags: Precursor gi|4107329|emb|CAA22670.1| iron sulfur cluster assembly protein (predicted) [Schizosaccharomyces pombe] Length = 452 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 152/418 (36%), Positives = 241/418 (57%), Gaps = 11/418 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+F NL + + + D+++ G ++N+ +IL+ II V+ S LRGRG GF TG K Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92 Query: 67 SFMPKVCS------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + K S ++P ++VNA E++ G+ KDR ++RHEPH +IEG +IA+ A+ A Sbjct: 93 LSLYKATSSERGRKEKP-VVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASA 151 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178 ++++R ++ E +Q + + YA LLG N LG + ++++H GAG+YI GEE+AL Sbjct: 152 CYLFIRKDYYEETVMMQKCIIQAYAKKLLGKNL-LGTSIGLELLIHPGAGSYITGEESAL 210 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 ++SL+G+ P + GL+G PT V NVE+++ +P I+++G ++ GR NNRG Sbjct: 211 IQSLQGEFPVPDIPINNTITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFISMGRPNNRG 270 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLFSISG VN P +E MSI +LIE + GG+RGGW+ L+ + PGG L Q Sbjct: 271 TKLFSISGEVNEPNVIEACMSIPLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQC 330 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D LK + S LGT +VIV++ I +++ + FY +C C CR+G + Sbjct: 331 EQVTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDV 390 Query: 359 MRVMERLVKGIAQKREI-DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + ++ L G A ++ D+ + + + C GD+ I + +NF I R Sbjct: 391 IETLKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448 >gi|75910850|ref|YP_325146.1| respiratory-chain NADH dehydrogenase domain-containing protein [Anabaena variabilis ATCC 29413] gi|1032476|emb|CAA55873.1| hydrogenase subunit [Anabaena variabilis ATCC 29413] gi|75704575|gb|ABA24251.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Anabaena variabilis ATCC 29413] Length = 535 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 227/368 (61%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ V SGLRGRGGAG+ TG+KW+ + K +R +++ NADE +PG DR ++ +P Sbjct: 162 VVDSVNRSGLRGRGGAGYPTGLKWATVAKAKGER-KFVICNADEGDPGAFMDRSVLESDP 220 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG IA++A+GA +IYVR E+ + LQ A+ + GLLGSN + +D I Sbjct: 221 HRVLEGMAIAAYAVGASQGYIYVRAEYPIAIKRLQTAIHQAQRLGLLGSNIFESPFDFKI 280 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGAY+CGEETAL+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+ Sbjct: 281 DIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 340 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R+GA W++ G ++GTK+F+++G + +E M + +++E+ GGI G Sbjct: 341 RKGADWFASIGTAKSKGTKVFALAGKIRNTGLIEVPMGTSLRQIVEQMGGGIPDG-GVAK 399 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA + DY+ L +GS +G+ +IVMD +T+++ F Sbjct: 400 AVQTGGPSGGCIPASAFDTPV-DYESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCM 458 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT + ++ ++ +G A +++LL E+ ++ ++C LG +A P+ Sbjct: 459 DESCGKCIPCRVGTVQLHGLLSKIREGKASFADLELLEELCDMVKNTSLCGLGQSAPNPV 518 Query: 402 QGLIKNFR 409 ++ FR Sbjct: 519 FSTLRYFR 526 >gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 595 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 161/412 (39%), Positives = 248/412 (60%), Gaps = 6/412 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ N + + + +++ + + K L E + ++ E+K SGLRGRGG Sbjct: 110 FFRNQTRVVLRNCGQINPDDIHEYIAKDGYKALGKALKEMTPNQVVAEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K D Y++ NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGLKWELTAKSSGDT-KYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E + A+++ GLLG N + + DI V GAGA++CGEETA Sbjct: 229 RQGFVYVRAEYAIAVERVSHAIEQARELGLLGKNLFETDFAFDIEVRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE++A +P I+ GA W++ FG E +R Sbjct: 289 LITSIEGNRGEPRPRPPFPAQKGLWGNPTLINNVETLANIPAIILNGAEWFTQFGTERSR 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T +I GGI G NL AV GG S C+PA Sbjct: 349 GTKVFALAGKINNTGLIEVPMGATLRHVIYDIGGGIPDG-KNLKAVQTGGPSGGCIPAHL 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I +YD L E+GS +G+ +IV+D S ++ F + ESCG+CTPCR GT Sbjct: 408 LDTPI-EYDTLLELGSMMGSGGMIVLDESDCMVDIAKFYLEFTRDESCGKCTPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ER+ +G ++ +I LL E+++ I+ ++C LG +A P+ ++ F+ Sbjct: 467 LLEILERITEGRGKEDDIPLLQELAEGIKETSLCGLGQSAPNPVLSTLRYFK 518 >gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] Length = 630 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 154/369 (41%), Positives = 226/369 (61%), Gaps = 4/369 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D ++ EV SG+RGRGGAGF TG KW F D Y+ NADE +PG DR I+ Sbjct: 186 DEVVKEVLDSGIRGRGGAGFPTGRKWMFTKDAPGDV-KYVACNADEGDPGAFMDRSILEG 244 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159 +PH +IE IAS+A+GAH ++YVR E+ LQ A+D+ GLLG N G+D Sbjct: 245 DPHAVIEAMTIASYAVGAHQGYVYVRAEYPVAVNRLQIALDQAREYGLLGKNILGTGHDF 304 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGA++CGEETALL S+EG +G+PR +PPFPA GL+G PT +NNVE+ A + Sbjct: 305 DIEIRLGAGAFVCGEETALLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQ 364 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+R+GA+WYS G E ++GTK+F++ G + VE M T E+IE+ GGI G Sbjct: 365 IIRKGAAWYSAMGTEKSKGTKVFALGGKITNVGLVEIPMGTTLREIIEEIGGGIPDG-KA 423 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 424 FKAAQTGGPSGGCIPAQHIDTPI-DYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNF 482 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR GT +++++E++ G + +++ + +++ +++ ++CALG +A Sbjct: 483 TVDESCGKCTPCRVGTRKLLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPN 542 Query: 400 PIQGLIKNF 408 P+ ++ F Sbjct: 543 PVLSTLQYF 551 >gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 624 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 162/405 (40%), Positives = 242/405 (59%), Gaps = 7/405 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + S+++ ++ G + ++K L + D IINE+ + LRGRGG GF G KW+ + + Sbjct: 153 IDSTSITEYLATGGYYALEKALFDMTGDEIINEITEANLRGRGGGGFPAGRKWAQVKRQ- 211 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + + Y+V N DE +PG DR IM +PH +IEG +IA A GA +IYVR E+ Sbjct: 212 NAKQKYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMIIAGIACGASEGYIYVRAEYPLAV 271 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L+ A+++ GLLG N LG + +I ++ GAGA++CGE +AL S+EGK+G PR+ Sbjct: 272 SRLKRAIEQAKEFGLLGENI-LGSNFSFNIHINRGAGAFVCGEGSALTASIEGKRGMPRV 330 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPP GL+ PT +NNVE+ A VP I++ GA WY G E + GTK F+++G++ Sbjct: 331 KPPRTVEQGLFDMPTVLNNVETFANVPLIIKNGADWYKSIGTEKSPGTKAFALTGNIENT 390 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E+I GG+R G D AV GG S CL + +D+D LK+ Sbjct: 391 GLIEIPMGTTLREVIFDIGGGMRNGAD-FKAVQIGGPSGGCLSEKDL-DLPLDFDSLKKA 448 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT M+ ++ER+V+G Q Sbjct: 449 GAMIGSGGLVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERIVEGNGQ 508 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+LL E++ I +C LG AAA+P+ IKNFR E I Sbjct: 509 DGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHI 553 >gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 600 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 154/399 (38%), Positives = 235/399 (58%), Gaps = 4/399 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + D + G + + K+L +++EVK+SGLRGRGGAGF TG KW Sbjct: 133 IEDYLVLGGYRAMKKVLTIMTPQAVVDEVKSSGLRGRGGAGFPTGTKWEGALHAKIKDKK 192 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE +PG DR I+ PH ++EG +I +A G+ +IYVR E+ L+ Sbjct: 193 YVICNADEGDPGAFMDRSILEGNPHEVLEGMIICGYATGSDEGYIYVRAEYPMAIRRLKI 252 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ + A+G LG+N G++ I + GAGA++CGE TAL+ S+EG +G PR K Sbjct: 253 AISQAEAAGYLGNNILNSGFNFHIKIKAGAGAFVCGEGTALMASIEGNRGMPRFKASRST 312 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+ PTT+NNVE+ A +PTI+ +GA WYS G +N++GTK+FS++G V VE Sbjct: 313 EKGLWDKPTTMNNVETFANIPTIIVKGALWYSSIGTDNSKGTKVFSLTGKVVNTGLVEVP 372 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M + ++I GGI AV GG S C+PA + + DY+ L ++G+ +G+ Sbjct: 373 MGTSLRQIIFDIGGGIPNNR-KFKAVQSGGPSGGCIPAKYLDLPV-DYNSLGKVGAMMGS 430 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++VMD +T ++ F K+ESCG+CTPCREGT M+ ++ R+ +G + ++ID Sbjct: 431 GGLVVMDDTTCMVDVARFFLNFTKNESCGKCTPCREGTLRMLEILTRICEGKGEPKDIDD 490 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L ++K I G ++C LG +A +P+ ++ FR EE I Sbjct: 491 LERLAKVICGTSLCGLGQSAPFPVLSTLRYFRHEYEEHI 529 >gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Pelobacter carbinolicus DSM 2380] Length = 617 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 166/405 (40%), Positives = 241/405 (59%), Gaps = 7/405 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + D ++ G + ++K L IIN+VK SGLRGRGG GF TG KW F+ D+ Y Sbjct: 152 IEDYIATGGYAGLEKALTMEPQEIINQVKISGLRGRGGGGFPTGTKWQFVADAVGDK-KY 210 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE +PG DR ++ +PH ++EG +IA +AIGA+ IY R E+ + L A Sbjct: 211 IVCNADEGDPGAFMDRSVLEGDPHAIMEGMMIAGYAIGANEGVIYCRAEYPLAIKRLNMA 270 Query: 140 VDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + G+LG N +G D + + + GAGA++CGEETALL S+EGK+G PR++PPFPA Sbjct: 271 IAVAEEMGILGDNI-MGTDFNFKLRIKAGAGAFVCGEETALLNSIEGKRGMPRVRPPFPA 329 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+ PT +NNVE+ A +P I+R G WY+ G E ++G+K+F ++G +N E Sbjct: 330 HKGLWQKPTCLNNVETFANIPFIVRNGGDWYASMGTEKSKGSKVFCLTGKINNTGLAEVP 389 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M IT E++ GGI G AV GG S CLPA Q+ I DYD L G+ +G+ Sbjct: 390 MGITLREVVFNIAGGIADG-KKFKAVQSGGPSGGCLPAEQLDLPI-DYDSLISGGAMMGS 447 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++VMD T ++ F + ESCG+CTPCREGT ++ ++ER+ G+ +ID Sbjct: 448 GGLVVMDEGTCMVDVAKFFLNFTQLESCGKCTPCREGTKRLLEILERICDGLGVPEDIDT 507 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 L ++K I+ +CALG A P+ ++ FR E I++ RC Sbjct: 508 LERLAKTIKTSALCALGQTAPNPVLTTLRYFRNEYEAHINE-KRC 551 >gi|307718325|ref|YP_003873857.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM 6192] gi|306532050|gb|ADN01584.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM 6192] Length = 418 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 156/387 (40%), Positives = 226/387 (58%), Gaps = 11/387 (2%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 +SRG + + + L + +I EVK+SGLRGRGGAGF TG+KW V + Y+V N Sbjct: 23 ISRGGFMGLRQALARPPAKVIAEVKSSGLRGRGGAGFPTGVKWE---SVQRHKEPYVVAN 79 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADE EPGT KDR IM H P+ LIEG IA +A+GA FIY+RGE+ + L AV++ Sbjct: 80 ADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAKGLIKAVEDA 139 Query: 144 YASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 LG LG Y DI + G G+Y+ G+ETALL SL G +G P +KPP+P GL Sbjct: 140 RKHHFLGEKI-LGTDYSFDISLRMGGGSYVVGDETALLNSLMGNRGYPMMKPPYPTEEGL 198 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 +G PT VNNVE++A VP + +GASW++ G E++ G KLF +SG V+ P E M + Sbjct: 199 WGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGLYELPMGVP 258 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 EL+E GG++G L AV GG++ P + +DYD L+ G LG+ AV+ Sbjct: 259 LHELLEA-AGGVKG---RLKAVQIGGTAGPVYDDRALSFP-LDYDSLRAEGGALGSGAVV 313 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 VM+ + ++ + + + F+ ESCGQC PCR GT + + ++ G ++ +D + E+ Sbjct: 314 VMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEEYLDEMREI 373 Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNF 408 + + C G + A P+ ++ F Sbjct: 374 VTTMSVASFCPFGKSVALPVGNVLDLF 400 >gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 596 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 161/413 (38%), Positives = 244/413 (59%), Gaps = 8/413 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q RI N+ + ++ + ++R + + K+L E + +I EVK SGLRGRGGA Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMKPEEVIEEVKKSGLRGRGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K + Y+V NADE +PG DR IM +PH++IEG +I +AIGA Sbjct: 170 GFPTGLKWELGRKAKGEE-KYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176 F+Y+R E+ + L A+++ G+LG N LG D DI + GAGA++CGEET Sbjct: 229 KKGFVYIRAEYPLAIKRLTVALEQARNYGILGENI-LGTDFSFDIEIRIGAGAFVCGEET 287 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+ GA W+S FG E + Sbjct: 288 ALIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGAEWFSSFGTEKS 347 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G +N +E M IT E++ GG G AV GG + C+PA Sbjct: 348 KGTKVFALAGKINMTGLIEVPMGITLREVVYDI-GGGIPGGKKFKAVQIGGPAGGCIPAE 406 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + I DY+ + +G+ +G+ +IVMD ++ F + ESCG+C PCR GT Sbjct: 407 YLDTPI-DYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTK 465 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M+ +++++ KG + ++ L E++ + ++C LG A P+ +K FR Sbjct: 466 RMLDILDKITKGEGTEEDLVELEELAYTVRNTSLCGLGKGAPNPVLTTLKYFR 518 >gi|325971421|ref|YP_004247612.1| NADH dehydrogenase (quinone)., glutamate synthase (NADPH) [Spirochaeta sp. Buddy] gi|324026659|gb|ADY13418.1| NADH dehydrogenase (quinone)., Glutamate synthase (NADPH) [Spirochaeta sp. Buddy] Length = 1050 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/404 (37%), Positives = 235/404 (58%), Gaps = 8/404 (1%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++++ ++ G + + +K+L RD ++ EVK S LRGRGGAGF TG+KW M K S +P Sbjct: 158 NMAEYVAVGGYRSFEKVLGGMSRDEVLLEVKNSKLRGRGGAGFPTGLKWELMAKEPS-QP 216 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +L+ NADE +PG +R+ M +PH LIEG +IAS+A A IYVR E+ + L+ Sbjct: 217 KFLICNADEGDPGAYMNRNEMESDPHMLIEGLLIASYATTAQEGIIYVRAEYPLAVQRLR 276 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+++ YA GLLG N K+ +D+ ++ GAGA++CGEETAL+ SLEG+ G+ R+KPP Sbjct: 277 TAIEQAYAVGLLGDNILERKVRFDLSVV--EGAGAFVCGEETALIASLEGRAGRARVKPP 334 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FP+ G G PTT+NN+E+ +P I+ +G++W++ G + GTK+FS+ G V V Sbjct: 335 FPSQKGYLGRPTTINNLETWCNIPLIIGKGSAWFARIGNPASPGTKVFSLVGKVKNTGLV 394 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + LI + GG + AV GG S C+PA I DY+ L +G+ Sbjct: 395 ELPLGEKLTTLIYEAGGGSVNPSKKIKAVQSGGPSGGCIPASLFNSTI-DYESLGALGAI 453 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ ++VMD ++ + F ESCG CTPCREG + ++ R+ +G + + Sbjct: 454 MGSGGMVVMDSDNCMVDSARYFLEFTTKESCGTCTPCREGLSQALDLVSRICEGAGKLED 513 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L E+ +I +C LG +A P+ +K F E I + Sbjct: 514 VKTLTELGNHISDTALCGLGQSAMNPVLTTLKYFPEEYESHIKR 557 >gi|282895630|ref|ZP_06303755.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Raphidiopsis brookii D9] gi|281199324|gb|EFA74189.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Raphidiopsis brookii D9] Length = 533 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/368 (38%), Positives = 225/368 (61%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ + SGLRGRGGAG+ TG+KW + K S +++ NADE +PG DR ++ +P Sbjct: 160 VVEVITKSGLRGRGGAGYPTGLKWGTVAK-SSGAKKFVICNADEGDPGAFMDRSVLESDP 218 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG IA+++IGA+ +IYVR E+ + L+ A+ + G+LG+N + +D I Sbjct: 219 HRVLEGMAIAAYSIGANQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKI 278 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGAY+CGEETAL+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+ Sbjct: 279 EIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 338 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA W++ G E ++GTK+F+++G + +E M T E++E+ GGI G Sbjct: 339 RNGAEWFANIGTEKSKGTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDG-GMAK 397 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA + DY+ L +GS +G+ +IVMD+ST+++ F Sbjct: 398 AVQTGGPSGGCIPASAFTTPV-DYESLSALGSMMGSGGMIVMDQSTNMVDVARFFMEFCM 456 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT + ++ R+ KG + ++ LL E+ ++ ++C LG +A P+ Sbjct: 457 DESCGKCIPCRVGTVQLHDLLTRISKGKGTQNDLHLLEELCDMVKYTSLCGLGQSAPNPV 516 Query: 402 QGLIKNFR 409 ++ FR Sbjct: 517 FSTLRYFR 524 >gi|209525022|ref|ZP_03273566.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328] gi|209494431|gb|EDZ94742.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328] Length = 537 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 228/372 (61%), Gaps = 8/372 (2%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ E+ SGLRGRGGAG+ TG+KW+ + K+ + Y++ NADE +PG DR ++ Sbjct: 154 EEVVTEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMDRSVLES 212 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157 +PH ++EG IA +A+GA +IYVR E+ LQ A+ + +LGS S + + Sbjct: 213 DPHRILEGMAIAGYAVGATQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSIDF 272 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++DI V GAGA++CGEETAL+ S+ G +G PR +PP+PA GL+ CPT +NNVE++ + Sbjct: 273 NIDIRV--GAGAFVCGEETALIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNI 330 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+R GA WY+ G E ++GTK+FS++G + +E M IT E++E+ GGI GG Sbjct: 331 APIIRNGADWYNQIGTEKSKGTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL 390 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 + AV GG S C+PA + + DY+ L +GS +G+ ++VMD +T +++ Sbjct: 391 -QVKAVQTGGPSGGCIPADFLDTPV-DYESLTRLGSMMGSGGMVVMDENTSMVQVAQFYM 448 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F + E+CG+C PCR GT M +++ +L+ A +++ L ++ ++ ++C LG A Sbjct: 449 EFCRGETCGKCIPCRVGTVQMYQLLTKLLNKQATSADLEKLKQLCDMVKATSLCGLGMTA 508 Query: 398 AWPIQGLIKNFR 409 P+ ++ F Sbjct: 509 PNPVTSTLQYFE 520 >gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] Length = 595 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 154/403 (38%), Positives = 235/403 (58%), Gaps = 5/403 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + +++ ++R + ++K+L E D +I E+K SGLRGRGGAGF T KW Sbjct: 117 VLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKRSGLRGRGGAGFPTWRKW 176 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F +V SD Y+V NADE +PG DR ++ +PH+++E +IA +GAH +IYVR Sbjct: 177 LFTKQVESDM-KYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVGAHKGYIYVR 235 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ L A+++ GLLG + G+ DI + GAGA++CGEETALL S+EG Sbjct: 236 AEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETALLASIEGS 295 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA GL+G PT +NNVE++A +P I+ RG W++ G E ++GTK+F+++ Sbjct: 296 RGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSKGTKVFALT 355 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN VE M T +++ GGI G AV GG S +P + I DY Sbjct: 356 GKVNNSGLVEVPMGTTLRDIVFNIGGGIPNG-KKFKAVQTGGPSGGVIPEEYLDTPI-DY 413 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L+++GS +G+ +IVMD ++ F ESCG+C PCR G + +++R+ Sbjct: 414 ENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRKLYNILDRI 473 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 KG +ID + E+S ++ ++C LG A P+ + F Sbjct: 474 SKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYF 516 >gi|239627948|ref|ZP_04670979.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239518094|gb|EEQ57960.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 1032 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 150/380 (39%), Positives = 231/380 (60%), Gaps = 4/380 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 +++E+KASGLRGRGGAGF TG+KW + + V D ++V NADE +PG DR I+ + Sbjct: 175 VVDEMKASGLRGRGGAGFPTGVKWEAGLKAVSEDGRKFMVCNADEGDPGAFMDRSILEGD 234 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 PH++IEG ++ +AIGA ++YVR E+ E L A+D+ +G+LG + G+ D Sbjct: 235 PHSIIEGMMLGGYAIGASKGYVYVRAEYPIAVERLGNAIDQARKAGILGEDIMGSGFSFD 294 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + + GAGA++CGEET+LL S+EGK+G+PR KPPFP GL+ PT +NNVE++A V I Sbjct: 295 LEIRIGAGAFVCGEETSLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANVAPI 354 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + G+ WY GFG E + GTK+F+++G + +E M ++I + GG G Sbjct: 355 ILNGSGWYHGFGTEKSAGTKVFALAGDIVNAGIIEVPMGTVLGDIIYRI-GGGIIGGKRF 413 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 A+ GG S CL + ++ DY+ L ++G+ +G+ +IVM+ T ++ F Sbjct: 414 KAIQSGGPSGGCLTREHLNTSV-DYESLSKLGAIMGSGGLIVMNEDTCMVDTARYFMDFI 472 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+C PCR GT M+ ++ER+ +G + ++DLL E++K I+ +C LG A P Sbjct: 473 CDESCGKCLPCRNGTRRMLEILERITEGKGEPGDLDLLEELAKTIQQTAMCGLGQTAPNP 532 Query: 401 IQGLIKNFRPLIEERIDQYH 420 + ++ FR E I + H Sbjct: 533 VLSTLRYFRSEYEAHIYEKH 552 >gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 597 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 163/390 (41%), Positives = 233/390 (59%), Gaps = 5/390 (1%) Query: 29 WDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + ++K+L E + +I+ +K SGLRGRGG GF TG+KW F K +D+ Y+ NADE Sbjct: 140 YKALEKVLTEMTPEAVIDTMKKSGLRGRGGGGFPTGVKWEFAAKQTADQ-KYVCCNADEG 198 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 +PG DR ++ +PH++IE IA FAIGA FIYVR E+ + LQ A+DE G Sbjct: 199 DPGAFMDRSVLEGDPHSVIEAMSIAGFAIGATQGFIYVRAEYPIAVKRLQLAIDEAKEYG 258 Query: 148 LLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 +LG N G+ ++ + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+ PT Sbjct: 259 ILGDNVLGTGHKFNLEIRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLWEKPT 318 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 +NNVE+ A VP I+ +GA W+SG G E ++GTK+F++ G +N VE M T E++ Sbjct: 319 ILNNVETYANVPVIILKGAEWFSGIGTEKSKGTKVFALGGKINNTGLVEVPMGTTLREVV 378 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 GGI G A GG S C+PA + I DYD L +GS +G+ +IVMD Sbjct: 379 YDIGGGIPNG-KKFKAAQTGGPSGGCIPASHLDTPI-DYDSLIALGSMMGSGGLIVMDED 436 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 ++ F ESCG+C PCR GT M+ ++ER+ +G + +I+ L ++KNI+ Sbjct: 437 NCMVDIAKFFLEFTVDESCGKCPPCRIGTKRMLEILERITEGKGEAGDIEKLELLAKNIK 496 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +C LG A PI +K FR E + Sbjct: 497 ASALCGLGQTAPNPILSTLKYFRDEYEAHV 526 >gi|92115243|ref|YP_575171.1| NADH-quinone oxidoreductase, F subunit [Chromohalobacter salexigens DSM 3043] gi|91798333|gb|ABE60472.1| NADH dehydrogenase subunit F [Chromohalobacter salexigens DSM 3043] Length = 446 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 161/378 (42%), Positives = 225/378 (59%), Gaps = 7/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I E+K + LRGRGG GFS G+KWS + Y+V NADE EPGT KDR ++ +P Sbjct: 55 LIEELKTANLRGRGGGGFSAGLKWSLTVQGEGIPRGYIVCNADEMEPGTFKDRLLLEQQP 114 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H LIEG ++A FA A+ +I++RGE++ ++Q A+DE A+G LG + + G+D DI Sbjct: 115 HLLIEGMILAGFANNAYQGYIFMRGEYVDAARTVQRALDEARAAGWLGRDVAGSGWDFDI 174 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 +H GAG YICGEETAL+ SLEGK+ PR KPPFP G +G PT VNNVE++ VP+I+ Sbjct: 175 ALHTGAGRYICGEETALINSLEGKRANPRAKPPFPGQSGAWGKPTVVNNVETLCNVPSIV 234 Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 GA WY G G+ + GTKL+ +SG V P E M EL+E+ GG+R G Sbjct: 235 LHGADWYQGLSQGKSGDGGTKLYGVSGKVKRPGLWELPMGTPATELMER-AGGMREG-HT 292 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L +PGG S L + A +D+D + GS LGT + V+ ++ L F Sbjct: 293 LKTWLPGGGSTGFLLPEHLELA-LDFDTIGNAGSRLGTGLIAVVADDQSVVSLTRNLEEF 351 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398 + ESCG CTPCR+G W +++++ L G ++ +IDLL ++ ++ GRT CA AA Sbjct: 352 FARESCGWCTPCRDGLPWSVKLLQALEAGEGERGDIDLLESLAVDLGPGRTFCAHAPGAA 411 Query: 399 WPIQGLIKNFRPLIEERI 416 P+ I FR E + Sbjct: 412 MPLASAIHYFRAEFERGV 429 >gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit [Candidatus Kuenenia stuttgartiensis] Length = 594 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 150/403 (37%), Positives = 236/403 (58%), Gaps = 9/403 (2%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 ++ + +G ++ V K+L +I E+K SGLRGRGGAGF TG+KW F ++ Sbjct: 128 IAPYIKKGGYEAVKKVLGTMSPQQVIEEIKTSGLRGRGGAGFPTGLKWQFARNSTGEK-K 186 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE +PG DR ++ +PH +IEG +I +AIGA ++YVR E+ + L+ Sbjct: 187 YMICNADEGDPGAFMDRAVLEGDPHKVIEGLIIGGYAIGAEHGYVYVRAEYPLAIKRLKL 246 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + LLG N S+ + + I GAGA++CGEETAL+ S+EG++G PRLKPPF Sbjct: 247 AISQATEKNLLGHNILNSEFSFHLKI--KEGAGAFVCGEETALIASIEGERGHPRLKPPF 304 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE++A VP I+ GA Y+ +G E ++GTK+FS++G + +E Sbjct: 305 PAGSGLWGYPTNINNVETLASVPWIINNGAKIYASYGTEKSKGTKVFSLAGKIARGGLIE 364 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M ++I GG G AV GG S C+P ++ +DY+ + G+ + Sbjct: 365 VDMGTPLRDIIYTIGGGTSSG-KPFKAVQLGGPSGGCVPE-RLLDTPVDYESISVTGAIM 422 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++VMD T I+ F ++ESCG+CT CR GT ++ ++E++ +G ++ Sbjct: 423 GSGGMVVMDDDTCIVDVAKFFLTFTQNESCGKCTFCRIGTKRLLEILEKITEGRGGMADL 482 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 D L +S+ ++ ++C LG A PI +K F+ E I + Sbjct: 483 DELESLSEKVKDLSLCGLGKTAPNPIMTTLKYFKDEYVEHIKE 525 >gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 582 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 160/426 (37%), Positives = 252/426 (59%), Gaps = 12/426 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 +L+ Q R+ N + +++ + ++ G ++ + K LE + +I E+K SGL+GRGGA Sbjct: 95 ILSKQKRVALKNCGIIDPENIDEYIATGGYEAMKKCLETMTPEDVIEEIKISGLKGRGGA 154 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ K Y+V NADE +PG DR ++ +PH LIEG +I +AIGA Sbjct: 155 GFPTWFKWN-AAKQSPGSVKYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMIINGYAIGA 213 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEE 175 + IYVR E+ L A++E + G LG N LG +D D+ + GAGA++CGEE Sbjct: 214 NEGIIYVRAEYPLAINRLNHAIEEARSRGYLGKNI-LGLDKFDFDLRIKAGAGAFVCGEE 272 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ESL+G++G PRLKPPFPA G + PT +NNVE+ A V I+ G + + G EN Sbjct: 273 TALIESLQGERGMPRLKPPFPAQRGYWDKPTNINNVETFANVAWIINNGGAAFGHMGTEN 332 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+F+++G + VE M IT +++ GGI+G + AV GG S C+PA Sbjct: 333 SKGTKVFALTGKIKKGGLVEVPMGITLRDIVYDIGGGIKGDKE-FKAVQMGGPSGGCIPA 391 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 ++ +DY+ + ++G+ +G+ ++VMD +T ++ F + ESCG+C CR GT Sbjct: 392 -ELLDTSVDYESIAKIGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCIHCRIGT 450 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 M+ ++ R+ +G ++ +I+LL ++ + I+ ++C LG A P+ I+ FR EE Sbjct: 451 KRMLEILTRICEGEGKEGDIELLEDLGEKIKEGSLCGLGQTAPNPVLSTIRYFR---EEY 507 Query: 416 IDQYHR 421 HR Sbjct: 508 ESHIHR 513 >gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 584 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 242/412 (58%), Gaps = 6/412 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 ML Q RI N + + + D + G ++ + K+L + +I E+K SGLRGRGGA Sbjct: 98 MLKSQVRIALKNCGRINPEDIDDYIKNGGYEALKKVLTSMTPEEVIEEIKISGLRGRGGA 157 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW K D Y+V NADE +PG DR I+ +PH ++EG IA++AIGA Sbjct: 158 GFPTWFKWDAARKASGDI-KYVVCNADEGDPGAFMDRSILEGDPHAVLEGMTIAAYAIGA 216 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ LLG+N + DI + GAGA++CGEETA Sbjct: 217 KEGYIYVRAEYPLAIKRLEIAIEQARNRNLLGNNILNTNFSFDIKLKKGAGAFVCGEETA 276 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PRLKPPFPA GL+G PT +NNVE+ A VP I+ G ++ G E ++ Sbjct: 277 LIASIEGERGMPRLKPPFPAQSGLWGRPTNINNVETYANVPWIITNGGKAFASLGTEKSK 336 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M ++ E+I GGI+ AV GG S C+PA Sbjct: 337 GTKVFALAGKIKRGGLVEVPMGMSLREVIYNIGGGIKDD-KAFKAVQMGGPSGGCIPADL 395 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + DY+ + + G+ +G+ +IVMD +T ++ F ESCG+CT CR GT Sbjct: 396 IDTPV-DYESITKTGAIMGSGGMIVMDETTCMVDIARFFLEFTCKESCGKCTYCRVGTRR 454 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M+ +++R+ G + +++LL E++ +++ ++C LG A P+ ++ F+ Sbjct: 455 MLEILDRICNGEGRDGDLELLEELAVSVKDGSLCGLGQTAPNPVLTTLRYFK 506 >gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 623 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 153/419 (36%), Positives = 242/419 (57%), Gaps = 6/419 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K++ +I+EV SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGKIDAESIEEYIAVGGYQALAKVMGSMSPQEVIDEVTKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + +++ Y+V N DE +PG D +M +P+ +IEG IA++A+GA Sbjct: 196 GFPAGKKWSQVARQ-AEKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ GLLG N G + + ++ GAGA++CGE +A Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEKYGLLGDNILNSGVNFHLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+G PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 315 LTASIEGNRGMPRVKPPRTVEKGLWGKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M T +I GG++ G V GG S CL Q Sbjct: 375 GTKTFSLTGSIENTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLILDQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A +D+D +K++ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 434 LD-APLDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 493 MLEILERIVDGKGEMSDLDELEELANMVQNMALCGLGKSAPLPVISTLKRFRNEYEEHI 551 >gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 619 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 242/408 (59%), Gaps = 6/408 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62 Q R T+ G +S+ D ++ G ++ ++KIL + +I+E+K SGLRGRGG GF T Sbjct: 137 QVRTVTSRLGRTNPESIVDYIATGGYEGLEKILSGMTQQQVIDEIKTSGLRGRGGGGFPT 196 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F D+ Y+V NADE +PG DR ++ +PH+++EG +IA +AIGA + Sbjct: 197 GMKWQFTHNSPGDK-KYIVCNADEGDPGAFMDRSVLEGDPHSVLEGMIIAGYAIGADEGY 255 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L A+ + G+LG N G++ + + GAGA++CGEETALL S Sbjct: 256 IYVRAEYPLAIHRLNLAIAQAEEIGMLGENILDTGFNFKLRIKAGAGAFVCGEETALLTS 315 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G PR++PPFPA GL+ PT +NNVE+ A VP I+R+G WY+ G E ++G+K+ Sbjct: 316 IEGNRGMPRVRPPFPAVKGLWEKPTNLNNVETYANVPFIIRKGGEWYASMGTEKSKGSKV 375 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G + VE M I+ ++I K GGI+ AV GG S CLP ++ Sbjct: 376 FCLTGKIKNTGLVEVPMGISVRDIIYKVGGGIQDD-KKFKAVQAGGPSGGCLPEEKLDLP 434 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + DYD L G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT M+ Sbjct: 435 V-DYDSLNAAGAIMGSGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKRMLET 493 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + R+ +G + +I+ L + + I +C LG A PI ++ F+ Sbjct: 494 LTRICEGTGKPEDIETLERMGRVITKTALCGLGQTCANPILSTMRYFK 541 >gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum] Length = 596 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 165/425 (38%), Positives = 247/425 (58%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ GL + + ++++ + + K+L E + +INE+K SGLRGRGG Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVINEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR ++ +PH+++E IA +AIGA Sbjct: 170 GFPTGIKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W++ G E ++ Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I + GGI G A GG S C+PA Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNG-KKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DYD L +GS +G+ +IVMD ++ F ESCG+C+PCR GT Sbjct: 408 LDTPI-DYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ G ++ +I+ L ++ +I+ ++C LG A P+ I+ FR E I Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTIRYFRDEYEAHIK 526 Query: 418 QYHRC 422 + RC Sbjct: 527 E-KRC 530 >gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 649 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 153/404 (37%), Positives = 239/404 (59%), Gaps = 5/404 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + ++D ++ G + ++ ++L+ + +I EV+ SGLRGRGGAGF TG KW Sbjct: 171 LLANCGYIDPEQIADYVAVGGYRSLVQVLQHMAPEQVIEEVQQSGLRGRGGAGFPTGKKW 230 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + D Y++ NADE +PG DR ++ +PH ++EG +IA +A+G+ +IY R Sbjct: 231 AAARRAAGDI-KYIICNADEGDPGAFMDRSVLEGDPHAVLEGMLIAGYAVGSTVGYIYCR 289 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L+ A+++ GLLG N G+D DII+ GAGA++CGE TAL S+EG+ Sbjct: 290 AEYPLAIKRLKIAIEQARRWGLLGRNILNSGFDFDIILKEGAGAFVCGEGTALQASIEGQ 349 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP GL+ PT +NNVE++A +P I+R GA + G N+ GTK+F++S Sbjct: 350 RGMPRVKPPRSTEKGLWQKPTVLNNVETLANIPLIIRIGAERFRQIGTANSPGTKIFALS 409 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P VE M +T E+I GGIR G AV GG S CL + + D+ Sbjct: 410 GAVANPGLVEVPMGVTLREVIFGIGGGIRDG-KKFKAVQLGGPSGGCLTEQHLDLPV-DF 467 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT M+ ++ER+ Sbjct: 468 DSLTSAGATVGSGGMVVMDENTCMVDVARFFLAFTQAESCGKCTPCREGTKRMLEILERM 527 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +G A ++ L + + ++ ++C LG A P+ +K FR Sbjct: 528 CQGRAGMDDLADLERLCRVVKTTSLCGLGQACPNPVLSTLKYFR 571 >gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 597 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 161/390 (41%), Positives = 233/390 (59%), Gaps = 5/390 (1%) Query: 29 WDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + ++K+L E + +I+ +K SGLRGRGG GF TGMKW F K +++ Y+ NADE Sbjct: 140 YKALEKVLTEMTPEAVIDTMKKSGLRGRGGGGFPTGMKWDFAAKQTAEQ-KYVCCNADEG 198 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 +PG DR ++ +PH++IE IA FAIGA +IYVR E+ + LQ A+D+ G Sbjct: 199 DPGAFMDRSVLEGDPHSVIEAMSIAGFAIGATQGYIYVRAEYPIAVKRLQMAIDQAVEYG 258 Query: 148 LLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 +LG N G+ ++ + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+G PT Sbjct: 259 ILGDNVLGTGHKFNLEIRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLWGKPT 318 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 +NNVE+ A VP I+ +GA W+SG G E ++GTK+F++ G +N VE M T E++ Sbjct: 319 ILNNVETYANVPVIILKGADWFSGIGTEKSKGTKVFALGGKINNTGLVEVPMGTTLREVV 378 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 GGI G A GG S C+P + I DYD L +GS +G+ +IVMD Sbjct: 379 YDIGGGIPKG-KKFKAAQTGGPSGGCIPTEHLDTPI-DYDSLIALGSMMGSGGLIVMDED 436 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 ++ F ESCG+C PCR GT M+ ++ER+ +G + +I+ L ++KNI+ Sbjct: 437 NCMVDIAKFFLEFTVDESCGKCPPCRIGTKRMLEILERITEGKGEAGDIEKLELLAKNIK 496 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +C LG A PI +K FR E + Sbjct: 497 ASALCGLGQTAPNPILSTLKYFRDEYEAHV 526 >gi|325000957|ref|ZP_08122069.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1] Length = 499 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 157/403 (38%), Positives = 234/403 (58%), Gaps = 10/403 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+ + + SL D SRG + + + ++ G +I E+K S L GRGGA F TG+KW Sbjct: 81 RLLRRVGVVDPSSLDDYRSRGGYAALRRAVDLGPTRVIAELKDSSLTGRGGAAFPTGVKW 140 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + +RPH+LV NADESEPGT KDR +M +P L+E IA + GA +Y+R Sbjct: 141 EGVAQ-APERPHHLVCNADESEPGTFKDRVLMEGDPFGLVEAMTIAGYVTGATVGHLYIR 199 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ LQ A+ A GLLG + G+ DI + GAGAYICGEETALLES+EG Sbjct: 200 GEYPLATRRLQDAIAAARARGLLGDDVMGEGFAFDIDLRRGAGAYICGEETALLESIEGY 259 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR KPPFPA+VGL+G PT +NNVE++ V +L G ++ G + G+KLF +S Sbjct: 260 RGEPRNKPPFPASVGLFGKPTAINNVETLYNVLEVLDIGGQAFAVVGGGRSTGSKLFCVS 319 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E T +L++ GG+RG +L V+ GG++ + G + ++ Sbjct: 320 GAVGTPGVYEVDFGTTLRQLLD-LAGGVRG---SLRTVLLGGAAGGFVLPGDLD-VVLTL 374 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G +++G+ LG+ V+V D D+ + R++ F++ ESCGQC PCR GT + RL Sbjct: 375 EGARDIGATLGSGVVLVFDEDADLTGTLRRIAAFFRDESCGQCVPCRVGTVRQEEALARL 434 Query: 366 VKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 + +++ EI LL ++++ + +IC LG A + I Sbjct: 435 ERNAPIGSRETEIALLDDLARVMRDASICGLGQTAPSAVTSAI 477 >gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067] gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067] Length = 596 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 162/417 (38%), Positives = 244/417 (58%), Gaps = 6/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +++ + ++ G ++ + K + + +++EVK SGLRGRGG GF TGMKW Sbjct: 119 VLANCGAINPEAIEEYIAVGGYEALAKAVTQMTPQEVVDEVKKSGLRGRGGGGFPTGMKW 178 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F SD+ Y++ NADE +PG DR ++ +PH ++EG I +A+GA +IYVR Sbjct: 179 QFAKNSESDK-KYVICNADEGDPGAFMDRSVLEGDPHRVLEGMAICGYAMGADEGYIYVR 237 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L+ A+ + GLLG + + + I + GAGA++CGEETAL+ S+EGK Sbjct: 238 AEYPLAIKRLRTAIAQAEEMGLLGEHIFESDFSFTIHIKEGAGAFVCGEETALMASIEGK 297 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA GL+G PT +NNVE+ A V I+ GA WY G E ++GTK+F+++ Sbjct: 298 RGMPRPRPPFPAVSGLWGKPTNINNVETFANVAQIIVNGADWYCRLGTEKSKGTKVFALT 357 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G +N E M I+ E+I GGI G AV GG S CLP M +DY Sbjct: 358 GKINNTGLAEVPMGISMREIIYDIGGGITNG-KKFKAVQIGGPSGGCLPE-SMLDLPVDY 415 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L G+ +G+ ++VMD T ++ F + ESCG+CTPCREGT M+ ++ R+ Sbjct: 416 DSLIAAGAMMGSGGLVVMDEDTCMVDVAKFFLNFTQSESCGKCTPCREGTKRMLEILTRI 475 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +G ++ +I+LL ++KNI+ +C LG A P+ +K FR E I + RC Sbjct: 476 TEGQGREGDIELLENLAKNIKETALCGLGQTAPNPVLSTLKYFRDEYEAHIKE-KRC 531 >gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 229/393 (58%), Gaps = 6/393 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +++ D + + +DK L+ + ++ +K SGLRGRGGAGF TG KW + + Sbjct: 148 ENIDDYVLADGYTALDKALKMTPEEVVEIIKKSGLRGRGGAGFPTGKKWEIALHNKAPK- 206 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE +PG DR I+ +PH+++E + +AIGA +Y+R E+ + L Sbjct: 207 KYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAVCGYAIGAEYGLVYIRAEYPNAMKILA 266 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + G LG N ++ DI + +GAGA++CGEETAL+ S++GK+G+P KPPFP Sbjct: 267 KAIKDAKNHGFLGKNIYNTNFNFDIQLKYGAGAFVCGEETALIRSMQGKRGEPVNKPPFP 326 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A G PT VNNVE++A +P I+++GA W+ FG EN+ GTK+F+++G +N +E Sbjct: 327 AERGYKNSPTNVNNVETLANIPVIIKKGAEWFRSFGTENSPGTKVFALAGKINNTGLIEV 386 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T E+I + GGI+ G AV GG S CL + I D+D L GS +G Sbjct: 387 PMGTTLREIIYEIGGGIKNG-KKFKAVQTGGPSGGCLTMDDLDTPI-DFDNLVAKGSMMG 444 Query: 317 TAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 + +I+MD + + A+ + + F ESCG+CTPCR G ++ +++R+ G + ++ Sbjct: 445 SGGMIIMDED-NCMPAVAKFYLDFTVDESCGKCTPCRIGNKRLLEILKRITDGEGTEDDL 503 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 D L E+S I+ +C LG A P+ ++ F Sbjct: 504 DTLKELSLIIKDSALCGLGQTAPNPVLSTLEKF 536 >gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] Length = 628 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 158/368 (42%), Positives = 228/368 (61%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ EVK +GLRGRGG GF TG+KW K + P Y++ NADE +PG DR I+ +P Sbjct: 186 VVAEVKEAGLRGRGGGGFPTGIKWETAAKQQTG-PKYMICNADEGDPGAFMDRSILEGDP 244 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H+++EG IA +AIGA+ FIYVR E+ +QAA+ + GLLG + G+ DI Sbjct: 245 HSVLEGMAIAGYAIGANHGFIYVRAEYPIAVRRVQAAIKQARDYGLLGEDLFGTGFSFDI 304 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V GAGA++CGEETAL+ S+EGK+G P KPPFPA GL+G PT +NNVE++A VP I+ Sbjct: 305 SVRLGAGAFVCGEETALMNSVEGKRGMPNPKPPFPAVSGLWGQPTVINNVETLANVPIIM 364 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +GASWY+ G E ++GTK+F++ G V VE M IT ++I + GGI GG Sbjct: 365 LKGASWYASIGTEKSKGTKVFALGGKVVNTGLVEVPMGITLRDVIYEIGGGIPGG-KAFK 423 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S CL + + I DYD L +GS +G+ ++VMD T ++ F + Sbjct: 424 AVQTGGPSGGCLTSEHLDRPI-DYDTLLSLGSMMGSGGMLVMDEETCMVDVARYYLDFTR 482 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT ++ ++E++ +G +++ L ++S+ I+ ++C LG A P+ Sbjct: 483 DESCGKCAPCRIGTKRLLEILEKITEGKGTMEDLNALEDLSEQIKAASLCGLGQTAPNPV 542 Query: 402 QGLIKNFR 409 +K FR Sbjct: 543 LSTLKYFR 550 >gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] Length = 596 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 165/425 (38%), Positives = 245/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ GL + + ++++ + + K+L E + +I E+K SGLRGRGG Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEQVIAEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR ++ +PH+++E IA +AIGA Sbjct: 170 GFPTGIKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W++ G E ++ Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I + GGI G A GG S C+PA Sbjct: 349 GTKVFALGGKINNTGLVEVPMGTTLREIIFEIGGGIPNG-KKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DYD L +GS +G+ +IVMD ++ F ESCG+C+PCR GT Sbjct: 408 LDTPI-DYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ G ++ +I+ L ++ +I+ +C LG A P+ IK FR E I Sbjct: 467 MLELLNKITSGKGEEGDIEKLEALANSIKASALCGLGQTAPNPVLSTIKYFRDEYEAHIK 526 Query: 418 QYHRC 422 + RC Sbjct: 527 E-KRC 530 >gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] Length = 597 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 161/400 (40%), Positives = 235/400 (58%), Gaps = 3/400 (0%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +SL D + G ++ + K + + +I EVKASGLRGRGG GF TG+KW+F ++ Sbjct: 131 ESLEDYVKLGGYEAIKKAITMKPEEVIEEVKASGLRGRGGGGFPTGLKWTFCRGAKTEDH 190 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE +PG DR I+ PH +IEG +IA +AIG +IY R E+ E + Sbjct: 191 KYLICNADEGDPGAFMDRSIIEGNPHAVIEGMLIAGYAIGCDEGYIYCRAEYPLAIERVI 250 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + A+G LG Y+ + + GAGA++CGEETAL+ S+EG++G PR +PPFP Sbjct: 251 KAIKDAEAAGYLGKGVFSSDYNFKLKLKEGAGAFVCGEETALIASIEGERGMPRPRPPFP 310 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ P+ VNNVE+ A +P I+ +G+ WYSG G E ++GTK+F++SG + VE Sbjct: 311 AVRGLWQKPSNVNNVETFANLPNIILKGSGWYSGIGTEKSKGTKIFALSGKIKSSGLVEV 370 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M IT ELI GGI AV GG S CL + I DYD L G+ +G Sbjct: 371 PMGITVRELIFDVGGGIPKK-RKFKAVQLGGPSGGCLTPDHLETPI-DYDSLIAAGAMMG 428 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + V+VMD + ++ F + ESCG+C PCR GT M+ +++R+ G ++ +I+ Sbjct: 429 SGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKTMLDILDRITTGKGREGDIE 488 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 LL ++ ++I+ ++C LG A P+ IK FR E I Sbjct: 489 LLQQIGEDIKTSSLCGLGQTAPNPVLTTIKYFRHEYEAHI 528 >gi|124514282|gb|EAY55796.1| NADH dehydrogenase, subunit F [Leptospirillum rubarum] Length = 1048 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 150/405 (37%), Positives = 234/405 (57%), Gaps = 10/405 (2%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D + G ++ + ++ + D +I+ + SGLRGRGGAGF TGMKW F + D Sbjct: 134 SIDDYLKTGGYNALKAVIAGETPDSVIDTLIRSGLRGRGGAGFPTGMKWKFTRQAQGDV- 192 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESL 136 Y+V NADE +PG DR ++ +PH++IEG +I +FAIG A +IY R E+ L Sbjct: 193 KYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNARQGYIYCRAEYPHAIRLL 252 Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ + G LG S L + ++I GAGAY+CGEETALL S+ G +G P KP Sbjct: 253 KKAIAQAMERGYLGERILGSDLSFHLEI--KEGAGAYVCGEETALLASIMGDRGMPWPKP 310 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++ PT +NNVE++A +P I+ GA W++ +G E +GTK F+++G + Sbjct: 311 PFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTKGTKTFALTGKIKRTGL 370 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 +E + T E++ + GG+ G A GG S C+P + I D++ L G+ Sbjct: 371 IEVAAGTTLKEIVYEIAGGM-SGHKKFKAAQLGGPSGGCIPVDLIDTPI-DFESLISAGA 428 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ +IV+D + I+ F K ESCG+CTPCR+GT M+ +++R+ G + + Sbjct: 429 IMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKVMLDMIQRISDGRGEMK 488 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++D L +S ++ ++C LG AA P+ I+ FR E+ I + Sbjct: 489 DLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIKR 533 >gi|326204154|ref|ZP_08194014.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325985665|gb|EGD46501.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 429 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/415 (36%), Positives = 240/415 (57%), Gaps = 6/415 (1%) Query: 6 DRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64 D++ + +G ++ S+ + + G ++ + K + I E+K + L GRGGA + TG+ Sbjct: 2 DKVLSARFGKIKPDSVEEYIQAGGYEGLKKTMSMEHLDAIEEIKKANLFGRGGAAYPTGI 61 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW P Y+V NADE EPGT KD+ I+ +P LIEG I ++ +GA +IY Sbjct: 62 KWE-QAYAIQRGPKYMVCNADEGEPGTFKDKHILAEDPFELIEGMTIGAYIMGAKEGYIY 120 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESL 182 +RGE+ + +++A++ +G LG N + G+D ++ V GAGAY+CGE TAL+ES+ Sbjct: 121 IRGEYAAIQRIVKSAIENAKKAGYLGKNILGREGFDFELKVVSGAGAYVCGENTALVESI 180 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK G+PR KPP+ N GLY PT +NNVE+ + +P I++ G +S G E + GTKL Sbjct: 181 EGKTGRPRQKPPYIKNCGLYQMPTILNNVETYSCIPWIIKDGGDKFSSMGTEFSGGTKLM 240 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG+VN E +T ELI GG++ G L V GGSS C P + I Sbjct: 241 CLSGNVNNRGVYEIPFGLTLRELIFNLGGGMKDG-RKLKFVHLGGSSGSCFPESMIDTKI 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 YD LK+ G LG+ AV+V+D + + + + F++ ESCG+CTPCREG ++ ++ Sbjct: 300 CYYD-LKKAGFSLGSGAVLVVDDTHCAVDYLKTVMEFFEEESCGKCTPCREGNLRLVEIL 358 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++ +G A + + + +++ ++ + C LG +A P+ L+K F E I+ Sbjct: 359 DKMTEGTATMADFNKMKSLAQTMKTTSFCGLGQSAPMPLITLVKYFEEEFLEHIN 413 >gi|254413257|ref|ZP_05027028.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Microcoleus chthonoplastes PCC 7420] gi|196179877|gb|EDX74870.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Microcoleus chthonoplastes PCC 7420] Length = 538 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 250/410 (60%), Gaps = 11/410 (2%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI G + + + + ++ G + ++ K++ + +++++ SGLRGRGG G+ T Sbjct: 116 QMRIVRETSGKIDPERIEEYIAAGGYQSLYKVIHDMTPAEVVDQISKSGLRGRGGGGYPT 175 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW+ M K+ ++ Y++ NADE +PG DR ++ +PH ++EG IA +A+GA AF Sbjct: 176 GLKWATMAKMPGEQ-KYVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAGYAVGATQAF 234 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ + LQ A+ + LLGS S + VDI + GAGA++CGEETAL+ Sbjct: 235 IYVRAEYPLAIDRLQKAIKQAKRLSLLGSQIFGSPFDFKVDIRI--GAGAFVCGEETALI 292 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G PR +PP+PA GL+GCPT +NNVE+ A + I+R GA WY+ G E ++GT Sbjct: 293 ASVEGGRGLPRPRPPYPAQSGLWGCPTLINNVETFANIAVIIREGAEWYANIGTEKSKGT 352 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+++G + +E M IT E++E+ GG+ G + AV GG S C+PA + Sbjct: 353 KVFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPASLLD 410 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + DYD L +GS +G+ ++VMD +T +I+ F + E+CG+C PCR GT M Sbjct: 411 TPV-DYDSLVTIGSMMGSGGMVVMDETTSMIEVAQFYMEFCRGETCGKCIPCRVGTVQMY 469 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + + +++KG A R+I+ L ++ ++ ++C LG A P+ ++ FR Sbjct: 470 QALTKILKGEATMRDIEQLEQLCGMVKDTSLCGLGQTAPNPVMSTLRYFR 519 >gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] Length = 622 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 157/418 (37%), Positives = 237/418 (56%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + +++ G + ++K L E + +I + S LRGRGGAGF TG KW Sbjct: 143 VLKNCGHIDAEHIGGALAVGAYAGIEKALFEMTPEAVIQTIYDSNLRGRGGAGFRTGRKW 202 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+ A +IYVR Sbjct: 203 QQVASQ-KEKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQAQEGYIYVR 261 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ E L+ A+ + A GLLG N LG + +H GAGA++CGE +AL S+EG Sbjct: 262 AEYPLAIERLKTAISQAEAIGLLGDNI-LGTNFSFHLHINRGAGAFVCGEGSALTASIEG 320 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G G + GTK F++ Sbjct: 321 KRGMPRVKPPRTVEQGLWARPTVLNNVETYANVPMIVTNGADWFKGIGTPESPGTKAFAL 380 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G+V +E M IT E+I GGI+ AV GG S CL Q+ MD Sbjct: 381 TGNVRNTGLIEVPMGITLREVIYDIGGGIQND-KKFKAVQIGGPSGGCLTEDQLDSK-MD 438 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L ++G+ +G+ +++MD T +++ F + ESCG+C PCREGT M+ ++ER Sbjct: 439 FDSLAKIGAMIGSGGLVIMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKRMLEILER 498 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +V G + ++D L E++ IE +C LG +A P+ + F E I++ RC Sbjct: 499 IVAGNGKPSDMDELRELADMIESTALCGLGKSAPKPVISTMNAFEEEYLEHINE-KRC 555 >gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 569 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 160/401 (39%), Positives = 245/401 (61%), Gaps = 7/401 (1%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + ++ + + K+L E +++EVK SGLRGRGGAGF TGMKW F+ +D+ Sbjct: 154 SIEEYIAMDGYKALAKVLQEMTPQQVVDEVKKSGLRGRGGAGFPTGMKWQFVLDQKADQ- 212 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+VVN DE +PG DR ++ +P+++IE I +A+GA + Y+R E+ R + Sbjct: 213 KYVVVNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGASKGYAYIRLEYPRAIDHFT 272 Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ GLLG+N LG D DI + GAGA++CGEETALL S+EG++G+PR +PPF Sbjct: 273 KALARAREVGLLGNNI-LGTDFSFDIEIRVGAGAFVCGEETALLASIEGRRGEPRPRPPF 331 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE+ A + I+ +G WY+ G E ++GTK+F+++G +N VE Sbjct: 332 PAVSGLFGKPTLINNVETWANICPIIIKGGDWYATMGTEKSKGTKVFTLAGKINNTGLVE 391 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT E++E GG+ GG A GG S C+PA + I DY+ L +GS + Sbjct: 392 VPLGITLREIVEDIGGGVPGG-KAFKAAQTGGPSGGCIPAAYLDTPI-DYENLAALGSIV 449 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +I++D T ++ F + ESCG+CTPCR GT M+ ++ER+ KG+ ++ +I Sbjct: 450 GSGGMIIVDEGTCMVDLAKFYLGFTQDESCGKCTPCRIGTKRMLEILERITKGVGKEEDI 509 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +LL E++ +I+ +C LG A PI ++ FR E + Sbjct: 510 ELLIELANSIKASALCGLGQTAPNPILSTLRYFRDEYEAHV 550 >gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] Length = 602 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 235/393 (59%), Gaps = 4/393 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +++ + ++ G ++ + K + + II+ + SGLRGRGGAGF TG+KW F D Sbjct: 129 ENIEEYIAAGGYEALKKAFKMKPEEIIDFITKSGLRGRGGAGFPTGLKWKFTRDAPGDE- 187 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE +PG DR+++ +PH +IEG +I ++AIGA FIYVR E+ + L+ Sbjct: 188 KYIVCNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRAEYPLAIKRLR 247 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + G LG N G+ +I++ GAGA++CGEETAL+ S+EGK+G PR +PP+P Sbjct: 248 IALKQAREKGFLGENILGSGFSFEIVIKEGAGAFVCGEETALIASIEGKRGMPRPRPPYP 307 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A VP I++ G Y+ G E ++GTK+F++SG + + VE Sbjct: 308 AQKGLWGRPTNINNVETWANVPWIIKHGWEAYAALGTEKSKGTKVFALSGKIKHGGNVEV 367 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M IT E++ + GG + G + AV GG S C+P + +DY+ + G+ +G Sbjct: 368 PMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIP-DYLFNTPVDYESVTATGAIMG 425 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++VMD T ++ F ESCG+CT CR GT M +++++ KG +I+ Sbjct: 426 SGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRLGTKRMWELLDKITKGEGALEDIE 485 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +++ ++ ++C LG A P+ +K F+ Sbjct: 486 KLEKLAPLVKTGSLCGLGQTAPNPVLTTLKYFK 518 >gi|206602824|gb|EDZ39305.1| NADH dehydrogenase, subunit F [Leptospirillum sp. Group II '5-way CG'] Length = 1048 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 150/405 (37%), Positives = 233/405 (57%), Gaps = 10/405 (2%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D + G + + ++ + D +I+ + SGLRGRGGAGF TGMKW F + D Sbjct: 134 SIDDYLKTGGYSALKAVIAGETPDSVIDTLIRSGLRGRGGAGFPTGMKWKFTRQAQGDV- 192 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESL 136 Y+V NADE +PG DR ++ +PH++IEG +I +FAIG A +IY R E+ L Sbjct: 193 KYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNARQGYIYCRAEYPHAIRLL 252 Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ + G LG S L + ++I GAGAY+CGEETALL S+ G +G P KP Sbjct: 253 KKAIAQAMERGYLGERILGSDLSFHLEI--KEGAGAYVCGEETALLASIMGDRGMPWPKP 310 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++ PT +NNVE++A +P I+ GA W++ +G E +GTK F+++G + Sbjct: 311 PFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTKGTKTFALTGKIKRTGL 370 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 +E + T E++ + GG+ G A GG S C+P + I D++ L G+ Sbjct: 371 IEVAAGTTLKEIVYEIAGGM-SGQKKFKAAQLGGPSGGCIPVDLIDTPI-DFESLISAGA 428 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ +IV+D + I+ F K ESCG+CTPCR+GT M+ +++R+ G + + Sbjct: 429 IMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKVMLDMIQRISDGRGEMK 488 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++D L +S ++ ++C LG AA P+ I+ FR E+ I + Sbjct: 489 DMDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIKR 533 >gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 596 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 157/393 (39%), Positives = 239/393 (60%), Gaps = 5/393 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++++ ++R ++ + K+L + +I EVK SGLRGRGG GF TG+KW + +D+ Sbjct: 128 ENVNEYIARDGYEALGKVLTSMKPQDVIAEVKKSGLRGRGGGGFPTGLKWEIASRFSADQ 187 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NADE +PG DR I+ +PH++IE I +AIGA +Y+R E+ + L Sbjct: 188 -KYVICNADEGDPGAFMDRSILEGDPHSVIEAMAICGYAIGATKGMVYIRAEYPLAVKRL 246 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q A+++ GLLG + G+D D+ + +GAGA++CGEETAL++SLEG +G+P KPPF Sbjct: 247 QKAIEDAREVGLLGKDILGSGFDFDVELRYGAGAFVCGEETALIQSLEGNRGEPVSKPPF 306 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G YG P+ VNNVE+ A VP I+ +GA W++ G E ++GTK+F+++G VN VE Sbjct: 307 PAERGFYGKPSNVNNVETFACVPPIILKGADWFASIGTEKSKGTKVFALAGKVNNVGLVE 366 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT E+I GGIR G AV GG S CL + I D+D L E GS + Sbjct: 367 VPMGITLREVIYDIGGGIRDGR-KFKAVQTGGPSGGCLTEKHLDTPI-DFDTLLEAGSMM 424 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD ++ F ESCG+CTPCR G M+ +++++ +G A + ++ Sbjct: 425 GSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNRRMLEMLDKICQGKATRDDL 484 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + L E++ I+ ++C LG A P+ + NF Sbjct: 485 NRLRELALIIKDTSLCGLGQTAPNPVLSTLDNF 517 >gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 596 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 161/400 (40%), Positives = 238/400 (59%), Gaps = 10/400 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L +S+ + ++R + + K L E I+NEVK SGLRGRGG GF TG+KW F C Sbjct: 126 LDAESIDEYIARDGYRALAKALTEMSPQDIVNEVKKSGLRGRGGGGFPTGLKWEF----C 181 Query: 74 SDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 P Y++ NADE +PG DR I+ +PH++IEG IA+ AIGAH F+Y R E+ Sbjct: 182 QRTPGEIKYVLCNADEGDPGAFMDRSILEADPHSVIEGMTIAAKAIGAHHGFVYCRAEYP 241 Query: 131 RERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 E L+ A+++ GLLG N G+ ++ ++ GAGA++CGEETAL+ S+EGK+G P Sbjct: 242 LAIERLKLAIEKATEYGLLGDNILDTGFSFNLQIYQGAGAFVCGEETALMRSIEGKRGMP 301 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R +PPFPA GLY PT +NNVE+ A V I+ +G WY+ G ++GTK+F+++GHVN Sbjct: 302 RPRPPFPAVKGLYDKPTVLNNVETWANVAPIIIKGGDWYASIGTAGSKGTKVFALTGHVN 361 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 VE M + +I GG+ AV GG S C+P Q DY+ + Sbjct: 362 NIGLVEVPMGTSLRTIIYDIGGGMPKKHRKFKAVQLGGPSGGCVPE-QYLDLPCDYEEII 420 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + G+ +G+ +IVMD ST ++ F + ESCG+CTPCREGT M++++E++ +G Sbjct: 421 KAGAIMGSGGMIVMDDSTCMVDMARFFMEFVQDESCGKCTPCREGTRRMLQILEKICEGR 480 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++DLL E++ I+ +C LG P+ ++ FR Sbjct: 481 GEMSDLDLLEELAAMIKDSALCGLGQTGPNPVLSTLRYFR 520 >gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 641 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 159/396 (40%), Positives = 219/396 (55%), Gaps = 18/396 (4%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L D + G + + + G +I EV SGL GRGGA F TG KW D PHY Sbjct: 253 LDDYRAHGGYTALRRAFALGPAGVIREVTDSGLTGRGGAAFPTGRKWQATASQ-PDHPHY 311 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 LV NADESEPGT KDR +M +P+ L+E IA++A GAH ++Y+RGE+ R ++ A Sbjct: 312 LVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALRRMEHA 371 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + A GLLG + GY DI + GAGAYICGEETAL S+EG +G+PR KPPFP Sbjct: 372 IGQGRARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGHRGEPRSKPPFPVE 431 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT NNVE++ V +L GA Y+ G + G KLF +SG V P E Sbjct: 432 KGLFGRPTAENNVETLVNVLPVLTLGAQAYAAIGTGRSTGPKLFCVSGSVARPGVYELPF 491 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGSG 314 T EL+ G+R DNL AV+ GG++ G +R +D ++G +E G+ Sbjct: 492 GATLGELL--RLAGVR---DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGTT 541 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQK 372 LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ G Sbjct: 542 LGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALRRIADRTGDGAA 601 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +I LL EV + + +IC LG A ++ I Sbjct: 602 DDIALLREVGRTMRDASICGLGQTAWNAVESAIDRL 637 >gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 603 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 162/422 (38%), Positives = 244/422 (57%), Gaps = 13/422 (3%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 + Q RI N + + + D ++ G + + K L R +INE+K SGLRGRGG G Sbjct: 120 FFSPQRRIVLKNCGFINPEDIDDYIAVGGYQGIQKALGGSRMDVINEIKKSGLRGRGGGG 179 Query: 60 FSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 F TGMKW F C + P YL+ NADE +PG DR ++ +PH ++EG +IA++AI Sbjct: 180 FPTGMKWEF----CHNSPGDQKYLICNADEGDPGAFMDRAVLEGDPHAVLEGMMIAAYAI 235 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGE 174 GA A+IY R E+ E A+D+ G LG G D+D I + GAGA++CGE Sbjct: 236 GASKAYIYCRAEYPMAYERSMIAIDQATKRGFLGKKI-FGSDMDFEIKLKLGAGAFVCGE 294 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETAL+ S+EGK+G P +PPFPA GL+G PT +NNVE+ + TI+ +G W++ G E Sbjct: 295 ETALMASIEGKRGMPMPRPPFPAVKGLFGKPTNINNVETFGNIATIMTKGGDWFASVGTE 354 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 ++GTK+F+++G ++Y VE M E+I++ GGI A GG S C+P Sbjct: 355 KSKGTKVFALAGKISYSGLVEIPMGTPLREIIDEIGGGIPNKR-KFKAAQTGGPSGGCIP 413 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 + MDY+ L ++GS +G+ +IV D +T ++ F + ESCG+C PCR G Sbjct: 414 SEHFD-IPMDYENLTQVGSIMGSGGLIVTDETTCMVDMAKFFLGFTQKESCGKCVPCRLG 472 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 T M+ V+ + KG A +++ L E++++++G ++C LG A P+ ++ FR E Sbjct: 473 TKKMLEVLGDISKGKATMEDLEQLLELAQDVKGGSLCGLGQTAPNPVLSTVRYFRDEYEA 532 Query: 415 RI 416 I Sbjct: 533 HI 534 >gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Synergistetes bacterium SGP1] Length = 628 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 154/406 (37%), Positives = 237/406 (58%), Gaps = 7/406 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L++ ++RG + + K L + + + +E+ SGLRGRGGAGF TG KW + + + + H Sbjct: 160 LNEYIARGGYAALGKALHDMTPEAVCDEIDRSGLRGRGGAGFPTGKKWKSVLRQKAPK-H 218 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V N DE +PG D IM P+ +IEG IA++A + +IYVR E+ + L+ Sbjct: 219 YVVCNGDEGDPGAFMDCSIMEGAPYRMIEGMTIAAYAARSDEGYIYVRAEYPLAVKRLRT 278 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++ +GLLG + LG D +H GAGA++CGE +AL S+EG +G PR+KPP Sbjct: 279 AIERATEAGLLG-DGILGTDFSFKLHINQGAGAFVCGEGSALTSSIEGNRGMPRVKPPRT 337 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT +NNVE+ A VP I++ GA W+ G G E + GTK F+++G+V +E Sbjct: 338 VEQGLFGKPTVLNNVETYANVPKIVQEGADWFRGIGTEGSPGTKAFALTGNVVNTGLIEV 397 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T ++I GGIR G AV GG S CL + +D+D L+ +G+ +G Sbjct: 398 PMGTTLRKIIFDIGGGIRNG-KKFKAVQIGGPSGGCLCLDEHLDLPLDFDSLQRIGAMIG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++VMD T +++ F + ESCG+C PCREGT M+ ++ER+V G + ++D Sbjct: 457 SGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEIVERIVGGQGRPEDLD 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 LL E++ ++ +C LG AA P+ ++ FR E + + RC Sbjct: 517 LLEELADTVKNTALCGLGKTAANPVTSTLRYFRDEYEAHVSE-KRC 561 >gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680] gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces avermitilis MA-4680] Length = 607 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 160/393 (40%), Positives = 227/393 (57%), Gaps = 10/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + E G +I EV +GL GRGGA F TG KW DRPH Sbjct: 218 SLDDYRAHGGYAALRRAFELGPAEVIREVTDAGLVGRGGAAFPTGRKWQATASR-PDRPH 276 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 +LV NADESEPGT KDR IM +P+ L+E IA++A+GAH ++Y+RGE+ R E + Sbjct: 277 HLVCNADESEPGTFKDRVIMEGDPYALVESMTIAAYAVGAHQGYLYLRGEYPRALERMSH 336 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ A GLLG + GY DI + GAGAYICGEETAL S+EG +G+PR KPPFP Sbjct: 337 AIEQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYRGEPRSKPPFPV 396 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT NNVE++ V +L GA Y+ G + G KLF +SG V+ P E Sbjct: 397 EKGLFGRPTAENNVETLVNVLPVLTMGAQAYAAIGTAKSTGPKLFCVSGSVDRPGVYELP 456 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T EL+E G+R + L AV+ GG++ + + R + ++G ++ G+ LG+ Sbjct: 457 FGATLGELLE--LAGVR---ERLRAVLLGGAAGGFVRPDE-RDIPLTFEGTRQAGTTLGS 510 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQKREI 375 V+ D + + + + R++ F++ ESCGQC PCR GT + R+V G A +I Sbjct: 511 GVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIVARTGAAAADDI 570 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL EV + + +IC LG +A ++ I Sbjct: 571 ALLREVGRAMRDASICGLGQSAWNAVESAIDRL 603 >gi|309791453|ref|ZP_07685958.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6] gi|308226489|gb|EFO80212.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6] Length = 529 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 157/379 (41%), Positives = 240/379 (63%), Gaps = 8/379 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+E+ SGLRGRGGAG+ TG+KWS + K +R Y+V N DE +PG DR ++ +P Sbjct: 156 VIDEITRSGLRGRGGAGYPTGLKWSTVAKSRGER-KYVVCNGDEGDPGAFMDRSVLESDP 214 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159 H ++EG IA++AIGA +IYVRGE+ + LQ A+++ GLLGS +S + V Sbjct: 215 HLVLEGMCIAAYAIGADQGYIYVRGEYPFAIQRLQKAINQAKKFGLLGSQIFDSTFDFRV 274 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI V GAGA++CGEETALL S+EG++GQPR +PP+PA GL+G PT +NNVE+ A + + Sbjct: 275 DIRV--GAGAFVCGEETALLASIEGRRGQPRPRPPYPAESGLWGKPTLINNVETFANIAS 332 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ G WY+ G E +RGTK+F+++G ++ +E M IT E++ + GG G + Sbjct: 333 IIEHGPDWYASIGTETSRGTKVFALTGKIHNTGLIEVPMGITLREIVHQLGGGGHSGSE- 391 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AV GG S C+PA + +DY+ L ++GS +G+ ++VMD ST++++ F Sbjct: 392 VKAVQTGGPSGGCIPA-SLFDTPVDYESLAQVGSIMGSGGMVVMDNSTNMVELAKFYMEF 450 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 K ESCG+C PCR GT + R++E++ G + +ID L E+ + + ++C LG +A Sbjct: 451 CKDESCGKCVPCRVGTVQIHRLLEKITAGQGSQADIDQLQELCQLLRNTSLCGLGQSAPN 510 Query: 400 PIQGLIKNFRPLIEERIDQ 418 P+ +K F E I++ Sbjct: 511 PVMSTLKYFTEEYEHLIER 529 >gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 596 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 164/425 (38%), Positives = 247/425 (58%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ GL + + ++++ + + K+L E + +I+E+K SGLRGRGG Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVISEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR ++ +PH+++E IA +AIGA Sbjct: 170 GFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W+S G E ++ Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I + GGI G A GG S C+PA Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNG-KKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DYD L +GS +G+ +IVMD ++ F ESCG+C+PCR GT Sbjct: 408 LDTPI-DYDSLLSIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ G ++ +I+ L ++ +I+ ++C LG A P+ ++ FR E I Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTLRYFRDEYEAHIK 526 Query: 418 QYHRC 422 + RC Sbjct: 527 E-KRC 530 >gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] Length = 643 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 156/394 (39%), Positives = 230/394 (58%), Gaps = 5/394 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + + G ++ + K+L + +I + ASGLRGRGGAGF TG KW F +D+ Sbjct: 175 EKIEEYIGTGGYEALGKVLTTMSPEDVIEVITASGLRGRGGAGFPTGRKWQFAKDNDADQ 234 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+ NADE +PG DR ++ +PH ++E IA +AIGA +IYVR E+ E L Sbjct: 235 -KYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGATQGYIYVRAEYPIAVERL 293 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + GLLG N G+D DI + GAGA++CGEETAL+ S+EG +G+PR +PPF Sbjct: 294 NIAIKQAREMGLLGKNLFNTGFDFDIELRLGAGAFVCGEETALMTSIEGHRGEPRPRPPF 353 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+ PT +NNVE+ A VP I+ GA W+S FG E ++GTK+F++ G ++ VE Sbjct: 354 PAVKGLFEKPTILNNVETWANVPQIIMNGAEWFSSFGTEKSKGTKVFALGGKIHNTGLVE 413 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E++E+ GG G A GG S C+PA + I DY+ L +GS + Sbjct: 414 VPMGTTLREIVEEI-GGGIPGGKKFKAAQTGGPSGGCIPAEHLDVPI-DYENLMAIGSMM 471 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD T ++ F ESCG+C+PCR GT ++ +++++ G A ++ Sbjct: 472 GSGGLIVMDEETCMVDIAKFFLNFTVDESCGKCSPCRLGTKRLLEMLDKITSGNATMEDL 531 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 D L E+ I+ +CALG A P+ + FR Sbjct: 532 DKLEELCYYIKDNALCALGQTAPNPVLSTLHYFR 565 >gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 633 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 155/409 (37%), Positives = 233/409 (56%), Gaps = 6/409 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q + N+ + ++DS++ G + + K +LE + ++ EV+ SGLRGRGGAGF TG Sbjct: 149 QRVVLRNIGRIDPTDIADSIAIGSYQALAKALLEMTPEHVVREVEKSGLRGRGGAGFPTG 208 Query: 64 MKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 KW + P Y+V N DE +PG D +M +PH +IEG ++ +FA+GAH Sbjct: 209 RKWRGAMAAAKKKGGPVYVVCNGDEGDPGAFMDCMVMEGDPHAVIEGMILGAFALGAHQG 268 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 FIYVR E+ + L A+D+ GLLG N G+ DI ++ GAGA++CGE TAL Sbjct: 269 FIYVRAEYPVAIKHLTMAMDQARTLGLLGENILGSGFSFDIQINRGAGAFVCGESTALFT 328 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PR K A GL+G PT +NNVE+ A VP I+ G W++G G ++ GTK Sbjct: 329 SIEGKAGEPRPKYVRSAEEGLWGKPTVLNNVETWANVPQIIENGGQWFAGIGVPHSTGTK 388 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G VN VE M + ++E GG+ GG AV GG S CLP +R Sbjct: 389 VFSLVGKVNNVGLVEVPMGVPLRTIVEDIGGGVPGG-KPFKAVQTGGPSGGCLPYA-LRD 446 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L + GS +G+ +IVMD ++ F + ESCG+C PCR G + Sbjct: 447 VAVDFDSLTKAGSMMGSGGMIVMDERDCVVDVARYFLRFLEEESCGKCLPCRLGVTRLRE 506 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +++ + G ++ +I+ + +S ++ ++CALG +A P+ +K FR Sbjct: 507 MLDEISAGRGKEEDIEAILSLSAAVKDGSLCALGGSAPNPVLTTLKYFR 555 >gi|282899670|ref|ZP_06307634.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281195549|gb|EFA70482.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 533 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 225/368 (61%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ + SGLRGRGGAG+ TG+KW + K + +++ NADE +PG DR ++ +P Sbjct: 160 VVEVITKSGLRGRGGAGYPTGLKWGTVAKSPGAK-KFVICNADEGDPGAFMDRSVLESDP 218 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG IA+++IGA+ +IYVR E+ + L+ A+ + G+LG+N + +D I Sbjct: 219 HRVLEGMAIAAYSIGANQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKI 278 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGAY+CGEETAL+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+ Sbjct: 279 EIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 338 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA W++ G E ++GTK+F+++G + +E M T E++E+ GGI G Sbjct: 339 RNGAEWFANIGTEKSKGTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDG-GMAK 397 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA + DY+ L +GS +G+ +IVMD++T+++ F Sbjct: 398 AVQTGGPSGGCIPASAFTTPV-DYESLSALGSMMGSGGMIVMDQTTNMVDVARFFMEFCM 456 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT + ++ R+ +G + ++ LL E+ ++ ++C LG +A P+ Sbjct: 457 DESCGKCIPCRVGTVQLHDLLTRISQGKGTQNDLHLLEELCDMVKHTSLCGLGQSAPNPV 516 Query: 402 QGLIKNFR 409 ++ F+ Sbjct: 517 FSTLRYFK 524 >gi|301060225|ref|ZP_07201092.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300445737|gb|EFK09635.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 651 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 154/407 (37%), Positives = 234/407 (57%), Gaps = 7/407 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + D ++ G + + K L+ + +I EVKASGLRGRGGAGF TGMKW K Sbjct: 157 EEIDDYLAHGGYAALAKALQSSPEMVIEEVKASGLRGRGGAGFPTGMKWELAAKA-GRVE 215 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++ NADE +PG DR I+ PH ++EG +I + AIGA A +YVR E+ + + Sbjct: 216 KTVICNADEGDPGAYMDRTILESNPHQVLEGIIICARAIGAQKAVVYVRAEYPLAVKMVT 275 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ LLG + LG + +DI V G+GA++CGEETAL++S+EG++G P +PPF Sbjct: 276 RAIARAKEMRLLG-DRILGSPFSLDIEVFQGSGAFVCGEETALIQSIEGRRGMPTYRPPF 334 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P GL+G PT +NNV++ A VP ++ GA + G E + GT +FS+ G+V + VE Sbjct: 335 PVQKGLWGQPTVINNVKTFATVPFVVAHGALQFREVGTEKSPGTAIFSVVGNVRHAGLVE 394 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + L+ CGGI AV GG S CLPA + +D+D L E G+ + Sbjct: 395 IPMGVDLRTLVFDTCGGIP-NKKAFKAVQIGGPSGGCLPA-EFLDTPIDFDSLTEAGAMM 452 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++VMD T ++ F + ESCG+CT CR GT ++ ++ R+ KG ++ ++ Sbjct: 453 GSGGMVVMDEDTCMVDVARYFLDFTQKESCGKCTFCRVGTHHLLEILVRITKGEGREGDL 512 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++L +S++I+ ++C LG A P+ +K FR E I + RC Sbjct: 513 EILESLSEDIKAGSLCGLGKTAPNPVLTSLKYFRDEYEAHIKE-KRC 558 >gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. SR1/5] Length = 623 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 156/426 (36%), Positives = 246/426 (57%), Gaps = 9/426 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + +S G + + K E +I+E+ SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGKIDAESIDEYISVGGFSAMAKAFFEMTPQGVIDEISKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + S++ Y+V N DE +PG D +M +P+ +IEG VIA++A+GA Sbjct: 196 GFPAGKKWSQVARQ-SEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176 +IYVR E+ + L+ A+++ + GLLG N LG ++ +H GAGA++CGE + Sbjct: 255 EDGYIYVRAEYPLSVQRLRMAIEQAESYGLLGDNI-LGSGINFHLHINRGAGAFVCGEGS 313 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL S+EG +G PR+KPP GL+G PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 314 ALTASIEGNRGMPRVKPPRTVEQGLWGKPTVLNNVETYANVPKIILQGADWFHTIGTEGS 373 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK FS++G + +E M + +I GG++ G V GG S CL Sbjct: 374 PGTKTFSLTGSIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIDD 432 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q+ +D+D +K++ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 433 QIDHP-LDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTK 491 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEER 415 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR +E Sbjct: 492 RMLEILERIVAGKGELSDLDELEELANMVQSMALCGLGKSAPLPVISTLKRFRDEYVEHI 551 Query: 416 IDQYHR 421 +D+ R Sbjct: 552 VDKKCR 557 >gi|87303135|ref|ZP_01085933.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Synechococcus sp. WH 5701] gi|87282302|gb|EAQ74262.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Synechococcus sp. WH 5701] Length = 528 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 150/413 (36%), Positives = 245/413 (59%), Gaps = 16/413 (3%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDW----IINEVKASGLRGRGGAG 59 Q RI GL L +++ G + ++++L R W ++ E++ SGLRGRGGAG Sbjct: 114 QRRIVLEHCGLIDPTDLEQAIAVGAYGQLERVL---RGWSPEQVVTELQRSGLRGRGGAG 170 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + TG+KW+ + ++ R +V NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 171 YPTGLKWATVARMPGAR-KVVVCNADEGDPGAFMDRAVLEGDPHRVLEGMAIAAYAVGAD 229 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176 FIY+R E+ E L+ A+++ G LG+ + G+ +++ V GAGAY+CGEET Sbjct: 230 HGFIYIRAEYELAIERLRLAIEQAVVRGRLGAALFGTGFGFTLELRV--GAGAYVCGEET 287 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G PR +PP+PA G+ G PT +NNVE+ A V ILR GA W++ G + Sbjct: 288 ALIASIEGKRGTPRPRPPYPAERGVGGRPTLINNVETFANVAPILREGADWFAAIGTAGS 347 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+FS++GHV VE M + ++ + G G + AV GG S C+PA Sbjct: 348 SGTKVFSLTGHVRRGGLVEVPMGTSLATVVLEMGEGSPQG-SAVKAVQTGGPSGGCVPAD 406 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ +DY+ L+ +G+ +G+ ++V+D+ TD++ F + ESCG+C PCR GT Sbjct: 407 RLD-TPLDYESLQALGTIMGSGGMVVLDQGTDMVALAAYFMAFCREESCGKCVPCRAGTV 465 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++E+++ G A + ++D L + + ++C LG +A P+ ++ FR Sbjct: 466 QLHGLLEKILAGQASQADLDQLETLGAMVMDTSLCGLGQSAPKPMLSTLRYFR 518 >gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 774 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 237/405 (58%), Gaps = 7/405 (1%) Query: 24 MSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 ++ G + V K+ + D ++ EVK + LRGRGGAGF G KW+ + P ++ Sbjct: 154 IAAGGFKAVKKMFSRMSPDDVLEEVKKANLRGRGGAGFPAGFKWAHTKRSGKGVPKLVIA 213 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N DE +PG DR IM +P +L+EG +I +++I A+ FIYVR E+ ++L+ A+ + Sbjct: 214 NGDEGDPGAFMDRSIMEGDPFSLLEGMLICAYSIDANFGFIYVRHEYPLAIKTLEKAIKQ 273 Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV-- 199 GLLG N G+D + + GAGA++CGE T+L+ SLEG++G PR +PP + V Sbjct: 274 AEEMGLLGRNILGTGFDFSVFIKEGAGAFVCGEATSLVASLEGQRGFPRARPPRLSEVGG 333 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G +G P+ +NN+E+ A VP I+ +GA W+ G G + GTK+FS++G VN VE M Sbjct: 334 GAWGYPSNLNNIETYACVPPIIEKGADWFLGIGTPGSPGTKVFSLAGKVNNTGLVEVPMG 393 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 IT E++++ GGI A+ GG S C+P Q +D+D L ++GS +G+ Sbjct: 394 ITLREIVDEIGGGILNNR-KFKAIQTGGPSGGCIPE-QYLDLPVDFDSLWQVGSMMGSGG 451 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 ++VMD S ++ F + ESCG+C PCR GT M+++MER+ G Q +I+ L Sbjct: 452 MVVMDESDCMVDIAKFFLAFCQSESCGKCPPCRVGTYQMLQIMERITSGEGQPGDIERLE 511 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQYHRCN 423 ++ + + ++C LG +A P+ ++ FR EE I D+Y R N Sbjct: 512 KLIETVGEGSLCGLGRSAPNPVATTLRYFREEYEEHIHDKYCRAN 556 >gi|300245619|gb|ADJ93867.1| putative aromatic-degrading protein [Clostridia bacterium enrichment culture clone BF] Length = 634 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 154/421 (36%), Positives = 240/421 (57%), Gaps = 7/421 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 +Q + + + ++ ++R + + K L ++ EVK S LRGRGGAGF TG Sbjct: 140 EQKVVLADCGLIDPDNIDHYLARDGYAALAKALTGKPAAVVAEVKDSKLRGRGGAGFPTG 199 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + P Y++ NADE +PG DR ++ PH ++EG ++A++A+GA+ +I Sbjct: 200 IKWETCMNA-AGSPKYVICNADEGDPGAFVDRALLESNPHQMLEGLILAAYAVGANEGYI 258 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLES 181 YVR E+ L A+++ GLLG S LG +++DI V G+GA++CGEETAL+ S Sbjct: 259 YVRAEYPLAITRLHTAIEQAREKGLLG-ESILGSDFNLDITVFQGSGAFVCGEETALIAS 317 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG G P +PPFPA GL G PT +NNV++++ +P I+R GA W+ G + GT + Sbjct: 318 IEGNAGIPTHRPPFPAVSGLRGKPTIINNVKTLSYIPNIIRNGADWFKSIGTPGSPGTAV 377 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G V E M T L+ GI+ AV GG S CLP + Sbjct: 378 FALAGKVVGTGLAEVPMGTTIRTLVYDVGNGIKND-KQFKAVQIGGPSGGCLPESAIDLP 436 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I D+D LKE G+ +G+ ++V+D +++ F +HESCG+CT CR GT M+ + Sbjct: 437 I-DFDSLKEAGAMMGSGGMVVLDEDDCMVEIARFFLEFTQHESCGKCTFCRLGTKQMLDI 495 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + + +G + +IDLL+E++++I+ ++CALG A P+ I+ FR E I Q R Sbjct: 496 LTDITQGRGKPEDIDLLWELAEDIKIGSLCALGKTAPNPVLTTIRFFRNEYEAHI-QEGR 554 Query: 422 C 422 C Sbjct: 555 C 555 >gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus obeum A2-162] Length = 623 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 155/420 (36%), Positives = 242/420 (57%), Gaps = 8/420 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K + +I+EV SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGNIDAESIDEYIAAGGFQAMAKAFFDMSPQEVIDEVTKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + ++ Y+V N DE +PG D +M +P+ +IEG VIA++A+GA Sbjct: 196 GFPAGKKWSQVARQ-KEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176 +IYVR E+ + L+ A+++ A GLLG N LG ++ +H GAGA++CGE + Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNI-LGSGINFHLHINRGAGAFVCGEGS 313 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 314 ALTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGS 373 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK FS++G + +E M + +I GG++ G V GG S CL Sbjct: 374 PGTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIED 432 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q+ +D+D +K + + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 433 QIDRP-LDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTK 491 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+V+G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 492 RMLEILERIVEGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHI 551 >gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519] gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii] Length = 576 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 165/419 (39%), Positives = 244/419 (58%), Gaps = 7/419 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 L Q R+ N + +S+ D ++ G ++ + E K +D +I+E+K SGLRGRGGAG Sbjct: 90 LEKQPRVVLRNCGVINPESIDDYINIGGYEAIKNCYESKSQDAVIDEIKKSGLRGRGGAG 149 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW K + Y+V NADE +PG DR ++ +PH LIEG +I FAIGA Sbjct: 150 FPTWFKWDAAKKSAGQK-KYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMMICGFAIGAD 208 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETA 177 +YVR E+ LQ A+++ G LG N G + + + GAGA++CGEETA Sbjct: 209 EGIVYVRAEYPLAILRLQKAIEDATERGFLGENIFGIPGRNFSLRIKAGAGAFVCGEETA 268 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A VP I++ G ++ +G E +R Sbjct: 269 LIASLEGERGMPRLKPPFPAQKGYWQLPTNINNVETFANVPWIIKNGGEAFAKYGIETSR 328 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M I+ E+I GGI G AV GG S C+PA + Sbjct: 329 GTKVFALTGKVKKGGLVEVPMGISLKEIIYGVGGGIVGDRP-FKAVQLGGPSGGCVPA-E 386 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + + G+ +G+ ++VMD +T ++ F ESCG+CT CR GT Sbjct: 387 LIDTKVDYESITKTGAIVGSGGMVVMDDTTCMVDMARFFLDFTCKESCGKCTYCRLGTKR 446 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ G ++ +I+LL E+S ++ ++C LG A P+ IK FR E+ I Sbjct: 447 MLEILERITAGEGREGDIELLEELSYKVKDGSLCGLGQTAPNPVLTTIKYFRNEYEDHI 505 >gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 629 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 243/416 (58%), Gaps = 9/416 (2%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 NL + + D ++ G + + K+L E + +I EVK SGLRGRGGAGF TG+KW Sbjct: 140 NLGKINPMDIEDYLAVGGYTALAKVLTEMTPEEVIEEVKKSGLRGRGGAGFPTGVKWEGA 199 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC--AFIYVRG 127 + R +++ N DE +PG D +M +PH++IEG +I ++AIG +C +IYVR Sbjct: 200 RRAPGAR-KFVICNGDEGDPGAFMDASLMEGDPHSVIEGMIICAYAIG-NCREGYIYVRE 257 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ + L A+++ A G LG + G+ DI + GAGA++CGE T L+ S+EGK+ Sbjct: 258 EYPLAVKRLSIALEQARAWGFLGEDILGTGFSFDIQLKKGAGAFVCGESTTLMMSIEGKR 317 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 PR+ PP GL+G PT +NNVE+ A +P I+ +G WY+ +G E ++GTK F I+G Sbjct: 318 PSPRVTPPRSVEKGLWGMPTCLNNVETFANIPIIILKGGEWYAQYGTETSKGTKAFCITG 377 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V +E M +T E+++K GG+ L AV GG S C+P + + DY+ Sbjct: 378 KVRNTGLIEVPMGMTLREIVQKLGGGML-EEAQLKAVQTGGPSGGCIPEEYLDTPV-DYE 435 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L +GS +G+ ++V+D T +++ F + ESCG+C PCR GT M++++ R+V Sbjct: 436 SLTRLGSMMGSGGMVVVDEGTCMVEFARFFLNFTQQESCGKCPPCRIGTYEMLQILNRIV 495 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 G Q+ +I+LL E+ + I+ ++C LG +A P+ IK FR E I + RC Sbjct: 496 AGEGQEGDIELLEELGRKIKETSLCGLGQSAPNPVLSTIKYFREEYEAHIRE-KRC 550 >gi|118594391|ref|ZP_01551738.1| formate dehydrogenase, beta subunit [Methylophilales bacterium HTCC2181] gi|118440169|gb|EAV46796.1| formate dehydrogenase, beta subunit [Methylophilales bacterium HTCC2181] Length = 515 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 159/411 (38%), Positives = 235/411 (57%), Gaps = 6/411 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ ++D ++ + K +E I+NEV SGLRGRGGA F Sbjct: 99 LKNQERLTFARVGITDPLDINDYEKHAGFNGLRKAIELEPQLIVNEVTDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S + Y+V NADE + GT DR IM ++P LIEG +IA A+GA Sbjct: 159 PTGIKWQTVLNTPS-KTKYIVCNADEGDSGTFSDRMIMENDPFVLIEGMIIAGMAVGAEY 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +E L A++ G LG+N GY+ D+ V AGAYICGEET+LL Sbjct: 218 GYIYLRSEYPDAQEVLNKAINIAKEKGFLGNNILSSGYNFDLEVTRAAGAYICGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GLYG PT VNNV ++A VP I+ +GAS+Y+ FG ++GT Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLYGKPTAVNNVITLATVPIIMDKGASFYADFGMGRSKGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E++ I+ EL+ GG G + + AV GG LP GQ Sbjct: 338 LPIQLAGNLKQTGLIEKAFGISLRELLYDFGGGSFTG-NPIKAVQVGGPLGAFLPEGQFD 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ E+ + +G ++ D +TD+ K F ESCG+CTPCR G+ M Sbjct: 397 -TPLDYEKFSEINAVVGHGGIVAFDDTTDMAKMARYSFEFCAIESCGKCTPCRIGSTRGM 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 V++++ GI Q + LL ++ + + ++CA+G +P+ + NF P Sbjct: 456 EVIDKIKGGIDQDKNEKLLRDLGETMVNGSLCAMGGMTPFPVISAL-NFFP 505 >gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 597 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 156/419 (37%), Positives = 253/419 (60%), Gaps = 6/419 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58 + Q RI N + S+++ ++RG + + K+L+ + ++NE+K SGLRGRGG Sbjct: 111 LFRKQHRIALRNCGMMDPDSVNEYIARGGYSGLAKMLDTMQPAEVVNEIKESGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW F K S++ Y++ NADE +PG DR ++ +PH+++EG +IA +AIGA Sbjct: 171 GFPTATKWEFCSKAKSNK-KYIICNADEGDPGAFMDRSLLEGDPHSVLEGMIIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 ++Y+R E+ + ++ A+++ GLLG N G+++++ + GAGA++CGEETA Sbjct: 230 DEGYLYIRAEYPLAIKRIRNAINQAKELGLLGENILGSGFNMELKIKEGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE++A +P I+ +GA ++ G + ++ Sbjct: 290 LIASIEGERGVPRSRPPFPAIKGLFGKPTIINNVETLANIPYIIDQGAQTFASVGTDKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M I+ E++ + GG G AV GG S CLP + Sbjct: 350 GTKVFALTGKVKNSGLVEVPMGISVREIVYEIGGGTFEG-KKFKAVQTGGPSGGCLPESK 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DYD L G+ +G+ ++VMD + +I F + ESCG+CTPCREGT Sbjct: 409 LDLPI-DYDSLASAGTIMGSGGLVVMDEDSCMIDVAKYFLTFTRKESCGKCTPCREGTMR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++E++ G + ++D L ++K I+ +C LG A PI ++ FR E I Sbjct: 468 LLEMLEKITAGEGEMADLDRLERLAKTIKTSALCGLGQTAPNPILSTLQYFRKEYETHI 526 >gi|91200367|emb|CAJ73413.1| strongly similar to NADH dehydrogenase I chain F [Candidatus Kuenenia stuttgartiensis] Length = 427 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 155/396 (39%), Positives = 233/396 (58%), Gaps = 8/396 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEV-KASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +L + G + + K+L++ + + ++ K S LRGRGGAGF TGMKWSF+P + D P Sbjct: 20 NLKEYEQAGGYQALRKVLKEMQPQDVQKIIKDSNLRGRGGAGFPTGMKWSFVP-LGDDAP 78 Query: 78 H--YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YL+ NADE EPG KDR ++ PH LIEG +IA++AI A+ +++ +R + E Sbjct: 79 KDKYLICNADEMEPGAFKDRLLLEGNPHQLIEGMIIAAYAIQANKSYVVLRWAYKEAAEL 138 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ E +G +G N GY +++ +H G YI GEETA LE+LEGK+ PR KPP Sbjct: 139 IFKALAEAEQAGYIGQNILGSGYALELYLHTSIGRYIRGEETAHLEALEGKRAIPRSKPP 198 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 + A GL+G PT VNNVE++ V I+ G+ W+ GTK++ +SG V P T Sbjct: 199 YSAVSGLFGKPTIVNNVETLCCVSHIVNNGSEWFKNLSLNGVGGTKIYGVSGRVKNPGTW 258 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + + E+I +H GG++ G+ L ++PGG+S L + MDY +++ GS Sbjct: 259 ELPLGTSMREIIFEHAGGMKEGF-RLKGILPGGASTDFLTEEHLD-VNMDYSSVEKAGSR 316 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT +I++D T + + L F+ ESCG CTPCREG W+ +++ + +G + + Sbjct: 317 LGTGTLIILDDKTCPVGMVHNLEHFFAQESCGWCTPCREGLPWVEKILLSIEEGKGKLED 376 Query: 375 IDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFR 409 +D+L + N+ GRT CAL A P+Q IK FR Sbjct: 377 LDILSFHAVNLGPGRTFCALAPGAVEPLQSSIKYFR 412 >gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM 10507] gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM 10507] Length = 584 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 L+ Q R+ GL + + + +++G ++ K++ +D +I VK SGLRGRGGA Sbjct: 99 FLSQQRRVVLRNCGLINPEKIDEYIAKGGYEAAKKVITTMTQDEVIEVVKVSGLRGRGGA 158 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ + K + Y+V NADE +PG DR ++ +PH+L+EG +I FA GA Sbjct: 159 GFPTWFKWNAI-KSNAGAQKYMVCNADEGDPGAFMDRSVLEGDPHSLLEGMIIGGFAAGA 217 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 IY R E+ L+ A+++ G LG N + DI + GAGA++CGEETA Sbjct: 218 TEGVIYCRAEYPLAIARLEIAMEQAREKGFLGKNLFGTDFSFDIRIKAGAGAFVCGEETA 277 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A VP I G ++ G ++ Sbjct: 278 LIASLEGERGMPRLKPPFPAAKGYWKLPTNINNVETYANVPWIFANGGEAFAAMGTAQSK 337 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M + E+I GGI+ N AV GG S C+PA Q Sbjct: 338 GTKVFALAGKIKKGGLVEVPMGLPLKEVIYGIGGGIKND-KNFKAVQMGGPSGGCIPA-Q 395 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + Y+ + + G+ +G+ +IVMD +T ++ F K ESCG+C CR GT Sbjct: 396 LIDTPVTYEDINKTGAIVGSGGMIVMDENTCMVDMARYFLDFTKKESCGKCNYCRIGTKR 455 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +I+LL E++ I+ +C LG A P+ I+ FR E+ I Sbjct: 456 MLEILERITRGEGKDGDIELLEELAGKIKDGAMCGLGQTAPNPVLTTIRYFRNEYEDHIY 515 Query: 418 QYHRCN 423 H C Sbjct: 516 N-HTCT 520 >gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein [Rhodoferax ferrireducens T118] gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Rhodoferax ferrireducens T118] Length = 603 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 153/390 (39%), Positives = 224/390 (57%), Gaps = 22/390 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESE 88 + + L +G D + E+K S LRGRGGAGF+TG+KW ++C P H +V NADE E Sbjct: 196 LTQSLARGADATLAEIKRSNLRGRGGAGFATGLKW----ELCRQAPGTEHIVVCNADEGE 251 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++ + + EG +A+ +GA F+Y+RGE+ E LQA + A L Sbjct: 252 PGTFKDRVLLSRQADAVFEGMTVAAHVLGARRGFLYLRGEYRFLLEPLQAVLQRRRAEQL 311 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG++ + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA G G PT Sbjct: 312 LGTHILGQAGFDFDIAIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLGHPT 371 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVE+ V I + G + ++G G + GTK+ S+SG P E + L+ Sbjct: 372 LVNNVETFCAVAHIAQHGGALWAGIGTPKSTGTKIHSVSGDCARPGLYEYPLGTPVSRLL 431 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 CG + AV GG S CL A + I ++ + G A +V DRS Sbjct: 432 AD-CGA-----RDTQAVQVGGPSGVCLAADEFERRIA-FEDVPTAG------AFMVFDRS 478 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 D+ + + F+ HESCG CTPCR GT +++ M++L G + ++D+L+E+ + + Sbjct: 479 RDMFEVARGFAHFFAHESCGFCTPCRVGTALLVKRMDKLAGGHGSRDDLDVLFELDRLLH 538 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 T C LG +A P++ + FRP E+R+ Sbjct: 539 STTHCGLGASACNPLRDTVLKFRPAYEQRL 568 >gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 626 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 151/388 (38%), Positives = 226/388 (58%), Gaps = 10/388 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G ++ + + +E G ++ E+K S L GRGGA F TG+KW + RPH Sbjct: 221 SLDDYRAHGGYEALRRAVELGASRVVRELKDSALTGRGGAAFPTGVKWEGV-ATAQVRPH 279 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADESEPGT KDR +M ++P L+E IA +A G ++Y+RGE+ L+ Sbjct: 280 YLVCNADESEPGTFKDRVLMEYDPFGLVEAMTIAGWATGCERGYLYIRGEYPLATRRLEH 339 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E G LG++ G+ DI + GAGAYICGEETALL S+EG +G+PR KPPFP+ Sbjct: 340 AIEEARRRGFLGADVLGEGFTFDIELRRGAGAYICGEETALLNSIEGFRGEPRNKPPFPS 399 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT +NNVE++ V +L G ++ G E + GTKLF ++G V P E Sbjct: 400 VSGLFGKPTVINNVETLYNVLQVLDVGGPAFASVGAERSTGTKLFCVAGSVAVPGVYEVE 459 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T EL+ GG+RG L ++ GG++ + Q+ + +G +E+G+ LG+ Sbjct: 460 FGTTLRELL-TLAGGLRG---ELRTILLGGAAGGFVMPDQL-DVPLTLEGAREIGATLGS 514 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA---QKRE 374 V+ D D++ + R++ F++ ESCGQC PCR GT + RL +G ++ E Sbjct: 515 GVVLAFDTDADLVATLRRIAAFFRDESCGQCVPCRVGTVRQEEALARLERGAPLGDRETE 574 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQ 402 + LL ++++ + +IC LG A +Q Sbjct: 575 LALLDDLARVMRDASICGLGQTAPAAVQ 602 >gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] Length = 590 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 163/424 (38%), Positives = 247/424 (58%), Gaps = 13/424 (3%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFST 62 Q RI + G + +SL ++ + ++K ++ + + EVK SGLRGRGG GF T Sbjct: 110 QRRIVMSGCGQIDAESLDAYLATDGFKAIEKCIKTMKPAEVTEEVKKSGLRGRGGGGFPT 169 Query: 63 GMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 G+KWSF C+ P Y++ NADE +PG DR I+ +P+ LIEG +IA +AIGA Sbjct: 170 GLKWSF----CAASPGHHKYIICNADEGDPGAFMDRSILEGDPYCLIEGMMIAGYAIGAQ 225 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 ++YVR E+ + LQ A+D CY G LG N LG++ D+ + GAGA++CGEETAL Sbjct: 226 FGYVYVRAEYPLAIDRLQKAIDVCYEKGYLGKNCMGLGFEYDMRIKKGAGAFVCGEETAL 285 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++G PR +PPFPA GL+ P+ +NNVE+ A V I+ GA WY+ G E +G Sbjct: 286 MASIEGERGMPRPRPPFPAVKGLWQHPSNINNVETFANVRHIINNGAEWYAAIGTETTKG 345 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V + VE + E+I CGGI AV GG S C+PA ++ Sbjct: 346 TKIFAVTGKVKHTGLVEVPAGMKVREVIYDVCGGILNN-RKFKAVQAGGPSGGCIPA-EI 403 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G M Sbjct: 404 LDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVSKFFLTFTRMESCGKCVPCRIGLKAM 463 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ R+ +G ++ +++ L ++ I+ ++C LG A P+ I+ FR E I Sbjct: 464 LDILIRITEGNGREGDLETLIDLGTTIKQASLCGLGQTAPNPVLSTIRYFRDEYEAHITD 523 Query: 419 YHRC 422 RC Sbjct: 524 -KRC 526 >gi|88602558|ref|YP_502736.1| NADH dehydrogenase (quinone) [Methanospirillum hungatei JF-1] gi|88188020|gb|ABD41017.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Methanospirillum hungatei JF-1] Length = 562 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 221/371 (59%), Gaps = 6/371 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D II+EVK SGLRGRGGAGF G+KW K + ++V NADE +PG +R+ M Sbjct: 185 DAIIDEVKRSGLRGRGGAGFPAGLKWEITKKAPGEE-KFIVCNADEGDPGAYMNRNEMES 243 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH L+EG +I ++A+G IY+R E+ E L A+D+ GLLG N G+D Sbjct: 244 DPHMLLEGMLIGAYAMGVSEGLIYIRAEYPLAIERLMLALDQARTYGLLGKNIFNTGFDF 303 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGA++CGE TAL S+EGK G+PRL+PP G++G PT +NNVE+ VP Sbjct: 304 DIRIATGAGAFVCGESTALAASIEGKTGRPRLRPPRLTEKGVFGKPTDLNNVETWCNVPV 363 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI-EKHCGGIRGGWD 278 I+ +GA WYS G + N GTK+FS+ G V+ VE + + +I + GG G Sbjct: 364 IIAKGALWYSSIGAKGNTGTKVFSLVGKVDNIGMVEVPLGTSLHSIIYDIGNGGALG--K 421 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 + AV GG S C+P ++ +D++ L ++G+ +G+ ++VMD T+++ Sbjct: 422 EVKAVQTGGPSGGCIPV-RLFDTPVDFESLNQVGTMMGSGGLVVMDEDTNMVDIARYFIN 480 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F ESCG+C PCREG M+ ++ R+V G +++I LL E+++ ++ ++C LG A Sbjct: 481 FASGESCGKCVPCREGLKHMLLILNRIVAGKGTRQDIGLLRELAETVQKTSLCGLGQTAP 540 Query: 399 WPIQGLIKNFR 409 P+ ++ F+ Sbjct: 541 NPVLTTMQYFK 551 >gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] Length = 622 Score = 275 bits (703), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 148/413 (35%), Positives = 242/413 (58%), Gaps = 9/413 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + ++ G ++ ++K+L + ++ ++E+ SGLRGRGGAGF TG KW Sbjct: 144 VLKNCGHIDAEHIEEYIAVGGYEGLEKVLFDMTKEEGLDEILKSGLRGRGGAGFPTGRKW 203 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K + Y+V N DE +PG DR IM +PH +IEG +I ++ +GA +IYVR Sbjct: 204 AEVAKQ-PVKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMIIGAYLVGAQNGYIYVR 262 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E L+ A+ + GLLG N G++ + ++ GAGA++CGE +AL S+EG Sbjct: 263 AEYPLAVERLKIAIAQAEERGLLGDNILGSGFNFRLHINRGAGAFVCGEGSALTASIEGN 322 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP A GL+ PT +NNVE+ A VP I+ G+ WY GFG E + GTK F+++ Sbjct: 323 RGMPRVKPPRSAEKGLFERPTVLNNVETYANVPMIIANGSDWYRGFGTEGSPGTKAFALT 382 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL--LAVIPGGSSVPCLPAGQMRGAIM 303 G VN +E M T E++ GG++ DN+ AV GG S CL + + Sbjct: 383 GSVNNTGLIEVPMGTTLREIVYDIGGGVK---DNVPFKAVQIGGPSGGCLVEKHLD-LPL 438 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D +K++ + +G+ ++VMD ++ ++ F + ESCG+CTPCR GT M+ +++ Sbjct: 439 DFDSVKKLNAIMGSGGLVVMDENSCMVDVARFFMSFTQRESCGKCTPCRIGTKRMLEILD 498 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ +G ++D L E + + ++C LG +A P+ ++ FR EE I Sbjct: 499 KITEGKGTLEDLDKLEETANTVRTMSLCGLGKSAPLPVISTLELFRHEYEEHI 551 >gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta thermophila DSM 6578] Length = 595 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 151/403 (37%), Positives = 232/403 (57%), Gaps = 5/403 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + +++ ++R + ++K+L E D +I E+K SGLRGRGGAGF T KW Sbjct: 117 VLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKKSGLRGRGGAGFPTWRKW 176 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F + D Y+V NADE +PG DR ++ +PH+++E +IA + AH +IYVR Sbjct: 177 LFTMQA-KDDVKYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVEAHKGYIYVR 235 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ L A+++ GLLG + G+ DI + GAGA++CGEETALL S+EG Sbjct: 236 AEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETALLASIEGS 295 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA GL+G PT +NNVE++A +P I+ RG W++ G E ++GTK+F+++ Sbjct: 296 RGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSKGTKVFALT 355 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN VE M T +++ GGI G AV GG S +P + I DY Sbjct: 356 GKVNNSGLVEVPMGTTLRDIVFNIGGGIPNG-KKFKAVQTGGPSGGVIPEEYLDTPI-DY 413 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L+++GS +G+ +IVMD ++ F ESCG+C PCR G + +++R+ Sbjct: 414 ENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRKLYNILDRI 473 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 KG +ID + E+S ++ ++C LG A P+ + F Sbjct: 474 SKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYF 516 >gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 613 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 157/409 (38%), Positives = 247/409 (60%), Gaps = 9/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTG 63 Q TN + + + + ++ G + + + L + + +I+EVK SGLRGRGG GF TG Sbjct: 133 QQIALTNCGQINPEDIEEYLAVGGYQALGEALTGMKPEEVIDEVKESGLRGRGGGGFPTG 192 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F + D+ Y++ NADE +PG DR I+ +PH ++EG +IA +A+G+ +I Sbjct: 193 LKWQFAQESEGDK-KYIICNADEGDPGAFMDRSILEGDPHKVLEGMIIAGYAVGSDEGYI 251 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180 YVR E+ + L+ A+ + GLLG N ++ +D++I GAGA++CGEETAL+ Sbjct: 252 YVRAEYPLAVKRLREAISQAREYGLLGENLFGTEFSFDINI--KEGAGAFVCGEETALIA 309 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G P+ +PP+PA GL+G PT +NNVE+ A + TI+ GA +S G E ++GTK Sbjct: 310 SIEGRRGMPQSRPPYPAQEGLWGKPTNINNVETYANISTIITEGAESFSSVGTEESKGTK 369 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N VE M IT +E+I GGI G D AV GG S CLP ++ Sbjct: 370 VFALAGKINNTGLVEVPMGITVEEIIYDIGGGIPGDKD-FKAVQIGGPSGGCLPEEKLHL 428 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I DYD L E G+ +G+ ++VMD T ++ F ESCG+C PC EGT M+ Sbjct: 429 PI-DYDSLLEAGAMMGSGGLVVMDEDTCMVDVARYFLDFTVSESCGKCAPCSEGTKRMLD 487 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ER+ G ++ +++ L ++++ I+ ++C LG A P+ +K FR Sbjct: 488 ILERITDGNGKQEDLEQLEKLAEVIKDTSLCGLGQTAPNPVLSTLKYFR 536 >gi|325261423|ref|ZP_08128161.1| protein HymB [Clostridium sp. D5] gi|324032877|gb|EGB94154.1| protein HymB [Clostridium sp. D5] Length = 1042 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 156/409 (38%), Positives = 240/409 (58%), Gaps = 6/409 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 ++ SL ++R + + K+L ++ ++ +K SGLRGRGGAGF TG+KW K Sbjct: 156 MEFSSLEAYIARDGYGAIAKVLGGMSQEDVVAVIKNSGLRGRGGAGFPTGVKWEAGRKAQ 215 Query: 74 S-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 S D ++V NADE +PG DR ++ +PH++IEG ++ +AIGA +IYVR E+ Sbjct: 216 SPDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIGASRGYIYVRAEYPIA 275 Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 E L A+D+ A+G+LG N G+D D+ + GAGA++CGEET+LL S+EG++G+PR Sbjct: 276 VERLGNAIDQARAAGILGKNIMGSGFDFDVEIRIGAGAFVCGEETSLLASIEGRRGEPRQ 335 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFP GL+ CPT +NNVE++A V I+ G+ WY G + GTK+F+++G + Sbjct: 336 KPPFPFEKGLFECPTIINNVETLANVAPIILNGSEWYRKIGTAGSAGTKVFALAGDIVNA 395 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M ++I K GG G A+ GG S CL + + DYD L E+ Sbjct: 396 GIIEVPMGTVLGDIIYKI-GGGIIGGKRFKAIQSGGPSGGCLTRAHLNTRV-DYDSLAEL 453 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ ++VM+ T ++ F ESCG+C PCR GT M+ ++E + +G + Sbjct: 454 GAIMGSGGLVVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTRRMLELLEGITEGKGR 513 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQY 419 ++DLL E+++ I+ +C LG A P+ +K FR E I D+Y Sbjct: 514 PEDLDLLEELAETIKQTAMCGLGQTAPNPVLSTLKYFRGEYESHIYDKY 562 >gi|320354167|ref|YP_004195506.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Desulfobulbus propionicus DSM 2032] gi|320122669|gb|ADW18215.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Desulfobulbus propionicus DSM 2032] Length = 538 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 242/416 (58%), Gaps = 9/416 (2%) Query: 7 RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFS 61 R N+ L G+ S+ D ++ G + V + L + R +I V+ SGLRGRGGAG+ Sbjct: 115 RQHKNVLALSGRIDPESVDDYLAAGGYLAVVQALTEMRPSDVIRRVQESGLRGRGGAGYP 174 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW+ + K ++ YL+ NADE +PG DR I+ PH ++EG +IA++A+GA Sbjct: 175 TGLKWATVAKATGEK-KYLICNADEGDPGAFMDRSILESTPHAVLEGMIIAAYAVGATSG 233 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ + L+ A+ E LG + D+DI + GAGA++CGEETAL++ Sbjct: 234 YIYVRAEYPLAVKRLKLAIREAERLNFLGHAVCGSSLDLDIQLRLGAGAFVCGEETALIQ 293 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G PR +PP+PA GL+G PT +NNVE+ A VP I+ G + G E ++GTK Sbjct: 294 SVEGKRGIPRPRPPYPAEQGLWGRPTLINNVETYANVPPIIAHGPEKLAALGTEQSKGTK 353 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G + +E M ++ E++ GGI GG L AV GG S C+PA + Sbjct: 354 VFALTGKIRNSGLIEVPMGMSLREIVFDIGGGIPGG-HALKAVQTGGPSGGCIPAEHLDT 412 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + ++ L+ +GS +G+ +IV+D +T+++ + F ESCGQCTPCR GT + Sbjct: 413 PV-SFESLRALGSIMGSGGMIVIDETTNMVDIVKYFMEFSMDESCGQCTPCRVGTAQIHH 471 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ + A ++ L + ++ ++C LG +A P+ ++ FR +RI Sbjct: 472 LLTLFQQSRATLLDLAKLEALCDLVKNTSLCGLGQSAPNPVLSTLRYFRQEYLDRI 527 >gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 595 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 157/395 (39%), Positives = 238/395 (60%), Gaps = 10/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 ++ + ++R + + K+L ++ +INEVKASGLRGRGG GF TG+KW F K +D+ Sbjct: 130 NIEEYIARDGYAALAKVLTMTQEEVINEVKASGLRGRGGGGFPTGLKWEFAYKNKADQ-K 188 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE +PG DR I+ +P++++E I +AIGA +Y+R E+ + L++ Sbjct: 189 YVVCNADEGDPGAFMDRSILEGDPNSIVEAMAICGYAIGATKGLVYIRAEYPLAIKRLES 248 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ GLLG N S +D+DI GAGA++CGEETAL+ S+EG +G+P KPPF Sbjct: 249 AIHSAREYGLLGDNIMGSDFCFDIDI--RFGAGAFVCGEETALIHSMEGMRGEPTTKPPF 306 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G +G PT VNNVE+ A +P I+ +GA W+S G E ++GTK+F+++G +N +E Sbjct: 307 PAASGYWGKPTNVNNVETFANIPVIILKGAEWFSKIGTEKSKGTKVFALAGKINNVGLIE 366 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT E+I GGI+ G AV GG S CL + I D+D L GS + Sbjct: 367 VPMGITLREVIYDIGGGIKNG-KQFKAVQTGGPSGGCLTVKDLDTPI-DFDNLIAKGSMM 424 Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 G+ +IV+D D + A+ + + F ESCG+CTPCR GT ++ ++E++ G + + Sbjct: 425 GSGGMIVLDED-DCMPAVAKFYLEFTAEESCGKCTPCRIGTKRLLEILEKITAGKGSEED 483 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +L E+S+ I+ +C LG A P+ + F Sbjct: 484 LKVLKELSEVIKDTALCGLGQTAPNPVLSTLTTFE 518 >gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] Length = 599 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 166/422 (39%), Positives = 247/422 (58%), Gaps = 7/422 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 Q RI N + + + + ++ + ++K+L K +I+EVKASGLRGRGG GF T Sbjct: 115 QKRIALANCGVIDPEDIEEYIAFDGYMALEKVLFKMTPQEVIDEVKASGLRGRGGGGFPT 174 Query: 63 GMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KW F S D ++ NADE +PG DR ++ +PH LIE IA++AIGA Sbjct: 175 GLKWQFAYNADSPDGVKFVACNADEGDPGAFMDRSVLEGDPHRLIEAMAIAAYAIGAQKG 234 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVR E+ + LQ A+D+ GLLG N + D+ + GAGA++CGEETAL+ Sbjct: 235 YVYVRAEYPIAVKRLQIAIDQAKDYGLLGDNVFDTDFSFDLEIRLGAGAFVCGEETALMN 294 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PR +PPFPAN GL+ PT +NNVE+ A +PTI+ GA ++ G E ++GTK Sbjct: 295 SVEGKRGEPRPRPPFPANKGLFERPTVLNNVETYANIPTIILEGAESFASVGTEKSKGTK 354 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F++ G +N +E M T E+I + GGI G A GG S C+P+ ++ Sbjct: 355 VFALGGKINNTGLLEIPMGTTLREVIYEIGGGIPNG-KAFKAAQTGGPSGGCIPSSELDI 413 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I DYD L +G+ +G+ +IVMD ++ F + ESCG+C PCR GT M+ Sbjct: 414 PI-DYDNLISIGAMMGSGGLIVMDEDNCMVDVARFFLDFTQDESCGKCPPCRIGTKRMLE 472 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ G ++ +I+ L E+++ I+ +C LG A P+ IK FR E I + Sbjct: 473 ILERICDGQGEEGDIERLEELAEGIKASALCGLGQTAPNPVLSTIKYFRDEYEAHIYE-K 531 Query: 421 RC 422 RC Sbjct: 532 RC 533 >gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 572 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 167/425 (39%), Positives = 250/425 (58%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58 + Q+RI N + S+ + + R + + K L + R ++ E+K SGLRGRGGA Sbjct: 136 LFKKQERIVLRNTLYIDPLSIEEYIGRDGYAALAKALTRMRPGEVVEEIKRSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTGMKWSF + P Y+V N DE +PG DR ++ +PH++IEG I AIGA Sbjct: 196 GFSTGMKWSF-SAAAAGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGRAIGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ E L+ A+ + GLLG + G++ DI + GAGA++CGEETA Sbjct: 255 EQGYVYVRAEYPLAIERLEHAIRKAREFGLLGKDIFGTGFNFDIEIRIGAGAFVCGEETA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR +PPFPA G++G PT +NNVE+ A +P I+ +GA W++ G ++ Sbjct: 315 LLASVEGRRGEPRPRPPFPAIEGVFGKPTVINNVETWANIPAIIFKGADWFASIGTPKSK 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M T E++ GGI + AV GG S C+PA Sbjct: 375 GTKVFALAGKITNTGIVEVPMGTTLREMVFDIGGGIPKKKE-FKAVQTGGPSGGCIPARH 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DYD L +G+ +G+ +IVMD+ T ++ F ESCG+C+PCR GT Sbjct: 434 LDTPI-DYDSLGALGAIMGSGGMIVMDQDTCMVDIAKFFLEFCVDESCGKCSPCRIGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ER+ G ++ +I+LL E++ I+ +C LG A P+ I+ FR E+ I Sbjct: 493 MHEILERISTGHGREGDIELLVELATTIKTTALCGLGQTAPNPVLSTIRYFRDEYEQHI- 551 Query: 418 QYHRC 422 + H C Sbjct: 552 RDHVC 556 >gi|290956204|ref|YP_003487386.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22] gi|260645730|emb|CBG68821.1| putative respiratory chain oxidoreductase [Streptomyces scabiei 87.22] Length = 610 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 158/387 (40%), Positives = 218/387 (56%), Gaps = 18/387 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SL D + G + + + G +I EV SGL GRGGA F TG KW D+P Sbjct: 220 SSLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQATASQ-PDQP 278 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 HYLV NADESEPGT KDR ++ +P +L+E IA +A GAH ++Y+RGE+ R L+ Sbjct: 279 HYLVCNADESEPGTFKDRVLLEGDPFSLVEAMTIAGYATGAHRGYLYLRGEYPRALRRLE 338 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + A GLLG + GY DI + GAGAYICGEETAL S+EG +G+PR KPPFP Sbjct: 339 NAIAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYRGEPRSKPPFP 398 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT NNVE++ V IL GA Y+ G + G KLF +SG V+ P E Sbjct: 399 VEKGLFGKPTVENNVETLVNVLPILALGAPAYASIGTARSTGPKLFCVSGSVDRPGIYEL 458 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMG 312 +L+ G+R D L AV+ GG++ G +R +D ++G +E G Sbjct: 459 PFGAALGDLLT--LAGVR---DRLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAG 508 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIA 370 + LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ + G A Sbjct: 509 TTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIAERTGAA 568 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAA 397 +I LL EV + + +IC LG A Sbjct: 569 AAGDIALLREVGRAMRDASICGLGQTA 595 >gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Halanaerobium praevalens DSM 2228] Length = 601 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 159/415 (38%), Positives = 245/415 (59%), Gaps = 6/415 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +++ + ++ G ++ K+L E +++ VK SGLRGRGG GF T Sbjct: 117 QQRIALANCGQIDPEAIDEYIALGGYEAAGKVLTEMDAQEVVDTVKDSGLRGRGGGGFPT 176 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F D+ Y++ NADE +PG DR I+ +PH +IEG +IA++ IGA + Sbjct: 177 GLKWQFAKNSDGDK-KYVICNADEGDPGAFMDRSILEGDPHRVIEGMLIAAYGIGADEGY 235 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 +Y R E+ + L+ A+ + GLLG N +D + + GAGA++CGEETAL+ S Sbjct: 236 VYARAEYPLAIKRLEKAIKDAEEYGLLGKNIFSSNFDFKLHIKKGAGAFVCGEETALMNS 295 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G P +PP+PA GL+G PT +NNVE+ A +P I+ GA+ +S G E + GTK+ Sbjct: 296 IEGKRGMPIPRPPYPAKKGLWGKPTNINNVETYANIPFIINEGAAEFSKIGTEGSSGTKV 355 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G +N VE M T E+I + GG+ G AV GG S CLP + Sbjct: 356 FALTGKINNTGLVEVPMGTTLKEVIYEIGGGLNKG-KKFKAVQTGGPSGGCLPEDYLDLP 414 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DYD L + G+ +G+ ++VMD + ++ F + ESCG+CTPCREGT M+ + Sbjct: 415 I-DYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQSESCGKCTPCREGTKRMLEI 473 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + R+ +G ++ +I+LL E+ +I+ ++C LG +A P+ I+ FR E I Sbjct: 474 LNRITEGEGKEGDIELLLELGDHIKSTSLCGLGQSAPNPVLSTIRYFRDEYEAHI 528 >gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353] gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353] Length = 656 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 157/412 (38%), Positives = 240/412 (58%), Gaps = 7/412 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + ++ G + + K+L E+ + +I + S LRGRGG GF TG KW Sbjct: 177 VLKNCGHIDAEHIEEYIAVGGYQSFAKVLFEQTPNDVIETILESNLRGRGGGGFQTGYKW 236 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA +IYVR Sbjct: 237 KQVARQ-QEKIRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMLIAAYAVGAQEGYIYVR 295 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ L+ A+ + GLLG + LG D +H GAGA++CGE +AL S+EG Sbjct: 296 AEYPLAISRLRLAISQAEDRGLLGEHI-LGTDFSFHLHINRGAGAFVCGEGSALTASIEG 354 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR+KPP GL+ PT +NNVE+ A VP I+ +GA WY G EN+ GTK F++ Sbjct: 355 KRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIIEKGAKWYRSIGPENSPGTKAFAL 414 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V +E M + E+I GGI+G AV GG S CL + + +D Sbjct: 415 TGSVKNTGLIEVPMGTSLREVIYDIGGGIKGDA-KFKAVQIGGPSGGCLITPHLDVS-LD 472 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT M+ ++ER Sbjct: 473 FDSLKKMGAMIGSGGLVVMDDKTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 532 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +V G + ++DLL E++ I +C LG +AA P+ ++ FR EE + Sbjct: 533 IVAGKGTREDLDLLDELASTITDTALCGLGKSAALPVMSTLRLFRKEYEEHV 584 >gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 590 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 160/422 (37%), Positives = 247/422 (58%), Gaps = 8/422 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ D + + + K+L K + +I E++ S LRGRGGA Sbjct: 99 FLQQQLRIVLRNCGRIDPESIDDYRRQDGYSALQKVLAKMSPEEVIEEIEVSALRGRGGA 158 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + Y++ NADE +PG DR I+ +PH ++EG +IA++AIGA Sbjct: 159 GFLTGLKWK-ATREAGGLYRYIICNADEGDPGAFMDRSILEGDPHAVLEGMIIAAYAIGA 217 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176 IY R E+ + L+ A+ + GLLG LG D DI + GAGA++CGEET Sbjct: 218 EQGIIYCRAEYPLAVKRLEIAIAQARQKGLLGQRI-LGSDFSFDISIQQGAGAFVCGEET 276 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ SLEG++G PRLKPP+P+ GL+G P+++NNVE++A VP I+R G ++ G + Sbjct: 277 ALIASLEGERGMPRLKPPYPSESGLWGYPSSINNVETLANVPWIIRNGGEAFAALGSRES 336 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G + VE M T E+I GG++ G + AV GG S C+PA Sbjct: 337 KGTKVFALAGKIERGGLVEVPMGTTLREIIYGIGGGVKTG-RRIKAVQMGGPSGGCIPA- 394 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ +DY L G+ +G+ ++V+D S+ ++ F + ESCG+C CR GT Sbjct: 395 ELLDIPVDYQSLSNTGAIMGSGGMVVLDESSCMVDLARFFLDFTQKESCGKCVQCRIGTK 454 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ +G Q+ +I+LL E+S +I ++C LG +A P+ I+ FR E I Sbjct: 455 RMLEILERICQGEGQEGDIELLEELSAHISENSLCGLGQSAPNPVLTTIRYFRDEYEAHI 514 Query: 417 DQ 418 + Sbjct: 515 RE 516 >gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 604 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 165/426 (38%), Positives = 254/426 (59%), Gaps = 17/426 (3%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFST 62 Q R+ GL SL D + RG + ++K +L+ + +I E+ SGLRGRGG GF T Sbjct: 122 QTRVALRNVGLIDPSSLQDYLERGGYRTLEKSLLDMRPEQVIEEIIKSGLRGRGGGGFPT 181 Query: 63 GMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 G+KW K C+ +P Y++ N DE +PG D IM +PH+++EG +IA++A+GA Sbjct: 182 GLKW----KACAATPAQPRYIICNGDEGDPGAFMDESIMEGDPHSVLEGMIIAAYAVGAS 237 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEET 176 FIYVR E+ + SL+ A++E G LG N S L ++++I+ G GA++CGEET Sbjct: 238 NGFIYVRDEYAQSVASLRKAIEEAENHGFLGENILGSALSFNIEIV--RGGGAFVCGEET 295 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EG G+PR K FP+ GL+G PT +NNVE+ A +P I+ RGASW++ G E + Sbjct: 296 ALIASIEGNVGEPRDKYVFPSEKGLWGQPTIINNVETWANIPVIMERGASWFTSLGTEGS 355 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+FS+ G V VE M T E+I GG+ G + AV GG S C+P+ Sbjct: 356 KGTKVFSLVGKVANTGLVEVPMGTTLREIIFDIGGGVPKG-RSFKAVQTGGPSGGCIPS- 413 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ +D+D L + GS +G+ +IVMD T +++ + F ESCG+C PCREG Sbjct: 414 ELLDLKVDFDSLSQAGSMMGSGGLIVMDDRTCMVEVVRYYLSFLAGESCGKCVPCREGIK 473 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++ R+ G + +I LL ++++ ++ ++CALG A+ P+ ++ FR E I Sbjct: 474 CLLEILTRICHGQGEIGDIALLEDIAETMQQASLCALGRTASNPVLSTLRYFREEYLEHI 533 Query: 417 DQYHRC 422 + RC Sbjct: 534 EG-QRC 538 >gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] Length = 584 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/419 (36%), Positives = 241/419 (57%), Gaps = 6/419 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58 ++ Q RI N + + + + ++R + +K+L D +I+ +K SGLRGRGGA Sbjct: 98 LMKKQKRIVLRNCGSINPEEIDEYIARDGYKATEKVLTTMTDEEVIDVIKVSGLRGRGGA 157 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ + +D+ Y+V NADE +PG DR ++ +PH+L+EG +I +A+GA Sbjct: 158 GFPTWFKWNAARQNKADQ-KYIVCNADEGDPGAFMDRAVLEGDPHSLLEGMIIGGYAMGA 216 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 IYVR E+ + L+ A+ + G LG N G+D DI + GAGA++CGEETA Sbjct: 217 TEGVIYVRAEYPLAIKRLEIAIAQAKERGYLGKNIFSSGFDFDIRIKEGAGAFVCGEETA 276 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A V I+ G + G + + Sbjct: 277 LIASLEGERGMPRLKPPFPAQKGYWQKPTNINNVETYANVAWIMLNGGDTFGSMGTKTSN 336 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M I+ E+I GGI+ + AV GG S C+PA Sbjct: 337 GTKVFALAGKIKKGGLVEVPMGISLREVIYDIGGGIKEDKE-FKAVQMGGPSGGCIPASL 395 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + DY+ + + G+ +G+ +IVMD +T ++ F + ESCG+C CR GT Sbjct: 396 IDTPV-DYENINKTGAIVGSGGMIVMDETTCMVDMARYFLDFTRKESCGKCNYCRIGTKR 454 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ G + +I+LL E++ ++ +C LG A P+ +K FR E+ I Sbjct: 455 MLEILERITNGEGKDGDIELLEELAYKVKDGAMCGLGQTAPNPVITTLKYFRHEYEDHI 513 >gi|255994340|ref|ZP_05427475.1| protein HymB [Eubacterium saphenum ATCC 49989] gi|255993053|gb|EEU03142.1| protein HymB [Eubacterium saphenum ATCC 49989] Length = 593 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +T Q RI GL + + D +S G ++ L EK + +I E+K SGLRGRGGA Sbjct: 108 FITRQQRIVLRNCGLINPEKIEDYISEGGYEAARIALTEKTPEEVIEEIKKSGLRGRGGA 167 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ +D+ Y+V NADE +PG DR ++ +PH L+EG +I +AIGA Sbjct: 168 GFPTWFKWNAARSNEADQ-KYIVCNADEGDPGAFMDRSVLEGDPHALLEGMLIGGYAIGA 226 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IYVR E+ + L+ A+++ + LG N G+D D+ + GAGA++CGEETA Sbjct: 227 TKGVIYVRAEYPLAIKRLENAMEQARKANYLGDNILGSGFDFDLYIKAGAGAFVCGEETA 286 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PRLKPPFPA G + PT +NNVE++A V I++ G ++ FG ++ Sbjct: 287 LIASIEGERGMPRLKPPFPAQKGFWKKPTNINNVETLANVAWIIKNGGDKFAEFGLGESK 346 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + E + + ++I GGI+ AV GG S C+PA + Sbjct: 347 GTKVFALAGKIKKGGLCEVPLGMPLRDVIYNIGGGIKNDR-KFKAVQMGGPSGGCIPA-E 404 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + Y+ + + G+ +G+ +IVMD T ++ F + ESCG+C CR GT Sbjct: 405 LIDTKVTYEDIVKTGAIVGSGGMIVMDEDTCMVDMARYFLDFTRKESCGKCIYCRLGTKR 464 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +I+LL E+S ++ ++C LG A P+ IK FR E+ I Sbjct: 465 MLEILERITQGKGKDGDIELLLELSNKVKEGSMCGLGQTAPNPVLTTIKYFRHEYEDHI- 523 Query: 418 QYHRCN 423 H+C Sbjct: 524 YNHKCT 529 >gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 615 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/403 (38%), Positives = 237/403 (58%), Gaps = 9/403 (2%) Query: 18 KSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ ++R G++ + E + I+ E++ SGLRGRGGAGF +KW F + S Sbjct: 149 ESIDQYIARDGYFAAARALTEMAPEDILQEMQKSGLRGRGGAGFPVHLKWKFAYRETSGV 208 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NADE +PG DR I+ PH+++EG +IA+ I A FIY R E+ E + Sbjct: 209 -KYVLCNADEGDPGAFMDRSILEANPHSVLEGMLIAARTINADQGFIYCRTEYPLALERV 267 Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q A+D GLLGS+ S G+D++I + GAGA++CGEETAL+ S+EG +G PR +P Sbjct: 268 QIAIDRAREYGLLGSDILGSGFGFDLEI--YQGAGAFVCGEETALMRSIEGGRGMPRPRP 325 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GL+ PT +NNVE++A VP I++ G WY+G G +++GTK+F++SG V Sbjct: 326 PFPAQKGLWDRPTVLNNVETLANVPLIIQAGGDWYAGVGTRHSKGTKVFALSGDVRNIGL 385 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 VE M + +I GGI G + AV GG S C+PA + + DY+ + G+ Sbjct: 386 VEVPMGTSLRSIIYDIGGGIPGKRE-FKAVQLGGPSGGCVPAEYLDLPV-DYEAISRAGA 443 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ +IVMD+ T ++ F + ESCG+CTPCREGT ++ +++R+ G + Sbjct: 444 IMGSGGMIVMDQRTCMVDMARFFMDFVQEESCGKCTPCREGTMRILEILDRIRAGEGVIQ 503 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ L ++S I ++C LG A P+ +K F E+ I Sbjct: 504 DLWELEDLSATIRDSSLCGLGQTAPNPVLSTLKYFPKEYEDHI 546 >gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia bacterium enrichment culture clone BF] Length = 603 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 158/420 (37%), Positives = 251/420 (59%), Gaps = 8/420 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 + Q RI G + +S+ ++ + + K L+ + +I E+ SGLRGRGG Sbjct: 114 FIDKQQRILLKNCGVINPESIDSYLAVDGYKAIQKALKSMAPEQVIAEIDRSGLRGRGGG 173 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFST KWSF K R Y++ NADE +PG DR ++ PH+++EG +IA +A+GA Sbjct: 174 GFSTATKWSFARK-SPGREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 232 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEET 176 ++Y+R E+ + L+AA+ + A G LG N LG D I++ GAGA++CGEET Sbjct: 233 QTGYVYIRAEYPLAIKRLKAAISQAEAKGFLGGNI-LGSDFSFRIMIREGAGAFVCGEET 291 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G PR++PP+P GL+G PT++NNVE+ A VP I+ GA ++ +G E + Sbjct: 292 ALIMSVEGKRGMPRIRPPYPVEAGLWGKPTSINNVETFANVPWIILNGADAFNRYGTETS 351 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G + +E M IT +E++ GG+ G L AV GG S C+PA Sbjct: 352 KGTKVFALAGSIARGGLIEVPMGITINEIVFDIGGGLASG-RKLKAVQTGGPSGGCIPA- 409 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ LK++G+ +G+ +++MD ST ++ F + ESCG+CT CR GT Sbjct: 410 SLADTPVDYESLKKIGAIMGSGGLLIMDESTCMVDVAKFFLNFTQEESCGKCTFCRVGTR 469 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M++++ R+ G + +I++L ++ + I ++C LG +A P+ IK FR E I Sbjct: 470 QMLKILNRITDGEGKDGDIEMLEDLGQKISAGSLCGLGQSAPNPVLTTIKYFRSEYEAHI 529 >gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] Length = 623 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/420 (36%), Positives = 240/420 (57%), Gaps = 8/420 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K + +I+EV SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGNINAESIDEYIAVGGFQAMAKAFFDMSPQDVIDEVTKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + ++ Y+V N DE +PG D +M +P+ +IEG IA++A+GA Sbjct: 196 GFPAGKKWSQVARQ-KEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176 +IYVR E+ + L+ A+++ A GLLG N LG V+ +H GAGA++CGE + Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNI-LGSGVNFHLHINRGAGAFVCGEGS 313 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 314 ALTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGS 373 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK FS++G + +E M + +I GG++ G V GG S CL Sbjct: 374 PGTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIED 432 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q+ +D+D +K + + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 433 QIDRP-LDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTK 491 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 492 RMLEILERIVDGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHI 551 >gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] Length = 600 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 153/379 (40%), Positives = 232/379 (61%), Gaps = 4/379 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+E+K SGLRGRGG GF TG+KW F SD+ Y++ NADE +PG DR ++ +P Sbjct: 157 VIDELKESGLRGRGGGGFPTGLKWQFARNTESDK-KYVICNADEGDPGAFMDRSLLEGDP 215 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H +IEG +IA++AIGA ++YVR E+ L+ A+ + GLLG N G+D + Sbjct: 216 HVIIEGMMIAAYAIGADEGYVYVRAEYPLAITRLEKAIKDAEEYGLLGENIFNSGFDFKL 275 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EGK+G P+ +PP+P+ GL+G PT +NNVE+ A VP I+ Sbjct: 276 HIKKGAGAFVCGEETALMNSIEGKRGMPKPRPPYPSVSGLWGKPTNINNVETFANVPFII 335 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G+ +S G E++ GTK+F+++G +N VE M T E+I + GG+ Sbjct: 336 NEGSEAFSSIGTESSAGTKVFALTGKINNTGLVEVPMGTTLREVIFEIGGGLDKN-KKFK 394 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S CLP + I DYD L + G+ +G+ ++VMD + ++ F + Sbjct: 395 AVQTGGPSGGCLPEEYLNLPI-DYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQ 453 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+CTPCREGT M+ ++ R+ G ++ +I+LL E+ +I+ ++C LG +A P+ Sbjct: 454 SESCGKCTPCREGTKRMLEILNRITTGEGREGDIELLEELGDHIKSTSLCGLGKSAPNPV 513 Query: 402 QGLIKNFRPLIEERIDQYH 420 I +FR E I + + Sbjct: 514 LSTITHFRKEYEAHIHKQN 532 >gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum] Length = 627 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 159/399 (39%), Positives = 233/399 (58%), Gaps = 8/399 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60 L ++ +FT L + + L + ++ +L+ G + +++ SG+ GRGG F Sbjct: 175 LANEPVVFTGLRSGETRYLERYREDHGYRALEGLLKTGDAEAAFEQIRLSGVAGRGGGAF 234 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 K + K + P YLV NADE EPGT KDR IM +PH+LIEG IA+ IGA Sbjct: 235 PMYRKLDAVRK--NPPPRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 292 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETAL 178 FIY+R E+ L+ A+ E ++GLLG LG D + ++ GAGAYICGEET+L Sbjct: 293 GFIYLRSEYPHSFHILEKAIAEARSAGLLGPRI-LGSDFSFRLRLYRGAGAYICGEETSL 351 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + SLEGK+ PR KPP + VGL+G PT NVE++A +P ILR G WY+ G + G Sbjct: 352 INSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPAILRNGGDWYARLGDTKSPG 411 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF +SGH+ P E + ++ LIE GGI GG +L ++P GS+ L + Sbjct: 412 TKLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL 470 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + +DY + E+G+ LG+A+VIVMD S ++ + ++ F HESCGQCTPCR+GT + Sbjct: 471 DLS-LDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDV 529 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 ++ ++V+G + +DLL + + +IC LG +A Sbjct: 530 YEILLKIVQGEGKPAYLDLLKSIGTYMREASICGLGQSA 568 >gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 626 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 152/422 (36%), Positives = 245/422 (58%), Gaps = 7/422 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q R+ G + + +++ ++ G + + +L + +I E+K SGLRGRGGAGF T Sbjct: 144 QQRVVLERCGYINPEDIAEYIAAGGYRALTSVLFSLSPEEVIEEIKKSGLRGRGGAGFPT 203 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW +V S + Y++ NADE +PG DR ++ +PH +IEG +I +AIG+ + Sbjct: 204 GKKWEAARRVPSSK-RYVICNADEGDPGAFMDRALLEGDPHAVIEGMIICGYAIGSDEGY 262 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 +YVR E+ + L+ A+++ YA+GLLG N G+ + ++ GAGA++CGE TAL+ S Sbjct: 263 VYVRAEYPLAVKRLRIAIEQAYAAGLLGENILGSGFSFHLHINEGAGAFVCGESTALMAS 322 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G PR+K P GL+G PT +NNVE+ A VP I+ RG+ W++ G + ++GTK+ Sbjct: 323 IEGNRGIPRIKVPRSTEKGLFGKPTVLNNVETFANVPLIILRGSQWFANIGTKGSKGTKI 382 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++SG V + VE M T ELI GG G A+ GG S C+P M Sbjct: 383 FALSGKVKHTGLVEVPMGTTLKELIFDI-GGGIKGGKRFKALQIGGPSGGCIPE-DMLDL 440 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ L G+ +G+ +++VMD ++ F + ESCG+CTPCREGT M+ + Sbjct: 441 PIDYESLTGAGAMMGSGSIVVMDEDNCMVNTARFFLNFTERESCGKCTPCREGTKQMLNI 500 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+ +G ++ LL + + ++ + C LG +A P+ ++ FR + + + R Sbjct: 501 LERITRGEGSPSDLSLLEFLGQVVKATSFCGLGTSAPNPVLTTLRFFRSEYLQHVTE-RR 559 Query: 422 CN 423 C+ Sbjct: 560 CS 561 >gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 634 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 158/399 (39%), Positives = 233/399 (58%), Gaps = 8/399 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60 L ++ +FT L + + L + ++ +L+ G + +++ SG+ GRGG F Sbjct: 182 LANEPVVFTGLRAEKTRYLERYREDHGYRALESLLKTGDAEAAFEQIRLSGVAGRGGGAF 241 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 K + K + P YLV NADE EPGT KDR IM +PH+LIEG IA+ IGA Sbjct: 242 PMYRKLDAVRK--NPPPRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 299 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETAL 178 FIY+R E+ L+ A+ E +GLLG LG D + ++ GAGAYICGEET+L Sbjct: 300 GFIYLRSEYPHSFHILEKAIAEARNAGLLGPRI-LGSDFSFRLRLYRGAGAYICGEETSL 358 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + SLEGK+ PR KPP + VGL+G PT NVE++A +P+ILR G WY+ G + G Sbjct: 359 INSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPSILRNGGDWYARLGDVKSPG 418 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF +SGH+ P E + ++ LIE GGI GG +L ++P GS+ L + Sbjct: 419 TKLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL 477 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + +DY + E+G+ LG+A+VIVMD S ++ + ++ F HESCGQCTPCR+GT + Sbjct: 478 DLS-LDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDV 536 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 ++ ++++G + +DLL + + +IC LG +A Sbjct: 537 YEILLKIIQGEGKPAYLDLLKSIGTYMREASICGLGQSA 575 >gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 582 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 159/420 (37%), Positives = 241/420 (57%), Gaps = 10/420 (2%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 L Q RI GL +++ + + ++ + K + E +I E+K S +RGRGGAG Sbjct: 97 LRKQKRIALKNCGLIDPQNIHHYIDQNGYEAIKKCIGEMTPAEVIEEIKVSNIRGRGGAG 156 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW+ + ++ P Y+V NADE +PG DR I+ +PH +IEG +IA++AIGA Sbjct: 157 FPTWFKWNAAMQ-SNEYPKYIVCNADEGDPGAFMDRSILEGDPHAIIEGMMIAAYAIGAQ 215 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176 +YVR E+ E LQ A+ + LLG NS+ +D+ V GAGA++CGEET Sbjct: 216 YGVVYVRAEYPLAIERLQKAILQAKELNLLGDHIFNSQFQFDIK--VKAGAGAFVCGEET 273 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ SLEG++G PRLKPPFPA GL+ PT +NNVE+ A +P I+ +G ++ G N+ Sbjct: 274 ALIASLEGERGMPRLKPPFPAEKGLWQKPTNINNVETFANIPWIINQGGKAFADIGVNNS 333 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G + VE M + E+I GGI D A+ GG S C+P Sbjct: 334 QGTKVFALTGKIRDGGLVEVPMGTSLQEIIFDIGGGILNDRD-FKALQLGGPSGGCVP-N 391 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + I+DY+ + + G+ +G+ ++VMD +T ++ F ESCG+C CR GT Sbjct: 392 ALLDTIVDYESVTKTGAIMGSGGMVVMDDTTCMVDMAKFFLDFTCKESCGKCIHCRLGTK 451 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ R+ +G Q +I+LL E+ I+ ++C LG A P+ IK FR E+ I Sbjct: 452 RMLEILTRITEGHGQTGDIELLEELGSGIKEGSLCGLGQTAPNPVLSTIKYFREEYEKHI 511 >gi|218441075|ref|YP_002379404.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424] gi|218173803|gb|ACK72536.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424] Length = 530 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 235/384 (61%), Gaps = 5/384 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ + E +I+E++ SGLRGRGG G+ TG+KW+ + K+ + Y++ N DE Sbjct: 140 GYQSLYKALYEMSSPEVISEIQKSGLRGRGGGGYPTGLKWATVAKM-PGKQKYVICNGDE 198 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR I+ +PH ++EG IA++A+GA +IYVR E+ + L+ A+ + Sbjct: 199 GDPGAFMDRSILESDPHLVLEGMAIAAYAVGADHGYIYVRAEYPLAIKRLEKAIAQAKKY 258 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G+LGS + +D I + GAGA++CGEETAL+ S+EG++G PR +PP+PA VGL+GCP Sbjct: 259 GILGSQIFESPFDFKIDIRIGAGAFVCGEETALIHSIEGQRGNPRTRPPYPAEVGLWGCP 318 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NNVE+ A + I+R+G WYS G E ++GTK+F+++G + +E M IT E+ Sbjct: 319 TLINNVETYANIAAIIRKGGDWYSSIGTETSKGTKIFALTGKIRNNGLIEVPMGITLREI 378 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 +E+ GG+ G + AV GG S C+PA + + DY+ L ++GS +G+ ++VMD+ Sbjct: 379 VEEMGGGVPDG--EVKAVQTGGPSGGCIPADLLDTPV-DYNSLTKLGSMMGSGGMVVMDK 435 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 T +++ F + ESCG+C PCR GT M ++++LV A +I+ L + + Sbjct: 436 ETSMVEVAKFYMEFCQEESCGKCVPCRAGTVQMYELLKKLVNRQATPADIEKLEALCLAV 495 Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409 + ++C LG +A P+ + FR Sbjct: 496 KETSLCGLGQSAPNPVLSTLHYFR 519 >gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] Length = 646 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 161/397 (40%), Positives = 221/397 (55%), Gaps = 18/397 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + G +I EV +GL GRGGA F TG KW D PH Sbjct: 257 SLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQAT-AAQPDHPH 315 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADESEPGT KDR +M +P+ L+E IA++A GAH ++Y+RGE+ R L Sbjct: 316 YLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTH 375 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ GLLG + GY DI + GAGAYICGEETAL S+EG++G+PR KPPFP Sbjct: 376 AIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPV 435 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT NNVE++ V IL GA Y+ G + G KLF +SG V P E Sbjct: 436 EKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELP 495 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGS 313 T EL+ G+R DNL AV+ GG++ G +R +D ++G +E G+ Sbjct: 496 FGATLGELLA--LAGVR---DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGT 545 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQ 371 LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ G A Sbjct: 546 TLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAA 605 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +I LL EV + + +IC LG A ++ I Sbjct: 606 ADDIALLREVGRAMRDASICGLGQTAWNAVESAIDRL 642 >gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 589 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 155/423 (36%), Positives = 238/423 (56%), Gaps = 18/423 (4%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + + R +D + K++ + + EV SGLRGRGGAGF TG+KW Sbjct: 111 VLRNCGIIDPEKIDEYIEREGYDALKKVVSSMTSEQVYTEVLDSGLRGRGGAGFPTGLKW 170 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F D Y+V NADE +PG DR ++ +PH +IEG I +AIGA IY R Sbjct: 171 KFANLSKGDE-KYVVCNADEGDPGAFMDRSVLEGDPHAIIEGMAICGYAIGASHGIIYCR 229 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ ++L A+++ G LG + G+ D+ + GAGA++CGEETAL+ S+EGK Sbjct: 230 AEYPLAIKNLNIAIEQAKERGFLGEDIMGSGFSFDLKIKEGAGAFVCGEETALIASIEGK 289 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA G++G PT +NNVE+ A V I+R G+ +S +G +RGTK+F+++ Sbjct: 290 RGMPRPRPPFPAQSGVFGKPTNINNVETYANVAWIIRNGSKEFSKYGIGKSRGTKVFALA 349 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + VE M + E+I GGI + AV GG S C+P ++ +DY Sbjct: 350 GKIAKGGLVEVPMGMPIREVIYDIGGGIPDDKE-FKAVQMGGPSGGCIPK-ELLDTPVDY 407 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + G+ +G+ ++VMD T +I F ++ESCG+C CR GT M+ +++R+ Sbjct: 408 ESINATGAIMGSGGMVVMDEDTCMIDVARFFLSFVQNESCGKCPFCRIGTKRMLEILDRI 467 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY------ 419 KG ++ +IDLL E+ I+ ++C LG A P+ IK F+ D+Y Sbjct: 468 TKGEGKESDIDLLLELCHQIKDGSLCGLGQTAPNPVLTTIKYFK-------DEYMAHIVD 520 Query: 420 HRC 422 HRC Sbjct: 521 HRC 523 >gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] Length = 629 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 165/423 (39%), Positives = 251/423 (59%), Gaps = 11/423 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + +S G ++ ++K L + + +I+E+ S LRGRGG GF TG KW Sbjct: 150 VLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGGGFPTGYKW 209 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA +IYVR Sbjct: 210 SQVAGQ-EEKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGAQEGYIYVR 268 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ L+ A+++ GLLG + LG D +H GAGA++CGE +AL S+EG Sbjct: 269 AEYPLAISRLKRAIEQAEEYGLLGDHI-LGTDFSFHLHINKGAGAFVCGEGSALTASIEG 327 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +G PR+KPP GL+G PT +NNVE+ A VP I+ GA W+ G G E + GTK F++ Sbjct: 328 NRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSPGTKAFAL 387 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G VN+ +E M T E+I GGI+G + AV GG S CL + +D Sbjct: 388 TGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPHL-DVNLD 445 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D LK+MG+ +G+ ++VMD ST +++ F ++ESCG+C PCREGT M+ ++ER Sbjct: 446 FDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 505 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY---H 420 +V+G + ++DLL E++ I +C LG +AA P+ +K FR +E +D+ H Sbjct: 506 IVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVVDKKCASH 565 Query: 421 RCN 423 CN Sbjct: 566 NCN 568 >gi|256783976|ref|ZP_05522407.1| respiratory chain oxidoreductase [Streptomyces lividans TK24] Length = 419 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 160/386 (41%), Positives = 218/386 (56%), Gaps = 18/386 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + G +I EV +GL GRGGA F TG KW D PH Sbjct: 30 SLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQAT-AAQPDHPH 88 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADESEPGT KDR +M +P+ L+E IA++A GAH ++Y+RGE+ R L Sbjct: 89 YLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTH 148 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ GLLG + GY DI + GAGAYICGEETAL S+EG++G+PR KPPFP Sbjct: 149 AIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPV 208 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT NNVE++ V IL GA Y+ G + G KLF +SG V P E Sbjct: 209 EKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELP 268 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGS 313 T EL+ G+R DNL AV+ GG++ G +R +D ++G +E G+ Sbjct: 269 FGATLGELLA--LAGVR---DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGT 318 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQ 371 LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ G A Sbjct: 319 TLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAA 378 Query: 372 KREIDLLYEVSKNIEGRTICALGDAA 397 +I LL EV + + +IC LG A Sbjct: 379 ADDIALLREVGRAMRDASICGLGQTA 404 >gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] Length = 595 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 155/405 (38%), Positives = 232/405 (57%), Gaps = 6/405 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + G + + K+L E D +I + SGLRGRGGAGF TG+KW +D+ Sbjct: 129 IEEYIGTGGYQALGKVLTEMTPDEVIQTLLDSGLRGRGGAGFPTGLKWKLAKGNDADQ-K 187 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+ NADE +PG DR ++ +PH ++E IA +AIGA FIYVR E+ + L+ Sbjct: 188 YVCCNADEGDPGAFMDRSVLEGDPHAVLEAMAIAGYAIGASQGFIYVRAEYPIAVQRLKI 247 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ LLG + G+ DI + GAGA++CGEETAL+ S+EGK+G+PR +PPFPA Sbjct: 248 AIEQAREMELLGKDIFGTGFSFDIDLRLGAGAFVCGEETALMTSIEGKRGEPRPRPPFPA 307 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G P+ +NNVE++A +P I+ G W++ G E ++GTK+F++ G ++ VE Sbjct: 308 QKGLFGKPSILNNVETLANIPQIILNGPEWFNAMGTEKSKGTKVFALGGKIHNTGLVEVP 367 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M T E++E+ GG G A GG S C+PA I DYD L +GS +G+ Sbjct: 368 MGTTLREIVEEI-GGGIPGGKKFKAAQTGGPSGGCIPAEHFDIPI-DYDNLISIGSMMGS 425 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +IV+D ++ F ESCG+CTPCR GT M+ ++ ++ KG A +ID Sbjct: 426 GGLIVLDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKRMLEILTKITKGQATMEDIDK 485 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 L E+ ++ ++C LG A P+ + FR E I + RC Sbjct: 486 LEELCYYVKTNSLCGLGQTAPNPVLSTLHFFRDEYEAHIKE-KRC 529 >gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 656 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 157/384 (40%), Positives = 218/384 (56%), Gaps = 13/384 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + L G +I EV SGL GRGGA F TG KW + D PH Sbjct: 245 SLDDYRAAGGYAALRRALRLGPAGVIREVSDSGLVGRGGAAFPTGRKWQATAQQ-PDGPH 303 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADESEPGT KDR +M +P +++E IA +A+GA ++Y+RGE+ R L+ Sbjct: 304 YLVCNADESEPGTFKDRVLMEGDPFSVVEAMTIAGYAVGARTGYLYIRGEYPRALRHLEN 363 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV GLLG + G+ DI + GAGAYICGEETA+ S+EG++G+PR KPPFP Sbjct: 364 AVALARGRGLLGPDILGSGFAFDIEIRRGAGAYICGEETAIFGSIEGQRGEPRSKPPFPV 423 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNVE++ V +L G Y+ G + G KLF +SG V P E Sbjct: 424 EKGLFGKPTAVNNVETLVNVLPVLLMGGPAYAAVGTGQSTGPKLFCLSGGVRRPGLYELP 483 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGS 313 T +LIE GG+ G + AV+ GG++ +RG +D ++G + G+ Sbjct: 484 FGATLRDLIEA-AGGMPEGR-TIQAVLLGGAA-----GTFVRGDELDIPLTFEGARAAGT 536 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+ V+V+D + D++ + R++ F++ ESCGQC PCR GT + R+ G Sbjct: 537 SLGSGVVLVLDDTADLVATLVRVAAFFRDESCGQCVPCRVGTVRQEESLLRIRAGGDAAA 596 Query: 374 EIDLLYEVSKNIEGRTICALGDAA 397 E+ LL EV + +IC LG A Sbjct: 597 EVPLLREVGLAMRDASICGLGQTA 620 >gi|57235004|ref|YP_180896.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] gi|57225452|gb|AAW40509.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] Length = 417 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 152/387 (39%), Positives = 221/387 (57%), Gaps = 9/387 (2%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 M+ G + + K L D +I EVK S L GRGGA F TG+KW K ++ P Y+V N Sbjct: 23 MADGGYQALKKALSMTPDEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEKAN-PKYIVCN 81 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 A E EPGT KDR I++++PH ++EG +IA++A+G FI+ R + E E Q A+D+ Sbjct: 82 ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTEEIELFQKAIDQA 141 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 G LG N + +DI + AGAYICGEETAL ESLEG +G P +PP+P VGL Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPAARPPYPVQVGLM 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PTTVNNVE++ VP I+ GA W++ G + GTKLF +SG+V P E + Sbjct: 202 DKPTTVNNVETLCNVPAIINNGADWFAAIGHPDYPGTKLFCLSGNVKEPGVFEMPLGTNL 261 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +L+E GG+ G + AV+PGG S L + +D+ L + G+ LG+ AVIV Sbjct: 262 KDLLEAG-GGVDGKFK---AVLPGGISSSLLTEMDVN---LDFKTLAKAGTMLGSGAVIV 314 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 ++ T ++ ++ F+ E CG+C+ CREGT ++ R +G + E++ L E+ Sbjct: 315 INSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILSRFSRGQGNRNELEWLLELH 374 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ C LG A I+NF+ Sbjct: 375 EVMKDTASCGLGQVALNVAASAIRNFK 401 >gi|300023972|ref|YP_003756583.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC 51888] gi|299525793|gb|ADJ24262.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC 51888] Length = 521 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 154/391 (39%), Positives = 226/391 (57%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D G +D + K L I+ EV SGLRGRGGAGF TG+KW + + +D+ Sbjct: 116 SIEDYRKHGGYDGLTKALAMKPIDIVTEVTTSGLRGRGGAGFPTGIKWKTVHDIAADQ-K 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+ NADE + GT DR +M +P LIEG IA+ A GA +IYVR E+ +L+ Sbjct: 175 YVACNADEGDSGTFADRMLMEGDPFCLIEGMTIAAVAGGATKGYIYVRSEYPHSVHNLRQ 234 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ A+ LG N + GY D+ V GAGAY+CGEET++LESLEGK+G R KPP PA Sbjct: 235 AIEIARAANWLGDNIQGSGYSFDLFVRMGAGAYVCGEETSMLESLEGKRGLVRYKPPIPA 294 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT +NNV S A VP IL +G +Y +G +RGT F I+G++ VE++ Sbjct: 295 IEGLFGKPTIINNVMSFAAVPIILAKGGEFYKNYGIGRSRGTLAFQITGNIKQGGLVEKA 354 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T +LIE GG G + AV GG LP + MDY+ ++ + +G Sbjct: 355 FGVTTRQLIEDWGGGTYSGR-PVRAVQIGGPLGAYLPESKFD-VPMDYEEFAKVDAMVGH 412 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G+ + VM+R++ + ++R I+L Sbjct: 413 GGLVVFDDTVDMAKMARFAMEFCAIESCGKCTPCRIGSTRGVEVMDRIIADVDRERNIEL 472 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + + ++CALG +P++ ++ F Sbjct: 473 LEDLCETMTDGSLCALGGLTPYPVRSALRGF 503 >gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus mobilis] Length = 609 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 161/411 (39%), Positives = 230/411 (55%), Gaps = 16/411 (3%) Query: 19 SLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS--- 74 + D + G + ++K + E D +I EV SGLRGRGGAGF TG KW K C+ Sbjct: 142 QIDDYIDHGGYGALEKTVKEMTPDVVIEEVHRSGLRGRGGAGFPTGRKW----KQCASYE 197 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + P Y+V N DE +PG DR IM +PH++IEG +I ++A+GA+ FIY+R E+ E Sbjct: 198 NSPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGANEGFIYIRDEYALAVE 257 Query: 135 SLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 +++ A+++ G LG N S +D+ I+ G GA++CGE TAL+ S+EGK G+PR Sbjct: 258 TIRKAIEQARERGYLGRNILGSSFSFDLSIV--RGGGAFVCGESTALMASIEGKVGEPRA 315 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 K GL+G PT +NNVE+ A +P IL +G + G E + GTK+FS+ G V Sbjct: 316 KYIRSVEKGLWGQPTVLNNVETWANIPVILTQGGDQFRQIGTEKSTGTKVFSLVGKVKNT 375 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 VE M I ELI GGI GG AV GG S C+P ++ +D+D L E Sbjct: 376 GLVEVPMGIRLRELIFDIGGGILGGR-KFKAVQTGGPSGGCIPE-ELLDLPVDFDSLTEA 433 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +G+ +IVMD T ++ F ESCG+C PCREG M ++E + +G Q Sbjct: 434 GSMMGSGGMIVMDDRTCMVDVARYYVQFLADESCGKCVPCREGIRRMAEILEDICEGRGQ 493 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + ++DLL + + + +C LG +A P+ I+ FR I Q RC Sbjct: 494 ESDLDLLLNIGETMAEAALCGLGKSAPNPVSTTIRYFREEYLAHI-QERRC 543 >gi|119510367|ref|ZP_01629502.1| hydrogenase subunit [Nodularia spumigena CCY9414] gi|119465004|gb|EAW45906.1| hydrogenase subunit [Nodularia spumigena CCY9414] Length = 533 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 230/370 (62%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ + SGLRGRGGAG+ TG+KW+ + K DR +++ NADE +PG DR ++ +P Sbjct: 162 VVDAITRSGLRGRGGAGYPTGLKWATVAKAEGDR-KFVICNADEGDPGAFMDRSVLESDP 220 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159 H ++EG IA++A+GA+ +IY+R E+ LQ A+ + + G+LGS +S+ + + Sbjct: 221 HRVLEGMAIAAYAVGANQGYIYIRAEYPIAINRLQTAIRQAQSFGILGSQIFDSRFDFKI 280 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGAY+CGEETAL+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A V Sbjct: 281 DIRI--GAGAYVCGEETALMASIEGKRGTPHPRPPYPAESGLWGYPTLINNVETYANVAP 338 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+R GA W++ G E ++GTK+F+++G++ +E M + +++E GG Sbjct: 339 IIRNGAEWFASIGTEKSKGTKVFALAGNITNTGLIEVPMGTSLQQIVEVM-GGGVPNGGV 397 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AV GG S C+PA + DY+ L E+GS +G+ +IVMD ST+++ F Sbjct: 398 VKAVQTGGPSGGCIPASAFDSPV-DYESLTELGSIMGSGGMIVMDESTNMVDVARYFMEF 456 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+C PCR GT + +++ R+ G A +++LL E+ ++ ++C LG +A Sbjct: 457 CMDESCGKCIPCRVGTVQLYKLLTRISAGEASLADLELLEELCDMVKHTSLCGLGQSAPN 516 Query: 400 PIQGLIKNFR 409 P+ ++ FR Sbjct: 517 PVFSTLRYFR 526 >gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 623 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 155/402 (38%), Positives = 237/402 (58%), Gaps = 5/402 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + D M RG + ++ K+L R+ +I +KASGLRGRGG GF TG+KW F K D+ Sbjct: 156 EKIEDYMGRGGYKSLLKVLSSMKREEVIETIKASGLRGRGGGGFPTGLKWEFAYKAKGDK 215 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 ++V NADE +PG +R ++ +PH+++EG +IA++ +GA + Y+R E+ E Sbjct: 216 -KFVVCNADEGDPGAFMNRTLLERDPHSILEGMIIAAYTVGAQKGYAYIRAEYPIAVEMF 274 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ A GLLG N G+ D+ V GAGA++CGEETALL S+EGK+G PR +PPF Sbjct: 275 NKAINDAKALGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGVPRPRPPF 334 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE+ A VP I+R G Y G E + GTK+FS++G + +E Sbjct: 335 PAQKGLWGYPTLINNVETYANVPKIIRDGVKKYRENGVEKSPGTKMFSVTGPLKLTGIIE 394 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ++E CGG G + A+ GG S CLP + +DYD LK + + + Sbjct: 395 IPFGTTIRYVLENICGGTTDG-KKIKAIQIGGPSGACLPE-KYFDLPLDYDTLKSIDAMV 452 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++ + + +++ F K ESCG+C PCREGT ++E+ +G A + ++ Sbjct: 453 GSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTQGKATEEDL 512 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + L ++K I+ ++C LG A PI +K+FR E I+ Sbjct: 513 ENLEYLAKIIKTASLCGLGKTAPNPILSTLKHFREEYIEHIN 554 >gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC 27021] Length = 624 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 153/397 (38%), Positives = 231/397 (58%), Gaps = 5/397 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + S+ + ++ + +K+L + D +I E++ S LRGRGG GF G KWS + + Sbjct: 153 IDATSIEEYLAIDGYSAFEKVLFDMKADEVIKEIEESNLRGRGGGGFPAGRKWSQVSRQ- 211 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + Y+V N DE +PG DR IM +PH ++EG +IA A GA +IYVR E+ Sbjct: 212 KEEIRYIVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGVACGAQKGYIYVRAEYPLAV 271 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L A+++ G+LG N G+ D+ ++ GAGA++CGE +AL S+EGK+G PR+K Sbjct: 272 SRLSNAIEQARKYGILGENILGTGFSFDLQINRGAGAFVCGEGSALTASIEGKRGMPRVK 331 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PP GL+G PT +NNVE+ A VP ++ +GA WY G EN+ GTK F+++G++ Sbjct: 332 PPRTVEQGLFGKPTVLNNVETFANVPIVINKGAEWYRSIGPENSPGTKAFALTGNIENTG 391 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 +E M T E+I GGIR G AV GG S CL A + +D+D LK+ G Sbjct: 392 LIEVPMGTTLREVIFDIGGGIRDG-KRFKAVQIGGPSGGCLTAEHL-DLPLDFDSLKKAG 449 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + +G+ ++VMD T +++ F K+ESCG+C PCREGT M+ ++E +V G + Sbjct: 450 AMIGSGGLVVMDEDTCMVEVARFFMNFTKNESCGKCVPCREGTKRMLVILEGIVAGKGKL 509 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++D+L E++ I +C LG A P+ IKNF+ Sbjct: 510 EDMDMLLELADTISATALCGLGKTAPSPVVSTIKNFK 546 >gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 617 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 160/400 (40%), Positives = 236/400 (59%), Gaps = 4/400 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D ++ G ++ ++K L+ R II+EVK SGLRGRGG GF TG KW F+ D+ Sbjct: 150 ESIEDYIATGGYEGIEKALKMDRQAIIDEVKKSGLRGRGGGGFPTGNKWQFVYNAPGDK- 208 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y V NADE +PG DR ++ +PH ++EG +IA +AIGA +IY R E+ L Sbjct: 209 KYAVCNADEGDPGAFMDRSVLEGDPHAVLEGMMIAGYAIGADEGYIYCRAEYPLAIRRLN 268 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + GLLG N G+ I + GAGA++CGEETALL S+EGK+G PR++PPFP Sbjct: 269 LAIAQAEQLGLLGDNILDSGFSFRIKIKAGAGAFVCGEETALLNSIEGKRGMPRVRPPFP 328 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+ PT +NNVE+ A VP I+R+G WY+ G E ++G+K+F ++G VN +E Sbjct: 329 AHKGLWEKPTVLNNVETYANVPFIIRKGGDWYAAMGTEKSKGSKVFCLTGKVNNTGLLEV 388 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M IT + + GG G AV GG S CLP ++ + DY+ L G+ +G Sbjct: 389 PMGITLRD-VIFSIGGGIQGGKKFKAVQSGGPSGGCLPEEKLDLPV-DYESLTAAGAIMG 446 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++VMD +T ++ F + ESCG+CTPCREGT M+ ++ ++ G + +ID Sbjct: 447 SGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKRMLELLGKICDGRGELEDID 506 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L +++ I+ +C LG PI ++ FR E I Sbjct: 507 TLERLARVIKNSALCGLGQTCPNPILTTLRYFRHEYEAHI 546 >gi|330860331|emb|CBX70644.1| NADH-quinone oxidoreductase subunit F [Yersinia enterocolitica W22703] Length = 367 Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 147/342 (42%), Positives = 205/342 (59%), Gaps = 6/342 (1%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I L+ Sbjct: 5 YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 64 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 65 AIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 124 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 + G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P E Sbjct: 125 SSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWE 184 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT E++E + GG+R G A PGG+ L A + MD++ + + GS L Sbjct: 185 LPFGITAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRL 242 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I Sbjct: 243 GTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 302 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L ++ + + G+T CA A P+Q IK FR E I Sbjct: 303 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 344 >gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 541 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 160/422 (37%), Positives = 241/422 (57%), Gaps = 9/422 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTG 63 Q + N + +++ D ++ G ++ + K+L R+ +I+EVK SGLRG GGAGF G Sbjct: 115 QRTLLKNCGHIDPENIDDYIAAGGYEALKKVLSGMTREQVIDEVKRSGLRGLGGAGFPAG 174 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW K D Y++ NADE +PG +DR ++ PH+L+EG VIA +AIGA +I Sbjct: 175 RKWEACYKAEGDV-KYVICNADEGDPGAFQDRSVIEGTPHSLLEGMVIAGYAIGAKVGYI 233 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLES 181 YVR E+ + L+ A+ + + LG LG D +I V GAGA++CGE TAL+ S Sbjct: 234 YVRAEYPLAVKRLRTAISKAKKNKYLGKKI-LGTDFTFNIEVFQGAGAFVCGESTALVLS 292 Query: 182 LEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 +EGK+G P+ P P VGL+ PT +NNV+++A +P I+ GA W++G G E ++GT Sbjct: 293 IEGKRGMPKASPRPRTTEVGLWDKPTLLNNVKTLAYIPQIIANGADWFAGIGTEKSKGTV 352 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G V +E M IT E+I GGI G AV GG S CLP + Sbjct: 353 ILALTGKVVNNGLIEVPMGITLREIIFGIGGGIPDG-KKFKAVQTGGPSGGCLPE-HLLD 410 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L + GS +G+ ++VMD T ++ F + ESCGQC PCR GT M Sbjct: 411 LPVDFDSLNDAGSIMGSGGIVVMDEETCMVDVARYFLDFTQRESCGQCIPCRLGTKQMFD 470 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ + KG Q +ID+L E+ + + ++CALG A P+ ++ FR E I++ Sbjct: 471 ILDDITKGKGQPEDIDMLLEIGEAVAKTSLCALGKTAPNPVLTTLRFFRHEYEAHINE-K 529 Query: 421 RC 422 RC Sbjct: 530 RC 531 >gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH [Geobacter metallireducens GS-15] Length = 635 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 155/416 (37%), Positives = 239/416 (57%), Gaps = 6/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 Q I + L KS+ D ++ G + + K+L + + ++ E+K S LRGRGG GF Sbjct: 136 QRNILSENLRLDSKSMDDYLAIGGYSALSKVLFQMTPEDVMGEIKKSNLRGRGGGGFPAW 195 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW + D Y++VNADE +PG DR ++ PH+++EG +I ++A+GAH FI Sbjct: 196 RKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGAHEGFI 254 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ E++ A+ + G +G + G+D + VH GAGA++CGE +AL+ +L Sbjct: 255 YVRQEYPLAVENINLAIRQASERGFVGKDILGSGFDFTVKVHMGAGAFVCGESSALMTAL 314 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG+ G+PR K A G++ P+ +NNVE+ A V I+ +GA W++ +G + GTK+F Sbjct: 315 EGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIITKGADWFTSYGTAGSTGTKIF 374 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+ G + VE M +T ++I K GGI GG AV GG S C+P M Sbjct: 375 SLVGKITNTGLVEVPMGVTLRDIITKVGGGIPGG-KKFKAVQTGGPSGGCIPEA-MLDLP 432 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L + GS +G+ +IVMD T ++ F K ESCG+CTPCREG M+ V+ Sbjct: 433 VDFDELTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQMLAVL 492 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+ G ++ +I+LL E++++ G +CALG +A P+ I+ FR E I + Sbjct: 493 TRITVGKGKEGDIELLEELAEST-GAALCALGKSAPNPVLSTIRYFRDEYEAHIRE 547 >gi|307331426|ref|ZP_07610544.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113] gi|306882925|gb|EFN13993.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113] Length = 366 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 156/362 (43%), Positives = 214/362 (59%), Gaps = 18/362 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I EV +GL GRGGA F TG KW+ + D PHYLV NADESEPGT KDR +M +P Sbjct: 1 MIREVTEAGLVGRGGAAFPTGRKWAATAQQ-PDHPHYLVCNADESEPGTFKDRVLMEGDP 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDI 161 + LIE IA +A GAH ++Y+RGE+ R L+ A+D A G LG + G+ +I Sbjct: 60 YALIEAMTIAGYATGAHRGYLYLRGEYPRALRRLRTAIDRARARGFLGEDVMGQGFAFEI 119 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGAYICGEETA+ S+EG++G+PR KPPFP GL+G PT VNNVE++ V IL Sbjct: 120 EIRRGAGAYICGEETAIFNSIEGRRGEPRSKPPFPVEKGLFGKPTAVNNVETLVNVLPIL 179 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA Y+ G + GTKLF +SG V P E T EL+E + G + L Sbjct: 180 IEGAQAYARTGTGTSTGTKLFCVSGTVARPGVYELPFGATLGELLE-----LAGPPETLR 234 Query: 282 AVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 AV+ GG++ G +R +D ++G + G+ LG+ V+V+D S D+ + + R++ Sbjct: 235 AVLLGGAA-----GGFVRPDELDVPLTFEGTRAAGTTLGSGVVLVLDDSVDLPRVLLRIA 289 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F++ ESCGQC PCR GT + R+ + G A +I LL EV + + +IC LG Sbjct: 290 EFFRDESCGQCVPCRVGTVRQEEALHRIKDLTGAAAAGDIALLREVGQAMRDASICGLGQ 349 Query: 396 AA 397 A Sbjct: 350 TA 351 >gi|162148250|ref|YP_001602711.1| NADH-quinone oxidoreductase subunit F [Gluconacetobacter diazotrophicus PAl 5] gi|209542890|ref|YP_002275119.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl 5] gi|161786827|emb|CAP56410.1| putative NADH-quinone oxidoreductase chain F [Gluconacetobacter diazotrophicus PAl 5] gi|209530567|gb|ACI50504.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl 5] Length = 428 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 172/401 (42%), Positives = 235/401 (58%), Gaps = 8/401 (1%) Query: 27 GHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNA 84 G W + + L + + +I EV S LRGRGGAGF TG KWSF+P+ D+ YLV NA Sbjct: 25 GGWQGLRRALRDLTPEAVIAEVTDSRLRGRGGAGFGTGQKWSFVPRTPAGDQRKYLVANA 84 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE EPGT KDR ++ P LIEG ++A +AI A I++RGE+ + L A+DE Sbjct: 85 DEMEPGTFKDRILLEGNPLQLIEGMIVAGYAIQAGEGVIFLRGEYHLALDRLTRAIDEAR 144 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 A G LG + + G+D DI VH G YICGEETALL +LEG + PR KPPFP GL+G Sbjct: 145 AVGWLGRDIAGSGFDFDIHVHASGGRYICGEETALLTALEGSRAVPRSKPPFPQVGGLWG 204 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 P+ VNNVE++ VP IL GA+W+ + GTKLF +SG V P E M Sbjct: 205 APSVVNNVETLCNVPHILANGAAWFRALAIGPDGGTKLFGVSGRVKRPGAWELPMGTPLR 264 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+IE+H GG+R G+ L A++PGG+S L G + A MDY +++ GS LGT I++ Sbjct: 265 EIIEEHAGGMRDGY-GLRALLPGGASTAFLDGGAIDIA-MDYATVEKAGSRLGTGLAILL 322 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D T + + L F+ ESCG CTPCR+G W+ R+++ + +G + ++DLL ++ Sbjct: 323 DDRTCPVGMLRNLEHFFAQESCGWCTPCRDGLPWVERLLDAIEEGRGEDGDLDLLAHHAR 382 Query: 384 NI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 I GRT CA A P+ + FR E + + RC Sbjct: 383 MIGPMGRTFCAHAPGAIAPLSSGLNLFRAEFEAHL-RLGRC 422 >gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] Length = 626 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 157/410 (38%), Positives = 235/410 (57%), Gaps = 9/410 (2%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ +Q +SL++ + + + K I + + II+E+K SGLRGRGGAGF TG KW Sbjct: 152 NVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGAGFPTGRKWESA 211 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 KV + Y++ NADE +PG DR I+ +PH+++EG I AIGA+ FIYVR E+ Sbjct: 212 YKV-ENSQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGANQGFIYVRAEY 270 Query: 130 IRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + L+ A+ + + LLG N S +D+++ G+GA++CGE TAL+ES+EG++ Sbjct: 271 PIAVKRLRIAIQQAKETNLLGDNIFGSDFSFDIEL--RLGSGAFVCGEGTALMESIEGRR 328 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR K A GL+ PT +NNVE+ A VP I+ RGA W++ FG E + GTK+F++ G Sbjct: 329 GMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSPGTKVFALGG 388 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V VE M T E+I GGI+ G AV GG S C+P + +D++ Sbjct: 389 KVVNTGLVEVPMGSTLREIIFDIGGGIKDG-KKFKAVQTGGPSGGCIPE-EFLDTPVDFE 446 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L ++GS +G+ +IVMD ++ F ESCG+C PCREGT M+ ++E++ Sbjct: 447 SLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKRMLEILEKIT 506 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G + +I+ L ++ I ++C LG A P+ +K FR E I Sbjct: 507 SGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHI 556 >gi|296132535|ref|YP_003639782.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296031113|gb|ADG81881.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 634 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 150/422 (35%), Positives = 237/422 (56%), Gaps = 9/422 (2%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 +Q + + + + ++ ++R + + K L ++ E+K + LRGRGGAGF TG Sbjct: 137 EQKIVLADCGLINPEDINQYLARDGYSALAKALSMKPAEVVAEIKDAKLRGRGGAGFPTG 196 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + S Y++ NADE +PG DR ++ PH +IEG +IA FA+GA + Sbjct: 197 VKWEICHQAVSPE-KYVICNADEGDPGAFMDRALLESNPHQVIEGLMIAGFAVGASKGYF 255 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180 YVR E+ L+ A+++ G+LGS+ S G+D++I G+GA++CGEETAL+ Sbjct: 256 YVRAEYPLAITRLRTALEQAREKGILGSSVLGSDFGFDIEIF--QGSGAFVCGEETALIA 313 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G P +PPFPA GL G PT +NNV++++ VP I+R+G W+ G ++ GT Sbjct: 314 SMEGKPGIPNHRPPFPAVSGLRGKPTVINNVKTLSYVPHIIRKGVDWFKSVGTPDSPGTA 373 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G V E M T LI GI+ AV GG S CLP + Sbjct: 374 VFALAGKVVSTGLAEVPMGTTLRTLIYDVGNGIKDD-KPFKAVQIGGPSGGCLPESSLDL 432 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I D+D L++ G+ +G+ ++V+ +++ F + ESCG+CT CR GT M+ Sbjct: 433 PI-DFDSLQQAGAMMGSGGLVVLSEDDCMVEIARYFLEFTQKESCGKCTFCRLGTKQMLE 491 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ + KG + +IDLL E+ ++I+ ++C+LG A P+ I+ FR E I Q Sbjct: 492 ILTDITKGQGKPEDIDLLLELGEDIKAGSLCSLGKTAPNPVLTTIRFFRHEYEAHI-QEK 550 Query: 421 RC 422 RC Sbjct: 551 RC 552 >gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] Length = 629 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/423 (38%), Positives = 251/423 (59%), Gaps = 11/423 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + +S G ++ ++K L + + +I+E+ S LRGRGG GF TG KW Sbjct: 150 VLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGGGFPTGYKW 209 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA +IYVR Sbjct: 210 SQVAGQ-EEKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGAQEGYIYVR 268 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ L+ A+++ GLLG + LG D +H GAGA++CGE +AL S+EG Sbjct: 269 AEYPLAISRLKRAIEQAEEYGLLGDHI-LGTDFSFHLHINKGAGAFVCGEGSALTASIEG 327 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +G PR+KPP GL+G PT +NNVE+ A VP I+ GA W+ G G E + GTK F++ Sbjct: 328 NRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSPGTKAFAL 387 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G VN+ +E M T E+I GGI+G + AV GG S CL + +D Sbjct: 388 TGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPHL-DVNLD 445 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D LK+MG+ +G+ ++VMD ST +++ F ++ESCG+C PCREGT M+ ++ER Sbjct: 446 FDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 505 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY---H 420 +V+G + ++DLL E++ I +C LG +AA P+ +K FR +E +D+ H Sbjct: 506 IVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVVDKKCASH 565 Query: 421 RCN 423 C+ Sbjct: 566 NCS 568 >gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 491 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 154/416 (37%), Positives = 234/416 (56%), Gaps = 5/416 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q RI T G + +S+ D ++ ++ + K+L +++ VK SGLRGRGGAGF TG Sbjct: 10 QLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFPTG 69 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW +D+ Y+V NADE +PG DR ++ +PH+++E I +AIGA + Sbjct: 70 IKWGIALGNKADQ-KYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATRGTV 128 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + L+ A+D+ GLLG N G+D DI + +GAGA++CGEETAL+ S+ Sbjct: 129 YIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIRSM 188 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G+P KPPFPA G + PT VNNVE+ A +P I+ GA W+SG G ++GTK+F Sbjct: 189 EGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTKVF 248 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G + +E M I+ E+I GG G AV GG S L + AI Sbjct: 249 ALAGKIQNVGLIEVPMGISLREVIFDIGGGCPDG-KAFKAVQTGGPSGGALANKDLDVAI 307 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + ++ Sbjct: 308 -DYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEIL 366 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +R+ KG + ++D L +S+ I+ +C LG PI + F E +D Sbjct: 367 DRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD 422 >gi|164430982|gb|ABY55763.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila silvestris] Length = 193 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/185 (69%), Positives = 148/185 (80%), Gaps = 1/185 (0%) Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 N GTKLF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 1 NSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHCGGVVGGWDNLLGVIPGGSSTPIIPK 60 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG Sbjct: 61 KVCDDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGI 120 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 GWM ++MER VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R Sbjct: 121 GWMNKIMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKR 180 Query: 416 IDQYH 420 + Q H Sbjct: 181 M-QLH 184 >gi|190345481|gb|EDK37373.2| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC 6260] Length = 243 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 122/177 (68%), Positives = 148/177 (83%) Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 SGHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIPGGSSVP +P +M Sbjct: 35 FSGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPVMPKHVCDNVLM 94 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W+ R+M+ Sbjct: 95 DYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESCGQCTPCREGTTWLQRMMD 154 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRPL+ ER+ QYH Sbjct: 155 RFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPLMVERMQQYH 211 >gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans Z-2901] gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 592 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 158/411 (38%), Positives = 243/411 (59%), Gaps = 5/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + D ++ G ++ + K+L +++E+K SGLRGRGG GF TG+KW Sbjct: 114 VLHNCGHINPERIEDYVANGGYEALRKVLTSMSPQEVVDEIKKSGLRGRGGGGFPTGLKW 173 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F D+ Y+V NADE +PG DR ++ +PH ++EG I +A+GA +IYVR Sbjct: 174 QFTRDAKGDK-KYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAVGADEGYIYVR 232 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + LQ A+ + G LG N G++ I + GAGA++CGEETALL S+EG Sbjct: 233 AEYPLAIKRLQIAIKQAEEKGYLGENIFGSGFNFRIKIKAGAGAFVCGEETALLTSIEGN 292 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA GL+G PT +NNVE+ A VP I++ GA WY+ G E ++GTK+F+++ Sbjct: 293 RGMPRPRPPFPAVKGLWGKPTNINNVETFANVPLIIKNGADWYASMGTEGSKGTKIFALT 352 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN VE M IT ++I GG G AV GG S CLP ++ +DY Sbjct: 353 GKVNNTGLVEVPMGITMRQIIFDI-GGGIKGGRKFKAVQIGGPSGGCLPE-ELLDLPVDY 410 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L + G+ +G+ ++VMD +T ++ F + ESCG+C PCREGT M+ ++E++ Sbjct: 411 DSLIKAGAMMGSGGLVVMDETTCMVDVAKFFLRFTQKESCGKCVPCREGTKRMLEILEKI 470 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G + +++ L +++ NI+ ++C LG A P+ ++ FR E I Sbjct: 471 TEGKGEPGDLETLEKLAYNIKNSSLCGLGQTAPNPVLSTLRYFRHEYEAHI 521 >gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] Length = 485 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 159/419 (37%), Positives = 237/419 (56%), Gaps = 9/419 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + +Q RI N + +++ D + + + K L R+ +I V S LRGRGG GF Sbjct: 1 MPEQVRIVLRNAGNIDPENIEDYLKNNGYLALAKALNSKREEVIQTVLDSNLRGRGGGGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F + D Y++ NADE +PG DR ++ +PH+++EG IA +AIGA Sbjct: 61 PTGLKWKFAMQAKGDE-KYVICNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAQK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+ + GLLG N S +D++I GAGA++CGEETA Sbjct: 120 GIIYIRAEYPLAVARLKVAISQAKDYGLLGENILGSNFSFDIEI--RLGAGAFVCGEETA 177 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P KPPFPAN GL+ PT +NNVE++A + I+ GA W+ FG EN+ Sbjct: 178 LIHSIEGLRGEPTNKPPFPANSGLWKKPTVINNVETLANIAPIILNGADWFKQFGTENSP 237 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M T E+I GGI+G AV GG S C+PA Sbjct: 238 GTKVFALAGDVKKVGLVEVPMGTTLREIIFDIGGGIKGD-KKFKAVQTGGPSGGCIPAEY 296 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DYD L+ +GS +G+ +IVMD T ++ F ESCG+CT CR G Sbjct: 297 LDTPI-DYDSLQALGSMMGSGGMIVMDEDTCMVDVAKFYLQFTVDESCGKCTTCRVGNVR 355 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++E++ G AQ ++D + ++ ++ ++C LG A PI + F +E I Sbjct: 356 LLEILEKITSGNAQLEDLDHMLTLANVVKNGSLCGLGQTAPNPILSTYRYFEDEYKEHI 414 >gi|170076827|ref|YP_001733465.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] gi|22652021|gb|AAN03565.1|AF381045_2 hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] gi|169884496|gb|ACA98209.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] Length = 534 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/390 (38%), Positives = 245/390 (62%), Gaps = 9/390 (2%) Query: 24 MSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 ++RG + ++ ++LE ++ E+ SGLRGRGG G+ TG+KW+ + K+ D+ Y+V Sbjct: 138 IARGGYRSLHQVLEDLTPMAVVEEITQSGLRGRGGGGYPTGLKWATVAKMPGDQ-KYVVC 196 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 NADE +PG DR ++ +PH ++EG IA +A+GA+ +IY+R E+ + L+ A+ + Sbjct: 197 NADEGDPGAFMDRAVLESDPHRVLEGMAIAGYAVGANHGYIYIRAEYPLAIQRLEKAIKQ 256 Query: 143 CYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + GLLGS NS + +DI + GAGA++CGEETAL+ S+EG +G PR +PP+PA Sbjct: 257 AKSKGLLGSQIFNSPFNFTIDIRI--GAGAFVCGEETALIASIEGGRGTPRPRPPYPAQS 314 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+G PT +NNVE+ A + I+R GA W+S G E ++GTK+F+++G V +E M Sbjct: 315 GLWGHPTLINNVETYANIVPIIREGADWFSSIGTEKSKGTKVFALTGKVKNNGLIEVPMG 374 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 +++E+ GGI + +V GG S C+PA + I +YD L ++G+ +G+ Sbjct: 375 TPVRQIVEQMGGGIPDSG-TVKSVQTGGPSGGCIPADYLDTPI-EYDSLIKLGTMMGSGG 432 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 +IVMD +T+++ F + ESCG+C PCR GT M ++ +++KG A+ ++I+LL Sbjct: 433 MIVMDEATNMVDVAKFYMEFCQCESCGKCIPCRAGTVQMSGLLSKMLKGQAEPKDIELLE 492 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ ++C LG +A PI ++ FR Sbjct: 493 QLCHMVKEASLCGLGQSAPNPILSTLRYFR 522 >gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 623 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 159/421 (37%), Positives = 242/421 (57%), Gaps = 9/421 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +S S+ +++G + + K+L E + + S LRGRGG G+ +G KW Sbjct: 145 VLKNCGSINAESFSEYVAKGGYKALGKVLFEMQPQEVCQSILDSNLRGRGGGGYPSGAKW 204 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + K S+ Y+V N DE +PG DR IM +PH +IEG IA +A + +IYVR Sbjct: 205 KQVLKQDSE-VKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKSTIGYIYVR 263 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E L+ A+++ G+LG N G+ DI ++ GAGA++CGE +AL S+EG+ Sbjct: 264 AEYPLAVERLKIAIEDARKHGMLGENILSSGFSFDININMGAGAFVCGEGSALTASIEGE 323 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP GL+ PT +NNVE+ A VP I+ G+ WY G EN+ GTK F+I+ Sbjct: 324 RGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPLIINNGSEWYKSIGPENSPGTKAFAIT 383 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G+VN+ +E M T E+I GGI+ G AV GG S CL + +D+ Sbjct: 384 GNVNHTGLIEVPMGTTLREVIFDIGGGIKNG-KKFKAVQIGGPSGGCLTEEHL-DLPLDF 441 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D LK +G+ +G+ ++VMD T +++ F ++ESCG+C PCREGT M+ ++E++ Sbjct: 442 DSLKRVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILEKI 501 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERID---QYHR 421 V G K ++DLL E++ I +C LG +AA P+ +K FR +E +D + H Sbjct: 502 VNGKGSKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVVDKKCKTHT 561 Query: 422 C 422 C Sbjct: 562 C 562 >gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans SSM1] gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans SSM1] Length = 596 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 162/402 (40%), Positives = 237/402 (58%), Gaps = 7/402 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + D ++ G ++ + K+L E + +I EVK SGLRGRGG GF TG+KW+F D Sbjct: 130 EDIDDYIAHGGYEAIKKVLKEMTPEEVIEEVKKSGLRGRGGGGFPTGLKWTFCRASKGDL 189 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ NADE +PG DR I+ PH +IEG +IA++AIG +IY R E+ + + Sbjct: 190 -KYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGCKEGYIYCRAEYPLAIKRV 248 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ G LG N LG D + +H GAGA++CGEETAL+ S+EG++G PR +PP Sbjct: 249 KKALKIAEERGFLGKNI-LGTDFEFHLHLKEGAGAFVCGEETALIASIEGERGMPRPRPP 307 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GL+G P+ VNNVE+ A +P I+ GA WY+ G E ++GTK+F++SG V + Sbjct: 308 FPAVKGLWGKPSNVNNVETFANLPLIINNGADWYASIGTEKSKGTKIFALSGKVKSTGLI 367 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M +T +L+ GGI + AV GG S CLP + I DYD L G+ Sbjct: 368 EVPMGVTVRQLVFDVGGGIPKK-RKIKAVQLGGPSGGCLPESLLDTPI-DYDSLIAAGAM 425 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ V+VMD + ++ F + ESCG+C PCR GT M+ ++ER+ G ++ + Sbjct: 426 MGSGGVVVMDETNCMVNVAKFFLTFTQRESCGKCIPCRIGTKTMLDILERICAGEGREGD 485 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 I+LL ++ +I+ ++C LG A P+ IK FR E I Sbjct: 486 IELLESLAMDIKTASLCGLGQTAPNPVLTTIKYFRHEYEAHI 527 >gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 488 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 219/369 (59%), Gaps = 6/369 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+E+ SGLRGRGGAGF TG+KW F K SD Y+V NADE +PG DR ++ +P Sbjct: 46 VIDEMTRSGLRGRGGAGFPTGVKWGFAAKYESDT-KYIVCNADEGDPGAFMDRAVLEGDP 104 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160 H+++EG ++A +A+GA+ IY+R E+ + L+ A+ + A GLLG + LG D D Sbjct: 105 HSVLEGMLVAGYAVGANHGVIYIRAEYPLAIKRLRTAIKQASAYGLLGEHI-LGSDFSFD 163 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + +GAGA++CGEETAL+ S++G +G+P KPPFPA G +G PT VNNVE++A VP I Sbjct: 164 IELKYGAGAFVCGEETALIRSIQGNRGEPYTKPPFPAESGYWGKPTIVNNVETLANVPAI 223 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + +GA W+S G +GTK+FS+ G + +E M IT E++ GG GG Sbjct: 224 MMKGADWFSSIGSPTAKGTKVFSLVGKITNVGLIEVPMGITLREVVFDIGGGCPGG-KKF 282 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S L + I DY+ L S +G+ +IVMD ++ F Sbjct: 283 KAVQTGGPSGGVLTYKDLDAPI-DYENLAARESIMGSGGMIVMDEDACMVAIAKFFLQFT 341 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+CTPCR G+ + +++++ G A + +++ L +++ I+ +C LG P Sbjct: 342 MDESCGKCTPCRVGSKRLWELLDKITLGQATEDDLETLVTLARTIKDTALCGLGQTMPNP 401 Query: 401 IQGLIKNFR 409 I ++ FR Sbjct: 402 ILSTVRVFR 410 >gi|37787352|gb|AAP50520.1| Hox1F [Thiocapsa roseopersicina] Length = 536 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 153/379 (40%), Positives = 238/379 (62%), Gaps = 8/379 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ EV SGLRGRGG G+ TG+KWS + K+ + + Y++ NADE +PG DR I+ +P Sbjct: 162 VLREVTDSGLRGRGGGGYPTGLKWSTVAKMPATQ-KYVICNADEGDPGAFMDRAILESDP 220 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDV 159 H ++EG IA++AIGA+ A++YVR E+ E LQ A+ + SGLLG+ K+G + + Sbjct: 221 HRVLEGMAIAAYAIGANKAYVYVRAEYPLAVERLQTAIRKAKRSGLLGN--KIGDTQFSL 278 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ + GAGA++CGEETAL+ S+EG +GQPR +PP+PA GL+G PT +NNVE+ A + Sbjct: 279 EVEIRLGAGAFVCGEETALMASIEGLRGQPRPRPPYPAEAGLWGYPTLINNVETFANIAP 338 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+R G W++ G E ++GTK+F+++G + +E M + ++IE GGI GG Sbjct: 339 IVREGGDWFASIGTERSKGTKVFALAGTITNTGLIEVPMGTSLRDIIEVIGGGIPGG-KA 397 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + A+ DYD LK +G+ +G+ +IVMD ++ ++ F Sbjct: 398 FKAVQTGGPSGGCIPAQHLDIAV-DYDSLKTLGTMMGSGGMIVMDETSSMVDVARYFMEF 456 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+C PCR GT M +++RL K A + E+ LL E+ + ++ ++C LG A Sbjct: 457 CMTESCGKCIPCRTGTQQMHSILDRLAKSQATRAELTLLEELCEVVQATSLCGLGQTAPN 516 Query: 400 PIQGLIKNFRPLIEERIDQ 418 P+ ++ FR E ++ + Sbjct: 517 PVLSTMRYFRDEYEAKLGE 535 >gi|73748098|ref|YP_307337.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] gi|147668874|ref|YP_001213692.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|289432124|ref|YP_003461997.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|73659814|emb|CAI82421.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] gi|146269822|gb|ABQ16814.1| NADH dehydrogenase subunit F [Dehalococcoides sp. BAV1] gi|288945844|gb|ADC73541.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 417 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 222/387 (57%), Gaps = 9/387 (2%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 ++ G + + K L + +I EVK S L GRGGA F TG+KW K ++ P Y+V N Sbjct: 23 LADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEKAN-PKYIVCN 81 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 A E EPGT KDR I++++PH ++EG +IA++A+G FI+ R + +E E Q A+D+ Sbjct: 82 ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTQEIELFQKAIDQA 141 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 G LG N + +DI + AGAYICGEETAL ESLEG +G P +PP+P VGL Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPATRPPYPVQVGLM 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PTTVNNVE++ +P I+ GA W++ G + GTKLF +SG+V P E + Sbjct: 202 DKPTTVNNVETLCNIPAIINNGADWFASIGHPDYPGTKLFCLSGNVKKPGVFELPLGTNL 261 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +L+E GG+ G + AV+PGG S L + +D+ L + G+ LG+ AVIV Sbjct: 262 KDLLEAG-GGVDGKFK---AVLPGGISSSLLTETDIS---LDFKTLAKAGTMLGSGAVIV 314 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 ++ T ++ ++ F+ E CG+C+ CREGT ++ R +G + E++ L E+ Sbjct: 315 INSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILSRFSRGQGNRNELEWLLELH 374 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ C LG A I+NF+ Sbjct: 375 EVMKDTASCGLGQVALNVAASAIRNFK 401 >gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum] Length = 597 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 156/398 (39%), Positives = 235/398 (59%), Gaps = 6/398 (1%) Query: 15 LQGKSLSDSMSRGH-WDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 +Q + ++D + ++ + K + K R+ +I E+K SGLRGRGG GF TG+KW F Sbjct: 126 IQAEDINDYIETAEGYEAIKKAITKMTREDVIEEIKRSGLRGRGGGGFPTGLKWQFAYNA 185 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 D+ Y++ NADE +PG DR ++ +PH +IE +I +AIGA+ +IY+R E+ Sbjct: 186 PGDQ-KYVICNADEGDPGAFMDRSVLEGDPHAVIEAMMITGYAIGANHGYIYIRAEYPVA 244 Query: 133 RESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+ + SG LG N ++ DI + GAGA++CGEETAL+ S+EGK+G Sbjct: 245 IKRLEIALAQARESGYLGKNVMGTDFEFDIELKLGAGAFVCGEETALINSIEGKRGMANP 304 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFPAN G++ PT +NNVE++A VP I+ +GA W++ G E ++GTK+F++ G +N Sbjct: 305 KPPFPANEGVWKKPTIINNVETLANVPKIILKGADWFASIGTEKSKGTKVFALGGKINNV 364 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 VE M T E+I + GGI G AV GG S C+ A + I D+D L + Sbjct: 365 GLVEVPMGTTLREIIYEVGGGIPNG-KAFKAVQTGGPSGGCITADYLDTQI-DFDSLTAL 422 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +G+ +IVMD ++ F ESCG+CTPCREGT M+ ++ER+ +G Sbjct: 423 GSMMGSGGMIVMDEDNCMVDIAKFFLDFTVEESCGKCTPCREGTKRMLEILERISEGHGT 482 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++D L ++ I+ +C LG A P+ +K FR Sbjct: 483 LEDLDKLERLANTIKSTALCGLGQTAPNPVLSTLKYFR 520 >gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] Length = 626 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 157/410 (38%), Positives = 245/410 (59%), Gaps = 10/410 (2%) Query: 4 DQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61 +Q+RI N L + +++ ++ ++ + ++L + D I+E+K SGLRGRGG GF Sbjct: 143 NQERIALRNCGLLNPEDITEYIAMNGYEALGRVLTQMTPDSTIDEIKKSGLRGRGGGGFP 202 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K SD +++ NADE +PG DR I+ +P++++E IA + IGA+ Sbjct: 203 TGVKWEMTRKSKSDT-KFMICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGANKG 261 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ L+ A+ + Y GLLG N + + +D+ +GAGA+ICGEETAL Sbjct: 262 YIYIRAEYPLAINRLKIALKQAYNLGLLGDNILGTNFSFHIDL--KYGAGAFICGEETAL 319 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG +G+P +KPPFP+ +GL+ PT +NNVE++A +P I+ +G+ W+S G E ++G Sbjct: 320 INSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIPPIILKGSKWFSSIGTEKSKG 379 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G +N VE M IT E+I GGIRGG AV GG S C+PA + Sbjct: 380 TKVFALAGKINNVGLVEVPMGITLREIIYNLGGGIRGG-KKFKAVQTGGPSGGCIPADHL 438 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AI DY+ L E+GS +G+ +IVMD ++ F ESCG+CT CR G + Sbjct: 439 DTAI-DYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGKCTACRIGNKRL 497 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++E + KG ++ L ++S I+ +C LG + PI +K F Sbjct: 498 LEILEDITKGKGTMEHLEGLKDLSYVIKDSALCGLGQTSPNPIISTMKFF 547 >gi|312144096|ref|YP_003995542.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] gi|311904747|gb|ADQ15188.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] Length = 410 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 153/396 (38%), Positives = 234/396 (59%), Gaps = 7/396 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 L+G L D + H++++ L R+ II +VK S L+GRGGAGF TG+KW F + + Sbjct: 8 LKGDRLDD-VDNYHFNSIKNALTMSREEIIQKVKDSELKGRGGAGFPTGLKWQFAKDIDN 66 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D YLV N DE EPGT KDR ++ P ++EG +IA++A+GA A+IY+RGE+I + Sbjct: 67 DN-KYLVCNGDEGEPGTFKDRYLLEERPLKVLEGIMIAAYAVGAARAYIYIRGEYINAIK 125 Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q +D+ +LG N + +++ + GAGAY+CG+ET+LL S+EGK+G+ R+KP Sbjct: 126 KFQDVIDKAEKKNILGENIFSSDFSLELRLVRGAGAYVCGDETSLLNSIEGKRGRSRIKP 185 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+P GL+ PT VNNVES+ I + +S G E +RGTKL S+SG VN P Sbjct: 186 PYPIQKGLFDNPTVVNNVESLCCAAEIFNEDSVEFSELGVEGSRGTKLISLSGDVNAPGL 245 Query: 254 VE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E E +T +++I K G+RG + L +IPGG S + A + Y +++G Sbjct: 246 YEIEFAKVTLNDIIYKLGQGMRGS-ETLSFIIPGGVSTALIKAEDLELPYT-YQTFEKLG 303 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVI ++ S D++ + +S FY E+CG C PCREG + R+++R K + Sbjct: 304 SSLGSGAVIAVNESHDLLDLMLNVSRFYMDETCGTCFPCREGNRQINRILKR-YKDNESE 362 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + +L+ ++ I+ C LG ++ I +I N+ Sbjct: 363 LDFELINDIGNTIKLAARCGLGQSSLSFISSVINNY 398 >gi|270307597|ref|YP_003329655.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] gi|270153489|gb|ACZ61327.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] Length = 417 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 221/387 (57%), Gaps = 9/387 (2%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 ++ G + + K L + +I EVK S L GRGGA F TG+KW K ++ P Y+V N Sbjct: 23 LADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEKAN-PKYIVCN 81 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 A E EPGT KDR I++++PH ++EG +IA++A+G FI+ R + E E Q A+D+ Sbjct: 82 ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTEEIELFQKAIDQA 141 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 G LG N + +DI + AGAYICGEETAL ESLEG +G P +PP+P VGL Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPAARPPYPVQVGLM 201 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PTTVNNVE++ VP I+ GA W++ G + GTKLF +SG+V P E + Sbjct: 202 DKPTTVNNVETLCNVPAIINNGADWFASIGHPDYPGTKLFCLSGNVKEPGVFEMPLGTNL 261 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +L+E GG+ G + AV+PGG S L + +D+ L + G+ LG+ AVIV Sbjct: 262 KDLLEAG-GGVDGKFK---AVLPGGISSSLLTETDIS---LDFKTLAKAGTMLGSGAVIV 314 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 ++ T ++ ++ F+ E CG+C+ CREGT ++ R +G + E++ L E+ Sbjct: 315 INSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILSRFSRGQGNRNELEWLLELH 374 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ C LG A I+NF+ Sbjct: 375 EVMKDTASCGLGQVALNVAASAIRNFK 401 >gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4] Length = 597 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 228/394 (57%), Gaps = 6/394 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++ ++++R + + K L E + ++ E+K SGLRGRGGAGF TG+KW K Sbjct: 128 ENIEEAIARDGYAALGKCLTEMTPEQVVAEIKKSGLRGRGGAGFPTGLKWEIAAKSRPGE 187 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V NADE +PG DR ++ +PH+++E I + IGA IY+R E+ L Sbjct: 188 QKYVVCNADEGDPGAFMDRSLLEGDPHSILEAMAICGYCIGADKGLIYIRAEYPLAIHRL 247 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q A+ + GLLG + G++ +I + +GAGA++CGEETAL+ S+EGK+G+P KPPF Sbjct: 248 QVAIQQAEEYGLLGKDILGTGFNFEIELRYGAGAFVCGEETALIHSMEGKRGEPTFKPPF 307 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G G PT VNNVE+ A +P I+ +GA W++ G E ++GTK+F+++G +N +E Sbjct: 308 PAQSGYLGKPTNVNNVETYANIPVIINKGADWFASIGTEKSKGTKVFALAGKINNVGLIE 367 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT E+I + GG G AV GG S CL + I DYD L GS + Sbjct: 368 VPMGITLREIIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DYDSLVAAGSMM 425 Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 G+ +IVMD D + AI + + F ESCG+CTPCR G ++ ++ ++ G + Sbjct: 426 GSGGMIVMDED-DCMVAIAKFYLGFTVDESCGKCTPCRVGNRRLLEILTKITDGNGTMED 484 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ L +S I+ +C LG + P+ I NF Sbjct: 485 LEELKNLSAVIKDTALCGLGQTSPNPVLSTINNF 518 >gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 650 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 152/385 (39%), Positives = 230/385 (59%), Gaps = 6/385 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G++ D +L K +I+ V SGLRGRGGAGF TG KW + + P ++V NADE Sbjct: 166 GYFALADVVLNKKPQEVIDTVIKSGLRGRGGAGFPTGRKWE-LAAAQNVTPKFVVCNADE 224 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR I+ +PH+++E IA + GA +IYVR E+ E L+ A+++ + Sbjct: 225 GDPGAFMDRSILEGDPHSVLEAMAIAGYCTGAGQGYIYVRAEYPIAVERLEIAINQAKEA 284 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GLLG ++ DI + GAGA++CGEETALL+S+ G++G+PR +PP+PA GL+G P Sbjct: 285 GLLGRGIFGTTFEFDIDLRFGAGAFVCGEETALLQSVMGQRGEPRPRPPYPAQEGLWGKP 344 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NNVE+ A +P ILR G WY G G +++G+K+FS++G +N +E M T + Sbjct: 345 TLINNVETYANIPVILREGWEWYYGHGTASSKGSKVFSLAGKINNTGLIEVPMGTTL-KT 403 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 I GG G AV GG S C+P + + DY+ LKE+GS +G+ +IVM Sbjct: 404 IIFDIGGGITGGKKFKAVQTGGPSGGCIPEKYLDLPV-DYESLKEIGSIMGSGGMIVMSE 462 Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 D + I R + F + ESCG+CTPCR GT ++ ++ + G + ++DLL E++ + Sbjct: 463 D-DCMVDIARFYLEFTQDESCGRCTPCRVGTKRLLEILRIITGGKGEMEDLDLLEELAGD 521 Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409 I ++C LG A P+ +++FR Sbjct: 522 IRDASLCGLGQTAPNPVLSTLRHFR 546 >gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 588 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 158/419 (37%), Positives = 239/419 (57%), Gaps = 6/419 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q+R+ N G + +++ + ++ G + + L + II E++A+ LRGRGG GF TG Sbjct: 108 QERVVINRSGFIDPENIDEYLNSGGYQALQLGLTMEPEDIITEIQAANLRGRGGGGFPTG 167 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + K Y+V NADE +PG DR I+ +PH +IEG IA AIGA+ I Sbjct: 168 LKWEYAKKGDEKTEKYVVCNADEGDPGAFMDRSILEGDPHVVIEGMAIAGLAIGANRGII 227 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLES 181 YVR E+ + L+ A+ + G LG LG + DI + GAGA++CGEETAL+ES Sbjct: 228 YVRAEYPLAVKRLEKAISQAKEYGYLGERV-LGSNFSFDIEIKQGAGAFVCGEETALIES 286 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 + G +G PR +PPFPA GLY PT +NNVE++A +P IL GA Y+ G ++++GTK+ Sbjct: 287 VHGNRGMPRPRPPFPAEKGLYDSPTILNNVETLANIPVILNWGAQKYNELGTKDSKGTKV 346 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+I+G V E M I +LI GGI+ + AV GG S CLP + Sbjct: 347 FAITGKVRNTGLCEVPMGIKLKDLIFDIGGGIKDDKE-FKAVQIGGPSGGCLPQESLDFP 405 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I +YD L + G+ +G+ ++VMD ST ++ F + ESCG+C PCREGT ++ + Sbjct: 406 I-EYDSLIDAGAMMGSGGLVVMDTSTCMVDLSRFFLNFTQSESCGKCNPCREGTKRLLEI 464 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + R++ G + ++ +L + NI ++C LG +A P+ I+ F E I+ + Sbjct: 465 LNRIIDGYGENEDLKILNRLGNNIINTSLCGLGQSAPNPVLSTIRYFENEYLEHINNKY 523 >gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] Length = 573 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 149/379 (39%), Positives = 219/379 (57%), Gaps = 16/379 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ + +I+ + +SGLRG GGAGF G KW+ + + P + VN DE EPGT KDR Sbjct: 205 QRTVESVIDTLSSSGLRGLGGAGFPAGKKWAIVRE--QTAPRLMAVNIDEGEPGTFKDRS 262 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + PH +EG +IA++A+ A +IY+R E+ R LQ + LL + + Sbjct: 263 YLERNPHQFLEGMLIAAWAVNASAIYIYLRDEYHACRSMLQNEL------ALLKAKPPMP 316 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + GAGAYICGEE+A+LES+EGK+G PRL+PP+ A VGL+ PT V+N E++ Sbjct: 317 NMPVIELRRGAGAYICGEESAMLESIEGKRGLPRLRPPYVAQVGLFNKPTLVHNFETLYW 376 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 VP IL +GA W++ GR G + FS+SG VN P IT +ELI ++CGG++ G Sbjct: 377 VPVILEKGAQWFASQGRHGRGGFRSFSVSGRVNKPGIHLAPAGITLNELISEYCGGMQTG 436 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L +PGG+S LPA + +D+D L+ G +G+AA++V ++ + L Sbjct: 437 -HTLYGYLPGGASGGILPA-VLADVPLDFDTLQPHGCFIGSAAIVVFSQADSAVNMARNL 494 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 F+ HESCGQCTPCR GT + ++ + + + LL E+S + +IC LG A Sbjct: 495 MRFFVHESCGQCTPCRTGTAKALALINQ------PQWNVPLLQELSAVMRDASICGLGQA 548 Query: 397 AAWPIQGLIKNFRPLIEER 415 A PI +I+ F +E R Sbjct: 549 APNPIDCVIRYFPQELESR 567 >gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] Length = 626 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 157/393 (39%), Positives = 229/393 (58%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D ++RG ++++ K L + II VKASGLRGRGG GF TG+KW F K D Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R +++ +PH ++EG +IA +A+GA + Y+R E+ + Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLKRDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVRMFK 278 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GLLG N G+ D+ V GAGA++CGEETALL S+EGK+G PR KPPFP Sbjct: 279 KAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A +P ILR G Y G EN+ GTK+FS++G + +E Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++I CGG G + AV GG S CL + +DYD LK+ + +G Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFIDMPLDYDTLKKADAMVG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + T +++ F K ESCG+C PCREGT ++E+ G A ++ Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +SK I+ ++C LG A PI +K FR Sbjct: 517 ALEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549 >gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] Length = 626 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 157/393 (39%), Positives = 228/393 (58%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D ++RG ++++ K L + II VKASGLRGRGG GF TG+KW + K D Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEYTGKARGDL- 218 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R ++ +PH ++EG +IA +A+GA + Y+R E+ + Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVRMFK 278 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GLLG N G+ D+ V GAGA++CGEETALL S+EGK+G PR KPPFP Sbjct: 279 KAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL G PT +NNVE+ A VP +LR G Y G EN+ GTK+FS++G + +E Sbjct: 339 AQSGLLGKPTLINNVETYANVPRVLRDGVEEYRKRGTENSPGTKMFSVAGPLKATGIIEV 398 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T E+I CGG G + AV GG S CL + +DYD LK+ + +G Sbjct: 399 EFGTTLREIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFLDMPLDYDTLKKADAMVG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + T +++ F K ESCG+C PCREGT ++E+ G A +++ Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLE 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +SK I+ ++C LG A PI +K FR Sbjct: 517 TLEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549 >gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 631 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 161/382 (42%), Positives = 229/382 (59%), Gaps = 7/382 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ E+KASGLRGRGG GF TGMKW F K + Y+V NADE +PG DR I+ +P Sbjct: 190 VVAEIKASGLRGRGGGGFPTGMKWDFTAKA-EGKEKYVVCNADEGDPGAFMDRSILEGDP 248 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160 + LIE +I+ +A+GA ++YVR E+ L A+ + GLLGSN LG D D Sbjct: 249 NALIEAMIISGYAVGAQWGYVYVRAEYPIAVGRLDLAIKQAREKGLLGSNI-LGTDFSFD 307 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + + GAGA++CGEETALL S+EGK+G PR +PPFPA GL+G PT +NNVE+ A +P I Sbjct: 308 MEIRLGAGAFVCGEETALLNSIEGKRGMPRPRPPFPAVKGLWGKPTLINNVETFANIPQI 367 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + GA + G E ++GTK+F++ G +N+ VE M T E++ + GGI G Sbjct: 368 ILHGAEEFIKTGTEKSKGTKVFALGGKINHTGLVEIPMGTTLREIVYEIGGGIPNG-KAF 426 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S C+ + I DYD L +GS +G+ +IVMD ++ F Sbjct: 427 KAVQTGGPSGGCISVEHLDTPI-DYDNLIALGSMMGSGGMIVMDEDNCMVDIARFFLDFT 485 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+CTPCREGT M+ ++ER+ +G ++ +I+ L ++++I+ ++C LG A P Sbjct: 486 VDESCGKCTPCREGTKRMLEILERITEGKGKEGDIERLESLAQSIKISSLCGLGQTAPNP 545 Query: 401 IQGLIKNFRPLIEERIDQYHRC 422 I +K FR E I Q +C Sbjct: 546 ILSTLKYFRHEYEAHI-QDKKC 566 >gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 645 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 161/387 (41%), Positives = 236/387 (60%), Gaps = 10/387 (2%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G++ D I K +I + SGLRGRGG GF TG KW+F + D P Y+V NADE Sbjct: 165 GYFALYDVIHNKKPQEVIEIISKSGLRGRGGGGFPTGKKWAFTAQA-KDFPKYVVCNADE 223 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR I+ +PH+++E IA ++IGA+ IYVR E+ + L+ A+ + Sbjct: 224 GDPGAFMDRSILEGDPHSVLEAMAIAGYSIGANQGIIYVRAEYPIAIKRLELAIRQAREM 283 Query: 147 GLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLGS +S+ +D+D+ + GAGA++CGEETALL+S G++G+PR +PPFPA G Sbjct: 284 GLLGSRLFDSEFSFDIDLRL--GAGAFVCGEETALLKSAMGQRGEPRPRPPFPAVCGFRN 341 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT +NNVE+ A VP ILR+G +WY+ G E +GTK+FSI+G +N +E M T Sbjct: 342 KPTLLNNVETYANVPIILRKGWAWYAAMGTETCKGTKVFSIAGKINNTGLIEVPMGTTLR 401 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 +I GGI GG AV GG S +PA + I DY+ L + GS +G+ +IVM Sbjct: 402 TIIYDIGGGIPGGR-AFKAVQTGGPSGGVIPAHLLDTPI-DYESLSQAGSMMGSGGLIVM 459 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D TD + I + + F + ESCG+CTPCR GT M+ +MER+ +G + ++++ L E++ Sbjct: 460 D-ETDCMVDIAKFYLQFSQDESCGKCTPCRIGTKRMLEIMERITQGKGEMKDLEELEELA 518 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409 +I+ ++C LG A P+ ++ FR Sbjct: 519 GDIKDASLCGLGQTAPNPVLSTLRFFR 545 >gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4] gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4] Length = 626 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 157/410 (38%), Positives = 234/410 (57%), Gaps = 9/410 (2%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ +Q +SL++ + + + K I + + II+E+K SGLRGRGGAGF TG KW Sbjct: 152 NVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGAGFPTGRKWESA 211 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 KV + Y++ NADE +PG DR I+ +PH+++EG I AIGA+ FIYVR E+ Sbjct: 212 YKV-ENSQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGANQGFIYVRAEY 270 Query: 130 IRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + L+ A+ + LLG N S +D+++ G+GA++CGE TAL+ES+EG++ Sbjct: 271 PIAVKRLRIAIQQAKEMNLLGDNIFGSDFSFDIEL--RLGSGAFVCGEGTALMESIEGRR 328 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR K A GL+ PT +NNVE+ A VP I+ RGA W++ FG E + GTK+F++ G Sbjct: 329 GMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSPGTKVFALGG 388 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V VE M T E+I GGI+ G AV GG S C+P + +D++ Sbjct: 389 KVVNTGLVEVPMGSTLREIIFDIGGGIKDG-KKFKAVQTGGPSGGCIPE-EFLDTPVDFE 446 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L ++GS +G+ +IVMD ++ F ESCG+C PCREGT M+ ++E++ Sbjct: 447 SLGKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKRMLEILEKIT 506 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G + +I+ L ++ I ++C LG A P+ +K FR E I Sbjct: 507 SGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHI 556 >gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] Length = 598 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 162/416 (38%), Positives = 247/416 (59%), Gaps = 5/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTG 63 Q + +N + +S+ + +++ + V ++L +I+E+K SGLRGRGG GF TG Sbjct: 118 QRVVLSNCGKINPESIEEYIAQDGYQAVGEVLTTMEPQEVIDEIKKSGLRGRGGGGFPTG 177 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F D+ Y++ NADE +PG DR ++ +PH L+EG +IA +AIGA +I Sbjct: 178 VKWQFAYDAEGDK-KYIICNADEGDPGAFMDRSLLEGDPHKLLEGMIIAGYAIGADEGYI 236 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ E L+ A+D+ GLLG N + D+ + GAGA++CGEETAL+ S+ Sbjct: 237 YVRAEYPLAIERLEKAIDQANEHGLLGENLFGTDFSFDLQIKAGAGAFVCGEETALMASI 296 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++G PR +PPFPA GL+G PT +NNVE+ VP I+ GA +S G E+++GTK+F Sbjct: 297 EGERGMPRPRPPFPAQKGLWGKPTNINNVETYGNVPEIINNGAEAFSEIGTEDSKGTKVF 356 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G +N E M IT E+I+ GGI G D AV GG S CLP ++ I Sbjct: 357 ALTGKINNTGLAEVPMGITMREIIDDIGGGIDEGKD-FKAVQIGGPSGGCLPEEKLDLPI 415 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DYD L + G+ +G+ ++VMD T ++ F ESCG+CTPCREGT M+ ++ Sbjct: 416 -DYDSLLDAGAMMGSGGLVVMDEDTCMVDVARFFLNFTVSESCGKCTPCREGTKRMLEIL 474 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 E++ G +ID L +++ I+ ++C LG A P+ ++ FR E +++ Sbjct: 475 EKITDGEGTLADIDKLESLAETIKTASLCGLGQTAPNPVLSTLRYFRDEYEAHVEE 530 >gi|148657645|ref|YP_001277850.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1] gi|148569755|gb|ABQ91900.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1] Length = 537 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 236/370 (63%), Gaps = 9/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ V SGLRGRGGAG+ TG+KW+ + K DR Y+V NADE +PG DR I+ +P Sbjct: 155 VIDVVTRSGLRGRGGAGYPTGLKWATVAKSHGDR-KYVVCNADEGDPGAFMDRSIIESDP 213 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159 H ++EG IA++A+GA ++YVR E+ + LQ A+ + GLLG+ +S + + Sbjct: 214 HKVLEGMAIAAYAVGADQGYVYVRAEYPLAIQRLQRAIAQARRHGLLGAQIFDSGFTFRI 273 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI V GAGA++CGEETAL+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A +P Sbjct: 274 DIRV--GAGAFVCGEETALMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPP 331 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+R GA W++ G E ++GTK+F+++G + + +E M +T +++E+ GG+ G Sbjct: 332 IIRNGAEWFAAIGAETSKGTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPDG--R 389 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AV GG S C+PA + + DY+ L+ +GS +G+ ++VMD +T+++ F Sbjct: 390 VKAVQTGGPSGGCIPAALLDTPV-DYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEF 448 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 K ESCG+C PCR GT M+ +++ + G A +++ L ++ ++ ++C LG +A Sbjct: 449 CKDESCGKCIPCRAGTAQMLHMLDLIRAGQATIADLEQLEQLCVMVKETSLCGLGQSAPN 508 Query: 400 PIQGLIKNFR 409 P+ ++ FR Sbjct: 509 PVLSTMRYFR 518 >gi|218244989|ref|YP_002370360.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801] gi|218165467|gb|ACK64204.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801] Length = 535 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 150/406 (36%), Positives = 248/406 (61%), Gaps = 9/406 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +S+ + +SRG + + ++L E + +I EV SGLRGRGG G+ TG+KW Sbjct: 125 VLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGGGYPTGVKW 184 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K+ + + Y++ NADE +PG DR I+ +PH ++EG IA +A+GA+ +IY+R Sbjct: 185 ATVAKMPTQQ-KYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGANHGYIYIR 243 Query: 127 GEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 E+ + L+ A+ + GL+G +S + +DI V GAGA++CGEETAL+ S+E Sbjct: 244 AEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRV--GAGAFVCGEETALMASVE 301 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G P +PP+PA GL+G PT +NNVE+ A + I+R G +WY+ G E ++GTK+F+ Sbjct: 302 GKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGAWYASIGTEKSKGTKVFA 361 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ++G V +E M T E++E+ GG+ G + + AV GG S C+P + + Sbjct: 362 LTGKVKNIGLIEVPMGTTIREIVEEIGGGVSDG-EKVKAVQTGGPSGGCIPE-HLFDTPV 419 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 +YD L+++G+ +G+ +IVMD ST +++ F + ESCG+C PCR GT + ++ Sbjct: 420 EYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQLYNLLT 479 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +LV+G A R++ L + + ++ ++C LG A P+ + FR Sbjct: 480 KLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFR 525 >gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] Length = 626 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 150/385 (38%), Positives = 210/385 (54%), Gaps = 16/385 (4%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 L++ D + E+K S LRGRGGAGFSTGMKW F D HY+V NADE EPGT KDR Sbjct: 220 LDRAADATLQEIKISKLRGRGGAGFSTGMKWEFCRNAKGD-AHYVVCNADEGEPGTFKDR 278 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--S 153 ++ + EG + ++ IGA F+Y+RGE+ LQA + LLGS Sbjct: 279 VLLNSYADLVFEGMTLCAYVIGAKKGFLYLRGEYRYLLAPLQAVLQRRREQNLLGSRILG 338 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + +D DI +H GAGAYICGEE+AL+ESLEGK+G PR +PP+P G PT V+NVE+ Sbjct: 339 QAAFDFDIEIHLGAGAYICGEESALIESLEGKRGTPRNRPPYPVTAGYLNQPTVVSNVET 398 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A I G +WY+G G EN+ G+KLFS+SG +YP E +T +++ CG Sbjct: 399 FASTSLISLHGGAWYAGIGAENSSGSKLFSVSGDCDYPGIYEYPFGVTVAQVLAD-CGA- 456 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 N AV G S C+ A + I +D + G A +V D+ D+ + Sbjct: 457 ----KNTQAVQISGPSGMCIAAHEFDRRI-SFDDIPTAG------AFMVFDQRRDMFEVA 505 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F+ HESCG CTPCR GT + +M++L +G ++ + ++ ++ + C L Sbjct: 506 RNFVHFFAHESCGFCTPCRVGTALLSNLMDKLNEGQGSPYDLAEIEKLDSLLQSTSHCGL 565 Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418 G A P+ + FRP E R+ Sbjct: 566 GRTACNPVLHTLAKFRPAYECRLSH 590 >gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 626 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 157/393 (39%), Positives = 229/393 (58%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D ++RG ++++ K L + II VKASGLRGRGG GF TG+KW F K D Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R ++ +PH ++EG +IA +A+GA + Y+R E+ + + Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVKMFK 278 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GLLG N G+ D+ V GAGA++CGEETALL S+EGK+G PR KPPFP Sbjct: 279 KAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A +P ILR G Y G EN+ GTK+FS++G + +E Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++I CGG G + AV GG S CL + +DYD LK+ + +G Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSRACL-SEDFIDMPLDYDTLKKADAMVG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + T +++ F K ESCG+C PCREGT ++E+ G A ++ Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +SK I+ ++C LG A PI +K FR Sbjct: 517 ALEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549 >gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521] gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521] gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 656 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 224/370 (60%), Gaps = 7/370 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+E+ S LRGRGG GF TG+KWS + K ++ Y+V N DE +PG DR +M EP Sbjct: 213 IIDEISESSLRGRGGGGFPTGIKWSQVYKQ-NEHDKYIVCNGDEGDPGAFMDRSMMEGEP 271 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161 H +IEG +IA A GAH +IYVR E+ E L+ A+++ + GLLG N G+D +I Sbjct: 272 HRIIEGMIIAGIATGAHEGYIYVRAEYPLAVERLEKAIEQAESKGLLGDNILNSGFDFNI 331 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGE +AL S+EG +G PR+KPP GL+G PT +NNVE+ VP I+ Sbjct: 332 RISKGAGAFVCGEGSALTTSIEGSRGMPRVKPPRTVEKGLFGKPTVLNNVETFCNVPPII 391 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +GA+WY G ENN GTK F+++G+V + +E M E++ GG++ G Sbjct: 392 LKGANWYKTIGTENNYGTKAFALTGNVKHTGLIEVPMGTPLREIVFHIGGGVKDG--EFK 449 Query: 282 AVIPGGSSVPCL--PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S CL AG + +D+D LK++G+ +G+ ++VM+ + +++ F Sbjct: 450 AVQIGGPSGGCLCVNAGHL-DLKLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNF 508 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ++ESCG+C PCR GT M+ ++ +V+G I++L E+S I +C LG +A Sbjct: 509 TQNESCGKCVPCRAGTKRMLEILTDIVEGRGTNEHINMLEELSDTISATALCGLGKSACL 568 Query: 400 PIQGLIKNFR 409 P++ +K F+ Sbjct: 569 PVKSTLKYFK 578 >gi|182677976|ref|YP_001832122.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] gi|182633859|gb|ACB94633.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] Length = 516 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 158/414 (38%), Positives = 235/414 (56%), Gaps = 13/414 (3%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + +SL D ++ G + + + L+ G +I EV SGLRGRGGAGF Sbjct: 99 LAKQQRLTFARCGIVDPRSLEDYLAHGGYRGLARALDLGPAAMIEEVVESGLRGRGGAGF 158 Query: 61 STGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 TG+KW V +P Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 159 PTGIKWR---TVAQTKPGQKYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGA 215 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEE 175 +IY+R E+ +++AA++ + LGSN S+ +D+++ V GAGAY+CGEE Sbjct: 216 TKGYIYIRSEYPHAVHAMEAAIEAARRADYLGSNVAGSEWAFDIEVRV--GAGAYVCGEE 273 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TALLESLEGK+G R KPP PA+VGL+GCPT +NNV S+A VP IL +GA Y +G Sbjct: 274 TALLESLEGKRGLVRAKPPLPAHVGLFGCPTVINNVMSLATVPFILAQGAKTYQDYGMGR 333 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 +RGT ++G+V + VE + +T EL+E GG R G + AV GG P Sbjct: 334 SRGTMPIQLAGNVKHGGLVEIAFGVTLGELVEGFGGGTRSG-RPVRAVQVGGPLGAYFPV 392 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + DY+ +G ++V D + D++K F HESCG+CTPCR G+ Sbjct: 393 -DLFDTPFDYEAFAARDGLIGHGGIVVFDDTVDMLKQARFAMEFCAHESCGKCTPCRIGS 451 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++++ G+ + + L+ ++ + ++ ++CALG +P+ + +F+ Sbjct: 452 TRGAETLDKIAHGMEAEHNLALVKDLCETMKFGSLCALGGFTPYPVMSALTHFQ 505 >gi|146419679|ref|XP_001485800.1| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC 6260] Length = 243 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 127/195 (65%), Positives = 155/195 (79%), Gaps = 3/195 (1%) Query: 229 SGFGRENNRGTKLFSIS---GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285 SG R + T+ S S GHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIP Sbjct: 17 SGLRRLVVKETREPSCSVFLGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIP 76 Query: 286 GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC 345 GGSSVP +P +MDYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESC Sbjct: 77 GGSSVPVMPKHVCDNVLMDYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESC 136 Query: 346 GQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 GQCTPCREGT W+ R+M+R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLI Sbjct: 137 GQCTPCREGTTWLQRMMDRFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLI 196 Query: 406 KNFRPLIEERIDQYH 420 K+FRPL+ ER+ QYH Sbjct: 197 KSFRPLMVERMQQYH 211 >gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large subunit [Anabaena variabilis] Length = 541 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 141/390 (36%), Positives = 239/390 (61%), Gaps = 13/390 (3%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 ++G+ + E + +++ + SGLRGRGGAG+ TG+KW+ + K +R +++ NA Sbjct: 146 AQGYRSLYHVLREMTANEVVDTITRSGLRGRGGAGYPTGLKWATVAKAQGER-KFVICNA 204 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE +PG DR ++ +PH ++EG IA++A+ +IY+R E+ LQ A+ + Sbjct: 205 DEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVRKQ-GYIYIRAEYPVAINRLQTAIRQAQ 263 Query: 145 ASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 G+LG+ +S+ + +DI + GAGAY+CGEETAL+ S+EGK+G P +PP+PA GL Sbjct: 264 RLGILGTQIFDSRFDFKIDIRI--GAGAYVCGEETALMASIEGKRGTPHPRPPYPAESGL 321 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 +G PT +NNVE+ A V I+R+GA W++ G E ++GTK+F+++G + +E M + Sbjct: 322 WGYPTLINNVETYANVAPIIRKGAEWFASIGTEKSKGTKVFALAGKIRNTGLIEVPMGTS 381 Query: 262 FDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 +++E GG+ DN + AV GG S C+PA +I+DY+ L ++GS +G+ Sbjct: 382 LKQIVEAMGGGVP---DNGVVKAVQTGGPSGGCIPASAFE-SIVDYESLTQLGSMMGSGG 437 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 +IVMD +T+++ F ESCG+C PCR GT + +++ ++ +G A +++LL Sbjct: 438 MIVMDETTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHKLLTKISQGKASLADLELLE 497 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 E+ ++ ++C LG +A P+ ++ FR Sbjct: 498 ELCDMVKNTSLCGLGQSAPNPVFSTLRYFR 527 >gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] Length = 628 Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 158/408 (38%), Positives = 245/408 (60%), Gaps = 6/408 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +++ + ++RG + ++K L E +I VKASGLRGRGG GF T Sbjct: 146 QMRIALRNCGAIDPENIDEYIARGGYLAIEKCLSEMTPAQVIETVKASGLRGRGGGGFPT 205 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +D+ Y+ NADE +PG DR I+ +PH +IE IA +AIGA + Sbjct: 206 GIKWGLAAQNKADQ-KYVCCNADEGDPGAFMDRSILEGDPHAVIEAMSIAGYAIGATQGY 264 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 +YVR E+ L+ A+++ GLLG N G+ D+ + GAGA++CGEETAL+ S Sbjct: 265 VYVRAEYPIAVHRLRVAIEQAREYGLLGDNVLGTGFKFDMDIRLGAGAFVCGEETALMTS 324 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G+PR +PP+PA GL+ PT +NNVE+ A +P I+ +GA W++ G + + GTK+ Sbjct: 325 IEGKRGEPRPRPPYPAVKGLFEKPTILNNVETYANIPQIILKGADWFNSIGTKGSTGTKV 384 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++ G +N+ VE M T ++E+ GGI G A + GG S C+PA + Sbjct: 385 FALGGKINHTGLVEVPMGTTLRTIVEEIGGGIPSGRPFKAAQM-GGPSGGCVPAEYLDVP 443 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DYD L E+G+ +G+ +IVMD +T ++ F ESCG+CTPCR GT ++ + Sbjct: 444 I-DYDSLIEIGAMMGSGGLIVMDDTTCMVDIAKFFLEFTVDESCGKCTPCRIGTKRLLEL 502 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++R+ +G ++ + ++S++I+ +CALG A P+ +K FR Sbjct: 503 LDRISRGEGTMESLEEIEDLSQHIKNSALCALGQTAPNPVLSTLKFFR 550 >gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] Length = 626 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 157/393 (39%), Positives = 229/393 (58%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D ++RG ++++ K L + II VKASGLRGRGG GF TG+KW F K D Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R ++ +PH ++EG +IA +A+GA + Y+R E+ + + Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVKMFK 278 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GLLG N G+ D+ V GAGA++CGEETALL S+EGK+G PR KPPFP Sbjct: 279 KAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A +P ILR G Y G EN+ GTK+FS++G + +E Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++I CGG G + AV GG S CL + +DYD LK+ + +G Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFIDMPLDYDTLKKADAMVG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + T +++ F K ESCG+C PCREGT ++E+ G A ++ Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +SK I+ ++C LG A PI +K FR Sbjct: 517 ALEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549 >gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Clostridium thermocellum ATCC 27405] gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 597 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 159/414 (38%), Positives = 241/414 (58%), Gaps = 10/414 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +++ +K SGLRGRGG Sbjct: 110 FFAKQQRIALRNCGVINPENIDEYIAFDGYKALAKVLTEMTPEQVVDVIKRSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K +D+ Y+ NADE +PG DR ++ +PH++IE IA +AIGA Sbjct: 170 GFPTGLKWEFAMKQDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEE 175 + ++YVR E+ + L A+ + GLLG N + +DVDI GAGA++CGEE Sbjct: 229 NQGYVYVRAEYPIAVKRLGIAIQQAREYGLLGKNIFGTDFSFDVDI--RLGAGAFVCGEE 286 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ +G W++ G E Sbjct: 287 TALMTSIEGHRGEPRPRPPFPAVKGLWQKPTLLNNVETYANIPQIILKGPEWFASIGTEK 346 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+F++ G +N VE M T E+I GGI G A GG S C+PA Sbjct: 347 SKGTKVFAVGGKINNTGLVEIPMGTTLREVIYDIGGGIPNG-KKFKAAQTGGPSGGCIPA 405 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + I DYD L ++GS +G+ +I+MD T ++ F ESCG+C PCR GT Sbjct: 406 SHIDTPI-DYDSLTQLGSMMGSGGLIIMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGT 464 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 M ++ER+ +G ++ +I+ L ++KNI+ +C LG A PI ++ FR Sbjct: 465 KRMYEILERITEGKGEEGDIEKLEMLAKNIKASALCGLGQTAPNPILSTLRYFR 518 >gi|257058013|ref|YP_003135901.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] gi|256588179|gb|ACU99065.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] Length = 535 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 150/406 (36%), Positives = 248/406 (61%), Gaps = 9/406 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +S+ + +SRG + + ++L E + +I EV SGLRGRGG G+ TG+KW Sbjct: 125 VLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGGGYPTGVKW 184 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K+ + + Y++ NADE +PG DR I+ +PH ++EG IA +A+GA+ +IY+R Sbjct: 185 ATVAKMPTQQ-KYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGANHGYIYIR 243 Query: 127 GEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 E+ + L+ A+ + GL+G +S + +DI V GAGA++CGEETAL+ S+E Sbjct: 244 AEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRV--GAGAFVCGEETALMASVE 301 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G P +PP+PA GL+G PT +NNVE+ A + I+R G +WY+ G E ++GTK+F+ Sbjct: 302 GKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGNWYASIGTEKSKGTKVFA 361 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ++G V +E M T E++E+ GG+ G + + AV GG S C+P + + Sbjct: 362 LTGKVKNIGLIEVPMGTTIREIVEEIGGGVSDG-EKVKAVQTGGPSGGCIPE-YLFDTPV 419 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 +YD L+++G+ +G+ +IVMD ST +++ F + ESCG+C PCR GT + ++ Sbjct: 420 EYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQLYNLLT 479 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +LV+G A R++ L + + ++ ++C LG A P+ + FR Sbjct: 480 KLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFR 525 >gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] Length = 597 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 160/409 (39%), Positives = 243/409 (59%), Gaps = 8/409 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + ++ + + R ++ + K L E R+ +I EVK SGLRGRGG GF T Sbjct: 115 QHRIALENCGYINPDNIEEYIVRHGYEALGKALTEMTREQVIEEVKTSGLRGRGGGGFPT 174 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSF + D+ Y++ NADE +PG DR I+ +PH +IEG +I ++AIGA + Sbjct: 175 GLKWSFCARAQGDK-KYVICNADEGDPGAFMDRSILEGDPHCVIEGMMIGAYAIGADEGY 233 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLE 180 IY R E+ + L+ A+++ A GLLG N +G D IVH GAGA++CGEETAL+ Sbjct: 234 IYCRAEYPLAIQRLKTAIEKAEAYGLLGKNI-MGTDFSFIVHIKEGAGAFVCGEETALMA 292 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G PR +PPFPAN GL+ P+ +NNVE+ A +P I+ G Y+ G E ++GTK Sbjct: 293 SIEGQRGMPRPRPPFPANKGLWDKPSNINNVETWANIPYIILHGGDHYASMGTEKSKGTK 352 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G V + VE M IT E+I GGI AV GG S CL + Sbjct: 353 VFALTGKVKHTGLVEVPMGITLREIIFDIGGGILND-KKFKAVQIGGPSGGCLTEEHLDL 411 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + Y+ L E+G+ +G+ ++VMD ++ F + ESCG+CTPCREGT M+ Sbjct: 412 PV-SYESLAEVGAIMGSGGMVVMDEENCMVDVAKFFLEFTQRESCGKCTPCREGTKQMLL 470 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ +G ++D L++++ ++ ++C LG A PI ++ FR Sbjct: 471 LLNKISEGKGTMEDLDTLHDLAVMVKEMSLCGLGQTAPNPILTTLRYFR 519 >gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 624 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/421 (39%), Positives = 248/421 (58%), Gaps = 7/421 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q R+ + G + S+++ ++ G + +K L + +D II E+ S LRGRGG GF Sbjct: 142 QTRLVLDHCGHIDSTSINEYLAIGGYSAFEKALFDMTQDEIITEISESNLRGRGGGGFPA 201 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KWS + + ++ Y+V N DE +PG DR IM +PH ++EG +IA A GA + Sbjct: 202 GRKWSQVKRQNVEQ-KYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGLACGASEGY 260 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L+ A+ + GLLG N G++ ++ ++ GAGA++CGE +AL S Sbjct: 261 IYVRAEYPMAVSRLKTAIKQASECGLLGENILGRGFNFNLHINRGAGAFVCGEGSALTAS 320 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ GA+WY G EN+ GTK Sbjct: 321 IEGKRGMPRVKPPRTVEHGLFDKPTVLNNVETYANVPLIINNGAAWYKAIGPENSPGTKA 380 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G++ +E M T E+I GG+RG D AV GG S CL Sbjct: 381 FALTGNIENTGLIEVPMGTTLREVIFDIGGGMRGNAD-FKAVQIGGPSGGCLST-DDLDL 438 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D L+E G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT M+ + Sbjct: 439 PLDFDSLQEAGAMIGSGGMVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEI 498 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+V+G + +I+LL E++ I +C LG AAA+P+ IKNFR E I + R Sbjct: 499 LERIVEGKGKDGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHIRE-KR 557 Query: 422 C 422 C Sbjct: 558 C 558 >gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822] gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822] Length = 546 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 9/379 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ E+ SGLRGRGG G+ TG+KW+ + K+ + Y++ N DE +PG DR ++ +P Sbjct: 156 VVEEITKSGLRGRGGGGYPTGLKWATVAKM-PGKQKYVICNGDEGDPGAFMDRSVLESDP 214 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159 H ++EG IA++A+GA +IYVR E+ + L+ A+ + G+LGS S + V Sbjct: 215 HLVLEGMAIAAYAVGADHGYIYVRAEYPLAIKRLEKAIQQAKKYGILGSQIFESHFDFKV 274 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGA++CGEETAL+ S+EGK+G PR +PP+PA +GL+ CPT +NNVE+ A + Sbjct: 275 DIRI--GAGAFVCGEETALIHSIEGKRGTPRTRPPYPAELGLWECPTLINNVETYANIAP 332 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+R G +WY+ G E ++GTK+F+++G + +E M IT E++E+ GGI G Sbjct: 333 IIREGGNWYASIGTETSKGTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGIVDG--E 390 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AV GG S C+PA + + DY+ L ++GS +G+ ++VMD +T +++ F Sbjct: 391 VKAVQTGGPSGGCIPADLLDTPV-DYNSLGKLGSMMGSGGMVVMDENTSMVEVAKFYMEF 449 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 + ESCG+C PCR GT M ++ +LV A K +++ L + ++ ++C LG +A Sbjct: 450 CQEESCGKCVPCRAGTVQMYEILNKLVNRQATKTDLEKLEALCLVVKETSLCGLGQSAPN 509 Query: 400 PIQGLIKNFRPLIEERIDQ 418 PI ++ FR E + + Sbjct: 510 PILSTLRYFRAEYEALLQE 528 >gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] Length = 597 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 158/401 (39%), Positives = 230/401 (57%), Gaps = 6/401 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D ++RG ++ + + L+ D II EV+ SGLRG+GGAGF TG KW P Sbjct: 127 SLDDYIARGGYEGLKRALKMTPDEIITEVEKSGLRGKGGAGFPTGRKWRTAAGY-DVFPK 185 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V N DE +PG D M PH +IEG +I + AIGA +Y+R E+ R+ +Q Sbjct: 186 YIVCNGDEGDPGAFMDGSTMEGSPHAVIEGMIIGALAIGAEEGVLYIRDEYALARDHIQH 245 Query: 139 AVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+D+ YA+G+LG S LG D +D+ + G GA++CGE TAL+ S+EG+ G+PR K Sbjct: 246 AIDDAYAAGILG-ESILGTDHKLDLSIVRGGGAFVCGESTALMASIEGRVGEPRAKYIRS 304 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+ PT +NNVES+A +PTILR G Y+ G +N++GTK+F++ G V + VE Sbjct: 305 VQRGLFDNPTVLNNVESLASIPTILRDGGEKYAEIGTDNSKGTKVFAMVGKVKHTGLVEV 364 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T LI GG G A+ GG S C+P ++ +D+D L E G+ +G Sbjct: 365 PMGTTLRTLIYDI-GGGIIGDRPFKAIQTGGPSGGCIPE-ELLDLPVDFDTLVEYGAMMG 422 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + +IVMD + +++ F ESCG+CTPCREG M ++ + +G + +I+ Sbjct: 423 SGGMIVMDDRSCMVEVARYYVDFLCEESCGKCTPCREGLRQMRAILTDICEGRGKPGDIE 482 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 LL + ++ ++CALG A P+ IK FR E ID Sbjct: 483 LLERIGHTMQDASLCALGRTAPNPVLTTIKFFRDEYEAHID 523 >gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] Length = 581 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 217/369 (58%), Gaps = 17/369 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ ++N V+ +GLRG GGAGF +G+KW + K P + +NADE EPGT KDR + Sbjct: 227 REEVVNRVETAGLRGMGGAGFKSGLKWRLVRK--QPAPRLMAINADEGEPGTFKDRHHLE 284 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +PH +EG +IA++A+ A +IY+R E+ R+ L ++ +GL Sbjct: 285 LDPHRFLEGMLIAAWAVEAEACYIYLRDEYPHLRKVLLREIERVARAGL-------SPHC 337 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I++ GAGAYICGEE+A+LESLEGK+G PR KPP+P VGL+G PT ++NVE++ + Sbjct: 338 RIVLRRGAGAYICGEESAMLESLEGKRGYPRHKPPYPVEVGLFGRPTLIHNVETVYWLRD 397 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL RG W++ GR G + FS+SG V P IT ELI+++CGG+ G Sbjct: 398 ILERGPDWFARHGRRGRTGLRSFSVSGRVAEPGVKLAPAGITARELIDEYCGGMAPG-HT 456 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA ++ +D+ L G +G+AAV+V + + L F Sbjct: 457 LKAYLPGGASGGLLPA-RLADEPLDFGTLDPYGCFIGSAAVVVFSEQDSLRAVVRNLLKF 515 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ++HESCGQCTPCR GT ++++ + + LL E+S+ + +IC LG AA Sbjct: 516 FEHESCGQCTPCRVGTEKLVQLTD------PPGWDRPLLLELSETMRQASICGLGQAAPN 569 Query: 400 PIQGLIKNF 408 P+ L++ F Sbjct: 570 PLLSLLRFF 578 >gi|156741350|ref|YP_001431479.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] gi|156232678|gb|ABU57461.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] Length = 532 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 232/368 (63%), Gaps = 5/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ V SGLRGRGGAG+ TG+KW+ + K DR Y+V NADE +PG DR I+ +P Sbjct: 155 VIDVVTRSGLRGRGGAGYPTGLKWATVAKSHGDR-KYVVCNADEGDPGAFMDRSIIESDP 213 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG IA++A+GA ++YVR E+ + LQ A+ + GLLG+ G+ I Sbjct: 214 HKILEGMAIAAYAVGADQGYVYVRAEYPLAIQRLQRAIAQARRLGLLGAQIFDAGFTFRI 273 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A +P I+ Sbjct: 274 DIRVGAGAFVCGEETALMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPPII 333 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA W++ G E+++GTK+F+++G + + +E M +T +++E+ GG+ G + Sbjct: 334 RNGAEWFAAIGAEHSKGTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPEG--RVK 391 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA + + DY+ L+ +GS +G+ ++VMD +T+++ F K Sbjct: 392 AVQTGGPSGGCIPAALLDTPV-DYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEFCK 450 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ ++ + G A ++ L ++ ++ ++C LG +A P+ Sbjct: 451 DESCGKCIPCRAGTAQMLHMLNLIRSGQATAADLARLEQLCIMVKETSLCGLGQSAPNPV 510 Query: 402 QGLIKNFR 409 +K FR Sbjct: 511 LSTMKYFR 518 >gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54] gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54] Length = 634 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 232/416 (55%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKS-LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q RI +G + + + + ++K L++G D ++ E+K S LRGRGG GF Sbjct: 143 QKRILFASFGFTDPTNIEHYLVHDGYLALEKSLQEGPDMVLTEIKKSALRGRGGGGFPAA 202 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW K + P Y+V NADE +PG DR ++ +PH ++EG IA IG+ +I Sbjct: 203 RKWEAGRKA-TGHPKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGLTIGSEKGYI 261 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLES 181 YVR E+ LQ A+D+ LLG+N LG D DI + GAGA++CGE TAL +S Sbjct: 262 YVRAEYPLAIARLQNAIDQAKEKNLLGANI-LGTDFSFDIELFQGAGAFVCGESTALTQS 320 Query: 182 LEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 ++G +G P+ P P + GL+ PT +NNV++ A VP I+ G ++ G E ++GT Sbjct: 321 IQGYRGMPKASPRPRTTDEGLFDKPTLLNNVKTFAYVPKIINSGGESFAAIGTEKSKGTA 380 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G V + +E M T E++ + GG+ G A+ GG S CLPA + Sbjct: 381 VFALTGMVKHCGLIEVPMGTTLREIVFELGGGMVG-ESPFKAIQSGGPSGGCLPAHTLDT 439 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + DYD L G+ +G+ ++VMD ST ++ F + ESCGQCT C+ GT M+ Sbjct: 440 PV-DYDSLVSAGAMMGSGGLVVMDESTCMVDIARYFLDFTQKESCGQCTLCKLGTKQMLN 498 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++E +V G ++ +I+LL EV + + ++C LG +AA P+ IK FR E I Sbjct: 499 ILEDIVAGRGKEGDIELLLEVGEAVNAGSLCGLGKSAANPVLTTIKYFRDEYEAHI 554 >gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] Length = 626 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 157/419 (37%), Positives = 242/419 (57%), Gaps = 8/419 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q R+ N G + +S+ + ++ G + K L + + IINE+ + LRGRGG GF T Sbjct: 143 QTRVALNNCGHINAESIEEYLAEGGYSATTKALFDMTSEEIINEMSEAHLRGRGGGGFPT 202 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW + K ++ Y+V N DE +PG DR +M PH +IEG +IA A AH + Sbjct: 203 GKKWDQVLKQ-TESEKYIVCNGDEGDPGAFMDRSMMEGNPHGVIEGMIIAGIATKAHNGY 261 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+++ GLLG N G+D I ++ GAGA++CGE +AL S Sbjct: 262 IYVRAEYPLAVKRLRIAIEQAMEKGLLGDNILNSGFDFHIQINQGAGAFVCGEGSALTAS 321 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G PR+KPP GL+G PT +NNVE+ V I+ +G WY G ENN GTK Sbjct: 322 IEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFCNVSPIINKGVHWYKTMGTENNYGTKA 381 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR-G 300 F+++G+VN +E M T ++I GG++GG AV GG S CL + Sbjct: 382 FALTGNVNNTGLIEVPMGTTLRKIIFDIGGGVKGG--EFKAVQIGGPSGGCLCLRENHLD 439 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D LK++G+ +G+ ++VM+ +++ F ++ESCG+C PCREGT M+ Sbjct: 440 LTLDFDSLKKVGAMIGSGGLVVMNDKNCMVEMARFFMNFTQNESCGKCIPCREGTRRMLE 499 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQ 418 ++ +V+G +ID L E+++ I +C LG +AA+P++ ++ FR IE +D+ Sbjct: 500 ILNDIVEGKGTLDDIDTLEELAETISDTALCGLGKSAAFPVRSTLRYFRDEYIEHVVDK 558 >gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402 065] Length = 631 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 157/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GFSTG KWSF SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ RGA WY G E + GTK+F+++G +N VE M T E+I GGI+ G Sbjct: 367 IINRGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F E +D+ RC Sbjct: 545 PVLSTMRYFMDEYEAHVDE-KRC 566 >gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 623 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 158/421 (37%), Positives = 242/421 (57%), Gaps = 9/421 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +S ++ +++G + + K+L + + + S LRGRGG G+ G KW Sbjct: 145 VLKNCGSINAESFAEYVAKGGYQALGKVLFDMEPQEVCQSILDSNLRGRGGGGYPAGRKW 204 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + K S + Y+V N DE +PG DR IM +PH +IEG IA +A + +IYVR Sbjct: 205 QQVLKQDS-KIKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKSTSGYIYVR 263 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E L+ A+++ G+LG N G+ DI ++ GAGA++CGE +AL S+EG+ Sbjct: 264 AEYPLAVERLRIAIEDARKHGMLGENILNSGFSFDININKGAGAFVCGEGSALTASIEGE 323 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP GL+ PT +NNVE+ A VP+I+ G+ WY G G EN+ GTK F+I+ Sbjct: 324 RGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPSIIINGSEWYKGIGPENSPGTKAFAIT 383 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G+VN +E M T E+I GGI+ AV GG S CL + +D+ Sbjct: 384 GNVNNTGLIEVPMGTTLREVIFDIGGGIKDN-KKFKAVQIGGPSGGCLTEEHLE-LPLDF 441 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D LK++G+ +G+ ++VMD T +++ F ++ESCG+C PCREGT M+ ++E++ Sbjct: 442 DSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILEKI 501 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERID---QYHR 421 V G K ++DLL E++ I +C LG +AA P+ +K FR +E ID + H Sbjct: 502 VNGKGTKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVIDKKCKTHT 561 Query: 422 C 422 C Sbjct: 562 C 562 >gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] Length = 623 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 153/420 (36%), Positives = 235/420 (55%), Gaps = 8/420 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K L E + +I+EV SGLRGRGGA Sbjct: 136 FLKLQTRIVLENCGNIDAESIDEYIAIGGFSALSKALFEMTPETVIDEVDKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + ++ Y+V N DE +PG D +M +P+ +IEG IA++A+GA Sbjct: 196 GFPAGKKWKQVAGQ-PEKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176 +IYVR E+ L+ A+ + GLLG + LG D +H GAGA++CGE + Sbjct: 255 QEGYIYVRAEYPLSVARLKKAMRQAEEYGLLGDHI-LGTDFSFHLHINRGAGAFVCGEGS 313 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL S+EG +G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G E + Sbjct: 314 ALTASIEGNRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILEGADWFRTIGTEKS 373 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK FS++G + +E M T +I GG++ G V GG S CL Sbjct: 374 PGTKTFSLTGSIETTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLTEE 432 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+D +K+ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 433 HLDQP-LDFDAVKKFDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTK 491 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+V+G + +++D L E+++ + +C LG +A P+ +K FR EE I Sbjct: 492 RMLEILERIVEGKGELKDLDQLEELAEMVRSMALCGLGKSAPLPVISTLKRFREEYEEHI 551 >gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 567 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 218/372 (58%), Gaps = 16/372 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E+ + +I ++ SGLRG GGAGF +G KW + P + VN DE EPGT KDR Sbjct: 207 ERDVESVIKTMEDSGLRGLGGAGFPSGRKWRIVRG--EKGPRLMAVNIDEGEPGTFKDRV 264 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +PH +EG +IA++A+ +IY+R E+ R L+A +++ L +N + Sbjct: 265 YLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRTMLEAELEK------LKANPPIA 318 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT +N E++ Sbjct: 319 NMPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYW 378 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V IL +G W++ GR +G + +S+SG V P IT ELI++HCGG+ G Sbjct: 379 VRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAGITIQELIDEHCGGMLEG 438 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 +PGG+S LPA M +D+D L+ G +G+AAVIV+ ++A + Sbjct: 439 -QTFYGYLPGGASGGILPA-SMNAIPLDFDTLQPYGCFIGSAAVIVLSDKDTAVQAARNM 496 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 F+KHESCGQCTPCR GT ++++ K ++ LL ++S+ + +IC LG A Sbjct: 497 MDFFKHESCGQCTPCRVGTAKAAELIKK------PKWDVGLLEDLSQVMRDSSICGLGQA 550 Query: 397 AAWPIQGLIKNF 408 A PI ++K F Sbjct: 551 APNPIDCVVKYF 562 >gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] Length = 626 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 234/410 (57%), Gaps = 9/410 (2%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ +Q +SL++ + + + K I + + II E+K SGLRGRGGAGF TG KW Sbjct: 152 NVEKIQLESLNEYIGADGYQALHKAIFDLDQKEIIEEMKKSGLRGRGGAGFPTGRKWESA 211 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 KV + Y++ NADE +PG DR I+ +PH+++EG I AIGA+ FIYVR E+ Sbjct: 212 YKV-ENNQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGANQGFIYVRAEY 270 Query: 130 IRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + L+ A+ + LLG+N S +D+++ G+GA++CGE TAL+ES+EG++ Sbjct: 271 PIAVKRLRIAIQQAKEMNLLGNNIFGSDFSFDIEL--RLGSGAFVCGEGTALMESIEGRR 328 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR K A GL+ PT +NNVE+ A VP I+ +GA W++ +G E + GTK+F++ G Sbjct: 329 GMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYKGADWFTSYGTEGSPGTKVFALGG 388 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V VE M T E+I GGI+ G AV GG S C+P + +D++ Sbjct: 389 KVVNTGLVEVPMGSTLREIIFDIGGGIKDG-KKFKAVQTGGPSGGCIPE-EFLDTPVDFE 446 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L ++GS +G+ +IVMD ++ F ESCG+C PCREGT M+ ++E++ Sbjct: 447 SLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKRMLEILEKIT 506 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G + +I+ L ++ I ++C LG A P+ +K FR E I Sbjct: 507 SGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHI 556 >gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043] gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chromohalobacter salexigens DSM 3043] Length = 595 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 17/367 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ ++ + LRG GGAGF T KW+F+ + P Y +NADE EPGT KDR + P Sbjct: 234 LMQALETANLRGLGGAGFPTFKKWTFVRQEAG--PRYCAINADEGEPGTFKDRVYLERSP 291 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +EG +++++A+ A +IY+R E+ L+ A+ E GL+ + I+ Sbjct: 292 HRFLEGALVSAWAVEAEALYIYLRDEYPGLHRVLREAIAELEDEGLVVPDY-------IV 344 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 + GAGAYICGEE+A++ESLEGK G+PR +PPF A GL+ PT VNNVE++ +P I + Sbjct: 345 LRRGAGAYICGEESAMIESLEGKPGKPRHRPPFVAQRGLFDRPTLVNNVETVYWIPLIWQ 404 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 RGA ++ GR G + FS+SG V +P IT +ELIE++CGG+ G L+A Sbjct: 405 RGAEAFARQGRHGRVGLRSFSVSGRVKHPGVHLAPAGITLEELIEEYCGGMAEG-HRLVA 463 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 +PGG+S LPA + +D+D L+ G +G+AAVIV+ D+ L F+ Sbjct: 464 YLPGGASGGILPASKA-NVPLDFDTLQAYGCFIGSAAVIVLSDQDDLRAVATNLLAFFAD 522 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCGQCTPCR GT M+ ++E + + L +S+ + +IC LG AA P+ Sbjct: 523 ESCGQCTPCRVGTEKMLTLLE------GDEWDAATLTRLSQVMMDASICGLGQAAPNPVL 576 Query: 403 GLIKNFR 409 GL+K+FR Sbjct: 577 GLLKDFR 583 >gi|158340818|ref|YP_001521986.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F, putative [Acaryochloris marina MBIC11017] gi|158311059|gb|ABW32672.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F, putative [Acaryochloris marina MBIC11017] Length = 551 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 145/406 (35%), Positives = 245/406 (60%), Gaps = 10/406 (2%) Query: 8 IFTNLYGLQGKSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + K + D M+ +G+ + + +I+++ SGLRGRGG G+ TG+KW Sbjct: 134 VLENSGHIDPKEIKDYMAQKGYLALTQALYDMTPSDVIDQITQSGLRGRGGGGYPTGLKW 193 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + K+ + Y++ N DE +PG DR ++ +PH ++EG IA++A+GA+ +IY+R Sbjct: 194 STVAKMPPGQ-KYVICNGDEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGANQGYIYIR 252 Query: 127 GEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 GE+ L+ A+ + GLLGS S + +DI + GAGA++CGEETAL+ S+E Sbjct: 253 GEYPLAINHLETALRQARKQGLLGSQIFESPFDFRIDIRI--GAGAFVCGEETALMASIE 310 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G P +PP+PA GL+GCPT +NNVE+ A + I+R GA W+ G G + ++GTK+FS Sbjct: 311 GKRGLPHPRPPYPAESGLWGCPTLINNVETFANIAPIIRNGAEWFVGIGTDKSKGTKVFS 370 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ++G + +E M + +++E+ GG+ G + AV GG S C+PA + Sbjct: 371 LAGKIQNTGLIEVPMGTSLRQIVEQMGGGVLDG--SAKAVQTGGPSGGCIPAHAFDTPV- 427 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ L +GS +G+ +IVMD++T+++ F ESCG+C PCR GT + +++ Sbjct: 428 DYESLTRLGSIMGSGGMIVMDQATNMVDVARFFMEFCMEESCGKCVPCRAGTVQLYQLLT 487 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ G A+K +++ L ++ + ++ ++C LG +A PI ++ F+ Sbjct: 488 KICDGKARKEDLESLNQLCEMVKDTSLCGLGKSAPNPILSTLRFFK 533 >gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii DSM 519] gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii] Length = 625 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 158/387 (40%), Positives = 236/387 (60%), Gaps = 8/387 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I EK +I+E+K SGLRGRGG GFSTG+KW F K SD Y+V NADE +PG D Sbjct: 175 ITEKTPQDVIDEIKLSGLRGRGGGGFSTGLKWEFTKKPVSDI-KYIVCNADEGDPGAFMD 233 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R I+ +PH++IE +A +++GA F+Y+R E+ + L+ A++E GLLG N Sbjct: 234 RSILEGDPHSIIEAMAVAGYSVGASKGFVYIRAEYPLAIKRLRHAINEAREHGLLGDNIM 293 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + DI + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+G PT VNNVE+ Sbjct: 294 GTSFSFDIEIKYGAGAFVCGEETALIHSIEGQRGEPTTKPPFPAESGLWGKPTCVNNVET 353 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 +A VP IL GASW++ G E ++GTK+F+++G +N VE M IT E+I + GGI Sbjct: 354 LANVPAILLEGASWFNAIGSETSKGTKVFALAGKINNVGLVEVPMGITLREIIYEIGGGI 413 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 + G + AV GG S C+ Q+ I DY+ L +GS +G+ +IVMD ++ Sbjct: 414 KDGKE-FKAVQTGGPSGGCITKDQLDVKI-DYESLGAIGSMMGSGGMIVMDEDNCMVDIA 471 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F ESCG+CTPCR G + ++ ++ +G ++D + E+++ I+ ++C L Sbjct: 472 KFYLEFTVEESCGKCTPCRVGNKRLHEMLTKISEGKGTMEDLDAMKELAQTIKDTSLCGL 531 Query: 394 GDAAAWPIQGLIKNF----RPLIEERI 416 G A P+ + F R ++++I Sbjct: 532 GQTAPNPVLSTLNFFGDEYRAHVQDKI 558 >gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] Length = 581 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 161/400 (40%), Positives = 221/400 (55%), Gaps = 16/400 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SL D + G + + L G+ +I EV +GL GRGGA F TG KW+ + P Sbjct: 191 SSLDDYRATGGYAALRNALRMGQAAVIREVTDAGLLGRGGAAFPTGRKWAATAAQPAG-P 249 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 HYLV NADESEPGT KDR ++ +P L+E IA+FAIGA ++Y+RGE+ R L+ Sbjct: 250 HYLVCNADESEPGTFKDRVLLEGDPFALVEAMTIAAFAIGARQGYVYLRGEYPRALRLLR 309 Query: 138 AAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+D G LG + G+ DI + GAGAYICGEETA+ S+EG +G+PR KPPF Sbjct: 310 NALDVGRERGFLGVDVMGHAGFSFDIEIRRGAGAYICGEETAIFNSIEGFRGEPRTKPPF 369 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P GL+G PT VNNVE++ VP IL GA+ Y G E + G KLF +SG+V P E Sbjct: 370 PVEQGLFGKPTVVNNVETLVNVPLILTEGAAAYRSIGTEASAGPKLFCLSGNVERPGVYE 429 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEM 311 T EL+ GG+ G +L AV+ GG++ G +R +D ++ + Sbjct: 430 VPFGATLRELL-ALAGGVPEG-RSLRAVLLGGAA-----GGFVRPDELDLPLTFEDARAA 482 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 + LG+ V+V+D D+ + R++ F++ ESCGQC PCR GT + R++ A Sbjct: 483 KTTLGSGVVLVLDDLADLGGFLLRIAEFFRDESCGQCVPCRIGTVRQEEAIRRVLA--AG 540 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411 E LL EV + +IC LG A I+ I L Sbjct: 541 SEEQPLLREVGGVMRDSSICGLGQTAWNAIESAIDRLGAL 580 >gi|57234506|ref|YP_181467.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] gi|57224954|gb|AAW40011.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] Length = 623 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 164/416 (39%), Positives = 244/416 (58%), Gaps = 11/416 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + S+ D ++ G + ++ K + + + I+ EV SGLRGRGG GF TG KW Sbjct: 144 VFGNNGNIDPTSIDDYLAVGGYKSLAKAISGLKPEEIVEEVIKSGLRGRGGGGFPTGWKW 203 Query: 67 SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 K C D Y++ N DE +PG DR +M PH++IEG +I ++AIG+H A+I Sbjct: 204 ----KSCRDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYI 259 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + A+ + GLLG N G+D+ I ++ G GA++CGE TAL+ SL Sbjct: 260 YIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFDLKIHINRGGGAFVCGESTALMASL 319 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK G+PR K + GL+ PTT+NNVE+ A +P I+ +GA W++ G E ++GTK+F Sbjct: 320 EGKVGEPRAKYVHTSEKGLHDKPTTLNNVETWANIPLIIEKGADWFNKIGTEGSKGTKIF 379 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+ G VN +E M IT E++ GGI G A+ GG S CLP M Sbjct: 380 SLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLP 437 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG M +++ Sbjct: 438 VDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQIL 497 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ER+ KG ++ +I+LL ++S+ I+ ++CALG +A P+ IK FR E I Q Sbjct: 498 ERITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVLSTIKYFRDEYEAHIRQ 553 >gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 3502] gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] Length = 631 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 156/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GFSTG KWSF SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ RGA WY G E + GTK+F+++G +N VE M T E+I GGI+ G Sbjct: 367 IINRGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F + +D+ RC Sbjct: 545 PVLSTMRYFMDEYKAHVDE-KRC 566 >gi|169830327|ref|YP_001716309.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169637171|gb|ACA58677.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 656 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 147/394 (37%), Positives = 223/394 (56%), Gaps = 5/394 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ D + + +I+ V SGLRGRGGAGF TG KW+ + P Y+V N DE Sbjct: 170 GYQALADVLTRYTPEEVIDAVTRSGLRGRGGAGFPTGRKWA-AARRAEGEPKYVVCNGDE 228 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR ++ +PH+++EG IA++A+GA +IYVR E+ E L+ A+ + Sbjct: 229 GDPGAFMDRSVLEGDPHSVLEGMTIAAYAVGAGHGYIYVRAEYPLAVERLKIAIAQARQH 288 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP-PFPANVGLYGC 204 +LG + G++ DI + GAGA++CGE TAL+ SLEG +G P+ P P G+ G Sbjct: 289 RVLGQDIMGTGFNFDIEIFRGAGAFVCGESTALVRSLEGFRGMPKAMPRPRTTEEGIGGK 348 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNV+S A VP I+ RG W++ G E ++GT +F+++G +E M IT E Sbjct: 349 PTLLNNVKSFAYVPQIITRGPEWFASMGTETSKGTAVFALTGKAKNTGLIEVPMGITLRE 408 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 +I GG G + AV GG S CLP ++ +D+D L GS +G+ ++VMD Sbjct: 409 IIFNIGGGTSTGQE-FKAVQTGGPSGGCLPK-ELLDMPVDFDSLTSAGSMMGSGGMVVMD 466 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 + T ++ F +ESCGQCTPCR GT M++++E + +G + ++ LL ++ K Sbjct: 467 QDTCMVDVARYFLEFTVNESCGQCTPCRVGTYQMLKILEDITQGRGKPTDLSLLEDIGKA 526 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 I +IC LG A P+ ++ FR E I + Sbjct: 527 IIAGSICGLGQTAPNPVLSTLRYFRSEYEAHIGE 560 >gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 634 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 160/420 (38%), Positives = 241/420 (57%), Gaps = 11/420 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ ++ + + ++RG + K ILE + + SGLRGRGG GF TG Sbjct: 147 QKRVVLANCRVEPSCVREYIARGGYFGARKAILEMKPEEVCQTAIDSGLRGRGGGGFPTG 206 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F +D+ Y++ N DE +PG DR +M PH++IEG +IA+ AIGA ++ Sbjct: 207 LKWKFTLASQNDK-KYVICNGDEGDPGAFMDRSVMEGNPHSVIEGMMIAARAIGADEGYV 265 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLES 181 YVR E+ E ++AAV + +GLLG + G D + V GAGA++CGEETAL+ S Sbjct: 266 YVRAEYPLAVERMRAAVKDAEEAGLLGDHL-FGSDFSFKVTVMEGAGAFVCGEETALIAS 324 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR KPPFPA GL+G PT +NNVE++A VP I G Y G E + GTK Sbjct: 325 IEGKRGMPRPKPPFPAQSGLWGKPTVINNVETLASVPGIFLNGPEQYKAVGTEKSPGTKT 384 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-----WDNLLAVIPGGSSVPCLPAG 296 F+++GHV +E T E+I GG+ ++ AV GG S CL Sbjct: 385 FALTGHVANTGLIEVPFGTTLREIIYNIGGGVTNNKGEVTTEDFKAVQIGGPSGGCLTP- 443 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 M +D+D LK G+ +G+ ++VM++ T I+K F ++ESCG+C PCREGT Sbjct: 444 DMLDLPLDFDSLKSAGAMVGSGGLVVMNKETCIVKIARFFMQFTQNESCGKCVPCREGTK 503 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ +++ +++G A ++ ++LL E +K ++ ++CALG A P+ ++ FR E + Sbjct: 504 QMLAMLDDIIEGRADRKTLELLEETAKAVQLGSLCALGKTAPNPVLSTLRFFREEYEAHV 563 >gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] Length = 597 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/396 (38%), Positives = 232/396 (58%), Gaps = 5/396 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L +++ + ++R ++ + ++L + +++ VK SGLRGRGG GF TG+KW K Sbjct: 126 LDPENVQEYIARDGYEALGRVLSTMKPADVVDTVKKSGLRGRGGGGFPTGLKWEIASKYG 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +D+ Y++ NADE +PG DR I+ +PH+++E I +AIGA +Y+R E+ Sbjct: 186 ADQ-KYVICNADEGDPGAFMDRSILEGDPHSVVEAMAICGYAIGASKGMVYIRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E LQ A+ GLLG + G+D DI + +GAGA++CGEETAL++SLEG +G+P K Sbjct: 245 ERLQKAIVAAREIGLLGKDILGTGFDFDIELRYGAGAFVCGEETALIQSLEGNRGEPTSK 304 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA G +G P+ VNNVE+ A VP I+ +GA W++ G E ++GTK+F+++G VN Sbjct: 305 PPFPAEKGFWGKPSNVNNVETFANVPPIILKGADWFASIGTEKSKGTKVFALAGKVNNVG 364 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE M T E+I GGIR G AV GG S CL + I D+D L G Sbjct: 365 LVEVPMGTTLREVIYDIGGGIRDG-KAFKAVQTGGPSGGCLTQKHLDTPI-DFDNLIAAG 422 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ +IVMD ++ F ESCG+CTPCR G M ++E++ +G + Sbjct: 423 SMMGSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNKRMHEILEKITQGKGTE 482 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ L E++ I+ +C LG A P+ + NF Sbjct: 483 KDLARLRELALVIKDTALCGLGQTAPNPVLSTLDNF 518 >gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 632 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 156/403 (38%), Positives = 236/403 (58%), Gaps = 7/403 (1%) Query: 18 KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ D M+RG + ++ K+L R II ++KA+GLRGRGG GF TG+KW D Sbjct: 164 ESIEDYMARGGYTSLAKVLSGMDRKEIIEQIKAAGLRGRGGGGFPTGLKWEAAYNSKGDI 223 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V NADE +PG +R ++ +PH+++EG +IA++ IGA + Y+R E+ E Sbjct: 224 -KYVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTIGAQKGYAYIRAEYPIAVEMF 282 Query: 137 QAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+++ GLLG N LG D ++ V GAGA++CGEETALL S+EGK+G PR +PP Sbjct: 283 NKAIEDAKEYGLLGENI-LGTDFSFELYVKEGAGAFVCGEETALLASIEGKRGVPRPRPP 341 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GL+G PT +NNVES A VP I+R G Y G E + GTK+FS++G + + Sbjct: 342 FPAQSGLWGKPTLINNVESYANVPKIIRDGVENYRKRGVEKSPGTKMFSVTGPLKLTGII 401 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E T +++ CGG G + A+ GG S CLP ++ +DYD LK +G+ Sbjct: 402 EIQFGTTLRYILDNICGGTSNG-QKIKAIQIGGPSGACLPE-ELFDLPLDYDTLKSVGAM 459 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ ++ + +++ F K ESCG+C PCREGT ++E+ +G A + Sbjct: 460 VGSGGIVAITEDRCMVEVARFFLDFTKRESCGKCVPCREGTTQAYNILEKFTQGKATYED 519 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ L ++S+ I+ ++C LG A PI +K F+ E I+ Sbjct: 520 LETLEQLSEIIKTASLCGLGKTAPNPIISTLKYFKNEYIEHIE 562 >gi|189219241|ref|YP_001939882.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum infernorum V4] gi|161075751|gb|ABX56623.1| formate dehydrogenase beta subunit [Methylacidiphilum infernorum V4] gi|189186099|gb|ACD83284.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum infernorum V4] Length = 522 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 233/411 (56%), Gaps = 9/411 (2%) Query: 2 LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q R IF + SL + G + + K +E G+ +I+EV SGLRGRGGA F Sbjct: 99 LKNQKRLIFERIGRNDPLSLDSYVECGGFIGLRKAIEWGQSKVIDEVYKSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S + ++V NADE + GT DR +M +P LIEG +IA FA+GA Sbjct: 159 PTGIKWKTTWQATSSQ-KFIVCNADEGDSGTFSDRMVMEGDPFLLIEGMMIAGFAVGADK 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177 +IY+R E+ E L A+ C ++GLLG S +D+++ + GAGAY+CGEETA Sbjct: 218 GYIYLRSEYPLAYEILNEAIFICKSAGLLGKRIFGSSFSFDLEVFL--GAGAYVCGEETA 275 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEGK+G R +PP PA GL+G PT +NNV +++ VP IL GA Y+ G ++ Sbjct: 276 LLDSLEGKRGMVRPRPPLPAVKGLWGKPTVINNVITLSSVPWILSHGAEAYASLGVNRSK 335 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT +SG++ YP VE I+ ELI GG R G L A+ GG P LP Sbjct: 336 GTLPVQLSGNLQYPGLVEIPFGISLKELIYGFGGGTRSG-RPLKAIQIGGPLGPYLP-DS 393 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++ +G ++ D S ++ F ESCG+CTPCR G+ Sbjct: 394 LLDIPLDYEELSKIKGIVGHGGIVAFDDSANLAHMAHYAMEFCAEESCGKCTPCRIGSTR 453 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 M ++E+++ G +RE++LL+++ + ++C LG +P+ ++ F Sbjct: 454 GMELIEKIIMGKGSRRELELLFDLCDTMLNASLCGLGGMTPFPVLSALRYF 504 >gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] Length = 624 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 221/366 (60%), Gaps = 8/366 (2%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCS--DRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 +K S LRGRGG G+ G KW +V S D Y+V N DE +PG DR +M +PH+ Sbjct: 186 IKLSNLRGRGGGGYPAGSKWE---QVLSRPDEIKYVVCNGDEGDPGAFMDRSVMEGDPHS 242 Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIV 163 ++EG +IA FA A +IYVR E+ E L A++ GLLG N G+ DI V Sbjct: 243 VLEGMLIAGFATKATQGYIYVRAEYPVAVERLNKAIEAARGVGLLGENILGSGFSFDIRV 302 Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223 + GAGA++CGE +AL S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I++ Sbjct: 303 NRGAGAFVCGEGSALTASIEGKRGMPRVKPPRTTEHGLWNRPTVLNNVETFANVPRIVQN 362 Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283 G W+ G G EN+ GTK+F+ISG+VN +E M T E+I GGIRGG AV Sbjct: 363 GGDWFRGIGPENSPGTKVFAISGNVNNTGLIEVPMGTTLREVIFDIGGGIRGG-KAFKAV 421 Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 GG S CL + + +D+D LK++G+ +G+ ++VMD T +++ F ++E Sbjct: 422 QIGGPSGGCLTSEHLD-LPLDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNE 480 Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403 SCG+C PCREGT M+ ++ R+V+G + ++D+L E++ I +C LG +AA P+ Sbjct: 481 SCGKCVPCREGTRRMLEILTRIVEGKGEMEDLDMLEELADTISNTALCGLGKSAANPVVS 540 Query: 404 LIKNFR 409 +K FR Sbjct: 541 TLKYFR 546 >gi|325291004|ref|YP_004267185.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271] gi|324966405|gb|ADY57184.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271] Length = 427 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/405 (37%), Positives = 230/405 (56%), Gaps = 6/405 (1%) Query: 7 RIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 +I ++ +G ++ S+ + ++ G ++ + K + + I E+K + L GRGGA + TG+K Sbjct: 5 KILSSRFGKIKPDSVEEYVANGGYEGLKKAITQQHLDTIEEIKKANLFGRGGAAYPTGIK 64 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W + + Y+V NADE EPGT KDR+IM +P LIEG I ++ G+ FIY Sbjct: 65 WEQAYAIPGTK--YIVCNADEGEPGTIKDREIMSRDPLMLIEGMTIGAYLFGSSEGFIYC 122 Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE+ + ++ L++A+ A+G LG N G + DI V GAGAY+CGE TAL ES+EG Sbjct: 123 RGEYGKIQKLLRSAIANAKAAGYLGDNILGTGLNFDIKVVSGAGAYVCGENTALAESIEG 182 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K G+PR KPP+ N GL PT +NNVE+ A +P I++ G + +G E + GTKL + Sbjct: 183 KTGRPRRKPPYLKNAGLNLKPTVLNNVETYACIPYIVKEGGEKFLSYGTEFSGGTKLMCL 242 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 G V E T ELI+ +CGG L V GGSS C P + I Sbjct: 243 IGDVKNRGVYEVPFGTTVRELID-NCGGGMADGKKLKFVHLGGSSGSCFPESMLDTKIC- 300 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 Y+ L++ G LG+ V+V+ +++ + + F++ ESCG+CTPCREG M+ ++E+ Sbjct: 301 YNDLRKAGISLGSGVVLVVSEDQSVVEYLKAVMEFFEEESCGKCTPCREGNQRMVEILEK 360 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +G +I L +++ + + C LG +A P LIK+F Sbjct: 361 LTEGKGTAEDIKRLKHLAQIMRDTSFCGLGQSAPVPALTLIKHFE 405 >gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8] Length = 626 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 156/393 (39%), Positives = 228/393 (58%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D ++R ++++ K L + II VKASGLRGRGG GF TG+KW F K D Sbjct: 160 SIEDYIARSGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R ++ +PH ++EG +IA +A+GA + Y+R E+ + + Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVKMFK 278 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GLLG N G+ D+ V GAGA++CGEETALL S+EGK+G PR KPPFP Sbjct: 279 KAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A +P ILR G Y G EN+ GTK+FS++G + +E Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++I CGG G + AV GG S CL + +DYD LK+ + +G Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFIDMPLDYDTLKKADAMVG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + T +++ F K ESCG+C PCREGT ++E+ G A ++ Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +SK I+ ++C LG A PI +K FR Sbjct: 517 TLEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549 >gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 616 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 154/403 (38%), Positives = 227/403 (56%), Gaps = 9/403 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D ++ G + + + E G +I+EVK S L GRGGA F G+KW K + P Sbjct: 218 ESIDDYLATGGYAGLRRAFEMGPGKVISEVKDSRLMGRGGAAFPAGIKWESTAKQPAT-P 276 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV NADESEPGT KDR I+ +P LIE IA +AI A +IY+RGE+ R L Sbjct: 277 RYLVCNADESEPGTFKDRAILEGDPFALIESMTIAGYAISAERGYIYLRGEYPRAYRMLS 336 Query: 138 AAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ G LG N G+ ++ + GAGAYICGEETA+ S+EG +G+PR KPPFP Sbjct: 337 NAIARARGRGFLGDNVMGTGWSFELEIRRGAGAYICGEETAIFNSIEGYRGEPRSKPPFP 396 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+ PT VNNVE++ VP I++ G + Y+ G E + G KLF +SG++ P E Sbjct: 397 FEAGLFNKPTVVNNVETLCNVPLIMQMGGAEYAKIGTEGSTGPKLFCVSGNLVRPGVYEV 456 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++I K GG+ G L AV+ GG++ + A ++ + ++G + + LG Sbjct: 457 PFGATLGDVI-KLAGGVPQG-RKLQAVLLGGAAGVFVRADELH-IPLTFEGARANNATLG 513 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT----GWMMRVMERLVKGIAQK 372 + V+ D + D+ + R++ F++ ESCGQC PCR GT ++R+M A++ Sbjct: 514 SGVVLAFDDTVDLPAILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIMRNGRDTAAKE 573 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R + LL +V ++ +IC LG AA ++ I L + R Sbjct: 574 RNVGLLRDVGLVMKDSSICGLGQAAWNAVESAIDRLGVLEKSR 616 >gi|220909416|ref|YP_002484727.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425] gi|219866027|gb|ACL46366.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425] Length = 543 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 146/391 (37%), Positives = 238/391 (60%), Gaps = 6/391 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + ++ G + ++ K+L E ++ E+ SGLRGRGG G+ TG+KW+ + K+ D+ Sbjct: 132 IEEYIAVGGYQSLHKVLYEMTPAEVVTEITRSGLRGRGGGGYPTGLKWATVAKMPGDQ-K 190 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ N DE +PG DR ++ +PH ++EG IA +A+GA+ FIYVR E+ + LQ Sbjct: 191 YVICNGDEGDPGAFMDRSVLESDPHLVLEGMAIAGYAMGANHGFIYVRAEYPLAIQRLQK 250 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ + GLLGS +D I + GAGA++CGEETAL+ S+EG +G PR +PP+PA Sbjct: 251 AIQQAKKYGLLGSQIFDSHFDFKIEIRIGAGAFVCGEETALIASIEGGRGNPRPRPPYPA 310 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+ CPT +NNVE+ A + I+R GA WY+ G E ++GTK+F+++G + +E Sbjct: 311 QFGLWHCPTLINNVETFANIAPIVREGADWYASIGTEKSKGTKIFALTGKIRNNGLIEVP 370 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M I+ +++E+ GG+ G + AV GG S C+PA + + DYD L +GS +G+ Sbjct: 371 MGISLRQIVEEMGGGVPEG--QVKAVQTGGPSGGCIPADLLDTPV-DYDSLTALGSMMGS 427 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++VMD ST++++ F + ESCG+C PCR GT + ++ +L+ A ++D Sbjct: 428 GGMVVMDESTNMVEVAHFYMEFCRGESCGKCIPCRAGTVQLYGLLTKLLHKQATPADLDK 487 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L E+ ++ ++C LG +A P+ ++ F Sbjct: 488 LKELCAMVKETSLCGLGMSAPNPVLSTLRYF 518 >gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp. PCC 7120] gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp. PCC 7120] Length = 544 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 224/368 (60%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ V SGLRGRGGAG+ TG+KW+ + K +R +++ NADE +PG DR ++ +P Sbjct: 162 VVDSVSRSGLRGRGGAGYPTGLKWATVAKAKGER-KFVICNADEGDPGAFMDRSVLESDP 220 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG IA++A+GA +IYVR E+ + L A+ + GLLGSN + +D I Sbjct: 221 HRVLEGMAIAAYAVGASQGYIYVRAEYPIAIKRLHTAIHQAQRLGLLGSNIFESPFDFKI 280 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGAY+CGEETAL+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+ Sbjct: 281 DIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 340 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R+GA W++ G ++GTK+F+++G + +E M + +++ + GGI G Sbjct: 341 RKGADWFASIGTAKSKGTKVFALAGKIRNTGLIEVPMGTSLRQIVAEMGGGIPDG-GVAK 399 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA + DY+ L +GS +G+ +IVMD +T+++ F Sbjct: 400 AVQTGGPSGGCIPASAFDTPV-DYESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCM 458 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT + ++ ++ +G A +++LL E+ ++ ++C LG +A P+ Sbjct: 459 DESCGKCIPCRVGTVQLHGLLSKIREGKASLADLELLEELCDMVKNTSLCGLGQSAPNPV 518 Query: 402 QGLIKNFR 409 + FR Sbjct: 519 FSTLHYFR 526 >gi|119475815|ref|ZP_01616167.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2143] gi|119450442|gb|EAW31676.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2143] Length = 522 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 230/410 (56%), Gaps = 5/410 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L DQ R+ F + + S+ + G + + L K I+ ++ SGLRGRGGA F Sbjct: 103 LRDQQRLTFARVGIIDPLSIEHFLQHGGFQGLKHALTKKPAEIVVDITDSGLRGRGGAAF 162 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + SD+ Y+V NADE + GT DR IM +P +LIEG +IA A+GA Sbjct: 163 PTGIKWQTVLLTESDQ-KYIVCNADEGDSGTFADRMIMESDPFSLIEGMIIAGLAVGATR 221 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++ L+ A+ LG G++ + V GAGAYICGEETALL Sbjct: 222 GYIYLREEYRLAQQVLEQAIHVAEEHHYLGEQVHGSGHEFRLEVRMGAGAYICGEETALL 281 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGK+G R KPP PA GL+G PT VNNV S+A VP IL RG+ +Y +G +RGT Sbjct: 282 DSLEGKRGMVRTKPPVPAVAGLFGKPTVVNNVLSLATVPVILARGSQFYKDYGLGRSRGT 341 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V + VE + I+ +L+ GG R G + A+ GG LP Q Sbjct: 342 IPLQLAGNVRHAGLVEVAFGISLRKLVTYFGGGTRTG-KPIKAIQVGGPLGAYLPTAQWD 400 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++G+ LG V+V D + D+ + F ESCG+CTPCR G+ + Sbjct: 401 TP-LDYEAFTDIGAILGHGGVVVFDDTVDMAEQAQFAMEFCAIESCGKCTPCRIGSTRGV 459 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V+E++ +G +++ LL ++ + +E ++CA+G +P+ NFR Sbjct: 460 EVLEKIRQGTQREKNSQLLIDLCETMELGSLCAMGGMTPFPVLSAFNNFR 509 >gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] Length = 595 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 163/402 (40%), Positives = 235/402 (58%), Gaps = 7/402 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + D ++ G ++ + K+L E + +I EVK SGLRGRGG GF TG+KW F D Sbjct: 129 EDIDDYIAHGGYEAIKKVLKEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWGFCRASKGDL 188 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ NADE +PG DR I+ PH +IEG +IA++AIG +IY R E+ + + Sbjct: 189 -KYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGCREGYIYCRAEYPLAIKRV 247 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ G LG N LG D + +H GAGA++CGEETAL+ S+EG++G PR +PP Sbjct: 248 KKALRIAEERGFLGKNI-LGTDFEFHLHLKEGAGAFVCGEETALIASIEGERGMPRSRPP 306 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GL+G PT VNNVE+ A +P I+ GA +Y+ G E ++GTK+F++SG V V Sbjct: 307 FPAVRGLWGKPTNVNNVETFANLPLIILDGADFYASMGTEKSKGTKIFALSGKVKSTGLV 366 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M IT +LI GGI AV GG S CLP + I DYD L G+ Sbjct: 367 EVPMGITVRQLIFDVGGGIPKKR-KFKAVQLGGPSGGCLPESLLDTPI-DYDSLIAAGAM 424 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ V+VMD + ++ F + ESCG+C PCR GT M+ ++ R+ G ++ + Sbjct: 425 MGSGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKTMLDILNRITSGEGREGD 484 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 I+ L +++++I+ ++C LG A P+ IK FR E I Sbjct: 485 IENLLDLAQDIKTASLCGLGQTAPNPVITTIKYFRDEYEAHI 526 >gi|126656036|ref|ZP_01727420.1| hydrogenase subunit [Cyanothece sp. CCY0110] gi|126622316|gb|EAZ93022.1| hydrogenase subunit [Cyanothece sp. CCY0110] Length = 535 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 251/409 (61%), Gaps = 9/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 Q + N + +S+ D +SRG + + +L E + + EV SGLRGRGG G+ TG Sbjct: 122 QPIVLENSGKIDPESIDDYISRGGYQQLHHVLLEMTPNDVTQEVTKSGLRGRGGGGYPTG 181 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW+ + K+ S + Y++ NADE +PG DR ++ +PH ++EG IA++A+GA+ +I Sbjct: 182 VKWATVAKM-SGQQKYVICNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGANHGYI 240 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+R E+ + L+ A+ + GL+GS +S + +DI V GAGA++CGEETAL+ Sbjct: 241 YIRAEYPLAIKRLEKAIQQAKRYGLMGSQIFDSPFDFKIDIRV--GAGAFVCGEETALIA 298 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G PR +PP+PA GL+G PT +NNVE+ A + I+R G WY+ G EN++GTK Sbjct: 299 SVEGKRGTPRPRPPYPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSKGTK 358 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G V +E M + ++IE+ GG+ + AV GG S C+PA + Sbjct: 359 VFALTGKVENNGLIEVPMGTSIRKIIEEIGGGVL-DQGTVKAVQTGGPSGGCIPA-HLLD 416 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++YD L+++G+ +G+ +IVMD+ T +++ F + ESCG+C PCR GT + Sbjct: 417 TPVEYDSLQKLGTIMGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQLYD 476 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ +LV+ A ++++D L + + ++ ++C LG A P+ ++ F+ Sbjct: 477 LLTKLVERKATQQDLDKLEALCQMVKDTSLCGLGMTAPNPVISTLQYFQ 525 >gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] Length = 596 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 163/421 (38%), Positives = 248/421 (58%), Gaps = 7/421 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + + + ++++ + + K+L E + +I EVK SGLRGRGG GF T Sbjct: 114 QRRIALRNCGVINPEDIREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPT 173 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F K + P Y+V NADE +PG DR I+ +PH+++E IA +AIGA+ + Sbjct: 174 GVKWEFAYKQ-KETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGY 232 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+ + GLLG + G+D DI + GAGA++CGEETALL S Sbjct: 233 IYVRAEYPLAVKRLKIAIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNS 292 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 + GK+G+PR +PPFPA G++G PT +NNVE+ A +P I+ G W++ G E ++GTK+ Sbjct: 293 IMGKRGEPRPRPPFPAVKGVWGKPTIINNVETFANIPPIILNGGEWFASIGTEKSKGTKV 352 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G VN +E M T E+I + GG G AV GG S C+PA ++ Sbjct: 353 FALTGKVNNTGLIEVPMGTTLREIIYEI-GGGIPGGKKFKAVQIGGPSGGCIPA-ELLDT 410 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DYD L G+ +G+ ++VMD T ++ F ESCG+C PCR GT M+ + Sbjct: 411 PIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLEL 470 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++++ G ++ +I+ L E++K I+ +C LG A P+ ++ FR E I + R Sbjct: 471 LDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIKE-KR 529 Query: 422 C 422 C Sbjct: 530 C 530 >gi|301058595|ref|ZP_07199600.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium NaphS2] gi|300447327|gb|EFK11087.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium NaphS2] Length = 473 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 152/368 (41%), Positives = 210/368 (57%), Gaps = 8/368 (2%) Query: 54 GRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 G AGF+TG+KWSFMPK + Y+V NADE EPG KDR +M PH LIEG +I Sbjct: 95 GHVSAGFTTGIKWSFMPKGEHAASQAYVVANADEMEPGVFKDRVLMEGNPHQLIEGMLIT 154 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD--VDIIVHHGAGAY 170 + AIGA+ +I++R + + ++ A++E + +G LG + LG D VDI +H AG Y Sbjct: 155 AHAIGANTGYIFLRWAYKKAARCIEKAINEAHEAGYLGEHI-LGTDFGVDIFLHTSAGRY 213 Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230 ICGE TALL SLEG++ PR KPP A VGL+G PT VNNVE+++ VP IL+ GA WY Sbjct: 214 ICGEATALLNSLEGRRANPRAKPPHTAAVGLWGRPTDVNNVETLSNVPHILKNGADWYKD 273 Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 + GTK++ +SG V P E M T E+IE+H GG+ G+ L +PGG+S Sbjct: 274 LSLTDEGGTKIYGVSGRVKGPGWWELPMGTTAREIIEEHAGGMADGY-RLRGFLPGGAST 332 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 L A + MD + +GS +G +I++D T + + + F+ ESCG CTP Sbjct: 333 EFLLAEHLD-VPMDVKSVSALGSRMGCGTMIILDDKTCPVGMVNNVMHFFARESCGWCTP 391 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG--RTICALGDAAAWPIQGLIKNF 408 CREG W RV+ + G +++ L ++ I G T CAL A P+Q + F Sbjct: 392 CREGLPWTSRVLSAIEAGEGHPEDMERLRSHARWIGGPDSTFCALAPGAMEPLQSALTYF 451 Query: 409 RPLIEERI 416 E I Sbjct: 452 EDDFREHI 459 >gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 626 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 151/393 (38%), Positives = 232/393 (59%), Gaps = 5/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D M+RG + ++ K+L + + D II +K +GLRGRGG GF TG+KW SD Sbjct: 160 SIEDYMARGGYSSLIKVLSQMQADEIIEMIKNAGLRGRGGGGFPTGLKWEAAKNSKSDV- 218 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V N DE +PG +R ++ +PH ++EG +IA + IGA A+ Y+R E+ + Q Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYTIGAQKAYAYIRAEYPIAIQMFQ 278 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+D+ GLLG N + G+ D+ + GAGA++CGEETALL S+EGK+G PR +PPFP Sbjct: 279 KAIDDAKKLGLLGENILQTGFSFDVEIKEGAGAFVCGEETALLASIEGKRGMPRPRPPFP 338 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNVE+ A + I+R G Y G EN+ GTK+FS++G + +E Sbjct: 339 AQSGLWGYPTLINNVETYANISRIIRDGVEKYRLLGTENSPGTKMFSVTGPLKVTGIIEV 398 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++I + CGG+ G + AV GG S CL + + +DYD LK + +G Sbjct: 399 EFGTTLRKIIYEICGGLLSG-EEFKAVQIGGPSGACL-SKEFLDMPLDYDTLKSADAMVG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++V+ + T +++ F K ESCG+C PCREGT ++E+ + A K +++ Sbjct: 457 SGGIVVITKRTCMVEVARFFLDFTKRESCGKCIPCREGTMQAYNILEKFTQAKATKEDLE 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++ I+ ++C LG A PI +K F+ Sbjct: 517 NLEFLANLIKKTSLCGLGKTAPNPILSTLKLFK 549 >gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] Length = 594 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 157/417 (37%), Positives = 244/417 (58%), Gaps = 6/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + ++ D ++ + + K+L + + +I+EV SGLRGRGGAGF TG KW Sbjct: 116 VLRNCGVIDPNNIEDYIAEDGYMALAKVLSDMTPEQVIDEVTRSGLRGRGGAGFLTGRKW 175 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F +D Y+V NADE +PG +R ++ +PH++IEG +IA++AIGA +IY R Sbjct: 176 QFCRNSQADM-KYIVCNADEGDPGAFMNRRVLESDPHSVIEGMIIAAYAIGARQGYIYCR 234 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ ++L A+ + G LG N G+ D+ V GAGA++CGEETAL+ S+EG+ Sbjct: 235 AEYPLAVKTLNIAIKQAREFGFLGENILGTGFSFDLEVRQGAGAFVCGEETALMASIEGR 294 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR +PPFPA GL+G PT +NNVE+ A VP I+ +GA W++ G E ++GTK F+++ Sbjct: 295 RGEPRPRPPFPAVSGLWGKPTNINNVETYANVPQIILKGADWFASMGTEKSKGTKTFALA 354 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V + +E + IT E++ GGI+ A+ GG CLPA + +DY Sbjct: 355 GDVKHTGLIEVPLGITLREIVYDVGGGIKDD-KGFKAIQTGGPMGGCLPA-EFLDLPVDY 412 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L + GS +G+ ++VMD T ++ F + ESCG+CTPCR GT ++ ++ R+ Sbjct: 413 ESLTQAGSIMGSGGMVVMDEETCMVDIARFFMEFTQEESCGKCTPCRIGTRRLLEILTRI 472 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +G + +I+ L E+ I ++C LG A P+ +K FR E I + RC Sbjct: 473 CEGKGEDGDIERLEELCDQIRTASLCGLGQGAPNPVASTLKYFRHEYEAHIYE-KRC 528 >gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479] gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479] Length = 573 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 228/392 (58%), Gaps = 5/392 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + G + + K+L E D +I + SGLRGRGGAGF TG+KW +D+ Sbjct: 107 IEEYIGTGGYQALGKVLTEMTPDDVIQVLLDSGLRGRGGAGFPTGLKWKLAKGNDADQ-K 165 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+ NADE +PG DR ++ +PH ++E IA +AIGA +IYVR E+ + L+ Sbjct: 166 YVCCNADEGDPGAFMDRSVLEGDPHAVLEAMTIAGYAIGASQGYIYVRAEYPIAVQRLKI 225 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ LLG + G+ +I + GAGA++CGEETAL+ S+EG +G+PR +PPFPA Sbjct: 226 AIEQAREMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETALMVSIEGNRGEPRPRPPFPA 285 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT +NNVE+ A +P I+ G W++ G E ++GTK+F++ G ++ VE Sbjct: 286 QKGLFGKPTILNNVETWANIPQIILNGPEWFASMGTEKSKGTKVFALGGKIHNTGLVEVP 345 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M T E+IE+ GGI G A GG S C+PA I DYD L +GS +G+ Sbjct: 346 MGTTLREIIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHFDIPI-DYDNLVAIGSMMGS 403 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +IVMD ++ F ESCG+CTPCR GT M+ ++E++ KG A ++D Sbjct: 404 GGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKRMLEILEKITKGQATMADLDK 463 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L E+ I+ + CALG A P+ ++ FR Sbjct: 464 LEELCYYIKANSACALGQTAPNPVLSTLQYFR 495 >gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] Length = 631 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 156/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GFSTG KWSF SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ RGA WY G E + GTK+F+++G +N VE M T E+I GGI+ G Sbjct: 367 IINRGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F E +++ RC Sbjct: 545 PVLSTMRYFIDEYEAHVNE-KRC 566 >gi|152996297|ref|YP_001341132.1| NADH dehydrogenase [Marinomonas sp. MWYL1] gi|150837221|gb|ABR71197.1| NADH dehydrogenase (quinone) [Marinomonas sp. MWYL1] Length = 522 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 162/410 (39%), Positives = 231/410 (56%), Gaps = 5/410 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SLSD ++ + K L ++++VK SGLRGRGGA F Sbjct: 100 LKHQQRLTFARIGEIDPLSLSDYQKLNGFNGLKKALTMDSQALVDQVKESGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S++ Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 160 PTGIKWQTVLNAPSEQ-KYIVCNADEGDSGTFADRLVMECDPFMLIEGMIIAGLAVGATQ 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++L A+ Y + LLG + + G D+ V GAGAYICGEET+LL Sbjct: 219 GYIYLRSEYPLAYKTLNQAIGLAYGNNLLGRDIQGSGKHFDLEVRLGAGAYICGEETSLL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA VGL+G PT VNNV S+A VP IL +GA Y+ G +RGT Sbjct: 279 ESLEGKRGLVRAKPPLPAIVGLFGQPTVVNNVLSLAAVPFILDQGAKAYADCGMGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + EL+ GG R G L AV GG LP Q Sbjct: 339 LPFQLAGNVKRGGLVELAFGPKLSELMFDFGGGTRNGRP-LRAVQVGGPLGAYLPESQWD 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + G+ LG V++ D + D+ + F ESCG+CTPCR G+ + Sbjct: 398 -TQLDYEEFAKEGAVLGHGGVVMFDDTVDMSEQARFSMEFCVAESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V++R+ G I+LL ++ + + ++CA+G +P+Q +K+FR Sbjct: 457 EVIDRIRAGENVNSNIELLEDLCETMVDGSLCAMGGMTPFPVQSAMKHFR 506 >gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocystis sp. PCC 6803] gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocystis sp. PCC 6803] gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocystis sp. PCC 6803] Length = 533 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 150/403 (37%), Positives = 247/403 (61%), Gaps = 9/403 (2%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + ++ G ++ + K++ E + +I E+ SGLRGRGG G+ TG+KW+ + K+ + Sbjct: 134 ESIDEYIALGGYEQLHKVVYEMTPEEVIVEMNKSGLRGRGGGGYPTGLKWATVAKMPGQQ 193 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NADE +PG DR ++ +PH ++EG IA++A+GA+ +IYVR E+ + L Sbjct: 194 -KYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAAYAVGANHGYIYVRAEYPLAIQRL 252 Query: 137 QAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q A+ + GL+G+ +S + + +DI V GAGA++CGEETAL+ S+EGK+G PR +P Sbjct: 253 QKAIQQAKRYGLMGTQIFDSPIDFKIDIRV--GAGAFVCGEETALIASVEGKRGTPRPRP 310 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+PA GL+ PT +NNVE+ A V I+R G WY G E ++GTK+F+++G V Sbjct: 311 PYPAQSGLWQSPTLINNVETYANVVPIIREGGDWYGSIGTEKSKGTKVFALTGKVENAGL 370 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 +E M T +++E+ GG+ G + AV GG S C+PA ++ I +YD L +G+ Sbjct: 371 IEVPMGTTVRQVVEEMGGGVPNGG-QVKAVQTGGPSGGCIPADKLDTPI-EYDTLLALGT 428 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ +IVMD ST+++ F K ESCG+C PCR GT + ++ R ++G A + Sbjct: 429 MMGSGGMIVMDESTNMVDVAQFYMDFCKSESCGKCIPCRAGTVQLYDLLTRFLEGEATQE 488 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ L + ++ ++C LG +A P+ ++ FR EE + Sbjct: 489 DLIKLENLCHMVKETSLCGLGMSAPNPVISTLRYFRHEYEELL 531 >gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 613 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 163/422 (38%), Positives = 248/422 (58%), Gaps = 10/422 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTG 63 Q + +N + +S+ +S+G + V +L K + +I+EVK SGLRGRGG GF TG Sbjct: 133 QKLVLSNCGEINPESIEAYISKGGYQAVGNVLTKMKPQEVIDEVKNSGLRGRGGGGFLTG 192 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + Y++ NADE +PG D I+ +PH +IEG +IA+++IG+ +I Sbjct: 193 LKWQLARDSIGVK-KYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQGYI 251 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180 YVR E+ + L+ A+D+ G LG ++++I V GAGA++CGEETAL+ Sbjct: 252 YVRAEYPLAIKRLEKAIDQAKQYGFLGKEMFGEVFSFNIEIKV--GAGAFVCGEETALIA 309 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G PR KPPFPA GL+G PT +NNVE+ A +P I+ RGA ++ G + ++GTK Sbjct: 310 SIEGKRGMPRSKPPFPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTK 369 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS++G + VE M I+ E+I GG+ AV GG S CL ++ Sbjct: 370 VFSLTGKIENTGLVEVPMGISMKEIIYDIGGGVPNNR-KFKAVQIGGPSGGCLTEEKLDL 428 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + DYD L ++G+ +G+ ++VMD ++ F ESCG+CTPC EGT M+ Sbjct: 429 PV-DYDSLLQVGAIMGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLE 487 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++E++V G A+ ++D L ++K I+ +C LG AA PI +K FR EE I +Y Sbjct: 488 ILEKIVNGRAKIEDLDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYK 546 Query: 421 RC 422 +C Sbjct: 547 KC 548 >gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] Length = 631 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 155/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GFSTG KWSF SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASKGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ +GA WY G E + GTK+F+++G +N VE M T E+I GGI+ G Sbjct: 367 IINKGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F E +++ RC Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566 >gi|160902610|ref|YP_001568191.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] gi|160360254|gb|ABX31868.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] Length = 404 Score = 265 bits (678), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 141/396 (35%), Positives = 233/396 (58%), Gaps = 11/396 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 K L S+ + + L +IN++K SGLRGRGGAGF TG+KW + + D Sbjct: 8 KDLGKSLEEYDFPGLKNALNMEPQQVINKIKESGLRGRGGAGFPTGIKWETVLSI-EDDT 66 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +++ NADE EPGT KDR ++ + P ++EG +I+ +A G+ +IY+RGE++ + ++ Sbjct: 67 KFIICNADEGEPGTFKDRFLLENLPFKVLEGIIISGYATGSKYGYIYIRGEYVEAIKIIK 126 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+++ Y +LG N S +D+ ++ GAGAY+CG+ET+L+ S+EG +G+ R+KPP Sbjct: 127 KAIEKLYEKNILGENILNSDFSFDLKLV--RGAGAYVCGDETSLINSIEGDRGKSRIKPP 184 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 P GLYG PT VNNVE++A I+ + YS G E +RGTKL SISG VN P Sbjct: 185 LPVFEGLYGKPTVVNNVETLAAAAEIMSYDNNPYSEMGTEKSRGTKLVSISGDVNKPGVY 244 Query: 255 E-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E E +T +++++ GG++G + + VIPGG S L ++ Y+ L++MGS Sbjct: 245 EVEFGKLTVKDIVQELAGGVKG--EKIGFVIPGGISTEALTEEELD-VPYTYENLQKMGS 301 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK-GIAQK 372 +G+ +IV+ + ++ + +S F++ E+CG C PCREG + +++ + K G Sbjct: 302 NIGSGGMIVVSSQRNYLEIVKNVSDFFRDETCGTCFPCREGNKNINKIVSDIYKRGYPTS 361 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 REI+++ ++ + C G+++ I + + F Sbjct: 362 REIEIISDIQYAVSSAARCGFGESSLNLILSIFEKF 397 >gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 627 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 218/384 (56%), Gaps = 21/384 (5%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCK 93 E+G ++ E++ SGLRGRGGAGF + +KW + C D HY++ NADE EPGT K Sbjct: 190 ERGPTGLLWEIERSGLRGRGGAGFGSDIKW----RSCRDAWGDAHYVICNADEGEPGTFK 245 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152 DR ++ +++G IA AIGA+ FIY+RGE+ + L+ + + LLG N Sbjct: 246 DRVLLSSYFDLVVDGMCIAGMAIGANKGFIYLRGEYRYLLDRLETRLAQRREQNLLGRNI 305 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G+ DI +H GAGAYICGEE+AL+ESLEGK G+PR++PPFP G G PTTVNNVE Sbjct: 306 LGRGFSFDIEIHLGAGAYICGEESALIESLEGKPGKPRIRPPFPVTNGYRGQPTTVNNVE 365 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++A+ I RG W+ G + GTKL S+SG V P E +T E++E Sbjct: 366 TLALAALIAVRGGDWFHAIGTPASTGTKLLSVSGDVERPGIYEFPFGVTVAEVLEA---- 421 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 G + AV G++ CL A + G + ++ + GS ++V DRS D+ + Sbjct: 422 --AGARDTQAVTSAGAAGHCLAADEF-GRRIAFEDVATGGS------IMVFDRSRDMFEV 472 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + F+ HESCG CTPCR GT R++++L ++D + ++ + ++G + C Sbjct: 473 AHNFAHFFAHESCGFCTPCRVGTAVNARLLDKLAADHGSPYDLDEIAKMHRLMQGASHCG 532 Query: 393 LGDAAAWPIQGLIKNFRPLIEERI 416 LG+ A I ++ FRP E R+ Sbjct: 533 LGNTATIAIDDMLAKFRPAFERRL 556 >gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. 230613] Length = 631 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 155/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GFSTG KWSF SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ +GA WY G E + GTK+F+++G +N VE M T E+I GGI+ G Sbjct: 367 IINKGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F E +++ RC Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566 >gi|188995984|ref|YP_001930235.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] gi|188931051|gb|ACD65681.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] Length = 523 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 163/413 (39%), Positives = 235/413 (56%), Gaps = 11/413 (2%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +Q RI GL S+ D S G + + K + + II E+K SGLRGRGGAG Sbjct: 101 FFKNQTRITFERVGLVDPLSIKDYQSNGGFLGLKKAISMKSEEIIEEIKKSGLRGRGGAG 160 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + K SD+ Y+V NADE + GT DR IM +P LIEG VIA A+GA Sbjct: 161 FPTGIKWETVFKTGSDK-KYVVCNADEGDSGTFSDRMIMESDPFLLIEGMVIAGLAVGAD 219 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ +E L A+D Y + LG N G D D+ V+ GAG+Y+CGEETAL Sbjct: 220 EGYIYLRSEYPLAKEVLTKAIDLAYKNRYLGKNILGSGKDFDLEVYVGAGSYVCGEETAL 279 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP+PA GL+ PT +NNV ++A VP I+R G Y +G +RG Sbjct: 280 LESLEGKRGVVRPKPPYPAINGLWNKPTLINNVNTLATVPWIIREGGDKYFNYGVGKSRG 339 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAG 296 T +SG+V +P VE I+ +++ GG + G A+I P G +P Sbjct: 340 TIAIQLSGNVKHPGLVEVPFGISIKDIVYGFGGGTKTGKKVKAALIGGPFGIYIP----E 395 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGT 355 M +DY+ L ++G +G +++V D D +K + R ++ F ESCG+C PCR G+ Sbjct: 396 SMFDISIDYESLSKIGGTIGHGSIVVFDEEAD-LKYLARFAMEFCFIESCGKCAPCRIGS 454 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++++L+ +R I + ++S+ + ++C LG A PI L K+F Sbjct: 455 IRGLEILDKLLNQGRDERLISMFVDLSEVMINTSLCGLGGMAPKPILSLFKHF 507 >gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5] gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5] Length = 628 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 154/411 (37%), Positives = 242/411 (58%), Gaps = 5/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + +S G ++ ++K+L + + +I E+ S LRGRGG GF TG KW Sbjct: 149 VLKNCGQIDAEHIQEYISTGGYEALEKVLFNMKPEEVIQEITESNLRGRGGGGFQTGYKW 208 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA +IYVR Sbjct: 209 SQVARQ-QEKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGASEGYIYVR 267 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ L+ A+ + GLLG + G+ + ++ GAGA++CGE +AL S+EG Sbjct: 268 AEYPLAISRLKLAIAQAEECGLLGDDILGTGFSFHLHINRGAGAFVCGEGSALTASIEGN 327 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G E++ GTK F+++ Sbjct: 328 RGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIINEGADWFKSIGPESSPGTKAFALT 387 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V + +E M T E+I GGI+G + AV GG S CL + +D+ Sbjct: 388 GSVKHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPHLD-INLDF 445 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT M+ ++ER+ Sbjct: 446 DSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERI 505 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V G + ++DLL E++ I +C LG +AA P+ +K FR E+ + Sbjct: 506 VAGNGKMEDLDLLEELANTITDTALCGLGKSAALPVVSTLKLFREEYEQHV 556 >gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 625 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 151/407 (37%), Positives = 238/407 (58%), Gaps = 5/407 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q RI G + +++ + ++ G + + K L+ + I + + LRGRGGAGF G Sbjct: 143 QSRIVLEHCGKINPENIKEYIAAGGYQALAKALQMTPEEICQVMLKAKLRGRGGAGFPAG 202 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + K SD Y++ N DE +PG DR IM +PH +IEG +IA +A GA +I Sbjct: 203 IKWDSVRKQKSDV-KYVICNGDEGDPGAFMDRSIMEGDPHRVIEGMIIAGYASGATQGYI 261 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ L+ A+++ GLLG N G+D DI ++ GAGA++CGE +AL+ S+ Sbjct: 262 YVRAEYPLAVRRLKKAIEQAREFGLLGKNILGSGFDFDIKINMGAGAFVCGEGSALIASI 321 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++G P+ +PP GL+G PT +NNVE+ A VP I+ GA WY G E + GTK F Sbjct: 322 EGQRGMPKTRPPRTVEKGLFGKPTVLNNVETYANVPMIILNGADWYLSIGTETSPGTKAF 381 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G++ +E M T E+I + GGI G + L AV GG S CL + Sbjct: 382 ALTGNIVNTGLIEVPMGTTLREVIYEIGGGIPNGKE-LKAVQIGGPSGGCLTKEHLD-LP 439 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L +G+ +G+ ++VMD T +++ F + ESCG+C PCREGT M++++ Sbjct: 440 LDFDTLGTVGAMIGSGGMVVMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKRMLKLL 499 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 E++ G +++++LL E++ ++ ++C LG A P+ +K FR Sbjct: 500 EKITSGKGTEKDLELLEELAVTVKDGSLCGLGQTAPNPVLTTLKYFR 546 >gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 598 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 221/368 (60%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ +K SGLRGRGG GF TG+KW F K + Y+ NADE +PG DR ++ +P Sbjct: 155 VVDTLKKSGLRGRGGGGFPTGLKWEFAAKQ-PEGQKYVCCNADEGDPGAFMDRSVLEGDP 213 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H++IE IA +AIG++ +IYVR E+ + LQ A+++ GLLG N + D+ Sbjct: 214 HSVIEAMAIAGYAIGSNQGYIYVRAEYPIAVKRLQIAIEQAKEYGLLGKNIFGTDFSFDL 273 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ Sbjct: 274 EIRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLWEKPTILNNVETYANIPMII 333 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +GA W+S G E ++GTK+F++ G +N VE M T E++ GGI G Sbjct: 334 LKGAEWFSSIGTEKSKGTKVFAVGGKINNTGLVEIPMGTTLREVLYDIGGGIPNG-KKFK 392 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA + I DYD L ++GS +G+ +IVMD ++ F Sbjct: 393 AAQTGGPSGGCIPASHIDTPI-DYDSLIQLGSMMGSGGLIVMDEDNCMVDIAKFFLEFTV 451 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ ++ER+ +G + +I+ L ++KNI+ +C LG A P+ Sbjct: 452 DESCGKCPPCRIGTKRMLEILERITEGKGEIGDIEKLEILAKNIKASALCGLGQTAPNPV 511 Query: 402 QGLIKNFR 409 +K F+ Sbjct: 512 LSTLKYFK 519 >gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] Length = 624 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/402 (37%), Positives = 234/402 (58%), Gaps = 5/402 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 K + D M RG + ++ K+L + + +I VKASGLRGRGG GF TG+KW F K ++ Sbjct: 157 KKIEDYMGRGGYKSLLKVLSSMKPEEVIETVKASGLRGRGGGGFPTGLKWEFTYKAKGEK 216 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 ++V NADE +PG +R ++ +PH+++EG +IA++ +GA + Y+R E+ E Sbjct: 217 -KFVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTVGAQKGYAYIRAEYPIAVEMF 275 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ GLLG N G+ D+ V GAGA++CGEETALL S+EGK+G PR +PPF Sbjct: 276 NKAINDAKKMGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGVPRPRPPF 335 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE+ A + I+R G Y G E + GTK+FS++G + +E Sbjct: 336 PAQKGLWGYPTLINNVETYANIAKIIRDGVENYRKRGVEKSPGTKMFSVTGPLKLTGIIE 395 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ++E CGG G L A+ GG S CLP + +DYD LK + + + Sbjct: 396 IEFGTTIRYVLENICGGTVEG-KKLKAIQIGGPSGACLPE-KYFDLPLDYDTLKSVDAMV 453 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++ + + +++ F K ESCG+C PCREGT ++E+ +G A ++ Sbjct: 454 GSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQSYTILEKFTQGKATHEDL 513 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + L ++K ++ ++C LG A PI +K+FR E I+ Sbjct: 514 ENLESLAKIVKTASLCGLGKTAPNPILSTLKHFRDEYMEHIN 555 >gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 626 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/398 (36%), Positives = 235/398 (59%), Gaps = 6/398 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +S+ + ++ + V K L + + +++E+ S LRGRGG GF TG KWS + + Sbjct: 154 INAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGGGFQTGRKWSQVLQQ- 212 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +++ Y+V N DE +PG DR +M +PH +IEG +IA A A+ +IYVR E+ Sbjct: 213 AEKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKANYGYIYVRAEYPLAV 272 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + LQ A+D+ GLLG N G+D D+ + GAGA++CGE +AL S+EG +G PR+K Sbjct: 273 KRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSALTASIEGNRGMPRVK 332 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PP GL+ PT +NNVE+ VP+I+ +G+ WY G E N GTK F+++G+V + Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNYGTKAFALTGNVKHTG 392 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEM 311 +E M E+I GG++ G AV GG S CL G+ + +D+D LK++ Sbjct: 393 LIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGENHLELPLDFDSLKKV 450 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ ++VM+ + +++ F ++ESCG+C PCREGT M+ ++ +V+G Sbjct: 451 GAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTKRMLEILTDIVEGRGT 510 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D+L E+S I +C LG +A+ P++ +K FR Sbjct: 511 LEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFR 548 >gi|124265531|ref|YP_001019535.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124258306|gb|ABM93300.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 573 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 150/376 (39%), Positives = 225/376 (59%), Gaps = 24/376 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E+ + +++ ++ASGLRG GGAGF G KW + + + P + VN DE EPGT KDR Sbjct: 212 ERPLETVLSTMEASGLRGLGGAGFPAGRKWRIVREQAA--PRLMAVNIDEGEPGTFKDRH 269 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +PH +EG +IA++A+G +IY+R E+ R L+ + L ++ + Sbjct: 270 YLERDPHRFLEGLLIAAWAVGVDAVYIYLRDEYHGCRTLLEREL------AALRADPPMR 323 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT +N E++ Sbjct: 324 DMPAIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYW 383 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V IL +G W++G GR +G + FS+SG V P IT EL++++CGG+ G Sbjct: 384 VRDILEKGGDWFAGHGRHERKGLRSFSVSGRVKKPGVHLAPAGITLRELVDEYCGGMLDG 443 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAI 333 L A +PGG+S LP ++ +D+D L+ G +G+AAV+V+ DR TD+ + + Sbjct: 444 -HQLHAYLPGGASGGILPE-RLADVPLDFDTLQPHGCFIGSAAVVVLSDQDRVTDVARNL 501 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICA 392 R F++HESCGQCTPCR GT + + IA R ++ LL E+S+ + +IC Sbjct: 502 MR---FFEHESCGQCTPCRSGTAKVNEL-------IASDRWDLPLLAELSQVMRDASICG 551 Query: 393 LGDAAAWPIQGLIKNF 408 LG AA P+ +IK F Sbjct: 552 LGQAAPNPVDCVIKYF 567 >gi|270308048|ref|YP_003330106.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] gi|270153940|gb|ACZ61778.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] Length = 626 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 161/416 (38%), Positives = 243/416 (58%), Gaps = 11/416 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + S+ D ++ G + ++ K + + + I++E+ SGLRGRGG GF TG KW Sbjct: 147 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISGLKPEEIVDEIIKSGLRGRGGGGFPTGWKW 206 Query: 67 SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 K C D Y++ N DE +PG DR +M PH++IEG +I ++AIG+H A+I Sbjct: 207 ----KSCRDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYI 262 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ A+ + GLLG N G+++ I ++ G GA++CGE TAL+ SL Sbjct: 263 YIRDEYPMAVRHALLAIKQAEDYGLLGGNILGSGFNLKIHINRGGGAFVCGESTALMASL 322 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++GTK+F Sbjct: 323 EGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIMEKGADWFNKIGTAGSKGTKIF 382 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+ G VN +E M IT E++ GGI G A+ GG S CLP M Sbjct: 383 SLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLP 440 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG M +++ Sbjct: 441 VDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQIL 500 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 E++ KG ++ +I+LL ++S+ I+ ++CALG +A P+ IK FR E I Q Sbjct: 501 EKITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 556 >gi|145589293|ref|YP_001155890.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047699|gb|ABP34326.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 600 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/386 (39%), Positives = 223/386 (57%), Gaps = 19/386 (4%) Query: 25 SRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 ++G + +I E RD II +++SGLRG GGAGF G KW + + P + V Sbjct: 227 AKGGYALAKEIAEGKRDAESIIKAMESSGLRGLGGAGFPAGRKWRIVKDQVA--PKLMAV 284 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N DE EPGT KDR + +PH +EG +IA+ +G +IY+R E+ RE LQ +D+ Sbjct: 285 NIDEGEPGTFKDRTYLERDPHRFLEGLLIAASVVGIDACYIYLRDEYHGCRELLQLEIDK 344 Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 L +N + I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+ Sbjct: 345 ------LKANPPFKLPL-IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLF 397 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PT +N E++ V I++RG W+S FGR + +G + FS+SG V P IT Sbjct: 398 GRPTLEHNFETLYWVRDIVQRGPEWFSSFGRHDRKGLRSFSVSGRVKKPGVKLAPAGITI 457 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 ELI+++CGG++ G +PGG+S LPA M +D+D L+ G +G+AAV+V Sbjct: 458 QELIDEYCGGMQEG-HQFYGYLPGGASGGILPA-TMNDIPLDFDTLQPYGCFIGSAAVMV 515 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 + F++HESCGQCTPCR GTG ++M+ A+ + L +++ Sbjct: 516 FSNQDKARDMALNVMHFFEHESCGQCTPCRVGTGKAAKLMQ------AKSWDQTTLEDLA 569 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + +IC LG AA PI+ + K F Sbjct: 570 TVMVDASICGLGQAAPNPIRCIHKYF 595 >gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] Length = 620 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/403 (37%), Positives = 229/403 (56%), Gaps = 9/403 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D ++ + + + E +I EVK S L GRGGA F G+KW K + P Sbjct: 220 ESIDDYLATDGYAGLRRAFEMEPAQVITEVKDSRLMGRGGAAFPAGIKWESTAKQPAT-P 278 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV NADESEPGT KDR I+ +P LIE IA +AIGA +IY+RGE+ R L Sbjct: 279 RYLVCNADESEPGTFKDRSILEGDPFALIESMTIAGYAIGAERGYIYLRGEYPRAYRMLS 338 Query: 138 AAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ G LG N + G+ ++ + GAGAYICGEETA+ S+EG +G+PR KPPFP Sbjct: 339 NAIEKARERGFLGENIQGKGWSFELEIRRGAGAYICGEETAIFNSIEGYRGEPRTKPPFP 398 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE++ VP I++ G + Y+ G E + G KLF +SG++ P E Sbjct: 399 FEAGLFGKPTVVNNVETLCNVPLIMQLGGAEYAKIGTEGSTGPKLFCVSGNLVRPGVYEV 458 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T +++E GG+ G L AV+ GG++ + A ++ + ++G++ + LG Sbjct: 459 PFGATLGDILEL-AGGVPQGR-KLQAVLLGGAAGVFVRADEL-DIPLTFEGVRAAKATLG 515 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT----GWMMRVMERLVKGIAQK 372 + V+ D + D+ + R++ F++ ESCGQC PCR GT ++R+M A+ Sbjct: 516 SGVVLAFDDTVDLSGILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIMHNGHDAKAKG 575 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +I +L +V ++ +IC LG AA ++ I L E + Sbjct: 576 NDIHILRDVGLVMKDASICGLGQAAWNAVESAIDRLGVLEESK 618 >gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 634 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 157/421 (37%), Positives = 245/421 (58%), Gaps = 9/421 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTG 63 Q I + + KS+ D ++ G + + K+L K + ++ EVK S LRGRGG GF Sbjct: 136 QRNILSENIRIDSKSIDDYLAIGGYSALSKVLFKMTPEEVMGEVKKSNLRGRGGGGFPAW 195 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW + D Y++VNADE +PG DR ++ PH+++EG +I ++A+GAH FI Sbjct: 196 RKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGAHEGFI 254 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLES 181 YVR E+ ++ A+ + GL+G N LG +D + VH GAGA++CGE +AL+ + Sbjct: 255 YVRQEYPLAVVNINLAIRQAEERGLVGKNI-LGSNFDFTVKVHMGAGAFVCGESSALMTA 313 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG+ G+PR K A G++ P+ +NNVE+ A V I+ +GA W++ FG E ++GTK+ Sbjct: 314 LEGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIINKGADWFTQFGTEGSKGTKI 373 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+ G + VE M +T ++I+ GG G AV GG S C+P Q+ Sbjct: 374 FSLVGKITNTGLVEVPMGVTLKDIIQNI-GGGIPGGKKFKAVQTGGPSGGCIPEAQL-DL 431 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 ++D+D L + GS +G+ +IVMD T ++ F K ESCG+CTPCREG M++V Sbjct: 432 VVDFDQLTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQMLKV 491 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + + G ++ +I+LL E++++ G +CALG +A P+ I+ FR E I ++ + Sbjct: 492 LTNITTGKGKEGDIELLEELAEST-GAALCALGKSAPNPVLSTIRYFREEYEAHI-RHKK 549 Query: 422 C 422 C Sbjct: 550 C 550 >gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] Length = 628 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/404 (38%), Positives = 238/404 (58%), Gaps = 5/404 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + ++ G + + K+L E + ++ EV S LRGRGG GF TG KW Sbjct: 149 VLENCGHIDAEHIEEYIAHGGYKALGKVLFEMKPEEVVQEVLDSNLRGRGGGGFQTGYKW 208 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + + + Y+V N DE +PG DR IM +PH +IEG +IA++A+GA +IYVR Sbjct: 209 SQVARQ-PETTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGAQEGYIYVR 267 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ L+ A+ + GLLG + G+ + ++ GAGA++CGE +AL S+EG Sbjct: 268 AEYPLAISRLKLAIRQAQERGLLGDDILGSGFSFRLHINRGAGAFVCGEGSALTASIEGN 327 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP GL+ PT +NNVE+ A VP I+ RGA WY G EN+ GTK F+++ Sbjct: 328 RGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIISRGADWYKTIGPENSPGTKAFALT 387 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +E M T E+I GGI+G + AV GG S CL Q +D+ Sbjct: 388 GSVKNTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLIT-QHLDISLDF 445 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT M+ ++ER+ Sbjct: 446 DSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERI 505 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 V+G ++ ++D L E+++ I +C LG +AA P+ +K FR Sbjct: 506 VQGNGREEDLDTLDELARTITETALCGLGKSAALPVMSTLKLFR 549 >gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA] gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA] Length = 596 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/421 (37%), Positives = 240/421 (57%), Gaps = 7/421 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +++ + + G + + K+L E D +I + +GLRGRGGAGF T Sbjct: 114 QHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGAGFPT 173 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +D+ Y+ NADE +PG DR ++ +PH L+E IA +AIG++ + Sbjct: 174 GLKWKLCKQNDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGSNQGY 232 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 +YVR E+ + L A+ + LLG N G+D D+ + GAGA++CGEETAL+ S Sbjct: 233 VYVRAEYPIAVDRLNIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETALMTS 292 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G+PR +PPFPA GL+G P+ +NNVE+ A +P I+ G W++ G E ++GTK+ Sbjct: 293 IEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSKGTKV 352 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++ G +N VE M T +I++ GGI G A GG S C+PA Sbjct: 353 FALGGKINNTGLVEVPMGTTLRTVIDEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHFDIP 411 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DYD L +GS +G+ +IVMD ++ F ESCG+CT CR GT M+ + Sbjct: 412 I-DYDNLLSIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKRMLEI 470 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +E++ KG A+ ++D L E+ ++ ++C LG A P+ + FR E I + R Sbjct: 471 LEKITKGTAEMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIKE-RR 529 Query: 422 C 422 C Sbjct: 530 C 530 >gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] Length = 631 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 155/383 (40%), Positives = 224/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GFSTG KWSF SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ GA WY G E + GTK+F+++G +N VE M T E+I GGI+ G Sbjct: 367 IINGGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F E +++ RC Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566 >gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] Length = 595 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/408 (38%), Positives = 233/408 (57%), Gaps = 6/408 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + + + + + G + + K+L E D +I + SGLRGRGGAGF T Sbjct: 113 QHRIALRNCGVINPEEIEEYIGTGGYQALGKVLTEMTPDEVIQVLLDSGLRGRGGAGFPT 172 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +D+ Y+ NADE +PG DR ++ +PH L+E IA +AIGA + Sbjct: 173 GLKWKLASQNDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMTIAGYAIGASQGY 231 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+++ LLG + G+ +I + GAGA++CGEETAL+ S Sbjct: 232 IYVRAEYPIAVQRLKIAIEQARKMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETALMVS 291 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ G W++ G E ++GTK+ Sbjct: 292 IEGNRGEPRPRPPFPAQKGLFGKPTILNNVETYANIPQIILNGPEWFASMGTEKSKGTKV 351 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++ G ++ VE M T E+IE+ GGI G A GG S C+P Sbjct: 352 FALGGKIHNTGLVEVPMGTTLREIIEEIGGGIPNG-KKFKAAQTGGPSGGCIPVEHYDIP 410 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DYD L +GS +G+ +IVMD + ++ F ESCG+CTPCR GT M + Sbjct: 411 I-DYDNLISIGSMMGSGGLIVMDETDCMVDIAKFFLEFTVEESCGKCTPCRIGTKRMHEI 469 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++++ KG A ++D L E+ ++ + C LG A P+ +K FR Sbjct: 470 LDKITKGQATLEDLDRLEELCYYVKENSACGLGQTAPNPVLSTLKFFR 517 >gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400] gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Burkholderia xenovorans LB400] Length = 610 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 215/384 (55%), Gaps = 22/384 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKD 94 +G + +E+ S LRGRGGAGF TGMKW ++C D P HY+V NADE EPGT KD Sbjct: 208 RGVPALFDEMNRSNLRGRGGAGFVTGMKW----RLCRDAPGTEHYIVCNADEGEPGTFKD 263 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152 R ++ P ++EG I + AIGA +Y+RGE+ E L + + LLG++ Sbjct: 264 RVLLTRHPDMVVEGMTIGALAIGARRGMLYLRGEYRYLLEPLLDVLQRRREAHLLGASIL 323 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA G PT V+NVE Sbjct: 324 GHAGFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLQQPTVVDNVE 383 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++ + +G +W+S G + GT L S+SG P E + + D ++E CG Sbjct: 384 TLCAATHVALQGGAWWSAIGTPKSTGTSLHSVSGDCERPGIYEYPLGTSVDRILED-CGA 442 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + AV GG S CL A + G + ++ + G A +V DRS D+ + Sbjct: 443 -----RDTQAVQVGGPSGKCLSAIEF-GHRIAFEDVPSAG------AFMVFDRSRDMFEV 490 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + F+ ESCG CTPCR GT +++ M++L G + +++LL ++ + G T C Sbjct: 491 ARNYAGFFAEESCGFCTPCRVGTALVVKSMDKLAAGRGSRHDVELLSDIDILMHGTTHCG 550 Query: 393 LGDAAAWPIQGLIKNFRPLIEERI 416 LG +A + I FRP E R+ Sbjct: 551 LGGSACNALHDTIVKFRPAYERRL 574 >gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B [Herminiimonas arsenicoxydans] gi|133737538|emb|CAL60581.1| NADH dehydrogenase (Quinone) [Herminiimonas arsenicoxydans] Length = 567 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 215/372 (57%), Gaps = 16/372 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E+ + ++ ++ SGLRG GGAGF G KW + P + VN DE EPGT KDR Sbjct: 207 ERDVESVLKTMEDSGLRGLGGAGFPAGRKWRIVRG--EKGPRLMAVNIDEGEPGTFKDRV 264 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +PH +EG +IA++A+ +IY+R E+ R L+A + + L +N + Sbjct: 265 YLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRVMLEAELAK------LKANPPIA 318 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT +N E++ Sbjct: 319 NMPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYW 378 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V IL +G W++ GR +G + +S+SG V P IT ELI++HCGG+ G Sbjct: 379 VRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAGITIQELIDEHCGGMLDG 438 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 +PGG+S LPA M +D+D L+ G +G+AAVIVM ++A + Sbjct: 439 -QTFYGYLPGGASGGILPA-SMNDIPLDFDTLQPYGCFIGSAAVIVMSDKDTAVQAARNM 496 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 F+KHESCGQCTPCR GT ++++ K ++ LL ++S + +IC LG A Sbjct: 497 MDFFKHESCGQCTPCRVGTAKAAELIKK------PKWDVGLLEDLSLVMRDSSICGLGQA 550 Query: 397 AAWPIQGLIKNF 408 A PI ++K F Sbjct: 551 APNPIDCVVKYF 562 >gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio fructosovorans] Length = 490 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/416 (36%), Positives = 233/416 (56%), Gaps = 6/416 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q RI T G + +S+ D ++ ++ + K+L +++ VK SGLRGRGGAGF TG Sbjct: 10 QLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFPTG 69 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW +D+ Y+V NADE +P DR ++ +PH+++E I +AIGA + Sbjct: 70 IKWGIALGNKADQ-KYMVCNADEGDP-EFMDRAVLEGDPHSVVEAMAIGGYAIGATRGTV 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + L+ A+D+ GLLG N G+D DI + +GAGA++CGEETAL+ S+ Sbjct: 128 YIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIRSM 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G+P KPPFPA G + PT VNNVE+ A +P I+ GA W+SG G ++GTK+F Sbjct: 188 EGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTKVF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G + +E M I+ E+I GG G AV GG S L + AI Sbjct: 248 ALAGKIQNVGLIEVPMGISLREVIFDIGGGCPDG-KAFKAVQTGGPSGGALANKDLDVAI 306 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + ++ Sbjct: 307 -DYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEIL 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +R+ KG + ++D L +S+ I+ +C LG PI + F E +D Sbjct: 366 DRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD 421 >gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] Length = 633 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 217/369 (58%), Gaps = 17/369 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 RD ++ ++ SGLRG GGAGF G KW + + P + VN DE EPGT KDR + Sbjct: 247 RDAVLAAMEDSGLRGLGGAGFPAGRKWRIVRE--QPAPRLMAVNIDEGEPGTFKDRTYLE 304 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +PH +EG ++A+ +G ++Y+R E+ R LQ A+ E A + Sbjct: 305 RDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQQALAELRADPPCALPA------ 358 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I++ GAGAYICGEE+A++ES+EG++G+PR++PP+ A VGL+G PT +N E++ V Sbjct: 359 -IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRD 417 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I++ G W++GFGR RG + FS+SG V P IT EL++++CGG+ G + Sbjct: 418 IVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMAEGHE- 476 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA ++ +D+D L+ G +G+AAVIV+ R+ A + F Sbjct: 477 LYAYLPGGASGGILPA-RLADVPLDFDTLQPYGCFIGSAAVIVLGRNDRARDAALNVMRF 535 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 + HESCGQCTPCR GT R+M+ A + D L +++ + +IC LG AA Sbjct: 536 FAHESCGQCTPCRVGTDKAARLMQ------APVWDGDTLDDLALVMADASICGLGQAAPN 589 Query: 400 PIQGLIKNF 408 PI+ + K F Sbjct: 590 PIRCMHKYF 598 >gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 605 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 156/404 (38%), Positives = 233/404 (57%), Gaps = 11/404 (2%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ + ++ D ++R + + K+L+ + +I+EV+ SGLRGRGGAGF TG+KW Sbjct: 130 NIGEIDPANIQDYIARDGYQALAKVLKSMSPEQVIDEVQRSGLRGRGGAGFPTGLKW--- 186 Query: 70 PKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 K C+ + P Y+V N DE +PG DR IM +PH++IEG +I ++A+GA FIYVR Sbjct: 187 -KACASQAAEPRYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGAAAGFIYVR 245 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ +L A+++ SG LG N G+ DI + G GA++CGEETALL S+EG Sbjct: 246 DEYDLAVVNLGRAIEDARRSGYLGDNILGSGFSFDIEIVRGGGAFVCGEETALLASIEGN 305 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR K +P GL+G PT +NNVES A VP I+ RGA ++ G ++GTK+FS+ Sbjct: 306 VGEPRDKYVYPTEKGLWGQPTVINNVESWANVPVIINRGADEWARVGTATSKGTKVFSLV 365 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V VE M T E+I GGI G AV GG S C+PA + + D+ Sbjct: 366 GKVYNTGLVEVPMGTTLREIIFDIGGGIPNG-RQFKAVQTGGPSGGCIPASLIDLPV-DF 423 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L +GS +G+ +IVMD T +++ F ESCG+C PCREG M+ ++ R+ Sbjct: 424 DSLTSVGSMMGSGGMIVMDDRTCMVEVARYYLNFLAGESCGKCVPCREGIRRMLEILTRI 483 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++++L + + ++ ++C LG A P+ ++ FR Sbjct: 484 CNAQGHPEDLEILSSLGETLQVASLCGLGKTAPNPVLSTLRYFR 527 >gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7] gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7] Length = 631 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 151/387 (39%), Positives = 227/387 (58%), Gaps = 8/387 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I E D ++ + SGLRGRGG GF TG KWSF +D+ Y++ NADE +PG D Sbjct: 182 ITEMSADDVVKLIIDSGLRGRGGGGFPTGKKWSFAKAYDADQ-KYIICNADEGDPGAFMD 240 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152 R I+ +PH+++E IA +AIGA IY+R E+ L+ A+D+ G+LG+N Sbjct: 241 RSILEGDPHSVLEAMAIAGYAIGASKGVIYIRAEYPLAVSRLKTAIDQALECGVLGNNIL 300 Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 S+ +++DI +GAGA++CGEETAL+ S+EG +G+P KPPFPA GL+ PT VNNV Sbjct: 301 GSEFSFNIDI--RYGAGAFVCGEETALIHSVEGCRGEPTNKPPFPAESGLWDKPTCVNNV 358 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++A +P I+ GA WYS G ++GTK+F+++G +N VE M T E+I G Sbjct: 359 ETLANIPAIINNGAEWYSSIGTATSKGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGG 418 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 GI+ G +V GG S C+PA + I DY+ L +GS +G+ +IVMD ++ Sbjct: 419 GIKNGR-KFKSVQTGGPSGGCIPASNLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVD 476 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 F ESCG+CTPCR G ++ ++ ++ G + +++ L E+++ I+ ++C Sbjct: 477 IAKFYLEFTVEESCGKCTPCRIGNKRLLEILTKITNGQGTEDDLEKLKELAQTIKDTSLC 536 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LG A PI +K F E + + Sbjct: 537 GLGQTAPNPILSTMKYFADEYEAHVKE 563 >gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Alicycliphilus denitrificans BC] gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans BC] Length = 633 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 217/369 (58%), Gaps = 17/369 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 RD ++ ++ SGLRG GGAGF G KW + + P + VN DE EPGT KDR + Sbjct: 247 RDTVLAAMEDSGLRGLGGAGFPAGRKWRIVRE--QPAPRLMAVNIDEGEPGTFKDRTYLE 304 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +PH +EG ++A+ +G ++Y+R E+ R LQ A+ E A + Sbjct: 305 RDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQQALAELRADPPCALPA------ 358 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I++ GAGAYICGEE+A++ES+EG++G+PR++PP+ A VGL+G PT +N E++ V Sbjct: 359 -IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRD 417 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I++ G W++GFGR RG + FS+SG V P IT EL++++CGG+ G + Sbjct: 418 IVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMAEGHE- 476 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA ++ +D+D L+ G +G+AAVIV+ R+ A + F Sbjct: 477 LYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGSAAVIVLGRNDRARDAALNVMRF 535 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 + HESCGQCTPCR GT R+M+ A + D L +++ + +IC LG AA Sbjct: 536 FAHESCGQCTPCRVGTDKAARLMQ------APVWDGDTLDDLALVMADASICGLGQAAPN 589 Query: 400 PIQGLIKNF 408 PI+ + K F Sbjct: 590 PIRCMHKYF 598 >gi|313673509|ref|YP_004051620.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] gi|312940265|gb|ADR19457.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] Length = 536 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 241/399 (60%), Gaps = 6/399 (1%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 ++ G+ + + E D +INEV SGLRGRGG G+ TG+KWS + K+ S Y+V N Sbjct: 129 LNEGYKAFLKCLNELSPDEVINEVIKSGLRGRGGGGYPTGLKWSTVGKIQSPI-KYVVCN 187 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADE +PG DR I+ +PH +IEG +IA++A+GA+ ++YVR E+ + L+ A+ Sbjct: 188 ADEGDPGAFMDRAILESDPHKVIEGMLIAAYAVGANRGYVYVRAEYPLAIKRLKTAIKNA 247 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 LLG+N + ++ ++ V GAGAY+CGEETAL+ S+EGKKG PR +PP+PA G+ Sbjct: 248 ERFNLLGANIAGTTFNFNLEVRLGAGAYVCGEETALIASIEGKKGTPRPRPPYPAESGIK 307 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PT +NNVE+ A + TI+ G+ W++ G + ++GTK+F++SG++ VE M I Sbjct: 308 NYPTLINNVETYANISTIINNGSEWFASIGTDKSKGTKVFALSGNIKNTGLVEVPMGIKL 367 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +LI + GGI + AV GG S C+P+ + ++ DY+ L +GS +G+ +IV Sbjct: 368 YDLIFEIGGGIPNDKE-FKAVQTGGPSGGCIPSEYLNTSV-DYESLTHLGSIMGSGGMIV 425 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 MD +T ++ F K ESCG+C PCR GT + +++++ KG +R++ + +++ Sbjct: 426 MDENTCMVDMAKFFIDFCKSESCGKCAPCRNGTVQLYEILDKITKGEGNERDLITMIKIA 485 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++ ++C LG +A P+ K F+ E + HR Sbjct: 486 NTMKKTSLCGLGQSAPNPVLSAFKYFKDEFYEHV--LHR 522 >gi|302037260|ref|YP_003797582.1| formate dehydrogenase subunit beta [Candidatus Nitrospira defluvii] gi|300605324|emb|CBK41657.1| Formate dehydrogenase, beta subunit [Candidatus Nitrospira defluvii] Length = 498 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 152/409 (37%), Positives = 225/409 (55%), Gaps = 7/409 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R F N + +L + +RG ++ L G D II E++ S LRGRGGA Sbjct: 86 FLAQQTRFTFANFGETEPLALDEYQARGGLSGLETALRIGPDAIIEELRVSQLRGRGGAA 145 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F KW + +D Y+V NADE + GT DR I+ +P L+EG +I + AIGA Sbjct: 146 FPVWNKWKVAQQARADD-KYVVANADEGDAGTYCDRMILEGDPFRLLEGMLICARAIGAG 204 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y R E+ ++L+AA+ + + LL + G I V GAG+Y+CGEETALL Sbjct: 205 RGYVYCRQEYPAAAKTLRAAIQKADEAELLELD---GEPFPIEVVEGAGSYVCGEETALL 261 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R +PP+PA GLYG PT V+NV + A +P IL RG +W++ G + +RGT Sbjct: 262 ESLEGKRGVVRARPPYPAQSGLYGRPTIVSNVLTFASIPNILSRGGAWHAALGTKQSRGT 321 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + G V +P VE ++ +++E+ GG+ G AV GG PA QM Sbjct: 322 MALQLGGRVKHPGLVEVPFGLSLHQVLEQFGGGMAPG-SRFKAVQVGGPLGSLFPASQMD 380 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 I YD + G+ LG ++V D TD++ F ESCG+CTPCR G+ Sbjct: 381 IPIC-YDAFAKAGAVLGHGGIVVYDHETDMVDLARHFMAFTADESCGKCTPCRIGSVRGR 439 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ER+ G ++ LL+++ ++ ++CALG A +P+ I++F Sbjct: 440 EILERIQSGSGTIEDLALLHDLGDTMKVASLCALGGRAPYPVLTAIEHF 488 >gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] Length = 626 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 234/398 (58%), Gaps = 6/398 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +S+ + ++ + V+K L + + +++E+ S LRGRGG GF TG KW + + Sbjct: 154 INAESIEEYLAADGYTAVEKALFDMTPEEVVDEISESYLRGRGGGGFQTGKKWCQVLQQ- 212 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +++ Y+V N DE +PG DR +M +PH +IEG +IA A A +IYVR E+ Sbjct: 213 AEKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGIATKASYGYIYVRAEYPLAV 272 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + LQ A+D+ GLLG N G+D D+ + GAGA++CGE +AL S+EG +G PR+K Sbjct: 273 KRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSALTASIEGNRGMPRVK 332 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PP GL+ PT +NNVE+ VP+I+ +G+ WY G E N GTK F+++G+V + Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNYGTKAFALTGNVKHTG 392 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEM 311 +E M E+I GG++ G AV GG S CL G+ + +D+D LK++ Sbjct: 393 LIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGENHLELPLDFDSLKKV 450 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ ++VM+ + +++ F ++ESCG+C PCREGT M+ ++ +V+G Sbjct: 451 GAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTKRMLEILTDIVEGRGT 510 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D+L E+S I +C LG +A+ P++ +K FR Sbjct: 511 LEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFR 548 >gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] Length = 626 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 234/398 (58%), Gaps = 6/398 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +S+ + ++ + V K L + + +++E+ S LRGRGG GF TG KWS + + Sbjct: 154 INAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGGGFQTGRKWSQVLQQ- 212 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +++ Y+V N DE +PG DR +M +PH +IEG +IA A A+ +IYVR E+ Sbjct: 213 AEKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKANYGYIYVRAEYPLAV 272 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + LQ A+D+ G LG N G+D D+ + GAGA++CGE +AL S+EG +G PR+K Sbjct: 273 KRLQMAIDQATKVGFLGKNILNSGFDFDLHISQGAGAFVCGEGSALTASIEGNRGMPRVK 332 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PP GL+ PT +NNVE+ VP+I+ +G+ WY G E N GTK F+++G+V + Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNYGTKAFALTGNVKHTG 392 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEM 311 +E M E+I GG++ G AV GG S CL G+ + +D+D LK++ Sbjct: 393 LIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGENHLELPLDFDSLKKV 450 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ ++VM+ + +++ F ++ESCG+C PCREGT M+ ++ +V+G Sbjct: 451 GAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTKRMLEILTDIVEGRGT 510 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D+L E+S I +C LG +A+ P++ +K FR Sbjct: 511 LEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFR 548 >gi|147669306|ref|YP_001214124.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|146270254|gb|ABQ17246.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] Length = 623 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 159/413 (38%), Positives = 240/413 (58%), Gaps = 5/413 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + S+ D ++ G + ++ K + + D I+ E+ SGLRGRGG GF TG KW Sbjct: 144 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGGGFPTGWKW 203 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+H A+IY+R Sbjct: 204 KSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYIYIR 262 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + A+ + GLLG N G+ + I ++ G GA++CGE TAL+ SLEGK Sbjct: 263 DEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTALMASLEGK 322 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++GTK+FS+ Sbjct: 323 VGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSKGTKIFSLV 382 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN +E M IT E++ GGI G A+ GG S CLP M +D+ Sbjct: 383 GKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLPVDF 440 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG M +++E++ Sbjct: 441 DELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQILEKI 500 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 KG ++ +I+ L ++S+ I+ ++CALG +A P+ IK FR E I Q Sbjct: 501 TKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 553 >gi|289432572|ref|YP_003462445.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|288946292|gb|ADC73989.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 623 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 159/413 (38%), Positives = 240/413 (58%), Gaps = 5/413 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + S+ D ++ G + ++ K + + D I+ E+ SGLRGRGG GF TG KW Sbjct: 144 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGGGFPTGWKW 203 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+H A+IY+R Sbjct: 204 KSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYIYIR 262 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + A+ + GLLG N G+ + I ++ G GA++CGE TAL+ SLEGK Sbjct: 263 DEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTALMASLEGK 322 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++GTK+FS+ Sbjct: 323 VGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSKGTKIFSLV 382 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN +E M IT E++ GGI G A+ GG S CLP M +D+ Sbjct: 383 GKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLPVDF 440 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG M +++E++ Sbjct: 441 DELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQILEKI 500 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 KG ++ +I+ L ++S+ I+ ++CALG +A P+ IK FR E I Q Sbjct: 501 TKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 553 >gi|73748525|ref|YP_307764.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] gi|73660241|emb|CAI82848.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] Length = 623 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 159/413 (38%), Positives = 240/413 (58%), Gaps = 5/413 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + S+ D ++ G + ++ K + + D I+ E+ SGLRGRGG GF TG KW Sbjct: 144 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGGGFPTGWKW 203 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+H A+IY+R Sbjct: 204 KSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYIYIR 262 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + A+ + GLLG N G+ + I ++ G GA++CGE TAL+ SLEGK Sbjct: 263 DEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTALMASLEGK 322 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++GTK+FS+ Sbjct: 323 VGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSKGTKIFSLV 382 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN +E M IT E++ GGI G A+ GG S CLP M +D+ Sbjct: 383 GKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLPVDF 440 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG M +++E++ Sbjct: 441 DELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQILEKI 500 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 KG ++ +I+ L ++S+ I+ ++CALG +A P+ IK FR E I Q Sbjct: 501 TKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 553 >gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus torques L2-14] Length = 622 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 155/411 (37%), Positives = 237/411 (57%), Gaps = 5/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + D+M+ G +++ +K + E + +I V +GLRGRGGAGF G KW Sbjct: 144 VLRNCGHIDAEHIEDAMAVGAYESFEKAVFEMTPEAVIKTVTDAGLRGRGGAGFPAGRKW 203 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + ++ Y+V N DE +PG DR +M +PH +IEG ++A++A+ A +IYVR Sbjct: 204 SQVASQ-PEKIRYVVCNGDEGDPGAFMDRSVMEGDPHRMIEGMMLAAYAVQAQEGYIYVR 262 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ LQ A+ + GLLG N G+ + ++ GAGA++CGE +AL S+EGK Sbjct: 263 AEYPLAVRRLQIAIAQAEEKGLLGDNILGTGFSFKLHINRGAGAFVCGEGSALTASIEGK 322 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR+KPP GL+ PT +NNVE+ A +P I++ GA WYS G + GTK F+++ Sbjct: 323 RGMPRVKPPRTVEQGLWEKPTVLNNVETYANIPMIIKNGADWYSRIGTPQSPGTKAFALT 382 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G+V +E M I+ E+I GGI+ AV GG S CL Q+ MD+ Sbjct: 383 GNVKNTGLIEVPMGISLREIIFDIGGGIKDD-KGFKAVQIGGPSGGCLVESQLDSK-MDF 440 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L ++G+ +G+ ++VMD T +++ F + ESCG+C PCREGT M+ ++ER+ Sbjct: 441 DSLSKIGAMIGSGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEILERI 500 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V G + ++D L E++ IE +C LG +A P+ I FR EE I Sbjct: 501 VAGNGEMSDLDELEELADMIENTALCGLGKSAPKPVVSTIHAFRKEYEEHI 551 >gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta subunit [Herbaspirillum seropedicae SmR1] gi|300073592|gb|ADJ62991.1| NAD-dependent formate dehydrogenase beta subunit protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 154/410 (37%), Positives = 229/410 (55%), Gaps = 5/410 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q+R+ F + + SL D ++ + + L K + I+ E+ ASGLRGRGGA Sbjct: 102 FLKNQERLTFARVGIIDPLSLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAA 161 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + S + Y+V NADE + GT DR IM +P TLIEG IA A+GA Sbjct: 162 FPTGIKWQTVLRAQSAQ-KYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGAT 220 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+ A+ +A G LG + G + V GAGAYICGEETA+ Sbjct: 221 EGYIYVRSEYPHSIATLEQAIAIAHAQGYLGDDILGSGKSFRLEVRKGAGAYICGEETAM 280 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NN+ S+A VP IL RGA +Y FG + G Sbjct: 281 LESLEGKRGVVRAKPPLPAIEGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHG 340 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T +L+E GG G + AV GG LP Q Sbjct: 341 TLPFQLAGNIRQGGLVEKAFGLTLRQLLEDFGGGSASGRP-IRAVQMGGPLGAYLPQSQF 399 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G ++ D S D+ + F ESCG+CTPCR G+ Sbjct: 400 D-TPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRG 458 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V+++++ + ++I LL + + ++CA+G +P+ + +F Sbjct: 459 VEVIDKIIANDDRAQQIHLLKSLCDTMVNGSLCAMGGMTPFPVLSALNHF 508 >gi|51246061|ref|YP_065945.1| NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea psychrophila LSv54] gi|50877098|emb|CAG36938.1| probable NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea psychrophila LSv54] Length = 550 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 148/389 (38%), Positives = 221/389 (56%), Gaps = 12/389 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+EV ASGLRGRGGAG+ TG+KWS + K + Y+V NADE +PG DR ++ +P Sbjct: 160 VIDEVTASGLRGRGGAGYPTGLKWSTVSKAI-NAVKYVVCNADEGDPGAFMDRSVLESDP 218 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159 H +IEG I ++A+GA IYVR E+ + LQ A+ + G+LG+ NS +D+ Sbjct: 219 HRVIEGMAIGAYAVGARQGIIYVRAEYPLAVKRLQKAITQAKRIGILGNGIFNSDFQFDI 278 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I GAGA++CGEETAL+ S+EG+ G+P +PP+PA GL CPT +NNVE+ A + Sbjct: 279 QI--RLGAGAFVCGEETALIASIEGRVGKPCPRPPYPAESGLKQCPTLINNVETFANIAP 336 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+R G W + G ++GTK+F+++G V +E +M T E++ GG Sbjct: 337 IIRNGGQWLASIGTSKSKGTKVFALAGKVQQKGLIEVAMGTTLGEIVFDI-GGGIADGGT 395 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+P Q +DY+ L ++GS +G+ +IVMD+ + ++ F Sbjct: 396 FKAVQTGGPSGGCIPK-QFLDMGVDYESLAKVGSIMGSGGMIVMDQGSCMVDVARFFVEF 454 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+C PCR GT M V+ ++ G + ++ LL E+ ++ +C LG A+ Sbjct: 455 CMSESCGKCVPCRVGTRQMHDVLGKIASGRGEASDLTLLEELCDLVKNTALCGLGQASVN 514 Query: 400 PIQGLIKNFR----PLIEERIDQYHRCNF 424 PI + F+ IEE+ H C Sbjct: 515 PILSTLCYFKDEYLAHIEEKRCIAHSCTL 543 >gi|229550120|ref|ZP_04438845.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200] gi|307277473|ref|ZP_07558565.1| HymB family protein [Enterococcus faecalis TX2134] gi|312952393|ref|ZP_07771268.1| HymB family protein [Enterococcus faecalis TX0102] gi|229304706|gb|EEN70702.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200] gi|306505738|gb|EFM74916.1| HymB family protein [Enterococcus faecalis TX2134] gi|310629777|gb|EFQ13060.1| HymB family protein [Enterococcus faecalis TX0102] gi|315153356|gb|EFT97372.1| HymB family protein [Enterococcus faecalis TX0031] gi|315155867|gb|EFT99883.1| HymB family protein [Enterococcus faecalis TX0043] gi|315157966|gb|EFU01983.1| HymB family protein [Enterococcus faecalis TX0312] Length = 432 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK GQPR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGQPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 625 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 152/405 (37%), Positives = 238/405 (58%), Gaps = 7/405 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + D + G + + K+L K + + +E+ SGLRGRGGAGF TG KW Sbjct: 147 VLKNCGKIDAEDIRDYIVCGGYKALAKVLMKMTPEEVCDEILKSGLRGRGGAGFPTGKKW 206 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + +D Y+V N DE +PG DR +M +PH ++EG +IA +A GA +IYVR Sbjct: 207 KQVLMQDAD-IKYVVCNGDEGDPGAFMDRSVMEGDPHQMLEGMIIAGYASGAREGYIYVR 265 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEG 184 GE+ + LQ A+ + + G LG N LG +D DI ++ GAGA++CGE +AL +S+EG Sbjct: 266 GEYPLAVKRLQVAIQQAHEWGFLGKNI-LGSNFDFDIHINKGAGAFVCGEGSALTQSIEG 324 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +G PR +PP GL+G PT +NNVE+ A VP I+ GA WY G + GTK+F++ Sbjct: 325 FRGMPRPRPPRTVEKGLFGKPTVLNNVETFANVPLIISNGADWYLSIGTPGSPGTKIFAL 384 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G++N +E M IT ++I GIR G AV GG S CL + + MD Sbjct: 385 TGNINNTGLIEVPMGITLRQIIFDIGAGIRNG-KKFKAVQIGGPSGGCLTEEHLDIS-MD 442 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L+ G+ +G+ ++V+D + +++ F + ESCG+C PCREGT M+ ++E+ Sbjct: 443 FDSLEAAGAMVGSGGLVVLDEDSCMVEVARFFMDFTQRESCGKCVPCREGTKRMLEILEK 502 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +V G A +++ LL E+++ ++ ++C LG A P+ +K F+ Sbjct: 503 IVSGNANIKDLQLLEELAEVVKIGSLCGLGKTAPNPVLTTMKYFK 547 >gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] Length = 574 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 161/421 (38%), Positives = 239/421 (56%), Gaps = 7/421 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +++ + + G + + K+L E D +I + +GLRGRGGAGF T Sbjct: 92 QHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGAGFPT 151 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +D+ Y+ NADE +PG DR ++ +PH L+E IA +AIG++ + Sbjct: 152 GLKWKLCKQNDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGSNQGY 210 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ E L+ A+ + LLG N G+D DI + GAGA++CGEETAL+ S Sbjct: 211 IYVRAEYPIAVERLKIAIQQAREMELLGKNIFGTGFDFDIDLRLGAGAFVCGEETALMTS 270 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G+PR +PPFPA GL+G P+ +NNVE+ A +P I+ G W++ G E ++GTK+ Sbjct: 271 IEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSKGTKV 330 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++ G +N VE M T +IE+ GGI G A GG S C+PA Sbjct: 331 FALGGKINNTGLVEVPMGTTLRTVIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHFDIP 389 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DYD L +GS +G+ +IVMD ++ F ESCG+CT CR GT M+ + Sbjct: 390 I-DYDNLISIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKRMVEI 448 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + ++ KG A ++D L E+ ++ ++C LG A P+ + FR E I + R Sbjct: 449 LTKITKGQAVMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIKE-KR 507 Query: 422 C 422 C Sbjct: 508 C 508 >gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 573 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 157/411 (38%), Positives = 244/411 (59%), Gaps = 8/411 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGF 60 + Q RI +N + + + + ++R + + K +LE + +++EVK SGLRGRGGAGF Sbjct: 89 SKQHRIVLSNCGYIDPEKIEEYIARDGYIALGKALLEMTPEEVLDEVKKSGLRGRGGAGF 148 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F K ++ Y++ NADE +PG DR + +PH++IEG + ++AIGA Sbjct: 149 PTGLKWEFARKAPGNK-KYVICNADEGDPGAFMDRSTLEGDPHSVIEGMALGAYAIGADE 207 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETAL 178 +IY R E+ + L+ A+ + GLLG N +G + +H GAGA++CGEETAL Sbjct: 208 GYIYCRAEYPLAIKRLKIAIAQAEEMGLLGDNI-MGTNFSFHLHLKEGAGAFVCGEETAL 266 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++G PR +PPFPA GL+G PT +NNVE+ A VP I+ GA W++ G E ++G Sbjct: 267 MASIEGRRGMPRPRPPFPAQHGLWGKPTNINNVETWANVPKIILNGADWFASMGTEKSKG 326 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G + +E M IT E+I + GGI G + AV GG S CL + Sbjct: 327 TKIFALTGKITNTGLIEVPMGITIKEIIYELGGGILNGKE-FKAVQIGGPSGGCLTKEHL 385 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I DY+ L G+ +G+ ++VMD T ++ F + ESCG+C PCREGT M Sbjct: 386 DLPI-DYESLTGAGAIMGSGGLVVMDEDTCMVDVARFFLEFTQRESCGKCVPCREGTKQM 444 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++E++ KG ++ L E++ ++ ++C LG A P+ I+ FR Sbjct: 445 LLMLEKICKGEGTLEDLSKLEELAYMVKETSLCGLGQTAPNPVITTIRYFR 495 >gi|255972897|ref|ZP_05423483.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T1] gi|257422721|ref|ZP_05599711.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis X98] gi|255963915|gb|EET96391.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T1] gi|257164545|gb|EEU94505.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis X98] Length = 417 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 16 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 74 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 75 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 134 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK GQPR+KPP A+VGLY PT Sbjct: 135 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGQPRVKPPHLADVGLYLQPT 194 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 195 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 254 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 255 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 313 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 314 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 373 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 374 VTRLSACGLGQSVANPMKSALALF 397 >gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] Length = 595 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 153/403 (37%), Positives = 237/403 (58%), Gaps = 5/403 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +++ + ++R + +++ L + + IINE+K +GLRGRGGAGF T MKW Sbjct: 117 VLRNCGVINPENIDEYIARDGYKALERALFDMKPEDIINELKTAGLRGRGGAGFPTWMKW 176 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 +F + D Y+V NADE +PG DR + +PH++IE IA A+GAH +IY+R Sbjct: 177 NFTKQAAGDV-KYIVCNADEGDPGAYMDRSTLEGDPHSIIEAMTIAGIAVGAHQGYIYIR 235 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + LQ A+++ GLLG + G+D DI + GAGA++CGEETALL S+EG+ Sbjct: 236 AEYPLAIKRLQIAMEQSRGYGLLGKDILGSGFDFDIEIRLGAGAFVCGEETALLASIEGE 295 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G P+ +PPFPA GL+GCPT +NNVE+ A VP I+ RG W++ G E+++GTK+F+++ Sbjct: 296 RGMPKPRPPFPATKGLWGCPTVINNVETWANVPVIISRGGDWFAKIGTEDSKGTKVFALT 355 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + VE M T E++ GGI G AV GG S + A + I DY Sbjct: 356 GKIRNSGLVEVPMGTTLREIVYDIGGGIPGN-KAFKAVQTGGPSGGVITADYLDTPI-DY 413 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 L+++GS +G+ +IVMD I+ F ESCG+C PCR G + +++R+ Sbjct: 414 SQLQKLGSIMGSGGMIVMDEDDCIVDVAKFYLGFTVEESCGKCAPCRVGGRTLYNILDRI 473 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 KG + +I+ L + K ++ ++C LG + P+ + F Sbjct: 474 TKGEGEMEDIERLKTIGKAMQKASLCGLGQTSPNPVMSTLHYF 516 >gi|288941582|ref|YP_003443822.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180] gi|288896954|gb|ADC62790.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180] Length = 538 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 153/421 (36%), Positives = 244/421 (57%), Gaps = 10/421 (2%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI GL SL ++ G + + + L E ++ EV SGLRGRGG Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K+ + Y+V NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 179 GYPTGLKWSTIAKMPPGQ-KYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEE 175 ++YVR E+ E L+ A+ + +G LG+ +++ ++V+I GAGA++CGEE Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEI--RLGAGAFVCGEE 295 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EG +GQPR +PP+PA GL+GCPT +NNVE+ A + I+R G W++ G E Sbjct: 296 TALMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEG 355 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+F+++G + +E M + ++IE GGI G AV GG S C+P Sbjct: 356 SKGTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIPDGR-AFKAVQTGGPSGGCIPE 414 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + + DYD LK +G+ +G+ +IVMD ++ ++ F ESCG+C PCR GT Sbjct: 415 AHLDIPV-DYDSLKTLGTIMGSGGLIVMDETSCMVDVARFFMEFCMSESCGKCIPCRAGT 473 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 M +++ L KG + ++ LL ++ + ++C LG A P+ ++ FR E + Sbjct: 474 WQMHALLDTLTKGRGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAK 533 Query: 416 I 416 + Sbjct: 534 L 534 >gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7] gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7] Length = 626 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 241/409 (58%), Gaps = 10/409 (2%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 Q RI GL + +++ ++ ++ + ++L + D +I+E+K SGLRGRGG GF T Sbjct: 144 QKRIALRNCGLINPEDITEYIAMNGYEALGRVLTQMTPDSVIDEIKKSGLRGRGGGGFPT 203 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW K SD +++ NADE +PG DR I+ +P++++E IA + IGA+ + Sbjct: 204 GIKWEMTKKSQSDT-KFIICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGANKGY 262 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 IY+R E+ L+ A+ + Y GLLG N S + +D+ +GAGA+ICGEETAL+ Sbjct: 263 IYIRAEYPLAINRLRIAIKQAYDLGLLGDNILGSSFSFHIDL--KYGAGAFICGEETALI 320 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+P +KPPFP+ +GL+ PT +NNVE++A + I+ G+ W+S G E ++GT Sbjct: 321 NSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIAPIILNGSQWFSSIGTEKSKGT 380 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+++G +N VE M IT E+I GGIRGG AV GG S C+PA + Sbjct: 381 KVFALAGKINNVGLVEVPMGITLREIIYDLGGGIRGG-KKFKAVQTGGPSGGCIPADHLD 439 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 I DY+ L E+GS +G+ +IVMD ++ F ESCG+CT CR G ++ Sbjct: 440 IPI-DYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGRCTACRIGNKRLL 498 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++E + G ++ L ++S I+ ++C LG + P+ +K F Sbjct: 499 EILENITNGKGTMEHLEGLKDLSYVIKDSSLCGLGQTSPNPVISTMKFF 547 >gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 598 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 156/405 (38%), Positives = 235/405 (58%), Gaps = 9/405 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +++ +++SR + + K L E R +I+E+K SGLRGRGG GF TG+KW Sbjct: 121 VLRNCGFMDPENIEEAVSRDAYLALYKSLKEMSRQDVIDEIKISGLRGRGGGGFPTGLKW 180 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F D+ Y+V NADE +PG DR ++ +PH+++E I +AIG+ IY+R Sbjct: 181 QFAFNKDVDK-KYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAICGYAIGSDEGLIYIR 239 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ L+ A+ + G+LG N G D + V +GAGA++CGEETAL+ S+EG Sbjct: 240 AEYPLAINRLKKAIKQANEYGVLGKNI-FGTDFNFKVRLKYGAGAFVCGEETALIHSMEG 298 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G+P LKPPFPA G + PT VNNVE++A +P I+ +GA W+ G E + GTK+F++ Sbjct: 299 KRGEPTLKPPFPAEAGYWKKPTNVNNVETLANIPVIINKGAQWFKSIGTEKSPGTKVFAL 358 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V +E M T E+I GGI AV GG S CL + I D Sbjct: 359 AGKVKNVGLIEVPMGTTLQEVIFDIGGGITKNR-KFKAVQTGGPSGGCLTEKDLNTPI-D 416 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVME 363 +D LKE GS +G+ +IVMD D + A+ + + F ESCG+CTPCR G + +++ Sbjct: 417 FDSLKEKGSMMGSGGMIVMDED-DCMVAVAKFYLGFTVEESCGKCTPCRIGNKRLYEILD 475 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ KG ++ LL ++SK I+ ++C LG + P+ + NF Sbjct: 476 KITKGKGSVNDLHLLKDLSKTIKRASLCGLGKTSPNPVLSTLNNF 520 >gi|221632800|ref|YP_002522022.1| NAD-dependent formate dehydrogenase subunit beta [Thermomicrobium roseum DSM 5159] gi|221156040|gb|ACM05167.1| NAD-dependent formate dehydrogenase beta subunit [Thermomicrobium roseum DSM 5159] Length = 574 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 147/408 (36%), Positives = 229/408 (56%), Gaps = 6/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ D ++ G + K L E + +I EVKAS LRGRGGAGF TG+KW + + R Sbjct: 155 ESIEDFIAIGGYRAFLKALFEMTPEEVIAEVKASNLRGRGGAGFPTGIKWESGRRTPA-R 213 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P Y+VVN+ E EP KDR ++ PH ++EG +I +A+ C + Y+ GE + Sbjct: 214 PKYVVVNSHEGEPNVFKDRRLLESNPHLVLEGLLIGCYALETPCGYNYIGGEHALALQRF 273 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q AV++ Y GLLG + G+ + + G GAYICGE +AL+ ++ G++GQPR KPP Sbjct: 274 QRAVEQAYELGLLGDDILGSGFSCHVRIRTGGGAYICGEGSALMYAIMGQRGQPRTKPPR 333 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 GL+ PT +NN E+ A +P I++ G SWY+ G + + GTKL ++ G V Y E Sbjct: 334 SVEEGLWRRPTVLNNTETFASIPAIIQNGGSWYASLGTKESTGTKLVTMQGPVKYLGVAE 393 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 ++ ELI GG+R G+ L + GG S L ++ I D++ L +G+ + Sbjct: 394 IEFGLSMRELIFDVFGGLREGY-RLKGIQTGGVSAGPLREDELDVPI-DFEALTPLGAMV 451 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ + D S + L F ++ESCG+CTPCR GT ++ +++R+ G + ++ Sbjct: 452 GSGGFVAFDESVCAVDFARYLVAFSRYESCGKCTPCRLGTPALVEILDRIRHGFGRPEDL 511 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 D++ SK+I ++C LG A P+ G+++ FR E I + RC Sbjct: 512 DIIQYASKHIIELSLCGLGQVAPMPLLGMLERFRDEFIEHITE-RRCR 558 >gi|257082642|ref|ZP_05577003.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis E1Sol] gi|257085351|ref|ZP_05579712.1| NADH dehydrogenase [Enterococcus faecalis Fly1] gi|256990672|gb|EEU77974.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis E1Sol] gi|256993381|gb|EEU80683.1| NADH dehydrogenase [Enterococcus faecalis Fly1] Length = 432 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YSEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|315160211|gb|EFU04228.1| HymB family protein [Enterococcus faecalis TX0645] Length = 432 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|315145702|gb|EFT89718.1| HymB family protein [Enterococcus faecalis TX2141] Length = 432 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQTFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|315147886|gb|EFT91902.1| HymB family protein [Enterococcus faecalis TX4244] gi|315150637|gb|EFT94653.1| HymB family protein [Enterococcus faecalis TX0012] Length = 432 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|70733835|ref|YP_257475.1| formate dehydrogenase subunit beta [Pseudomonas fluorescens Pf-5] gi|68348134|gb|AAY95740.1| formate dehydrogenase, beta subunit [Pseudomonas fluorescens Pf-5] Length = 519 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 159/415 (38%), Positives = 233/415 (56%), Gaps = 14/415 (3%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q R+ G+ + SL+D + G ++ + + + G + + V SGLRGRGGA F Sbjct: 98 LKNQQRLLFARAGITRPLSLADYRAHGGFEGLTRSIALGGEQTVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 G+KW + D P Y+V NADE + GT DR +M +P LIEG IA A+G Sbjct: 158 PAGIKW----RTVRDTPPQQKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMAIAGLAVG 213 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ + +L+ A+D +G LG+N+ G D+ V GAGAYICGEET Sbjct: 214 ASYGYIYVRSEYPQAVATLREALDIARDAGYLGANAGGSGQAFDMEVRVGAGAYICGEET 273 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL+SLEGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA +Y +G + Sbjct: 274 ALLDSLEGKRGIVRAKPPIPALQGLFGQPTLVHNVLTLASVPLILAKGAPFYRDYGMGRS 333 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GT F ++G+V + VE + +T EL+E + GG G L A GG +P Sbjct: 334 LGTMPFQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPS 392 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q +DY+ MG+ LG V+V D S D+ + F ESCG+CTPCR G+ Sbjct: 393 QFD-TPLDYEAFAAMGAMLGHGGVVVADDSLDLARMARFALQFCAEESCGKCTPCRIGST 451 Query: 357 WMMRVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V++RL+ Q R + +L ++ ++ ++CALG ++P+ +K+F Sbjct: 452 RGVEVIDRLLAAPDQGRRDEQALILKDLCDTLQYGSLCALGGMTSYPVASALKHF 506 >gi|298293800|ref|YP_003695739.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506] gi|296930311|gb|ADH91120.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506] Length = 519 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 157/416 (37%), Positives = 225/416 (54%), Gaps = 17/416 (4%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S +D + G + +++ L G II EVK SGLRGRGGAG Sbjct: 98 FLAKQTRLTFARCGIIDPASYADYRAHGGYKGLERALALGPAEIIEEVKKSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +KW + +DR Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 FPTAIKWKTVADAKADR-KYIVCNADEGDSGTFADRMIMEGDPFELIEGMTIAGIAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ +++ A++ A G+LG N + Y D+ V GAGAY+CGEETAL Sbjct: 217 KGFVYTRSEYPHAIWAMEKAIEVARAHGMLGVNIAGSQYSFDMEVRMGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L+SLEGK+G R KPP PA+ GL+ PT +NNV S+ VP IL G +Y+ FG +RG Sbjct: 277 LDSLEGKRGVVRAKPPLPAHKGLFQKPTVINNVLSLTAVPHILADGGEFYANFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPC---- 292 T I+G+V + E + IT ELI GG G A + P G+ VP Sbjct: 337 TMPIQIAGNVKFGGLFETAFGITLGELINDIGGGTASGRPVKAAQVGGPLGAYVPTWQFD 396 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 LP DY+ + +G ++V D +TD+ K F ESCG+CTPCR Sbjct: 397 LP--------FDYEAFAAKDALIGHGGIVVFDETTDLAKMARFAMEFCSVESCGKCTPCR 448 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G+ + +M+R++ G + + L ++ + ++ ++CALG +P+ + +F Sbjct: 449 IGSTRGVELMDRIMAGQRVEANLATLTDLCQTMKLGSLCALGGFTPYPVLSALNHF 504 >gi|217979755|ref|YP_002363902.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2] gi|217505131|gb|ACK52540.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2] Length = 516 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 218/391 (55%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + W + + +E G I EV SGLRGRGGAGF TG+KW + +DR Sbjct: 116 SLVDYAAHDGWKGLARAIEVGPAETIAEVTKSGLRGRGGAGFPTGVKWKTVADAPADR-R 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR + +P LIEG IA A+GA ++Y R E+ ++ Sbjct: 175 YIVCNADEGDSGTFADRMMFEGDPFALIEGMAIAGVAVGATKGYVYCRSEYPHAVKTFNE 234 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ A+G LG N G+ ++ + GAGAY+CGEETALL+SLEGK+G R KPP PA Sbjct: 235 AIVLARAAGYLGPNILGSGFAFELEMRVGAGAYVCGEETALLDSLEGKRGIVRAKPPLPA 294 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+G PT +NNV S+ VP IL +G +Y+ FG +RGT I+G+V + E + Sbjct: 295 HKGLFGRPTVINNVLSLVAVPHILAKGGEFYASFGMGRSRGTMPLQIAGNVRFGGLFETA 354 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T E++E GG R G + AV GG LP Q DY+ + + +G Sbjct: 355 FGLTLGEIVEDIGGGTRSGRP-IRAVQCGGPLGAYLPVSQFD-TPFDYEAFSKKDALIGH 412 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ + F ESCG+CTPCR G+ + ++R+ G+ + I L Sbjct: 413 GGIVVFDDTVDMAQMARFAMEFCAIESCGKCTPCRIGSTRGVETVDRIRAGVKVQENIAL 472 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ ++ ++CALG A +P+ +++F Sbjct: 473 LEDLCNTMKFGSLCALGGFAPYPVTSALRHF 503 >gi|330809409|ref|YP_004353871.1| formate dehydrogenase beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377517|gb|AEA68867.1| Formate dehydrogenase beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 519 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 160/412 (38%), Positives = 227/412 (55%), Gaps = 8/412 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ Q SL D +RG + + + ++ ++ V SGLRGRGGA F Sbjct: 98 LKSQQRLLFARAGITQPLSLDDYRARGGFLGLARSIQMDGADVVASVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRDAVGAQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGIAVGATM 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ +G LG+N S G DI V GAGAYICGEETALL Sbjct: 217 GYIYVRSEYPAAISTLNEALRIARDAGYLGANVSGSGRAFDIEVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA +Y FG + GT Sbjct: 277 ESLEGKRGTVRAKPPLPAIQGLFGLPTLVHNVVTLASVPIILEKGAQFYRDFGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + ++ EL+E + GG G L A GG +P Q Sbjct: 337 MPFQLAGNVRQGGLVERAFGLSLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPAQFD 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ MG+ LG V+V D S D+ + F ESCG+CTPCR G+ + Sbjct: 396 -TPLDYEAFAAMGAMLGHGGVVVADDSLDMAQMARFALQFCAEESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++RL+ A++ + LL ++ ++ ++CALG ++P+ +K F Sbjct: 455 EVVDRLIASTEAGARQEQALLLQDLCDTLQYGSLCALGGMTSYPVASALKYF 506 >gi|33600308|ref|NP_887868.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella bronchiseptica RB50] gi|33567907|emb|CAE31820.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella bronchiseptica RB50] Length = 526 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 231/410 (56%), Gaps = 6/410 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G +++ L + I++EV ASGLRGRGGA F Sbjct: 105 LKHQERLTFARVGVIDPLSLQDYAAHGGLAGLNRALAMSAEQIVDEVSASGLRGRGGAAF 164 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + R Y+V NADE + GT DR +M +P++LIEG IA A+GA Sbjct: 165 PTGIKWKTVLTTPAPR-KYIVCNADEGDSGTFADRLLMEGDPYSLIEGMTIAGLAVGATY 223 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A+ G LG + G D+ V GAGAYICGEET+LL Sbjct: 224 GYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHGSGQRFDLEVREGAGAYICGEETSLL 283 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VPTI+ RGA+ Y FG + GT Sbjct: 284 ESLEGKRGVVRAKPPLPAIAGLFGLPTVINNVISLATVPTIMARGAAHYRDFGVGRSHGT 343 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE++ +T +L+ GG G L AV GG LP Q Sbjct: 344 LPFQLAGNLKHGGLVEKAFGLTLRDLLYGFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 402 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D + D+ + F ESCG+CTPCR G+ + Sbjct: 403 -VPLDYEAYVQISAMVGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461 Query: 360 RVMERLVKGIAQKRE-IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++++V G Q+ + + LL ++ + ++CALG A +P+ + +F Sbjct: 462 ETIDKIVAGGPQREQRVHLLRDLCDTMLAGSLCALGGMAPYPVLSALNHF 511 >gi|146277732|ref|YP_001167891.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] gi|145555973|gb|ABP70586.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] Length = 416 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 155/409 (37%), Positives = 223/409 (54%), Gaps = 15/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75 +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ + D Sbjct: 18 TLAEWRAEGGYEAVERARTMTPSEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGD 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ + Sbjct: 78 GPSYLIVNGDEMEPGAFKDRFLLEAMPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR +PPF Sbjct: 138 VEHAIHEARTAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P E Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T ELIE+ GG+ G L A PGG + Q+ +D+ + GS Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDQL-DLPLDFGHVARAGSMF 307 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +IV+D S + + R FY ESCG CTPCREG + ++++R +G ++ ++ Sbjct: 308 GTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAEGRGRRADL 367 Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +LL + GR+ C L A P+ ++ F E R+ + R Sbjct: 368 ELLQMTAAEAGPRGRSFCDLMGGAMAPLASGLRMFAAEFEARLAEGERA 416 >gi|257415999|ref|ZP_05592993.1| NADH dehydrogenase [Enterococcus faecalis AR01/DG] gi|257157827|gb|EEU87787.1| NADH dehydrogenase [Enterococcus faecalis ARO1/DG] Length = 432 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YSEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT + ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRTLELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 635 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 159/421 (37%), Positives = 236/421 (56%), Gaps = 7/421 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +S+ + ++ + + K I E +I+ VKASGLRGRGG GF T Sbjct: 147 QHRIALKNCGVIDPESIDEYLALDGYKALQKAITEMAPQDVIDVVKASGLRGRGGGGFPT 206 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K +D+ Y+V NADE +PG DR I+ +P +++E IA +AIG+ F Sbjct: 207 GMKWEFTAKAANDK-KYVVCNADEGDPGAFMDRSILEGDPQSVLEAMAIAGYAIGSDKGF 265 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ L+ A+ + GLLG ++ DI + GAGA++CGEETAL+ S Sbjct: 266 IYIRAEYPMAVRRLEKAIAQAKEYGLLGQRIMGTEFNFDIEIRLGAGAFVCGEETALIRS 325 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G KPPFPAN GL+G PT +NNVE+ A V I+ +GA W+ G E + GTK+ Sbjct: 326 IEGERGMSVQKPPFPANSGLWGKPTLINNVETFANVAQIILKGAEWFKSVGSEKSAGTKV 385 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++ G + VE M T E+I GGI AV GG S C+P + Sbjct: 386 FALGGKITNTGLVEIPMGTTLKEVIYDIGGGIPHN-KKFKAVQTGGPSGGCIPYTHIDSP 444 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DYD L +GS +G+ +IVMD ++ F HESCG+C+PCR GT ++ + Sbjct: 445 I-DYDTLTTIGSMMGSGGMIVMDEDNCMVDVAKFFLEFVSHESCGKCSPCRIGTKRLLEI 503 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + ++ +G +++ L ++S +I+ +C LG A P+ +K F+ E + + R Sbjct: 504 LTKITEGKGTMEDLENLEKLSHDIKATALCGLGQTAPNPVLSTLKYFKHEYEAHVRE-DR 562 Query: 422 C 422 C Sbjct: 563 C 563 >gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 527 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 157/417 (37%), Positives = 235/417 (56%), Gaps = 9/417 (2%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI Y + + + D ++ G + ++ K+L E + + E+K S LRGRGGAGF T Sbjct: 46 QTRIALKNYDIINPEKIEDYIAFGGYYSLAKVLQENDKTKVCEEIKKSNLRGRGGAGFPT 105 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW K +D+ Y++ NADE +PG DR I+ +PH+++EG IA F GA F Sbjct: 106 GKKWEAAMKQNTDQ-KYIICNADEGDPGAYMDRSILEGDPHSVLEGMAIAGFVTGADSGF 164 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + +L A+ + + LLG N G++ ++ + GAGA++CGE TAL+ES Sbjct: 165 IYVRAEYPKAVATLITAIYQAKDNNLLGDNILGSGFNFNVELRLGAGAFVCGEGTALMES 224 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR K GL+G PT +NNVE+ A V I+ +GA W+ G E + GTK+ Sbjct: 225 IEGKRGMPRNKEFRTTVKGLWGKPTVINNVETYANVAQIIEKGADWFKSIGTEKSSGTKV 284 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++ G +N P VE M +++ GG G AV GG S C+P + Sbjct: 285 FALVGKINNPGLVEVPMGTKISDVVFDI-GGGIPGGKKAKAVQTGGPSGGCIPT-DLFDT 342 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D++ LKE+GS +G+ ++VMD ++ F ESCG+CTPCR G ++ + Sbjct: 343 GLDFESLKEIGSIMGSGGMVVMDEDDCMVDISRFFLEFSVDESCGKCTPCRIGNKRLLEM 402 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++ V G A +ID L E+S I ++C LG A+ PI +K FR +E ID Sbjct: 403 LDKFVSGNAVMSDIDKLEELSNMICDTSLCGLGQASPNPILSTLKYFR---QEYIDH 456 >gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 157/419 (37%), Positives = 245/419 (58%), Gaps = 7/419 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI GL + ++ + ++R + + K L E + II+EVK S LRGRGG GF T Sbjct: 118 QQRIALRNCGLIEPHNIREYIARDGYQALGKALTEMTPEEIIDEVKTSKLRGRGGGGFPT 177 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + K P +++ NADE +PG DR I+ +PH++IEG I ++ IGA+ + Sbjct: 178 GVKWE-LTKSAEGSPKFIICNADEGDPGAFMDRSIVEGDPHSVIEGLAIGAYVIGANQGY 236 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 +YVR E+ + L+ A++ G+LG + G+D ++ + GAGA++CGEETAL+ S Sbjct: 237 VYVRAEYPLAVDRLEKAIESARELGVLGEDIFGSGFDFNVEIRVGAGAFVCGEETALIHS 296 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 ++G +G P KPP+PAN GL+ PT +NNVE++A +P I+ G W+S G E + GTK+ Sbjct: 297 VQGDRGDPHGKPPYPANDGLWDQPTVINNVETLANIPQIILNGGDWFSHIGTEESTGTKV 356 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G ++ +E M T E+I GGI + A GG S CLP ++ + Sbjct: 357 FALAGDIHNTGLIEVPMGTTLREVIFNLGGGIPDDKE-FKAAQTGGPSGGCLPREKLDIS 415 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD L E+GS +G+ +IVMD T ++ F + E+CG+CTP R GT ++ + Sbjct: 416 -MDYDSLLEVGSMMGSGGLIVMDEDTCMVDVARFYLDFTQDEACGKCTPGRVGTKRLLEM 474 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQY 419 + R+V G A++ +D L + I+ +C LG +A PI ++ FR E + D+Y Sbjct: 475 LNRIVSGEAEENILDKLEALCHEIKKTALCGLGQSAPNPILSTLEYFRDEYEAHVFDKY 533 >gi|256618969|ref|ZP_05475815.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200] gi|307288115|ref|ZP_07568125.1| HymB family protein [Enterococcus faecalis TX0109] gi|256598496|gb|EEU17672.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200] gi|306500851|gb|EFM70169.1| HymB family protein [Enterococcus faecalis TX0109] gi|315164269|gb|EFU08286.1| HymB family protein [Enterococcus faecalis TX1302] gi|327535030|gb|AEA93864.1| NADH-quinone oxidoreductase subunit F [Enterococcus faecalis OG1RF] Length = 432 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|312900655|ref|ZP_07759952.1| HymB family protein [Enterococcus faecalis TX0470] gi|311292136|gb|EFQ70692.1| HymB family protein [Enterococcus faecalis TX0470] Length = 432 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNVRQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLLRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|91975810|ref|YP_568469.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] gi|91682266|gb|ABE38568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] Length = 428 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/356 (42%), Positives = 207/356 (58%), Gaps = 11/356 (3%) Query: 60 FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 F T KW FM + +D+ YL VN DE+EPG+ KDR +M PH LIEG IA++A Sbjct: 60 FPTANKWRFM-RAGADKAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118 Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174 GA I VR E+ +L A+ E +G LG + G+D+ + VH AG YI GE Sbjct: 119 TGATEVIILVRDEYRAAAAALTRAITEAEQAGWLGRDILGSGFDLTMRVHTSAGRYIVGE 178 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETAL+ +LEG++ PR +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY G R Sbjct: 179 ETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSAVPSIVENGADWYRGLSRS 238 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 + GTKL+ +SG V P +E M T ELIE CGGIR G L A PGG + L Sbjct: 239 DEGGTKLYGVSGCVARPQLIEAPMGTTGRELIEI-CGGIRNG-RALFAFQPGGGATAFLE 296 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 ++ +D+ K+ GS LGT A+IV+D + AI R FY ESCG CTPCR+G Sbjct: 297 TAEL-DVPLDFTHTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSK--NIEGRTICALGDAAAWPIQGLIKNF 408 W+ ++++ L G K ++DLL+ + GR+ C L A P++ ++ F Sbjct: 356 LPWVAKLLDTLEAGRGAKADLDLLHSHVQLSAPSGRSYCDLNTGALTPLKSGLERF 411 >gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] Length = 571 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 147/350 (42%), Positives = 210/350 (60%), Gaps = 17/350 (4%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW + P Y V+NADE EPGT KDR + EPH +EG +++++A+ A Sbjct: 227 FPTYRKWQAV--RAEPGPRYAVINADEGEPGTFKDRYFLEREPHVFLEGALVSAWAVEAQ 284 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L+ AV E A+G++ + G+ +I+ GAGAYICGEE+AL+ Sbjct: 285 ALYIYLRDEYPGLHGVLKNAVAELEAAGIV----EPGF---VILRRGAGAYICGEESALI 337 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PR +PPF A GL+G PT VNNVE++ +P I +GA W++ GR +G Sbjct: 338 ESLEGKPGKPRHRPPFVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWFASQGRHGRKGL 397 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + FS+SG V P IT ELI+++CGG+ G LLA +PGG+S LPA + Sbjct: 398 RSFSVSGRVATPGVHLAPAGITLSELIDEYCGGMAEG-HRLLAYLPGGASGGILPASKA- 455 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+E G +G+AAVIV+ D+ A L F+ ESCGQCTPCR GT M+ Sbjct: 456 DIPLDFDTLQEHGCFIGSAAVIVLSDQDDLQAAASNLLGFFADESCGQCTPCRVGTEKML 515 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ER + D L +++ + +IC LG AA P+ L+++FR Sbjct: 516 TLLER------STWDEDTLKQLAGVMADASICGLGQAAPNPVLSLLRDFR 559 >gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] Length = 640 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 150/408 (36%), Positives = 228/408 (55%), Gaps = 5/408 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ D + RG + + K L + + ++ EV + LRGRGG GF G KW + Sbjct: 146 INPQNIEDYIQRGGYSALVKALFQMTPESVLEEVDTANLRGRGGDGFPAGKKWR-TTRDA 204 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y++VN DE +PG DR IM PH ++EG I +FA+GA +IYVR E+ Sbjct: 205 PDPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAVGAKEGYIYVRAEYPLAV 264 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E+L AA+ + GLLG N G+D + VH GAGA++ GE +AL+ ++EG+ G+PR K Sbjct: 265 ENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++GTK+F++ G VN Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSKGTKIFALVGKVNNTG 384 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE M T ++I K GG+R G + AV GG S C+P + + DYD L ++G Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDVLSKLG 442 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ +I+MD T ++ F ESCG+C PCREG ++ ++ R+ +G Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVEILTRITEGKGTM 502 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++D L ++S + +CALG A P+ +K FR + I H Sbjct: 503 ADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550 >gi|297190828|ref|ZP_06908226.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] gi|297150631|gb|EFH30698.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] Length = 362 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 152/358 (42%), Positives = 205/358 (57%), Gaps = 21/358 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I EV +GL GRGGA F TG KW +D PHYLV NADESEPGT KDR +M +P Sbjct: 8 VIREVTDAGLLGRGGAAFPTGRKWQATASQ-ADHPHYLVCNADESEPGTFKDRVLMEGDP 66 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161 LIE IA +AIGAH F+Y+RGE+ R L+ A+ A GLLG + GY DI Sbjct: 67 FALIEAMTIAGYAIGAHQGFLYLRGEYPRALGLLENAIASARARGLLGEDVLGQGYAFDI 126 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGAYICGEETA+ S+EG +G+PR KPPFP GL+G PT VNNVE++ V IL Sbjct: 127 EIRRGAGAYICGEETAIFNSIEGYRGEPRTKPPFPVEKGLFGKPTAVNNVETLVNVLPIL 186 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GR TKLF +SG+V P E +T ELIE + G D + Sbjct: 187 N---------GRTEE--TKLFCLSGNVARPGIYELPFGVTLRELIE-----LAGPPDRMR 230 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV+ GG++ + ++ + ++G + G+ LG+ V+V+D + ++ + + R++ F++ Sbjct: 231 AVLLGGAAGSFVRPDELD-IPLTFEGTRAAGTTLGSGVVLVLDDTVELPRVLLRIAEFFR 289 Query: 342 HESCGQCTPCREGTGWMMRVMERLV--KGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 ESCGQC PCR GT + R+ G +I LL EV + +IC LG A Sbjct: 290 DESCGQCVPCRVGTVRQEEALHRIKDRTGADAAGDIALLREVGAAMRDASICGLGQTA 347 >gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Pelobacter carbinolicus DSM 2380] Length = 486 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/412 (36%), Positives = 232/412 (56%), Gaps = 8/412 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAG 59 + Q RI T G + +S+ ++ G + + K L K + +I +K SGLRGRGGAG Sbjct: 1 MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSKMKPADVIELMKNSGLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F K SD H +V NADE +PG DR ++ +PH+++E I ++AIG + Sbjct: 61 FPTGVKWGFAAKYESDIKH-VVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+++ G+LG N +G D D+ + +GAGA++CGEETA Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNI-MGTDFCFDLELKYGAGAFVCGEETA 178 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P KPPFPA G + PT VNNVE++A +P I+ +GA W++ G E ++ Sbjct: 179 LINSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSK 238 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F I G + +E M T E+I GGI GG + AV GG S L Sbjct: 239 GTKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKD 297 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DY+ L S +G+ +IVMD ++ F E+CG+CTPCR G+ Sbjct: 298 LDAPI-DYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKR 356 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +++++ G + +++ L +S NI+ +C LG P+ ++ F Sbjct: 357 IYELLDKITIGQGTEEDLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFE 408 >gi|315166637|gb|EFU10654.1| HymB family protein [Enterococcus faecalis TX1341] Length = 432 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNVRQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] Length = 601 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/424 (36%), Positives = 231/424 (54%), Gaps = 12/424 (2%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFST 62 Q++I N+ + + D + RG + + K++ + + + ++ EV SGLRGRGGAGF T Sbjct: 118 QNKIALRNVGEIDPTVIEDYIERGGYKALKKVISQMKPEDVLKEVGDSGLRGRGGAGFPT 177 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 KW ++ P Y+V N DE +PG DR IM +PH++IEG I ++A+G F Sbjct: 178 SRKWQTAAEI-DTTPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMTICAYAVGGTLGF 236 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 Y+R E+ E++Q A++ G LG N + +D+ I+ G GA++CGE TAL+ Sbjct: 237 AYIRDEYGLAVENMQKAINVARERGFLGENILGTNFSFDIQIV--RGGGAFVCGESTALM 294 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRG 238 S+EG G+PR K GL+G PT +NNVE+ A +P IL +G WY G E ++G Sbjct: 295 SSIEGMVGEPRAKYIHTTEKGLWGQPTVLNNVETWANIPIILDKGGQWYHSIGTMEKSKG 354 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+FS+ G V VE M T E+I GG+ AV GG S CLP + Sbjct: 355 TKVFSLVGKVKNTGLVEVPMGTTLREIIFNIGGGVLNDR-KFKAVQIGGPSGGCLPEEYL 413 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + DYD L + S +G+ +IVMD T I+ F ESCG+C PCREG M Sbjct: 414 DLPV-DYDTLTKADSMMGSGGMIVMDDRTCIVDVTRYYLGFLAEESCGKCVPCREGVKRM 472 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +M + G ++ +++ L E++ + +C+LG +AA P+ I+ FR EE I + Sbjct: 473 LEIMTDICNGEGREGDLEELLEIASMSKEAALCSLGKSAANPVLASIRYFRDEFEEHI-R 531 Query: 419 YHRC 422 RC Sbjct: 532 NKRC 535 >gi|160936612|ref|ZP_02083979.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC BAA-613] gi|158440403|gb|EDP18148.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC BAA-613] Length = 447 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 145/403 (35%), Positives = 228/403 (56%), Gaps = 7/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ + + G + + K L ++ I+ E+ S L+GRGGAG+ G KW + ++ D Sbjct: 25 SVPEFEALGGFSGIRKALSMEKEEILEEISRSNLKGRGGAGYPAGRKWKSLYRIEGD-TK 83 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE EPGT KDR ++ P ++IEG +IA + G+ +IY+RGE+ R ++ + Sbjct: 84 YIVCNADEGEPGTFKDRVLLEETPLSVIEGMLIAGYVFGSKQGYIYIRGEYRRIQKIFET 143 Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++ +G LG + G+D I V G GAY+CGE +A+L S+EGK G+PR+KPP Sbjct: 144 ALENAEDAGYLGKDILGVPGFDYSITVVSGGGAYVCGENSAMLNSIEGKTGRPRIKPPHL 203 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGLYG PT VNNVE++ VP IL G+ + +G + GTKL SISGHV E Sbjct: 204 AEVGLYGKPTLVNNVETLCCVPIILEEGSQKFLSYGTTESGGTKLVSISGHVKNRGVFEV 263 Query: 257 SMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 + I+ +LI EK+ GG G + G S P + Y+ L G Sbjct: 264 GLGISLRQLIMDEKYGGGTSTGRKPGFFHMGGQSGPIGFP--EQLDTPYTYETLAPKGLA 321 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ A++V+D S I++ I ++ F+ HESCG+CTPCR GT ++ ++ V+G A+ + Sbjct: 322 VGSGAIVVLDDSVCIVEYIQKVFEFFVHESCGKCTPCRLGTTRILELLTDFVEGRAKDGD 381 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ L +++ + + C LG + + +++ R E I+ Sbjct: 382 VERLEYMARQVSQLSACGLGQSVNVALMSALRHRRGDFEAHIN 424 >gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 677 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 238/410 (58%), Gaps = 7/410 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 Q + N + + +++ ++R + + IL + R +I++V S LRGRGG GF Sbjct: 140 NQQRVVLRNCGVINPEDINEYIARDGYAALADILNHRSRAEVIDQVINSVLRGRGGGGFP 199 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW + P Y+V NADE +PG DR I+ +PH ++EG I ++A+GA Sbjct: 200 TGKKWQIAARQ-EVNPKYIVCNADEGDPGAFMDRSILEGDPHAILEGMSIGAYAVGAEQG 258 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ + L+ A+ + GLLG N G++ DI + GAGA++CGEETALL Sbjct: 259 YIYVRAEYPIAVDRLEIAIGQARQMGLLGKNILGSGFNFDIDIKLGAGAFVCGEETALLH 318 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S G +G+PR +PP+PA GL+G PT +NNVE+ A V + ++G W+ G G + GTK Sbjct: 319 SCMGARGEPRPRPPYPAQEGLWGKPTVINNVETFANVTVVFQKGWQWFVGRGTAKSSGTK 378 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS++G + +E M T +I GGI G AV GG S C+P + Sbjct: 379 VFSLAGKIKNTGLIEVPMGSTLRSIIFDTGGGIPDGH-RYKAVQTGGPSGGCIPE-EYLD 436 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359 ++DYD L ++GS +G+ +IVMD D + I R V F + ESCG+CTPCR GT ++ Sbjct: 437 ILVDYDSLAKVGSIMGSGGLIVMD-DRDCMVDIARFYVEFAQDESCGRCTPCRVGTKRLL 495 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +++R+ KG + ++ LL E+S++I+ ++C LG A P+ ++ FR Sbjct: 496 EILQRITKGEGEMEDLRLLEELSQDIKVASLCGLGQTAPNPVLSTLRFFR 545 >gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] Length = 631 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 153/383 (39%), Positives = 223/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GFSTG KWSF SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ +G WY G E + GTK+F+++G +N VE M T E+I GI+ G Sbjct: 367 IINKGGDWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGEGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTAIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F E +++ RC Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566 >gi|33519940|ref|NP_878772.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus] gi|33504286|emb|CAD83178.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus] Length = 445 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 142/353 (40%), Positives = 205/353 (58%), Gaps = 6/353 (1%) Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWS M + S YLV NADE EPGT KDR +M PH L+EG +IA +A+G A+I+ Sbjct: 74 KWSMMTQNKSGLVRYLVCNADEMEPGTYKDRFLMERLPHLLLEGILIAGYALGVSVAYIF 133 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 +R E++ E L+ A++E ++GLLG N +++++ +H GAG YICGEETALL SLE Sbjct: 134 LRYEYMTAAEYLRIAINEIRSAGLLGKNILNTEFNLELFIHTGAGRYICGEETALLSSLE 193 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKL 241 G + PR KPPFPA GL+G PT VNNVE++ +P I+ G SWY + N+ GTKL Sbjct: 194 GNRAIPRAKPPFPAQSGLWGKPTCVNNVETLCNIPGIIEHGVSWYKNISVKYSNDSGTKL 253 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 SG V P E IT E++E + G+ G+ L A PGG+S L + Sbjct: 254 MGFSGKVKNPGIWELPFGITAREILEDYAYGMCNGF-YLKAWQPGGASTDFLIENHLDTP 312 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MD+D +K +GS GT + +D + +++ + L F+ ESCG CTPCR+G W++++ Sbjct: 313 -MDFDNIKSVGSRFGTGIAVAVDNTVNMVGLVRNLEEFFSRESCGWCTPCRDGLPWVVKL 371 Query: 362 MERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 + L K ++ +L + + G+T CA A P++ +K FR E Sbjct: 372 LIALEKNSGYPEDLIMLEHLCNLLGPGKTFCAHAPGAMEPLKSALKYFRDEFE 424 >gi|227518655|ref|ZP_03948704.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104] gi|229545926|ref|ZP_04434651.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322] gi|256853026|ref|ZP_05558396.1| NADH dehydrogenase [Enterococcus faecalis T8] gi|256965224|ref|ZP_05569395.1| NADH dehydrogenase [Enterococcus faecalis HIP11704] gi|257419201|ref|ZP_05596195.1| NADH dehydrogenase [Enterococcus faecalis T11] gi|307273327|ref|ZP_07554572.1| HymB family protein [Enterococcus faecalis TX0855] gi|307291376|ref|ZP_07571260.1| HymB family protein [Enterococcus faecalis TX0411] gi|227073912|gb|EEI11875.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104] gi|229308994|gb|EEN74981.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322] gi|256711485|gb|EEU26523.1| NADH dehydrogenase [Enterococcus faecalis T8] gi|256955720|gb|EEU72352.1| NADH dehydrogenase [Enterococcus faecalis HIP11704] gi|257161029|gb|EEU90989.1| NADH dehydrogenase [Enterococcus faecalis T11] gi|306497607|gb|EFM67140.1| HymB family protein [Enterococcus faecalis TX0411] gi|306509854|gb|EFM78879.1| HymB family protein [Enterococcus faecalis TX0855] gi|315029989|gb|EFT41921.1| HymB family protein [Enterococcus faecalis TX4000] gi|315575555|gb|EFU87746.1| HymB family protein [Enterococcus faecalis TX0309B] gi|315580003|gb|EFU92194.1| HymB family protein [Enterococcus faecalis TX0309A] Length = 432 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] Length = 599 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 154/416 (37%), Positives = 233/416 (56%), Gaps = 5/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N+ + ++ D ++RG + + K L D II EV+ASG+RGRGGAGF TG KW Sbjct: 117 VLHNIGEIDPTNIDDYIARGGYSALKKALSMDADRIIGEVEASGIRGRGGAGFPTGTKWR 176 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 K SD Y+ N DE +PG DR I+ +PH++IEG +I + AI A ++Y+R Sbjct: 177 QALKYDSDV-KYVACNGDEGDPGAFMDRSILEGDPHSVIEGMIICACAIDAQEGYMYIRD 235 Query: 128 EFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E+ + A+ + G LG S G DI + G GA++CGE TAL+ S+EG+ Sbjct: 236 EYGLAVENCKIALQQAREKGFLGDSVMGTGKSFDIQIVRGGGAFVCGESTALMASVEGRV 295 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR K GL+ PT +NNVE++A +P I++ G + + G E + GTK+F++ G Sbjct: 296 GEPRAKYIRSVQRGLWNKPTVLNNVETLANIPRIIQDGGAKFKELGTEKSSGTKVFALVG 355 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V VE M T LI GGI G AV GG S C+PA ++ MD+D Sbjct: 356 KVKRTGLVEIPMGSTLRHLIYDIGGGIPGDRP-FKAVQTGGPSGGCIPA-ELLDLPMDFD 413 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L G+ +G+ VIVMD + +++ F ESCG+CTPCREG ++ ++ + Sbjct: 414 TLTSYGAMMGSGGVIVMDDRSCMVEVARYYIEFLCDESCGKCTPCREGLRHLLTILTDIC 473 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +G Q+ +I+L+ ++ ++ ++C+LG +AA P+ IK FR E I + RC Sbjct: 474 EGRGQEGDIELMEKICHTMQDASLCSLGKSAANPVLTTIKYFRDEYEAHIHE-KRC 528 >gi|158425077|ref|YP_001526369.1| putative NAD-dependent formate dehydrogenase beta subunit protein [Azorhizobium caulinodans ORS 571] gi|158331966|dbj|BAF89451.1| putative NAD-dependent formate dehydrogenase beta subunit protein [Azorhizobium caulinodans ORS 571] Length = 519 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 144/391 (36%), Positives = 219/391 (56%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL + + G + + K +E G + +V SGLRGRGGAGF TG+KW + +D+ Sbjct: 117 SLEEYKAHGGYKGLAKAIEIGPSATVEQVFESGLRGRGGAGFPTGIKWRTVAAAPADQ-R 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A+GA F+Y R E+ + ++ Sbjct: 176 YIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATKGFVYCRSEYPLSLQVMEK 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +GLLG N + YD D+ + GAGAY+CGEETALL+SLEGK+G R KPP PA Sbjct: 236 AIAIARTAGLLGKNVAGSQYDFDLEMRMGAGAYVCGEETALLDSLEGKRGVVRAKPPLPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+G PT +NN+ S+A VP IL +G ++Y FG +RGT ++G++ + E + Sbjct: 296 HKGLFGKPTVINNLISLATVPVILEKGGAFYRDFGMGRSRGTMPIQLAGNIKFGGIFETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 I EL+ GG G + AV GG LP Q DY+ + +G Sbjct: 356 FGIPLGELVYDIGGGTASGRP-VRAVQAGGPLGAYLPVHQFD-TPFDYEAFAAKDALIGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ F HESCG+CTPCR G+ + +++++ G ++ + + Sbjct: 414 GGIVVFDDTVDMAHMARFAMEFCSHESCGKCTPCRIGSTRGVETLDKIIAGNRREANLAV 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++ ++CALG +P+ + +F Sbjct: 474 LTDLCQTMKLGSLCALGGFTPYPVLSALTHF 504 >gi|311697064|gb|ADP99937.1| NADH dehydrogenase (quinone) [marine bacterium HP15] Length = 512 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 150/391 (38%), Positives = 222/391 (56%), Gaps = 3/391 (0%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S++D S G + +++ + I++EVKASGLRGRGGA F TG+KW + + Sbjct: 118 SIADYRSHGGFVGLEQAVSLSPQAIVDEVKASGLRGRGGAAFPTGIKWQTVHDEPWQQQK 177 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR M +P+ LIEG IA A+GA FIY+R E+ L Sbjct: 178 YIVCNADEGDSGTFADRLAMECDPYMLIEGMTIAGLAVGATQGFIYLRSEYPVAHRILNE 237 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ A G LG + + G ++ V AGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 238 AISRAEAEGYLGRDVRGSGRAFNLEVRLAAGAYICGEETSLLESLEGKRGLVRAKPPLPA 297 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV S A VP IL +G Y+ +G +RGT ++G++ +E + Sbjct: 298 IKGLFGQPTVVNNVLSFAAVPFILAKGGQTYAHYGMGKSRGTLPIQLAGNIRRGGLIELA 357 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ E++E GG G + AV GG + +P Q MDY+ ++G+G+G Sbjct: 358 FGVSLREILEDFGGGTFTG-RPMKAVQVGGPLMAYMPQNQWD-TPMDYEAFAQLGAGIGH 415 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 V+V D + D+ + F ESCG+CTPCR G+ + V++R+ G + + + L Sbjct: 416 GGVVVFDDTVDMGEQARFAMEFCTVESCGKCTPCRIGSVRGLEVIDRIRAGESPEANLVL 475 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L E+ + + ++CA+G +P+Q ++K F Sbjct: 476 LEELCETMVDGSLCAMGGMTPFPVQSVMKYF 506 >gi|187477322|ref|YP_785346.1| NAD-dependent formate dehydrogenase subunit beta [Bordetella avium 197N] gi|115421908|emb|CAJ48428.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella avium 197N] Length = 518 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 159/410 (38%), Positives = 228/410 (55%), Gaps = 6/410 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + S+ D + G +++ L + II EV ASGLRGRGGA F Sbjct: 101 LRHQERLTFVRVGVIDPLSIQDYAAHGGLAGLERALNLTPEQIIEEVAASGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVHSAPSAT-KYIVCNADEGDSGTFADRLLMEGDPYALIEGMTIAGLAVGARY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ G LG + G D+ V GAGAYICGEETALL Sbjct: 220 GYIYVRSEYPHAIATLRAAIGRAREVGWLGEDIHGSGRCFDLEVREGAGAYICGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VPTIL RGA++Y +G + GT Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGQPTVINNVISLATVPTILARGAAFYRDYGVGRSHGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ ++ EL+ GG G L A GG LP Q Sbjct: 340 LPFQLAGNIRQGGLVEKAFGLSLRELLYDFGGGSASG-RPLRAAQVGGPLGAYLPESQWD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G V+ D S D+ + F ESCG+CTPCR G+ + Sbjct: 399 -VPLDYEAYIAISAMVGHGGVVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++R++ G Q+ ++ LL ++ + G ++CALG A +P+ + +F Sbjct: 458 ETLDRIMAGGEQREAQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHF 507 >gi|29375956|ref|NP_815110.1| NAD-dependent formate dehydrogenase, beta subunit, putative [Enterococcus faecalis V583] gi|256762396|ref|ZP_05502976.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T3] gi|29343418|gb|AAO81180.1| NAD-dependent formate dehydrogenase, beta subunit, putative [Enterococcus faecalis V583] gi|256683647|gb|EEU23342.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T3] Length = 417 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 16 FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 74 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 75 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 134 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 135 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 194 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 195 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 254 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 255 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 313 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 314 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 373 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 374 VTRLSACGLGQSVANPMKSALALF 397 >gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] Length = 634 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 159/408 (38%), Positives = 233/408 (57%), Gaps = 7/408 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFST 62 Q R+ GL +SL + ++R + + + L G + +I EVK S LRGRGG GF T Sbjct: 147 QQRVVLGNSGLVDPESLEEYVARDGYFALWESLSAGSPEEVIEEVKESNLRGRGGGGFPT 206 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F+ +D YL+ NADE +PG DR ++ +P+ ++EG IA +A+GA + Sbjct: 207 GMKWEFLAGNDADL-KYLICNADEGDPGAYMDRTLLESDPYAVLEGMTIAGYALGAEKGY 265 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ E LQ A+++ +GLLG + G+D D+ + GAGA++CGEETA++ S Sbjct: 266 IYVRAEYPLAIERLQHAIEQAREAGLLGQDIFGEGFDFDLEIKKGAGAFVCGEETAMINS 325 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG +G P+ +PP+PA+ GL+ PT VNNVE+ A VP ILR GA W++ G E + GTK+ Sbjct: 326 LEGGRGMPKPRPPYPADEGLWAEPTNVNNVETWANVPAILRNGAEWFADIGTEESGGTKV 385 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++G V VE + +E++ + G AV GG S +P Sbjct: 386 FSVTGDVENTGLVEVPLGTRLEEVVFEI--GGGTTGGEFKAVQTGGPSGGVIPREHAETP 443 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DY+ L E+GS +G+ +IVMD ST ++ F ESCG+C PCR GT M+ + Sbjct: 444 I-DYETLMELGSMMGSGGMIVMDESTCMVDQSRFFLEFSVDESCGKCPPCRYGTKQMLEM 502 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +E + G A I L + ++E ++C LG AA P+ + F Sbjct: 503 LEGITNGAADPDVISELRSLGDSMEEMSLCGLGQTAANPVMSTLDYFE 550 >gi|172037233|ref|YP_001803734.1| NADH dehydrogenase I subunit F [Cyanothece sp. ATCC 51142] gi|171698687|gb|ACB51668.1| NADH dehydrogenase I chain F [Cyanothece sp. ATCC 51142] Length = 545 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 144/395 (36%), Positives = 244/395 (61%), Gaps = 9/395 (2%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++ D ++ G + + +L E + +I EV SGLRGRGG G+ TG+KW+ + K+ + Sbjct: 146 NIDDYIAEGGYQQLHHVLLEMTPNDVIKEVTKSGLRGRGGGGYPTGVKWATVAKMPGQQ- 204 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG DR ++ +PH ++EG IA++A+GA+ +IY+R E+ + L+ Sbjct: 205 KYVICNADEGDPGAFMDRAVLESDPHRILEGMAIAAYAVGANHGYIYIRAEYPLAIKRLE 264 Query: 138 AAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+ + GL+GS +S + +DI V GAGA++CGEETAL+ S+EGK+G PR +PP Sbjct: 265 KAIQQAKRYGLMGSQIFDSPFDFKIDIRV--GAGAFVCGEETALIASVEGKRGTPRPRPP 322 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +PA GL+G PT +NNVE+ A + I+R G WY+ G EN++GTK+F+++G + + Sbjct: 323 YPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSKGTKVFALTGKIENNGLI 382 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M + ++E+ GG+ + AV GG S C+PA + ++YD L+++G+ Sbjct: 383 EVPMGTSIRTIVEEIGGGVL-DQGTVKAVQTGGPSGGCIPA-HLLDTPVEYDSLQKLGTI 440 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +IVMD+ T +++ F + ESCG+C PCR GT + ++ +LV+ A +++ Sbjct: 441 MGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQLYDLLTKLVERKATQQD 500 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L + + ++ ++C LG A P+ ++ FR Sbjct: 501 LDQLEALCQMVKDTSLCGLGMTAPNPVISTLQYFR 535 >gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] Length = 597 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 150/393 (38%), Positives = 226/393 (57%), Gaps = 5/393 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + R ++ + K+L+ D +I + SGLRGRGG GF TG KW + D Sbjct: 129 IDEYIGRNGYEALGKVLKTMTPDDVIQVILDSGLRGRGGGGFPTGKKWQLARNLVKDADQ 188 Query: 79 -YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE +PG DR ++ +PH +IE IA +AIGA +IY+R E+ + LQ Sbjct: 189 KYVCCNADEGDPGAFMDRSVLEGDPHVVIEAMAIAGYAIGATQGYIYIRAEYPIAVQRLQ 248 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+D+ GLLG N G+D D+ + GAGA++CGEETAL+ S+EG +G+PR +PPFP Sbjct: 249 IAIDQAREYGLLGKNIFDSGFDFDLDIRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFP 308 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNVE+ A +P I+ GA W++ G E ++GTK+F++ G ++ VE Sbjct: 309 AESGLFKKPTVLNNVETYANIPQIILNGADWFASMGTEKSKGTKVFALGGKIHNTGLVEV 368 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T E+I + GGI G A GG S C+PA + I DYD L +GS +G Sbjct: 369 PMGTTLREVIYEIGGGIPNG-KAFKAAQTGGPSGGCIPAEHLDIPI-DYDNLIAIGSMMG 426 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + +IVMD ++ F ESCG+CTPCR GT + ++E++ G A ++D Sbjct: 427 SGGLIVMDEDNCMVDIAKFFLQFTVDESCGKCTPCRIGTKRLYEMLEKITSGNATMEDLD 486 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ I+ ++C LG A P+ ++ F+ Sbjct: 487 KMEKLCYYIKNNSLCGLGQTAPNPVLSTLRYFK 519 >gi|91203919|emb|CAJ71572.1| similar to proton-translocating NADH dehydrogenase I, 51 kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis] Length = 616 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 146/408 (35%), Positives = 240/408 (58%), Gaps = 5/408 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 + +I N + S+ + ++RG ++ + K+L+ + +I EV SGLRGRGG GFST Sbjct: 136 QRKQILRNCGYIDPDSIEEYIARGGYEALKKVLKTMSPEQVIEEVSKSGLRGRGGGGFST 195 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW+ K +D +++ NADE +PG DR ++ +PH ++EG +I +AIGA + Sbjct: 196 GNKWASCAKYSTDE-KFVICNADEGDPGAFMDRSLLEGDPHAVLEGMIIGGYAIGATSGY 254 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ ++ +++ G LG N GY ++I + GAGA++CGE TAL S Sbjct: 255 IYIRAEYPLAVRRIKHTIEQAGKYGFLGENILGSGYSLNIYIKEGAGAFVCGESTALQYS 314 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR +PP GL+ PT +NNVE+ A VP ++ +GA WY+ G + ++GTK+ Sbjct: 315 IEGKRGMPRTRPPQSVEAGLWDKPTVLNNVETFANVPLVMNKGAGWYAQMGTDKSKGTKI 374 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++G + +P VE M T +++ GGI AV GG S CLP + Sbjct: 375 FSLTGKIKHPGLVEVPMGTTIRQIVFDIGGGIP-RKRRFKAVQIGGPSGGCLPESLLDFP 433 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I DY+ L E+G+ +G+ + +V+D T +++ F ESCG+C PCR GT M+ + Sbjct: 434 I-DYESLLEIGAMMGSGSFVVVDDGTCMVEMARFFMDFCARESCGKCPPCRIGTTLMLDI 492 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + R+ +G+ ++ +I +L E+ ++ ++C LG +A PI+ ++ F+ Sbjct: 493 LTRITQGMGEEGDIAMLEEMCGEVKTMSLCGLGQSAPNPIKSTLRYFK 540 >gi|316935781|ref|YP_004110763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] gi|315603495|gb|ADU46030.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] Length = 428 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 150/356 (42%), Positives = 207/356 (58%), Gaps = 11/356 (3%) Query: 60 FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 F T KW FM + S+R YL VN DE+EPG+ KDR +M PH LIEG IA++A Sbjct: 60 FPTANKWRFM-RTGSERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118 Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174 IGA I VR E+ +L A+ E A+GLLG + G+D+ + VH AG YI GE Sbjct: 119 IGATEVIILVRDEYRAAATALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGE 178 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETAL+ ++EG++ PR +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY Sbjct: 179 ETALIAAIEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGADWYRSLSFT 238 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 + GTKL+ ISG V P +E M T EL+ + GGIR G LLA PGG + Sbjct: 239 DEGGTKLYGISGCVERPQLIEAPMGSTARELLHR-AGGIRNG-RALLAFQPGGGATAFFE 296 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 ++ +D+ K+ GS LGT A+IV+D + AI R FY ESCG CTPCR+G Sbjct: 297 KAEL-DVPLDFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408 W+ ++++ L G + +IDLL++ GR+ C L A P++ ++ F Sbjct: 356 LPWVSKLLDTLEAGKGTRADIDLLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411 >gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42] gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Acidovorax sp. JS42] Length = 640 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 148/374 (39%), Positives = 220/374 (58%), Gaps = 21/374 (5%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKD 94 E + ++ ++ SGLRG GGAGF G KW ++ D+P + VN DE EPGT KD Sbjct: 251 EMDAEAVLAAMEDSGLRGLGGAGFPAGRKW----RIVRDQPAPRLMAVNIDEGEPGTFKD 306 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 R + +PH +EG +IA+ +G +IY+R E+ R LQ+A++E A S Sbjct: 307 RTYLERDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRALLQSALEELRAE----SPCP 362 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 L + I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT +N E++ Sbjct: 363 LPH---IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETL 419 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 V I+ +G W++ FGR RG + FS+SG V P IT EL++++CGG+ Sbjct: 420 YWVRDIVEKGPQWFASFGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMA 479 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G L A +PGG+S LPA ++ +D+D L+ G +G+AAVIV+ + A Sbjct: 480 DG-HVLYAYLPGGASGGILPA-RLSDVPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAAL 537 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 + F+ HESCGQCTPCR GT ++M+ A + D L ++++ + +IC LG Sbjct: 538 NMMRFFAHESCGQCTPCRVGTAKAAQLMQ------APLWDEDTLDDLAQVMADASICGLG 591 Query: 395 DAAAWPIQGLIKNF 408 AA PI+ + K F Sbjct: 592 QAAPNPIRCIHKYF 605 >gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] Length = 596 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 154/395 (38%), Positives = 235/395 (59%), Gaps = 9/395 (2%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++ + + R + + K L E + +I+E+K SGLRGRGG GF TG+KW F K +D+ Sbjct: 128 ENIEECIGRDGYSALAKCLTEMTPEAVIDEIKRSGLRGRGGGGFPTGLKWEFARKYQADQ 187 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V NADE +PG DR IM +PH++IE I ++IGA +Y+R E+ E L Sbjct: 188 -KYVVCNADEGDPGAFMDRSIMEGDPHSVIEAMAICGYSIGASKGLVYIRAEYPLAIERL 246 Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ GLLG N LG D I + +GAGA++CGEETAL+ S+EG +G+P KPP Sbjct: 247 RIAIEQAEKYGLLGENI-LGTDFSFHIEIRYGAGAFVCGEETALIHSMEGHRGEPTTKPP 305 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N + Sbjct: 306 FPAESGYLNKPTNVNNVETLANIPVILNKGADWFASIGTERSKGTKVFALAGKINNVGLI 365 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T E+I + GGI+ G AV GG S CL + I D+D L GS Sbjct: 366 EVPMGTTLREVIYEIGGGIKNG-KKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAAGSM 423 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ +IVMD D + A+ + + F ESCG+C+PCR G ++ ++ R+ +G Sbjct: 424 MGSGGMIVMDED-DCMVAVAKFYLEFIVEESCGKCSPCRIGNKRLLEILTRITEGKGTME 482 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++D L +S+ I+ +C LG + P+ +++F Sbjct: 483 DLDNLRNLSQVIKDTALCGLGQTSPNPVLSTLEHF 517 >gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Moorella thermoacetica ATCC 39073] Length = 619 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 8/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + ++ + + K+L + + +I +K SGLRGRGG GF TG+KW F + S Sbjct: 151 ESIGEYIAHDGYQALSKVLTTMKPYEVIETIKKSGLRGRGGGGFPTGLKWEFAYR--SPG 208 Query: 77 P-HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P Y V NADE +PG DR I+ +PH ++EG I ++AIGA +IYVR E+ + Sbjct: 209 PVKYFVCNADEGDPGAFMDRSILEGDPHAVLEGMAIGAYAIGASQGYIYVRAEYPVAVQR 268 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ A+ + GLLG N G+D DI + GAGA++CGEETALL S+EG++G+PR +PP Sbjct: 269 LKLAISQAREQGLLGKNLFNSGFDFDIDIRLGAGAFVCGEETALLASIEGRRGEPRPRPP 328 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GL+G PT +NNVE++A +PTI+R+G W++G G E ++GTK+F+++G +N V Sbjct: 329 FPAVSGLWGKPTVINNVETLANIPTIIRQGWEWFAGIGTEKSKGTKVFALAGKINNNGLV 388 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M + ++I + GG G A GG S C+PA + I DY+ L +G+ Sbjct: 389 EIPMGTSLRQVIYEI-GGGIPGGKKFKAAQTGGPSGGCIPAEHLDAPI-DYENLTALGTI 446 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +I+MD T ++ F K ESCG+CTPCR GT M+ ++ R+ +G ++++ Sbjct: 447 MGSGGLIIMDEDTCMVDVAKFFMDFVKDESCGKCTPCRIGTTRMLEILNRITRGQGEEKD 506 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +DLL E+++ I+ +C LG A P+ I FR I HRC Sbjct: 507 LDLLVELARQIKDTALCGLGQTAPNPVLSTITYFRDEYLAHIRD-HRC 553 >gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 593 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 218/369 (59%), Gaps = 6/369 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II ++K S LRGRGGAGFSTG KW F KV D+ Y+V N +ES+PG DR IM +P Sbjct: 151 IIEKIKRSKLRGRGGAGFSTGHKWEFAYKV-DDQEKYVVCNGNESDPGAFADRCIMEGDP 209 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H +IEG +I + AIGA +IY+R + + L+ A+ +CY GLLG N + G+D+DI Sbjct: 210 HAVIEGMMICARAIGAGKGYIYIRDGYSLAVKRLRLALKQCYERGLLGKNIFESGHDLDI 269 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 ++ GA+ICGE TAL++S+EGK+ P + + G+ G PT +NN E++A VP IL Sbjct: 270 KLYPAPGAFICGEATALVQSIEGKRAMPTPRMTRTSENGIRGKPTVINNAETLANVPKIL 329 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GASW++G G + + GTK+FS++G V VE M T +++ K GGI D Sbjct: 330 RNGASWFAGLGTDTSGGTKVFSLTGKVKSNGLVEVPMGATLRDVVYKVGGGI--DQDRAF 387 Query: 282 AVIP-GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 I GG + C+P G + +DY+ L G+ +G+ ++V+D + I+ Sbjct: 388 KGIQLGGPTGGCVP-GSCLDSRVDYESLALAGTIMGSGGMVVLDETNCIVDTAKFFLDIT 446 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 + ESCG+CTPCR G M ++ER+ G + +++LL ++ +I ++C G A P Sbjct: 447 QAESCGKCTPCRIGMRRMYEILERITIGNGRDGDVELLEDLGSHIRATSLCGFGMTAPNP 506 Query: 401 IQGLIKNFR 409 + ++ FR Sbjct: 507 VLSTVRYFR 515 >gi|108744329|gb|ABG02414.1| FdsB [Xanthobacter flavus] Length = 520 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 152/411 (36%), Positives = 226/411 (54%), Gaps = 9/411 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SL+D + G + +++ + G + EV SGLRGRGGAGF Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D+ Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 160 PTGIKWRTVAAAPADQ-RYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATR 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177 ++Y R E+ ++ A+++ +GLLG + S L +D+++ GAGAY+CGEETA Sbjct: 219 GYVYCRSEYPLAFVVMEKAIEKARMAGLLGDDILGSGLAFDMEM--RMGAGAYVCGEETA 276 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGK+G R KPP PA+ GL+G PT +NN+ S+A VP IL +G +Y FG +R Sbjct: 277 LLESLEGKRGLVRAKPPLPAHKGLFGKPTVINNLVSLATVPIILDKGGKYYRDFGMGRSR 336 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT I+G+V Y E + I EL+ GG G + AV GG LP Q Sbjct: 337 GTMPIQIAGNVRYGGLFETAFGIPLGELVNDIGGGTASGR-PVKAVQAGGPLGAYLPVHQ 395 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 DY+ + +G ++V D + D+ F HESCG+CTPCR G+ Sbjct: 396 FD-TPFDYEAFAAKDALIGHGGLVVFDDTADMADMAKFAMEFCAHESCGKCTPCRIGSTR 454 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + +E+++ G + + LL ++ ++ ++CALG +P+ + +F Sbjct: 455 GVETLEKVIAGERRDENLALLEDLCHTMKLGSLCALGGFTPYPVVSALTHF 505 >gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] Length = 631 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 152/383 (39%), Positives = 223/383 (58%), Gaps = 5/383 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I + SGLRGRGG GF TG KW F SD Y++ NADE +PG DR I+ Sbjct: 188 DELIKLITDSGLRGRGGGGFPTGKKWGFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159 +PH++IE IA +AIGA IY+R E+ L+ A+D+ GLLG N G++ Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILNTGFNF 306 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I + +GAGA++CGEETAL+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAESGLWNKPTVVNNVETLANIPA 366 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ GA+WY G E + GTK+F+++G +N VE M + E+I GGI+ G Sbjct: 367 IINNGANWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTSLREIIYDIGGGIKNG-KK 425 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+PA + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ + ++ G + +++ L E+S I+ ++C LG A Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544 Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422 P+ ++ F E +++ RC Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566 >gi|189425850|ref|YP_001953027.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] gi|189422109|gb|ACD96507.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] Length = 572 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 150/413 (36%), Positives = 241/413 (58%), Gaps = 9/413 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +SL + RG ++++ + L E D + + V SGLRGRGG G+ TG+KW Sbjct: 127 VLANSGKIDPESLDQYIGRGGYESLAQALHEMTPDDVCSGVVQSGLRGRGGGGYPTGLKW 186 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + K R ++V N DE +PG DR +M +PH ++EG IA +AIGA ++YVR Sbjct: 187 QLVRKSSGSR-KFVVANGDEGDPGAYMDRSLMESDPHRILEGMAIAGYAIGAEQGYVYVR 245 Query: 127 GEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 GE+ + L+ A+ + +GLLGS +S + +DI + GAGA++CGEETALL S+ Sbjct: 246 GEYPVAAQRLRKAIKDAERAGLLGSRVLDSSFSFRIDIRI--GAGAFVCGEETALLASIM 303 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G++GQPR++PP+PA GL+GCPT +NNVE+ +P+I G ++ G +RGTK+F+ Sbjct: 304 GRRGQPRIRPPYPAEAGLWGCPTLINNVETFGNIPSIFSIGPQAFNAIGNGKSRGTKVFA 363 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 + G V +E M I+ E++ + GG+ G A GG S C+PA ++ + Sbjct: 364 LCGEVVNNGLIEVPMGISLREIVFEIGGGLANG-AAFKAAQTGGPSGGCIPAEKLDTPV- 421 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ L+ +GS +G+ +IVM + ++ F ESCG+C PCR GT + R++ Sbjct: 422 DYENLQALGSIMGSGGLIVMGEQSCMVDVARFFMEFCLDESCGKCVPCRTGTVEIYRLLS 481 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+ G A +R++ L ++ + ++ ++C LG AA P+ ++ FR E + Sbjct: 482 RICNGSASQRDLQTLEQLCRMVKDTSLCGLGAAAPNPVLSTLRWFRAEYEAHV 534 >gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] Length = 596 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 151/392 (38%), Positives = 233/392 (59%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +++ + ++R + + K+L D ++ E+ SGLRGRGG GF TG+KW +DR Sbjct: 129 ENIGEYIARDGYAALAKVLGMQPDHVLQEIIDSGLRGRGGGGFPTGLKWKITRDAKADR- 187 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE +PG DR I+ +PH+++E I + GA IY+R E+ E L+ Sbjct: 188 KYVVCNADEGDPGAFMDRSILEGDPHSILEAMAINGYCTGASHGLIYIRAEYPLAIERLR 247 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ GLLG++ G+ DI + +GAGA++CGEETAL+ S+EG++G+P +KPP+P Sbjct: 248 RAIEQAREYGLLGNDILGSGFSFDIELRYGAGAFVCGEETALIHSMEGRRGEPTVKPPYP 307 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 + G G PT VNNVE+ A +P IL RGA W+S G E ++GTK+F+++G VN +E Sbjct: 308 SESGYKGYPTNVNNVETYANIPPILLRGAEWFSSIGTEKSKGTKVFALAGKVNNVGLIEV 367 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T E+I + GGI+ G AV GG S CL + I DYD L GS +G Sbjct: 368 PMGTTLREVIFEIGGGIKNG-KKFKAVQTGGPSGGCLTEKHLDTPI-DYDNLLASGSMMG 425 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + +IVMD ++ F ESCG+CTPCR G ++ +++R+ +G+ + ++D Sbjct: 426 SGGMIVMDEDDCMVSVAKFYLEFTVDESCGKCTPCRIGNKRLLEILDRITRGLGRDEDLD 485 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L +++ I ++CALG A P+ ++NF Sbjct: 486 ELQNLARVIRDSSLCALGQTAPNPVLSTLENF 517 >gi|329902903|ref|ZP_08273301.1| tungsten-containing formate dehydrogenase beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548567|gb|EGF33228.1| tungsten-containing formate dehydrogenase beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 573 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 16/371 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + + ++ ++ SGLRG GGAGF G KW + P + VN DE EPGT KDR Sbjct: 209 RALESVLKTMEDSGLRGLGGAGFPAGRKWRIVGAEAG--PRLMAVNIDEGEPGTFKDRTY 266 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 + +PH +EG +IA++A+G +IY+R E+ + +A +D A L ++ + Sbjct: 267 LERDPHRFLEGMLIAAWAVGIDDIYIYLRDEY----HACRALLDTELAQ--LRADPPMDN 320 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT +N E++ V Sbjct: 321 MPAIHLRRGAGAYICGEESAMIESIEGKRGLPRLRPPYVAQVGLFGRPTLEHNFETLYWV 380 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 IL GA W++ GR +G + FS+SG + P IT ELI+++CGG++ G Sbjct: 381 RRILEEGAGWFTSHGRHGRKGLRSFSVSGRIRLPGVHLAPAGITIQELIDEYCGGMQEG- 439 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L A +PGG+S LPA M +D+D L+E G +G+AA++V+ + + A L Sbjct: 440 HQLYAYLPGGASGGILPA-SMNAIPLDFDTLQEHGCFIGSAAIVVLSQHDTAVNAARNLM 498 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F+K ESCGQCTPCR GT + ++E+ + ++ LL ++S + +IC LG AA Sbjct: 499 RFFKEESCGQCTPCRVGTAKALALIEQ------PQWDVALLADLSTVMRDASICGLGQAA 552 Query: 398 AWPIQGLIKNF 408 PI +++ F Sbjct: 553 PNPIDCVVRYF 563 >gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270] gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270] Length = 531 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 158/417 (37%), Positives = 237/417 (56%), Gaps = 10/417 (2%) Query: 5 QDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 Q RI +G+ + S+ + ++ G + + K++ + ++NE+K SGLRGRGGAGF T Sbjct: 50 QTRIALKNFGIVDEHSVKEYVALGGYYALAKVISSYTPEEVVNEMKNSGLRGRGGAGFPT 109 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW + + Y+V NADE +PG DR I+ +PH+++EG I +AIGA F Sbjct: 110 GRKWEGAMQQPPGQ-KYVVCNADEGDPGAFMDRSILEGDPHSVLEGMAICGYAIGADRGF 168 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLE 180 IYVR E+ + +L+ A+ + LLG N +G D V GAGA++CGE TAL+E Sbjct: 169 IYVRAEYPKAVINLREAIKKAEDENLLGDNI-MGTDFSFHVELRLGAGAFVCGEGTALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G PR K GL+ PT +NNVE+ A VP I+ +G+ WY G E++ GTK Sbjct: 228 SIEGKRGMPRTKVYRTTVKGLFQKPTVLNNVETFANVPQIMYKGSDWYRSIGTEDSSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F++ G V VE M T +E++ GG G + AV GG S C+P Sbjct: 288 VFALVGKVANAGLVEVPMGTTINEIV-YDIGGGTGNDKKVKAVQTGGPSGGCIPTDYFDT 346 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359 + D+ L ++GS +G+ ++VMD TD + I R + F ESCG+C PCREGT M+ Sbjct: 347 PV-DFGSLAKIGSIMGSGGMVVMDE-TDCMVDIARFFLDFTVEESCGKCVPCREGTKRML 404 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++E++ G + +I+ L ++S+ I ++C LG AA P+ + FR E I Sbjct: 405 ELLEKITSGKGEDGDIERLEDLSETITVASLCGLGQTAANPVVSTLHYFRNEYEAHI 461 >gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] Length = 565 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 158/394 (40%), Positives = 228/394 (57%), Gaps = 21/394 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++L D + G + + + R D I +E+ SGLRG GGAGF +G KWSF+ ++ Sbjct: 186 ENLKDYSANGGYAELQNLRNGSRTPDQIQDEILESGLRGMGGAGFPSGKKWSFV--RMNE 243 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YL VN DE EPGT KDR + EPH +EG +IA++A+ A FIY+R E+ E Sbjct: 244 GVRYLAVNGDEGEPGTFKDRYFLEREPHFFLEGMLIAAWAVNAEKCFIYMRDEYPAVLEI 303 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L + SG++ S GY I + GAGAYICGEE+A++ES+EGKKG PR +PPF Sbjct: 304 LAKEISALETSGIVES----GY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPF 356 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A+VG++ PT V+NVE++ + I R G++ + G +G + +S+SG V P Sbjct: 357 VASVGIFNKPTLVHNVETLHWIAKISREGSAVFGAHGANGRKGLRSYSVSGRVRNPGIKL 416 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ELIE + GG+ G + A PGG S LPA M +D+D L+E G+ + Sbjct: 417 APAGTTVRELIEDYSGGMLEG-HSFKAYQPGGPSSGLLPA-SMGDIPLDFDTLQEYGTFI 474 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-E 374 G+AAV+V+ +A + F++ ESCGQCTPCR G E+ VK ++Q + + Sbjct: 475 GSAAVVVLSNHDSAKEAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSQDKWD 527 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +LL E+S + +IC LG AA PI+ +IK+F Sbjct: 528 QNLLEELSVAMVDASICGLGQAAPNPIRMVIKHF 561 >gi|255019943|ref|ZP_05292017.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] gi|254970602|gb|EET28090.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] Length = 417 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 216/382 (56%), Gaps = 6/382 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + + + L+ +I EV+ SGLRG GGAGF TG+KW V + P YLV N DE Sbjct: 23 GGYTGLQRALDMAPAELIAEVERSGLRGCGGAGFPTGVKWRLR-GVDAPTPRYLVCNLDE 81 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +EPG+ KDR ++ PH ++EG +IA+ A+G A +++RGE+ L+ A+ A+ Sbjct: 82 TEPGSFKDRALLLGAPHQILEGMLIAAHALGVQYAVVFIRGEYAEGAAVLERALAAVRAA 141 Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 GLL G + + +H G YICGE++A+L ++EG++ PR KPP A GL+ PT Sbjct: 142 GLL---ELPGGALRLDIHLSLGRYICGEDSAILNAIEGRRPNPRKKPPHIAQQGLWLQPT 198 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 TVNN E+ A +P ILR G + G + GTKL+++SG V P E M T E++ Sbjct: 199 TVNNAETFAQLPGILRLGVDAWRALGVHDGVGTKLYNVSGPVRRPGVFELPMGTTLAEIL 258 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 E H GG G + V+PGGSS P + + M +D + ++GS LGT VIV+D Sbjct: 259 ETHAGGALPG-RRIRGVLPGGSSTPFVLPDKFH-TPMHFDAMAKIGSRLGTGGVIVLDDG 316 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 + + + F+ ESCG CTPCREG ++ ++ER+ +G+ +ID + + I Sbjct: 317 HCPVDFLLATTRFFARESCGFCTPCREGLPYIQWLLERIEQGLGTMADIDKIRSLGAEIA 376 Query: 387 GRTICALGDAAAWPIQGLIKNF 408 + CAL A P+ +++F Sbjct: 377 PNSFCALAPGALMPVLSGLESF 398 >gi|257086846|ref|ZP_05581207.1| NADH dehydrogenase [Enterococcus faecalis D6] gi|256994876|gb|EEU82178.1| NADH dehydrogenase [Enterococcus faecalis D6] gi|315027369|gb|EFT39301.1| HymB family protein [Enterococcus faecalis TX2137] Length = 432 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAG YICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGTYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14] gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14] Length = 635 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 156/399 (39%), Positives = 239/399 (59%), Gaps = 9/399 (2%) Query: 15 LQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++R G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K Sbjct: 164 IDSENIEEYIAREGYFALADCLLNKQPADVIDVIKRSGLRGRGGGGFPTGLKWEFASKQV 223 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 SD Y+V NADE +PG DR IM +PH+++E I ++IG+ +Y+R E+ Sbjct: 224 SDV-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAI 282 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L+ A+++ A GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P L Sbjct: 283 NRLKKAIEQARAYGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTL 341 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N Sbjct: 342 KPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSKGTKVFALAGKINNV 401 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E+I + GG G AV GG S CL + I D+D L Sbjct: 402 GLIEVPMGTTLREVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAA 459 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS +G+ +IVMD D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G Sbjct: 460 GSMMGSGGMIVMDED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRG 518 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++++D L + + I+ +C LG + P+ + NFR Sbjct: 519 TEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFR 557 >gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 486 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 150/412 (36%), Positives = 232/412 (56%), Gaps = 8/412 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAG 59 + Q RI T G + +S+ ++ G + + K L + + +I +K SGLRGRGGAG Sbjct: 1 MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSEMKPADVIELMKNSGLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F K SD H +V NADE +PG DR ++ +PH+++E I ++AIG + Sbjct: 61 FPTGVKWGFAAKYDSDIKH-VVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+++ G+LG N +G D D+ + +GAGA++CGEETA Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNI-MGTDFCFDLELKYGAGAFVCGEETA 178 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P KPPFPA G + PT VNNVE++A +P I+ +GA W++ G E ++ Sbjct: 179 LINSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSK 238 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F I G + +E M T E+I GGI GG + AV GG S L Sbjct: 239 GTKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKD 297 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I DY+ L S +G+ +IVMD ++ F E+CG+CTPCR G+ Sbjct: 298 LDAPI-DYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKR 356 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +++++ G + +++ L +S NI+ +C LG P+ ++ F Sbjct: 357 IYELLDKITIGQGTEADLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFE 408 >gi|27377427|ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum USDA 110] gi|27350571|dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110] Length = 567 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 217/381 (56%), Gaps = 27/381 (7%) Query: 34 KILEKGR------DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 K+LE+ R D I+ ++ S LRG GGAGF TG KW + + P + VN DE Sbjct: 199 KLLERLRSGAVSKDDILRLLEDSSLRGLGGAGFPTGRKWRAV--LGEPGPRLMAVNGDEG 256 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EPGT KDR + ++PH IEG +I + + A +IY+R E+ RE L+ + + G Sbjct: 257 EPGTFKDRVYLNNDPHRFIEGTLIGAHIVEASDVYIYIRDEYPAAREILEREIAKLPPGG 316 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + + GAGAYICGEE++LLES+EGK+G PR KPP+P VGL+G PT Sbjct: 317 -----------PTLHMRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQVGLFGLPTL 365 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 +NNVE++ V I+ +GA W+ G GR G + FS+SG V P IT ELI+ Sbjct: 366 INNVETLWWVRDIVEKGADWWKGHGRHERHGLRSFSVSGRVKNPGMKLAPSGITVRELID 425 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 ++CGG+ G A +PGG+S LPA M +D+ L++ G +G+AA++++ + Sbjct: 426 EYCGGMADG-HTFYAYLPGGASGGILPA-SMDDIPLDFGTLEKYGCFIGSAAIVILSQKD 483 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 + A L F++ ESCGQCTPCR GT +M++ V A LL E+S+ + Sbjct: 484 SVRAAALNLMKFFEDESCGQCTPCRVGTQKAALLMQKPVWNRA------LLEELSQAMRD 537 Query: 388 RTICALGDAAAWPIQGLIKNF 408 +IC LG AA+ P+ +IK F Sbjct: 538 ASICGLGQAASNPLTTVIKYF 558 >gi|62632270|gb|AAX89149.1| HoxF [Allochromatium vinosum] Length = 538 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 153/421 (36%), Positives = 245/421 (58%), Gaps = 11/421 (2%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI GL SL ++ G + + + L E ++ EV SGLRGRGG Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K+ + Y+V NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 179 GYPTGLKWSTIAKMPPGQ-KYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEE 175 ++YVR E+ E L+ A+ + +G LG+ +++ ++V+I GAGA++CGEE Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEI--RLGAGAFVCGEE 295 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EG +GQPR +PP+PA GL+GCPT +NNVE+ A + I+R G W++ G E Sbjct: 296 TALMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEG 355 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+F+++G + +E M + ++IE GGI G AV GG S C+P Sbjct: 356 SKGTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIPDG-RAFKAVQTGGPSGGCIPR 414 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + + DYD LK +G+ +G+ +IVMD ++ ++ + R F ESCG+C PCR GT Sbjct: 415 RHLDIPV-DYDSLKTLGTIMGSGGLIVMDETSCMVD-VARFMEFCMSESCGKCIPCRAGT 472 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 M +++ L K + ++ LL ++ + ++C LG A P+ ++ FR E + Sbjct: 473 WQMHALLDTLTKAEGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAK 532 Query: 416 I 416 + Sbjct: 533 L 533 >gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] Length = 596 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 230/381 (60%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I EVK SGLRGRGG GF TG+KW F + P Y+V NADE +PG DR I+ +P Sbjct: 154 VIEEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H+++E IA +AIGA+ +IYVR E+ + L+ A+++ GLLG N G+D DI Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDI 272 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETALL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA W+S G E ++GTK+F+++G VN +E M T E+I + GGI G Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA + I DYD L +GS +G+ ++VMD T ++ F Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ Sbjct: 451 DESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 I+ FR E I + RC Sbjct: 511 LSTIRYFRDEYEAHIKE-KRC 530 >gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium sp. D12] gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12] gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12] Length = 594 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 152/407 (37%), Positives = 233/407 (57%), Gaps = 5/407 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + R+ N + +S+ D ++ G + + K L E + +I E++ +GLRGRGG GF TG Sbjct: 114 ERRVLRNCGLINPESIEDYLAEGGFLAIQKALTEMTPEQVIEEIQKAGLRGRGGGGFPTG 173 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW K + Y+V NADE +PG DR I+ +P +IEG +IA +AIGA A + Sbjct: 174 NKWEIALKQAGEE-KYIVCNADEGDPGAFMDRSILEGDPCGVIEGMMIAGYAIGASQALV 232 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ L+ A+++ G LG N + D+ + GAGA++CGEETAL++S+ Sbjct: 233 YIRAEYPLAISRLEKAIEQARKKGYLGKNVFGTSFSFDVTLKFGAGAFVCGEETALIQSM 292 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 +G++G+P+ KPP+PA G G PT VNNVE++ VP I+R G+ W+ G E++ GTK+F Sbjct: 293 QGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIRYGSDWFREIGTESSPGTKVF 352 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G VN VE M T E+I GGI+ G AV GG S CL + +I Sbjct: 353 ALAGKVNNVGLVEVPMGTTLREIIFDIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDISI 411 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + ++ Sbjct: 412 -DFDSLSAKGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYEIL 470 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 R+ +G + ++ LL E+S I+ ++C LG + P+ +K FR Sbjct: 471 SRITEGEGRMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 517 >gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] Length = 596 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 230/381 (60%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I EVK SGLRGRGG GF TG+KW F + P Y+V NADE +PG DR I+ +P Sbjct: 154 VIEEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H+++E IA +AIGA+ +IYVR E+ + L+ A+++ GLLG N G+D DI Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDI 272 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETALL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA W+S G E ++GTK+F+++G VN +E M T E+I + GGI G Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA + I DYD L +GS +G+ ++VMD T ++ F Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ Sbjct: 451 DESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 I+ FR E I + RC Sbjct: 511 LSTIRYFRDEYEAHIKE-KRC 530 >gi|312904133|ref|ZP_07763301.1| HymB family protein [Enterococcus faecalis TX0635] gi|310632609|gb|EFQ15892.1| HymB family protein [Enterococcus faecalis TX0635] gi|315578478|gb|EFU90669.1| HymB family protein [Enterococcus faecalis TX0630] Length = 432 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKSRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+C PCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCIPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|260220425|emb|CBA27950.1| NADH-quinone oxidoreductase subunit F 2 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 600 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 149/394 (37%), Positives = 225/394 (57%), Gaps = 30/394 (7%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G +L+ ++S+G D + +I ++ SGLRG GGAGF G KW ++ D+ Sbjct: 230 GYALAAALSQGTQDA---------ESVIKAMEDSGLRGLGGAGFPAGRKW----RIVRDQ 276 Query: 77 P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P + VN DE EPGT KDR + +PH +EG ++A+ +G +IY+R E+ R Sbjct: 277 PAPRLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAAQVVGTTACYIYLRDEYHGCRA 336 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + + L +N V I + GAGAYICGEE+A++ES+EGK+G+PR++PP Sbjct: 337 ILETEIAK------LQANPPCPLPV-IELRRGAGAYICGEESAMIESIEGKRGEPRMRPP 389 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 + A VGL+G PT +N E++ V I+ +GASW+S FGR +G + FS+SG V +P Sbjct: 390 YIAQVGLFGRPTLEHNFETLYWVRDIVEKGASWFSSFGRNGRKGLRSFSVSGRVKFPGVK 449 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 I+ EL++++CGG+ G NL A +PGG+S PA + +D+D L+ G Sbjct: 450 LAPAGISVAELVDEYCGGMLDG-HNLYAYLPGGASGGIFPA-SLSHVPLDFDTLQPHGGF 507 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAVIV+ + A + FY HESCGQCTPCR GT +ME V + Sbjct: 508 IGSAAVIVLSQHDKARDAALNMMRFYAHESCGQCTPCRVGTAKAATLMESPVWDHTTLED 567 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++++ + +IC LG AA P++ + K F Sbjct: 568 LNVV------MTDASICGLGQAAPNPVRCVQKYF 595 >gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 154/422 (36%), Positives = 239/422 (56%), Gaps = 7/422 (1%) Query: 4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFS 61 +Q+R + N + K++ D ++ G + + + L ++ EVK + LRGRGGAGF Sbjct: 134 NQERNVICNNIKIDSKNIDDYLANGGYSALGEALGSMTPVEVLEEVKKANLRGRGGAGFP 193 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KW + D Y++VNADE +PG DR ++ PH+++EG +I +AIGA Sbjct: 194 AGVKWEGS-RNAPDPVKYVIVNADEGDPGAFMDRAVLEGNPHSVLEGLIIGGYAIGAQEG 252 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ E++ A+ + A GLLG N GY+ + V+ GAGA++CGE TAL+ Sbjct: 253 YIYVRHEYPLAVENITLAIQQAEACGLLGENIFGSGYNFRVFVNQGAGAFVCGESTALMT 312 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG+ G+PR K VGL+G PT +NNVE+ A VP I+ +GA W++ G E+++GTK Sbjct: 313 SIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINKGADWFTSIGTESSKGTK 372 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G + VE M I+ +++ K GG G AV GG S C+P + Sbjct: 373 IFSLVGKIANTGLVEVPMGISLRDIVFKI-GGGIPGGKKFKAVQTGGPSGGCIPESLLDL 431 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + +D L GS +G+ +IVMD T ++ F ESCG+C PCREG M Sbjct: 432 PV-GFDELTAAGSMMGSGGMIVMDEDTCMVDTARYFVKFLTDESCGKCVPCREGLRQMDN 490 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G + +I+LL +++ + ++CALG +A P ++ FR E I + Sbjct: 491 ILTRITEGKGGEGDIELLEALAETAQEASLCALGKSAPNPFLSTLQYFRDEYEAHIKE-K 549 Query: 421 RC 422 RC Sbjct: 550 RC 551 >gi|293383048|ref|ZP_06628966.1| protein HymB [Enterococcus faecalis R712] gi|293388209|ref|ZP_06632730.1| protein HymB [Enterococcus faecalis S613] gi|312907363|ref|ZP_07766354.1| HymB family protein [Enterococcus faecalis DAPTO 512] gi|312909979|ref|ZP_07768827.1| HymB family protein [Enterococcus faecalis DAPTO 516] gi|291079713|gb|EFE17077.1| protein HymB [Enterococcus faecalis R712] gi|291082393|gb|EFE19356.1| protein HymB [Enterococcus faecalis S613] gi|310626391|gb|EFQ09674.1| HymB family protein [Enterococcus faecalis DAPTO 512] gi|311289937|gb|EFQ68493.1| HymB family protein [Enterococcus faecalis DAPTO 516] Length = 432 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L + + A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVSSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 745 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/369 (39%), Positives = 208/369 (56%), Gaps = 21/369 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ ++++ LRG GGAGF TG KW + + P + +N DE EPGT KDR + Sbjct: 387 KEDILKALESASLRGLGGAGFPTGRKWRAV--LGEPGPRLMAINGDEGEPGTFKDRFYLE 444 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +PH IEG +I + + A +IY+R E+ RE L + A G Sbjct: 445 TDPHRFIEGMLIGAHIVEAAEVYIYLRDEYPASREILAREIARLPAGG-----------P 493 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + + GAGAYICGEE+ALLES+EGK+G PR KPP+P VGL+G PT +NNVE++ V Sbjct: 494 TLHLRRGAGAYICGEESALLESIEGKRGMPRHKPPYPFQVGLFGLPTLINNVETLWWVRD 553 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ +G W+ GR + G + +S+SG V P +T ELIE+ CGG+ G Sbjct: 554 IVEKGGEWWQAQGRNDRHGLRSYSVSGRVKNPGVKLAPAGVTITELIEEFCGGMADG-HK 612 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A +PGG+S LPA M +D+ L++ G +G+AAV+V+ D+ A L F Sbjct: 613 FRAYLPGGASGGILPA-SMNDIPLDFGTLEKYGCFIGSAAVVVLSDKDDVKDAALNLMKF 671 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ++ ESCGQCTPCR GT +ME + DLL E+S+ + +IC LG AA+ Sbjct: 672 FEDESCGQCTPCRVGTQKAAALME------TRAWNRDLLNELSQTMRDASICGLGQAASN 725 Query: 400 PIQGLIKNF 408 P+ +IK F Sbjct: 726 PLTSVIKYF 734 >gi|221639519|ref|YP_002525781.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] gi|221160300|gb|ACM01280.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] Length = 416 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75 +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ + D Sbjct: 18 TLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGD 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ + Sbjct: 78 GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR +PPF Sbjct: 138 VERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P E Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T ELIE+ GG+ G L A PGG + Q+ +D+ + + GS Sbjct: 251 APMGTTARELIER-AGGVSGD-GRLRAFQPGGGASGFFGPDQL-DLPLDFGHVAKAGSMF 307 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +IV+D + + + R FY ESCG CTPCREG + ++++R G ++ ++ Sbjct: 308 GTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367 Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +LL + GR+ C L A P+ + F E R+ + R Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416 >gi|315174470|gb|EFU18487.1| HymB family protein [Enterococcus faecalis TX1346] Length = 432 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R ++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKKFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK +PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTERPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|255975952|ref|ZP_05426538.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T2] gi|307279196|ref|ZP_07560254.1| HymB family protein [Enterococcus faecalis TX0860] gi|255968824|gb|EET99446.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T2] gi|306504321|gb|EFM73533.1| HymB family protein [Enterococcus faecalis TX0860] Length = 432 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P + + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLTDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|71280105|ref|YP_268785.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H] gi|71145845|gb|AAZ26318.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H] Length = 534 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 149/398 (37%), Positives = 225/398 (56%), Gaps = 10/398 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM--PKVCS-D 75 S+ D + + + L+ I++E+K SGLRGRGGA F TG+KW + KV S D Sbjct: 118 SIEDYIKHQGFIGLSNALKLSAQGIVDEMKISGLRGRGGAAFPTGIKWQTVLDAKVTSSD 177 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + Y+V NADE + GT DR IM +P +LIEG +IA A+GA +IY+R E+ + ++ Sbjct: 178 QKKYIVCNADEGDSGTYSDRLIMEADPFSLIEGMIIAGIAVGATQGYIYLRSEYPQAQKI 237 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ A+ Y LG + + D+ V GAGAYICGEET+LLESLEGK+G R KPP Sbjct: 238 LEQAIANAYQDNYLGDAIQGTQHQFDLEVRIGAGAYICGEETSLLESLEGKRGLVRAKPP 297 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 PA GL+G PTTVNNV S+A VPTIL +GA +Y +G +RGT F ++G++ V Sbjct: 298 LPAITGLFGQPTTVNNVISLATVPTILAKGAQYYQDYGVGRSRGTLPFQLAGNIKQGGLV 357 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + T +L+ G G + + A+ GG LP Q + +DY+ +G+ Sbjct: 358 ELAFGTTLADLVNDFGAGTYTG-ETMKAIQVGGPLGAYLPKYQWQTP-LDYEAFSSIGAV 415 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG ++V D S + + F ESCG+CTPCR G+ + V+++++ Sbjct: 416 LGHGGIVVFDDSVSMTEQARFAMEFCGVESCGKCTPCRIGSTRGVEVIDKMITAHEHDEP 475 Query: 375 I----DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I +LL ++ + ++CA+G P++ ++++F Sbjct: 476 IEALNELLVDLCDTMVDGSLCAMGGMTPIPVRSVMQHF 513 >gi|257466530|ref|ZP_05630841.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 580 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 236/409 (57%), Gaps = 9/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63 + RI N + +S+ D + + + + K L++ +I E++ SGLRGRGG GF TG Sbjct: 100 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 159 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW K + Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A I Sbjct: 160 IKWEIASKQEGNE-KYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 218 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+R E+ LQ A+++ G LG + + +DVD+ GAGA++CGEETAL++ Sbjct: 219 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDL--KFGAGAFVCGEETALIQ 276 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ G AV GG S CL + Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 395 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +I D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 396 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 503 >gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15] Length = 571 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 161/395 (40%), Positives = 235/395 (59%), Gaps = 21/395 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L+D S G + + K +GR D + E++ +GLRG GGAGF T KW + Sbjct: 183 QKLADYRSAGGY-QLLKDCREGRVTVDSLAEELEHAGLRGLGGAGFPTYRKWQAV--RAE 239 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P Y V+NADE EPGT KDR + EPH +EG +++++A+ A +IY+R E+ Sbjct: 240 PGPRYAVINADEGEPGTFKDRYYLEREPHGFLEGALVSAWAVEAQALYIYLRDEYPGLLV 299 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ A+ E +G++ + G+ +I+ GAGAYICGEE+AL+ESLEGK G+PR +PP Sbjct: 300 VLKDAIAELETAGIV----EPGF---VILRRGAGAYICGEESALIESLEGKPGKPRHRPP 352 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A GL+G PT VNNVE++ +P I +GA WY+ GR +G + FS+SG V P Sbjct: 353 FVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWYASQGRHGRKGLRSFSVSGRVARPGVH 412 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 +T +ELIE++CGG+ G L+A +PGG+S LPA + +D+D L+E G Sbjct: 413 VAPAGVTLNELIEEYCGGMAEG-HRLVAYLPGGASGGILPASKA-DIPLDFDTLQEHGCF 470 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAVIV+ D+ A L F+ ESCGQCTPCR GT M+ ++ER + Sbjct: 471 IGSAAVIVLSDQDDLQAAAANLLGFFADESCGQCTPCRVGTEKMLTLLER------DTWD 524 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L +++ + +IC LG AA P+ L+++FR Sbjct: 525 EQTLQQLAAVMADASICGLGQAAPNPVLSLLRDFR 559 >gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] Length = 595 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 146/376 (38%), Positives = 221/376 (58%), Gaps = 4/376 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E D +I +K SGLRGRGGAGF T +KW+F K Y+ NADE +PG D Sbjct: 145 LTEMTPDDVIEILKTSGLRGRGGAGFPTWLKWNFA-KAQPAGQKYVCCNADEGDPGAFMD 203 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R ++ +PH ++E IA + IG++ +IYVR E+ + L+ A+++ G LG + Sbjct: 204 RSVLEGDPHAVLEAMTIAGYTIGSNQGYIYVRAEYPIAVKRLEIAINQSREMGFLGKDIF 263 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D DI + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+G P+ +NNVE+ Sbjct: 264 GSGFDFDIELRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLFGKPSILNNVET 323 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A +P I+ +G W++ G E ++GTK+F++ G ++ VE M T E+IE+ GGI Sbjct: 324 WANIPQIILKGPEWFASMGTEKSKGTKVFALGGKIHNTGLVEVPMGTTLREIIEEIGGGI 383 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G A GG S C+PA + I DYD L +GS +G+ +IVMD ++ Sbjct: 384 PNG-KKFKAAQTGGPSGGCIPASLIDTEI-DYDNLLAIGSMMGSGGLIVMDEDNCMVDIA 441 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F ESCG+CTPCR GT + +++++ +G A ++D + E+ I+ +C L Sbjct: 442 KFFLEFTVDESCGKCTPCRIGTKRLYEMLDKITRGNATLEDLDKMEELCYYIKENALCGL 501 Query: 394 GDAAAWPIQGLIKNFR 409 G A P+ ++ FR Sbjct: 502 GQTAPNPVLSTLRYFR 517 >gi|296448075|ref|ZP_06889978.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b] gi|296254432|gb|EFH01556.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b] Length = 517 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 221/391 (56%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L D ++ G + K E G +I EV SGLRGRGGAGF G+KW + +DR Sbjct: 116 NLDDYVAHGGGQGLAKAFEIGPAKVIEEVTKSGLRGRGGAGFPAGIKWKTVADAPADR-R 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG I +AIGA FIY+R E+ + E L Sbjct: 175 YVVTNADEGDSGTFADRMVMEGDPFVLIEGMTICGYAIGASKGFIYLRAEYPQCAEVLTE 234 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ +G LG N + G+ DI + GAGAY+CGEET+LLESLEGK+G R KPP PA Sbjct: 235 ALEAARKAGWLGPNVRGSGFAFDIELRIGAGAYVCGEETSLLESLEGKRGIVRAKPPLPA 294 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 +VG PT VNNV ++A P IL +G +Y+ G +RGT I+G+V + E Sbjct: 295 HVGFMSRPTVVNNVLTLATAPAILAKGGEYYASLGVGRSRGTMPLQIAGNVKFGGLYETP 354 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T E++ GG G + AV GG +P + DY+ ++ S +G Sbjct: 355 FGLTLGEIVNDIGGGSLSG-RPVRAVQCGGPLGAYVPP-SLFDTPFDYEAFQKHDSLIGH 412 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ + F ESCG+CTPCR G+ + ++R+V+G+ + I+L Sbjct: 413 GGLVVFDDTVDMAQMARFGMEFCAIESCGKCTPCRIGSTRGVETIDRIVEGVDVEANIEL 472 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ ++ ++CALG A +P++ ++++ Sbjct: 473 LSDLCHTMKFGSLCALGGFAPYPVESALRHY 503 >gi|27378248|ref|NP_769777.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110] gi|27351395|dbj|BAC48402.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110] Length = 518 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/395 (37%), Positives = 220/395 (55%), Gaps = 8/395 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +SL D + G + +++ L G + I+ EV ASGLRGRGGAGF TG+KW + + +DR Sbjct: 115 RSLEDYRAHGGYKGLERALSLGSEAILTEVTASGLRGRGGAGFPTGIKWKTVAQAKADR- 173 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V NADE + GT DR IM +P +IEG A +GA +IY+R E+ E+++ Sbjct: 174 KFIVCNADEGDSGTFADRMIMEGDPFLVIEGMTTAGITVGATKGYIYIRSEYPHAVEAMK 233 Query: 138 AAVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 AA+ G LG K+G Y D+ V GAGAY+CGEET+LLESLEG++G R KPP Sbjct: 234 AAIQAAKRGGYLGD--KIGGSTYSFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPP 291 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 PA+ GL+G PT +NNV S A +P IL GA Y+ FG +RGT ++G++ + Sbjct: 292 LPAHHGLFGKPTVINNVLSFAAIPFILAEGAKAYADFGMGRSRGTMPIQLAGNIRHGGLY 351 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + +T EL++ GG G + AV GG P + DY+ Sbjct: 352 ETAFGVTLGELVDDIGGGTFTGRP-VRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARDGL 409 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G ++V D S D+ + F ESCG+CTPCR G+ + +E+++ G Sbjct: 410 IGHGGIVVFDDSVDMRRQARFAMEFCAVESCGKCTPCRIGSTRGVETIEKIINGERVSEN 469 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + L+ ++ ++ ++CALG +P+ +K+FR Sbjct: 470 LALVEDLCNTMKFGSLCALGGFTPYPVLSALKHFR 504 >gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 637 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 238/409 (58%), Gaps = 7/409 (1%) Query: 4 DQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFS 61 +Q R+ N L S+ D ++ G + ++K + + + ++ VK SGLRGRGG GF Sbjct: 133 NQLRLLIGNNIKLDPTSIDDYIAIGGYTALEKAVCQMKPEQVVGLVKESGLRGRGGGGFP 192 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G KW F + D Y+VVNADE +PG DR ++ PH ++EG +I ++AIGAH Sbjct: 193 SGNKWEFT-RNAPDPVKYVVVNADEGDPGAFMDRALLEGSPHAVLEGLIIGAYAIGAHEG 251 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 F+YVR E+ ++ A+ + G LG N G+D + V GAGA++CGEETAL+ Sbjct: 252 FLYVRQEYPLAVHNITLAIQKAEEYGFLGKNILGSGFDFTVEVAQGAGAFVCGEETALIR 311 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+P+ +PPFPA GL+ PT +NNVE+ A +P I+ +G + ++ G ++GTK Sbjct: 312 SLEGKTGEPKPRPPFPAVRGLWNKPTNINNVETWANIPLIINKGPAAFASVGTGGSKGTK 371 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G V VE M IT +++ K GGI G AV GG + C+P + Sbjct: 372 IFSLVGKVKNTGLVEVPMGITLRDIVYKIGGGIP-GEKKFKAVQTGGPAGGCMPESLLDM 430 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + D+D L + GS +G+ +IV+D T ++ F ESCG+C PCREG M+ Sbjct: 431 EV-DFDQLTKAGSMMGSGGMIVLDEETCMVDFARFFLSFLAEESCGKCVPCREGIQQMLA 489 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ L G +K +++LL ++++ + ++CALG A P+ +K+FR Sbjct: 490 ILNDLTHGKGKKGDLELLEQLTE-VSSASLCALGKGAPNPVLSTLKHFR 537 >gi|257089783|ref|ZP_05584144.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis CH188] gi|256998595|gb|EEU85115.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis CH188] Length = 417 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 16 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 74 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 75 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 134 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 135 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 194 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 195 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKSRGLYEVNLGTPLEEII 254 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 255 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 313 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+C PCR GT ++ ++ + + A ++ L ++ + Sbjct: 314 DSVNVVDYLVHVAAFFAHESCGKCIPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 373 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 374 VTRLSACGLGQSVANPMKSALALF 397 >gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 594 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 235/409 (57%), Gaps = 9/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63 + RI N + +S+ D + + + + K L++ +I E++ SGLRGRGG GF TG Sbjct: 114 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 173 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW K Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A I Sbjct: 174 IKWEIASKQ-EGNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 232 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+R E+ LQ A+++ G LG + + +DVD+ GAGA++CGEETAL++ Sbjct: 233 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDL--KFGAGAFVCGEETALIQ 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ G AV GG S CL + Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 409 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +I D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 410 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 517 >gi|300860588|ref|ZP_07106675.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus faecalis TUSoD Ef11] gi|300849627|gb|EFK77377.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus faecalis TUSoD Ef11] Length = 432 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTP R GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPFRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|311108352|ref|YP_003981205.1| NAD-dependent formate dehydrogenase subunit beta [Achromobacter xylosoxidans A8] gi|310763041|gb|ADP18490.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter xylosoxidans A8] Length = 523 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 153/410 (37%), Positives = 233/410 (56%), Gaps = 6/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL D + G + + L I++E+ ASGLRGRGGA F Sbjct: 101 LKQQERLTFARVGVTDPLSLQDYAAHGGLQGLQRALTMEPGQIVDEMVASGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + D+ Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVAGTPGDQ-KYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + ++L+AA+ + G LG + G D+ V GAGAYICGEET+LL Sbjct: 220 GYIYVRSEYPQAIDTLEAAIARARSVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL +GA++Y +G + GT Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE++ ++ +L+ GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKHGGLVEKAFGLSLRDLLYGFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D S D+ + F ESCG+CTPCR G+ + Sbjct: 399 -VPLDYEAYIQISAMVGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVK-GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++++V G +++++ LL ++ + G ++CALG A +P+ + +F Sbjct: 458 ETIDKIVAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHF 507 >gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 597 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 153/401 (38%), Positives = 232/401 (57%), Gaps = 7/401 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++ + + R + + K+L+ RD +INE+K SGLRGRGG GF TGMKW F K D+ Sbjct: 130 NIDEYIGRDGYQGLAKVLQDLSRDDVINEMKTSGLRGRGGGGFPTGMKWEFCKKSPGDK- 188 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +++ NADE +PG DR ++ +PH ++EG I ++A+GA +IY R E+ + L Sbjct: 189 KFVICNADEGDPGAFMDRSLLEGDPHAILEGMAIGAYAMGADEGYIYCRAEYPLAIKRLH 248 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + GLLG N +G D +H GAGA++CGEETAL+ S+EG++G PR +PPF Sbjct: 249 QAIAQAEEYGLLGKNI-MGTDFSFEIHVKEGAGAFVCGEETALMASIEGQRGMPRPRPPF 307 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PAN GL+ P+ +NNVE+ A V I+ G +WY+ G E ++GTK+F+++G V VE Sbjct: 308 PANKGLWEKPSNINNVETWANVAQIILHGGAWYASVGTEKSKGTKVFALTGKVKNTGLVE 367 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E++ + GGI AV GG S CL + I Y+ L G+ + Sbjct: 368 VPMGTTIREVVFEIGGGILND-KKFKAVQIGGPSGGCLTEEHLDLPI-SYESLTAAGAIM 425 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++V+D T ++ F + ESCG+C PCREGT M+ ++ R+ +G Q+ +I Sbjct: 426 GSGGLVVVDEDTCMVDVAKFFLEFTQAESCGKCVPCREGTKKMLDILTRITEGKGQEGDI 485 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L + I+ ++C LG A P+ I+ FR E I Sbjct: 486 EKLQYLGTQIKDASLCGLGQTAPNPVLTTIRYFRHEYEAHI 526 >gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528] gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528] Length = 599 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 224/408 (54%), Gaps = 9/408 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SL D + RG + + K + + + ++ E+ SGLRGRGGAGF TG KW + P Sbjct: 131 SLEDYVERGGYKALKKAISSMKPEDVLEEITKSGLRGRGGAGFPTGRKWKTAADI-DTSP 189 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V N DE +PG DR IM +P+++IEG + ++A+G F Y+R E+ E++Q Sbjct: 190 IYVVCNGDEGDPGAFMDRSIMEGDPNSVIEGMTLCAYAVGGTNGFAYIRDEYGLAVENMQ 249 Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ LLG+N LG D DI + G GA++CGE TAL+ S+EG G+PR K Sbjct: 250 KAINKAKDENLLGNNI-LGTDFSFDIQIVRGGGAFVCGESTALMSSIEGMVGEPRAKYIH 308 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTV 254 GL+G PT +NNVE+ A VP I+ +G WY G E ++GTK+FS+ G V V Sbjct: 309 TTEKGLWGQPTVLNNVETWANVPIIIEKGGDWYHAIGTMEKSKGTKVFSLVGKVKNTGLV 368 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T E+I GG+ AV GG S CLPA + + DYD L + S Sbjct: 369 EVPMGTTLREIIYDIGGGVLNDR-KFKAVQIGGPSGGCLPAEYLDLPV-DYDTLVKADSM 426 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +IVMD T ++ F ESCG+C PCREG M+ ++ + G ++ + Sbjct: 427 MGSGGMIVMDDRTCMVDVTRYYLSFLAEESCGKCVPCREGVKRMLEILTDICNGDGKEGD 486 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 I+ L E+ ++C+LG +A P+ I+ FR EE I + RC Sbjct: 487 IEELLEICSMTSKASLCSLGKSAPNPVIASIRYFRDEFEEHI-KNKRC 533 >gi|326562844|gb|EGE13132.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 103P14B1] Length = 359 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/348 (41%), Positives = 210/348 (60%), Gaps = 11/348 (3%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + LQ Sbjct: 5 YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQN 64 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++EC A+ LLG + LG ++ + VH GAG YICGEETAL+ LEG++ PR KPPFP Sbjct: 65 AINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFP 123 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPC 252 G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 124 QVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDAG 183 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKEM 311 E T ELIE GG++ G +L A +PGG+S L A + +MD+D + + Sbjct: 184 LWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMKA 241 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G AQ Sbjct: 242 GSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQAQ 301 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 302 ADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 349 >gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098] gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098] Length = 526 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 224/392 (57%), Gaps = 10/392 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCK 93 I E + II+ VK SGLRGRGGAGF G KW + D P Y++ NADE +PG Sbjct: 76 IYELDQREIIDIVKDSGLRGRGGAGFPVGRKWEAAYR--EDSPIKYIICNADEGDPGAFM 133 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152 DR ++ +PH+++E I +FAIGA+ FIYVR E+ + ++L+ A+ + A LLG N Sbjct: 134 DRSVLELDPHSVLEAMAIGAFAIGANKGFIYVRAEYPKAVKALEKAIKDAKAYNLLGENI 193 Query: 153 --SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 S +D+++ GAGA++CGE TAL+ES+EGK+G PR K GL+G PT +NN Sbjct: 194 LDSDFSFDIEL--RLGAGAFVCGEGTALMESIEGKRGMPRNKEYRTTVKGLWGKPTVINN 251 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270 VES+A + I+ +G +W+ FG E + GTK+F++SG V VE +M + + ++ Sbjct: 252 VESLANIGQIINKGPAWFRTFGTEKSPGTKVFALSGKVKRAGLVEVAMGTSINTIVYDIG 311 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GI+ + AV GG S C+P ++ D++ LK +GS +G+ ++VMD ++ Sbjct: 312 KGIQADKE-AKAVQTGGPSGGCIPK-RLFDTACDFESLKAIGSIMGSGGMVVMDEDDCMV 369 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 F ESCG+CTPCR G + +++ L KG A + +D L E++ + ++ Sbjct: 370 DVARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDLTKGKADQESLDKLDELAHIVAETSL 429 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 C LG ++ PI +K F E I + C Sbjct: 430 CGLGKSSPNPIISTMKYFYDEYEAHIGKTKTC 461 >gi|317125324|ref|YP_004099436.1| formate dehydrogenase subunit beta [Intrasporangium calvum DSM 43043] gi|315589412|gb|ADU48709.1| formate dehydrogenase beta subunit [Intrasporangium calvum DSM 43043] Length = 509 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 156/417 (37%), Positives = 233/417 (55%), Gaps = 7/417 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + ++ G W + + L ++ E+ ASGLRGRGGAGF Sbjct: 95 LARQHRVSFARVGVIAPTDIAAYEEHGGWAGLRRALVMEPAEVVEELAASGLRGRGGAGF 154 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + +D ++ N DE + GT DR + +P TLIEG ++A+ A+GA Sbjct: 155 PTGIKWRTVLQTSADL-KFVCCNLDEGDSGTFADRMLAEGDPFTLIEGMLVAAHAVGARE 213 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178 +IY R E+ +L+ A+D YA G LG + G D+ D+ V GAGAYICGEET++ Sbjct: 214 GYIYCRSEYPAAAATLRRAIDVAYAHGWLGDRIQ-GSDLSFDLFVRLGAGAYICGEETSM 272 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G+ R KPP PA GL+G PT VNNV + A VP IL G + Y+ G +RG Sbjct: 273 LESLEGRRGEVRAKPPIPAIEGLFGRPTVVNNVLTFAAVPMILADGGAAYAALGSGRSRG 332 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T++F ++G+V VE I+ +L+E + GG G + AV GG LPA + Sbjct: 333 TQVFQLAGNVRQGGIVETDFGISLRDLVEDYGGGTVTG-RPVRAVQVGGPLGAYLPATDL 391 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ L E+G LG V+V D + D + F ESCG+CTPCR G+ Sbjct: 392 D-VPMDYEALLEVGGMLGHGGVVVWDDTFDAARMARFAMEFCAKESCGKCTPCRIGSQRG 450 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + ++R++ G ++R + LL ++ + ++CA+G P+Q I++F + R Sbjct: 451 VETIDRIIAGTERERNLLLLDDLCTTMTKGSLCAMGGLTPMPVQSAIRHFAEDFDRR 507 >gi|332558532|ref|ZP_08412854.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N] gi|332276244|gb|EGJ21559.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N] Length = 416 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 154/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75 +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ + D Sbjct: 18 TLAEWRAEGGYEAVERARNMAPGEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGD 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ + Sbjct: 78 GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR +PPF Sbjct: 138 VEHAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P E Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T ELIE+ GG+ G L A PGG + ++ +D+ + + GS Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKAGSMF 307 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +IV+D S + + R FY ESCG CTPCREG + ++++R G ++ ++ Sbjct: 308 GTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367 Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +LL + GR+ C L A P+ + F E R+ + R Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416 >gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] Length = 603 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/394 (37%), Positives = 217/394 (55%), Gaps = 20/394 (5%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G D + L++ + +I E+ S LRGRGGAGF TGMKW K + Y++ NADE Sbjct: 195 GRADGIKAALDQSPEQVIEEISNSKLRGRGGAGFPTGMKWRLTRKAVGEN-RYVICNADE 253 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EPGT KDR ++ P + +G IA +A+GA +Y+RGE+ + LQ + + A Sbjct: 254 GEPGTFKDRLLLTEFPDLVFDGMTIAGYALGARRGVVYLRGEYAYLWDPLQEVLRDRRAL 313 Query: 147 GLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GLLG++ + G+D DI + GAGAY+CGEE+ALLES+EGK+G PR +PPFP G Sbjct: 314 GLLGADICGRSGFDFDIRIQLGAGAYMCGEESALLESMEGKRGAPRDRPPFPTERGYLRQ 373 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT ++NVE+ A I+ +GA+W++GFG + + GTKL S+SG P E IT +E Sbjct: 374 PTAIDNVETFACAARIVEKGAAWFTGFGTKESTGTKLMSVSGDCQRPGVYEVPFGITVNE 433 Query: 265 LIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 L++ + G D I P G SV A + G + Y+ L GS ++ Sbjct: 434 LLD-----LVGAPDAEYVQISGPSGQSV----APKDFGRRIAYEDLSTGGS------TMI 478 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 + D++ + + + F+ HESCG C PCR G + + ME++V G A +I ++ Sbjct: 479 FGPNRDVLDIVLQFADFFVHESCGWCAPCRVGAPLLKQGMEKIVAGRATLADIAATEALA 538 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + + C LG A PI + +F L E R+ Sbjct: 539 NTVMRMSRCGLGQTAPNPILTTMLSFPELYEARL 572 >gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile 630] gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-66c26] gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile CIP 107932] gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-63q42] gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile ATCC 43255] gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-76w55] gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-97b34] gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-37x79] gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-23m63] gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08] gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07] gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile QCD-32g58] gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit HymB-like [Clostridium difficile] gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08] gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07] Length = 628 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 220/371 (59%), Gaps = 7/371 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKW---SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +I EVK SGLRGRGGAGF TG KW S P +D+ ++V NADE +PG DR ++ Sbjct: 184 VIAEVKTSGLRGRGGAGFPTGSKWEAASKNPAGPTDK-KFVVCNADEGDPGAFMDRSVLE 242 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 +PH+++E I +AIG+ +IY+R E+ + E L+ A+ + GLLG N G++ Sbjct: 243 GDPHSVLEAMAICGYAIGSDTGYIYIRAEYPKSIERLKVAIAQAEKYGLLGENILGTGFN 302 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + + +GAGA++CGE TAL+ S+EG++G+PR+K + GL+ PT +NNVE+ A +P Sbjct: 303 FKLELKYGAGAFVCGEGTALMHSIEGRRGEPRMKTYSSSKSGLWKSPTCLNNVETFANIP 362 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ +G W++ G E++ GTK+F++ G V VE M T +++ + GGI G Sbjct: 363 AIILKGGDWFANLGTEDSSGTKVFALGGKVENVGLVEVPMGTTLRDIVFEIGGGIPEG-K 421 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S C+P + I D+ L +GS +G+ ++V+D S ++ Sbjct: 422 KFKAVQTGGPSGGCIPTEHLDTPI-DFGSLSSIGSMMGSGGMLVLDESDCMVDIAKFFLE 480 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F ESCG+CTPCR GT ++ ++ ++ +G +++D L +++ I+ ++C LG AA Sbjct: 481 FTVEESCGKCTPCRIGTTRLLEILTKITEGNGTLQDLDDLENLAETIQTASLCGLGKAAP 540 Query: 399 WPIQGLIKNFR 409 P+ ++ F+ Sbjct: 541 NPVLSTLQYFK 551 >gi|256958880|ref|ZP_05563051.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|257078911|ref|ZP_05573272.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1] gi|294779582|ref|ZP_06744976.1| HymB family protein [Enterococcus faecalis PC1.1] gi|307271121|ref|ZP_07552404.1| HymB family protein [Enterococcus faecalis TX4248] gi|256949376|gb|EEU66008.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|256986941|gb|EEU74243.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1] gi|294453372|gb|EFG21780.1| HymB family protein [Enterococcus faecalis PC1.1] gi|306512619|gb|EFM81268.1| HymB family protein [Enterococcus faecalis TX4248] gi|315033792|gb|EFT45724.1| HymB family protein [Enterococcus faecalis TX0017] gi|315036877|gb|EFT48809.1| HymB family protein [Enterococcus faecalis TX0027] gi|323480624|gb|ADX80063.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Enterococcus faecalis 62] gi|329571419|gb|EGG53106.1| putative protein HymB [Enterococcus faecalis TX1467] Length = 432 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSGEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P + + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLTDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRKEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A P++ + F Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412 >gi|315170079|gb|EFU14096.1| HymB family protein [Enterococcus faecalis TX1342] Length = 432 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRKEATASDLPRLEKMLTH 388 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 + + C LG + A ++ + F Sbjct: 389 VTRLSACGLGQSVATSMKSALTLF 412 >gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 562 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/386 (36%), Positives = 228/386 (59%), Gaps = 5/386 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNA 84 G+ +D I + II+E+ SGLRGRGG G+ G+KW+ + K Y++ NA Sbjct: 168 GYQALLDCIWHRQPAAIIDEISKSGLRGRGGGGYPAGLKWATVAKAALPPGGRKYVICNA 227 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE +PG DR ++ PH ++EG IA++A+GA ++YVR E+ L+ A+ + Sbjct: 228 DEGDPGAFMDRSVLESAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVARLKKAISQAE 287 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG +D + + GAGA++CGEETAL+ S+EGK+GQPR +PP+PA G+ G Sbjct: 288 KLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEETALVASIEGKRGQPRPRPPYPAEYGIKG 347 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 CPT +NNVE++A + I+ RG +W++ G E ++GTK+F+++G V +E M IT Sbjct: 348 CPTLINNVETLANITAIINRGGAWFATLGSEQSKGTKVFALAGKVVNTGLIEVPMGITLH 407 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E++E+ GG G ++ AV GG S C+PA + + DY+ L+ GS +G+ +I+M Sbjct: 408 EIVEEMGGGTPAGG-SIKAVQTGGPSGGCIPAAHFQLPV-DYESLQAEGSIMGSGGLIIM 465 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D + ++ F ESCG+C PCR GT ++ ++E++ G + ++ L E+ Sbjct: 466 DEGSGMVDVARFFMEFCVDESCGKCVPCRVGTKQILLLLEKIGAGAGGQDDLARLQELCA 525 Query: 384 NIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++C LG +A P+ +K FR Sbjct: 526 MVQQGSLCGLGMSAPNPVLSTLKFFR 551 >gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 638 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/415 (38%), Positives = 237/415 (57%), Gaps = 7/415 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q+R+ N+ + ++D+++ G + + K L E II EVK+SGLRGRGG GF T Sbjct: 148 QERVVLRNIGHIDPTDITDAIAAGGYQGLAKALGEMTPAEIIEEVKSSGLRGRGGGGFPT 207 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW K P Y++ NADE +PG DR I+ +P +++EG IA++A+GA F Sbjct: 208 GLKWQSCAKA-EGEPKYVICNADEGDPGAYMDRSILEGDPFSVLEGMTIAAYAVGARHGF 266 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 +YVR E+ L A+ + GLLG N LG+D DI + GAGA++CGE TAL+ S Sbjct: 267 VYVRNEYPLAVVRLVGAIKQAKQYGLLGENILGLGFDFDIKISTGAGAFVCGESTALMRS 326 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK G+PR K G P+ +NNVE+ A VP I++ GA W++ G ++GTK+ Sbjct: 327 LEGKVGRPRAKYIHTVEHGYRDKPSNLNNVETFANVPMIIKNGAQWFASMGTATSKGTKV 386 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+ G+V VE M + ++ GG AV GG S C+PA M Sbjct: 387 FSLVGNVKNTGLVEVPMGASLRHIVYDVGGGTL--KKAFKAVQSGGPSGGCIPA-SMLDI 443 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ L E G+ +G+ +IVMD+ T ++ F + ESCGQCTPCREG ++++ Sbjct: 444 PVDYEKLVETGAMMGSGGMIVMDQDTCMVDVARYFLEFLQEESCGQCTPCREGIKRLLQI 503 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + + +G ++ +I+LL E+S ++ ++C LG +A P+ I+ FR E I Sbjct: 504 LTDICQGRGREGDIELLQELSATVKELSLCGLGGSAPNPVLSTIRYFRDEYESHI 558 >gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 596 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 4/377 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I EVK SGLRGRGG GF TG+KW F + P Y+V NADE +PG DR I+ +P Sbjct: 154 VIEEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H++IE IA +AIGA+ +IYVR E+ + L+ A+++ GLLG + G+D DI Sbjct: 213 HSVIEAMAIAGYAIGANYGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDI 272 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETALL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWSKPTIINNVETFANIPPII 332 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA W+S G E ++GTK+F+++G VN +E M T E+I + GGI G Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA + I DYD L +GS +G+ ++VMD T ++ F Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ Sbjct: 451 DESCGKCAPCRIGTKRMLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510 Query: 402 QGLIKNFRPLIEERIDQ 418 I+ FR E I + Sbjct: 511 LSTIRYFRDEYEAHIKE 527 >gi|297203644|ref|ZP_06921041.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] gi|197717222|gb|EDY61256.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] Length = 533 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 223/410 (54%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ S D + G + LE ++ EV ASGLRGRGGAGF Sbjct: 105 LARQNRVTFARVGVTDPLSAEDYEAHGGLAGLRAALELAPADVVAEVTASGLRGRGGAGF 164 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + C+D ++ NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 165 PAGIKWKTVLD-CADELKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGASE 223 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ +++ A+ G LG LG D D+ V GAGAYICGEET++ Sbjct: 224 GYLYIRSEYPDAVATMRRAIGVAREHGWLG-KGILGSALDFDLHVRVGAGAYICGEETSM 282 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT VNNV ++A VP ++ +GA Y G E +RG Sbjct: 283 LESLEGKRGMVRAKPPIPAIEGLFGRPTVVNNVLTLATVPVVMAKGAQAYERLGVERSRG 342 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T++F + G++ + VE + IT ELIE++ GG G A + GG LP M Sbjct: 343 TQVFQLGGNIAHGGIVETAFGITLRELIEEYGGGTHSGRPVRTAQV-GGPLGAYLPE-SM 400 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ G+ +G V+V D S D+ F ESCG+CTPCR G Sbjct: 401 FDLPMDYEAFAAAGAMVGHGGVVVFDDSVDMAAQARFAMEFCAEESCGKCTPCRVGAVRG 460 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V++R+V G + + LL ++ + ++CA+G P++ + +F Sbjct: 461 VEVIDRIVAGTHRDENLALLEDLCDLMTEGSLCAMGGLTPLPVRSALTHF 510 >gi|227823604|ref|YP_002827577.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium fredii NGR234] gi|227342606|gb|ACP26824.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium fredii NGR234] Length = 518 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 154/411 (37%), Positives = 227/411 (55%), Gaps = 7/411 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ G+ SL D G ++K + I+ EV SGLRGRGGAG Sbjct: 98 FLKNQTRLTFARCGVTDPLSLDDYRGHGGLRGLEKAVSMAPAAIVAEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + + Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLEAQGAQ-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177 ++Y R E+ ++ AA++ A+G+LG+ S LG + D+ V GAGAY+CGEET+ Sbjct: 217 KGYVYTRSEYPHAIAAMSAAIEIARAAGVLGT-SVLGSAHAFDMEVRTGAGAYVCGEETS 275 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +R Sbjct: 276 LLNSLEGKRGLVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGAAYYRDFGMGRSR 335 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT I+G+V + E + +T E+++K GG G + AV GG P Sbjct: 336 GTIPIQIAGNVKHGGLYETAFGLTLGEIVDKIGGGTASGRP-VKAVQVGGPLGAYFPR-S 393 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 394 LFDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTR 453 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V +R+ GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 454 GVEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVTSAMTHF 504 >gi|118472465|ref|YP_884576.1| formate dehydrogenase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118173752|gb|ABK74648.1| formate dehydrogenase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 532 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 225/409 (55%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + QDR+ F + S D + G + + L+ ++ EV SGLRGRGGAGF Sbjct: 101 MATQDRVTFARVGVTDPVSPDDYLDHGGLAGLRRALQMSPAEVVAEVTDSGLRGRGGAGF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + C+D ++ NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 161 PAGIKWKTVLD-CADALKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGATE 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +++AA+D G LG + G D+ V G GAYICGEET++L Sbjct: 220 GYIYIRSEYPDAIATMRAAIDIARGRGWLGDDVLGSGLRFDMHVRVGGGAYICGEETSML 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV +++ VP +L GA Y+ FG +RGT Sbjct: 280 ESLEGKRGMVRAKPPIPAINGLFGKPTVVNNVLTLSSVPLVLAEGAQAYADFGVGRSRGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++F + G++ VE + IT EL+E + GG G + AV GG LP+ + Sbjct: 340 QIFQLGGNIRRGGIVERAFGITLGELVEHYGGGTLSGR-PVRAVQVGGPLGAYLPSDRFD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ E G+ +G ++V D + D+ F ESCG+CTPCR G+ M Sbjct: 399 -LPMDYEAFAEAGAMVGHGGIVVFDETVDMAAQARFAMEFCAAESCGKCTPCRVGSVRGM 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R+ G ++ + LL ++ + ++CA+G P++ + +F Sbjct: 458 EVIDRITAGDHREENLALLDDLCDVMTEGSLCAMGGLTPMPVRSALTHF 506 >gi|154247408|ref|YP_001418366.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] gi|154161493|gb|ABS68709.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] Length = 520 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/411 (36%), Positives = 227/411 (55%), Gaps = 9/411 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SL+D + G + +++ + G + EV SGLRGRGGAGF Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D+ Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 160 PTGIKWRTVAAAPADQ-RYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATK 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177 ++Y R E+ ++ A+++ +GLLG N S L +D+++ GAGAY+CGEETA Sbjct: 219 GYVYSRSEYPLAFVVMEKAIEKAREAGLLGDNILGSGLSFDMEM--RMGAGAYVCGEETA 276 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGK+G R KPP PA+ GL+ PT +NN+ S+A VP IL +G +Y FG +R Sbjct: 277 LLESLEGKRGLVRAKPPLPAHKGLFQKPTVINNLVSLATVPVILDKGGKYYRDFGMGRSR 336 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT I+G++ + E + I EL+ GG G + AV GG LP Q Sbjct: 337 GTMPIQIAGNIKFGGLFETAFGIPLGELVYDIGGGTASGRP-VKAVQAGGPLGAYLPTHQ 395 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 DY+ + +G ++V D + D+ F HESCG+CTPCR G+ Sbjct: 396 FD-TPFDYEAFAAKDALIGHGGLVVFDDTADLADMAKFAMEFCAHESCGKCTPCRIGSTR 454 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + +++++ G +++ + LL ++ ++ ++CALG +P+ + +F Sbjct: 455 GVETIDKVIAGEKREQNLALLTDLCHTMKLGSLCALGGFTPYPVLSALNHF 505 >gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548] gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548] Length = 526 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 222/390 (56%), Gaps = 6/390 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I E R II+ VK SGLRGRGGAGF TG KW +D Y++ NADE +PG D Sbjct: 76 IFELDRKEIIDIVKDSGLRGRGGAGFPTGRKWEAAFLQDTD-IKYIICNADEGDPGAFMD 134 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 R ++ +PH+++E I + AIG++ FIYVR E+ + +L+ A+D+ LLG N Sbjct: 135 RSVLELDPHSVLEAMAICARAIGSNKGFIYVRAEYPKAVRALEIAIDQAKKYNLLGDNI- 193 Query: 155 LGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 LG D DI + GAGA++CGE TAL+ES+EG++G PR K GL+G PT +NNVE Sbjct: 194 LGSDFSFDIELRLGAGAFVCGEGTALMESIEGRRGMPRNKEYRTTVRGLWGKPTVINNVE 253 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 + A + I+ +G++W+ FG E + GTK+F++SG V VE M + D+++ G Sbjct: 254 TFANIAQIINKGSAWFRSFGTEKSPGTKVFALSGKVKNAGLVEVEMGTSIDQIVYDIGKG 313 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 I+ D AV GG S C+P ++ D++ L +GS +G+ ++VMD ++ Sbjct: 314 IQNDKD-AKAVQTGGPSGGCIPK-RLFDTACDFESLGAIGSIMGSGGMVVMDEDDCMVDV 371 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 F ESCG+CTPCR G + +++ + KG A +D L E+S+ + ++C Sbjct: 372 ARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDITKGKANHETLDKLEELSEIVSEASLCG 431 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 LG ++ PI ++ F E +++ C Sbjct: 432 LGKSSPNPIISTMRYFYDEYEAHVNENKTC 461 >gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] Length = 596 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 159/405 (39%), Positives = 241/405 (59%), Gaps = 9/405 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + ++++ G ++ + K+L + +I+E+K SGLRGRGG GF TG+KW F K + Sbjct: 128 EDIEEAIAMGAYEALGKVLTTMTPEQVIDEMKKSGLRGRGGGGFPTGLKWEFAYKQ-KET 186 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P Y+V NADE +PG DR IM +PH+++EG IA +AIGA+ IYVR E+ + L Sbjct: 187 PKYVVCNADEGDPGAFMDRSIMEGDPHSVLEGMAIAGYAIGANHGVIYVRAEYPLAVKRL 246 Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q A+ + GLLG N + +DV+I GAGA++CGEETALL S+ G++G+PR +P Sbjct: 247 QIAIKQAREYGLLGDNIFGTDFSFDVEI--RFGAGAFVCGEETALLNSVMGRRGEPRPRP 304 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+PA GL+ PT +NNVE+ A VP I+ GA W+S G E ++GTK+F+++G VN Sbjct: 305 PYPAVKGLWNKPTIINNVETFANVPVIISNGAEWFSSIGTEKSKGTKVFALTGKVNRTGL 364 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 +E M T E+I GGI G AV GG S C+P + ++DYD L +G+ Sbjct: 365 IEVPMGTTLREIIFDIGGGIPDG-KRFKAVQIGGPSGGCIPEEHLD-TVIDYDSLISLGA 422 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ ++VMD T ++ F ESCG+C PCR GT M+ +++++ G + Sbjct: 423 MMGSGGLVVMDEDTCMVNVAKFFLEFIVDESCGKCAPCRIGTKRMLEILDKITSGKGEPE 482 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +ID L +++ I+ +C LG A + ++ FR E I+Q Sbjct: 483 DIDRLEKLATTIKDTALCGLGQTAPNAVLSTLRYFRNEYEAHINQ 527 >gi|77463676|ref|YP_353180.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|77388094|gb|ABA79279.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter sphaeroides 2.4.1] Length = 416 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75 +L++ + G ++ VD+ II+ V+A+ L GRGGAGF G KW FMP+ + + Sbjct: 18 TLAEWRAEGGYEAVDRARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGE 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ + Sbjct: 78 GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR +PPF Sbjct: 138 VERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P E Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T ELIE+ GG+ G L A PGG + ++ +D+ + + GS Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKAGSMF 307 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +IV+D + + + R FY ESCG CTPCREG + ++++R G ++ ++ Sbjct: 308 GTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367 Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +LL + GR+ C L A P+ + F E R+ + R Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416 >gi|319779887|ref|YP_004139363.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165775|gb|ADV09313.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 518 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 150/393 (38%), Positives = 219/393 (55%), Gaps = 8/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL G + + L I+ EV SGLRGRGGAGF TG+KW + DR Sbjct: 117 SLESYKKHGGLNGLMNALALTPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLDTAGDR-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A GA F+YVR E+ ++ Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGIATGATKGFVYVRSEYPHAVAAMNK 235 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV+ +G+LG++ S +D++I V GAGAY+CGEETALL+SLEGK+G R KPP Sbjct: 236 AVEIARKAGVLGASVLGSPHAFDMEIRV--GAGAYVCGEETALLDSLEGKRGMVRAKPPL 293 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GL+G PT +NNV S+A VP I+ +GA++Y FG +RGT I+G+V + E Sbjct: 294 PAHKGLFGKPTVINNVISLASVPVIMDKGAAFYKDFGMGRSRGTIPVQIAGNVKFAGLFE 353 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +T E++++ GG G + AV GG P + DY+ + Sbjct: 354 AAFGMTLGEIVDEIGGGTATGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAAKDGLI 411 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G A ++V D + D++K F ESCG+CTPCR G+ + +++L GI ++ + Sbjct: 412 GHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRGVETIDKLAAGIEPEKNL 471 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L+ ++ ++ ++CALG +P+ I +F Sbjct: 472 ALVTDLCNTMKFGSLCALGGFTPYPVMSSITHF 504 >gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 596 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 157/377 (41%), Positives = 229/377 (60%), Gaps = 4/377 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+EVK SGLRGRGG GF TG+KW F + P Y+V NADE +PG DR I+ +P Sbjct: 154 VIDEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H+++E IA +AIGA+ +IYVR E+ + L+ A+++ GLLG + G+D DI Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDI 272 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETALL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA W+S G E ++GTK+F+++G VN +E M T E+I + GGI G Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA + I DYD L +GS +G+ ++VMD T ++ F Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ Sbjct: 451 DESCGKCAPCRIGTKRMLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510 Query: 402 QGLIKNFRPLIEERIDQ 418 I+ FR E I + Sbjct: 511 LSTIRYFRDEYEAHIKE 527 >gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] Length = 596 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 231/381 (60%), Gaps = 5/381 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+EVK SGLRGRGG GF TG+KW F + P Y+V NADE +PG DR I+ +P Sbjct: 154 VIDEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H+++E IA +AIGA+ +IYVR E+ + L+ A+++ GLLG + G+D DI Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDI 272 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETALL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA W+S G E ++GTK+F+++G VN +E M T E+I + GGI G Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA + I DYD L +GS +G+ ++VMD T ++ F Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT M+ V++++ G ++ +I+ L E++K I+ +C LG A P+ Sbjct: 451 DESCGKCAPCRIGTRRMLEVLDKITSGKGEEGDIERLEELAKTIKATALCGLGQTAPNPV 510 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 I+ FR E I + RC Sbjct: 511 LSTIRYFRDEYEAHIKE-KRC 530 >gi|257452669|ref|ZP_05617968.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] Length = 580 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 235/409 (57%), Gaps = 9/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63 + RI N + +S+ D + + + + K L++ +I E++ SGLRGRGG GF TG Sbjct: 100 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 159 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW K Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A I Sbjct: 160 IKWEIASKQ-EGNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 218 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+R E+ LQ A+++ G LG + + +DV++ GAGA++CGEETAL++ Sbjct: 219 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNL--KFGAGAFVCGEETALIQ 276 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ G AV GG S CL + Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 395 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +I D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 396 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 503 >gi|87120636|ref|ZP_01076530.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121] gi|86164279|gb|EAQ65550.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121] Length = 527 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 218/391 (55%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL+D S +D + + L+ +++EVK SGLRGRGGA F TG+KW + + + Sbjct: 125 SLTDYKSTHGYDGLVRALDMSSQALVDEVKDSGLRGRGGAAFPTGIKWQTVLNTPAAQ-K 183 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE + GT DR M +P LIEG IA A+ A +IY+R E+ ++ L Sbjct: 184 YIICNADEGDSGTFADRLQMEADPFALIEGMTIAGLAVEATQGYIYLREEYPHAKDILNE 243 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G LG N G + V GA AYICGEETAL+ESLEGK+G R KPP PA Sbjct: 244 AIQVAEQNGYLGENILDSGKTFHLEVRIGAKAYICGEETALMESLEGKRGMVRPKPPLPA 303 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV S++ + IL +G +Y FG +RGT F ++G++ YP VE + Sbjct: 304 IEGLFGQPTVVNNVLSLSTIAIILAKGGKFYQEFGMGRSRGTMPFQLAGNLKYPGLVETA 363 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL+ GG R G + +V GG LP Q MDY+ L G+ LG Sbjct: 364 FGITMKELLFDFGGGTRSGRP-MRSVQSGGPLGAYLPESQWH-LEMDYEALSAEGAVLGH 421 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++ D + D+++ F ESCG+CTPCR G+ + V++R+ + ++L Sbjct: 422 GGLVAFDDTVDMLEQARFSLEFCVEESCGKCTPCRIGSTRGVEVIDRIRADENRDDNLEL 481 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++CA+G +P+Q +++F Sbjct: 482 LEDLCDTMVSGSLCAMGGMTPFPVQSALEHF 512 >gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] Length = 594 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 235/409 (57%), Gaps = 9/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63 + RI N + +S+ D + + + + K L++ +I E++ SGLRGRGG GF TG Sbjct: 114 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 173 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW K Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A I Sbjct: 174 IKWEIASKQ-EGNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 232 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+R E+ LQ A+++ G LG + + +DV++ GAGA++CGEETAL++ Sbjct: 233 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNL--KFGAGAFVCGEETALIQ 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ G AV GG S CL + Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 409 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +I D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 410 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 517 >gi|254469752|ref|ZP_05083157.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062] gi|211961587|gb|EEA96782.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062] Length = 518 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 154/397 (38%), Positives = 223/397 (56%), Gaps = 12/397 (3%) Query: 20 LSDSMSRGHWD------NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 ++D +S H++ + + L I+ EV SGLRGRGGAGF TG+KW+ + KV Sbjct: 112 ITDPLSLEHYEAHHGFLGLKRALAMTPAEIVQEVTDSGLRGRGGAGFPTGIKWNTVLKVQ 171 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D+ Y+V NADE + GT DR IM +P LIEG IA A+GA +IY R E+ Sbjct: 172 GDQ-KYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMAIAGIAVGATKGYIYTRSEYPHAI 230 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L A+ +G+LG S +G + D+ V GAGAY+CGEET+LL SLEGK+G R Sbjct: 231 AILHDAIQIARKAGILGP-SVMGSEHAFDMEVREGAGAYVCGEETSLLNSLEGKRGIVRA 289 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPP PA GL+G PT VNNV S+A VP I+ RGA +Y +G + GT ++G++ Sbjct: 290 KPPLPAIEGLFGKPTVVNNVMSLASVPIIMDRGARFYRDYGVGYSHGTIPIQLTGNIKNS 349 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + +T +ELI GG G + AV GG P + I DY+ E Sbjct: 350 GLFETAFGLTLNELIYDIGGGTLSGRP-VKAVQVGGPLGAYFPP-SLFDTIFDYEAFVER 407 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 +G A ++V D + D++K F ESCG+CTPCR G+ + V++R+ KG Sbjct: 408 NGMIGHAGIVVFDDTVDMLKQARFAMEFCAIESCGKCTPCRIGSVRGVEVLDRIAKGDQP 467 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++I+LL ++ ++ ++CALG A +P+ + +F Sbjct: 468 EQQIELLTDLCDTMKMGSLCALGGFAPYPVMSSLTHF 504 >gi|126462508|ref|YP_001043622.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] gi|126104172|gb|ABN76850.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] Length = 416 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75 +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ + + Sbjct: 18 TLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGE 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ + Sbjct: 78 GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR +PPF Sbjct: 138 VERAIHEARDAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P E Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T ELIE+ GG+ G L A PGG + ++ +D+ + + GS Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKAGSMF 307 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +IV+D S + + R FY ESCG CTPCREG + ++++R G ++ ++ Sbjct: 308 GTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367 Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +LL + GR+ C L A P+ + F E R+ + R Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416 >gi|94309499|ref|YP_582709.1| respiratory-chain NADH dehydrogenase domain-containing protein [Cupriavidus metallidurans CH34] gi|93353351|gb|ABF07440.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus metallidurans CH34] Length = 518 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 156/410 (38%), Positives = 225/410 (54%), Gaps = 5/410 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D ++ + + + L I+ EV SGLRGRGGA Sbjct: 98 FLKKQERLTFMRVGITDPLSLDDYIAHEGFVGLTRALSMAPAEIVQEVVDSGLRGRGGAA 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + SD Y+V NADE + GT DR +M +P LIEG VIA A+GA Sbjct: 158 FPTGIKWKTVLGARSDV-KYVVCNADEGDSGTFSDRMVMEDDPFMLIEGMVIAGLAVGAE 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + +AA++ +G LG + + G + V GAGAY+CGEETAL Sbjct: 217 QGYIYTRSEYPHAIAATEAAIEIATRAGWLGDDIRGSGRCFQLEVRKGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA +Y FG +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAKFYQDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 337 TLPFQLAGNIRQGGLVEKAFGVTLRELMLDYGGGTRSGR-AIRAVQVGGPLGAYLPESRF 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I DY+ G+ +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 396 DTPI-DYEAYAAFGAVVGHGGIVVFDETVDMAKMARYAMEFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 455 VEVMDRIIAGDQPVKHVALVRDLCDTMVNGSLCAMGSMTPYPVLSALDEF 504 >gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 622 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 150/391 (38%), Positives = 233/391 (59%), Gaps = 5/391 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 LS ++RG + + + L + +I E+ ASGLRGRGGAGF TG KW F + P Sbjct: 155 LSHYLARGGYAGLHRALTGLSPEQVIEEITASGLRGRGGAGFPTGRKWQFC-REAPGAPK 213 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE +PG DR I+ +PH+++EG +I+ +A+GA ++YVR E+ +LQ Sbjct: 214 YVICNADEGDPGAFMDRSILEGDPHSVVEGLIISGYAVGASRGYVYVRAEYPLAVSTLQQ 273 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV + +GLLG N G+D D+ + GAGA++CGEETAL+ SLEG++G PR +PP+PA Sbjct: 274 AVAQARKAGLLGRNILGSGFDFDVEIKEGAGAFVCGEETALIASLEGRRGMPRPRPPYPA 333 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT +NNV+++A+ I+ A+ ++ G +RGT +F+++G+V VE Sbjct: 334 VSGLFGRPTNINNVKTLAMAAYIMAGHAADFAAMGTGQSRGTCVFALAGNVRRMGLVEVP 393 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M E++ GGI L AV GG S CLPA + +DY+ L G+ +G+ Sbjct: 394 MGTPLGEVVFDIGGGIPENR-QLKAVQIGGPSGGCLPA-EATDVGLDYESLSLSGAIMGS 451 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++VMD +T ++ F + ESCG+C PCR GT M+ ++ER+ G + +I+ Sbjct: 452 GGMVVMDENTCMVDVARYFLTFVQAESCGKCVPCRLGTRQMLAILERITAGDGRPEDIET 511 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ I+ ++CALG A P+ ++ F Sbjct: 512 LEGLAAQIKKTSLCALGGTAPNPVLTTLRYF 542 >gi|86748476|ref|YP_484972.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] gi|86571504|gb|ABD06061.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] Length = 428 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 149/360 (41%), Positives = 203/360 (56%), Gaps = 19/360 (5%) Query: 60 FSTGMKWSFM--------PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 F T KW FM P C YL VN DE+EPG+ KDR +M P LIEG I Sbjct: 60 FPTANKWRFMRAGAEKAGPGAC-----YLCVNGDETEPGSFKDRLLMEALPQQLIEGATI 114 Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAY 170 A++A+GA I VR E+ +L A+ E +GLLG + G+D+ + VH AG Y Sbjct: 115 AAYAMGATEVIILVRDEYRAAAAALSRAIVEAEQTGLLGRDILGSGFDLTMRVHASAGRY 174 Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230 I GEETAL+ +LEG++ PR +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY G Sbjct: 175 IVGEETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSAVPSIVEHGAEWYQG 234 Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 N GTKL+ +SG V P +E M T EL + CGGIR G L A PGG + Sbjct: 235 LSHTNEGGTKLYGVSGCVARPQLIEAPMGTTARELFDL-CGGIRQG-RALFAFQPGGGAT 292 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 L ++ +D+ K GS LGT A+IV+D + AI R FY ESCG CTP Sbjct: 293 AFLETAEL-DVPLDFAHTKRAGSSLGTGALIVLDDHACPVAAIGRHMRFYARESCGLCTP 351 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408 CR+G W+ ++++ + G + +IDLL++ GR+ C L A P++ ++ F Sbjct: 352 CRDGLPWVAKLLDTIEAGKGTRGDIDLLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411 >gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] Length = 635 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 226/384 (58%), Gaps = 6/384 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ D +L K + +I+ +K SGLRGRGG GF TG+KW F K +D Y+V NADE Sbjct: 177 GYMALADSLLHKKPEEVIDVIKRSGLRGRGGGGFPTGLKWEFANKQKADM-KYVVCNADE 235 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR IM +PH+++E + ++IG+ +Y+R E+ + L+ A+ + Sbjct: 236 GDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGSPKGLVYIRAEYPLAIQRLKIAIAQAREY 295 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GLLG N + DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G P Sbjct: 296 GLLGKNIFGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAEAGYLGKP 355 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVE++A +P IL +GA W+S G E ++GTK+F+++G +N +E M T E+ Sbjct: 356 TNVNNVETLANIPIILTKGAEWFSSIGTERSKGTKVFALAGKINNVGLIEVPMGTTLREV 415 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 I + GG G AV GG S CL + I D+D L GS +G+ +IVMD Sbjct: 416 IYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAEGSMMGSGGMIVMDE 473 Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G +++D L + K Sbjct: 474 D-DCMVSVSRFYLDFTVEESCGKCTPCRIGNKRLLEMLNKITEGRGTMKDLDALSTLGKV 532 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 I+ +C LG + P+ + NF Sbjct: 533 IKDTALCGLGQTSPNPVLSTLNNF 556 >gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] Length = 628 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 157/404 (38%), Positives = 239/404 (59%), Gaps = 7/404 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + +S G ++ ++K+L E ++ E+ AS LRGRGG GF TG KW Sbjct: 149 VLKNCGHIDAEHIEEYISTGGYEALEKVLFEMTPQEVVEEISASNLRGRGGGGFPTGYKW 208 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + + ++ Y+V N DE +PG DR IM +PH +IEG +I ++A+GA +IYVR Sbjct: 209 SQVARQ-EEKTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGAREGYIYVR 267 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ L+ A+ + SGLLG + LG D +H GAGA++CGE +AL S+EG Sbjct: 268 AEYPLAISRLKRAISQAEESGLLGDHI-LGTDFSFRLHINRGAGAFVCGEGSALTASIEG 326 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+G PR+KPP GL+G PT +NNVE+ A VP I+ +GA W+ G E + GTK F++ Sbjct: 327 KRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIINKGAEWFRSIGPEKSPGTKAFAL 386 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V + +E M T E+I GG G AV GG S CL + + + +D Sbjct: 387 TGSVRHTGLIEVPMGTTLREVIYDI-GGGIKGDGAFKAVQIGGPSGGCLVSKDLDVS-LD 444 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT M+ ++ER Sbjct: 445 FDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 504 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +V G + ++DLL E++ I +C LG +AA P+ +K F Sbjct: 505 IVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVMSTLKVF 548 >gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 616 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 221/367 (60%), Gaps = 4/367 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ V+ASGLRGRGG GF TG KW F + S Y++ NADE +PG DR ++ +P Sbjct: 174 VIDVVEASGLRGRGGGGFPTGKKWRFAAQRKSAE-KYIICNADEGDPGAFMDRAVLEGDP 232 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++E VIA +A+GA IY+R E+ + L+ A+++ A +LG + G+D D+ Sbjct: 233 HAVLEAMVIAGYAVGARHGVIYIRAEYPLAIKRLETALEQARALRVLGGDILGSGFDFDL 292 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + +GAGA++CGEETAL++S+EGK+G P KPPFPA GL+ PT VNNVE++A +P I+ Sbjct: 293 KLKYGAGAFVCGEETALIQSIEGKRGMPTYKPPFPAVEGLWKRPTIVNNVETLANIPAIM 352 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA W+ G G E++ GTK+F+++G V+ VE M T E+I GGI G Sbjct: 353 RNGAQWFRGIGTESSPGTKVFALAGKVDRVGLVEVPMGTTLREIIFGVGGGIHEG-KAFK 411 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S CL + + I DYD LK GS +G+ +IVMD ++ F Sbjct: 412 AVQTGGPSGGCLTSANLDLPI-DYDSLKAAGSMMGSGGMIVMDEDDCMVDVAKFFLEFTM 470 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR G+ + V++R+ KG + +++ + ++ + ++C LG A P+ Sbjct: 471 DESCGKCLPCRIGSKQLHLVLDRISKGEGAQEDLESIRSIAAAMATASLCGLGQTAPNPV 530 Query: 402 QGLIKNF 408 ++NF Sbjct: 531 LSTLRNF 537 >gi|330882979|gb|EGH17128.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. race 4] Length = 334 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 139/335 (41%), Positives = 197/335 (58%), Gaps = 6/335 (1%) Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW MPK S YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ Sbjct: 2 TGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRG 61 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +I++RGE++ + L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ Sbjct: 62 YIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALIN 121 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRG 238 SLEG++ PR KPPFPA VG++G PT VNNVE++ VP I+ G WY RE + G Sbjct: 122 SLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHG 181 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKL SG V P E + EL E + GG+R G+ L PGG+ L + Sbjct: 182 TKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHL 240 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A M G+ ++G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W Sbjct: 241 D-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWS 299 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICA 392 ++++ + KG Q +I+ L + + G+T CA Sbjct: 300 VKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTFCA 334 >gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 565 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 141/383 (36%), Positives = 219/383 (57%), Gaps = 14/383 (3%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 +++ +D I+ +++ S LRGRGGAGF TG KW + D+ ++V NADE EPGT KDR Sbjct: 195 IKRDKDSILEDIEKSNLRGRGGAGFPTGFKWRLAKEEKKDK-KFIVCNADEGEPGTFKDR 253 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 I+ ++EG IA++ IGA FIY+RGE+ RE+L+ +++ +GLLG+ ++ Sbjct: 254 YILHKNFQRVLEGMSIAAYVIGASKGFIYLRGEYTYIRETLEKEIEKRRRAGLLGNETEK 313 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G + DI + GAGAYICGEETAL+ESLEGK+G+PR KPP+P + G PT VNNVE+ Sbjct: 314 GLNFDIEIRMGAGAYICGEETALIESLEGKRGEPRNKPPYPVDTGFMNYPTLVNNVETFL 373 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 V I +G + +G ++++GTK FSISG E +T D+++ + Sbjct: 374 NVNLICEKGVESFGQYGTDSSKGTKFFSISGDCKNEGIYELPFGVTIDKVV-----ALAE 428 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G D + AV GG++ C+ I ++ GS +I+ + + D++ Sbjct: 429 GKD-IKAVQIGGAAGECVQKNDFSKRIA-FEAASTGGS------IILFNENRDMLDIAEN 480 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F+ ESCGQCTPCREGT ++ + L KG ++ L E+ + +E + C LG Sbjct: 481 FMEFFVEESCGQCTPCREGTYRILEGIRLLKKGKCSVTYLNKLLELCETVELASKCGLGQ 540 Query: 396 AAAWPIQGLIKNFRPLIEERIDQ 418 + + +++NF+ I R+ + Sbjct: 541 LSTVAFRSIVENFKEEILGRLPE 563 >gi|126665578|ref|ZP_01736560.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17] gi|126630206|gb|EBA00822.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17] Length = 519 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 147/390 (37%), Positives = 219/390 (56%), Gaps = 3/390 (0%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + D ++ G + + K I++EVKASGLRGRGGA F G+KW + ++ Y Sbjct: 119 IEDYIAHGGFAGLKKAAALTTQGIVDEVKASGLRGRGGAAFPAGIKWQTVLDEPQNQQKY 178 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR +M +P+ LIEG IA A+GA FIYVR E++ ++ L A Sbjct: 179 VVCNADEGDSGTFADRLVMECDPYMLIEGMTIAGLAVGATLGFIYVRSEYLLSQKMLDEA 238 Query: 140 VDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + G LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 239 IRRAEVLGYLGDNVCGNGRSFRLEVRLGAGAYICGEETSLLESLEGKRGLVRSKPPLPAI 298 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNNV S+A VP I+ G Y+ +G + GT ++G++ + +E + Sbjct: 299 KGLFGQPTVVNNVLSLAAVPYIMAHGGKAYADYGMGRSLGTLPIQLAGNIKHGGLIELAF 358 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 + +++E GG G + AV GG + LP Q MDY+ ++G+G+G Sbjct: 359 GASLRKVLEDFGGGTFTGRP-MRAVQVGGPLMAYLPESQWD-TPMDYEAFAKLGAGIGHG 416 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 V+ D + D+ + F ESCG+CTPCR G+ + V++R+ G + + LL Sbjct: 417 GVVAFDDTVDMGEQARFAMEFCAVESCGKCTPCRIGSVRGVEVIDRIRAGEHRDDNLVLL 476 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 E+ + + ++CA+G +P+Q ++K+F Sbjct: 477 QELCETMVDGSLCAMGGMTPFPVQSVMKHF 506 >gi|146341846|ref|YP_001206894.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp. ORS278] gi|146194652|emb|CAL78677.1| Putative formate dehydrogenase beta subunit [Bradyrhizobium sp. ORS278] Length = 518 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 213/392 (54%), Gaps = 4/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + L D +I EV SGLRGRGGAGF TG+KW + + +DR Sbjct: 116 SLEDYRAHGGYKGLTRALTLSPDAVIAEVTTSGLRGRGGAGFPTGIKWKTVSQTAADR-K 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE + GT DR +M +P LIEG I A+GA +IY R E+ ++ Sbjct: 175 YVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATKGYIYTRSEYPHAIATMTK 234 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+D +GLLG S Y ++ V GAGAY+CGEETAL+ESLEGK+G R KPP PA Sbjct: 235 AIDIAKKAGLLGDKISGSNYTFELEVRTGAGAYVCGEETALMESLEGKRGIVRAKPPLPA 294 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+G PT VNN+ S A +P IL GA Y+ FG +RGT I+G+V + E + Sbjct: 295 HHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGTMPIQIAGNVKFGGLFETA 354 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL++ GG G + AV GG P + DY+ +G Sbjct: 355 FGITLGELVDDIGGGTFTGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAAKEGLIGH 412 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G+ ++++ +G I L Sbjct: 413 GGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGAETIDKIRRGERVAENIAL 472 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ ++ ++CALG +P+ +K+FR Sbjct: 473 VEDLCGTMKLGSLCALGGFTPYPVLSALKHFR 504 >gi|114705203|ref|ZP_01438111.1| putative nad-dependent formate dehydrogenase beta subunit protein [Fulvimarina pelagi HTCC2506] gi|114539988|gb|EAU43108.1| putative nad-dependent formate dehydrogenase beta subunit protein [Fulvimarina pelagi HTCC2506] Length = 517 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 216/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + +E G + I+ EVK SGLRGRGGAGF TG+KW + K + Sbjct: 116 SLEDYEAHGGLLGLRRAIEMGSEAIVEEVKESGLRGRGGAGFPTGIKWETVMKTEGPK-K 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA+ A GA +IY+R E+ ++ Sbjct: 175 YIVANADEGDSGTFADRMIMEGDPFCLIEGMTIAAVATGATKGYIYLRSEYPVAIRVMRE 234 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ G LG S LG + D+ V GAGAY+CGEET+LL+SLEGK+GQ R KPP P Sbjct: 235 AIKRAEDFGWLGI-SVLGSAHAFDLEVRVGAGAYVCGEETSLLDSLEGKRGQVRFKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV S+A P IL +GA Y FG +RGT I+G+V + E Sbjct: 294 AIKGLFGRPTVINNVISLASTPEILAKGAKVYKDFGIGRSRGTIPLQIAGNVKHGGLYEV 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +T E++E GG G + AV GG P + DY+ E +G Sbjct: 354 PFGLTLGEIVEGIAGGTNSG-KPVRAVQVGGPLGAYFPR-SLFDTPFDYEAFAEKKGLIG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 A +++ D + D++K F ESCG+CTPCR G + ME+++ G ++ Sbjct: 412 HAGIVIFDDTVDMMKQARFAFEFCAVESCGKCTPCRIGAVRGLETMEKIIAGDNAAESLE 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L+ ++ +E ++CALG +P+ I++F Sbjct: 472 LVEDLCNTMEFGSLCALGGFTPYPVMSAIRHF 503 >gi|224825580|ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] gi|224602501|gb|EEG08679.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] Length = 514 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 225/409 (55%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ SL+D + + + + L I+ EV SGLRGRGGA F Sbjct: 98 LKNQERLTFARVGITDPLSLADYQAHEGFAGLKRALSMDGAAIVQEVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 158 PTGIKWRTV-ALAEAAQKYVVCNADEGDSGTYSDRMVMEDDPFMLIEGMTIAGLAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + L A+ +G LG N G + V AGAY+CGEETA+L Sbjct: 217 GYIYVRSEYPHSFDVLNQAIRLAEDAGFLGENILASGKCFKLDVRKAAGAYVCGEETAML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA++Y+ +G ++GT Sbjct: 277 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVISLASVPVILARGAAFYADYGMGRSKGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ Y VE++ +T EL+ GG G + AV GG LP Q Sbjct: 337 LPFQLAGNLKYGGLVEKAFGLTLRELLHDFGGGSASGR-PIRAVQVGGPLGAYLPESQFD 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G ++ D + D+++ F ESCG+CTPCR G+ + Sbjct: 396 -TPLDYEAFAALGAVVGHGGIVAFDDTVDMVEQARYAMEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R+ K + ++I LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIQRIQKDEKRPQQIALLRDLCDTMLHGSLCAMGGMTPYPVLSALNHF 503 >gi|182413363|ref|YP_001818429.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] gi|177840577|gb|ACB74829.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] Length = 668 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 231/385 (60%), Gaps = 4/385 (1%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 ++G+ + E + +I E+KASGLRGRGGAGF T MKW +++ Y++ N Sbjct: 242 AQGYQALRKALFELTPEKVIGELKASGLRGRGGAGFPTWMKWQLTRAQPAEQ-RYVICNG 300 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE +PG DR ++ +PH+++EG ++A FA+GA + Y+R E+ + E ++ A+ + Sbjct: 301 DEGDPGAFMDRSVLESDPHSVLEGMILAGFAMGASRGYFYIRAEYPKAVERVERAIAQAR 360 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 +GLLG N G+ + + GAGA++CGEETAL+ S+EG++G P +PP+P+ GL+G Sbjct: 361 EAGLLGENILGSGFSFNAKIRLGAGAFVCGEETALIASIEGRRGSPSPRPPYPSVRGLWG 420 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT +NNVE++A +P IL RG +WY+G+G E ++GTK+F+++G V VE M T Sbjct: 421 RPTAINNVETLANIPAILLRGGAWYAGYGTEKSKGTKVFAVTGKVMNAQLVEVPMGTTLR 480 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 +++ + CGG+ + AV GG S +P + + Y+ L+++GS +G+ ++VM Sbjct: 481 QIVYEICGGVLDD-KEIKAVQTGGPSGGVIPEKHLDTPV-SYETLQQLGSIMGSGGMLVM 538 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D++ ++ F ESCG+C PCR G M+++++R+ +G ++ L + Sbjct: 539 DKNDSMVDVARFYLRFCVDESCGKCAPCRIGGYQMLQILDRISRGRGSAEDLVTLRRICT 598 Query: 384 NIEGRTICALGDAAAWPIQGLIKNF 408 ++ ++C LG A P+ ++ F Sbjct: 599 AMQKASLCGLGQTAPNPVLSTLRYF 623 >gi|144897650|emb|CAM74514.1| NADH dehydrogenase (quinone) [Magnetospirillum gryphiswaldense MSR-1] Length = 511 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 146/391 (37%), Positives = 222/391 (56%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S++D + G + +++ L I+ EV SGLRGRGGAGF TG+KW+ + S Sbjct: 119 SVADYRAHGGFAGLERALTLSPSEIVEEVTQSGLRGRGGAGFPTGIKWNTVLN-ASAAEK 177 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 ++ NADE + GT DR I+ +P LIEG IA+ A+GA ++Y+R E+ +L+ Sbjct: 178 FVCCNADEGDSGTFADRMIIEGDPFLLIEGMTIAALAVGARQGYVYLRSEYPHAVATLRE 237 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ Y LG+N G+D + V GAG+Y+CGEETA+LESLEGK+G R KPP PA Sbjct: 238 AIRRAYEQDWLGTNIHGSGHDFHLEVRVGAGSYVCGEETAMLESLEGKRGMVRAKPPIPA 297 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV ++ VP +L +GA++Y FG + GT+ F ++G++ VE + Sbjct: 298 LQGLFGQPTIVNNVLTLTSVPVVLAKGAAFYRDFGAGRSHGTQPFQLAGNIQRGGLVELA 357 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ +LI ++ GG G L AV GG +P M G DY+ + E G+ LG Sbjct: 358 FGVSLHDLIYRYGGGTASGRP-LRAVQVGGPLGAYVPE-SMLGLSADYESMAEAGAMLGH 415 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + + + F ESCG+CTPCR G+ V++++V G + L Sbjct: 416 GGIVVFDETVRMARMARFAMDFCAVESCGKCTPCRIGSTRGREVLDKIVAGENVADNMAL 475 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++CA+G A P+Q I++F Sbjct: 476 LDDLCTVMADGSLCAMGGLAPLPVQSAIRHF 506 >gi|219849354|ref|YP_002463787.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] gi|219543613|gb|ACL25351.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] Length = 535 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 229/375 (61%), Gaps = 4/375 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +IN + SGLRGRGGAG+ TG+KW+ + K +R +++ NADE +PG DR ++ +P Sbjct: 156 VINVITRSGLRGRGGAGYPTGLKWATVAKSPGER-KFVICNADEGDPGAFMDRSVLESDP 214 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG IA++A+GA FIYVRGE+ + LQ A+ + GLLG+ + G++ I Sbjct: 215 HLVLEGMAIAAYAVGAEQGFIYVRGEYPLAIDRLQKAIVQARRLGLLGAQIFESGFNFRI 274 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGA++CGEETAL+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A + I+ Sbjct: 275 DIRVGAGAFVCGEETALIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANITAII 334 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G W++ G E ++GTK+F+++G + +E M IT E++E+ GG G + Sbjct: 335 ENGPEWFANIGTEKSKGTKIFALTGKIRNTGLIEVPMGITLREIVEEIGGGTPDG-SPVK 393 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+PA + DY+ L +GS +G+ ++VMD T+++ F K Sbjct: 394 AVQTGGPSGGCIPASLFDTPV-DYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEFCK 452 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+C PCR GT + ++ ++ G A+ ++ + E+ + + ++C LG +A P+ Sbjct: 453 EESCGKCIPCRVGTVQLFNMLTKVRNGQAKGSDLVKIEELCELMRETSLCGLGQSAPNPV 512 Query: 402 QGLIKNFRPLIEERI 416 + FR E+ I Sbjct: 513 LSTLHYFRHEYEQLI 527 >gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] Length = 635 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/399 (38%), Positives = 238/399 (59%), Gaps = 9/399 (2%) Query: 15 LQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++R G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K Sbjct: 164 IDSENIEEYIAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGGGFPTGLKWEFASKQV 223 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 S+ Y+V NADE +PG DR IM +PH+++E I ++IG+ +Y+R E+ Sbjct: 224 SNV-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAI 282 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L+ A+++ GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P L Sbjct: 283 NRLKKAIEQAREYGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTL 341 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N Sbjct: 342 KPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSKGTKVFALAGKINNV 401 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E+I + GG G AV GG S CL + I D+D L Sbjct: 402 GLIEVPMGTTLREVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAA 459 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS +G+ +IVMD D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G Sbjct: 460 GSMMGSGGMIVMDED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRG 518 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++++D L + + I+ +C LG + P+ + NFR Sbjct: 519 TEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFR 557 >gi|148254529|ref|YP_001239114.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp. BTAi1] gi|146406702|gb|ABQ35208.1| formate dehydrogenase beta subunit [Bradyrhizobium sp. BTAi1] Length = 518 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 213/392 (54%), Gaps = 4/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + L D +I EV SGLRGRGGAGF TG+KW + + +DR Sbjct: 116 SLDDYRAHGGYKGLTRALTLTPDAVIAEVTTSGLRGRGGAGFPTGIKWKTVSQTAADR-K 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ NADE + GT DR +M +P LIEG I A+GA +IY R E+ ++ Sbjct: 175 YVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATKGYIYTRSEYPHAIATMAK 234 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ +GLLG + Y D+ V GAGAY+CGEETAL+ESLEGK+G R KPP PA Sbjct: 235 AIEIAKKAGLLGDKIAGSNYTFDLEVRTGAGAYVCGEETALMESLEGKRGVVRAKPPLPA 294 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+G PT VNN+ S A +P IL GA Y+ FG +RGT I+G+V + E + Sbjct: 295 HHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGTMPIQIAGNVKFGGLFETA 354 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL++ GG G + AV GG P + DY+ +G Sbjct: 355 FGITLGELVDDIGGGTFTGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAAKDGLIGH 412 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G+ ++++ +G I L Sbjct: 413 GGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGAETIDKIRRGERVAENIAL 472 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ ++ ++CALG +P+ +K+FR Sbjct: 473 VEDLCGTMKLGSLCALGGFTPYPVLSALKHFR 504 >gi|262275220|ref|ZP_06053030.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia hollisae CIP 101886] gi|262220465|gb|EEY71780.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia hollisae CIP 101886] Length = 530 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 149/414 (35%), Positives = 231/414 (55%), Gaps = 13/414 (3%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L QDR+ F + + + D S+G +D + + L +++EVKASGLRGRGGA F Sbjct: 106 LKRQDRLTFERVGVVDPLDVEDYCSKGGFDGLKRALTMTTQEMLDEVKASGLRGRGGAAF 165 Query: 61 STGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 TG+KW + +D+P Y++ NADE + GT DR +M +P TLIEG +I + ++G Sbjct: 166 PTGIKW----QTVADQPSGQKYVICNADEGDSGTFADRMLMEGDPLTLIEGMIICALSVG 221 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A ++Y R E+ + A++ YA+G LG + G D+ + GAGAYICGEET Sbjct: 222 ASQGYVYTRSEYPNACKIFTKAIENAYAAGYLGPDICGSGKHFDLELRMGAGAYICGEET 281 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 +L+ESLEGK+G R KPP PA GL+G PT +NNV S+A VP I +GA Y FG+ + Sbjct: 282 SLMESLEGKRGLVRNKPPLPAIEGLFGRPTVINNVISLASVPIIFSKGADHYKDFGQGRS 341 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GT ++G++ P E + +T EL+ GG + G N L + G + A Sbjct: 342 LGTMPIQLAGNIKRPGLFELAFGVTIRELLFDFGGGSKTG--NPLKAVQIGGPLGAYIAE 399 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ L G+ LG ++ D TD+ + F ESCG+CTPCR G Sbjct: 400 KDWDTELDYEHLAARGAMLGHGGIVAFDEQTDMSQMARFAMEFCALESCGKCTPCRIGAV 459 Query: 357 WMMRVMERLVKGIAQKREID--LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V+++L++ ++ LL ++ + +E ++CA+G +P++ +K+F Sbjct: 460 RGVEVIDQLLRTTGDEKSAHKALLDDLCETMEQGSLCAMGGMTPFPVKSALKHF 513 >gi|307823547|ref|ZP_07653776.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96] gi|307735532|gb|EFO06380.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96] Length = 517 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 213/392 (54%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SL+D + + + L ++ I+ V SGLRGRGGA F TG+KW + S + Sbjct: 116 SSLTDYIDNDGYRGLKNALAMTQEQIVQAVTDSGLRGRGGAAFPTGIKWKTVLNTASLQ- 174 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE + GT DR +M +P LIEG IA A+ A +IY+R E+ E L Sbjct: 175 KYIICNADEGDSGTFSDRMVMEGDPFVLIEGMTIAGLAVDATQGYIYLRIEYPHAFEVLN 234 Query: 138 AAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA+ Y G LG N + G ++ V GAGAY+CGEET+L+ESLEGK+G R KPP P Sbjct: 235 AAIATAYQEGYLGENIQGSGKTFNLEVRLGAGAYVCGEETSLMESLEGKRGLVRFKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT VNNV S+A +P IL +G +Y FG +RGT ++G++ P VE Sbjct: 295 AISGLFGQPTVVNNVISLASIPVILNKGGDYYRDFGMGRSRGTLPVQLAGNIKRPGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +T EL+ GG G + AV GG LP Q +DY+ + + +G Sbjct: 355 GFGLTLRELLYDFGGGAASGRP-IRAVQVGGPLGAYLPESQFD-TPLDYEAFAAIWAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 ++V D + ++ + F K ESCG+CTPCR G+ + VM+ ++ G + I Sbjct: 413 HGGIVVFDDTVNMAEMARYSMEFCKIESCGKCTPCRIGSTRGVEVMDDIINGRNLDKNIP 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CALG +P+ + +F Sbjct: 473 LLRDLCDTLLNGSLCALGGMTPYPVLSALNHF 504 >gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] Length = 592 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/406 (36%), Positives = 230/406 (56%), Gaps = 5/406 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + R+ N + +++ D + + +K I E ++++I + SGLRGRGG GF TG Sbjct: 112 ERRVLKNCGVIDPENIDDFLRNDGYKAAEKAISEMTKEFVIKNIIDSGLRGRGGGGFPTG 171 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW K +++ Y+V NADE +PG DR I+ +PH++IEG +IA +AIGA + Sbjct: 172 IKWDIASKNHAEQ-KYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKGLV 230 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ L A+ G LG N ++ DI + GAGA++CGEETAL+ S+ Sbjct: 231 YIRAEYPLAISRLDKAIVSARKRGYLGKNLFGTDFEFDIEIKFGAGAFVCGEETALIHSM 290 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G+P KPP+PA G + PT VNNVE++ VP I+ G W+ G E + GTK+F Sbjct: 291 EGKRGEPTSKPPYPAEKGFWDMPTVVNNVETLVNVPRIILNGVEWFREVGTEKSPGTKVF 350 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ++SG +N VE M I+ E+I + GI+GG AV GG S CL + I Sbjct: 351 ALSGKINNVGLVEVPMGISLREIIFEIGEGIKGG-KKFKAVQTGGPSGGCLNEEDLDTPI 409 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 D+D L G+ +G+ ++VMD ++ F ESCG+CTPCR G + ++ Sbjct: 410 -DFDSLASKGAIMGSGGMVVMDEDDCMVSVAKFFLEFTLDESCGKCTPCRIGNTRLYEIL 468 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +R+ KG + ++ LL E+S+ I+ ++C LG +A P+ + F Sbjct: 469 DRITKGKGKLEDLALLKELSECIKATSLCGLGQTSANPVLSTLNKF 514 >gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 617 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/414 (36%), Positives = 240/414 (57%), Gaps = 15/414 (3%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 T + L + +SL D ++ G + + KIL + + +I++V+ SGLRGRGG GF Sbjct: 134 TQNPLVLRKLDAIDPESLDDYLALGGYRTLRKILFQMTPERVIDQVEKSGLRGRGGGGFL 193 Query: 62 TGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 TG KW ++C P +++ N DE +PG DR +M +PH +IEG ++ ++AIGA Sbjct: 194 TGRKW----RLCRQVPGEVKFIICNGDEGDPGAFMDRAVMEGDPHAVIEGLIVGAYAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEE 175 +IYVR E+ + L AV++ G LG+N SK +D+ I GAGA++CGEE Sbjct: 250 LKGYIYVRHEYPLAVKRLTRAVEQARDFGFLGTNILRSKFSFDIKI--SQGAGAFVCGEE 307 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EG+ G+P +PP+P GL+G PT +NNVE++A +P I+ GA ++ G E Sbjct: 308 TALIASIEGRIGEPMPRPPYPIQAGLFGLPTVINNVETLANIPEIINLGAEHFAALGTEK 367 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+FS+ G VN +E M + ++ GGI G + AV GG S C+P Sbjct: 368 SKGTKVFSLVGAVNNTGLLEVPMGTSLRHIVYDLGGGIPGNHE-FKAVQTGGPSGGCIPK 426 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 Q +DYD L+++GS +G+ +IVMD + ++ F ESCG+CTPCREG Sbjct: 427 -QFLDLPVDYDSLQQVGSIMGSGGMIVMDTKSCMVDVARYFISFLMQESCGKCTPCREGL 485 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ + G +++ + ++ ++ + + ++C LG +AA P+ +K FR Sbjct: 486 KQLHAILTDITSGRGEEKHLAMMEDLCRTMASASLCGLGQSAANPVLSTLKYFR 539 >gi|209551211|ref|YP_002283128.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536967|gb|ACI56902.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 518 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 214/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL+D S G + + + ++ EV SGLRGRGGAGF TG+KW + DR Sbjct: 117 SLADYESHGGLAGLRRAVSMTSAEVVKEVTDSGLRGRGGAGFPTGIKWKTVLDAVGDR-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A GA ++Y R E+ ++ A Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGATKGYVYTRSEYPHAIAAMTA 235 Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV +G+LG S G DI V GAGAY+CGEETALL SLEGK+G R KPP PA Sbjct: 236 AVGIARQAGILGLSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+ CPT +NNV S+A VP I+ +GA++Y FG +RGT I+G+V Y E + Sbjct: 296 HKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYAGLYETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ +++++ GG G + AV GG P + DY+ +G Sbjct: 356 FGLSLGDIVDRIGGGTATGR-PVKAVQVGGPLGAYFPR-ALFDTPFDYEAFAAKDGLIGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D++K F ESCG+CTPCR G+ + +++ GI ++ L Sbjct: 414 AGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRAL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ ++ ++CALG +P+ + +F Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504 >gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF [Desulfatibacillum alkenivorans AK-01] Length = 633 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/406 (36%), Positives = 232/406 (57%), Gaps = 6/406 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + D ++ G + + K L + ++ EV+ SG+RGRGGAGF G KW Sbjct: 152 VLKNIGTIDPTDIYDYIAVGGYQALAKALTTMTPEQVLEEVEKSGIRGRGGAGFPAGRKW 211 Query: 67 --SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 + K ++P Y+VVN DE +PG D +M +PH ++EG ++ ++A+G+ ++Y Sbjct: 212 RGAVQAKERKNQPLYVVVNGDEGDPGAFMDGSVMEGDPHAVLEGLILGAYAMGSEKGYMY 271 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 VR E+ + L+ A+ GLLG N G+ D ++ GAGA++CGE TAL S+E Sbjct: 272 VRAEYPLAIQHLEMAMAAARELGLLGDNILNTGFCFDAQINRGAGAFVCGESTALFTSIE 331 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK G+PR K GL+GCPT +NNVE+ A +P I+ +GA WY+ G NN GTK+FS Sbjct: 332 GKAGEPRPKYVRSVEEGLWGCPTVLNNVETWANIPKIIDKGAEWYASIGSPNNTGTKVFS 391 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 + G VN VE + + +IE GGI GG + AV GG S C+P + + A + Sbjct: 392 LVGKVNNVGLVEVPLGTSLSTIIEDIGGGIPGGGE-FKAVQTGGPSGGCIPY-KHKDAPV 449 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L ++GS +G+ +IVMD+ ++ F + ESCG+C PCR G M +++ Sbjct: 450 DYDSLTKLGSMMGSGGMIVMDKRDCVVDVARYFLKFLEEESCGKCNPCRLGLTRMREILD 509 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 KG +++I+ L ++ +I+ +CALG +A P+ + F+ Sbjct: 510 DFSKGCGSEQDIEDLMSLATSIQDGALCALGTSAPNPVLTTLHFFK 555 >gi|317404656|gb|EFV85052.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter xylosoxidans C54] Length = 523 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 151/410 (36%), Positives = 229/410 (55%), Gaps = 6/410 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G + + L I+ E+ SGLRGRGGA F Sbjct: 101 LKQQERLTFARVGVIDPLSLQDYAAHGGLQGLKRALAMEPAAIVEEMVTSGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +DR Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVLGSPADR-KYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA++ G LG + G D+ V GAGAYICGEET+LL Sbjct: 220 GYIYVRSEYPHAIATLEAAIERARGVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S+A VP IL +GA++Y +G + GT Sbjct: 280 ESIEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ ++ +L+ GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLSLRDLLYTFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D S D+ + F ESCG+CTPCR G+ + Sbjct: 399 -VPLDYEAYVQISAMIGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVK-GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++++ G +++++ LL ++ + G ++CALG A +P+ + +F Sbjct: 458 ETIDKITAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHF 507 >gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 436 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 208/348 (59%), Gaps = 8/348 (2%) Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++ NADE +PG D I+ +PH +IEG +IA+++IG+ +IYVR E+ + L+ Sbjct: 29 KYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQGYIYVRAEYPLAIKRLE 88 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+D+ G LG ++++I V GAGA++CGEETAL+ S+EGK+G PR KPP Sbjct: 89 KAIDQAKQYGFLGKEMFGEVFSFNIEIKV--GAGAFVCGEETALIASIEGKRGMPRSKPP 146 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GL+G PT +NNVE+ A +P I+ RGA ++ G + ++GTK+FS++G + V Sbjct: 147 FPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTKVFSLTGKIENTGLV 206 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M I+ E+I GG+ AV GG S CL ++ + DYD L ++G+ Sbjct: 207 EVPMGISMKEIIYDIGGGVPNNR-KFKAVQIGGPSGGCLTEEKLDLPV-DYDSLLQVGAI 264 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ ++VMD ++ F ESCG+CTPC EGT M+ ++E++V G A+ + Sbjct: 265 MGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLEILEKIVNGRAKIED 324 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +D L ++K I+ +C LG AA PI +K FR EE I +Y +C Sbjct: 325 LDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYKKC 371 >gi|293607184|ref|ZP_06689526.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553] gi|292814518|gb|EFF73657.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553] Length = 530 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 154/413 (37%), Positives = 231/413 (55%), Gaps = 9/413 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G + + L II+E+ SGLRGRGGA F Sbjct: 105 LKQQERLTFARVGVIDPLSLQDYAAHGGLAGLKRALAMDPAHIIDEMVTSGLRGRGGAAF 164 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + ++ Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 165 PTGIKWKTVAGTPGEQ-KYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 223 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ E+L+AA+ A G LG++ G D+ V GAGAYICGEET+LL Sbjct: 224 GYIYVRSEYPHAIETLEAAIVRARAVGWLGADVHGSGRRFDLEVRKGAGAYICGEETSLL 283 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL +GA++Y +G + GT Sbjct: 284 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 343 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE++ ++ EL+ GG G L AV GG LP Q Sbjct: 344 LPFQLAGNVKQGGLVEKAFGLSLRELLYDFGGGSATG-RPLRAVQVGGPLGAYLPESQWD 402 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D + D+ + F ESCG+CTPCR G+ + Sbjct: 403 -VPLDYEAYIQISAMIGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461 Query: 360 RVMERLVKGIA----QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++++ A +++++ LL ++ + G ++CALG A +P+ + +F Sbjct: 462 ETIDKIAASGANPAQREQQVHLLRDLCDTMMGGSLCALGGMAPYPVLSALNHF 514 >gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus S110] gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus S110] Length = 612 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 217/374 (58%), Gaps = 21/374 (5%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKD 94 E+ + II ++ SGLRG GGAGF G KW ++ D+P + VN DE EPGT KD Sbjct: 253 EEDAEAIIKTMEDSGLRGLGGAGFPAGRKW----RIVRDQPAPRLMAVNIDEGEPGTFKD 308 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 R + +PH +EG V+A+ +G +IY+R E+ R L+ + A Sbjct: 309 RTYLERDPHRFLEGLVVAAQIVGIEQCYIYLRDEYHDCRALLETELARLQADPPCALPR- 367 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT +N E++ Sbjct: 368 ------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETL 421 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 V I+ +GA+W+SGFGR +G + FS+SG V +P IT ELI+++CGG+ Sbjct: 422 YWVRDIVEKGAAWFSGFGRHGRKGLRSFSVSGRVKHPGVKLAPAGITVQELIDEYCGGML 481 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G +L A +PGG+S LPA +M +D+D L+ G +G+AAV+V+ + A Sbjct: 482 DG-HSLYAYLPGGASGGILPA-RMNDIPLDFDTLQPYGCFIGSAAVMVLSQHDRARDAAL 539 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 + F++HESCGQCTPCR GT +M V A L ++++ + +IC LG Sbjct: 540 NVMRFFEHESCGQCTPCRVGTAKAAALMHAPVWDNAT------LEDLAQVMGDASICGLG 593 Query: 395 DAAAWPIQGLIKNF 408 AA PI+ + + F Sbjct: 594 QAAPNPIRCIQQYF 607 >gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] Length = 628 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 218/368 (59%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHE 101 +I+E+K SGLRGRGGAGF TG+KW+ + H Y+V NADE +PG DR ++ + Sbjct: 185 VIDEMKKSGLRGRGGAGFPTGLKWAAAAENPRLNGHKYIVCNADEGDPGAFMDRSLLEGD 244 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 PH+++E IA +A + +IY+R E+ E L+ A+ + +G+LG N G++ Sbjct: 245 PHSVLEAMAIAGYATDSDMGYIYIRAEYPLAIERLKIAIAQAEEAGVLGENILGTGFNFK 304 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + +GAGA++CGE TAL++S+EG +G+P + FP GL+ PTTVNNVE+ +P I Sbjct: 305 IELKYGAGAFVCGEGTALIKSIEGNRGEPIVNKYFPTEHGLWQAPTTVNNVETFGNIPAI 364 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + +GA W++ FG E+++GTK+F++ G VN VE M T E++ + GGI GG + Sbjct: 365 INKGADWFASFGTEDSKGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPGGKE-F 423 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S C+ + + I D+ L +GS +G+ ++V+D + ++ F Sbjct: 424 KAVQTGGPSGGCISSKDLDTPI-DFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFT 482 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+CTPCR G ++ ++ ++ +G + ++ L ++ I+ ++C LG A P Sbjct: 483 VDESCGKCTPCRIGNRRLLEILNKICRGNGTEEDLVNLKSLATIIKNTSLCGLGKCAPNP 542 Query: 401 IQGLIKNF 408 + + F Sbjct: 543 VLSTLNCF 550 >gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725] gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis 2002] gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725] gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis 2002] Length = 598 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 156/410 (38%), Positives = 242/410 (59%), Gaps = 6/410 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++ + + K+L E + +I+ VK SGLRGRGG GF TG+KW F K Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ ++YVR E+ Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + L+ A+++ GLLG N G++ DI + GAGA++CGEETAL+ S+EG +G+PR + Sbjct: 245 KRLEIAIEQARQYGLLGKNILGTGFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRPR 304 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++GTK+F++ G VN Sbjct: 305 PPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNTG 364 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 +E M T E++E GG G AV GG S C+PA M I D+D L +G Sbjct: 365 LIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTALG 422 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + +G+ +IVMD T ++ F ESCG+C PCR GT M+ +++++ G + Sbjct: 423 TMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGTE 482 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +++ L E++ +I+ +C LG A P+ ++ FR E + + RC Sbjct: 483 EDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531 >gi|281357444|ref|ZP_06243932.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281316047|gb|EFB00073.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 573 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 227/393 (57%), Gaps = 12/393 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S D ++ + ++K L +++EVK SGLRGRGG GF TG KW F+ +D Sbjct: 112 SFEDYVAHDGYKGLEKALAMTSQQVVDEVKLSGLRGRGGGGFPTGNKWGFLAAKQADE-K 170 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 L+ NADE +PG DR +M PH ++EG +IA++A GA FIY R E+ + L+ Sbjct: 171 ILICNADEGDPGAFMDRSLMESAPHQVLEGMLIAAYATGATKLFIYCRAEYPMAIKHLKI 230 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ + Y L N G +++II+ GAGA++CGEETAL+ SLEG++G PR +PPFP + Sbjct: 231 AIAQIYEHKL---NVVNGRELEIIIKEGAGAFVCGEETALIASLEGQRGTPRFRPPFPTD 287 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 G G P+ +NNVE+ VP ILR GA+ ++ G E ++GTKLF+++G + +P VE M Sbjct: 288 KGWMGHPSMINNVETFGNVPLILREGAAAFASVGTEGSKGTKLFALAGDLKHPGLVEVPM 347 Query: 259 SITFDELIEKHCGGIRGGWD--NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T E++ GG D + AV GG S C+P ++ +DYD L+++G+ +G Sbjct: 348 GTTLREIVFDI-----GGADPEKVKAVQTGGPSGGCIPV-ELFDTPVDYDSLRKLGAIMG 401 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + +IV+ + +++ F ESCG+CT CR GT M +ER+V G ++ Sbjct: 402 SGGMIVIGKDRCMVETARYFLDFTHRESCGKCTFCRVGTTRMYETLERIVAGKGSMEDLA 461 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 LL ++ I ++C LG A P+ ++ +R Sbjct: 462 LLEDLGPKIRMGSLCGLGQTAPNPVLATLRYYR 494 >gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] Length = 628 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 161/425 (37%), Positives = 240/425 (56%), Gaps = 15/425 (3%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N L +++ + ++R ++ + K L E +I+E+K SGLRGRGG GF T Sbjct: 145 QQRIALKNCGQLDPENIREYIARDGYEALAKALHEMQPQEVIDEIKKSGLRGRGGGGFPT 204 Query: 63 GMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 G+KW F +D+P Y++ NADE +PG DR I+ +PH ++E IA +AIGA Sbjct: 205 GVKWQFA----ADQPAGDKYVICNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGAQ 260 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177 ++Y+R E+ + LQ A+++ GL G + LG D DI + GAGA++CGEETA Sbjct: 261 QGYVYIRAEYPIAVKRLQIAIEQAKELGLFGEHI-LGTDFSFDIEIRLGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EGK+G P KPPFPA G++G PT +NNVE+ A V I+ +G+ W+S G E ++ Sbjct: 320 LIQSIEGKRGMPVPKPPFPAVSGVWGKPTIINNVETYANVAQIILKGSGWFSAIGTEKSK 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + VE M T E+I + GG G AV GG S CL Sbjct: 380 GTKVFALGGKIVNTGLVEIPMGTTLREVIYEIGGGCPNG-KKFKAVQTGGPSGGCLTVED 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + I D+D L +GS +G+ +IV+D ++ F ESCG+CTPCR GT Sbjct: 439 LDTPI-DFDNLIALGSMMGSGGMIVLDEDNCMVDVARFYMEFIVDESCGKCTPCRVGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ + +G +D L + K I+ +C LG AA P+ ++ FR E + Sbjct: 498 MLELLTDICEGRGTMETLDELETLGKMIKDTALCGLGQTAANPVLSTLRLFRDEYEAHVK 557 Query: 418 QYHRC 422 + RC Sbjct: 558 E-KRC 561 >gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] Length = 600 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 211/371 (56%), Gaps = 8/371 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 +I+E+ ASGLRGRGGAGF TG KW F V D ++ NADE +PG DR ++ + Sbjct: 156 VIDEILASGLRGRGGAGFPTGRKWQFTHDAVSPDGVKFVCCNADEGDPGAFMDRSVLEGD 215 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYD 158 PH++IE IA + IGA +IYVR E+ + L+ A+ + GLLG N S ++ Sbjct: 216 PHSVIEAMAIAGYCIGAQQGYIYVRAEYPIAVKRLEIAIKQAKEYGLLGDNIFGSDFSFN 275 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +++ GAGA++CGEETAL+ S+EGK+G+P +PPFPAN GL+ PT +NNVE+ A + Sbjct: 276 LEL--RLGAGAFVCGEETALMTSIEGKRGEPHPRPPFPANKGLFERPTLLNNVETYANIT 333 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL GA ++ G + GTK+F++ G + VE M +IE GG G Sbjct: 334 WILNHGADKFAAIGTPKSTGTKVFALGGKITNTGLVEIPMGTPLRTVIEDIGGGCPNG-K 392 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 A GG S C+PA + MDYD L +GS +G+ +IVMD ++ Sbjct: 393 KFKAAQTGGPSGGCIPA-SLIDTPMDYDSLGAIGSMMGSGGLIVMDEDNCMVDIAKFFLE 451 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F ESCG+C+ CR GT ++ ++ ++ +G ++D + E+ +++ +C LG A Sbjct: 452 FIVDESCGKCSVCRIGTKRLLGLLTKITEGEGTLEDLDTIEELCYHLKSSALCGLGQTAP 511 Query: 399 WPIQGLIKNFR 409 P+ +K+FR Sbjct: 512 NPVLSTLKHFR 522 >gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] Length = 606 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/407 (35%), Positives = 230/407 (56%), Gaps = 7/407 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +++ D + G ++ + K + D II+EV+ SGLRGRGGAGF G KW + P Sbjct: 127 ENIEDYLKEGGYEALKKAVSMTSDEIISEVEKSGLRGRGGAGFPAGRKWRTAASY-ENFP 185 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ N DE +PG DR I+ +PH +IEG IA+ A+GA F Y+R E+ ++ Sbjct: 186 KYVACNGDEGDPGAFMDRSILEGDPHCVIEGLAIAAVAVGAEEGFFYIRDEYDLAVRHVK 245 Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ A G++G S +G + +++ V G GA++CGE TAL+ S+EG+ G+PR K Sbjct: 246 KAIEDAKARGIIG-ESVMGSSHRLELSVVRGGGAFVCGESTALMASIEGRVGEPRAKYIR 304 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 GL+ PT +NNVE++A +P I+++G ++ G E + GTK+F++ G V VE Sbjct: 305 SVQRGLWNQPTVLNNVETLANIPVIIKKGGEAFADIGTEGSSGTKVFALVGKVKRTGLVE 364 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T LI GGI AV GG S C+P M +D+D L + G+ + Sbjct: 365 VPMGTTLRHLIYDIGGGILNNR-AFKAVQTGGPSGGCIPE-SMLDLEVDFDSLAKYGAMM 422 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD + +++ + F ESCG+CTPCREG M+ ++ + +G ++ +I Sbjct: 423 GSGGMIVMDDRSCMVEVARYYTNFLCEESCGKCTPCREGLRRMLEILTDICEGRGREGDI 482 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +LL + + ++ ++C+LG AA P+ I+ FR E I + RC Sbjct: 483 ELLERLGRAMQDASLCSLGKTAANPVLTTIQYFREEYEAHIRE-KRC 528 >gi|323139483|ref|ZP_08074531.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242] gi|322395285|gb|EFX97838.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242] Length = 517 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 152/406 (37%), Positives = 225/406 (55%), Gaps = 5/406 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q+RI F + S+++ + G + + + G I EV SGLRGRGGAGF TG Sbjct: 101 QNRITFARCGVIDPLSIAEYEAHGGGAGLARAFQIGPAATIEEVAKSGLRGRGGAGFPTG 160 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + +D+ Y+VVNADE + GT DR IM +P +LIEG +I +AI ++ Sbjct: 161 IKWKTVADAPADQ-RYVVVNADEGDSGTFADRMIMEGDPLSLIEGMIICGYAINGTKGYV 219 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + QAA+D +G LG N + G+ DI + GAGAY+CGEET+LLESL Sbjct: 220 YLRSEYPVAAKVFQAAIDVARKAGWLGDNVRGSGFKFDIELRIGAGAYVCGEETSLLESL 279 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA+ GL+G PT VNNV S+A P IL +GA Y+ G +RGT Sbjct: 280 EGKRGIVRAKPPLPAHEGLFGKPTVVNNVLSMATTPMILEKGAQHYADLGVGRSRGTMPL 339 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 I+G+V Y E I E++ GG R G + AV GG +P + Sbjct: 340 QIAGNVKYGGLFETDFGIPLGEIVNDIAGGTRSG-RPVRAVQVGGPLGAYVPV-SLFDLP 397 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DY+ S +G +++ D + D+ F ESCG+CTPCR G+ + + Sbjct: 398 FDYEAFAAKDSLIGHGGLVIFDDTVDMAWMARFGMEFCAIESCGKCTPCRIGSTRGVETI 457 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ KG + I+LL ++ ++ ++CALG A +P++ +++F Sbjct: 458 DKIRKGENVEANIELLKDLCHTMKFGSLCALGGFAPYPVESALRHF 503 >gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909] gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1] gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909] gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1] Length = 606 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 226/376 (60%), Gaps = 4/376 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E + +I EVK SGLRGRGG GF+TG+KW F K SD+ Y+ NADE +PG D Sbjct: 147 LTEMTPEQVIEEVKKSGLRGRGGGGFTTGLKWEFTYKSKSDK-KYVACNADEGDPGAFMD 205 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R I+ +PH+++E +A +AIGA +IYVR E+ + L A+++ GLLG Sbjct: 206 RSILEGDPHSVLEAMALAGYAIGADTGYIYVRAEYPIAVKRLSIAIEQAREYGLLGHGIF 265 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 ++ DI + GAGA++CGEETAL+ES+EGK+G PR +PPFPA G++G PT +NNVE+ Sbjct: 266 GTDFNFDIELRLGAGAFVCGEETALIESIEGKRGMPRPRPPFPAVKGVWGKPTLLNNVET 325 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A VP I+ +G W++ G E ++GTK+F++ G +N VE M T E+I GGI Sbjct: 326 YANVPLIILKGGEWFARIGTEKSKGTKVFALGGKINNTGLVEIPMGTTLKEVIYGIGGGI 385 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G A GG S CL ++ +D+D L ++GS +G+ +I+MD ++ Sbjct: 386 PNG-KKFKAAQTGGPSGGCLTE-ELLDTEIDFDNLVKLGSMMGSGGMIIMDEDNCMVDIA 443 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F ESCG+CTPCREGT MM ++ R+ +G + ++D L +++ I+ ++C L Sbjct: 444 RFYLDFTCDESCGKCTPCREGTKRMMEILNRITEGKGELSDLDELEHLAEYIKSSSLCGL 503 Query: 394 GDAAAWPIQGLIKNFR 409 G A P+ + +F+ Sbjct: 504 GQTAPNPVLSTLSHFK 519 >gi|288818981|ref|YP_003433329.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter thermophilus TK-6] gi|288788381|dbj|BAI70128.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter thermophilus TK-6] gi|308752566|gb|ADO46049.1| formate dehydrogenase beta subunit [Hydrogenobacter thermophilus TK-6] Length = 521 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 152/378 (40%), Positives = 217/378 (57%), Gaps = 4/378 (1%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + K L+ + IINE+K SGLRGRGGAGF TG+KW + K S+ Y+V NADE + GT Sbjct: 133 LKKALDMKPEDIINEIKRSGLRGRGGAGFPTGIKWETVLKTPSEE-KYIVCNADEGDSGT 191 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 DR IM +P LIE IA A+GA +IY+R E+ +E LQ A++ G LG Sbjct: 192 FSDRMIMECDPFLLIEAMTIAGLAVGARRGYIYLRSEYPLAKEVLQEAINIACDRGYLGD 251 Query: 152 N-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 + G +I ++ GAGAY+CGEETALLESLEGK+G R +PP PA GL+G PT VNN Sbjct: 252 DIMGSGKSFEIELYVGAGAYVCGEETALLESLEGKRGIVRPRPPVPAVSGLWGKPTIVNN 311 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270 V ++A VP I+R G Y+ +G + ++GT +SG+V VE T ELI Sbjct: 312 VVTLATVPWIIREGGENYASYGTDRSKGTLPVQLSGNVKRGGLVEIPFGTTLRELIYDFG 371 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GG G + AV GG LP + I DY+ +++G LG ++V D + D+ Sbjct: 372 GGTYSG-RPVKAVQVGGPLGAYLPESMLDIPI-DYEAFQKVGGILGHGGIVVFDDTVDLW 429 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 + F ESCG+CTPCR G+ + V+++L+K + + LL ++ + ++ Sbjct: 430 YMMRFAMEFCARESCGKCTPCRIGSQRGVEVIDKLMKDGTNGKLLTLLEDLMDVMMHTSL 489 Query: 391 CALGDAAAWPIQGLIKNF 408 C LG A +P+ +++NF Sbjct: 490 CGLGGMAPYPVLSILRNF 507 >gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 152/422 (36%), Positives = 236/422 (55%), Gaps = 7/422 (1%) Query: 4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFS 61 +Q+R + N + +S+ D ++ G + + K L ++ EVK + LRGRGGAGF Sbjct: 134 NQERNVICNNIKIDSRSIDDYLANGGYSALGKALGSMTPVQVLEEVKKANLRGRGGAGFP 193 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KW + D Y++VNADE +PG DR ++ PH+++EG ++ +AIGA Sbjct: 194 AGVKWEGS-RNAPDPVKYVIVNADEGDPGAFMDRALLEGNPHSILEGLILGGYAIGAPEG 252 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ E++ A+ + GLLG N GY + V+ GAGA++CGE TAL+ Sbjct: 253 YIYVRHEYPLAVENITLAIQQAQTYGLLGENILGSGYSFRVYVNQGAGAFVCGESTALMT 312 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG+ G+PR K VGL+G PT +NNVE+ A VP I+ RGA W++ G E+++GTK Sbjct: 313 SIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINRGADWFTSIGTESSKGTK 372 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G + VE M I+ +++ K GG G A+ GG S C+P + Sbjct: 373 IFSLVGKIANTGLVEVPMGISLRDIVYKI-GGGIPGGKKFKAIQTGGPSGGCIPESLLDL 431 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + +D L GS +G+ +I MD T ++ F ESCG+C PCREG M Sbjct: 432 PV-GFDELTAAGSMMGSGGMIAMDEDTCMVDTARYFIKFLTDESCGKCVPCREGLRQMDN 490 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G ++ +I+LL +++ + +CALG +A P ++ FR E I + Sbjct: 491 ILTRITEGKGREGDIELLEALAETAQEAALCALGKSAPNPFLSTLQYFRDEYEAHIRE-K 549 Query: 421 RC 422 RC Sbjct: 550 RC 551 >gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] Length = 603 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 207/379 (54%), Gaps = 22/379 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99 II +KASGLRGRGGAGF TG+KW + C D P HY+V NADE EPGT KDR ++ Sbjct: 207 IIEPIKASGLRGRGGAGFPTGLKW----EACRDAPGSEHYVVCNADEGEPGTFKDRVLLN 262 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGY 157 + EG I + A+GA F+Y+RGE+ E L A + S LLG + + G+ Sbjct: 263 SHADLVFEGMTICALAVGARKGFLYLRGEYRYLLEPLHATLQRRRESNLLGESILGRAGF 322 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D DI +H GAGAYICGEE+AL+ESLEGK+G PR +PPFP G PT ++NVE+ Sbjct: 323 DFDIDIHVGAGAYICGEESALIESLEGKRGVPRNRPPFPVTHGYLQQPTAIDNVETFCQA 382 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 L GA Y G + G+KL S+SG P E ++ E+++ CG + Sbjct: 383 VLALYLGAERYRAIGTAKSTGSKLISVSGDCPRPGIYEYPFGVSVREVLQD-CGAV---- 437 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 N +AV G S C+ + + G +++ + A +V D S D+ + Sbjct: 438 -NTIAVQVSGPSGACVGESEFDRKL----GFEDLPTA---GAFMVFDDSRDMFEVARNYV 489 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F+ HESCG CTPCR GT + M+++ G + +++ + + + ++ + C LG A Sbjct: 490 HFFAHESCGFCTPCRVGTSMLKSTMDKIANGHGTRYDLNEVENLDRVLQTTSHCGLGRTA 549 Query: 398 AWPIQGLIKNFRPLIEERI 416 P+ +K+FRP E R+ Sbjct: 550 CNPVLHTLKHFRPAYENRL 568 >gi|225175972|ref|ZP_03729964.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168560|gb|EEG77362.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 618 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 236/411 (57%), Gaps = 5/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N + S++D +++ + + K LE II+EVK SGLRGRGG GF G KW Sbjct: 130 VMRNCGHIDPNSITDYLAQDGYMGLAKALEMTPQEIIDEVKESGLRGRGGGGFPAGRKWE 189 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 +V +D+ Y++ NADE +PG DR ++ +PH++IEG IA +AIGA +YVR Sbjct: 190 SCLRVDADQ-KYVICNADEGDPGAFMDRSVLEGDPHSVIEGMAIAGYAIGATKGILYVRA 248 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ L+ A+++ LLG N G+D ++ + GAGA++CGE TAL+ S+EG++ Sbjct: 249 EYPLAIRQLKIAIEQAKERNLLGKNILGSGFDFELDIFQGAGAFVCGESTALVLSIEGRR 308 Query: 187 GQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G P+ P P + GL+G PT +NNV++ A V I+ RG W+ G EN GT +F+++ Sbjct: 309 GMPKPLPRPRTSEEGLWGKPTLLNNVKTFACVAQIIHRGTDWFKSIGTENCPGTAVFALT 368 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G +N +E M I +++I GG+ GG AV GG S CLP +M +D+ Sbjct: 369 GKINKSGLIEVPMGIQLEKIINDIGGGVAGGR-AFKAVQTGGPSGGCLPP-EMLNLPVDF 426 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L GS +G+ ++VMD +T ++ F ESCGQCTPCR GT M+ ++ + Sbjct: 427 DSLTAAGSMMGSGGMVVMDDTTCMVDVARYFLEFSLEESCGQCTPCRAGTEQMLTILNDI 486 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G ++ +IDLL E+ + I +IC LG +A P+ I+ FR E I Sbjct: 487 SQGKGREGDIDLLVEMGEAIIDGSICGLGQSAPNPVLSTIRYFREEYEAHI 537 >gi|71278646|ref|YP_270681.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H] gi|71144386|gb|AAZ24859.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H] Length = 537 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 148/394 (37%), Positives = 226/394 (57%), Gaps = 8/394 (2%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + D +S G + + K +++EVK SGLRGRGGA F TG+KW + ++ Y Sbjct: 133 VDDYISHGGFVGLTNAFAKTAQQLVDEVKESGLRGRGGAAFPTGIKWQTVLNE-PEQQKY 191 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR +M +P L+EG +IA ++GA +IY+R E+ + + L A Sbjct: 192 IVCNADEGDSGTFADRMLMEGDPLVLVEGMIIAGLSVGADQGYIYLRSEYPQAHDLLNKA 251 Query: 140 VDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + A+G LG N ++ + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 252 ISNAKAAGYLGDNICGTEHNFHLEVRLGAGAYICGEETSLLESLEGKRGLVRAKPPLPAI 311 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNNV S+A VP IL G Y FG +RGT ++G++ VE + Sbjct: 312 EGLFGQPTVVNNVISLASVPYILSHGGDSYRDFGMGRSRGTLPIQLAGNIAQGGLVELAF 371 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 I+ +EL++++ G + + +V GG LPA Q A +DY+ +G+ LG Sbjct: 372 GISLNELLQQYGNGCKSKR-AMRSVQVGGPLGAYLPAEQWDTA-LDYEEFASIGAVLGHG 429 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG--IAQKRE-- 374 ++V D + D+ F + ESCG+CTPCR G + V+++++ G Q+R+ Sbjct: 430 GIVVFDDTVDMAAQARFAMEFCEVESCGKCTPCRIGAVRGVEVIDKIIDGNNDEQQRQDS 489 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +DLL+++ +E ++CA+G +P++ +K F Sbjct: 490 VDLLHDLCDTMEFGSLCAMGGMTPFPVRSALKYF 523 >gi|190893704|ref|YP_001980246.1| formate dehydrogenase, beta subunit [Rhizobium etli CIAT 652] gi|190698983|gb|ACE93068.1| formate dehydrogenase protein, beta subunit [Rhizobium etli CIAT 652] Length = 518 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 215/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SLSD + G + + + I+ EV SGLRGRGGAGF TG+KW + +R Sbjct: 117 SLSDYEAHGGLAGLRRAVSMAPAQIVKEVTDSGLRGRGGAGFPTGIKWKTVLDAPGER-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG I+ A GA FIY R E+ ++ Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFIYTRSEYPHAIAAMSE 235 Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV +G+LG S G DI V GAGAY+CGEETALL SLEGK+G R KPP PA Sbjct: 236 AVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+ CPT +NNV S+A VP I+ +GA++Y FG +RGT I+G+V Y E + Sbjct: 296 HKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLYETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ +++++ GG G + AV GG P + DY+ +G Sbjct: 356 FGLSLGDIVDRIGGGTATGR-PVKAVQVGGPLGAYFPR-TLFDTPFDYEAFAARDGLIGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D++K F ESCG+CTPCR G+ + +++ +GI ++ +L Sbjct: 414 AGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIARGIEPEKNREL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ ++ ++CALG +P+ + +F Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504 >gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] Length = 626 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 150/374 (40%), Positives = 214/374 (57%), Gaps = 21/374 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+ ++ SGLRG GGAGF+TG KW F +++ H+++ NADE EPGT KDR ++ P Sbjct: 228 IISAIEESGLRGCGGAGFTTGRKWRFAASERAEK-HFVICNADEGEPGTFKDRVLLTERP 286 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVD 160 H LIEG IA+ A+GA +Y+RGE++ RE L ++E GLLG + G+D D Sbjct: 287 HLLIEGMTIAARAVGAREGILYLRGEYVYLRELLLQVLEERRWRGLLGKDILGVKGFDFD 346 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + GAGAYICGEE AL+ S EG G+P+ +PPFP N G G PT VNNVE+ I Sbjct: 347 IRLQLGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPTVVNNVETFCHAARI 406 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 L +GA+W++ G E + GTKLFS+ G P E T EL+ + GG D Sbjct: 407 LDKGAAWFNAMGMEGSHGTKLFSVCGDCLNPGIYELPYGHTVWELL-----AMVGGEDA- 460 Query: 281 LAVIPGGSSVPCLPAGQM--RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG P+G M R + ++ +G A+IV + ++++ + Sbjct: 461 AAVQVGG------PSGTMIARDSFHRKLTFDDLATG---GAIIVFNGERNVLEIVEYYMS 511 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ HESCG CTPCR G ++ + +++ KG+A +ID L ++S I + C LG + Sbjct: 512 FFVHESCGYCTPCRVGNVFLQKAIQKFRKGLANPEDIDYLKDLSGTIIETSRCGLGMTSP 571 Query: 399 WPIQGLIKNFRPLI 412 P+ +KNF PL+ Sbjct: 572 NPVLTTLKNF-PLV 584 >gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] Length = 635 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++IG+ +Y+R E+ L+ A+++ Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSTGSMMGSGGMIVM 471 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + I+ +C LG + P+ + NF Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556 >gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22] gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22] Length = 635 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++IG+ +Y+R E+ L+ A+++ Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + I+ +C LG + P+ + NF Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556 >gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] Length = 635 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++IG+ +Y+R E+ L+ A+++ Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + I+ +C LG + P+ + NF Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556 >gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23] gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23] Length = 635 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++IG+ +Y+R E+ L+ A+++ Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + I+ +C LG + P+ + NF Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556 >gi|303248403|ref|ZP_07334663.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302490201|gb|EFL50119.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 454 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 220/385 (57%), Gaps = 9/385 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ V AS LRGRGGAGF G KW +P P Y+VVN DE EPGT KDR ++ +P Sbjct: 45 VLDIVLASDLRGRGGAGFPAGRKWQGIPAGYVG-PRYVVVNTDEMEPGTFKDRVLVNVDP 103 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160 H +IEG ++ ++A+ A ++R + + L+ GLLG N LG D D Sbjct: 104 HLVIEGILLCAYAVSATLGVCFIRPSYEADAVLLERETQVARDKGLLGKNI-LGTDFSFD 162 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I VH AG YICGE +A ++++ G + PR P + GL+ CPT VNN+E++A +P I Sbjct: 163 IHVHRSAGRYICGEASAQIKAISGLRPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGI 222 Query: 221 LRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 ++ G W+ R GTKLFS+SG + P E M I E++ +H GG+ G Sbjct: 223 VKNGPDWFKSLARTPTGAGTKLFSVSGRIAKPDCYELPMGIPLREILFEHAGGMPPG-RA 281 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AVIPGG+S P +P ++ MD+D +K+ G LGTA+++V D++T ++ A L F Sbjct: 282 IKAVIPGGASTPFMPE-RLLDLPMDFDAMKKAGQRLGTASIMVFDQNTCLVGATLNLIEF 340 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 + ESCG CTPCREG ++ ++ + G ++ I ++ +++K ++ CA AA Sbjct: 341 FTRESCGWCTPCREGLPYVRHLLRLIESGEGKEEHIGMIRDMAKVMQS-AYCAFAPGAAE 399 Query: 400 PIQGLIKNFRPLIEERIDQYHRCNF 424 PI L+ +F + E + Q +C F Sbjct: 400 PILSLLTHFEAEVREHLHQ-RKCPF 423 >gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium enrichment culture clone BF] Length = 597 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/415 (36%), Positives = 236/415 (56%), Gaps = 6/415 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFST 62 Q R+ N + + + + ++R ++ + K+L +I ++K +GLRGRGG GF T Sbjct: 115 QQRVALRNCGHINPEYIQEYIARDGYEALAKVLTTMTPAQVIEDMKIAGLRGRGGGGFPT 174 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F K + Y++ NADE +PG DR ++ +PH+++EG +IA++AIGA + Sbjct: 175 GLKWDFASKSPGPK-KYIICNADEGDPGAFMDRSVLEGDPHSVLEGMMIAAYAIGADEGY 233 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+ + GLLG N G++ + + GAGA++CGEETAL+ S Sbjct: 234 IYVRAEYPLAIKRLKVAIAQAEELGLLGENIMGSGFNCTLHIKEGAGAFVCGEETALMAS 293 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G P +PPFPA GL+ P+ +NNVE+ A VP I GA Y+ G E ++GTK+ Sbjct: 294 IEGSRGMPNPRPPFPAVKGLWEKPSNINNVETFANVPVIYLNGAEKYASVGTEKSKGTKV 353 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G V E M IT E+I GGI AV GG S C+P + Sbjct: 354 FALTGKVRNTGLAEVPMGITLREIIFDIGGGIMDD-KKFKAVQIGGPSGGCIPEQHLDTP 412 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + DYD L +G+ +G+ ++VMD ++ ++ F + ESCG+C PCREGT M+ + Sbjct: 413 V-DYDSLIALGAMMGSGGLVVMDETSCMVDVARFFLNFTQKESCGKCIPCREGTMRMLEI 471 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +E++ G +I L + I+ +CALG +A PI ++ FR E I Sbjct: 472 LEKICAGKGVPEDITTLETLGAAIKNTALCALGQSAPNPILSTLRYFRHEYEAHI 526 >gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Bacteroides xylanisolvens XB1A] Length = 635 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++IG+ +Y+R E+ L+ A+++ Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + I+ +C LG + P+ + NF Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556 >gi|116050628|ref|YP_790553.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa UCBPP-PA14] gi|115585849|gb|ABJ11864.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa UCBPP-PA14] Length = 449 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/391 (39%), Positives = 218/391 (55%), Gaps = 11/391 (2%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + + +D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ +L A+DE A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG++G PT VNNVE+ Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229 Query: 214 IAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + VP I+ G WY R + GTKL SG V P E ++ EL E + G Sbjct: 230 LCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAG 289 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD--- 328 G+R G+ L A PGG+ L + A M G+ ++G+ +GT R Sbjct: 290 GMRDGF-QLKAWQPGGAGTGFLLPEHLD-AQMFAGGIAKVGTRMGTGLAHGGGRQHQHGF 347 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EG 387 A W+ S + PCR+G W ++++ L +G Q +++ L ++ + G Sbjct: 348 PCCATWKSSSPASPAA--GAPPCRDGLPWSVKLLRALERGEGQPGDLETLKQLVNFLGPG 405 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +T CA A P+ +K FR E I + Sbjct: 406 KTFCAHAPGAVEPLGSALKYFRAEFEAGISR 436 >gi|269837267|ref|YP_003319495.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] gi|269786530|gb|ACZ38673.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] Length = 575 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 151/425 (35%), Positives = 228/425 (53%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDN-VDKILEKGRDWIINEVKASGLRGRGGA 58 L Q R+ +G+ +S+ D ++RG + + I + + ++NEVK S +RGRGGA Sbjct: 136 FLAGQRRVLMADWGIIDPESIEDYIARGGYQAWIKAIFDMTPEEVVNEVKISNVRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW + P Y++ N+ E EP KDR ++ PH ++EG +I +A+ Sbjct: 196 GFPAGIKWE-SGRRTQAWPKYVIANSHEGEPNVFKDRRLIESNPHLVLEGIMIGCYALET 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + YV GE E + AVD+ Y GLLG N G I V G GAYICGE +A Sbjct: 255 PHGYNYVGGEHKLAIERFRKAVDQAYELGLLGDNVLGSGVSCHIRVRTGGGAYICGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ G++GQPR KPP G++ PT +NN E+ A +P I+R G +WY+ G E + Sbjct: 315 LMYSVMGQRGQPRTKPPRSVEEGVWKRPTVLNNTETFANIPGIIRNGGAWYAAMGTEKST 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL ++ G V VE M + E+I GG+R G+ V GG S L Q Sbjct: 375 GTKLITMQGPVQRIGVVEIEMGMPMREVIFGLFGGMREGY-VFKGVQTGGVSAGPLREDQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + D+D L +G LG+ +V D+S + L F ++ESC +C PCR G Sbjct: 434 LDVPV-DFDSLTPLGGMLGSGGFVVFDQSVCAVDFARYLQEFNRYESCAKCVPCRLGNPA 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ER+ G A++ ++ L+ E S+ I ++C LG A P G+I+ F I+ Sbjct: 493 LVEIIERIRLGQARQGDLALIEETSRPIIDLSLCGLGQVAPMPTLGMIRAFPEDFAAHIE 552 Query: 418 QYHRC 422 + HRC Sbjct: 553 E-HRC 556 >gi|319794267|ref|YP_004155907.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Variovorax paradoxus EPS] gi|315596730|gb|ADU37796.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus EPS] Length = 595 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 212/368 (57%), Gaps = 17/368 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D ++ + SGLRG GGAGF G KW + + + P + VN DE EPGT KDR + Sbjct: 240 DDVLKTMTDSGLRGLGGAGFPAGRKWGIVRQQLA--PRLMAVNIDEGEPGTFKDRTYLER 297 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 +PH ++G +IA+ +G ++Y+R E+ R L+ + LL +N Sbjct: 298 DPHRFLDGLLIAATVVGIDACYVYLRDEYHGCRAILEREL------ALLQANPPCALP-R 350 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A +GL+G PT +N E++ V I Sbjct: 351 IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQIGLFGRPTLEHNFETLYWVRDI 410 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + RGA+W+S FGR G + FS+SG V P IT EL+++ CGG+ G D L Sbjct: 411 VERGAAWFSDFGRNGRHGLRSFSVSGRVREPGVKLAPAGITLRELVDEFCGGMLPGHD-L 469 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 A +PGG+S LPA M +D+D L+ G +G+AAVIV+ + A + F+ Sbjct: 470 YAYLPGGASGGILPA-SMSDIPLDFDTLQPHGCFIGSAAVIVLSQKDRARDAALNMMHFF 528 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 +HESCGQCTPCR GTG R+M + L ++++ + +IC LG AA P Sbjct: 529 EHESCGQCTPCRVGTGKAARLMAE------PHWDHATLEDLNQVMVDASICGLGQAAPNP 582 Query: 401 IQGLIKNF 408 ++ + K F Sbjct: 583 VRCVQKYF 590 >gi|91788666|ref|YP_549618.1| NADH dehydrogenase (quinone) [Polaromonas sp. JS666] gi|91697891|gb|ABE44720.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polaromonas sp. JS666] Length = 566 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 211/366 (57%), Gaps = 16/366 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ ++ SGLRG GGAGF G KW + P + VN DE EPGT KDR + +P Sbjct: 212 VLKTMEDSGLRGLGGAGFPAGRKWRIVRAEAG--PRLMAVNIDEGEPGTFKDRVYLERDP 269 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +EG +IA++A+G +IY+R E+ R L+ +D+ + + + I Sbjct: 270 HRFLEGMLIAAWAVGIEKIYIYLRDEYHGCRAMLETELDKLRLAPPMAGMPQ------IE 323 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT +N E++ V IL Sbjct: 324 LRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLFWVREILE 383 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 +G +W++ GR +G + FS+SG V P IT ELI++HCGG++ G A Sbjct: 384 KGGAWFTSHGRNGRKGLRSFSVSGRVKSPGVKLAPAGITIQELIDEHCGGMQDG-HTFYA 442 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 +PGG+S LPA M +D+D L+ G +G+AAVIV+ A + F+ H Sbjct: 443 YLPGGASGGILPA-TMNSIPLDFDTLQPYGCFIGSAAVIVLSDQDTATNAARNMMRFFHH 501 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCGQCTPCR GT +ME+ K ++ LL ++S + +IC LG AA P+ Sbjct: 502 ESCGQCTPCRVGTAKAAHLMEK------PKWDLALLADLSLVMRDASICGLGQAAPNPMD 555 Query: 403 GLIKNF 408 ++K F Sbjct: 556 CVVKYF 561 >gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] Length = 628 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 5/404 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +++ D ++ G + + + L E + +I EVK S LRGRGG GF TG KW Sbjct: 139 LIKNNIKINPRNIEDYIALGGYSALARALSEMTPEEVIEEVKRSNLRGRGGGGFPTGRKW 198 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + P Y++VN DE +PG DR +M PH+++EG +IA++A+G+H FIYVR Sbjct: 199 KST-REAPGEPKYVIVNCDEGDPGAFMDRALMEGNPHSVLEGLIIAAYAMGSHKGFIYVR 257 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ ++ A+ + GLLG N G+D D+ +H GAG+++ GE TAL+ +LEG Sbjct: 258 MEYPLAVQNATLALQQAREYGLLGENILGTGFDFDVSIHRGAGSFVSGESTALMNALEGW 317 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR K + GL+G P+ +NNVE+ A VP I+ GA W++ G E ++GTK+FS+ Sbjct: 318 VGEPRPKYVHTSQKGLWGRPSALNNVETFANVPLIIEHGAKWFNSIGTERSKGTKIFSLV 377 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN VE M +T ++I K GGI G L V GG S +PA + + D+ Sbjct: 378 GKVNNTGLVEVPMGMTLADIIYKIGGGIPGN-KKLKGVQTGGPSGGIIPARYLNTPV-DF 435 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L +GS +G+ ++IV+D T + F ESCG+C PCREG M +++ + Sbjct: 436 DELTSLGSMMGSGSIIVIDEDTCAVDLARYFVDFLCSESCGKCLPCREGLKRMREILDAI 495 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 G + +I L E+++ + ++CALG A P+ I+ FR Sbjct: 496 ESGRGTETDIQTLQEIAELMRTASLCALGRTAVNPVLSTIRYFR 539 >gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 595 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 223/387 (57%), Gaps = 6/387 (1%) Query: 25 SRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 +RG ++ + K+L E D +I + SGLRGRGG GF TG+KW +D+ Y+ N Sbjct: 135 TRG-YEALGKVLTEMTPDDVIQVLLDSGLRGRGGGGFPTGLKWKLAKGNDADQ-KYVCCN 192 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADE +PG DR ++ +PH ++E IA +AIGA +IYVR E+ L+ A+ + Sbjct: 193 ADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGATQGYIYVRAEYPIAVARLEIAIKQA 252 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 GLLG+N + D+ + GAGA++CGEETAL+ S+EG +G+PR +PPFPA GL+ Sbjct: 253 REYGLLGNNIFGTDFSFDVGLRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPAQKGLF 312 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PT +NNVE+ A +P I+ G+ W++ G E ++GTK+F++ G + VE M T Sbjct: 313 QKPTILNNVETYANIPQIILNGSEWFASMGTEKSKGTKVFALGGKIKNTGLVEIPMGTTL 372 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 E++E+ GGI G A GG S C+P I DYD L +GS +G+ +IV Sbjct: 373 REVVEQIGGGIPNG-KKFKAAQTGGPSGGCIPVEHFDIPI-DYDNLISIGSMMGSGGLIV 430 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 MD ++ F ESCG+CTPCR GT M+ ++E++ KG ++D L E+ Sbjct: 431 MDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKRMLEILEKITKGNGTLEDLDKLEELC 490 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409 I+ ++C LG A P+ ++ FR Sbjct: 491 YYIKDNSLCGLGQTAPNPVLSTLRYFR 517 >gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a] gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a] Length = 489 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 30 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 88 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++IG+ +Y+R E+ L+ A+++ Sbjct: 89 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 148 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 149 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 207 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 208 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 267 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 268 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 325 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 326 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 384 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + I+ +C LG + P+ + NF Sbjct: 385 QVIKDTALCGLGQTSPNPVLSTLDNF 410 >gi|260886836|ref|ZP_05898099.1| protein HymB [Selenomonas sputigena ATCC 35185] gi|330839360|ref|YP_004413940.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185] gi|260863435|gb|EEX77935.1| protein HymB [Selenomonas sputigena ATCC 35185] gi|329747124|gb|AEC00481.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185] Length = 416 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 220/400 (55%), Gaps = 5/400 (1%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N + S+ ++ G ++ + K + + I + + + ++GRGGA + G KWS Sbjct: 10 NFHRYDPMSIESYLAIGGFNALKKTVTMDGEDIASLLSEAQIKGRGGAAYPMGRKWS-QA 68 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + ++ NADE EP T KDR+++ ++P LIE I +++I A +IY+R E+ Sbjct: 69 RAVKGEHKVIICNADEGEPCTFKDRELITNDPFNLIEAMTIGAWSIRAQDGYIYLREEYA 128 Query: 131 RERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 R L+ A++E G LG N K G+D I + GAGAY+CGE TAL+ S+EGK G+ Sbjct: 129 HLRSRLKNAIEEAERCGFLGKNILGKEGFDFHIHLRSGAGAYVCGEGTALIRSIEGKAGR 188 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR+KPPF GL+ PT VNNVES+++VP +L Y +G + GTKL S+ G+V Sbjct: 189 PRMKPPFIKQSGLFALPTCVNNVESLSIVPHLLLDDKKEYISYGSGESLGTKLVSVGGNV 248 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 N P E T E+I GGI+GG + +I G + + + YD L Sbjct: 249 NCPAVFEIPFGTTVREIIYDLAGGIQGG--RRIRLIQFGGASGKIADESILDVPYTYDDL 306 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 K G +G+ A++V+D T ++ + F+ HESCGQCTPCREG + ++E+ +G Sbjct: 307 KAAGVTVGSGAILVVDERTSVLDFLRMTQAFFSHESCGQCTPCREGVLHIKLILEKFAQG 366 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 A +++++ + +++ + +C LG++A + K F Sbjct: 367 TATEKDLENMKMIARIMPMSALCGLGESAENALSAAFKLF 406 >gi|319760612|ref|YP_004124550.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer str. BVAF] gi|318039326|gb|ADV33876.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer str. BVAF] Length = 444 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 144/357 (40%), Positives = 203/357 (56%), Gaps = 7/357 (1%) Query: 65 KWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KWS M K S + +YL+ NADE EPGT KDR +M PH L+EG +IA +A+ A+I Sbjct: 73 KWSMMIKHQSILKVNYLICNADEMEPGTYKDRLLMERLPHLLLEGILIAGYALSVSVAYI 132 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 ++R E++ + L A+ E ++GLLG N + +DI +H GAG YICGEETAL+ +L Sbjct: 133 FLRYEYMIAAKYLNFAISELRSAGLLGKNILNTEFSLDIFLHTGAGRYICGEETALINAL 192 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTK 240 EGK+ PR KPPFPA GL+G PT +NNVE++ +P I+ G SWY + N+ GTK Sbjct: 193 EGKRAVPRSKPPFPAQSGLWGKPTCINNVETLCNIPGIIEYGVSWYKNLSNKYSNDSGTK 252 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L SG V P E IT E++E + G+ G L A PGG+S L + Sbjct: 253 LMGFSGRVKNPGVWELPFGITAREILEDYARGMCDGL-YLKAWQPGGASTDFLIPNHLDT 311 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+ + +GS GT I +D + ++I + L F+ ESCG CTPCREG W+++ Sbjct: 312 P-MDFHSISIIGSRFGTGMAIAIDNTVNMISLMRNLEEFFARESCGWCTPCREGLPWIVK 370 Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ L K +I++L + + G+T CA A P+Q +K FR E I Sbjct: 371 LLISLEKNNGDPGDIEILEHLCNLLGPGKTFCAHAPGAIEPLQSALKYFRSEFEAGI 427 >gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] Length = 584 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 232/416 (55%), Gaps = 4/416 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N + +SL D ++ + + L + +IN +K +GLRGRGGAGF TGMKW Sbjct: 108 VLANCGEIDPESLDDYLAHKGYIALQNALAMSPEDVINTMKTAGLRGRGGAGFPTGMKWD 167 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F + D+ Y+V NADE +PG DR ++ +PH +IEG +IA +AIGA +IY R Sbjct: 168 FCRQAEGDQ-KYIVCNADEGDPGAFMDRSVLEGDPHAVIEGMIIAGYAIGATEGYIYCRA 226 Query: 128 EFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ + L A+ + G LG N + + + + GAGA++CGEETALL S+EG++ Sbjct: 227 EYPIAIKRLTKAIAQTEERGYLGKNIQGSDHSFHLTIKQGAGAFVCGEETALLASIEGRR 286 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G P+++PPFPA GL+G PTT+NNVE++A V + +GA W++ G E ++GTK+F+++G Sbjct: 287 GMPKIRPPFPAQKGLWGKPTTINNVETLANVRHVFEKGADWFASIGTEKSKGTKVFALAG 346 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + VE M +T +L+ GG+ + GG S CLP + I DY+ Sbjct: 347 KIKNTGLVEVPMGMTIRDLVFGPGGGMLRKKAKFKGIQLGGPSGGCLPESLLDTPI-DYE 405 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + G+ +G+ ++VMD T ++ F +ESCG+C PCR G + V++ + Sbjct: 406 SINKTGAIMGSGGMVVMDTRTCMVDVARFFLDFTVNESCGKCVPCRVGLKRTLEVLDEIT 465 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 G + + L E+ I+ +C LG+ A P+ ++ F E I + H C Sbjct: 466 AGRGTEEHLTFLQEMGITIKNTALCGLGNTAPNPVLTTMRYFPQEYEAHI-RDHVC 520 >gi|296159983|ref|ZP_06842803.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1] gi|295889729|gb|EFG69527.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1] Length = 521 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 220/393 (55%), Gaps = 7/393 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + + L+ D + SGLRGRGGA F G+KW + + Sbjct: 116 SIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RGAKAAQK 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA GA IYVR E+ +L+A Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATVGHIYVRSEYPHSIATLEA 234 Query: 139 AVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + A+G LG +S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP Sbjct: 235 AITKARAAGWLG-DSVLGSTAHRFELFVAKGAGAYVCGEETALLESLEGKRGIVRAKPPV 293 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA VGL+G PT +NNV ++A VP I RGA++Y FG +RGT F ++G+V VE Sbjct: 294 PALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNVKQGGLVE 353 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +T EL+ + GG G AV GG LP Q MDY+ +G+ + Sbjct: 354 LAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVV 411 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G ++V D ++++ + F ESCG+CTPCR G+ + V+ R+ G R++ Sbjct: 412 GHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIGRIRNGDTSTRQV 471 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 472 QLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 504 >gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191] gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191] Length = 620 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 154/423 (36%), Positives = 239/423 (56%), Gaps = 14/423 (3%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI G + + +++ +S G + + K L E + I E+K SGLRGRGG GF T Sbjct: 138 QHRILLKDCGKINPEDINEYISHGGYSALAKCLNELKEEGTIEEIKKSGLRGRGGGGFPT 197 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F + + Y++ N DE +PG DR ++ PH +IEG +I FA GA Sbjct: 198 GLKWQFT-RASKGKQKYMICNGDEGDPGAYMDRSLLEGNPHAVIEGMIIGGFATGASKGL 256 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 Y+R E+ +QAA+D Y +GLLG N SK YD++I +GAGA++CGEETAL+ Sbjct: 257 FYIRAEYPLAISRVQAAIDAAYKAGLLGKNILGSKFSYDLEI--RYGAGAFVCGEETALM 314 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++G P KPPFP+ GL+GCPT++NNVE++A +P I+ G+ W+S G + GT Sbjct: 315 RSIEGQRGTPTPKPPFPSVKGLWGCPTSINNVETLANIPLIIYNGSEWFSKIGSGKSTGT 374 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQ 297 K+F+++G V +E M IT E++ G +D + AV GG S +PA + Sbjct: 375 KVFAMTGKVKSSGLIEVPMGITIKEVVFDIG---EGAYDGRVIKAVQTGGPSGGVIPAEK 431 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 I Y+ L E GS +G+ +IVMD S ++ F ESCG+C PCR G Sbjct: 432 FDMPIT-YESLIEAGSMMGSGGLIVMDNSDCMVDIAKFYLEFCVEESCGKCVPCRIGGYQ 490 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++++++ + +G + + ++ ++ ++CALG A P+ +K+F +E + Sbjct: 491 LLKILKDISEGKEVGDYKEKIGNLALTMQKASLCALGQTAPNPVLSCLKSFGHEFDEHVK 550 Query: 418 QYH 420 + H Sbjct: 551 EKH 553 >gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] Length = 633 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 158/423 (37%), Positives = 241/423 (56%), Gaps = 11/423 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + + ++ G + ++K+L E +I E+ S LRGRGG GF TG KW Sbjct: 154 VLKNCGHIDSEHIQEYIAAGGYRALEKVLFEMTPAQVIEEISESNLRGRGGGGFPTGYKW 213 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S + + ++ Y+V N DE +PG DR IM +PH +IEG +I ++A+GA +IYVR Sbjct: 214 SQVARQ-PEKVRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGARDGYIYVR 272 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ L+ A+ + GLLG + LG D +H GAGA++CGE +AL S+EG Sbjct: 273 AEYPLAISRLKLAISQAEECGLLG-DLILGTDFSFHLHINRGAGAFVCGEGSALTASIEG 331 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G EN+ GTK F++ Sbjct: 332 SRGMPRVKPPRTVEKGLFAKPTVLNNVETFANVPMIINEGAGWFKSIGPENSPGTKAFAL 391 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V + +E M + E+I GGI+ AV GG S CL + +D Sbjct: 392 TGSVKHTGLIEVPMGTSLREVIYDIGGGIKEDG-KFKAVQIGGPSGGCLVTRHL-DVNLD 449 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT M+ ++ER Sbjct: 450 FDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 509 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY---H 420 +V G + ++DLL E++ I +C LG +AA P+ +K FR +E +D+ H Sbjct: 510 IVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVVSTLKLFRDEYVEHVVDKKCVSH 569 Query: 421 RCN 423 C Sbjct: 570 TCT 572 >gi|297539618|ref|YP_003675387.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301] gi|297258965|gb|ADI30810.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301] Length = 513 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 146/391 (37%), Positives = 218/391 (55%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D ++ + + K L I+ V SGLRGRGGA F TG+KW+ + +D+ Sbjct: 118 SLDDYIAHDGYKGLKKALTLSGAEIVKAVTDSGLRGRGGAAFPTGIKWNTVLGCQADQ-K 176 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A+GA +IY+R E+ ++L Sbjct: 177 YIVCNADEGDSGTFSDRMIMEDDPFVLIEGMTIAGVAVGATQGYIYLRSEYPHALKALNE 236 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ + A+G LG + ++ V AGAY+CGEET+LLESLEGK+G R KPP PA Sbjct: 237 AIAKAEAAGYLGDKICGSTHTFNLEVRRAAGAYVCGEETSLLESLEGKRGLVRFKPPLPA 296 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV S+A VP IL +GA +Y+ +G +RGT ++G++ + VE + Sbjct: 297 IEGLFGKPTVVNNVISLATVPIILDKGAQYYADYGMGRSRGTLPIQLAGNLKHGGLVELA 356 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL+ + GG G + AV GG LP Q +DY+ + + +G Sbjct: 357 FGITLRELLYDYGGGSATG-KPIRAVQVGGPLGAFLPESQFD-TPLDYEAFSNIWAVVGH 414 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++ D + D+ K F ESCG+CTPCR G+ + V+++++ G + I L Sbjct: 415 GGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGVEVIDKIIAGKDTAKNIKL 474 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++S + ++CALG +P+ + +F Sbjct: 475 VRDLSDTMLNGSLCALGGMTPYPVLSAMNHF 505 >gi|288959751|ref|YP_003450091.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510] gi|288912059|dbj|BAI73547.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510] Length = 526 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 220/393 (55%), Gaps = 8/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L + I+ V SGLRGRGGAGF TG+KW+ + + +D Sbjct: 120 SVEDYRAHGGFRGLENALAMSQAEIVKVVTDSGLRGRGGAGFPTGIKWNTVMQAKADE-K 178 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 ++ NADE + GT DR I+ +P LIEG IA+ A+GA ++Y+R E+ +L+ Sbjct: 179 FVCCNADEGDSGTFADRMIIEGDPFCLIEGMTIAAIAVGATSGYVYMRSEYPHATATLRH 238 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ Y G LG N + + +D+ V GAGAYICGEETA+LESLEGK+G R KPP Sbjct: 239 AIKLAYDEGWLGDNIHGTSRTFHLDVRV--GAGAYICGEETAMLESLEGKRGMVRAKPPL 296 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT VNNV S+ VP IL RGA +Y FG +RGT F ++G++ + VE Sbjct: 297 PALEGLFGKPTVVNNVLSLCSVPIILDRGAEYYRDFGVGRSRGTLPFQLAGNLKHGGIVE 356 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 ++ IT EL+ GG G + AV GG LP Q DY+ + + Sbjct: 357 KAFGITLHELLYDFGGGTITGRP-IRAVQVGGPLGAYLPPSQFD-LPKDYEAFAAQEAMV 414 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G ++V D S D+ + F ESCG+CTPCR G+ M +++++ G + Sbjct: 415 GHGGIVVFDDSVDMARQARFAMEFCVAESCGKCTPCRIGSTRGMETLDKIIAGRNVDANL 474 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +LL ++ + ++CA+G +P++ +K+F Sbjct: 475 ELLADLCDVMVDGSLCAMGGMTPYPVRSAVKHF 507 >gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis OB47] gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis OB47] Length = 598 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/411 (38%), Positives = 243/411 (59%), Gaps = 8/411 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++ + + K+L E + +I+ VK SGLRGRGG GF TG+KW F K Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ ++YVR E+ Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+++ GLLG N LG ++ DI + GAGA++CGEETAL+ S+EG +G+PR Sbjct: 245 KRLEIAINQAREYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++GTK+F++ G VN Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E++E GG G AV GG S C+PA M I D+D L + Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ +IVMD T ++ F ESCG+C PCR GT M+ +++++ G Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +++ L E++ +I+ +C LG A P+ ++ FR E + + RC Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531 >gi|71892262|ref|YP_277996.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796368|gb|AAZ41119.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 443 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 156/391 (39%), Positives = 230/391 (58%), Gaps = 6/391 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I + + II V+ SGLRGRGG GF TG+KWS M + S YLV NADE EPGT KD Sbjct: 43 ITQMSPEEIIELVRNSGLRGRGGGGFFTGIKWSMMSQSKSVCSRYLVCNADEMEPGTYKD 102 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I+S+A+GA A+I++R E+I + L A+ E + GL+G N Sbjct: 103 RFLMERLPHLLLEGILISSYALGASRAYIFLRYEYIIVAKYLTRAIAEIKSIGLIGKNIL 162 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 ++ ++ +H GAG YICGEETAL+ +LEG++ PR KPPFP++VGL+G PT VNNVE+ Sbjct: 163 NSEFNFELFLHTGAGRYICGEETALINALEGRRAVPRAKPPFPSHVGLWGKPTCVNNVET 222 Query: 214 IAVVPTILRRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + +P I+ G +WY + N+ GTKL SG V P E T E++E + Sbjct: 223 LCNIPGIIEHGTTWYRNISSKKSNDSGTKLMGFSGRVKNPGVWELPFGTTAREILEDYSR 282 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+ G+ +L A PGG S L + MD+D + GS GT I +D + +++ Sbjct: 283 GMCPGF-SLKAWQPGGVSTDFLTTDHLDTP-MDFDKIAISGSRFGTGMAIAIDNTVNMVS 340 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390 + L F+ ESCG CTPCR+G W+++++ L + +I+LL ++ + GRT Sbjct: 341 LVRNLEEFFSRESCGWCTPCRDGLPWIVKLLISLENKDGRPGDIELLEKLCCVLGPGRTF 400 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 CA A P++ +K F+ E I ++++ Sbjct: 401 CAHAPGAIEPLKSALKYFKNEFELGIHEFYK 431 >gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus 6A] gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus 6A] Length = 598 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/411 (38%), Positives = 243/411 (59%), Gaps = 8/411 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++ + + K+L E + +I+ VK SGLRGRGG GF TG+KW F K Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ ++YVR E+ Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+++ GLLG N LG ++ DI + GAGA++CGEETAL+ S+EG +G+PR Sbjct: 245 KRLEIAIEQARQYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++GTK+F++ G VN Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E++E GG G AV GG S C+PA M I D+D L + Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ +IVMD T ++ F ESCG+C PCR GT M+ +++++ G Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +++ L E++ +I+ +C LG A P+ ++ FR E + + RC Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531 >gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 598 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/411 (38%), Positives = 243/411 (59%), Gaps = 8/411 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++ + + K+L E + +I+ VK SGLRGRGG GF TG+KW F K Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ ++YVR E+ Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+++ GLLG N LG ++ DI + GAGA++CGEETAL+ S+EG +G+PR Sbjct: 245 KRLEIAIEQARQYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++GTK+F++ G VN Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E++E GG G AV GG S C+PA M I D+D L + Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ +IVMD T ++ F ESCG+C PCR GT M+ +++++ G Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +++ L E++ +I+ +C LG A P+ ++ FR E + + RC Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531 >gi|91775074|ref|YP_544830.1| NADH dehydrogenase (quinone) [Methylobacillus flagellatus KT] gi|91709061|gb|ABE48989.1| formate dehydrogenase beta subunit [Methylobacillus flagellatus KT] Length = 516 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 218/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D ++ + + ++ I+ +V SGLRGRGGA F TG+KW + + +++ Sbjct: 116 SLQDYLAHDGYKGLRNAIDMAPQDIVQQVTDSGLRGRGGAAFPTGIKWKTVLEAPAEQ-K 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A+GA +IYVR E+ +L Sbjct: 175 YVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGATQGYIYVRSEYPHSIAALNL 234 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ Y +G LG LG +D + V AGAY+CGEETALLESLEGK+G R KPP P Sbjct: 235 AIKSAYEAGYLG-RGILGSRHDFYLEVRRAAGAYVCGEETALLESLEGKRGLVRFKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV S+A VP IL +G+ +Y +G +RGT ++G++ + VE+ Sbjct: 294 AISGLFGKPTVINNVISLASVPIILDKGSVYYRDYGMGRSRGTLPIQLAGNIKHGGLVEK 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ + GG G + AV GG LP Q +DY+ ++ + LG Sbjct: 354 AFGVTLRELLYDYGGGSASG-RPIKAVQVGGPLGAYLPESQFD-TPLDYEEFGKLWAVLG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 ++ D + D+ F ESCG+CTPCR G+ + VM++++ G + I Sbjct: 412 HGGIVAFDDTVDMAHMARYAFEFCAVESCGKCTPCRIGSTRGVEVMDKIIAGTDPAKHIA 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L+ ++ + ++CALG +P+ + +F Sbjct: 472 LVRDLGDTMLNGSLCALGGMTPYPVLSALNHF 503 >gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 637 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 155/394 (39%), Positives = 232/394 (58%), Gaps = 5/394 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++ + ++RG + + K L + +I EVK SGLRGRGG GF TG KW + Sbjct: 169 ENMDEYIARGGYTALHKALTTMSPEDVILEVKTSGLRGRGGGGFPTGTKWESCRRA-EGE 227 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N DE +PG DR +M +PH+++EG +I ++AIGAH +IYVR E+ +L Sbjct: 228 IKYVICNGDEGDPGAYMDRSLMEGDPHSVLEGMIIGAYAIGAHEGYIYVRNEYPLAVANL 287 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q A+ + +GLLG N G++ DI + GAGA++CGE TAL+ SLEGK G+PR K Sbjct: 288 QHAIGQAREAGLLGKNILGTGFEFDIKIAKGAGAFVCGESTALMASLEGKAGEPRAKYIH 347 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 GL+ P+ +NNVE+ A VP I+ RG W+SG G +++ GTK+FS+ G +N VE Sbjct: 348 TVEQGLWNRPSNLNNVETWANVPVIIARGGQWFSGIGVKHSTGTKVFSLVGKINNIGLVE 407 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M I ++I + GGI GG AV GG S C+P M +D+D L E GS + Sbjct: 408 VPMGIPLKDIIYEIGGGIPGG-RKFKAVQTGGPSGGCIP-DTMIDLPVDFDSLWEAGSMM 465 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD T ++ F ESCG+C PCREG M +++ + G ++ ++ Sbjct: 466 GSGGMIVMDDKTCMVDIARYFIEFLVSESCGKCVPCREGIYRMNEILQDICAGKGRRGDL 525 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +LL +++ I+ ++CALG +A P+ I+ FR Sbjct: 526 ELLGRMAEAIKDGSLCALGGSAPNPVLSTIRYFR 559 >gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] Length = 612 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 155/392 (39%), Positives = 228/392 (58%), Gaps = 6/392 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ + + + II E++ SGLRGRGGAGF TG+KW F D Y++ NADE Sbjct: 156 GYQGLAKALFDIAPEGIIEEMRLSGLRGRGGAGFPTGLKWKFAAASPGDV-KYVLCNADE 214 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR I+ +PH ++EG +IA+ AIGAH +IY R E+ + L A+ + Sbjct: 215 GDPGAFMDRSILESDPHAVLEGMIIAAVAIGAHQGYIYCRSEYPLAIQRLTLAIGQAREL 274 Query: 147 GLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GLLG S LG D D+ ++ GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+G Sbjct: 275 GLLG-ESILGSDFSFDLEIYQGAGAFVCGEETALMRSIEGRRGMPRPRPPFPAQQGLWGR 333 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE++A V I+R G Y+G G E + GTK+F++SG VN VE M Sbjct: 334 PTVLNNVETLANVGRIIRLGGGHYAGIGTEGSTGTKVFALSGDVNNIGLVEVDMGTPLSV 393 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L+ GG+ G AV GG S +PA + +DY+ + + G+ +G+ VIVM+ Sbjct: 394 LVNDIGGGVP-GKRACKAVQLGGPSGGSIPA-HLLDTPVDYEAIAKAGAIMGSGGVIVMN 451 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 T ++ F + ESCG+CTPCREGT + ++ R+ +G ++ L +++ Sbjct: 452 DRTCMVDMARFFMDFIQDESCGKCTPCREGTRRQLEILTRICEGRGAPGDLRTLEDLAAV 511 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 I ++C LG A+ PI +++FR E I Sbjct: 512 ITDASLCGLGQTASNPILSALRHFRDEFEAHI 543 >gi|86359439|ref|YP_471331.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42] gi|86283541|gb|ABC92604.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42] Length = 518 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 152/410 (37%), Positives = 221/410 (53%), Gaps = 5/410 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ G+ SL D + G + + + I+ EV SGLRGRGGAG Sbjct: 98 FLKEQTRLTFARCGITDPLSLGDYEAHGGLAGLRRAVSMTPVEIVKEVTDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +R Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLDASGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ + A+ +G+LG S G DI V GAGAY+CGEETAL Sbjct: 217 KGFVYTRSEYPHAIAVMSEAIGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ RGA++Y FG +RG Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMERGAAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ +++++ GG R G + AV GG P + Sbjct: 337 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTRTGRP-VKAVQVGGPLGAYFPR-AL 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++++ +GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETVDKIARGIEPEKNRVLLGDLCNTMKFGSLCALGGFTPYPVMSAMTHF 504 >gi|222150019|ref|YP_002550976.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4] gi|221737001|gb|ACM37964.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4] Length = 518 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 157/422 (37%), Positives = 227/422 (53%), Gaps = 13/422 (3%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ + G+ SL D + K + I+ EV SGLRGRGGAG Sbjct: 98 FLKNQTRLTFSRCGITDPLSLEDYRHYKGLTGLAKAIAMPPADIVTEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +++ Y+V NADE + GT DR IM +P LIEG VIA A+GA Sbjct: 158 FPTGIKWKTVADAKAEQ-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMVIAGIAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177 ++Y R E+ ++ A++ G+LG+ S LG Y D+ V GAGAY+CGEET+ Sbjct: 217 KGYVYTRSEYPHAIVVMREAIEIARKQGILGA-SVLGSAYAFDMEVREGAGAYVCGEETS 275 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL SLEGK+G R KPP PA GL+G PT VNNV S+A +P I+ RGA +Y +G + Sbjct: 276 LLNSLEGKRGVVRAKPPLPALEGLFGKPTVVNNVMSLASIPVIMDRGAQFYRDYGVGRSH 335 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT I+G+V + E + +T E+I GG G + AV GG P Sbjct: 336 GTIPIQIAGNVKHGGLYETAFGLTLGEIINDIGGGTLTGRP-VKAVQVGGPLGAYFPP-S 393 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + DY+ G +G A ++V D S D++K F ESCG+CTPCR G+ Sbjct: 394 LFDTVFDYEAFTAAGGLIGHAGIVVFDDSADMLKQARFAMEFCAVESCGKCTPCRIGSTR 453 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF------RPL 411 + ++R+ KGI ++ LL ++ ++ ++CALG +P+ + +F PL Sbjct: 454 GVETVDRIAKGIEPEKNKVLLEDLCNTMKFGSLCALGGFTPYPVMSAMTHFPQDFAPAPL 513 Query: 412 IE 413 +E Sbjct: 514 VE 515 >gi|332981956|ref|YP_004463397.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON] gi|332699634|gb|AEE96575.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON] Length = 434 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 233/393 (59%), Gaps = 7/393 (1%) Query: 20 LSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ +S G + + K L K +D II+EVKASGL GRGGA F TG+K + D Sbjct: 21 ISEYISTGGYKALVKALLTMKPQD-IIDEVKASGLLGRGGAAFPTGLKMQMVHDTPGDV- 78 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE EPGT KDR +M +P+ L+EG ++A +A+GA +IY+RGE+ + E ++ Sbjct: 79 KYVVCNADEGEPGTFKDRYLMEGDPYQLVEGIILAGYAVGAQKGYIYIRGEYDQAIELMK 138 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AV++ G LG N K ++ DI V GAGAYICGEE AL+ESLEGK G+PR KPP+P Sbjct: 139 NAVEQTRKIGYLGDNILKQRFNFDIEVRSGAGAYICGEEFALIESLEGKSGRPRYKPPYP 198 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+ PT +NNVE++ +P I+ G+ + G +++ GTKL +SG++ E Sbjct: 199 PISGLWDRPTLINNVETLVNIPYIVSNGSKAFRSAGTDSSAGTKLICLSGNIVNRGVFEV 258 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT ++I G+ + L + GG+S C+P+ M +D+ +++ G +G Sbjct: 259 PFGITLKDIIHDIGQGVPDERE-LKMIQIGGASGSCIPS-DMLDVKLDFADMRKNGLSMG 316 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + A+I D S +I + L F+ HESCG+CTPCREG + +++ KG A D Sbjct: 317 SGAIIAFDDSRCVIDIVKSLLKFFAHESCGKCTPCREGNPQLYNLIDDFSKGSATPSHYD 376 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +L +++ ++ +C LG A+ PI ++ F+ Sbjct: 377 VLQSLTQTMQQAALCGLGQASPMPIVSTLQYFK 409 >gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. 18P13] Length = 597 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 134/347 (38%), Positives = 200/347 (57%), Gaps = 4/347 (1%) Query: 65 KWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW + + Y+ NADE +PG DR ++ +PH ++E IA +AIGA +I Sbjct: 175 KWQLARNIVPNADQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGATQGYI 234 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ + L+ A+ + GLLG N + DI + GAGA++CGEETAL+ S+ Sbjct: 235 YVRAEYPIAVQRLEIAIKQAREYGLLGKNIFGTDFSFDIGLRLGAGAFVCGEETALMTSI 294 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ +GA W++ G E ++GTK+F Sbjct: 295 EGNRGEPRPRPPFPAEKGLFQKPTILNNVETYANIPQIILKGADWFASMGTEKSKGTKVF 354 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ++ G ++ VE M T +IE+ GGI G A GG S C+PA M AI Sbjct: 355 ALGGKIHNTGLVEVPMGTTLRTVIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHMDIAI 413 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT M ++ Sbjct: 414 -DYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKRMYEIL 472 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +++ KG A ++D L E+ +++ ++C LG A P+ ++ FR Sbjct: 473 DKITKGKATLEDLDKLEELCYHVKANSLCGLGQTAPNPVLSTLRYFR 519 >gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 624 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 155/398 (38%), Positives = 236/398 (59%), Gaps = 7/398 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + S+ + ++ G ++ ++K L ++ + II+E+ S LRGRGG GF G KW+ + + Sbjct: 153 IDATSIKEYLAVGGYEALEKALFDRDDEGIIHEITESNLRGRGGGGFPAGRKWTQVRRQ- 211 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + Y+V N DE +PG DR IM +PH ++EG +IA+ A A +IYVR E+ Sbjct: 212 VEPTKYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAAKACKAREGYIYVRAEYPLAI 271 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L+ A+DE GLLG + LG D DI ++ GAGA++CGE +AL S+EGK+G PR+ Sbjct: 272 SRLRKAIDEAREYGLLGEHI-LGTDFSFDIKINRGAGAFVCGEGSALTASIEGKRGMPRV 330 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPP GL+ PT +NNVE+ A VP I+ G WY G G E + GTK F+++G++ Sbjct: 331 KPPRTVEQGLFEKPTVLNNVETFANVPLIILNGVDWYKGIGPEKSPGTKAFALTGNIENT 390 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E+I GG+R G N AV GG S CL + +D+D LK+ Sbjct: 391 GLIEVPMGTTLREVIFDIGGGMRDGA-NFKAVQIGGPSGGCLTS-DDLDLPLDFDSLKKA 448 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT M+ ++ER+V G + Sbjct: 449 GAMIGSGGLVVMDENTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERIVVGGGE 508 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++D L E++ I +C LG AA+P+ IK F+ Sbjct: 509 ENDLDQLLELADTISSTALCGLGKTAAFPVVSTIKKFK 546 >gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] Length = 635 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 149/384 (38%), Positives = 224/384 (58%), Gaps = 6/384 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ D +L K + +I+ +K SGLRGRGG GF TG KW F K +D Y+V NADE Sbjct: 177 GYMALADSLLHKKPEEVIDVIKRSGLRGRGGGGFPTGKKWEFAHKQQADM-KYVVCNADE 235 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR IM +PH+++E + ++IG+ +Y+R E+ + L+ A+ + Sbjct: 236 GDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGSPKGLVYIRAEYPLAIQRLKIAIAQAREY 295 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GLLG N + DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G P Sbjct: 296 GLLGKNIFGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAEAGYLGKP 355 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVE++A +P IL +G W++ G E ++GTK+F+++G +N +E M T E+ Sbjct: 356 TNVNNVETLANIPIILTKGVEWFASIGTERSKGTKVFALAGKINNVGLIEVPMGTTLREV 415 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 I + GG G AV GG S CL + I D+D L GS +G+ +IVMD Sbjct: 416 IYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAEGSMMGSGGMIVMDE 473 Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G +++D L + K Sbjct: 474 D-DCMVSVSRFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRGTMKDLDALSTLGKV 532 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 I+ +C LG + P+ + NF Sbjct: 533 IKDTALCGLGQTSPNPVLSTLNNF 556 >gi|326202423|ref|ZP_08192292.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325987541|gb|EGD48368.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 575 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 145/393 (36%), Positives = 229/393 (58%), Gaps = 5/393 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + +S+ ++ G + + K L + D +++ VK SGLRGRGG GF TG+KW K D+ Sbjct: 156 EDISEYIALGGYQALGKALTQMSADEVVDTVKKSGLRGRGGGGFPTGLKWEITRKQ-QDK 214 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 +++ NADE +PG DR I+ +PH++IE I ++AIGA +Y+R E+ E L Sbjct: 215 EKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGADKGIVYIRAEYPLAIERL 274 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+++ GLLG ++ DI + +GAGA++CGEETAL+ S EGK+G+P KPP+ Sbjct: 275 TKALEQARELGLLGKGIFGTDFNFDITLKYGAGAFVCGEETALINSCEGKRGEPNYKPPY 334 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G +G PT VNNVE+ A +P I+ +GA W++ G E ++GTK+F+++G +N VE Sbjct: 335 PAEEGYWGHPTCVNNVETFANIPVIMTKGAEWFASMGTEKSKGTKVFALAGKINNVGLVE 394 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M IT E+I GGI G AV GG S + + I DYDGL ++G+ + Sbjct: 395 VPMGITLREIIFDIGGGIPHG-KKFKAVQTGGPSGGVITEKNLDTPI-DYDGLLKIGTMM 452 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD +++ F E+CG+C P R GT + ++ ++ G A ++ Sbjct: 453 GSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKRLFEMLHKIASGEATMDDL 512 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 D L +++ ++ ++C L A P+ +K+F Sbjct: 513 DALKQLAYMVKDSSLCGLCQTAPNPVVSTMKHF 545 >gi|222087421|ref|YP_002545958.1| formate dehydrogenase [Agrobacterium radiobacter K84] gi|221724869|gb|ACM28025.1| formate dehydrogenase [Agrobacterium radiobacter K84] Length = 518 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 156/424 (36%), Positives = 225/424 (53%), Gaps = 17/424 (4%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F ++ SL D G + + + I+ EV SGLRGRGGAG Sbjct: 98 FLREQTRLTFARCGVIESLSLEDYEVHGGLKGLRRAVGMAAADIVKEVMDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 F TG+KW K D P Y+V NADE + GT DR IM +P LIEG IA A Sbjct: 158 FPTGIKW----KTVLDAPGARKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAT 213 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175 GA F+Y R E+ + AV+ +G+LG++ G DI + GAGAY+CGEE Sbjct: 214 GATKGFVYARSEYPHAIAVMTEAVEVARGAGILGASVLGSGKAFDIEIRTGAGAYVCGEE 273 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TALL SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG Sbjct: 274 TALLNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGATFYRDFGMGR 333 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 +RGT I+G+V Y E + ++ ++++K GG G + AV GG P Sbjct: 334 SRGTIPLQIAGNVKYGGLYETAFGLSLGDIVDKIGGGTATGRP-VKAVQVGGPLGAYFPR 392 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 393 -ALFDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGS 451 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR------ 409 + +++ +GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 452 TRGVETADKIARGIEPEKNRVLLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDFSPV 511 Query: 410 PLIE 413 PLIE Sbjct: 512 PLIE 515 >gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis 108] gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis 108] Length = 598 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 243/411 (59%), Gaps = 8/411 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++ + + K+L E + +++ VK SGLRGRGG GF TG+KW F K Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVVDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ ++YVR E+ Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+++ GLLG N LG ++ DI + GAGA++CGEETAL+ S+EG +G+PR Sbjct: 245 KRLEIAIEQARQYGLLGKNI-LGTNFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++GTK+F++ G VN Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E++E GG G AV GG S C+PA M I D+D L + Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ +IVMD T ++ F ESCG+C PCR GT M+ +++++ G Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +++ L E++ +I+ +C LG A P+ ++ FR E + + RC Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531 >gi|327188943|gb|EGE56135.1| formate dehydrogenase protein, beta subunit [Rhizobium etli CNPAF512] Length = 553 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 222/411 (54%), Gaps = 7/411 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SLSD + G + + + I+ EV SGLRGRGGAG Sbjct: 133 FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 192 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +R Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 193 FPTGIKWKTVLDAPGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 251 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETA 177 FIY R E+ ++ AV +G+LG S LG DI V GAGAY+CGEETA Sbjct: 252 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGP-SVLGSARAFDIEVRTGAGAYVCGEETA 310 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +R Sbjct: 311 LLNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSR 370 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT I+G+V Y E + ++ +++++ GG G + AV GG P Sbjct: 371 GTIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPR-A 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 429 LFDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTR 488 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + +++ +GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 489 GVETADKIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 539 >gi|163857997|ref|YP_001632295.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella petrii DSM 12804] gi|163261725|emb|CAP44027.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella petrii] Length = 522 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 150/410 (36%), Positives = 227/410 (55%), Gaps = 6/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ + + L I++EV ASGLRGRGGA F Sbjct: 101 LKKQQRLTFARVGITDPLSIDDYVAHDGLQGLRRALCLTPQQIVDEVSASGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +++ Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVLTTPAEQ-KYIVCNADEGDSGTYSDRLLMEGDPYVLIEGMAIAGLAVGATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + +L A+ +G LG + + G D+ V GAGAYICGEET+LL Sbjct: 220 GYIYVRSEYPQAIATLNEAIARARQAGWLGDDIQGSGRRFDLEVRKGAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA++Y +G ++GT Sbjct: 280 ESLEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLASVPIILARGAAYYRDYGVGRSQGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKHGGLVEAAFGLTLRELLYDFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G ++ D + D+ + F ESCG+CTPCR G + Sbjct: 399 -VPLDYEAYAAISAMVGHGGIVAFDDTVDMARMARYAMEFCAVESCGKCTPCRIGAVRGV 457 Query: 360 RVMERL-VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++++ +G ++++ LL ++ + G ++CALG +P+ + +F Sbjct: 458 ETLDKIATRGAQHEQQVHLLRDLCDTMLGGSLCALGGMTPYPVLSALNHF 507 >gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] Length = 597 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 165/417 (39%), Positives = 243/417 (58%), Gaps = 6/417 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q R+ GL +++ + ++ + + K+L E +I+EV SGLRGRGG GF T Sbjct: 115 QKRVALRNCGLINPENIEEYIANDGYRALAKVLSEMTPQQVIDEVTRSGLRGRGGGGFPT 174 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW F D Y+V N DE +PG DR I+ +PHT++E IA +AIGA + Sbjct: 175 GKKWQFAKDAPGDV-KYVVCNGDEGDPGAFMDRSILEGDPHTVLEAMAIAGYAIGAKEGY 233 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+++ GLLG N G++ DI + +GA++CGEETALL S Sbjct: 234 IYVRAEYPLAVKRLEIAIEQARERGLLGKNILGTGFEFDIFLRLRSGAFVCGEETALLAS 293 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G+PR +PPFPA GL+G PT +NNVE+ A +P I+ GA W++ G E ++GTK+ Sbjct: 294 IEGRRGEPRPRPPFPAIEGLWGKPTLINNVETFANIPPIILNGADWFASIGTERSKGTKV 353 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F++ G +N VE M T E+I GGI G AV GG S C+PA + Sbjct: 354 FAVGGKINNTGLVEIPMGTTLREVIYDIGGGIPNG-KKFKAVQTGGPSGGCIPASLLDMP 412 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 I +YD L + GS +G+ +IVMD T ++ F + ESCG+C PCR GT M+ + Sbjct: 413 I-EYDTLTQAGSMMGSGGMIVMDEDTCMVDIAKFFLTFTQDESCGKCPPCRIGTKRMLEI 471 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +ER+ G ++ +I+LL ++KNI+ +C LG A P+ ++ FR E I + Sbjct: 472 LERITNGEGREGDIELLETLAKNIKASALCGLGQTAPNPVLSTLRYFRDEYEAHIRE 528 >gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] Length = 627 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 244/409 (59%), Gaps = 8/409 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q+R+ G + + D ++ + + KIL E + +I EV SGLRGRGG GF T Sbjct: 145 QERVTLRYCGRIDPDDIYDYIAHRGYRAISKILQEMNPEEVIKEVNDSGLRGRGGGGFPT 204 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KWSF + Y++ N DE +PG DR +M PH+++EG +IA +AIGA+ + Sbjct: 205 GRKWSFAASQPGPK-KYIICNGDEGDPGAFMDRSVMEGNPHSVLEGMMIAGYAIGANEGY 263 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLE 180 IY R E+ + ++ A+ + A GLLG+N LG D + I + GAGA++CGEETAL+ Sbjct: 264 IYARAEYPLAIKRMRKAIADAEAHGLLGNNI-LGSDFNFKINIKEGAGAFVCGEETALIA 322 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G PR +PPFPA GL+GCPT +NNVE++A + I+ GA + +G + GTK Sbjct: 323 SIEGERGMPRPRPPFPAVKGLWGCPTIINNVETLANLRYIINNGAGEFKKYGTAGSSGTK 382 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 F+++G V VE M +T E++ GG+R G +V GG S CL ++ Sbjct: 383 TFALAGQVQNTGLVEVPMGVTLREVVFDIGGGLRDG-KKYKSVQIGGPSGGCLTEDKLD- 440 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DYD L ++G+ +G+ ++VM T +++ F ++ESCG+C PCREGT ++ Sbjct: 441 LPLDYDELMKVGAMIGSGGLVVMGDDTCMVETAKFFMGFVQNESCGKCVPCREGTKQLLA 500 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ +G + ++DLL E+++N++ ++C LG A P+ ++ FR Sbjct: 501 LLTKITEGKGTEADLDLLEELAQNVKDGSLCGLGKTAPNPVLTTLRYFR 549 >gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 626 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/381 (40%), Positives = 215/381 (56%), Gaps = 23/381 (6%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+ ++ SGLRG GGAGF+TG KW F ++R +++ NADE EPGT KDR ++ P Sbjct: 228 IISMIEESGLRGCGGAGFTTGRKWRFAAAERTER-SFVICNADEGEPGTFKDRVLLTERP 286 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDV 159 H LIEG IA+ A+GA +Y+RGE++ RE L+ ++E GLLG + LG +D Sbjct: 287 HLLIEGMTIAARAVGAKEGILYLRGEYVYLRELLEQVLEERRRRGLLG-KAILGTKRFDF 345 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI + GAGAYICGEE AL+ S EG G+P+ +PPFP N G G PT VNNVE+ Sbjct: 346 DIRIQMGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPTVVNNVETFCHAAR 405 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL +GA W+ G E + GTKLFS+ G P E + EL+E + GG D Sbjct: 406 ILDQGAKWFHDIGTEGSHGTKLFSVCGDCLNPGIYELPYGHSVWELLE-----MVGGQDA 460 Query: 280 LLAVIPGGSSVPCLPAGQM--RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 AV GG P+G M R + ++ +G A+IV + +I++ + Sbjct: 461 -AAVQVGG------PSGAMIARDSFHRKLTFDDLATG---GAIIVFNGQRNILEIVDYYM 510 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F+ HESCG CTPCR G ++ + +E+ KG+A +ID L ++S I + C LG + Sbjct: 511 SFFVHESCGYCTPCRVGNVFLQKAIEKFRKGLANPEDIDYLKDLSGTIIETSRCGLGMTS 570 Query: 398 AWPIQGLIKNFRPLIEERIDQ 418 P+ + NF PL+ + Q Sbjct: 571 PNPVLSTLANF-PLVYSAMTQ 590 >gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxidans DMS010] gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxydans DMS010] Length = 565 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 214/368 (58%), Gaps = 20/368 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRH 100 +++ + SGLRG GGAGF G KW ++ D+P + VN DE EPGT KD+ + Sbjct: 211 VLDVMDDSGLRGLGGAGFPVGRKW----RIVRDQPAPKLMAVNIDEGEPGTFKDKYYLDR 266 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 +PH +EG +IA++A+G +IY+R E+ RE L+ + + A+ + + KL Sbjct: 267 DPHCFLEGTLIAAWAVGIEEVYIYLRDEYAAIREMLEVEMAKLQANPPVANMPKLH---- 322 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + GAGAYICGEE+A++ES+EGK+G PRL+PPF A VGL+G PT +N+ES+ V I Sbjct: 323 --LRRGAGAYICGEESAMIESIEGKRGMPRLRPPFVAQVGLFGRPTLEHNMESLYWVRDI 380 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 L +GAS + GR G + FS+SG VN P IT ELI+++C G+ G + Sbjct: 381 LEKGASCMTDHGRHGRTGLRSFSVSGRVNKPGVHLAPAGITMRELIDEYCDGMLDGHE-F 439 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 PGG+S LPA M +D+D L + G +G+AAV+V + F+ Sbjct: 440 YGYFPGGASGGILPAS-MGDIPLDFDTLNDHGCFIGSAAVVVFSDKDQARELAVNAMKFF 498 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 + ESCGQCTPCR GT + +M+ ++ + DLL E+S+ + +IC LG AA P Sbjct: 499 EDESCGQCTPCRVGTAKAVNLMQE------KQWDQDLLEELSQVMVDASICGLGQAAPNP 552 Query: 401 IQGLIKNF 408 ++ +IK F Sbjct: 553 LRCVIKYF 560 >gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583] gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583] gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium 6_1_63FAA] Length = 624 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 240/426 (56%), Gaps = 8/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI N +SL + ++ G ++ + K L + + ++NEV S LRGRGG Sbjct: 136 FIAKQTRIALENCGKFDAESLDEYIASGGYEALSKALFDMTPEDVLNEVDKSKLRGRGGG 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + H++V N DE +PG D +M +P+ LIEG IA++A GA Sbjct: 196 GFPTGRKWKQVAAHKDVAEHFVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMTIAAYATGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176 +IYVR E+ L+ A+ + GLLG + LG D +H GAGA++CGE + Sbjct: 256 QNGYIYVRAEYPLSVARLRKAIRQAEEKGLLGDHI-LGTDFQFHMHINRGAGAFVCGEGS 314 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL S+EG +G PR+KPP + GL+ PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 315 ALTASIEGDRGMPRVKPPRTVDKGLWAKPTVLNNVETFANVPGIVLKGADWFKTIGTEGS 374 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK FSI+G + +E M T E+I GGI+GG D A+ GG S CL Sbjct: 375 PGTKTFSITGAIENTGLIEVPMGTTLREIIYDIGGGIKGGGD-FKAIQIGGPSGGCLTKE 433 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+D +K+ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 434 HLDVG-LDFDSVKKYNAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTK 492 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 493 RMLEILERIVNGEGKLEDLDTLEELAAMVKNMALCGLGKSAPLPVISTLKTFRKEYEEHI 552 Query: 417 DQYHRC 422 + H+C Sbjct: 553 VE-HKC 557 >gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] Length = 598 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 243/411 (59%), Gaps = 8/411 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++ + + K+L E + +I+ VK SGLRGRGG GF TG+KW F K Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ ++YVR E+ Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+++ GLLG N LG ++ DI + GAGA++CGEETAL+ S+EG +G+PR Sbjct: 245 KRLEIAINQAREYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++GTK+F++ G VN Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E++E GG G AV GG S C+PA + I D+D L + Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLIDTPI-DFDSLTAL 421 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ +IVMD T ++ F ESCG+C PCR GT M+ +++++ G Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITTGNGT 481 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +++ L E++ +I+ +C LG A P+ ++ FR E + + RC Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531 >gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] Length = 570 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 206/372 (55%), Gaps = 21/372 (5%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ I+ + + LRG GGAGF TG KW + + P + VN DE EPGT KDR Sbjct: 209 QTSKEDILKALDGASLRGLGGAGFPTGRKWRAV--MGEPGPRLMAVNGDEGEPGTFKDRF 266 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +PH +EG +I + + A +IY+R E+ RE L + + G Sbjct: 267 YLETDPHRFLEGMLIGAHIVDAGEVYIYLRDEYPASREILAREIAKLPPGG--------- 317 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + + GAGAYICGEE++LLES+EGK+G PR KPP+P VGL+G PT +NNVE++ Sbjct: 318 --PTLHLRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNVETLWW 375 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V I+++G W+ GR G + +S+SG V P +T ELIE+ C G+ G Sbjct: 376 VRDIVQKGGDWWQSHGRNERHGLRSYSVSGRVKNPGVKLAPAGVTIKELIEEFCDGMADG 435 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 A +PGG+S LPA M +D+ L++ G +G+AAV+V+ DI A L Sbjct: 436 -HQFRAYLPGGASGGILPA-SMNDIPLDFGTLEKYGCFIGSAAVVVLSDKDDIKGAALNL 493 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 F++ ESCGQCTPCR GT +ME V DLL E+S+ + +IC LG A Sbjct: 494 MKFFEDESCGQCTPCRIGTQKAAALMESHV------WNRDLLMELSQTMRDASICGLGQA 547 Query: 397 AAWPIQGLIKNF 408 A+ P+ +I+ F Sbjct: 548 ASNPLTSVIRYF 559 >gi|328543746|ref|YP_004303855.1| NADH dehydrogenase (Quinone) [polymorphum gilvum SL003B-26A1] gi|326413490|gb|ADZ70553.1| NADH dehydrogenase (Quinone) [Polymorphum gilvum SL003B-26A1] Length = 525 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/405 (38%), Positives = 216/405 (53%), Gaps = 8/405 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + K + I+ V ASGLRGRGGAGF TG+KW + + + Sbjct: 121 SLDDYRALGGLAGLQKAVAMPPAEIVETVTASGLRGRGGAGFPTGIKWKTVLEAAGPQ-K 179 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A GA ++Y+R E+ ++ Sbjct: 180 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGATRGYVYLRSEYPDAIAVMRE 239 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AVD G+LG S +D++I V GAGAY+CGEETALL SLEGK+G R KPP Sbjct: 240 AVDRARRHGVLGPRVLGSPHAFDMEIRV--GAGAYVCGEETALLNSLEGKRGVVRAKPPL 297 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ G G PT VNNV S+A VP IL RGA++Y FG +RGT I+G+V Y E Sbjct: 298 PAHHGFLGRPTVVNNVISLASVPIILDRGAAFYRDFGMGRSRGTIPIQIAGNVRYGGLFE 357 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +T E+++ GG G + AV GG P + DY+ + Sbjct: 358 TAFGLTLGEIVDDIAGGTASGR-PVKAVQVGGPLGAYFPR-ALFDTPFDYEEFARRDGLI 415 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G A V+V D S D++ F ESCG+CTPCR G + V +R+ G + +I Sbjct: 416 GHAGVVVFDDSVDMLSQARFAFEFCAVESCGKCTPCRIGAVRGVEVADRIAAGQDPEAQI 475 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 L+ ++ ++ ++CALG +P+ + +FR + R + H Sbjct: 476 ALIADLCTTMKHGSLCALGGFTPYPVMSALTHFRQDFQPRSPRSH 520 >gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 569 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 209/368 (56%), Gaps = 16/368 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D ++ ++ SGLRG GGAGF TG KW + + P + VN DE EPGT KDR + Sbjct: 213 DAVLATMEDSGLRGLGGAGFPTGRKWRIVRGEAA--PRLMAVNIDEGEPGTFKDRVYLER 270 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 +PH +EG +IA+ + +IY+R E+ R L A+ + L + + Sbjct: 271 DPHRFLEGMLIAARVVDVAAIYIYLRDEYAGCRALLAEALQQ------LQQDPPVARLPR 324 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT +N E++ V I Sbjct: 325 IELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYWVRDI 384 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + +GA W++ GR +G + FS+SG V P IT ELI+++CGG+ G Sbjct: 385 IEKGAEWFASQGRNGRKGLRSFSVSGRVRRPGVHLAPAGITVRELIDEYCGGMLDG-HAF 443 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 +PGG+S LPA M +D+D L+ G +G+AA++++ +A L F+ Sbjct: 444 YGYLPGGASGGILPAA-MGNIPLDFDTLQPYGCFIGSAAIVILSDHDSATQAARNLMHFF 502 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 KHESCGQCTPCR GT + ++ + K ++ L ++S + +IC LG AA P Sbjct: 503 KHESCGQCTPCRTGTAKTLDLIRQ------PKWDLAALDDLSAVMRDASICGLGQAAPNP 556 Query: 401 IQGLIKNF 408 + +IK F Sbjct: 557 VDCVIKYF 564 >gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 597 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 166/384 (43%), Positives = 231/384 (60%), Gaps = 6/384 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E +I+EVK SGLRGRGG GFSTG KW F D Y+V NADE +PG D Sbjct: 147 LTEMTPQQVIDEVKQSGLRGRGGGGFSTGTKWQFAANAQGDI-KYVVCNADEGDPGAFMD 205 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 R I+ +PHT++E IA +AIGA +IYVR E+ + L+ A+++ GLLG N Sbjct: 206 RSILEGDPHTVLEAMEIAGYAIGASEGYIYVRAEYPIAVKRLEIAIEQARNHGLLGKNI- 264 Query: 155 LGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 LG D DI + G+GA++CGEETALL S+EG++G+PR +PPFPAN GL+ PT +NNVE Sbjct: 265 LGTDFSFDIFIRLGSGAFVCGEETALLASVEGRRGEPRPRPPFPANKGLWDKPTIINNVE 324 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 + A VP I+ +GA W+S G E ++GTK+F++ G +N+ VE M T E+I CGG Sbjct: 325 TYANVPEIILKGAKWFSSVGSEKSKGTKVFAVGGKINHTGLVEIPMGTTLKEVIYDICGG 384 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 I AV GG S CLPA + I +YD L + GS +G+ +IVMD ++ Sbjct: 385 IPNN-KKFKAVQTGGPSGGCLPASLLDMPI-EYDTLIQAGSMMGSGGMIVMDEDNCMVDI 442 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 F + ESCG+C PCR GT M+ ++ER+ G ++ +I+LL ++ +I+ +C Sbjct: 443 AKFFLTFTQEESCGKCPPCRIGTKRMLEILERITNGEGEEGDIELLENLANSIKASALCG 502 Query: 393 LGDAAAWPIQGLIKNFRPLIEERI 416 LG A P+ I+ FR E I Sbjct: 503 LGQTAPNPVLSTIRYFRDEYEAHI 526 >gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum ferrodiazotrophum] Length = 617 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 151/420 (35%), Positives = 235/420 (55%), Gaps = 6/420 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q +I ++ GL S+ D ++ + + K+L E D +I+E+ SGLRGRGG GF T Sbjct: 135 QVKIVSSRCGLIDPSSIDDYIATDGYKALRKMLTEMTPDMVIDEMTKSGLRGRGGGGFYT 194 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCA 121 G+KW + + Y+V NADE +PG DR I+ +PH+++EG + AS+AIG A Sbjct: 195 GLKWK-LTRQSQGEEKYVVCNADEGDPGAFMDRSILEGDPHSVLEGMLAASYAIGNAKKG 253 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY R E+ + L+ A+D+ LG N G+ DI + GAGAY+CGEETALL Sbjct: 254 YIYCRAEYPLAIKRLRKAIDDARERNFLGDNILGTGFSFDITIKEGAGAYVCGEETALLA 313 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SL G++G P KPPFPA G++G PT +NNVE++ V I+ G WY+ +G E +GTK Sbjct: 314 SLMGERGMPWPKPPFPAQKGVWGKPTVINNVETLGNVGHIILNGGDWYASYGSEKTKGTK 373 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 F+++G V +E ++ GG+ A GG S C+PA + Sbjct: 374 TFALTGSVKNSGLIEVPAGTPLRSIVFDIGGGMLEKKIPFKAAQLGGPSGGCIPASGLDT 433 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + D++ + G+ +G+ +++MD ++ I+ F + ESCG+CTPCR G+ M+ Sbjct: 434 PV-DFENVIAAGAIMGSGGIVIMDEASCIVDTAKFFLKFTQDESCGECTPCRVGSKIMLE 492 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G Q+ ++D L +S ++ ++C LG AA P+ I+ FR E I H Sbjct: 493 ILTRITEGKGQEGDLDELIRLSMYVKSNSLCGLGAAAPNPVLSTIRYFREEFEAHIRDKH 552 >gi|126666308|ref|ZP_01737287.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17] gi|126629109|gb|EAZ99727.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17] Length = 450 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/379 (40%), Positives = 225/379 (59%), Gaps = 9/379 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHE 101 II+ +K + +RGRGG GFS G+KW + +V P YL+ NADE EPGT KDR ++ Sbjct: 67 IIDTMKQANVRGRGGGGFSAGVKWG-LTQVGDHLPRGYLICNADEMEPGTFKDRLLLEQL 125 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 PH LIE +IA +A + +I++RGE++ S+ A++E +GLLGS+ + G+D D Sbjct: 126 PHLLIESMIIAGYANRSCYGYIFLRGEYVEAARSVALAIEEARQAGLLGSDIAGSGFDFD 185 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I +H GAG YICGEETAL+ SLEGK+ PR KPPFP G +G PT VNNVE++ VP++ Sbjct: 186 IALHTGAGRYICGEETALINSLEGKRANPRAKPPFPGQSGAWGKPTVVNNVETLCNVPSV 245 Query: 221 LRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 ++ GA WY G G + GTKL+ +SG V P E + + E++E+ GG+R G Sbjct: 246 MQHGADWYQGLSGGLSEDGGTKLYGVSGLVERPGLWELPIGTSGREILER-AGGMRQG-H 303 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 L A +PGG S L + MD+ + + GS LGT + V+ I+ + L Sbjct: 304 TLKAWLPGGGSTGFLLPEHLD-LPMDFGTIGQYGSRLGTGLIAVVSERQSIVSLLRNLEQ 362 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397 F+ ESCG CTPCR+G W +++++ L +G + I++L + + + RT CA A Sbjct: 363 FFARESCGWCTPCRDGLPWTVKILQALERGEGKPEYIEILEQHTLGLNPARTFCAHAPGA 422 Query: 398 AWPIQGLIKNFRPLIEERI 416 P++ I++FR E I Sbjct: 423 MMPLESAIRHFRADFEAGI 441 >gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 569 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/402 (38%), Positives = 242/402 (60%), Gaps = 9/402 (2%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + ++ G + + K L E +++EVK SGLRGRGG GF TG+KW F+ SD+ Sbjct: 154 SIEEYIAVGGFKALAKTLQEMTPQQVVDEVKKSGLRGRGGGGFPTGLKWQFVLDQKSDQ- 212 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V N DE +PG DR ++ +P+++IE I +A+GA+ + Y+R E+ + + Sbjct: 213 KYVVCNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGANKGYAYIRLEYPKAIDHFN 272 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+ GLLG+N S +D++I V GAGA++CGEETALL S+EG++G+PR +PP Sbjct: 273 KALARAREVGLLGNNILESDFSFDIEIRV--GAGAFVCGEETALLASIEGRRGEPRPRPP 330 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GL+ PT +NNVE+ A + I+ G WY+ G E ++GTK+F+++G +N V Sbjct: 331 FPAVSGLFEKPTLLNNVETYASICPIIINGGEWYATMGTEKSKGTKVFTLAGKINNTGLV 390 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + +T E++E GG+ G A GG S C+PA + I DY+ L +GS Sbjct: 391 EIPLGLTLREMVEDIGGGVPNG-KAFKAAQTGGPSGGCIPAAYLDTPI-DYENLAALGSI 448 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +I++D ST ++ F + ESCG+CTPCR GT M+ ++ER+ KG+ + + Sbjct: 449 VGSGGMIIVDESTCMVDLAKFYLGFTQDESCGKCTPCRIGTKRMLEILERITKGLGKPED 508 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +DLL E++ +I+ +C LG A PI ++ FR E I Sbjct: 509 LDLLVELANSIKASALCGLGQTAPNPILSTLRYFRDEFEAHI 550 >gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1] gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 563 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 212/368 (57%), Gaps = 19/368 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ ++ +GLRG GGAGF G KW + P ++VVN DE EPGT KDR + +P Sbjct: 208 VIDTLERAGLRGMGGAGFPAGRKWRTLRD--QPAPRHVVVNIDEGEPGTFKDRHYLESDP 265 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +EG +IA++AI A ++Y+R E+ R L+ + E A G + Sbjct: 266 HRFLEGALIAAWAIEADAIWLYLRDEYAAARALLRQCLAELQAD-------PPGPLPAMH 318 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 + GAGAYICGEE+AL+ES+EGK+G PRL+PP A VGL+G PT +N+E++ V IL Sbjct: 319 LRRGAGAYICGEESALIESIEGKRGLPRLRPPLVAQVGLFGHPTLAHNLETLHWVRDILA 378 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 GA W++ GR +G + +S+SG V +P IT ELI+++CGG+ G + L A Sbjct: 379 HGADWFADQGRHGRQGLRSYSVSGRVRHPGVHLAPAGITLRELIDEYCGGMAPGHE-LKA 437 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG--LGTAAVIVMDRSTDIIKAIWRLSVFY 340 PGG+S LPA +D+D L+ +G+AAVIV+ + + +A F+ Sbjct: 438 FFPGGASGGILPAAAA-DTPLDFDTLQAYDPHCFIGSAAVIVLSQQDSVREAALNAMRFF 496 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 +HESCGQCTPCR GT +M R V + LL E++ + +IC LG AA P Sbjct: 497 QHESCGQCTPCRVGTAKAAALMARPVW------DAPLLEELADCMADASICGLGQAAPNP 550 Query: 401 IQGLIKNF 408 ++ ++K F Sbjct: 551 LRCVLKYF 558 >gi|295677293|ref|YP_003605817.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] gi|295437136|gb|ADG16306.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] Length = 524 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/391 (37%), Positives = 214/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L D + SGLRGRGGA F G+KW + + Sbjct: 116 SIDDYVAHGGLEGLRNALRTDGDAACEALIQSGLRGRGGAAFPAGIKWRTV-RGAKAAQK 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG VIA GA +IYVR E+ +L+A Sbjct: 175 YVVCNADEGDSGTFSDRLVMESDPYVLIEGMVIAGIVTGATVGYIYVRSEYPHSIATLEA 234 Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G LG S G ++ V GAG+Y+CGEETA+LESLEGK+G R KPP PA Sbjct: 235 AIARARTAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAMLESLEGKRGIVRAKPPVPA 294 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGLYG PT +NNV ++A VP I RGA++Y FG +RGT F ++G++ VE + Sbjct: 295 LVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNIKRGGLVELA 354 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T +L++ GG G AV GG LP Q MDY+ +G+ +G Sbjct: 355 FGVTLRQLLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVIGH 412 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D ++++ + F ESCG+CTPCR G+ + V+ R+ G R++ L Sbjct: 413 GGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIARIRNGDTSTRQVQL 472 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++CA+G +P+ + +F Sbjct: 473 LRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 503 >gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] Length = 628 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 218/368 (59%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 +I E+K SGLRGRGGAGF TG+KW K + ++V NADE +PG DR ++ + Sbjct: 185 VIEEMKKSGLRGRGGAGFPTGVKWESASKNPAVNGKKFIVCNADEGDPGAFMDRSLLEGD 244 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 P++++E IA +A+GA +IY+R E+ + L+ A+ + +G+LG N G++ Sbjct: 245 PNSVLEAMAIAGYAVGASQGYIYIRAEYPLAIDRLKIAIAQAEEAGVLGDNILGTGFNFK 304 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + +GAGA++CGE TAL+ S+EGK+G+PR+K + GL+ PT+VNNVE+ VP I Sbjct: 305 IELKYGAGAFVCGEGTALINSIEGKRGEPRMKTFSSSKHGLWQAPTSVNNVETFGNVPAI 364 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + +GA W++ +G E+++GTK+F++ G VN VE M T E++ + GGI G + Sbjct: 365 INKGADWFASYGTEDSKGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPNGKE-F 423 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S C+ A + I D+ L +GS +G+ ++V+D + ++ F Sbjct: 424 KAVQTGGPSGGCISARDLDTPI-DFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFT 482 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+CTPCR G ++ ++ ++ G + ++ L +++ I+ ++C LG A P Sbjct: 483 VDESCGKCTPCRIGNKRLLEMLTKICDGKGTEEDLADLKDLALTIKNTSLCGLGKCAPNP 542 Query: 401 IQGLIKNF 408 + + F Sbjct: 543 VLSTLDCF 550 >gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] Length = 657 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 150/408 (36%), Positives = 220/408 (53%), Gaps = 51/408 (12%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM--------------------------- 69 E + ++ ++ SGLRG GGAGF G KW + Sbjct: 234 EMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAALAARRAAPSEATAPVPGEGGGH 293 Query: 70 -------PKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 P+ +R + VN DE EPGT KDR + +PH +EG +IA+ +G Sbjct: 294 LPPGGSGPREAEERGGTAVMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGTEA 353 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+R E+ R LQ A+D+ A L + I + GAGAYICGEE+A++E Sbjct: 354 VYIYLRDEYHGCRALLQKALDDLRAE----PPCPLPH---IELRRGAGAYICGEESAMIE 406 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PR++PP+ A VGL+G PT +N E++ V I+ RG W++ FGR +G + Sbjct: 407 SIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRDIVERGPQWFASFGRNGRKGLR 466 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 FS+SG V +P IT ELI+++CGG+ G L A +PGG+S LPA + Sbjct: 467 SFSVSGRVKHPGVKLAPAGITVQELIDEYCGGMLDG-HQLYAYLPGGASGGILPA-HLNN 524 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L+ G +G+AAVIV+ + A + F++HESCGQCTPCR GT Sbjct: 525 IPLDFDTLQPYGCFIGSAAVIVLSQHDRARDAALNVMRFFEHESCGQCTPCRVGTAKAAA 584 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +ME A + + DLL ++++ + +IC LG AA PI+ + K F Sbjct: 585 LME------APQWDADLLDDLAQVMADASICGLGQAAPNPIRCIHKYF 626 >gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 624 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 155/415 (37%), Positives = 240/415 (57%), Gaps = 7/415 (1%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSF 68 TN Y + SL D + G + ++K+L D +++E+K SGLRGRGG GF+TG KW Sbjct: 148 TNGY-IDPTSLDDYIQAGGYQALNKVLSSMSPDEVVDEIKISGLRGRGGGGFATGAKWEI 206 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 + + Y++ N DE +PG DR +M PH++IEG VIA++A+GA +IY+R E Sbjct: 207 TREAPGEL-KYVICNCDEGDPGAFMDRSLMEGNPHSIIEGMVIAAYAVGARQGYIYIRNE 265 Query: 129 FIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 + ++ + A+ + GLLG N G+D I + G GA++CGE TAL+ S+EG+ G Sbjct: 266 YPVALKNSEIAIKKAEEKGLLGKNILGTGFDFSIKISRGGGAFVCGESTALMASIEGRTG 325 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PR + GL+ PT +NNVE++A +P I+ +GA W+ G G N++GTK+FS+ G Sbjct: 326 EPRANYIHTSEKGLWERPTLLNNVETLANIPLIINKGAEWFYGIGTGNSKGTKIFSLVGK 385 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V+ +E M IT I GG G AV GG S CLP ++ ++ D+D Sbjct: 386 VHNTGLIEVPMGITL-REIIYEIGGGIPGGKKFKAVQTGGPSGGCLPEEKLDLSV-DFDE 443 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 L GS +G+ A+IVMD ++ F + ESCG+C PCREG M ++++R+++ Sbjct: 444 LSRAGSMMGSGAMIVMDEDNCMVDIARYFLSFLEEESCGKCVPCREGLKRMRQILDRIIE 503 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 G Q +I+LL ++S+++ +C LG +A P+ I++F+ I Q RC Sbjct: 504 GKGQDEDIELLIDLSESLTMGALCGLGGSAGNPVLSTIRHFKDEYVAHI-QEKRC 557 >gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 598 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 242/411 (58%), Gaps = 8/411 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ + ++ + + K+L E + +I+ VK SGLRGRGG GF TG+KW F K Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ ++YVR E+ Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244 Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+++ GLLG N LG ++ DI + GAGA++CGEETAL+ S+EG +G+PR Sbjct: 245 KRLEIAINQAREYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+ PT +NNVE+ A +P I+ +G W++ G E ++GTK+F++ G VN Sbjct: 304 RPPFPAVKGLWSKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M T E++E GG G AV GG S C+PA M I D+D L + Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ +IVMD T ++ F ESCG+C PCR GT M+ +++++ G Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +++ L E++ +I+ +C LG A P+ ++ FR E + + RC Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531 >gi|227553185|ref|ZP_03983234.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22] gi|227177711|gb|EEI58683.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22] Length = 394 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 208/361 (57%), Gaps = 6/361 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ L ++ + Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388 Query: 385 I 385 + Sbjct: 389 V 389 >gi|39937320|ref|NP_949596.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009] gi|39651178|emb|CAE29701.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris CGA009] Length = 428 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 148/356 (41%), Positives = 207/356 (58%), Gaps = 11/356 (3%) Query: 60 FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 F T KW FM + S+R YL VN DE+EPG+ KDR +M PH LIEG IA++A Sbjct: 60 FPTANKWRFM-RTGSERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118 Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174 IGA I VR E+ +L A+ E A+GLLG + G+D+ + VH AG YI GE Sbjct: 119 IGATEVIILVRDEYRAAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGE 178 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETAL+ ++EG++ PR +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY Sbjct: 179 ETALIAAIEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFT 238 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 + GTKL+ ISG V P +E M T EL+ + GGIR G LLA PGG + Sbjct: 239 DEGGTKLYGISGCVERPQLIEAPMGSTARELLHR-AGGIRNG-RGLLAFQPGGGATAFFE 296 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 ++ +D+ K+ GS LGT A+IV+D + AI R FY ESCG CTPCR+G Sbjct: 297 KAEL-DVPLDFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408 W+ ++++ L G + +I++L++ GR+ C L A P++ ++ F Sbjct: 356 LPWVSKLLDALEAGKGTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411 >gi|15890286|ref|NP_355958.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens str. C58] gi|15158483|gb|AAK88743.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens str. C58] Length = 518 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/391 (37%), Positives = 217/391 (55%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + ++K + I+ +V SGLRGRGGAGF TG+KW + +D+ Sbjct: 117 SLEDYRNYQGMKGLEKAVTMEPLAIVAQVTESGLRGRGGAGFPTGIKWKTVADARADQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A+GA FIY R E+ + ++ Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGATKGFIYTRSEYPYAIKVMEK 235 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ G+LGS+ G D+ V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 236 AIEIARREGILGSSVLGSGRAFDMEVRMGAGAYVCGEETSLLNSLEGKRGTVRAKPPLPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV S+A +P I+ RGA++Y FG + GT ++G++ Y E + Sbjct: 296 LQGLFGKPTVVNNVISLASIPVIMDRGAAFYRDFGVGRSHGTIPIQLAGNIRYGGLYETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T +L+ GG G + AV GG P + I DY+ G +G Sbjct: 356 FGLTLGQLVNDIGGGTITGRP-VKAVQVGGPLGAYFPV-SLFDTIFDYEAFTAAGGLIGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D++ F ESCG+CTPCR G+ + ++++ GI +++ L Sbjct: 414 AGIVVFDDTADMLHQARFALEFCAVESCGKCTPCRIGSTRGVETVDKIALGIEREKNTAL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++ ++CALG +P+ +++F Sbjct: 474 LEDLCETMKFGSLCALGGFTPYPVMSALRHF 504 >gi|163846760|ref|YP_001634804.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl] gi|222524574|ref|YP_002569045.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl] gi|163668049|gb|ABY34415.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl] gi|222448453|gb|ACM52719.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl] Length = 535 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/377 (38%), Positives = 224/377 (59%), Gaps = 8/377 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I + SGLRGRGGAG+ TG+KW+ + K +R +++ NADE +PG DR ++ +P Sbjct: 156 VIQMITRSGLRGRGGAGYPTGLKWATVAKSPGER-KFVICNADEGDPGAFMDRSVLESDP 214 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159 H ++EG IA++A+GA FIYVRGE+ E LQ A+ + GLLG+ S + V Sbjct: 215 HLVLEGMAIAAYAVGAEQGFIYVRGEYPLAIERLQKAIVQARRLGLLGAQIFESGFNFRV 274 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 DI V GAGA++CGEETAL+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A + Sbjct: 275 DIRV--GAGAFVCGEETALIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANISA 332 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ G W+ G E ++GTK+F+++G + +E M IT E++E G G Sbjct: 333 IIEHGPEWFRQIGTEQSKGTKVFALTGKIRNTGLIEVPMGITLREIVEDIGDGTPDGTP- 391 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AV GG S C+PA + DY+ L +GS +G+ ++VMD T+++ F Sbjct: 392 VKAVQTGGPSGGCIPASLFDTPV-DYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEF 450 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 K ESCG+C PCR GT + ++ +L G A + ++ + + + + ++C LG +A Sbjct: 451 CKDESCGKCIPCRVGTVQLFNLLTKLRNGQAGESDLQTIEALCELMRETSLCGLGQSAPN 510 Query: 400 PIQGLIKNFRPLIEERI 416 P+ + FR E+ I Sbjct: 511 PVLSTLHYFRHEYEQLI 527 >gi|90416713|ref|ZP_01224643.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2207] gi|90331466|gb|EAS46702.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2207] Length = 515 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/391 (36%), Positives = 216/391 (55%), Gaps = 4/391 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR-PH 78 L + + + ++ L+ I+++VK SGLRGRGGA F G+KW + D Sbjct: 110 LDNYQALNGFKGLNNALKMTGQQIVDQVKDSGLRGRGGAAFPAGIKWQTVHDAGKDGCQK 169 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG ++A A+GA +IY+R E+ + L Sbjct: 170 YIVCNADEGDSGTFADRLVMEADPYQLIEGMIVAGLAVGATQGYIYLRSEYPVAHKLLNI 229 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+D A+ LG N + G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 230 AIDRAIAANFLGENIQGSGKTFYLEVRLGAGAYICGEETSLLESLEGKRGMVRAKPPLPA 289 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV ++A + TIL +GA Y FG +RGT ++G++ +E + Sbjct: 290 IEGLFGMPTVVNNVLTLAAISTILEQGADSYQNFGMGRSRGTLAIQLAGNIKRGGLIELA 349 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T E++E + G G + A+ GG LP Q MDY+ + + +G Sbjct: 350 FGVTLREVVEDYGQGTYSGRP-IRAIQVGGPLGAFLPESQWD-TPMDYEAFAAIKAMIGH 407 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ F ESCG+CTPCR G+ + V++R+V + + L Sbjct: 408 GGIVVFDDTADMAAQARFAMEFCVVESCGKCTPCRIGSVRGVEVIDRIVANENRDNNLIL 467 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L+E+ +E ++CA+G +P++ + +F Sbjct: 468 LHELCDTMEFGSLCAMGGMTPYPVRSALAHF 498 >gi|289523903|ref|ZP_06440757.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502559|gb|EFD23723.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 986 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 163/422 (38%), Positives = 245/422 (58%), Gaps = 15/422 (3%) Query: 4 DQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61 +Q RI GL + + + ++R + + K L K +I EVK+S LRGRGG GF Sbjct: 57 NQTRILLRNCGLINPERIEEYIAREGYQGLAKALYKMSPQHVIEEVKSSNLRGRGGGGFP 116 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K ++ P Y++ NADE +PG DR ++ +PH LIEG +IA +AIGA Sbjct: 117 TGVKWDLTRKNPAE-PKYVICNADEGDPGAFMDRSLIEGDPHALIEGMLIAGYAIGAQKG 175 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179 FIY R E+ + L+ A+D+ GLLG LG ++ DI + GAGA++CGEETAL+ Sbjct: 176 FIYCRAEYPLAIQRLKIAIDQAKEYGLLGEGI-LGSNFNFDIEIKEGAGAFVCGEETALI 234 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++G+PR +PPFPA GL+G PT +NNV+S A VP I+ G W+S G E ++GT Sbjct: 235 ASIEGRRGEPRPRPPFPAEKGLWGKPTNINNVKSYAFVPQIILNGHEWFSSIGTEKSKGT 294 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +F+++G V +E M T E+I G+ AV GG CLP+ + Sbjct: 295 AVFALTGKVKNTGLLEIPMGTTIGEIIFDVGEGVAKDR-QFKAVQTGGPLGGCLPSDALN 353 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + D+D L G+ +G+ +IV+D +T +++ F ESCGQCTPCR G M+ Sbjct: 354 LPV-DFDSLTASGALMGSGGMIVVDETTCMVELARFFLQFAVAESCGQCTPCRVGGNKML 412 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ KG + ++D+L E++K ++ ++CALG A P+ ++ FR D+Y Sbjct: 413 EILMRITKGQGKMEDLDMLEEIAKFMKKASLCALGQGAPNPVLSTLRYFR-------DEY 465 Query: 420 HR 421 R Sbjct: 466 ER 467 >gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB [Herminiimonas arsenicoxydans] gi|133740483|emb|CAL63534.1| NAD-dependent formate dehydrogenase beta subunit [Herminiimonas arsenicoxydans] Length = 525 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 147/409 (35%), Positives = 222/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL D ++ + + K + I+ EV SGLRGRGGA F Sbjct: 107 LKKQERLQFVRVGITDPVSLDDYLAHEGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 166 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D+ Y+ NADE + GT DR +M +P LIEG IA A+ A Sbjct: 167 PTGIKWKTVLGAEADQ-KYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVNATE 225 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ A+G LG N G ++ V AGAY+CGEETA+L Sbjct: 226 GYIYVRSEYPHSIANLNEAIVAANAAGYLGKNILGSGRTFNLQVRKAAGAYVCGEETAML 285 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S++ VP IL RGA++Y FG +RGT Sbjct: 286 ESIEGKRGLVRAKPPLPALQGLFGKPTVINNVISLSAVPLILSRGATFYKDFGMGRSRGT 345 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ Y VE++ +T EL+ GG G + AV GG +P + Sbjct: 346 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPE-SLF 403 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + S +G ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 404 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGV 463 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 VM++++ + ++I LL ++ + ++CA+G+ +P+ + +F Sbjct: 464 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHF 512 >gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 598 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 207/351 (58%), Gaps = 4/351 (1%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW F K D Y+ NADE +PG DR ++ +PH +IE IA++A GA+ Sbjct: 172 FPAGLKWEFTAKAEGDE-KYVACNADEGDPGAFMDRSVLEGDPHVVIEAMAIAAYAAGAN 230 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ E L+ A+ + +GLLG + G+D ++ + GAGA++CGEETAL Sbjct: 231 RGYVYIRAEYPIAVERLEIAIGQARENGLLGKDIFGTGFDFELEIRLGAGAFVCGEETAL 290 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR +PPFPA G++ PT +NNVE+ A VP I+ GA W++ G E ++G Sbjct: 291 INSIEGKRGMPRPRPPFPAQKGIWNKPTLLNNVETYANVPRIILNGAEWFASIGTEKSKG 350 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F++ G +N VE +M T E+I GGI G AV GG S C+ A + Sbjct: 351 TKVFALGGKINNTGLVEIAMGTTLKEVIYDIGGGIPDG-KAFKAVQTGGPSGGCITAEHL 409 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I DYD L E+GS +G+ +IVMD ++ F ESCG+CTPCREGT M Sbjct: 410 DTPI-DYDNLIELGSMMGSGGMIVMDEDNCMVDIARFFLDFTVEESCGKCTPCREGTKRM 468 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +++ + +G ++D L ++K I+ ++C LG A P+ +K FR Sbjct: 469 LELLDIISEGKGTVADLDKLESLAKTIKSSSLCGLGQTAPNPVLSTLKYFR 519 >gi|303238581|ref|ZP_07325115.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302593979|gb|EFL63693.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 574 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 146/396 (36%), Positives = 226/396 (57%), Gaps = 5/396 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + + + ++++ G ++ + L K RD +I VK SGLRGRGG GF TG+KW K Sbjct: 152 INPEDIHEAIAVGAYEAMGMALTKMSRDEVIEVVKKSGLRGRGGGGFPTGLKWEITKKQ- 210 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +++ NADE +PG DR I+ +PH++IE I ++AIGA +Y+R E+ Sbjct: 211 EGAVKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGADTGIVYIRAEYPLAV 270 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L A+ + G+LG N + D+ + +GAGA++CGEETAL+ S EGK+G+P K Sbjct: 271 ARLNIAIKQARELGVLGKNIFGTDFSFDVTLKYGAGAFVCGEETALINSCEGKRGEPDYK 330 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PP+PA G +G PT VNNVE+ A +P I+ RGA W++ G E ++GTK+F+++G +N Sbjct: 331 PPYPAEEGYWGHPTCVNNVETFANIPVIITRGAEWFASMGSEKSKGTKVFALAGKINNVG 390 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE M IT E+I GGI GG AV GG S L ++ I DYD L +G Sbjct: 391 LVEVPMGITLREIIYDIGGGISGG-KRFKAVQTGGPSGGVLTEKELDTPI-DYDSLLAVG 448 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ +IVMD +++ F E+CG+C P R GT + ++ + +G A Sbjct: 449 SMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKRLFEMLHNITQGKATM 508 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++D + +++ I+ ++C L A P+ +K+F Sbjct: 509 ADLDAMKQLAYLIKDSSLCGLCQTAPNPVISTMKHF 544 >gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM 7454] gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM 7454] Length = 526 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 145/399 (36%), Positives = 225/399 (56%), Gaps = 8/399 (2%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G++ I + R II+ +K SGLRGRGGAGF TG KW K +D Y++ NADE Sbjct: 68 GYFALNKAIFDLDRKEIIDIIKDSGLRGRGGAGFPTGRKWEAAFKQDTD-IKYIICNADE 126 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR ++ +PH+++E I + AIG+ +IYVR E+ + +SLQ A+ + Sbjct: 127 GDPGAFMDRSVLEFDPHSVLEAMAICARAIGSKQGYIYVRAEYPKAVKSLQNAIKQAREY 186 Query: 147 GLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 LLG N S +D+D+ GAGA++CGE TAL+ES+EGK+G PR K GL+G Sbjct: 187 NLLGENIMGSDFSFDIDL--RLGAGAFVCGEGTALMESIEGKRGMPRNKEFRTTVKGLWG 244 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT +NNVE+ A + I+ +G+SW+ FG E + GTK+F++ G V VE M + + Sbjct: 245 KPTVINNVETFANIAQIINKGSSWFRSFGTEKSPGTKVFALVGKVKESGLVEVEMGTSIN 304 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 +++ GI+ AV GG S C+P ++ D++ LKE+GS +G+ ++VM Sbjct: 305 KIVYDIGLGIQND-KKAKAVQTGGPSGGCIPT-KLFDTACDFESLKEIGSIMGSGGMVVM 362 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D ++ F ESCG+CTPCR G + +++ L KG A + ++ L E+SK Sbjct: 363 DEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDLTKGKANEETLEKLEELSK 422 Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + ++C LG ++ PI + F+ + + + C Sbjct: 423 IVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVGENKTC 461 >gi|53804300|ref|YP_113850.1| formate dehydrogenase subunit beta [Methylococcus capsulatus str. Bath] gi|53758061|gb|AAU92352.1| formate dehydrogenase, beta subunit [Methylococcus capsulatus str. Bath] Length = 516 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 224/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGKS-LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ L D ++ G + + L I+ EV ASGLRGRGGA F Sbjct: 98 LKNQERLTFARVGITDPVCLEDYLAHGGYRGLRNALAMEPAAIVEEVTASGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + + Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 PTGIKWKTVLNAPAGQ-KYVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGLAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +L A++ +G LG + G + V GAGAY+CGEETALL Sbjct: 217 GYIYLRIEYPHAGVALNQAIEAAIQAGYLGDDILGSGKRFQLEVRLGAGAYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL +G +Y+ +G +RGT Sbjct: 277 ESLEGKRGMVRFKPPLPAIEGLFGQPTVINNVISLASVPIILDKGGKYYADYGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V P +E++ +T EL+ + GG G + AV GG +P Q Sbjct: 337 LPLQLAGNVKRPGLIEKAFGMTLRELLYDYGGGSASGRP-IRAVQVGGPLGSYMPESQFD 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + LG V+V D + D+ K F ESCG+CTPCR G+ + Sbjct: 396 -TPLDYESFSAIWAVLGHGGVVVFDDTVDMAKMARYAMEFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R++ + + + LL ++ + ++CALG +P+ + +F Sbjct: 455 EVIDRIIDDRDRAKNLALLRDLGDTMLAGSLCALGGMTPYPVLSALNHF 503 >gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 625 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 150/419 (35%), Positives = 237/419 (56%), Gaps = 6/419 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 + Q RI N +SL++ ++ G + ++K + E D +I++V SG+RGRGG Sbjct: 139 FIAKQTRIVLKNCGKFDAESLNEYIASGGFQALEKAMFEMDPDLVIDQVDKSGIRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + + +D HY+V N DE +PG D +M +P+ LIEG ++A++A+ A Sbjct: 199 GFPAGKKWIQVARQ-ADPVHYVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMMLAAYAVRA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ GLLG + G+ + ++ GAGA++CGE +A Sbjct: 258 QHGYIYVRAEYPQSVARLKHAIAVLEEVGLLGDDILGTGFSFHMHINRGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ A +P I+ +GA WY G E + Sbjct: 318 LTASIEGNRGMPRVKPPRTVEQGLWAKPTVLNNVETYANIPEIILKGADWYRSIGTEGSP 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M T E+I GG++ G AV GG S CL Sbjct: 378 GTKTFSLTGSIENTGLIEVPMGTTLREIIFDIGGGLKSGA-AFKAVQIGGPSGGCLTEEH 436 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D +K+ G+ +G+ ++VMD T +++ F + ESCG+C PCR GT Sbjct: 437 LD-VPLDFDSVKKYGAIVGSGGLVVMDEHTCMVEVARFFMGFTQRESCGKCGPCRIGTKR 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+V G + ++D L + I+ R++C LG +A P+ ++NFR E I Sbjct: 496 MLEILERIVDGKGEVEDLDKLEHLGNFIKDRSLCGLGKSAPLPVLSTLRNFRDEYVEHI 554 >gi|289612446|emb|CBI60107.1| unnamed protein product [Sordaria macrospora] Length = 175 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 121/161 (75%), Positives = 136/161 (84%) Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 MSI F ELIEKHCGG+RGGWDNLL VIPGGSSVP + A + A MD+DGLK +GSGLGT Sbjct: 1 MSIPFRELIEKHCGGVRGGWDNLLCVIPGGSSVPLVKAEHIIDAPMDFDGLKAVGSGLGT 60 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM RVMERL G A EID+ Sbjct: 61 AAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGTGWMWRVMERLRTGDADISEIDM 120 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L +V+K +EG TICALGDAAAWPIQGLIKNFRP IE RI++ Sbjct: 121 LQQVTKQVEGHTICALGDAAAWPIQGLIKNFRPEIERRINE 161 >gi|253998889|ref|YP_003050952.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4] gi|253985568|gb|ACT50425.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4] Length = 516 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 222/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL+D ++ + + L I+ +V SGLRGRGGA F Sbjct: 98 LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D+ Y+V NADE + GT DR IM +P LIEG IA+ A+GA Sbjct: 158 PTGIKWKTVHDCKADQ-KYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L A+ LG N G+ ++ V AGAY+CGEET+LL Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S A VP IL +G ++Y +G +RGT Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T +L+ GG G + AV GG LP Q Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQFD 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + LG ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 396 -TPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 VM+++++G + I L+ ++S + ++CALG +P+ I +F Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHF 503 >gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] Length = 627 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 18/380 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 +++ VK SGLRGRGGAGFSTG KW F PH Y+V NADE EPGT KDR ++ Sbjct: 212 VLDSVKESGLRGRGGAGFSTGQKWDFCRAAVGTGPHAAHYVVCNADEGEPGTFKDRVLLA 271 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGY 157 + EG ++ + IGA +Y+RGE+ E L A +++ A+ LLG + + G+ Sbjct: 272 SYAGLVFEGMTVSGYVIGARKGIVYLRGEYRYLLEPLNAVLEKRRAAKLLGKSILGRTGF 331 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D DI VH GAGAY+CGEETALLESLEGK+G PR +PPFP G G PT VNNVE++A Sbjct: 332 DFDIEVHLGAGAYVCGEETALLESLEGKRGVPRKRPPFPVTAGYLGQPTAVNNVETLASA 391 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I +GA+WY G + GTK+ SISG P E + +++ C G Sbjct: 392 ALIAAKGAAWYKSIGTPKSAGTKILSISGDCERPGIYEYPYGVKVSQVLAD-C----GAR 446 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 D I G S + C+ + G + ++ + GS ++ D + D+ + + Sbjct: 447 DTQACQIAGASGL-CVAPNEF-GRRIAFEDIPTGGS------FMIFDNTRDMFQVARNFA 498 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F+ HESCG CTPCR GT + M+++ +G + +I+ ++ V + ++ + C LG A Sbjct: 499 HFFVHESCGFCTPCRVGTTLLANAMDKIDEGHGGEYDINDIWRVIRTLKTASHCGLGQTA 558 Query: 398 AWPIQGLIKNFRPLIEERID 417 + ++ FRP E R++ Sbjct: 559 GNAVADTLQKFRPSYELRLN 578 >gi|313200988|ref|YP_004039646.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688] gi|312440304|gb|ADQ84410.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688] Length = 516 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 222/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL+D ++ + + L I+ +V SGLRGRGGA F Sbjct: 98 LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D+ Y+V NADE + GT DR IM +P LIEG IA+ A+GA Sbjct: 158 PTGIKWKTVHDCKADQ-KYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L A+ LG N G+ ++ V AGAY+CGEET+LL Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S A VP IL +G ++Y +G +RGT Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T +L+ GG G + AV GG LP Q Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQFD 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + LG ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 396 -TPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 VM+++++G + I L+ ++S + ++CALG +P+ I +F Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHF 503 >gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 580 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 143/366 (39%), Positives = 207/366 (56%), Gaps = 16/366 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I ++ SGLRG GGAGF TG KW + P + VN DE EPGT KDR + +P Sbjct: 216 VICTMEDSGLRGLGGAGFPTGRKWRIVSG--EPAPRLMAVNIDEGEPGTFKDRVYLERDP 273 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +EG +IA+ +IY+R E+ R L A+ E + + + I Sbjct: 274 HRFLEGMLIAAAVTQVAAIYIYLRDEYAGCRAILTQALQELHDDPPVPDLPR------IE 327 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT +N E++ V IL Sbjct: 328 LRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYWVRDILE 387 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 +GA W++ GR +G + FS+SG V P IT ELI+++CGG+ G A Sbjct: 388 KGAEWFASQGRHGRKGLRSFSVSGRVRQPGVHLAPAGITVRELIDEYCGGMIDG-HTFYA 446 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 +PGG+S LPA M +D+D L+ G +G+AA+IV+ + A L F+KH Sbjct: 447 YLPGGASGGILPA-SMGNIPLDFDTLQPHGCFIGSAAIIVLSDHDSAVAAARNLMHFFKH 505 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCGQCTPCR GT + ++ + + ++ L ++S + +IC LG AA P+ Sbjct: 506 ESCGQCTPCRVGTAKALDLIRQ------PQWDLPALEDLSAVMRDASICGLGQAAPNPVD 559 Query: 403 GLIKNF 408 +I+ F Sbjct: 560 CVIRYF 565 >gi|330720274|gb|EGG98633.1| NAD-dependent formate dehydrogenase beta subunit [gamma proteobacterium IMCC2047] Length = 526 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 146/394 (37%), Positives = 218/394 (55%), Gaps = 6/394 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--VCSDR 76 S+ G + ++K L + I++ VK SGLRGRGGA F G+KW + + + Sbjct: 126 SIEAYQQHGGFVGLEKALAQSGQAIVDAVKESGLRGRGGAAFPAGIKWQTVHDCGLEEES 185 Query: 77 PH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P Y+V NADE + GT DR +M +P LIEG IA A+GA +IY+R E+ ++ Sbjct: 186 PQKYIVCNADEGDSGTFADRMVMEGDPLMLIEGMTIAGLAVGAEQGYIYLRSEYPVAQQI 245 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L A+ Y SG LG+N G + + V GA AYICGEET+LLESLEGK+G R KPP Sbjct: 246 LNEAMANAYESGFLGNNIQDSGRNFHLEVRMGAAAYICGEETSLLESLEGKRGMVRFKPP 305 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 PA GL+G PT VNNV ++A VP IL GA Y+ +G +RGT F ++G++ + Sbjct: 306 LPAIEGLFGKPTVVNNVLTLAAVPFILAEGAKAYADYGMGRSRGTLPFQLAGNIQQGGLI 365 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + T EL+++ GG G + A+ GG LP Q G +DY+ + + Sbjct: 366 ELAFGTTLRELLDEFGGGTASG-KPMRAIQVGGPLGAYLPESQW-GTELDYEAFAAIDAV 423 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG ++V D S D+ + F ESCG+CTPCR G+ + V++++ +G + Sbjct: 424 LGHGGIVVFDDSVDMAEQARFSMEFCVAESCGKCTPCRVGSTRGVEVIDKIRQGENRVEN 483 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + + ++CA+G +P+ + +F Sbjct: 484 HILLKDLCETMLHGSLCAMGGMTPFPVMSAVNHF 517 >gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 608 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 144/388 (37%), Positives = 209/388 (53%), Gaps = 22/388 (5%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRP--HYLVVNADESEPGTC 92 + +G + ++ E+K S LRGRGGAGF+T +KW S C P Y+V NADE EPGT Sbjct: 194 IARGPEAMLAEMKVSNLRGRGGAGFTTYIKWESARRATCRHAPPARYVVCNADEGEPGTF 253 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS- 151 KDR ++ + +G +A IGA +Y+RGE+ +LQ ++ +GLLG Sbjct: 254 KDRVLLTSHADLVFDGMSVAGVTIGAEKGLLYLRGEYAYLLPALQENLERRRRNGLLGPA 313 Query: 152 ---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 + L +D+DI H GAGAY+CGEETALLESLEGK+G PR++PPFP + G G PT V Sbjct: 314 LCGRADLAFDIDI--HLGAGAYVCGEETALLESLEGKRGVPRIRPPFPVHAGYRGQPTVV 371 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 NNVE++ I RG +W++G G + + GTKL SISG V P E + +++ Sbjct: 372 NNVETLCKAALIAVRGGAWFAGLGTKQSTGTKLLSISGDVESPGIYEYPFGVAVSQVLND 431 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 CG N AV G S CL + I ++ + G A +V D Sbjct: 432 -CGA-----GNAQAVQVSGPSGSCLAMHEFSRRIA-FEDVPTAG------AFMVFGAHRD 478 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + + + F+ HESCG CTPCR GT + M+++ G + +I ++++ + + Sbjct: 479 MFEVARNFAHFFAHESCGFCTPCRVGTSLVANCMDKIANGRGSQYDISEIFKIHRLLHAA 538 Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERI 416 + C LG A P+ + FRP E R+ Sbjct: 539 SHCGLGQTACNPLFDTLNKFRPAYERRL 566 >gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] Length = 635 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 150/386 (38%), Positives = 229/386 (59%), Gaps = 8/386 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 +G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 176 KGYFALADCLLNKQPLDVIDIIKRSGLRGRGGGGFPTGLKWEFAHKQKSDI-KYVVCNAD 234 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++I + +Y+R E+ L+ A+++ Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSISSSKGLVYIRAEYPLAINRLRIAINQARQ 294 Query: 146 SGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG + DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 295 YGLLGDHI-LGTEFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 354 KPTNVNNVETLANIPIILTKGAEWFAAIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAAGSMMGSGGMIVM 471 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 472 DED-DCMVSVSRFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRGTEKDLDTLATLG 530 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 + I+ +C LG + P+ + NF Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556 >gi|294810790|ref|ZP_06769436.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b] gi|294441978|gb|EFG10799.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b] Length = 577 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 150/379 (39%), Positives = 226/379 (59%), Gaps = 8/379 (2%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G++ D +L K +I+ +K SGLRGRGG GF TG+KW F K SD Y+V NAD Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR IM +PH+++E + ++IG+ +Y+R E+ L+ A+++ Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294 Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG + LG D DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT VNNVE++A +P IL +GA W++ G E ++GTK+F+++G +N +E M T Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E+I + GG G AV GG S CL + I D+D L GS +G+ +IVM Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471 Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++D L + Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530 Query: 383 KNIEGRTICALGDAAAWPI 401 + I+ +C LG + P+ Sbjct: 531 QVIKDTALCGLGQTSPNPV 549 >gi|332285353|ref|YP_004417264.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp. T7-7] gi|330429306|gb|AEC20640.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp. T7-7] Length = 523 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 151/409 (36%), Positives = 228/409 (55%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ S+SD + + ++K L I+++V SGLRGRGGA F Sbjct: 101 LKRQERLTFARVGITDPLSISDYQAHEGFKGLEKALSLPPAAIVDQVTESGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +++ Y+V NADE + GT DR +M +P+ LIEG IA A+ A Sbjct: 161 PTGIKWKTVLATEAEQ-KYIVCNADEGDSGTFSDRMLMEGDPYALIEGMAIAGLAVQATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG+N + G+ D+ V AGAYICGEET+LL Sbjct: 220 GYIYVRSEYPYAITALEAAIVRAREAGWLGANIRNSGHAFDLEVRTAAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA++Y +G + GT Sbjct: 280 ESLEGKRGLVRAKPPLPAIKGLFGKPTVINNVISLASVPIILARGAAFYRDYGMGRSTGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ +T EL+ + GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLTLRELLYEFGGGSASG-KPLRAVQVGGPLGAYLPESQWD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 I DY+ + + +G ++ D + D+ F ESCG+CTPCR G Sbjct: 399 VPI-DYEAYAAIKAMVGHGGLVAFDDTADMSSLAEYAMEFCAIESCGKCTPCRIGAVRGA 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V+ ++ + ++ ++ LL+E+ + ++CALG +P+ +++F Sbjct: 458 EVISKIRRNEQREAQVVLLHELCDTMLAGSLCALGGMTPYPVLSALEHF 506 >gi|325274757|ref|ZP_08140793.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51] gi|324100101|gb|EGB97911.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51] Length = 519 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 153/410 (37%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 T Q +F + SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 159 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + + + Y+V NADE + GT DR +M +P LIEG +IA A+GA + Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADMGY 218 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L+ A A+G LG+N + G ++ V GAGAYICGEETALLES Sbjct: 219 IYVRSEYPDAIRVLEQAFAIARAAGYLGANVAGSGRAFELQVRVGAGAYICGEETALLES 278 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G+V + VE + +T EL+E + GG G L A GG +P Sbjct: 339 FQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASG-RPLKAAQVGGPLGAWVPPSHFD-T 396 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ MG+ LG V+V D + ++ F ESCG+CTPCR G+ M V Sbjct: 397 PLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456 Query: 362 MERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 457 VDRLIASSETGERHDHALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYF 506 >gi|241206610|ref|YP_002977706.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860500|gb|ACS58167.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 518 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 148/402 (36%), Positives = 217/402 (53%), Gaps = 10/402 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + I+ E+ SGLRGRGGAGF TG+KW + + +R Sbjct: 117 SLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAGFPTGIKWKTVLEAAGER-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG I+ A GA F+Y R E+ + Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFVYTRSEYPHAIAVMTE 235 Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV +G+LG S G+ DI V GAGAY+CGEETALL SLEGK+G R KPP PA Sbjct: 236 AVGIAREAGILGPSVLGSGHTFDIEVRAGAGAYVCGEETALLNSLEGKRGIVRAKPPLPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+ CPT +NNV S+A VP I+ +GA++Y FG +RGT I+G+V Y E + Sbjct: 296 HKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLFETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ +++++ GG G + AV GG P + DY+ +G Sbjct: 356 FGLSLGDIVDRIGGGTVTGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYESFAAKDGLIGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D++K F ESCG+CTPCR G+ + +++ GI ++ L Sbjct: 414 AGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRAL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF------RPLIE 413 L ++ ++ ++CALG +P+ + +F PL+E Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDFSPAPLVE 515 >gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 569 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 214/392 (54%), Gaps = 25/392 (6%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G +L S++ G D ++ ++ SGLRG GGAGF TG KW + Sbjct: 198 GYALLKSLASGDLDPA---------AVLCTMEDSGLRGLGGAGFPTGRKWRIVQN--EPA 246 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + +N DE EPGT KDR + +PH +EG +IA+ + +IY+R E+ RE L Sbjct: 247 PRLMAINIDEGEPGTFKDRVYLERDPHRFLEGMLIAATVVNVSAIYIYLRDEYAGCRELL 306 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + L + + I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ Sbjct: 307 AEELQR------LQQDPPIPGLPTIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 360 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +N E++ V I+ +GA W++ GR +G + FS+SG V P Sbjct: 361 AQVGLFGRPTLEHNFETLYWVRDIIEKGAEWFASQGRNGRKGLRSFSVSGRVKRPGVHLA 420 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT ELI+++CGG+ G +PGG+S LPA M +D+D L+ G +G Sbjct: 421 PAGITVRELIDEYCGGMLDG-HAFYGYLPGGASGGILPA-SMGNIPLDFDTLQPYGCFIG 478 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+++ +A L F+KHESCGQCTPCR GT + ++ + K ++ Sbjct: 479 SAAVVILSDQDSATQAARNLMHFFKHESCGQCTPCRTGTAKTLDLIRQ------PKWDLP 532 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++S + +IC LG AA P+ +IK F Sbjct: 533 ALDDLSAVMRDASICGLGQAAPNPVDCVIKYF 564 >gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1] Length = 632 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 151/395 (38%), Positives = 226/395 (57%), Gaps = 9/395 (2%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + R ++ + K+L E + +I + SGLRGRGG GF TGMKW + D Sbjct: 157 IDEYIGRHGYEALGKVLTEMTPEDVIQTILDSGLRGRGGGGFPTGMKWKLARNIVPDADQ 216 Query: 79 -YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE +PG DR ++ +PH ++E IA +AIGA +IYVR E+ E L Sbjct: 217 KYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMSIAGYAIGATQGYIYVRAEYPIAVERLN 276 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+ + +G+LG N + +D+D+ GAGA++CGEETAL+ S+EG +G+PR +PP Sbjct: 277 IAIKQAREAGMLGKNIFGTDFCFDIDL--RLGAGAFVCGEETALMTSIEGNRGEPRPRPP 334 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GL+ PT +NNVE+ A +P I+ GA W++ G E ++GTK+F++ G + V Sbjct: 335 FPAEKGLFQKPTILNNVETYANIPQIILNGAEWFASMGTEKSKGTKVFALGGKIKNTGLV 394 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T E+IE+ GGI G A GG S C+ A I DYD L +GS Sbjct: 395 EVPMGTTLREVIEEIGGGIPNG-KKFKAAQTGGPSGGCIDASNFDIPI-DYDNLIGIGSM 452 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +IVMD ++ F ESCG+CTPCR GT M +++++ KG + Sbjct: 453 MGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKRMWEILDKITKGKGTLED 512 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +D L E++ +I+ ++C LG A P+ ++ FR Sbjct: 513 LDKLEELAYHIKANSLCGLGQTAPNPVLSTLRCFR 547 >gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas sp. 3As] Length = 597 Score = 248 bits (634), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 217/375 (57%), Gaps = 23/375 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ + +I + SGLRG GGAGF G KW + + P + VN DE EPGT KDR Sbjct: 238 QRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--PRLMAVNIDEGEPGTFKDRT 295 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +PH +EG +IA+ +G ++Y+R E+ R L+ + A L Sbjct: 296 YLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLEREIARLQAD----PPCALP 351 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A +GL+G PT +N E++ Sbjct: 352 H---IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAEIGLFGRPTLEHNFETLYW 408 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V I+ RGA+W+S FG +G + FS+SG V P IT EL++ +CGG+ G Sbjct: 409 VRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAPAGITLKELVDTYCGGMLDG 468 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAI 333 L A +PGG+S LPA ++ +D+D L+ G +G+AA+IV+ DR+ D + Sbjct: 469 -HTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGSAAIIVLSDQDRARDAALNV 526 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 R F++HESCGQCTPCR GTG ++M+ A + + L ++++ + +IC L Sbjct: 527 MR---FFEHESCGQCTPCRVGTGKAAQLMQ------APQWDHATLEDLNQVMSDASICGL 577 Query: 394 GDAAAWPIQGLIKNF 408 G AA P++ + F Sbjct: 578 GQAAPNPVRCVQTYF 592 >gi|307730640|ref|YP_003907864.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003] gi|307585175|gb|ADN58573.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003] Length = 521 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 219/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L+ D + SGLRGRGGA F G+KW + + Sbjct: 116 SIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RAAKAPQK 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA GA +IYVR E+ +L+A Sbjct: 175 YVVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATAGYIYVRSEYPHSMATLEA 234 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + A+G LG +S LG + ++ V GAG+Y+CGEETALLESLEGK+G R KPP P Sbjct: 235 AIAKARAAGWLG-DSVLGSAHRFELFVAKGAGSYVCGEETALLESLEGKRGIVRAKPPVP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGLYG PT +NNV ++A VP I RGA++Y FG +RGT F ++G+V VE Sbjct: 294 ALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ + GG G AV GG LP Q MDY+ +G+ +G Sbjct: 354 AFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 ++V D ++++ F ESCG+CTPCR G+ + V+ R+ G R++ Sbjct: 412 HGGLVVHDDTSNLADLAQYAMHFCALESCGKCTPCRIGSTRGVEVIARIRNGDTSTRQVQ 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPYPVLSALDHF 503 >gi|170693702|ref|ZP_02884860.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M] gi|170141484|gb|EDT09654.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M] Length = 521 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S D ++ G + + L+ D + SGLRGRGGA F G+KW + + Sbjct: 116 STDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RAAKAAQK 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA GA +IYVR E+ +L+A Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATAGYIYVRSEYPHSIATLEA 234 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + A+G LG +S LG + ++ V GAG+Y+CGEETALLESLEGK+G R KPP P Sbjct: 235 AIAKARAAGWLG-DSVLGSAHRFELFVAKGAGSYVCGEETALLESLEGKRGIVRAKPPVP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGLYG PT +NNV ++A VP I RGA++Y FG +RGT F ++G+V VE Sbjct: 294 ALVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T ELI + GG G AV GG LP Q MDY+ +G+ +G Sbjct: 354 AFGVTLRELIYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 ++V D ++++ + F ESCG+CTPCR G+ + V+ R+ G R++ Sbjct: 412 HGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGVEVIARIRNGDTSTRQVQ 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPYPVMSALDHF 503 >gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 595 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/367 (40%), Positives = 215/367 (58%), Gaps = 4/367 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+E+K SGLRGRGG GF TG+KW F +D+ Y+V NADE +PG DR I+ +P Sbjct: 154 VIDEMKLSGLRGRGGGGFPTGLKWQFAANNSADQ-KYVVCNADEGDPGAFMDRSILEGDP 212 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H++IE I ++ GA +Y+R E+ L+ A+D+ GLLG N G+D DI Sbjct: 213 HSVIEAMAICGYSTGASKGLVYIRAEYPLAINRLKKAMDDAREYGLLGKNILGSGFDFDI 272 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + +GAGA++CGEETAL+ S+EG++G+P KPPFPA G +G PT VNNVE+ A +P I+ Sbjct: 273 EIKYGAGAFVCGEETALIHSMEGERGEPTSKPPFPAESGYWGKPTNVNNVETFANIPEII 332 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G W+ G E + GTK+F+++G +N VE M T E+I + GGI G Sbjct: 333 LNGGEWFKSIGTEKSSGTKVFALAGKINNVGLVEVPMGTTLREVIFEIGGGISNG-KKFK 391 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S CL + I D+D L GS +G+ +IVMD ++ F Sbjct: 392 AVQTGGPSGGCLTERDLDTPI-DFDSLLAKGSMMGSGGMIVMDEDNCMVAVSKFYLEFTV 450 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+CTPCR G + +++++ KG +++LL E+S+ I+ ++C LG A PI Sbjct: 451 EESCGKCTPCRIGNTRLYEILDKITKGNGTLEDLELLKELSETIKDTSLCGLGQTAPNPI 510 Query: 402 QGLIKNF 408 + F Sbjct: 511 LSTLDQF 517 >gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] Length = 626 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/380 (37%), Positives = 218/380 (57%), Gaps = 33/380 (8%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ + +I + SGLRG GGAGF G KW + + P + VN DE EPGT KDR Sbjct: 238 QRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--PRLMAVNIDEGEPGTFKDRT 295 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +PH +EG +IA+ +G ++Y+R E+ R L+ + ++L Sbjct: 296 YLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLEREI------------ARLQ 343 Query: 157 YDVDIIVHH-----GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 D + H GAGAYICGEE+A++ES+EGK+G+PR++PP+ A +GL+G PT +N Sbjct: 344 ADPPCALPHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAEIGLFGRPTLEHNF 403 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++ V I+ RGA+W+S FG +G + FS+SG V P IT EL++ +CG Sbjct: 404 ETLYWVRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAPAGITLKELVDTYCG 463 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTD 328 G+ G L A +PGG+S LPA ++ +D+D L+ G +G+AA+IV+ DR+ D Sbjct: 464 GMLDG-HTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGSAAIIVLSDQDRARD 521 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + R F++HESCGQCTPCR GTG ++M+ A + + L ++++ + Sbjct: 522 AALNVMR---FFEHESCGQCTPCRVGTGKAAQLMQ------APQWDHATLEDLNQVMSDA 572 Query: 389 TICALGDAAAWPIQGLIKNF 408 +IC LG AA P++ + F Sbjct: 573 SICGLGQAAPNPVRCVQTYF 592 >gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 623 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 134/351 (38%), Positives = 204/351 (58%), Gaps = 4/351 (1%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + TG KWS + SD Y++ N DE +PG DR +M +PH +IEG IA++ GA Sbjct: 198 YPTGKKWSQVLSYASDM-KYVICNGDEGDPGAFMDRSLMEGDPHNIIEGMAIAAYGTGAS 256 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ L A+++ GLLG N G + D+ V+ GAGA++CGE +AL Sbjct: 257 EGYIYVRAEYPLAVARLNKAIEQAREIGLLGKNILGTGLNFDVHVNQGAGAFVCGEGSAL 316 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++G PR+K GL+ PT +NNVE+ A V I+ GA+WY +G + + G Sbjct: 317 IASIEGERGMPRVKAKRTVEEGLWKKPTVLNNVETFANVRHIIMNGAAWYQSYGTKGSAG 376 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK F+++G+VN +E M T ++I + GGIRG AV GG S CL + Sbjct: 377 TKAFALTGNVNNTGLIEVPMGTTLRKIIFEIGGGIRGN-KKFKAVQIGGPSGGCLTEEHL 435 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A +D+D L + G+ +G+ +++MD T +++ F ++ESCG+C PCREGT M Sbjct: 436 DMA-LDFDSLIDAGAMIGSGGMVIMDEDTCMVEVAKFFMNFTQNESCGKCVPCREGTKIM 494 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++E++V G +++LL E+S I +C LG AA P+ +K FR Sbjct: 495 LNILEKIVSGKGSMEDLNLLEELSDTITNTALCGLGKTAANPVVSSLKYFR 545 >gi|189308114|gb|ACD86941.1| mitochondrial NADH dehydrogenase [Caenorhabditis brenneri] Length = 190 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 112/177 (63%), Positives = 140/177 (79%) Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P +MD Sbjct: 1 SGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDTVLMD 60 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ ++M R Sbjct: 61 FDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNKMMWR 120 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H+ Sbjct: 121 FVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFHK 177 >gi|192293100|ref|YP_001993705.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] gi|192286849|gb|ACF03230.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] Length = 428 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/356 (41%), Positives = 207/356 (58%), Gaps = 11/356 (3%) Query: 60 FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 F T KW FM + S+R YL VN DE+EPG+ KDR +M PH LIEG IA++A Sbjct: 60 FPTANKWRFM-RTGSERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118 Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174 IGA I VR E+ +L A+ E A+GLLG + G+D+ + VH AG YI GE Sbjct: 119 IGATEVIILVRDEYRAAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGE 178 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETAL+ ++EG++ PR +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY Sbjct: 179 ETALIAAIEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFT 238 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 + GTKL+ ISG V P +E + T EL+ + GGIR G LLA PGG + Sbjct: 239 DEGGTKLYGISGCVERPQLIEAPIGSTARELLHR-AGGIRNG-RGLLAFQPGGGATAFFE 296 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 ++ +D+ K+ GS LGT A+IV+D + AI R FY ESCG CTPCR+G Sbjct: 297 KAEL-DVPLDFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408 W+ ++++ L G + +I++L++ GR+ C L A P++ ++ F Sbjct: 356 LPWVSKLLDALEAGKGTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411 >gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] Length = 568 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 223/393 (56%), Gaps = 21/393 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++ SD ++ G ++ + + E G DW + +V ASGLRG GGAGF +G KW F+ + Sbjct: 191 ETFSDYVAEGGYETLKTLRETG-DWEKVQEDVLASGLRGLGGAGFPSGKKWGFV--RANP 247 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E Sbjct: 248 GPRYLAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETAFIYMRDEYPAVLEI 307 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L + +G++ GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF Sbjct: 308 LAREIKALEEAGIVTP----GY---IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPPF 360 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VG++G PT V+NVE++ V I R G S + +G + +S+SG V P Sbjct: 361 VAQVGVFGQPTLVHNVETLHWVTRICREGPEVLSATEKNGRKGLRSYSVSGRVAQPGVYL 420 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ++IE GG+ G A PGG S LPA + +D+D L+ +GS + Sbjct: 421 LPAGSTITDIIEA-AGGMADG-HLFKAYQPGGPSSGILPA-SISDVPLDFDTLQPLGSFI 477 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V+ A + F++ ESCGQCTPCR G +++M+ A + + Sbjct: 478 GSAAVVVLSDKDSARAAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADQWDT 531 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL E+S + +IC LG AA PI+ ++K+F Sbjct: 532 GLLEELSTAMVDASICGLGQAAPNPIRMVMKHF 564 >gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit [uncultured archaeon GZfos26D6] Length = 654 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 151/417 (36%), Positives = 246/417 (58%), Gaps = 6/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F+ + +++D ++ G + + K+L + ++ EVK++ LRGRGG GF G KW Sbjct: 139 VFSGNLWVDPANINDYIALGGYQALAKVLHGMTPEEVLEEVKSANLRGRGGGGFPAGRKW 198 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + +P Y++VN DE +PG DR IM PH ++EG +IA++AIG+ F+YVR Sbjct: 199 EST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIGSQQGFVYVR 257 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ ++L A+++ G LG + G++ D+ VH GAGA++ GE +AL+ ++EGK Sbjct: 258 QEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESSALMNAIEGK 317 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR K ++ G++G P+ +NNVE+ A+VP I+++GA W++ G E ++GTK+FS+ Sbjct: 318 VGEPRPKYIHTSDSGVWGKPSNLNNVETYAIVPLIIKKGADWFNSIGTEGSKGTKIFSLV 377 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN VE M T ++I K GG G AV GG S +P + + D+ Sbjct: 378 GKVNNTGLVEVPMGTTLRDIIYKI-GGGIPGGKRFKAVQTGGPSGGVIPERYLDSPV-DF 435 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L ++GS +G+ +IVMD T I+ F +ESCG+C PCREG M +++ + Sbjct: 436 DELTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLKRMREILDDI 495 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 V G ++ +I+LL+E++ ++ ++CALG AA P+ I+ F E I + RC Sbjct: 496 VAGKGREGDIELLHEIADVMKSASLCALGTTAANPVLSTIRYFGDEYEAHIKE-RRC 551 >gi|317052150|ref|YP_004113266.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5] gi|316947234|gb|ADU66710.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5] Length = 572 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/363 (37%), Positives = 206/363 (56%), Gaps = 6/363 (1%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + TG+KW + K +R ++V N DE +PG DR +M +PH L+EG IA +A GA Sbjct: 180 YPTGVKWQLVRKAPGER-KFVVANGDEGDPGAYMDRTLMESDPHRLLEGMAIAGYASGAQ 238 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177 ++YVRGE+ E L+ A+ + +G+LG N LG + + V GAGA++CGEETA Sbjct: 239 HGYLYVRGEYPVAAERLRKAIKDAQKAGILG-NQVLGSRFSFTLEVRIGAGAFVCGEETA 297 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ GK+GQP +PP+PA GL+GCPT +NNVE+ V I+R G ++ G +R Sbjct: 298 LMASITGKRGQPVPRPPYPAQRGLWGCPTLINNVETFGSVANIVRDGWEAFAAIGTPKSR 357 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V +E M I+ E++ GG+ G A GG S C+P Q Sbjct: 358 GTKIFALCGEVENTGLIEVPMGISLREVVFDIGGGL-GEGKTFKAAQTGGPSGGCIPI-Q 415 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 MDY+ L+E+GS +G+ +IVM ++T ++ F ESCG+CTPCR GT Sbjct: 416 HLDTPMDYESLQELGSIMGSGGLIVMGQNTCMVDVAKFFMEFSLDESCGKCTPCRAGTAQ 475 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R++ + G A ++D L + + ++C LG A P+ G ++ FR I+ Sbjct: 476 LYRLLTNIGNGSATIEDMDHLENLCAMVRDTSLCGLGITAPNPVLGTLQYFRDEYLAHIE 535 Query: 418 QYH 420 + H Sbjct: 536 KRH 538 >gi|209519328|ref|ZP_03268127.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] gi|209500212|gb|EEA00269.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] Length = 524 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/409 (35%), Positives = 219/409 (53%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTV-RGAKAAQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG S G ++ V GAG+Y+CGEETA+L Sbjct: 217 GYIYVRSEYPHSIATLEAAIARARKAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GLYG PT +NN ++A VP I RGA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPVPALAGLYGQPTVINNAITLATVPIIFARGAAFYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL++ GG G AV GG LP Q Sbjct: 337 LPFQLAGNIKRGGLVELAFGVTLRELLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQWD 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 -IPMDYEAYAAVGAVIGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVAGSLCAMGGMTPYPVLSALDHF 503 >gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 618 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/387 (40%), Positives = 220/387 (56%), Gaps = 4/387 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 +LE +I EVK SGLRGRGG GF TG KW V D Y++ NADE +PG D Sbjct: 167 LLEMTPAQVIEEVKRSGLRGRGGGGFPTGRKWELAAAVEGDV-KYVLCNADEGDPGAFMD 225 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS- 153 R I+ +PH ++E IA +AIGA +IYVR E+ L+ A+ + GLLG N Sbjct: 226 RSIIEGDPHAILEAMAIAGYAIGAQHGYIYVRAEYPVAVHRLEIAIRQARELGLLGENIL 285 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+ DI + GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+G PT NNVE+ Sbjct: 286 GTGFSFDIDIRLGAGAFVCGEETALIASIEGQRGLPRPRPPFPAQKGLWGKPTLNNNVET 345 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A VP I+ GA + G E + GTK+F+++G+V VE + T E++ GGI Sbjct: 346 YANVPYIILHGAEAFRSVGTEKSPGTKVFAVAGNVMNTGLVEVPIGTTLREIVYGMAGGI 405 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G A GG S C+PA + MDY+ L E+GS +G+ +IVMD + ++ Sbjct: 406 PKGRP-FKAAQTGGPSGGCIPA-HLLDIPMDYEPLNEVGSMMGSGGLIVMDDQSCMVDVA 463 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F + ESCG+C PCR GT M+ +++R+V+G ++D L ++ I+ +C L Sbjct: 464 RFYLQFTQDESCGKCPPCRIGTKRMLEILDRIVEGEGTMEDLDELERLANGIKATALCGL 523 Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQYH 420 G A P+ ++ FR E + H Sbjct: 524 GQTAPNPVLSTLRYFREEYEAHVRDKH 550 >gi|116749388|ref|YP_846075.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116698452|gb|ABK17640.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 421 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 216/368 (58%), Gaps = 8/368 (2%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F KW +P + P YLV N+DE EPGT KDR ++ +PHT+IEG ++A +AIGA Sbjct: 59 FPASKKWESVPADGA-YPRYLVANSDEMEPGTFKDRVLIHADPHTIIEGMILAGYAIGAS 117 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177 AF++VR + ++ + +G LG N LG Y +DI+VH G YICGE +A Sbjct: 118 KAFLFVRPSYESSAAIMERELRIAREAGYLGRNI-LGTDYSLDIVVHRSGGRYICGEASA 176 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL ++ GK+ P+ PP+P GL+ PT VNNVE++A VP ILR G W+ G R Sbjct: 177 LLNAVMGKRPNPQRPPPYPTVKGLWERPTVVNNVETLANVPHILRNGPEWFRGLSRSKTP 236 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISG V+ P VE M +E+IE+H GG+ G A +PGG+S L Sbjct: 237 GTKLFCISGKVSRPGCVELPMGTRLNEIIEEHAGGMAPG-SEFKACLPGGASTYFLTRDN 295 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A MD+DG+ + + LGT AVIV DR T ++ A L F+ ESCG CTPCREG + Sbjct: 296 LH-AGMDFDGMAAVKNRLGTGAVIVFDRKTCLVGATLNLMRFFARESCGWCTPCREGLPY 354 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ER+ +G ++ I +L +S+ + + CAL AA P++ L+ +F + E I Sbjct: 355 MRDLLERIEEGEGREEYIPMLRLMSRQVWN-SYCALAPGAASPVESLLDHFADEVHEHIS 413 Query: 418 QYHRCNFQ 425 Q RC F+ Sbjct: 414 Q-KRCPFK 420 >gi|253997399|ref|YP_003049463.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8] gi|253984078|gb|ACT48936.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8] Length = 517 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 219/409 (53%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SL D ++ + + L+ I+ V SGLRGRGGA F Sbjct: 99 LKKQQRLTFARVGVINPVSLDDYIAHDGYQGLKNALKLSGADIVKAVTDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+ + C Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 159 PTGIKWNTVLG-CESEQKYVVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAGVAVGATQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +L A++ +G LG N G + V AGAY+CGEET+LL Sbjct: 218 GYIYLRSEYPHALVTLNQAIEVANKAGYLGDNLLGSGKAFHLEVRRAAGAYVCGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VP IL +GA +Y+ +G +RGT Sbjct: 278 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISLASVPIILDKGAQYYADYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE + T EL+ GG G + AV GG LP Q Sbjct: 338 LPIQLAGNLKHNGLVELAFGATLRELLYDFGGGAASG-KPIRAVQVGGPLGAYLPESQFD 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + LG ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 397 -TPLDYEAFAKIWAVLGHGGIVAFDDTVDMSKMARYAFEFCAVESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++++ G + I L+ ++S + ++CALG +P+ + +F Sbjct: 456 EVIDKIRSGKDHAKNIQLVRDLSDTMLNGSLCALGGMTPYPVLSALNHF 504 >gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 627 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 226/369 (61%), Gaps = 6/369 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +INEV SGLRGRGG GF TG KWSF + Y++ N DE +PG DR +M P Sbjct: 185 VINEVTESGLRGRGGGGFPTGRKWSFAAASPGTK-KYIICNGDEGDPGAFMDRSVMEGNP 243 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H++IEG +IA +AIGA +IY R E+ + ++ A+ + A GLLG+N LG + + Sbjct: 244 HSVIEGMMIAGYAIGADEGYIYARAEYPLAIQRMRKAITDAEAIGLLGNNI-LGSNFNFK 302 Query: 163 VH--HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 +H GAGA++CGEETAL+ S+EG++G PR +PPFPA GL+GCPT +NNVE++A + I Sbjct: 303 IHIKEGAGAFVCGEETALIASIEGQRGMPRPRPPFPAVKGLWGCPTVINNVETLANLRYI 362 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + GA+ + +G ++ GTK F+++G + VE M IT E++ GG+R G Sbjct: 363 INNGAALFKSYGTNHSAGTKTFALAGQIQNTGLVEVPMGITLREIVFDIGGGLREG-KKY 421 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S CL ++ +DYD L + G+ +G+ ++VM T +++ F Sbjct: 422 KAVQIGGPSGGCLTEEKLD-LPLDYDELIKAGAMIGSGGLVVMGDDTCMVETAKFFMSFV 480 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ++ESCG+C PCREGT M+ ++ ++ +G + ++ +L E++ +++ ++C LG A P Sbjct: 481 QNESCGKCVPCREGTKQMLALLTKITEGKGTEEDLVVLEELAHSVKDGSLCGLGKTAPNP 540 Query: 401 IQGLIKNFR 409 + ++ FR Sbjct: 541 VLTTLRYFR 549 >gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 630 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 220/379 (58%), Gaps = 8/379 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I E+ SGLRGRGG GF TG KWS + K D Y++ NADE +PG DR I+ +P Sbjct: 189 VIKEITDSGLRGRGGGGFPTGKKWS-LAKDSKDDIKYIICNADEGDPGAFMDRAILEGDP 247 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159 +++IE IA +AIGA IY+R E+ + L A+++ G++G S +DV Sbjct: 248 NSIIEAMAIAGYAIGASKGLIYIRAEYPLAVQRLMIAIEQAKEIGVIGEGILGSSFNFDV 307 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I +GAGA++CGEETAL+ S+EG +G+P KPPFPA GL+ PT+VNNVE+ A + Sbjct: 308 EI--KYGAGAFVCGEETALVHSIEGCRGEPTTKPPFPAEKGLFNKPTSVNNVETFANITA 365 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ G+ W+S G ++GTK+F+++G + VE M I +E+I + GGI+ + Sbjct: 366 IINNGSQWFSSIGTNTSKGTKVFALAGKIKNVGLVEVPMGIKLEEIIYEIGGGIKDNKE- 424 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S C+P+ + I DY+ L +GS +G+ +IVMD ++ F Sbjct: 425 FKAVQTGGPSGGCIPSMLLDLPI-DYESLNAVGSMMGSGGMIVMDEDDCMVDIAKFYLEF 483 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G ++ ++ ++V+G + +I L ++SK I+ +C LG A Sbjct: 484 IVDESCGKCTPCRVGNKRLLEILNKIVEGKGTEDDIKKLKDLSKVIKDTALCGLGQTAPN 543 Query: 400 PIQGLIKNFRPLIEERIDQ 418 PI + F +D+ Sbjct: 544 PILSTMTYFMDEYNAHVDE 562 >gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 633 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/398 (37%), Positives = 225/398 (56%), Gaps = 6/398 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 RG++ V+ + II VK SGLRGRGG GF TG+KW K +R +++ NAD Sbjct: 175 RGYYAFVNALTNTKPSDIIKTVKESGLRGRGGGGFPTGIKWETCAKHHGNR--HIICNAD 232 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR I+ +PH+++EG +IA+ AIG+ F YVR E+ L A+ + A Sbjct: 233 EGDPGAYMDRSILEGDPHSVLEGMLIAALAIGSSSGFFYVRNEYPLAVSRLITAIKQAEA 292 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GLLG N + G+ ++ + GAGA++CGE TAL+ SLEG G+PR K G Sbjct: 293 YGLLGGNIAGTGFSFNVKISRGAGAFVCGESTALMSSLEGLVGRPRAKYVHTVEKGFRDS 352 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 P+ +NNVE+ A +P I+ +GA W+SG G E+++GTK+FS+ G + VE M I + Sbjct: 353 PSNLNNVETYANIPPIVLKGAPWFSGMGTEHSKGTKVFSLVGKIKNTGLVEVPMGINLKD 412 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ GG+ AV GG S C+P + + DY L E+GS +G+ +IVMD Sbjct: 413 IVFSIGGGVP-KKKKFKAVQTGGPSGGCIPENLIDLPV-DYQKLAEVGSIMGSGGMIVMD 470 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 + T ++ F K ESCGQC PCREG M+ ++ + +G + +I+LL E+ Sbjct: 471 QDTCMVDVARYFLDFLKEESCGQCNPCREGIKQMLDILTDICQGNGKDGDIELLEELGSM 530 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 I+ ++C LG +A P+ I FR E I ++ +C Sbjct: 531 IQKFSLCGLGTSAPNPVLTTILYFRDEYEAHI-KHKKC 567 >gi|113866668|ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] gi|113525444|emb|CAJ91789.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 520 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/410 (37%), Positives = 223/410 (54%), Gaps = 5/410 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S Y+V NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 160 FPTGIKWKTVLGAQSAV-KYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L++A+ A+G LG + + G + V GAGAY+CGEETAL Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT +NNV S+A VP IL RGA +Y +G +RG Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVPVILARGAQYYRDYGMGRSRG 338 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESRF 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ G +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 398 D-VPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 506 >gi|295112908|emb|CBL31545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Enterococcus sp. 7L76] Length = 363 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/331 (40%), Positives = 195/331 (58%), Gaps = 6/331 (1%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP A+VGLY PT Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVES A VP ILR G + G + GTKL +SGH+ E ++ +E+I Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269 Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 E++ GG G +L + GG S P +R + Y+ L +G+ A++VMD Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 >gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] Length = 564 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 215/369 (58%), Gaps = 23/369 (6%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+ ++ SGLRG GGAGF G KW + + P + VN DE EPGT KDR + +P Sbjct: 211 IISMLEESGLRGLGGAGFPAGRKWRIVRQ--QPAPRLMAVNIDEGEPGTFKDRYYLERDP 268 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +EG +IA++A+G F+Y+R E+ R+ L+ + LL ++ + Sbjct: 269 HRFLEGTLIAAWAVGIDEIFLYLRDEYAGCRQLLEREL------ALLHADPPCQLP-QLH 321 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 + GAGAYICGEE+A++ESLEGK+G PRL+PP+ A VGL+G PT +N+E++ V I+ Sbjct: 322 LRRGAGAYICGEESAMIESLEGKRGMPRLRPPYVAQVGLFGRPTLEHNLETLYWVREIVE 381 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 +G W+S GR +G + FS+SG V P IT ELIE++CGG+ G + L Sbjct: 382 KGPDWFSSQGRHGRQGLRSFSVSGRVKKPGVHLAPAGITLKELIEEYCGGMLEGHE-LYG 440 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVF 339 PGG+S LPA M +D+D L+ G +G+AA+IV DR+ ++ R F Sbjct: 441 YFPGGASGGILPA-SMGDIPLDFDTLQPYGCFIGSAAIIVFSQHDRAREVALNAMR---F 496 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ++ ESCGQCTPCR GT ++ME + LL E+++ + +IC LG AA Sbjct: 497 FEDESCGQCTPCRVGTAKASKLME------VSTWDQPLLEELAQAMADASICGLGQAAPN 550 Query: 400 PIQGLIKNF 408 P++ ++K F Sbjct: 551 PLRCVMKYF 559 >gi|226227790|ref|YP_002761896.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27] gi|226090981|dbj|BAH39426.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27] Length = 520 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 224/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q R+ F + + SL D + G +++ + I+ E+ ASGLRGRGGA F Sbjct: 96 LAEQVRLTFARIGRIDPLSLDDYRTAGGLLGLERAIGMDSAGIVREITASGLRGRGGAAF 155 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 156 PAGIKWETVRNARAPQ-KYVVCNADEGDSGTFADRLLMEADPFQLIEGMTIAALAVGATQ 214 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ + A+ ++G+LG++ + DI + G GAYICGEETALL Sbjct: 215 GYVYLRSEYPYAAQIFGEALARARSAGMLGASVCGSSHAFDITLRIGGGAYICGEETALL 274 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV + A +L RGA Y+ G + + GT Sbjct: 275 ESLEGKRGVVRAKPPLPALQGLFGQPTVINNVLTFAAATDVLARGAQHYASHGLDRSTGT 334 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F + G++ VE IT +L+E+ GG G L A+ GG LPA Q Sbjct: 335 MPFQLGGNIQRGGLVELPFGITLRDLVERFGGGSYSG-RALRAIQVGGPLGAYLPASQWD 393 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + Y+ +G+ LG ++ D + D+ F HESCG+CTPCR G+ + Sbjct: 394 -TPLTYEHFAAIGAMLGHGGIVAFDDTVDMAAQAEFAMAFCAHESCGKCTPCRIGSTRGV 452 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++RL + + + +LL E+ + +E ++CALG P++ ++K+F Sbjct: 453 EVIQRLRRREQVRDQWNLLEELCETMELGSLCALGGLTPMPVRSVMKHF 501 >gi|225405663|ref|ZP_03760852.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme DSM 15981] gi|225042808|gb|EEG53054.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme DSM 15981] Length = 1048 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/411 (37%), Positives = 239/411 (58%), Gaps = 9/411 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKV 72 ++ SL ++R + + K L ++ ++ VK +GLRGRGGAGF TG+KW + V Sbjct: 162 MEFSSLEAYVARDGYAALAKALHGMTQEDVVTVVKDAGLRGRGGAGFPTGVKWEAGLKAV 221 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 D ++V NADE +PG DR ++ +PH++IEG ++ +AIGA ++YVR E+ Sbjct: 222 SGDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIGASKGYVYVRAEYPIA 281 Query: 133 RESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 E L A+D+ A+G+LG + S +D++I + GAGA++CGEET+LL S+EGK+G+P Sbjct: 282 VERLGNAIDQARAAGILGEHILGSNFSFDLEIRI--GAGAFVCGEETSLLASIEGKRGEP 339 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R KPPFP GL+ PT +NNVE++A V I+ G+ WY FG E + GTK+F+++G + Sbjct: 340 RQKPPFPFEKGLFESPTIINNVETLANVAPIVLNGSQWYRQFGTEKSAGTKVFALAGDIV 399 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 +E M ++I K GG G A+ GG S CL + + DY+ L Sbjct: 400 NAGIIEVPMGTILGDIIYKI-GGGIIGGKKFKAIQSGGPSGGCLTKEHLNTPV-DYESLA 457 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 ++G+ +G+ +IVM+ T ++ F ESCG+C PCR GT M+ ++ER+ +G Sbjct: 458 KLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTRRMLEILERITEGK 517 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + ++DLL E++ I+ +C LG A P+ +K FR E I H Sbjct: 518 GEPGDLDLLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRDEYEAHIYDKH 568 >gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] Length = 490 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 232/416 (55%), Gaps = 5/416 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q RI T G + +SL D ++ ++ + K L ++ +K +GLRGRGG GF TG Sbjct: 9 QLRIATRNCGFIDPESLDDYIAVRGYEALAKALTMTPAEVVEIIKVAGLRGRGGGGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW +D+ Y+V NADE +PG DR ++ +PH+++E I +AIGA + Sbjct: 69 VKWGIALSNAADQ-KYIVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATLGAV 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + L+ A+D+ A GLLG N G+D DI + +GAGA++CGEETAL++S+ Sbjct: 128 YIRAEYPLAIKRLRKAIDDARAMGLLGKNIFGSGFDFDIEIKYGAGAFVCGEETALIKSM 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG +G+P KPPFPA G + PT VNNVE+ A VP I+ +GA W++G G ++GTK+F Sbjct: 188 EGHRGEPVSKPPFPAQSGYWAKPTIVNNVETFANVPAIIIKGADWFAGIGTATSKGTKVF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G + +E M T E+I GG G + AV GG S L + AI Sbjct: 248 ALAGKIVNVGLIEVPMGTTLREVIFDIGGGCPDGKE-FKAVQTGGPSGGALANKDLDVAI 306 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + ++ Sbjct: 307 -DYESLIARKSMMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEIL 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++ KG K ++ L +S NI+ +C LG PI + F E + Q Sbjct: 366 DKITKGHGTKADLARLKSLSDNIKDTALCGLGQTMPNPILSTMDTFGHEYEAHVTQ 421 >gi|260466532|ref|ZP_05812721.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075] gi|259029681|gb|EEW30968.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075] Length = 518 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 208/369 (56%), Gaps = 8/369 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ +V SGLRGRGGAGF TG+KW + DR Y+V NADE + T DR IM +P Sbjct: 141 IVKQVTESGLRGRGGAGFPTGIKWKTVLDTTGDR-KYIVCNADEGDSATFADRMIMEGDP 199 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159 LIEG IA A GA F+Y+R E+ + AV+ +G+LG+N S +D+ Sbjct: 200 FVLIEGMAIAGIATGATKGFVYIRSEYPHAVAVMNKAVEVARKAGVLGTNVLGSPNAFDM 259 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I V GAGAY+CGEET+LL SLEGK+G R KPP PA GL+G PT +NNV S+A VP Sbjct: 260 EIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLPAIQGLFGKPTVINNVISLASVPV 317 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 ++ +GA++Y FG +RGT I+G+V + E + +T E+++ GG G Sbjct: 318 VMDKGAAFYKDFGMGRSRGTIPIQIAGNVKHGGLFETAFGLTLGEIVDDIGGGTATGRP- 376 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AV GG P + DY+ + +G A + V D + D++K F Sbjct: 377 VKAVQVGGPLGAYFPR-ALFDTPFDYEEFAKRDGLIGHAGITVFDDTADMLKQARFAMEF 435 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CTPCR G+ + ++RL GI ++ + L+ ++ ++ ++CALG + Sbjct: 436 CAIESCGKCTPCRIGSTRGVETIDRLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPY 495 Query: 400 PIQGLIKNF 408 P+ I +F Sbjct: 496 PVMSSITHF 504 >gi|220931145|ref|YP_002508053.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] gi|219992455|gb|ACL69058.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] Length = 408 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 216/381 (56%), Gaps = 8/381 (2%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + + L+ + II E+K SGLRGRGGAGF TG+KW K + Y++ N DE EPGT Sbjct: 23 LKRALDMDKKDIIEELKKSGLRGRGGAGFPTGLKWELALKEKAGE-KYIICNGDEGEPGT 81 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR ++ + P ++EG +I ++ IGAH +IY+RGE+ + + E G+LG Sbjct: 82 FKDRYLLENSPLKVLEGILIGAYTIGAHQGYIYIRGEYALPINIFRQVIKEAKKRGILG- 140 Query: 152 NSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 N +G Y D+ + GAGAY+CG+ET+L+ S+EGK+G R+KPP+P GL+ PT VN Sbjct: 141 NRVMGSDYSFDLKLIKGAGAYVCGDETSLINSIEGKRGTSRIKPPYPTRQGLFNKPTVVN 200 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSITFDELIEK 268 NVE++A I+ +GA Y G E +RGTKL +SG + P E E ++T ELI+ Sbjct: 201 NVETLAAAAEIILQGADKYGSMGTEQSRGTKLVCLSGDICNPGVYEVEFGTMTIKELIDT 260 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 GG++ L VIPGG S L ++ Y+ +++ GS LG+ AV+V+ Sbjct: 261 FGGGVKCS-SGLKFVIPGGISTSVLKDDEL-DIPYTYEDIEKKGSSLGSGAVVVVSEDHY 318 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME-RLVKGIAQKREIDLLYEVSKNIEG 387 + + +S F+ E+CG C PCREG + +++ ++ G + E L+ ++ + I Sbjct: 319 LPDLMLNVSRFFMDETCGTCFPCREGNRRVHLLLKNKISDGRFDRDEKKLISDIGRAIHL 378 Query: 388 RTICALGDAAAWPIQGLIKNF 408 C LG + + ++ F Sbjct: 379 AARCGLGQTSLNFVTSVLNKF 399 >gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] Length = 641 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/408 (37%), Positives = 229/408 (56%), Gaps = 5/408 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ D + RG + + K L + +++EV + LRGRGG GF G KW + Sbjct: 147 INPQNIEDYIQRGGYAALVKTLFHMTPESVLDEVDKANLRGRGGGGFPAGKKWR-TTRDA 205 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +D Y++VN DE +PG DR IM PH ++EG I +FAIGA +IYVR E+ Sbjct: 206 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 265 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E+L AA+ + GLLG N G+D + VH GAGA++ GE +AL+ ++EG+ G+PR K Sbjct: 266 ENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 325 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++GTK+F++ G VN Sbjct: 326 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSKGTKIFALVGKVNNTG 385 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE M T ++I K GG+R G + AV GG S C+P + + DYD L ++G Sbjct: 386 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 443 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ +I+MD T ++ F ESCG+C PCREG ++ ++ R+ +G Sbjct: 444 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 503 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++D L ++S + +CALG A P+ +K FR + I H Sbjct: 504 ADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 551 >gi|307544488|ref|YP_003896967.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581] gi|307216512|emb|CBV41782.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581] Length = 510 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/409 (38%), Positives = 229/409 (55%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F+ + S++D ++ + ++ L I++EVK SGLRGRGGA F Sbjct: 99 LARQQRLTFSRIGVTDPLSIADYLALDGFRGLETALTLEPQAIVDEVKTSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + SD+ Y+V NADE + GT DR M +P+ LIEG IA A+GA Sbjct: 159 PTGIKWQTVHDAPSDQ-KYIVCNADEGDSGTFADRLAMECDPYMLIEGMAIAGLAVGATQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L A+ +G LG++ + G D+ V GAGAYICGEET+LL Sbjct: 218 GYIYLRSEYPLAHRILDEAIARAEQAGYLGADIRGSGRRFDLEVRLGAGAYICGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VP IL RG Y+ +G +RGT Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLFGRPTVVNNVLSLAAVPYILDRGGEAYANYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V VE + T EL+E GG L AV GG LP Q Sbjct: 338 LALQLAGNVKRGGLVELAFGTTLRELMEDFGGGTF-TERPLRAVQVGGPLCAYLPESQW- 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+G+G V++ D S D+ + F ESCG+CTPCR G+ + Sbjct: 396 DLPLDYETFASVGAGVGHGGVVMFDDSVDMAEQARFSMEFCAVESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R++ + ++LL E+ + +E ++CA+G +P++ ++ +F Sbjct: 456 EVIDRILANQDRDANLELLDELCETMEDGSLCAMGGMTPFPVKSVMTHF 504 >gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] Length = 599 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 233/411 (56%), Gaps = 12/411 (2%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +++++ + + + + K+L E +++ +K SGLRGRGG GF T Sbjct: 116 QKRIALHNCGVIDPENINEYIGKDGYFALAKVLQEMTSQEVVDVIKESGLRGRGGGGFPT 175 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F D Y++ NADE +PG DR I+ PH++IE IA +AIGA+ + Sbjct: 176 GVKWQFALDEPGDE-KYVICNADEGDPGAFMDRSILEGNPHSVIEAMAIAGYAIGANHGY 234 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ E L +A+ + GLLG N G+D D+ + GAGA++CGEETAL++S Sbjct: 235 IYIRAEYPIAVERLTSAIKQARELGLLGKNIFDSGFDFDLEIRLGAGAFVCGEETALIKS 294 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G P KPPFPA+ G++G PT +NNVE+ A + I++ GA W+ G E + GTK+ Sbjct: 295 IEGERGMPNPKPPFPAHKGVWGKPTIINNVETYANIAQIIQHGAKWFRSIGTETSPGTKV 354 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQM 298 F++ G + +E M T E+I + I GG N AV GG S CL Q+ Sbjct: 355 FALGGKIVNTGLIEVPMGTTLREVIYE----IGGGCPNHKRFKAVQTGGPSGGCLTEEQL 410 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I +D L ++GS +G+ +IV+D ++ F ESCG+CTPCR GT M Sbjct: 411 DTPI-GFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKRM 469 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++E++ +G +D L ++ I+ +C LG A P+ I FR Sbjct: 470 LELLEQICEGKGTMATLDELEMLASTIQDTALCGLGQTAPNPVLSTIHQFR 520 >gi|170740591|ref|YP_001769246.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46] gi|168194865|gb|ACA16812.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46] Length = 519 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 155/391 (39%), Positives = 216/391 (55%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S++D + + + + LE G ++ V SGLRGRGGAGF TG+KW+ + + +DR Sbjct: 117 SVADYRAHRGYRGLARALEIGAPATVDAVTLSGLRGRGGAGFPTGIKWNTVMRAEADR-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P TLIEG IA A+GA +IY+R E+ E+L+A Sbjct: 176 YVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGAARGYIYLRSEYPNACETLRA 235 Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G D + V GAGAYICGEET+LLESLEG++G R KPP PA Sbjct: 236 AIAAGERAGVLGRNVMGSGRDFHLEVRLGAGAYICGEETSLLESLEGRRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV S A VP IL G Y+ +G +RGT ++G+V +E + Sbjct: 296 LKGLFGRPTLVNNVLSFAAVPWILDHGGEAYAAYGMGRSRGTLPIQLAGNVRQGGLIETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT E+IE GG R G A + GG P G + MDY+ +G Sbjct: 356 FGITLREVIEDFGGGTRSGRPVRAAQV-GGPLGAYFPEG-LFDTPMDYEAFAARKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 V+V D S D+ + F ESCG+CTPCR G M+RL+ G A + L Sbjct: 414 GGVVVFDDSVDMARQARFAFEFCAVESCGKCTPCRIGAVRGRETMDRLLAGEAPAEPLRL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I +F Sbjct: 474 IEDLCEVMTDGSLCAMGGLTPVPVMSAITHF 504 >gi|116254125|ref|YP_769963.1| NAD-dependent formate dehydrogenase beta subunit [Rhizobium leguminosarum bv. viciae 3841] gi|115258773|emb|CAK09879.1| putative NAD-dependent formate dehydrogenase beta subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 518 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/402 (36%), Positives = 215/402 (53%), Gaps = 10/402 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + I+ E+ SGLRGRGGAGF TG+KW + +R Sbjct: 117 SLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAGFPTGIKWKTVLDAAGER-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG I+ A GA F+Y R E+ + Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFVYTRSEYPHAIAVMTE 235 Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV +G+LG S G DI V GAGAY+CGEETALL SLEGK+G R KPP PA Sbjct: 236 AVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGIVRAKPPLPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL+ CPT +NNV S+A VP I+ +GA++Y FG +RGT I+G+V Y E + Sbjct: 296 HKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLFETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ +++++ GG G + AV GG P + DY+ +G Sbjct: 356 FGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYESFAAKDGLIGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D++K F ESCG+CTPCR G+ + +++ GI ++ L Sbjct: 414 AGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRAL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF------RPLIE 413 L ++ ++ ++CALG +P+ + +F PL+E Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMNHFPEDFSPAPLVE 515 >gi|170720892|ref|YP_001748580.1| NADH dehydrogenase [Pseudomonas putida W619] gi|169758895|gb|ACA72211.1| NADH dehydrogenase (quinone) [Pseudomonas putida W619] Length = 519 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/410 (37%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 T Q +F + SL D + G + +++ + G ++ V SGLRGRGGA F Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEQAVALGGAEVVAAVLDSGLRGRGGAAFPA 159 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + + + Y+V NADE + GT DR +M +P LIEG +IA A+GA + Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L A +G LG + + G D+ V GAGAYICGEETALLES Sbjct: 219 IYVRSEYPDAIRVLNEAFVIARDAGYLGFDVAGSGQAFDLEVRVGAGAYICGEETALLES 278 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G R KPP PA GL+G PT V+NV ++A VPTIL +GA++Y FG + GT Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPTILAKGAAFYRDFGMGRSLGTMP 338 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G++ + VE + +T EL+E + GG G L A GG +P Sbjct: 339 FQLAGNIRHGGLVERAFGLTLRELVEGYGGGTASG-RPLKAAQVGGPLGAWVPPSHFD-T 396 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ MG+ LG V+V D + ++ F ESCG+CTPCR G+ M V Sbjct: 397 PLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSIRGMEV 456 Query: 362 MERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 457 VDRLIASSDLTERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYF 506 >gi|121603736|ref|YP_981065.1| NADH dehydrogenase (quinone) [Polaromonas naphthalenivorans CJ2] gi|120592705|gb|ABM36144.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polaromonas naphthalenivorans CJ2] Length = 600 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 211/377 (55%), Gaps = 27/377 (7%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E+ + ++ ++ SGLRG GGAGF G KW + P + VN DE EPGT KDR Sbjct: 241 EEDAERVLAAMENSGLRGLGGAGFPAGRKWRIVRG--QPAPRLMAVNIDEGEPGTFKDRV 298 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +PH +EG ++A+ +G +IY+R E+ R LQA + +KL Sbjct: 299 YLERDPHRFLEGVLVAAQVVGIEACYIYLRDEYHDCRALLQAEI------------AKLQ 346 Query: 157 YDVD-----IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 D I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT +N Sbjct: 347 ADPPCPLPLIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAEVGLFGRPTLEHNF 406 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++ V I+++G W+S FGR +G + FS+SG V P IT ELI+++CG Sbjct: 407 ETLYWVRDIVQKGPQWFSSFGRNGRKGLRSFSVSGRVKLPGVKLAPAGITLLELIDEYCG 466 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+ G L A +PGG+S PA +D+D L+ G +G+AAVIV+ + Sbjct: 467 GMADG-HTLYAYLPGGASGGIFPASHA-NVPLDFDTLQPHGGFIGSAAVIVLGQHDKARD 524 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 A + F+ ESCGQCTPCR GT R+M+ A + + L +++ + +IC Sbjct: 525 AALNMMRFFASESCGQCTPCRVGTAKAARLMQ------APRWDNATLEDLNIVMTDASIC 578 Query: 392 ALGDAAAWPIQGLIKNF 408 LG AA P++ + K F Sbjct: 579 GLGQAAPNPVRCVQKYF 595 >gi|134301120|ref|YP_001114616.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134053820|gb|ABO51791.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 575 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 225/393 (57%), Gaps = 5/393 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + ++ G ++ + K L + R +I VK SGLRGRGG GF TG+KW K D Sbjct: 156 EDIYEYIAVGGYEALGKALTQMSRAEVIEIVKKSGLRGRGGGGFPTGLKWEITSKQ-EDE 214 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 +++ NADE +PG DR I+ +PH++IE I ++AIGA +Y+R E+ L Sbjct: 215 EKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGADKGIVYIRAEYPLAISRL 274 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + G+LG ++ D+ + +GAGA++CGEETAL+ S EGK+G+P KPP+ Sbjct: 275 TTALRQARELGVLGKGIFGTSFNFDVRLKYGAGAFVCGEETALINSCEGKRGEPNYKPPY 334 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G +G PT VNNVE+ A +P I+ RGA W++ G E ++GTK+F+++G +N VE Sbjct: 335 PAEEGYWGHPTCVNNVETFANIPVIMTRGAEWFASIGTEKSKGTKVFALAGKINNVGLVE 394 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M ITF E+I GGI G AV GG S + + I DYD L E+GS + Sbjct: 395 VPMGITFREIIFDIGGGIPHG-KKFKAVQTGGPSGGVITEKGLDTPI-DYDSLLEIGSMM 452 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD +++ F E+CG+C P R GT + ++ ++ G A +I Sbjct: 453 GSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCVPGRIGTKRLFEMLHKITSGKATMADI 512 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 D L +++ ++ ++C L A P+ +K+F Sbjct: 513 DALKQLAYMVKDSSLCGLCQTAPNPVISTMKHF 545 >gi|332715498|ref|YP_004442964.1| NAD-dependent formate dehydrogenase subunit beta [Agrobacterium sp. H13-3] gi|325062183|gb|ADY65873.1| NAD-dependent formate dehydrogenase beta subunit [Agrobacterium sp. H13-3] Length = 518 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + +++ + I+ +V SGLRGRGGAGF TG+KW + +D+ Sbjct: 117 SLEDYRANKGMKGLERAVALTPAEIVKQVTDSGLRGRGGAGFPTGIKWKTVADATADQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A+GA +IY R E+ +++ Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGATKGYIYTRSEYPHAVRTMEK 235 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+D G++G++ G D+ V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 236 AIDIALREGVIGASVLGSGRAFDLEVRMGAGAYVCGEETSLLNSLEGKRGTVRAKPPLPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV S++ +P I+ RGA++Y FG + GT ++G++ + E + Sbjct: 296 LQGLFGKPTVVNNVISLSSIPVIMDRGAAFYRDFGIGRSHGTIPIQLAGNIRHGGLYETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + +L+ + GG G + AV GG P + + DY+ G +G Sbjct: 356 FGLPLGQLVNEIGGGTITGRP-VKAVQVGGPLGAYFPV-SLFDTLFDYEAFTTAGGLIGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D+++ F ESCG+CTPCR G+ + ++++ GI +R L Sbjct: 414 AGIVVFDDTADMLRQARFALEFCAVESCGKCTPCRIGSTRGVETVDKISLGIEAERNTAL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++ ++CALG +P+ +++F Sbjct: 474 LEDLCETMKFGSLCALGGFTPYPVMSALRHF 504 >gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 628 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 148/400 (37%), Positives = 233/400 (58%), Gaps = 8/400 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +S+++ ++ G + V K L + + I++E+ S LRGRGG GF TG KW+ + + Sbjct: 154 INAESINEYIAMGGYQAVAKALFDMTSESIVDEISDSYLRGRGGGGFPTGKKWAQVLRQ- 212 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 ++ Y+V N DE +PG DR +M +PH +IEG +IA A AH +IYVR E+ Sbjct: 213 TEETKYVVCNGDEGDPGAFMDRSMMEGDPHRMIEGMIIAGIATKAHYGYIYVRAEYPLAV 272 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L+ A+++ + GLLG N G+ + + GAGA++CGE +AL S+EG +G PR+K Sbjct: 273 HRLETAIEQARSLGLLGCNILGSGFSFALKISQGAGAFVCGEGSALTASIEGNRGMPRVK 332 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PP GL+ PT +NNVE+ VP+I+ +GA WY +G E N GTK F+++G+V Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIILKGADWYKTYGLEKNYGTKAFALTGNVMNTG 392 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---MDYDGLK 309 +E M T ++I GG++GG AV GG S CL + +D+D LK Sbjct: 393 LIEVPMGTTLRKVIYDIGGGVKGG--EFKAVQIGGPSGGCLVLNAENDHLDMPLDFDSLK 450 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 ++G+ +G+ ++VM+ + +++ F ++ESCG+C PCREGT M+ ++ +V+G Sbjct: 451 KVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCVPCREGTKRMLELLTDIVEGR 510 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +DLL E+++ I +C LG AA P+ IK FR Sbjct: 511 GTLEHLDLLEELAETISATALCGLGKTAASPVVSTIKYFR 550 >gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] gi|151281250|gb|ABR89660.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 518 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 145/409 (35%), Positives = 220/409 (53%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL D ++ + + K + I+ EV SGLRGRGGA F Sbjct: 99 LKKQERLQFVRVGITDPVSLEDYLAHDGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + + Y+ NADE + GT DR +M +P LIEG IA A+ A Sbjct: 159 PTGIKWKTVLGAEAAQ-KYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATE 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ A+G LG N G ++ V AGAY+CGEETA+L Sbjct: 218 GYIYVRSEYPHSIANLNEAIVAANAAGYLGENILGSGRTFNLQVRKAAGAYVCGEETAML 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S++ VP IL RGA +Y +G +RGT Sbjct: 278 ESIEGKRGMVRAKPPLPALQGLFGQPTVINNVISLSAVPLILSRGAEFYKNYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ Y VE++ +T EL+ GG G + AV GG +P + Sbjct: 338 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPE-SLF 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + S +G ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 396 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAEESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 VM++++ + ++I LL ++ + ++CA+G+ +P+ + +F Sbjct: 456 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHF 504 >gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1] gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1] Length = 597 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 154/411 (37%), Positives = 233/411 (56%), Gaps = 12/411 (2%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +++ + +++ + + K+L E +++E+K SGLRGRGG GF T Sbjct: 114 QKRIALHNCGVIDPENIQEYIAKDGYFALGKVLTEMKPQEVVDEIKESGLRGRGGGGFPT 173 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F D Y++ NADE +PG DR I+ PH++IE IA +AIGAH + Sbjct: 174 GLKWQFALNEPGDE-KYVICNADEGDPGAFMDRSILEGNPHSVIEAMEIAGYAIGAHHGY 232 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ E L+ A+ E GLLG++ G+ D+ + GAGA++CGEETAL++S Sbjct: 233 IYIRAEYPIAVERLKHAIQEAKELGLLGNDIFGSGFHFDLEIRLGAGAFVCGEETALIQS 292 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G P KPPFPA+ G++G PT +NNVE+ A + I+ GA W+ G E + GTK+ Sbjct: 293 IEGERGMPSPKPPFPAHKGVWGKPTIINNVETYANIAQIITHGAKWFRSIGTETSAGTKV 352 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQM 298 F++ G + VE M T E+I + I GG N AV GG S CL Q+ Sbjct: 353 FALGGKIVNTGLVEVPMGTTLREVIYE----IGGGCPNRKSFKAVQTGGPSGGCLTESQL 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I +D L ++GS +G+ +IV+D ++ F ESCG+C+PCR GT M Sbjct: 409 DTPI-GFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCSPCRIGTKRM 467 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++E + +G +D L ++ I+ +C LG +A P+ I FR Sbjct: 468 LELLEDICEGRGTMETLDELEVLATTIKDTALCGLGQSAPNPVLSTILQFR 518 >gi|13474499|ref|NP_106068.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium loti MAFF303099] gi|14025253|dbj|BAB51854.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium loti MAFF303099] Length = 518 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 214/393 (54%), Gaps = 8/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL S G + + I+ +V SGLRGRGGAGF TG+KW + S+R Sbjct: 117 SLDAYKSLGGLKGLQNAVAMAPADIVKQVTESGLRGRGGAGFPTGIKWKTVLDTTSER-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + T DR IM +P LIEG IA A GA F+Y+R E+ ++ Sbjct: 176 YIVCNADEGDSATFADRMIMEGDPFVLIEGMAIAGIATGATKGFVYIRSEYPHAVATMNK 235 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV+ +G+LG N S +D++I V GAGAY+CGEET+LL SLEGK+G R KPP Sbjct: 236 AVEIARKAGVLGVNVLGSPNAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPL 293 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNV S+A VP I+ +GA++Y FG +RGT I+G+V E Sbjct: 294 PAIQGLFGKPTVINNVISLASVPIIMDKGAAFYKDFGMGRSRGTIPIQIAGNVRNGGLFE 353 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +T E+++ GG G + AV GG P + DY+ + + Sbjct: 354 TAFGLTLGEIVDDIGGGTATGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEEFAKRDGLI 411 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G A + V D + D++K F ESCG+CTPCR G+ + ++RL GI ++ + Sbjct: 412 GHAGITVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRGIETIDRLAAGIEPEKNL 471 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L+ ++ ++ ++CALG +P+ I +F Sbjct: 472 ALVTDLCNTMKFGSLCALGGFTPYPVMSSITHF 504 >gi|194288743|ref|YP_002004650.1| NAD-dependent formate dehydrogenase subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193222578|emb|CAQ68581.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 520 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 152/410 (37%), Positives = 222/410 (54%), Gaps = 5/410 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 100 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 160 FPTGIKWKTVLGAQAAV-KYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVGAE 218 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L++A+ A+G LG + + G + V GAGAY+CGEETAL Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT +NNV S+A VP IL RGA Y +G +RG Sbjct: 279 LESLEGRRGVVRAKPPLPALKGLFGQPTVINNVISLATVPVILARGAQCYRDYGMGRSRG 338 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 339 TLPFQLAGNIRHGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESRF 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ G +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 398 D-VPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + VM+R++ G R + L+ ++ + ++CA+G +P+ + F Sbjct: 457 VEVMDRIIAGEQPVRHVQLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 506 >gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 526 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 144/399 (36%), Positives = 222/399 (55%), Gaps = 8/399 (2%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G++ I + R II+ +K SGLRGRGGAGF TG KW D Y++ NADE Sbjct: 68 GYFALNKAIFDLDRKEIIDIIKDSGLRGRGGAGFPTGRKWEAAFNQDID-TKYIICNADE 126 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR ++ +PH+++E I + AIG+ +IYVR E+ + +SLQ A+ + Sbjct: 127 GDPGAFMDRSVLEFDPHSVLEAMAICARAIGSKQGYIYVRAEYPKAVKSLQNAIKQAREY 186 Query: 147 GLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 LLG N S +D+D+ GAGA++CGE TAL+ES+EGK+G PR K GL+G Sbjct: 187 NLLGENIMGSDFSFDIDL--RLGAGAFVCGEGTALMESIEGKRGMPRNKEFRTTVKGLWG 244 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 PT +NNVE+ A + I+ +G+SW+ FG E + GTK+F++ G V VE M + Sbjct: 245 KPTVINNVETFANIAQIINKGSSWFRSFGTEKSPGTKVFALVGKVKESGLVEVEMGTSIK 304 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 +++ GI+ AV GG S C+P ++ D++ LKE+GS +G+ ++VM Sbjct: 305 KIVYDIGLGIQND-KKAKAVQTGGPSGGCIPT-KLFDTACDFESLKEIGSIMGSGGMVVM 362 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 D ++ F ESCG+CTPCR G + +++ L KG A + ++ L E+SK Sbjct: 363 DEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDLTKGKANEETLEKLEELSK 422 Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + ++C LG ++ PI + F+ + + + C Sbjct: 423 IVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVGENKTC 461 >gi|81299090|ref|YP_399298.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942] gi|3947771|emb|CAA73873.1| hoxF [Synechococcus elongatus PCC 6301] gi|81167971|gb|ABB56311.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942] Length = 534 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 220/361 (60%), Gaps = 13/361 (3%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + TG+KW+ + K+ SDR ++V N DE +PG DR ++ +PH +IEG IA++A+GA+ Sbjct: 173 YPTGLKWATVAKMPSDR-KFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGAN 231 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176 ++YVR E+ L A+ + GLLG+ +S+ +D+++ + GAGA++CGEET Sbjct: 232 FGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRI--GAGAFVCGEET 289 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S++G++G PR++PP+PA GL+G PT +NNVE+ A + I+ +GA W++ G + Sbjct: 290 ALIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQGADWFAAIGTPTS 349 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G + +E M I +++ G+ + AV GG S C+P Sbjct: 350 KGTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLA 405 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGT 355 Q+ + DYD L ++GS +G+ ++VMD +TD++ AI R + F + ESCG+C PCR GT Sbjct: 406 QLDTPV-DYDSLIQLGSMMGSGGMVVMDENTDMV-AIARFYMEFCRSESCGKCIPCRAGT 463 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + ++ +L G ++ L ++ ++ ++C LG +A PI ++ FR E R Sbjct: 464 VQLHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESR 523 Query: 416 I 416 + Sbjct: 524 L 524 >gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB] gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Dechloromonas aromatica RCB] Length = 632 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 140/383 (36%), Positives = 209/383 (54%), Gaps = 25/383 (6%) Query: 44 INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP------HYLVVNADESEPGTCKDRDI 97 ++E+K + LRGRGGAGF+TG+KW + C + P +V NADE EPGT KDR + Sbjct: 230 LDEIKRANLRGRGGAGFTTGLKW----EACRNAPLKAGAQRIVVCNADEGEPGTFKDRVL 285 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKL 155 + P + EG +A++A+GA F+Y+RGE+ + L A + LLG + Sbjct: 286 LSRNPDLVFEGMTVAAYAVGATRGFVYLRGEYRYMLDHLNAVLAHRRREKLLGKDILGLP 345 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G D DI +H GAGAY+CGEE+AL+ESLEGK+G PR +PPFP G PT VNNVE+ A Sbjct: 346 GADFDIEIHVGAGAYVCGEESALIESLEGKRGTPRNRPPFPVTNGYLDQPTIVNNVETFA 405 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 I G WY+ G +++ GTKL S+SG P E ++ +++E CG Sbjct: 406 AAALIALNGGDWYAAIGTKHSAGTKLLSVSGDCERPGIYEYPFGVSVRQVLED-CGA--- 461 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + AV G S C+ A Q ++ ++ + G A V + + D+ + Sbjct: 462 --RDTQAVQVSGPSGICI-AEQEFDRVIGFEDIPTAG------AFTVFNNTRDMFEVARN 512 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F++HESCG CTPCR GT + +M++L G+ + + ++++ ++ + C LG Sbjct: 513 YVHFFQHESCGFCTPCRVGTSLLKNLMDKLHNGVGSPYDFAEIEKLNQLLQSMSHCGLGH 572 Query: 396 AAAWPIQGLIKNFRPLIEERIDQ 418 A P+ I+ FRP E R+ Q Sbjct: 573 TACNPVLDTIERFRPAYERRMAQ 595 >gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath] gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath] Length = 561 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 149/377 (39%), Positives = 213/377 (56%), Gaps = 39/377 (10%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I +++SGLRG GGAGF G KW + P + VN DE EPGT KDR + +P Sbjct: 208 VIALLESSGLRGLGGAGFPVGRKWRIV--RAQPAPRLMAVNIDEGEPGTFKDRHYLERDP 265 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEF-------IRERESLQAAVDECYASGLLGSNSKL 155 H +EG +IA++A+G +IY+R E+ +RE + L+ AV Sbjct: 266 HRFLEGMLIAAWAVGIESIYIYLRDEYAGCRQILLRELQQLREAVP-------------- 311 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G +I + GAGAYICGEE+A++ES+EGK+G PRL+PPF A VGL+G PT +N+ES+ Sbjct: 312 GPLPEIQLRRGAGAYICGEESAMIESIEGKRGMPRLRPPFVAQVGLFGRPTLEHNMESLY 371 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 V I+ RG W++G GR + +G + FS+SG V P I+ ELI ++CGG+ Sbjct: 372 WVRDIVERGPDWFTGHGRRDRKGLRSFSVSGRVRKPGVHLAPAGISVRELIAEYCGGMAE 431 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKA 332 G + PGG+S LPA + +D+D L G +G+AAV+V D++ D+ Sbjct: 432 GHE-FYGYFPGGASGGILPA-SLGDLPLDFDTLTPYGCFIGSAAVVVFSTQDKARDLALN 489 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTIC 391 R F+ ESCGQCTPCR GT +M AQ + + LL E++ + +IC Sbjct: 490 AMR---FFAEESCGQCTPCRVGTAKAAALM-------AQPQWDRPLLEELAGAMSDASIC 539 Query: 392 ALGDAAAWPIQGLIKNF 408 LG AAA P++ +K F Sbjct: 540 GLGQAAANPLRCAMKYF 556 >gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7] gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7] Length = 599 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 147/387 (37%), Positives = 221/387 (57%), Gaps = 10/387 (2%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G++ + E +++ +KASGLRGRGG GF G+KW F + Y++ NADE Sbjct: 140 GYFALAKVVSEMTPQEVVDVIKASGLRGRGGGGFPAGVKWQFALNE-PGKEKYVICNADE 198 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR I+ PH++IE IA++AIGA+ +IY+R E+ E L A+++ Sbjct: 199 GDPGAFMDRSILEGNPHSVIEAMAIAAYAIGANHGYIYIRAEYPIAVERLNTALEQAREL 258 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GL+G N + G+D D+ + GAGA++CGEETAL++S+EG++G P KPPFPA+ G++G P Sbjct: 259 GLIGKNIFESGFDFDLELRLGAGAFVCGEETALIQSIEGERGMPNPKPPFPAHKGVWGKP 318 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NNVE+ A + I++ GA W+ G E + GTK+F++ G + VE M T E+ Sbjct: 319 TIINNVETYANIAQIIQHGAEWFRSIGTETSPGTKVFALGGKIVNTGLVEVPMGTTLREV 378 Query: 266 IEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 I + I GG N AV GG S CL Q+ I +D L ++GS +G+ +IV Sbjct: 379 IYE----IGGGCPNHKRFKAVQTGGPSGGCLTEEQLDTPI-GFDELVKLGSMMGSGGMIV 433 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 +D ++ F ESCG+CTPCR GT M+ ++E++ G +D L ++ Sbjct: 434 LDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKRMLELLEQICDGKGTMETLDELELLA 493 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409 I+ +C LG A P+ I FR Sbjct: 494 STIQDTALCGLGQTAPNPVLSTIHQFR 520 >gi|330501361|ref|YP_004378230.1| NADH dehydrogenase [Pseudomonas mendocina NK-01] gi|328915647|gb|AEB56478.1| NADH dehydrogenase [Pseudomonas mendocina NK-01] Length = 523 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 220/412 (53%), Gaps = 8/412 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL D ++ + + + L + I+ EV SGLRGRGGA F Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + C Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWRTVLG-CQAEQKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L + A+G LG + G + + GAGAYICGEETALL Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S+A VP IL +G ++Y +G + GT Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E++ IT EL+ ++ GG G + AV GG LP Q Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGR-PIRAVQVGGPLGAYLPESQFD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG ++V D + D+ F ESCG+CTPCR G+ Sbjct: 399 -TPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457 Query: 360 RVMERLVKGIA---QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ +++ + Q I+LL + + G ++CALG +P+ I +F Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVMSAINHF 509 >gi|323526974|ref|YP_004229127.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001] gi|323383976|gb|ADX56067.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001] Length = 521 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 218/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L+ D + SGLRGRGGA F G+KW + + Sbjct: 116 SIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RAARAAQK 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA GA +IYVR E+ +L+A Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGASAGYIYVRSEYPHSIATLEA 234 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + A+G LG +S LG ++ V GAG+Y+CGEETALLESLEGK+G R KPP P Sbjct: 235 AIAKARAAGWLG-DSVLGCPLRFELFVAKGAGSYVCGEETALLESLEGKRGIVRAKPPVP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGLYG PT +NNV ++A VP I RGA++Y FG +RGT F ++G+V VE Sbjct: 294 ALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G AV GG LP Q MDY+ +G+ +G Sbjct: 354 AFGVTLRELLYDFGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 ++V D ++++ + F ESCG+CTPCR G+ + V+ R+ G R++ Sbjct: 412 HGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGVEVIGRIRNGDTSTRQVQ 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPYPVLSALDHF 503 >gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium ulcerans ATCC 49185] gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] Length = 594 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 158/424 (37%), Positives = 245/424 (57%), Gaps = 14/424 (3%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62 + R N + +++ D + + ++K+L+ RD +I E+ ASGLRGRGG GF T Sbjct: 114 ERRALKNCGVIDPENIEDFLKNDGYKGIEKVLKTMSNRD-VIKEIFASGLRGRGGGGFFT 172 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +++ Y+V NADE +PG DR I+ +PH++IEG +IA +AIGA Sbjct: 173 GIKWEIASNIEAEQ-KYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKGL 231 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ L A++ G LG N LG ++ DI + GAGA++CGEETAL+ Sbjct: 232 VYIRAEYPLAIHRLSVAIEAARKKGFLGKNI-LGTDFEFDIELKFGAGAFVCGEETALIH 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G+P KPP+PA G + PT VNNVE++ VP IL G W+ G E + GTK Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWDKPTVVNNVETLVNVPGILLYGKEWFREVGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N VE M I+ E+I + GGI+ AV GG S CL + Sbjct: 351 VFALAGKINNVGLVEVPMGISLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDLDT 409 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359 I D+D L + GS +G+ ++VMD D + AI + + F ESCG+CTPCR G + Sbjct: 410 PI-DFDTLSKKGSIMGSGGMVVMDED-DCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLY 467 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF-RPLIEERIDQ 418 +++++ +G ++ LL E+S+ I+ ++C LG +A P+ + F +E +D+ Sbjct: 468 EMLDKITQGRGTLEDLHLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVDK 527 Query: 419 YHRC 422 RC Sbjct: 528 --RC 529 >gi|134295064|ref|YP_001118799.1| NADH dehydrogenase (quinone) [Burkholderia vietnamiensis G4] gi|134138221|gb|ABO53964.1| formate dehydrogenase beta subunit [Burkholderia vietnamiensis G4] Length = 525 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 146/410 (35%), Positives = 225/410 (54%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D ++ + L D + + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLAHDGLAGLKNALAMDGDAACDTLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQAAATQ-KYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ ++L+ A++ +G LG++ LG + D+ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIKTLETALERAREAGWLGAHV-LGSAHAFDLHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GLYG PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLYGKPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ + GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R+I LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRNGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|150398096|ref|YP_001328563.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419] gi|150029611|gb|ABR61728.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419] Length = 518 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 150/392 (38%), Positives = 216/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G +++ + I+ EV SGLRGRGGAGF TG+KW + + R Sbjct: 117 SLDDYRAHGGLRGLERAVVMQPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLETPGAR-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A GA +IY R E+ + A Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGATKGYIYTRSEYPHAIAVMSA 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AV+ A+G+LG+ S LG + D+ V GAGAY+CGEET+LL SLEGK+G R KPP P Sbjct: 236 AVEIARAAGVLGT-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+ PT +NNV S+A VP IL +GA +Y FG +RGT I+G+V + E Sbjct: 295 AHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVRHGGLFET 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T E++++ GG G + AV GG P + DY+ +G Sbjct: 355 AFGLTLGEIVDEIGGGTASGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 A ++V D + D++K F ESCG+CTPCR G+ + V + + GI ++ Sbjct: 413 HAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSIRGVEVADAIAAGIEPEKNRV 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ ++ ++CALG +P+ + +F Sbjct: 473 LLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504 >gi|148259851|ref|YP_001233978.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5] gi|326403221|ref|YP_004283302.1| putative formate dehydrogenase beta subunit [Acidiphilium multivorum AIU301] gi|146401532|gb|ABQ30059.1| formate dehydrogenase beta subunit [Acidiphilium cryptum JF-5] gi|325050082|dbj|BAJ80420.1| putative formate dehydrogenase beta subunit [Acidiphilium multivorum AIU301] Length = 516 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 146/391 (37%), Positives = 212/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D G + ++ L G + VK SGLRGRGGAGF TG+KW + + +DR Sbjct: 115 SLEDYRHHGGYKGLEAALSIGPAATVAAVKESGLRGRGGAGFPTGIKWETVARAPADR-K 173 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A+GA ++Y+R E+ ++ Sbjct: 174 YVVCNADEGDSGTFADRLIMEADPFMLIEGMTIAGVAVGATKGYVYIRSEYPLAIRMMRR 233 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ +G LG + +D D+ V GAGAY+CGEET+LLESLEGK+GQ R KPP PA Sbjct: 234 AIEIAERAGYLGKGINGSAHDFDLEVRVGAGAYVCGEETSLLESLEGKRGQVRPKPPLPA 293 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT +NN S+A VP IL GA Y+ G +RGT ++G+V + E + Sbjct: 294 IEGLFGRPTIINNTISLASVPFILAEGAKRYAEMGYGRSRGTMPVQLAGNVKHGGLFECA 353 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T EL+ GG G + AV GG P M DY+ + +G Sbjct: 354 FGVTLGELVNDIGGGTASGRP-VKAVQAGGPLGAYFPV-SMFDTPYDYEAFAKRDGLIGH 411 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ + F ESCG+CTPCR G+ + +R+ GI + + L Sbjct: 412 GGLVVFDDTADMAQMARFAMEFCALESCGKCTPCRIGSTRGVETFDRIRAGIEPETNLAL 471 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + ++ ++CALG +P+ I +F Sbjct: 472 VRDLCETMKFGSLCALGGFTPYPVLSAINHF 502 >gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 640 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 151/408 (37%), Positives = 228/408 (55%), Gaps = 5/408 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ D + RG + + K L + ++ EV + LRGRGG GF G KW + Sbjct: 146 INPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWR-TTRDA 204 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +D Y++VN DE +PG DR IM PH ++EG I +FAIGA +IYVR E+ Sbjct: 205 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 264 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E+L AA+ + GLLG N G+D + VH GAGA++ GE +AL+ ++EG+ G+PR K Sbjct: 265 ENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++GTK+F++ G VN Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSKGTKIFALVGKVNNTG 384 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE M T ++I K GG+R G + AV GG S C+P + + DYD L ++G Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 442 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ +I+MD T ++ F ESCG+C PCREG ++ ++ R+ +G Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 502 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++D L ++S + +CALG A P+ +K FR + I H Sbjct: 503 VDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550 >gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Acidovorax ebreus TPSY] gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax ebreus TPSY] Length = 661 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 150/418 (35%), Positives = 224/418 (53%), Gaps = 50/418 (11%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM------- 69 G +L+ +++GH D ++ ++ SGLRG GGAGF G KW + Sbjct: 233 GYALAAGLAQGHVPA---------DGVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAALA 283 Query: 70 -----------------PKVCSDRPH--YLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110 P+ +R + VN DE EPGT KDR + +PH +EG + Sbjct: 284 GRQAAPSEAAAPSAGSGPREAGERGSVALMAVNIDEGEPGTFKDRTYLERDPHRFLEGVL 343 Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAY 170 +A+ +G +IY+R E+ R LQAA+ E A I + GAGAY Sbjct: 344 VAAQVVGTAEVYIYLRDEYHGCRALLQAAIAELQADPPCALPR-------IELRRGAGAY 396 Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230 ICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT +N E++ V I+ +G W++ Sbjct: 397 ICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRDIVEKGPQWFAS 456 Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 FGR RG + FS+SG V P IT EL++++CGG+ G L A +PGG+S Sbjct: 457 FGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMAEG-HVLYAYLPGGASG 515 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 LPA ++ +D+D L+ G +G+AAVIV+ + A + F+ HESCGQCTP Sbjct: 516 GILPA-RLADVPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTP 574 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 CR GT ++M+ A + D L ++++ + +IC LG AA PI+ + K F Sbjct: 575 CRVGTAKAAQLMQ------APLWDEDTLDDLAQVMADASICGLGQAAPNPIRCIHKYF 626 >gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] Length = 640 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 151/408 (37%), Positives = 228/408 (55%), Gaps = 5/408 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ D + RG + + K L + ++ EV + LRGRGG GF G KW + Sbjct: 146 INPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWR-TTRDA 204 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +D Y++VN DE +PG DR IM PH ++EG I +FAIGA +IYVR E+ Sbjct: 205 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 264 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E+L AA+ + GLLG N G+D + VH GAGA++ GE +AL+ ++EG+ G+PR K Sbjct: 265 ENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++GTK+F++ G VN Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSKGTKIFALVGKVNNTG 384 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE M T ++I K GG+R G + AV GG S C+P + + DYD L ++G Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 442 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ +I+MD T ++ F ESCG+C PCREG ++ ++ R+ +G Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 502 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++D L ++S + +CALG A P+ +K FR + I H Sbjct: 503 VDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550 >gi|15966763|ref|NP_387116.1| putative NAD-dependent formate dehydrogenase beta subunit protein [Sinorhizobium meliloti 1021] gi|307301591|ref|ZP_07581350.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C] gi|15076035|emb|CAC47589.1| Putative NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium meliloti 1021] gi|306903289|gb|EFN33878.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C] Length = 518 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 216/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + +++ + I+ EV SGLRGRGGAGF TG+KW + + R Sbjct: 117 SLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLEARGPR-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A GA +IY R E+ + A Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGATKGYIYTRSEYPHAIAVMSA 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++ A+G+LG+ S LG + D+ V GAGAY+CGEET+LL SLEGK+G R KPP P Sbjct: 236 AIEIARAAGVLGA-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+ PT +NNV S+A VP IL +GA +Y FG +RGT I+G+V + E Sbjct: 295 AHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFET 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T E++++ GG + AV GG P + DY+ +G Sbjct: 355 AFGLTLGEIVDEIGGGT-ASARPVKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 A ++V D + D++K F ESCG+CTPCR G+ + V +R+ GI ++ + Sbjct: 413 HAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRE 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ ++ ++CALG +P+ + +F Sbjct: 473 LLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504 >gi|114571227|ref|YP_757907.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10] gi|114341689|gb|ABI66969.1| formate dehydrogenase beta subunit [Maricaulis maris MCS10] Length = 511 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 154/408 (37%), Positives = 216/408 (52%), Gaps = 5/408 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L DQ R+ GL L+ + G + + I+ VK SGLRGRGGAGF Sbjct: 98 LADQQRLIFARCGLDDPLDLAAYQAGGGLAGLSRARALAPGVIVEAVKTSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW K D YL NADE + GT DR +M +P TLIEG IA+ AIGA Sbjct: 158 PAGIKWETAAKATVD-ATYLCCNADEGDSGTYADRLLMEGDPFTLIEGMCIAARAIGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ +L+AA+ +GL S G DI V GAGAYICGEE+++L Sbjct: 217 GLVYLRSEYPDAIRTLKAAIRIWREAGLFQGLSD-GDGFDIEVRTGAGAYICGEESSMLN 275 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+ R KPP PA GL+G PT VNNV ++A VP IL G Y FG +RGT+ Sbjct: 276 SLEGKRGEVRAKPPIPAISGLFGQPTIVNNVLTLASVPWILEHGGEAYRDFGTGRSRGTQ 335 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 F ++G V +E + ++ LIE GG R G L AV GG L + Sbjct: 336 AFQLAGDVKQGALLELAFGVSLRTLIEDFGGGTRSGR-PLRAVQVGGPLGAYLADADLDV 394 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MDY+ L +G+ LG ++V + + D+ + F ESCG+CTPCR G Sbjct: 395 A-MDYEALAAIGAMLGHGGIVVFNDTVDMARQARFAMEFCAIESCGKCTPCRVGATRGRE 453 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++++ G A + L+ ++ + + ++CA+G P++ I+ F Sbjct: 454 TLDKIIAGEAVADNLALIEDLCELMTDGSLCAMGGLTPMPVRSAIQRF 501 >gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50] gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50] Length = 661 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 150/418 (35%), Positives = 237/418 (56%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +++++ ++ G + + K+L +I + S LRGRGG GF TG KW Sbjct: 182 VLKNCGHIDAENINEYLAVGGYQALRKVLFTMEPSEVIQVISDSNLRGRGGGGFPTGYKW 241 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + +++ Y+V N DE +PG DR +M +PH ++EG +IA++A+GA ++YVR Sbjct: 242 QQVARQ-AEKIRYVVCNGDEGDPGAFMDRSVMEGDPHKMLEGMIIAAYAVGAQEGYVYVR 300 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184 E+ L+ A+ + +G LG + LG D +H GAGA++CGE +AL S+EG Sbjct: 301 AEYPLAVSRLKTAIAQAEEAGFLGEDI-LGSDFSFHIHINRGAGAFVCGEGSALTASIEG 359 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 ++G PR KPP GL+ PT +NNVE+ A V I+ GA WY G E + GTK F++ Sbjct: 360 QRGMPRTKPPRTVEQGLFAKPTVLNNVETYANVSMIILNGADWYKSIGPEKSPGTKAFAL 419 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V +E M E++ GG++ L AV GG S CL + + +D Sbjct: 420 TGSVKNTGLIEVPMGTKLREIVYDIGGGLKDDIP-LKAVQIGGPSGGCLVTDDLEVS-LD 477 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D LK G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT M+ ++ER Sbjct: 478 FDSLKSKGAMIGSGGLVVMDENTCLVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 537 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQYHR 421 +V G ++DLL E+ + I +C LG +AA P+ +KNFR IE +D+ R Sbjct: 538 IVAGNGTLEDLDLLEELGQAITDTALCGLGKSAALPVLSTLKNFRQEYIEHVVDKRCR 595 >gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] Length = 491 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 148/406 (36%), Positives = 230/406 (56%), Gaps = 5/406 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q RI T G + +++ D ++ ++ + K+L +++ +K SGLRGRGG GF TG Sbjct: 10 QLRIATRNCGFIDPENIDDYIALRGYEGLAKVLTMSPADVVDLIKRSGLRGRGGGGFPTG 69 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW +D+ Y+V NADE +PG DR ++ +PH+++E I +AIGA + Sbjct: 70 VKWGIALANAADQ-KYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATVGTV 128 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + L+ A+D+ GLLG+N G+D DI + +GAGA++CGEETAL+ S+ Sbjct: 129 YIRAEYPLAIKRLKKAIDDARDYGLLGTNIFGSGFDFDIEIKYGAGAFVCGEETALIRSM 188 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++G+P KPPFPA G + PT VNNVE+ A VP I+ GA W++G G +GTK+F Sbjct: 189 EGQRGEPVSKPPFPAQSGYWEKPTIVNNVETFANVPAIILNGADWFAGIGTATTKGTKVF 248 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G + +E M IT E+I GG G AV GG S L + AI Sbjct: 249 ALAGKIQNVGLIEVPMGITLREVIFDIGGGCPDG-KAFKAVQTGGPSGGALSYKDLDVAI 307 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + ++ Sbjct: 308 -DYESLIARKSMMGSGGMVVMDEDDCMVSIAKFFLDFTMDETCGKCTPCRVGSKRLYEIL 366 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ KG + ++D L +S+ I+ +C LG PI + F Sbjct: 367 DKITKGKGTQADLDRLKSLSEVIKDTALCGLGQTMPNPILSTMDTF 412 >gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans] Length = 617 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 232/409 (56%), Gaps = 10/409 (2%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ D ++ + + K+L + +I+EV SGLRGRGG GF TG+KW+ K Sbjct: 150 SIDDYIAMDGYAALRKVLSSMTPEQVIDEVTKSGLRGRGGGGFPTGVKWNLTRKAPGPE- 208 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESL 136 Y+V NADE +PG DR ++ +PH++IEG ++A+FA+G A +IY R E+ + L Sbjct: 209 KYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMILAAFAVGHARKGYIYCRAEYPLAIKRL 268 Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q A+++ LG N S L +D++I GAGAY+CGEETALL SL G++G P KP Sbjct: 269 QKAINDARERNFLGDNILGSDLSFDLEI--KEGAGAYVCGEETALLASLMGERGMPWPKP 326 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G P+ +NNVE++A + I+ G WY+ +G E +GTK F+++G + Sbjct: 327 PFPAQKGVWGKPSVINNVETLANIGHIILGGGEWYASYGSEKTKGTKTFALTGSIKNTGL 386 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 +E E++ GG+ A GG S C+P + + D++ + G+ Sbjct: 387 IEVPAGTPLREIVFSIGGGMVEKKIPFKAAQLGGPSGGCIPTSGLDTPV-DFENVVSAGA 445 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ ++VMD + I+ F + ESCG+CTPCR G+ M+ ++ R+ +G Q+ Sbjct: 446 IMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSKIMLDILTRITEGKGQEG 505 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++D L +S I+ ++C LG AA P+ I+ FR E I + RC Sbjct: 506 DLDELVRLSMYIKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI-RDKRC 553 >gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] Length = 609 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 212/387 (54%), Gaps = 21/387 (5%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTC 92 ++G + E+ SGLRGRGGAGF T +KW F CS+ Y+V NADE EPGT Sbjct: 189 FKRGIKETLKEIDYSGLRGRGGAGFKTAIKWQF----CSEEQQTERYVVCNADEGEPGTF 244 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 KDR ++ + EG + + IGA F+Y+RGE++ + LQ+ +++ + LLG+N Sbjct: 245 KDRVLLNAYADQVFEGMTVCAAIIGAKQGFLYLRGEYLHLYDKLQSILEQRRQNSLLGNN 304 Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 G D DI + GAGAYICGEE+AL+ESLEGK G PR +PP+P G G PT VNNV Sbjct: 305 ILDTGLDFDIEICLGAGAYICGEESALIESLEGKAGIPRNRPPYPVTQGYLGKPTVVNNV 364 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E+ I G+ W++ G E ++GTK+ SISG P E T ++ CG Sbjct: 365 ETFLAAAGIAVNGSDWFANIGTEKSKGTKILSISGDCARPGIYEYPFGTTIQTIL-NDCG 423 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 D++L V GG S + + Q + ++ L GS I+ + S +I+ Sbjct: 424 A-----DDVLGVQVGGPSGTFI-SNQEFDRKLAFEDLATGGS------FIIFNSSRNILD 471 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 + + F+ HESCG CTPCR GT + + ++++V+G ++ L E+ + ++ + C Sbjct: 472 MVHNFAHFFAHESCGFCTPCRVGTSLLQKQIDKIVEGHGSAGDVVALEELCQLVKNYSHC 531 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LG AA PI ++ + L + R+ + Sbjct: 532 GLGQTAANPILTTLERYPDLYQSRLKE 558 >gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] Length = 640 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 151/408 (37%), Positives = 227/408 (55%), Gaps = 5/408 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +++ D + RG + + K L + ++ EV + LRGRGG GF G KW Sbjct: 146 INPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWRTTHDA- 204 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +D Y++VN DE +PG DR IM PH ++EG I +FAIGA +IYVR E+ Sbjct: 205 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 264 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E+L AA+ + GLLG N G+D + VH GAGA++ GE +AL+ ++EG+ G+PR K Sbjct: 265 ENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++GTK+F++ G VN Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSKGTKIFALVGKVNNTG 384 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 VE M T ++I K GG+R G + AV GG S C+P + + DYD L ++G Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 442 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+ +I+MD T ++ F ESCG+C PCREG ++ ++ R+ +G Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 502 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++D L ++S + +CALG A P+ +K FR + I H Sbjct: 503 VDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550 >gi|160936107|ref|ZP_02083480.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC BAA-613] gi|158440917|gb|EDP18641.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC BAA-613] Length = 1033 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 157/409 (38%), Positives = 237/409 (57%), Gaps = 5/409 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKV 72 ++ SL +SR + + + L E ++ E+KA+GLRGRGGAGF TG+KW M V Sbjct: 146 MEYASLEAYISRDGYGALARALSEMTPAQVVEEMKAAGLRGRGGAGFPTGVKWEAGMKAV 205 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 D ++V NADE +PG DR I+ +PH++IEG ++ +AIGA ++YVR E+ Sbjct: 206 SEDGRKFMVCNADEGDPGAFMDRSILEGDPHSIIEGMMLGGYAIGASKGYVYVRAEYPIA 265 Query: 133 RESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 E L A+D+ +G+LG N G+ D+ + GAGA++CGEET+LL S+EGK+G+PR Sbjct: 266 VERLGNAIDQARKAGILGENVMGSGFSFDLEIRIGAGAFVCGEETSLLASIEGKRGEPRQ 325 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFP GL+ PT +NNVE++A I+ G+ WY GFG E + GTK+F+++G + Sbjct: 326 KPPFPFEKGLFESPTIINNVETLANAAPIILNGSQWYRGFGTEKSAGTKVFALAGDIVNA 385 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 +E M ++I K GG G A+ GG S CL + + DY+ L + Sbjct: 386 GIIEVPMGTILGDIIYKI-GGGIIGGKKFKAIQSGGPSGGCLTKTHLNTPV-DYESLSSL 443 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ +IVM+ T ++ F ESCG+C PCR GT M+ ++ER+ +G Q Sbjct: 444 GAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTRRMLEILERITEGKGQ 503 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++LL E++ I+ +C LG A P+ +K FR E I + H Sbjct: 504 PEDLELLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRSEYEAHIYEKH 552 >gi|146305428|ref|YP_001185893.1| NADH dehydrogenase (quinone) [Pseudomonas mendocina ymp] gi|145573629|gb|ABP83161.1| formate dehydrogenase beta subunit [Pseudomonas mendocina ymp] Length = 523 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 149/412 (36%), Positives = 220/412 (53%), Gaps = 8/412 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL D ++ + + + L + I+ EV SGLRGRGGA F Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + C Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWRTVLG-CQAEQKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L + A+G LG + G + + GAGAYICGEETALL Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S+A VP IL +G ++Y +G + GT Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E++ IT EL+ ++ GG G + AV GG LP Q Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGR-PIRAVQVGGPLGAYLPESQFD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG ++V D + D+ F ESCG+CTPCR G+ Sbjct: 399 -TPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457 Query: 360 RVMERLVKGIA---QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ +++ + Q I+LL + + G ++CALG +P+ I +F Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVLSAINHF 509 >gi|332529346|ref|ZP_08405307.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624] gi|332041144|gb|EGI77509.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624] Length = 526 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 146/415 (35%), Positives = 230/415 (55%), Gaps = 11/415 (2%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ SL D + + + K LE ++ +V SGLRGRGGA F Sbjct: 101 LKNQERLTFARMGITDPVSLEDYQAHQGYAGLRKALEIKPTDVVQQVLDSGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + +D+ Y+V NADE + GT DR M +P+ LIEG IA+ A GA Sbjct: 161 PAGIKWKTVAAAQADQ-KYVVCNADEGDSGTFSDRMTMEGDPYMLIEGMTIAAMATGATR 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ ++L A+ +G LG N G + V GAG+Y+CGEETA+L Sbjct: 220 GYIYVRSEYPHAIDNLNEAIARATKAGFLGDNVLGSGRAFHLEVRKGAGSYVCGEETAML 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV + A VP IL RGA++Y+ +G ++GT Sbjct: 280 ESIEGKRGIVRAKPPIPALQGLFGKPTVINNVITYASVPIILARGAAFYANYGMGRSKGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T +L+ ++ GG G + A+ GG +P Q Sbjct: 340 LPIQLAGNIKHGGLVEKAFGVTLRQLVFEYGGGTASGRP-VKAIQVGGPLGAYVPE-QHW 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+G +G+ +G ++V D ++D+ K F ESCG+CTPCR G+ + Sbjct: 398 DLPMDYEGWTAVGATVGHGGIVVHDDTSDMRKLARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVKGIAQ------KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++RL + Q +++ LL ++ + ++CA+G +P+ + ++ Sbjct: 458 EVIDRLAEADRQGKPEVKAQQVKLLRDLCDTMVNGSLCAMGGMTPFPVLSALNHY 512 >gi|239905977|ref|YP_002952716.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] gi|239795841|dbj|BAH74830.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] Length = 454 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 143/423 (33%), Positives = 235/423 (55%), Gaps = 14/423 (3%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + + ++ + ++ G ++ + + ++ ++ V + LRGRGGAGF G KW Sbjct: 9 LFKNRHLGRPATIDEYLAGGGYEALRATIGQRTPAEVLQLVLDADLRGRGGAGFPAGRKW 68 Query: 67 SFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 +P +D Y+V+N DE EPGT KDR ++ +PH +IEG ++ ++A+GA + Sbjct: 69 QGIP---ADHVGTRYVVINTDEMEPGTFKDRILVNVDPHLVIEGIILCAYAVGACEGVFF 125 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESL 182 +R + + + ++ G LG N LG D D+ VH AG YICGE +A ++++ Sbjct: 126 IRPSYEGDAKLIEQETQVARERGYLGKNI-LGTDFCFDVHVHRSAGRYICGEASAQIKAI 184 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKL 241 G + PR P + GL+ CPT VNN+E++A +P I+R G +W+ R E+ GTKL Sbjct: 185 SGLRPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVRNGPAWFKSLARSESGSGTKL 244 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 +S+SG V P E + +T ++I H GG+ G VIPGG+S P LP + Sbjct: 245 YSVSGQVARPGCYELPIGVTIRDIIFTHAGGMAPG-KTFKTVIPGGASTPYLPEALL-DL 302 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MD+D +++ G GTA+++V D+ T ++ A L F+ ESCG CTPCREG ++ + Sbjct: 303 EMDFDPMRKAGQRFGTASLMVFDQDTCLVGATLSLMEFFARESCGWCTPCREGIPYVREL 362 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G + + +L E+ ++ CA AA P++GL+ +F ++ I + R Sbjct: 363 LRRIEGGEGTEEHVGMLQEMLPVLD-LAYCAFAPGAAEPLRGLLTHFMDEVQAHITE-KR 420 Query: 422 CNF 424 C F Sbjct: 421 CPF 423 >gi|91784827|ref|YP_560033.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia xenovorans LB400] gi|91688781|gb|ABE31981.1| formate dehydrogenase beta subunit [Burkholderia xenovorans LB400] Length = 521 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 227/411 (55%), Gaps = 8/411 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTV-RGAKAAQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEETA 177 IYVR E+ +L+AA+ + A+G LG +S LG + ++ V GAGAY+CGEETA Sbjct: 217 GHIYVRSEYPHSIATLEAAIAKARAAGWLG-DSVLGSTEHRFELFVAKGAGAYVCGEETA 275 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGK+G R KPP PA VGL+G PT +NNV ++A VP I RGA++Y FG +R Sbjct: 276 LLESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSR 335 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT F ++G+V VE + +T EL+ ++ GG G AV GG LP Q Sbjct: 336 GTLPFQLAGNVKQGGLVELAFGVTLRELLYEYGGGTASGRPA-RAVQVGGPLGTYLPESQ 394 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ Sbjct: 395 WD-IPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTR 453 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 454 GVEVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 504 >gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] Length = 780 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 155/422 (36%), Positives = 245/422 (58%), Gaps = 12/422 (2%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 L+ Q R+ T YGL + + ++RG ++ + K I K R II+ + SGLRGRGG Sbjct: 292 FLSGQKRVSTEGYGLMSPLDIDEYIARGGFEALKKAITSKSRQEIIDTILRSGLRGRGGG 351 Query: 59 GFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG KW + SD+P Y++ N DE +PG DR ++ P +IEG +IA +A+G Sbjct: 352 GFLTGRKWELV--AASDQPEKYVICNGDEGDPGAFMDRILLESYPLRVIEGMIIAGYAVG 409 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGE 174 A Y+R E+ + + A++ C +G + S +++ I GAGA++CGE Sbjct: 410 AKEGIFYIRAEYPQAVIRTRKAIELCRERNWVGDHIFGSDFSFEISIF--EGAGAFVCGE 467 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETAL+ S+EG++G PR +PP+PA GL PT +NNVE+++ V I+ GA Y G E Sbjct: 468 ETALIASIEGERGFPRQRPPYPAVEGLNKRPTLINNVETLSQVSYIVNHGADEYRKIGTE 527 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 N++GTK+F+++G V + +E M T +++IE GG+ GG + L AV GG S C+P Sbjct: 528 NSKGTKVFALAGKVRHGGLIEVPMGTTLNQIIEDIGGGVEGG-EKLRAVQIGGPSGGCIP 586 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 A + A +D+D L +MG+ +G+ ++V+ S ++ F +ESCG+CT CR G Sbjct: 587 A-HLCDAKVDFDALIQMGAIMGSGGMVVLSESNCMVDVARYFLAFTCNESCGKCTFCRVG 645 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M+ ++++L G A+ +ID L E++ +++ +C LG A P+ +K FR EE Sbjct: 646 IRRMLDILDKLCTGKAEMADIDKLEELALSVKKAALCGLGKTAPNPVLATLKYFREEYEE 705 Query: 415 RI 416 + Sbjct: 706 HV 707 >gi|23016780|ref|ZP_00056532.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 514 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 213/372 (57%), Gaps = 23/372 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E RD ++ E++ +GLRG GGAGF T KW + P +VVNADE EPGT KDR Sbjct: 161 ELPRDEVLAELERAGLRGMGGAGFPTARKWRAV--AARPGPRLVVVNADEGEPGTFKDRW 218 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ ++EG +IA++A+ A ++Y+R E+ + L + L GS Sbjct: 219 FLQTNAARVLEGALIAAWAVEADEVYLYLRDEYADLHKLLTVLI-----RALPGS----- 268 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V + + GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A VGL+G PT VNNVE++ Sbjct: 269 --VPVHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLFGRPTVVNNVETLYW 326 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V IL GA ++ GR +RG + +S+SG V P IT ELIE+ CGG+ G Sbjct: 327 VSRILAEGAELFTDEGRNGHRGLRTYSVSGRVRLPGVKIAPNGITITELIEEFCGGMEDG 386 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A +PGG+S LPA + + ++E G +G+AAV+V + D+ L Sbjct: 387 -HQLRAYLPGGASGGFLPAHVT--PPLAFGAIEEHGGFIGSAAVVVFSQEDDLRAHALNL 443 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + F+ HESCGQCTPCR GT ++ + + + DLL ++++ + +IC LG A Sbjct: 444 ARFFAHESCGQCTPCRVGTAKAADLL------ASPRWDEDLLNDLAQVMRDASICGLGQA 497 Query: 397 AAWPIQGLIKNF 408 A Q L+++F Sbjct: 498 APNVWQSLLRHF 509 >gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] Length = 595 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/404 (37%), Positives = 232/404 (57%), Gaps = 5/404 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +++ + ++R + ++K L E + II E+K +GLRGRGGAGF T MKW Sbjct: 117 VLRNCGFIDPENIDEYIAREGYQGLEKALFEMTGEEIIEELKTAGLRGRGGAGFPTWMKW 176 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 +F +V +D Y+V NADE +PG DR +PH+++E I IGA+ FIY+R Sbjct: 177 NFSRQVQNDT-KYVVCNADEGDPGAYMDRSTCEGDPHSVLEAMTICGKTIGANQGFIYIR 235 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ L+ A+ + GLLG N G+D DI + GAGA++CGEETALL+S+EGK Sbjct: 236 AEYPLAIHRLEIAMKQAREYGLLGKNILGSGFDFDIEIRLGAGAFVCGEETALLQSIEGK 295 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G P+ +PPFPA GL+G PT +NNVE+ A VP IL +G +W++ G +++GTK+F+++ Sbjct: 296 RGMPQPRPPFPAVKGLWGKPTVINNVETWANVPVILTKGGNWFNKIGTADSKGTKVFALT 355 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + VE M T E+I GGI AV GG S + A + I D+ Sbjct: 356 GKIRNSGLVEVPMGTTLREIIYDIGGGIAHD-KKFKAVQTGGPSGGVITAENLDTPI-DF 413 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 L +GS +G+ +IVMD I+ F ESCG+C PCR G + ++E++ Sbjct: 414 GSLIRIGSMMGSGGMIVMDEDDCIVDVAKFYLNFSVDESCGKCAPCRIGGKSLCNILEKI 473 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 G +++D L + + ++ ++CALG P+ IK+F+ Sbjct: 474 TAGNGTLKDLDTLANIGEAMKKGSLCALGQTTPNPVLSSIKHFK 517 >gi|56751243|ref|YP_171944.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301] gi|56686202|dbj|BAD79424.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301] Length = 534 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 219/361 (60%), Gaps = 13/361 (3%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + TG+KW+ + K+ SDR ++V N DE +PG DR ++ +PH +IEG IA++A+GA+ Sbjct: 173 YPTGLKWATVAKMPSDR-KFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGAN 231 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176 ++YVR E+ L A+ + GLLG+ +S+ +D+++ + GAGA++CGEET Sbjct: 232 FGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRI--GAGAFVCGEET 289 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S++G++G PR++PP+PA GL+G PT +NNVE+ A + I+ + A W++ G + Sbjct: 290 ALIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQSADWFAAIGTPTS 349 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G + +E M I +++ G+ + AV GG S C+P Sbjct: 350 KGTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLA 405 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGT 355 Q+ + DYD L ++GS +G+ ++VMD +TD++ AI R + F + ESCG+C PCR GT Sbjct: 406 QLDTPV-DYDSLIQLGSMMGSGGMVVMDENTDMV-AIARFYMEFCRSESCGKCIPCRAGT 463 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + ++ +L G ++ L ++ ++ ++C LG +A PI ++ FR E R Sbjct: 464 VQLHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESR 523 Query: 416 I 416 + Sbjct: 524 L 524 >gi|254284253|ref|ZP_04959221.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B] gi|219680456|gb|EED36805.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B] Length = 514 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 205/367 (55%), Gaps = 4/367 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++EVK SGLRGRGGA F G+KW + +R Y+V NADE + GT DR +M +P Sbjct: 141 IVDEVKESGLRGRGGAAFPAGIKWQTVLDAVGNR-KYIVCNADEGDSGTFADRLLMEADP 199 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161 LIEG IA+ A+GA +IY+R E+ + L A++ +G LG + G + Sbjct: 200 FQLIEGMTIAALAVGATQGYIYLRSEYPLAHQILNEAIERAEQAGYLGDDLLGSGQAFHL 259 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V GAGAYICGEET+LL SLEGK+G R KPP PA GL+G PT VNNV ++A V T+L Sbjct: 260 EVRLGAGAYICGEETSLLNSLEGKRGIVRAKPPLPAIEGLFGKPTVVNNVLTLAAVTTVL 319 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 +G+ +Y FG +RGT F ++G++ VE + T +L+ + GG L Sbjct: 320 AKGSDFYQDFGVGRSRGTLAFQLAGNIERGGLVELAFGTTLRDLVSEF-GGDSASGRPLR 378 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A+ GG LP +DY+ E+G +G V+V D S ++ F Sbjct: 379 AIQVGGPLGAYLPESSWD-TPLDYEAFAEIGGMIGHGGVVVFDESINMSDQARFAMDFCA 437 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+CTPCR G + V++R+ +G ++ +LL ++ +E ++CA+G +P+ Sbjct: 438 EESCGKCTPCRVGAVRGVEVIDRIREGNEPEKNRELLLDLCDTMESASLCAMGGMTPFPV 497 Query: 402 QGLIKNF 408 + + F Sbjct: 498 RSALHYF 504 >gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 594 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 158/421 (37%), Positives = 247/421 (58%), Gaps = 14/421 (3%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGF 60 + Q+R+ N + + + ++R ++ + K+L + ++ E+K SGLRGRGG GF Sbjct: 110 SKQERVALGNCGYIDADKIEEYIARDGYEALGKVLTSMTPEDVVEEMKTSGLRGRGGGGF 169 Query: 61 STGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 TG+KWSF C+ P Y++ NADE +PG DR I+ +PH++IEG +I ++A+G Sbjct: 170 PTGLKWSF----CAKSPGPKKYVICNADEGDPGAFMDRSILEGDPHSIIEGMMIGAYAMG 225 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEE 175 A +IY R E+ + L+ A+D+ GLLG N LG D +H GAGA++CGEE Sbjct: 226 ADEGYIYCRAEYPLAIKRLKRAIDQAEEYGLLGENV-LGTDFSFSLHVKEGAGAFVCGEE 284 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A VP+I+RRG +W++ G E Sbjct: 285 TALMGSIEGRRGMPRPRPPFPAVSGLWGKPTNINNVETWANVPSIIRRGGAWFASMGTEK 344 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+F+++G V + VE M IT E+I GGI G AV GG S CL Sbjct: 345 SKGTKVFALTGKVKHTGLVEVPMGITLREIIFDIGGGILGD-KKFKAVQIGGPSGGCLTE 403 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + + Y+ L + G+ +G+ ++VMD ++ F + ESCG+C PCREGT Sbjct: 404 EHLDLPV-SYEDLAKAGAIMGSGGMVVMDEDNCMVDVAKFFLEFTQRESCGKCVPCREGT 462 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 M+ +++++ G ++ L E++ ++ ++C LG A P+ ++ FR E Sbjct: 463 KQMLLLLKKICDGEGTMEDLAQLEELAHMVKDMSLCGLGQTAPNPVLTTLRYFRHEYEAH 522 Query: 416 I 416 I Sbjct: 523 I 523 >gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] Length = 618 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 150/383 (39%), Positives = 217/383 (56%), Gaps = 5/383 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E II E+K +GLRGRGG GF TG+KW+ K DR +++ NADE +PG D Sbjct: 169 LFEMEPQQIIQEIKGAGLRGRGGGGFPTGIKWATCAKHDGDR--FVICNADEGDPGAYMD 226 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R ++ PH++IEG +IA+ A+ +H F+YVR E+ ++L A+ GLLG N Sbjct: 227 RSLLEGNPHSIIEGMLIAAVAMQSHNGFVYVRHEYPLAVKNLNIALKSAREIGLLGKNIL 286 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D DI V G G+++CGE TAL+ SLEGK G+PR K G P+++NNVE+ Sbjct: 287 GSGFDFDIKVSRGGGSFVCGESTALMASLEGKPGRPRAKYVHTVEKGFRESPSSLNNVET 346 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A VP I+ GA WY+ G E ++GTK+FS+ G+V VE M +I GGI Sbjct: 347 YANVPHIINNGAEWYASMGTEGSKGTKIFSLVGNVVNTGLVEVPMGTNLRTIIYDIGGGI 406 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 AV GG S C+P Q +D+D L ++GS +G+ +IVMD+ T ++ Sbjct: 407 P-KKKKFKAVQSGGPSGGCIPE-QFLDVPVDFDELVKIGSMMGSGGMIVMDQDTCMVDVA 464 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F K ESCGQC PCREG M+ V+ R+ G ++ +I+LL E+ ++ ++C L Sbjct: 465 RYFLDFLKEESCGQCNPCREGIKQMLDVLTRICAGEGKEGDIELLEELGAMVQKFSLCGL 524 Query: 394 GDAAAWPIQGLIKNFRPLIEERI 416 G ++ P+ + FR E I Sbjct: 525 GTSSPNPVLTTLMYFRHEYEAHI 547 >gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] Length = 488 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 219/384 (57%), Gaps = 4/384 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 RG+ I +I ++K SGLRGRGG GF TG+KW+F +D+ Y+V NAD Sbjct: 29 RGYEALASAITNGTPAGVIEQMKKSGLRGRGGGGFPTGVKWAFAAANQADQ-KYVVCNAD 87 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR ++ +PH+++E I +AIGA +Y+R E+ + L ++++ Sbjct: 88 EGDPGAFMDRALLEGDPHSIVEAMAICGYAIGASIGVVYIRAEYPLAIKRLIKSIEDARD 147 Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GLLG N G++ DI + +GAGA++CGEETAL+ S+EG +G+P KPPFPA+ G +G Sbjct: 148 YGLLGRNILGTGFNFDIELKYGAGAFVCGEETALIRSMEGSRGEPYTKPPFPASAGYWGK 207 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVE++A +P IL +GA W+S G EN++GTK+F+++G + +E M IT E Sbjct: 208 PTIVNNVETLANIPPILVKGADWFSSIGTENSKGTKVFALAGKITNVGLIEVPMGITLGE 267 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 +I + GG G AV GG S L + + I DYD L GS +G+ +IVMD Sbjct: 268 IIFEIGGGCPNG-KQFKAVQTGGPSGGALTSRDIDVPI-DYDNLIARGSMMGSGGMIVMD 325 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 ++ F E+CG+CTPCR G+ + ++ R+ +G +++ L + Sbjct: 326 EDNCMVDVAKFFLDFTMDETCGKCTPCRIGSKRLHEILCRITQGEGTLEDMENLQCLGAT 385 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 I+ +C G P+ I+ F Sbjct: 386 IKDTALCGFGQTMPNPVLSTIRTF 409 >gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] Length = 721 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 146/414 (35%), Positives = 222/414 (53%), Gaps = 9/414 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G W + + I+ +V SGLRGRGGA F Sbjct: 295 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 354 Query: 61 STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 G+KW + S Y+ NADE + GT DR +M +P LIEG IA A+G Sbjct: 355 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 414 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ L A+ A+G LG+N + G + V GAG+Y+CGEET Sbjct: 415 ATQGYIYVRSEYPHAIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 474 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 A+LES+EGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y G+G + Sbjct: 475 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 534 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 RGT F ++G++ VE++ +T EL+E GG G + I G + A Sbjct: 535 RGTLPFQLAGNIARGGLVEKAFGLTLRELVEDFGGGTASGRP--IKAIQVGGPLGSYVAP 592 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ G+ +G ++V D S D+ + F ESCG+CTPCR G+ Sbjct: 593 ENWDDPLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 652 Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V++R+ + G + LL + ++ ++CA+G +P++ ++++ Sbjct: 653 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHY 706 >gi|150388475|ref|YP_001318524.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149948337|gb|ABR46865.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 547 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/372 (38%), Positives = 221/372 (59%), Gaps = 8/372 (2%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + +I +KASGLRGRGG GF TG KW +D +++ NADE +PG DR I+ Sbjct: 153 EAVIEVIKASGLRGRGGGGFPTGRKWELTHGNKNDL-KFIICNADEGDPGAFMDRSILEG 211 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGY 157 +PH+++E IA +AIGA +IY+R E+ + L A+++ GLLG +S + Sbjct: 212 DPHSILEAMAIAGYAIGAEKGYIYIRAEYPLAIQRLNIAIEQAREYGLLGERIFDSDFNF 271 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D+++ +GAGA++CGEETALL S+EG +G+P KPPFPA GL+ PT VNNVE++A + Sbjct: 272 DIEL--KYGAGAFVCGEETALLNSIEGGRGEPNAKPPFPAESGLWDKPTCVNNVETLANI 329 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 P IL +G+ W+S G ++++GTK+F+++G VN VE M IT E+I GGIR Sbjct: 330 PQILLKGSEWFSRIGTKDSKGTKVFALAGKVNNVGLVEVPMGITLREIIFDIGGGIRDN- 388 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 AV GG S C+P + + DY L+E+GS +G+ +IVMD ++ Sbjct: 389 KKFKAVQTGGPSGGCIPEAYLDTHV-DYQTLQEVGSIMGSGGMIVMDEDDCMVNITKFYL 447 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F + ESCG+CTPCR G + ++ R+ G + ++ L + + I+ ++C LG ++ Sbjct: 448 EFAEDESCGKCTPCRIGNKRLHEILIRITNGKGTREDLHNLKSLGEIIKDSSLCGLGQSS 507 Query: 398 AWPIQGLIKNFR 409 PI ++ F Sbjct: 508 PNPILSTLEYFE 519 >gi|114328597|ref|YP_745754.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) [Granulibacter bethesdensis CGDNIH1] gi|114316771|gb|ABI62831.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) [Granulibacter bethesdensis CGDNIH1] Length = 518 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +SLSD + G + + + L + ++ +V SGLRGRGGAGF TG+KW + + + Sbjct: 116 RSLSDYQAHGGYKGLARALTMTPEAVVEDVTKSGLRGRGGAGFPTGIKWKTVLGAKAAQ- 174 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE + GT DR IM +P LIEG IA +A+GA ++Y R E+ +++ Sbjct: 175 KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGYAVGATKGYVYTRSEYPHAIDAMN 234 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ +G+LG N G D+ V GAGAY+CGEETALL+SLEGK+G R KPP P Sbjct: 235 RAIIAAREAGMLGDNILGSGISFDMEVRQGAGAYVCGEETALLDSLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV S+ VP I+ G Y+ FG +RGT I+G+V E Sbjct: 295 ALSGLFGQPTVINNVISLTSVPWIMTHGGEAYAAFGLGRSRGTMPIQIAGNVKQGGLFEI 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT EL+++ GG G + AV GG P + DY+ +G Sbjct: 355 AFGITLGELVDEIGGGTLTG-RPVRAVQIGGPLGAYFPRA-LFDTPFDYEAFAAKDGLIG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D + D+ F ESCG+CTPCR G+ + +++L++G ++ Sbjct: 413 HGGIVIFDDTVDMAHMARFAMEFCAEESCGKCTPCRIGSTRGVETLDKLLRGEQHEKNYA 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++ ++ ++CALG +P+ + +F Sbjct: 473 VLEDLCNTMKFGSLCALGGFTPYPVVSAMTHF 504 >gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 567 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 150/377 (39%), Positives = 216/377 (57%), Gaps = 20/377 (5%) Query: 34 KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 K L +G DW + ++ ASGLRG GGAGF +G KW F+ +D P YL VN DE EPGT Sbjct: 205 KELREGGDWEAVQEQILASGLRGLGGAGFPSGKKWGFV--RVNDGPRYLAVNGDEGEPGT 262 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR + PH +EG +IA++A+ A FIY+R E+ E L+ + +G++ Sbjct: 263 FKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLEILRREIAALEQAGIV-- 320 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + GY I + GAGAYICGEE+A++ES+EGKKG PR +PPF A VG++G PT V+NV Sbjct: 321 --EKGY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPFVAQVGVFGRPTLVHNV 375 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++ V I R G S + +G + +S+SG V T ++IE G Sbjct: 376 ETLYWVSRICREGPEILSSVEKNGRKGLRCYSVSGRVAKSGVYLLPAGSTILDVIEA-AG 434 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+ G A PGG S LPA M +D+D L+ G+ +G+AAV+V+ Sbjct: 435 GMALG-HAFKAYQPGGPSSGLLPA-SMDDIPLDFDTLQPHGTFIGSAAVVVLSEQDTARD 492 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 A + F++ ESCGQCTPCR G +++M+ A+K + DLL ++ + + +IC Sbjct: 493 AALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------AEKWDTDLLEDLCQVMGDASIC 546 Query: 392 ALGDAAAWPIQGLIKNF 408 LG AA PI+ ++K+F Sbjct: 547 GLGQAAPNPIRLVMKHF 563 >gi|163760124|ref|ZP_02167207.1| putative nad-dependent formate dehydrogenase beta subunit protein [Hoeflea phototrophica DFL-43] gi|162282523|gb|EDQ32811.1| putative nad-dependent formate dehydrogenase beta subunit protein [Hoeflea phototrophica DFL-43] Length = 518 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 218/393 (55%), Gaps = 8/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D ++G + + + I+ +V SGLRGRGGAGF TG+KW + + + Sbjct: 117 SLEDYRAQGGLAGLTNAVAMPPEAIVAQVTESGLRGRGGAGFPTGIKWKTVLEADGAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P +IEG VIA A GA ++Y+R E+ + Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVVIEGMVIAGIATGATKGYVYLRSEYPHAINVMNR 235 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV+ + +LG++ S G+D++I V GAGAY+CGEETALLESLEG++G R KPP Sbjct: 236 AVEIARENNILGTSVLGSPHGFDMEIRV--GAGAYVCGEETALLESLEGRRGVVRAKPPL 293 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ G G PT VNNV S+A VP I+ +GA +Y FG +RGT I+G+V + E Sbjct: 294 PAHKGFLGRPTVVNNVISLASVPIIMDKGADFYRDFGMGRSRGTIPVQIAGNVKHGGLFE 353 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +T ELI+ GG G + AV GG P ++ DY+ + Sbjct: 354 AAFGMTLGELIDDIGGGTATGRP-VKAVQVGGPLGAYFPR-ELFDTPFDYEAFAARDGLI 411 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G A ++V D + D++K F ESCG+CTPCR G+ + V++ + GI +++ Sbjct: 412 GHAGIVVFDDTADMLKQARFAFEFCAVESCGKCTPCRIGSTRGVEVIDNIRDGIEPDKQV 471 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L+ ++ ++ ++CALG +P+ +F Sbjct: 472 ALMSDLCNTMKFGSLCALGGFTPYPVMSAFTHF 504 >gi|330815877|ref|YP_004359582.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3] gi|327368270|gb|AEA59626.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3] Length = 524 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 144/409 (35%), Positives = 221/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + + L E+ SGLRGRGGA F Sbjct: 102 LKKQQRLTFARIGITDPLSIDDYLAHGGLEGLRRALTLDGAAACEELIESGLRGRGGAAF 161 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 162 PAGIKWRTVRQAQATQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGVVTGATQ 220 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A++ A+G LG++ G ++ V GAGAY+CGEETALL Sbjct: 221 GHIYVRSEYPHAIAALNQAIERARAAGWLGADVLGSGRAFELFVAKGAGAYVCGEETALL 280 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA +Y +G +RGT Sbjct: 281 ESLEGKRGVVRAKPPLPALQGLHGQPTVINNVITLATAPIIFARGAQFYRDYGMGRSRGT 340 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL+ + GG G A + GG LP Q Sbjct: 341 LPFQLAGNIRQGGLVELAFGVTLRELLFEFGGGTASGRPARAAQV-GGPLGTYLPDSQWD 399 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F HESCG+CTPCR G+ + Sbjct: 400 -IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMQFCVHESCGKCTPCRIGSTRGV 458 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + R+ G +R++ LL E+ + ++CA+G +P+ + +F Sbjct: 459 ETIARIRAGDTSERQVHLLRELCDTMMAGSLCAMGGMTPYPVLSALDHF 507 >gi|186475493|ref|YP_001856963.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815] gi|184191952|gb|ACC69917.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815] Length = 518 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 217/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S D ++ G + L D + + SGLRGRGGA F G+KW + +D+ Sbjct: 116 STDDYIANGGIVGLYNALAMTGDAAVEALIESGLRGRGGAAFPAGIKWRTVRAANADQ-K 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG +IA GA IYVR E+ +L+ Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPFVLIEGMIIAGIVTGATVGHIYVRSEYPHSIATLEE 234 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + A+G LG +S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 235 AIGKARAAGWLG-DSVLGSEHRFELFVAKGAGAYVCGEETALLESLEGKRGIVRAKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV ++A VP I +GA++Y FG +RGT F I+G+V VE Sbjct: 294 ALEGLFGKPTVINNVITLATVPIIFAKGAAFYKDFGMGRSRGTLPFQIAGNVKQGGLVEL 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + T EL+ + GG G AV GG LP Q +DY+ ++G+ +G Sbjct: 354 AFGCTLRELMFDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPLDYEEYAKVGAVVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + V++R+ G +++ Sbjct: 412 HGGLVIHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIQRIRNGDTSTKQVQ 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPFPVVSALDHF 503 >gi|254468969|ref|ZP_05082375.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13] gi|207087779|gb|EDZ65062.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13] Length = 517 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 142/411 (34%), Positives = 220/411 (53%), Gaps = 9/411 (2%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ SL D + + + K + I+NEVK SGLRGRGGA F Sbjct: 99 LKNQERLTFARVGITDPLSLKDYIDHEGFVGLKKAINMEAQQIVNEVKDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S + Y+V NADE + GT DR M ++P LIEG +IA A+ A Sbjct: 159 PTGIKWQTVLDTESTQ-KYIVCNADEGDSGTYSDRMTMENDPFMLIEGMIIAGLAVNADH 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177 +IY+R E+ ++ L A+ + LG N S + ++ V AGAYICGEET+ Sbjct: 218 GYIYLRSEYPHAQDVLNKAIKIATENNYLGQNILNSNKNFTLE--VTRAAGAYICGEETS 275 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGK+G R KPP PA GL+G PT VNNV S+A +P I+ +GA +Y+ FG ++ Sbjct: 276 LLESLEGKRGLVRYKPPLPAIEGLFGKPTVVNNVVSLATIPIIMSKGAKYYADFGVGRSK 335 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT ++G++ +E++ IT EL+ GG G + + G + A + Sbjct: 336 GTLPIQLAGNLKQTGLIEKAFGITLRELLYDFGGGSATGKK--IKAVQVGGPLGAFIAEE 393 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ ++ + +G ++ D ++ + F ESCG+CTPCR G+ Sbjct: 394 NFDIELDYEAYSKLNAVVGHGGIVAFDEDVNMAEMARYSFEFCAIESCGKCTPCRIGSTR 453 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 M V++++V Q + + LL + + ++CA+G +P+ +K F Sbjct: 454 GMEVIDKIVARDEQPKNVALLENLCDTMVNGSLCAMGGMTPFPVMSALKYF 504 >gi|167586515|ref|ZP_02378903.1| NADH dehydrogenase (quinone) [Burkholderia ubonensis Bu] Length = 525 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 146/410 (35%), Positives = 223/410 (54%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + + L D + + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLRHDGLAGLKNALALDGDAACDALIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + +++ Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRHASANQ-KYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+AA+ +G LG+ S LG + ++ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIATLEAAIARARDAGWLGA-SVLGSAHAFELHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y FG +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPEHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRRGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|283850902|ref|ZP_06368188.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] gi|283573825|gb|EFC21799.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] Length = 454 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 211/376 (56%), Gaps = 9/376 (2%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 LRGRGGAGF G KW +P P Y+VVN DE EPGT KDR ++ +PH +IEG ++ Sbjct: 54 LRGRGGAGFPAGRKWQGIPAGYVG-PRYVVVNTDEMEPGTFKDRVLVNVDPHLVIEGIIL 112 Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGA 169 ++A+ A ++R + + L+ +GLLG N LG D DI +H AG Sbjct: 113 CAYAVSATLGICFIRPSYEADARLLERETQVARNNGLLGKNI-LGSDFSFDIHIHRSAGR 171 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 YICGE +A ++++ G + PR P + GL+ CPT VNN+E++A +P I+ G +W+ Sbjct: 172 YICGEASAQIKAISGLRPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVANGPAWFK 231 Query: 230 GFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288 G E GTKLFS+SG V P E + E+I H GG+ G + AVIPGG+ Sbjct: 232 GLAHSETGSGTKLFSVSGRVVRPDCYELPIGTPLREIIFDHAGGMPPG-RVIKAVIPGGA 290 Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 S P +P + MD++ +++ G LGTA++IV D++T ++ A L F+ ESCG C Sbjct: 291 SSPFMPEKYL-DLQMDFEPMRKAGQRLGTASIIVFDQNTCLVGATLNLMEFFARESCGWC 349 Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 TPCREG ++ ++ + G ++ ID++ ++ K + CA AA P+ L +F Sbjct: 350 TPCREGLPYVRDLLRLIEGGEGREEHIDMIKDMGKAMLS-AYCAFAPGAAEPLLSLFTHF 408 Query: 409 RPLIEERIDQYHRCNF 424 + E + Q RC F Sbjct: 409 EAEVREHLRQ-KRCPF 423 >gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] Length = 570 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 148/400 (37%), Positives = 222/400 (55%), Gaps = 21/400 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 K L+ + G + +K+ + G D +I + + LRG GGAGF TG KW F+ + Sbjct: 181 KDLAAYRAEGGYGQYEKLRDGGTNADAVIETLSDASLRGMGGAGFPTGKKWGFVRGY--E 238 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P + +NADE EPGT KDR M PH + EG +I + + A ++Y+R E+ + Sbjct: 239 GPRLMTINADEGEPGTFKDRFYMERNPHAMFEGALIGAHCVEAERIYLYMRDEYPAAIKV 298 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + + + A+GL + G+ I + GAGAYICGEE+A+LES+EGK+G PR +PP+ Sbjct: 299 MAECIADIEAAGL----APPGF---IEMRRGAGAYICGEESAMLESIEGKRGLPRHRPPY 351 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A GL+G PT NNVE++ VP IL G W++ G+ ++ G + +S+SG V P V+ Sbjct: 352 IAEAGLFGRPTLNNNVETLYWVPEILANGVEWFTSQGKPDHPGMRSYSVSGRVANPGVVK 411 Query: 256 ESMSITFDELIEKHCGGIR----GGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDG-LK 309 T +ELIE CGG+ G A +PGG+S LPA +G + +D+ G L Sbjct: 412 APAGSTVNELIEM-CGGMAAKEDGSVQTFKAYLPGGASGGILPAD--KGDVPLDFGGELA 468 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +G+ +G+ AV+V + + A L F+ HESCGQCTPCR GT M +++ G Sbjct: 469 TLGAFVGSHAVVVFSDADSMKDATLNLIDFFTHESCGQCTPCRGGTEKMGKLLRASSNGG 528 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 E + ++ + +IC LG AA P+ L+ +FR Sbjct: 529 DALDET-AIRDLEDVMRDASICGLGQAAPNPVNHLLTHFR 567 >gi|167032816|ref|YP_001668047.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1] gi|166859304|gb|ABY97711.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1] Length = 519 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 150/410 (36%), Positives = 223/410 (54%), Gaps = 7/410 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 T Q +F + SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGADVVAAVLDSGLRGRGGAAFPA 159 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + + + ++V NADE + GT DR +M +P LIEG +IA A+GA + Sbjct: 160 GIKWRTVRDAGAGQ-KFVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ SL A +G LG++ + G D+ V GAGAYICGEETALLES Sbjct: 219 IYVRSEYPDAIRSLDQAFTIARDAGYLGTDVAGSGQAFDLEVRVGAGAYICGEETALLES 278 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G++ VE + +T EL++ + GG G L A GG +P Sbjct: 339 FQLAGNIRQGGLVERAFGLTLRELVDGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 396 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ MG+ LG V+V D + ++ F ESCG+CTPCR G+ M V Sbjct: 397 PLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456 Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++RL+ +A++ + LL ++ ++ ++CA+G A+P+ +K F Sbjct: 457 VDRLIASSDLAERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYF 506 >gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 619 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 146/406 (35%), Positives = 232/406 (57%), Gaps = 15/406 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + ++ G ++ + +L I+ +K SGLRGRGG GF T +KW + D Sbjct: 128 ESIEEYIATGGYEALGTVLTTLTPQQTIDIIKKSGLRGRGGGGFPTYLKWQMV----HDN 183 Query: 77 P---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 P Y + N DE +PG DR ++ +PH ++EG +IA++A GA + Y+R E+ Sbjct: 184 PVEEKYFICNGDEGDPGAFMDRSLLEGDPHRVLEGMMIAAYATGAQNGYFYIRAEYPLAI 243 Query: 134 ESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 + ++ A+++ +GLLG N S+ ++ + V GAGA++CGEETAL++S+EG++G P Sbjct: 244 KRIKMAIEKAKETGLLGKNIFGSEFSFEAE--VRTGAGAFVCGEETALIQSIEGQRGNPT 301 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 KPP+PA GLY PT VNNVE++ + TI+ +GA W++ G E ++GTK+F+++G + Sbjct: 302 PKPPYPAVQGLYKKPTVVNNVETLGNIATIILKGADWFASMGTETSKGTKVFALTGDIRN 361 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 VE M IT ELI GG+ G AV GG S CL + I DY+ LKE Sbjct: 362 TGLVEVPMGITLRELIFDVGGGMIGDH-KFKAVQLGGPSGGCLTTQHLDVPI-DYESLKE 419 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ +G+ VIVM+ ++ F ESCG+C+PC+ G M+ +++R+ G Sbjct: 420 RGAMMGSGGVIVMNEEKCMVNVAKFFMDFCVDESCGKCSPCKIGLKQMLEILKRIDSGYG 479 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ +I+ L + + I ++C LG A P+ I+ FR E I Sbjct: 480 KEGDIEELQHLGETISKISLCGLGQTAPNPVLSTIRYFRDEYEAHI 525 >gi|307316385|ref|ZP_07595829.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83] gi|306898225|gb|EFN28967.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83] Length = 518 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + +++ + I+ EV SGLRGRGGAGF TG+KW + + R Sbjct: 117 SLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLEARGPR-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A A +IY R E+ + A Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATSATKGYIYTRSEYPHAIAVMSA 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++ A+G+LG+ S LG + D+ V GAGAY+CGEET+LL SLEGK+G R KPP P Sbjct: 236 AIEIARAAGVLGA-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+ PT +NNV S+A VP IL +GA +Y FG +RGT I+G+V + E Sbjct: 295 AHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFET 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T E++++ GG + AV GG P + DY+ +G Sbjct: 355 AFGLTLGEIVDEIGGGT-ASARPVKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 A +V D + D++K F ESCG+CTPCR G+ + V +R+ GI ++ + Sbjct: 413 HAGTVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRE 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ ++ ++CALG +P+ + +F Sbjct: 473 LLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504 >gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain, NADH-quinone oxidoreductase chain F related [uncultured archaeon] Length = 658 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 143/403 (35%), Positives = 236/403 (58%), Gaps = 5/403 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F+ + ++ D ++ G + + K+L + + ++ E+ ++ LRGRGG GF G KW Sbjct: 139 VFSGNLWVDPANIDDYIALGGYQALAKVLHRMTPEEVLEELNSANLRGRGGGGFPAGRKW 198 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + +P Y++VN DE +PG DR IM PH ++EG +IA++AIG+ F+YVR Sbjct: 199 EST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIGSQQGFVYVR 257 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ ++L A+++ G LG + G++ D+ VH GAGA++ GE +AL+ ++EGK Sbjct: 258 QEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESSALMNAIEGK 317 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR K ++ G++ P+ +NNVE+ A VP I+++GA W++ G E ++GTK+FS+ Sbjct: 318 VGEPRPKYVHTSDSGIWDKPSNLNNVETYATVPLIIKKGADWFNSIGTEGSKGTKIFSLV 377 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN VE M T ++I K GG G V GG S +P + + D+ Sbjct: 378 GKVNNTGLVEVPMGTTLRDIIYKI-GGGIRGGKRFKGVQTGGPSGGVIPERYLDSPV-DF 435 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L ++GS +G+ +IVMD T I+ F +ESCG+C PCREG M +++ + Sbjct: 436 DALTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLKRMREILDDI 495 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V G ++ +I+LL E++ ++ ++CALG AA P+ I+ F Sbjct: 496 VAGKGREGDIELLKEIADVMKSASLCALGTTAANPVLSTIRYF 538 >gi|187924996|ref|YP_001896638.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN] gi|187716190|gb|ACD17414.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN] Length = 520 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 218/392 (55%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L+ D + SGLRGRGGA F G+KW + + Sbjct: 116 SIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RGAKAAQK 174 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA GA IYVR E+ +L+A Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATVGHIYVRSEYPHSIATLEA 234 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ + A+G LG + LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 235 AIAKARAAGWLG-DRVLGSAHRFELFVAKGAGAYVCGEETALLESLEGKRGIVRAKPPVP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NNV ++A VP I RGA++Y FG +RGT F ++G+V VE Sbjct: 294 ALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ + GG G AV GG LP Q MDY+ +G+ +G Sbjct: 354 AFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 ++V D ++++ + F ESCG+CTPCR G+ + V+ R+ G R++ Sbjct: 412 HGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIGRIRNGDTSTRQVQ 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 503 >gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] Length = 714 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 145/414 (35%), Positives = 222/414 (53%), Gaps = 9/414 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G W + + I+ +V SGLRGRGGA F Sbjct: 288 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 347 Query: 61 STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 G+KW + S Y+ NADE + GT DR +M +P LIEG IA A+G Sbjct: 348 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 407 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ L A+ A+G LG+N + G + V GAG+Y+CGEET Sbjct: 408 ATQGYIYVRSEYPHSIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 467 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 A+LES+EGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y G+G + Sbjct: 468 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 527 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 RGT F ++G++ VE++ +T EL++ GG G + I G + A Sbjct: 528 RGTLPFQLAGNIARGGLVEKAFGLTLRELVQDFGGGTASG--RPVKAIQVGGPLGSYVAP 585 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ G+ +G ++V D S D+ + F ESCG+CTPCR G+ Sbjct: 586 EDWDDPLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 645 Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V++R+ + G + LL + ++ ++CA+G +P++ ++++ Sbjct: 646 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHY 699 >gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 630 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 219/392 (55%), Gaps = 13/392 (3%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVVNADESEPGTC 92 L+K +I EVK++ LRGRGGAGF G+KW + CS D+ Y+V NADE +PG Sbjct: 164 LDKSSAAVIEEVKSARLRGRGGAGFPAGVKW----EKCSQQDDKEKYVVCNADEGDPGAF 219 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 DR I+ PH ++EG I +A+GA +IYVR E+ + L+ A+ + GLLG N Sbjct: 220 MDRAILESNPHLVLEGMAICGYAVGASKGYIYVRAEYPKATSRLRIAISQAKEKGLLGKN 279 Query: 153 SKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 LG D DI + G+GA++CGE TAL+ S+ G G P +PP A GLYG PT +NN Sbjct: 280 I-LGSDFSFDIEIFEGSGAFVCGEGTALINSMAGNMGIPETRPPRMAVSGLYGKPTVLNN 338 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270 V++ A VP I++ GA W+ G E N GT +F++ G + VE M T LI Sbjct: 339 VKTFAYVPGIVKNGAHWFRQKGTEQNPGTAVFALVGKIKNSGLVEVPMGTTLRRLIYDVG 398 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GI AV GG S CLP + I D+D L + G+ +G+ ++V+D + ++ Sbjct: 399 EGIPND-KKFKAVQIGGPSGGCLPEDALDIPI-DFDSLHDAGAIMGSGGIVVLDENDCMV 456 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 F +HESCG+CT CR GT M+ ++ + +G ++DLL E+++++ ++ Sbjct: 457 TVARYFLEFTQHESCGKCTFCRLGTKHMLDILTAITQGKGSLSDLDLLLELAEDVRDGSL 516 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 C LG A P+ ++ FR E +++ RC Sbjct: 517 CNLGGTAPNPVLTTLRYFRDEYEAHLEE-GRC 547 >gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] Length = 570 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 150/414 (36%), Positives = 220/414 (53%), Gaps = 19/414 (4%) Query: 12 LYGLQGKSLSDSMSRG-HWDN--VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF 68 + G+ G S + +++ H N + K D +I E+ ASGL GRGGAGF TG KW Sbjct: 166 ITGMVGDSFTTTLTYASHHANAGITKAAAMEPDEVIAEISASGLCGRGGAGFPTGTKWKM 225 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 D Y++ NADE EPGT KDR + + EG IA++AI A +Y+R E Sbjct: 226 AADANGD-VKYMICNADEGEPGTFKDRITLSWFADLVFEGMTIAAYAIRASQGIVYLRAE 284 Query: 129 FIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + L+ + +GLLG + K G++ DI + GAG+Y+CGEETAL+ESLEG + Sbjct: 285 YAYLLPHLEQVLKARREAGLLGCDISGKEGFNFDIRIQMGAGSYVCGEETALIESLEGNR 344 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR +PP+P G G PT VNNVE++A V IL RGA W+SG G E ++G KLFS+SG Sbjct: 345 GEPRNRPPYPTEAGFLGQPTVVNNVETLATVSVILARGAQWFSGIGTEKSKGFKLFSVSG 404 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 P E T L+ G + AV GG S LPA + G + Y+ Sbjct: 405 ECARPGLYELPWGSTVSGLLA------LAGGEGAKAVQIGGYSGRFLPAAEF-GRKLAYE 457 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 ++G+G ++VI+ D+++ F+ ESCGQCTPCR+G ++ + L Sbjct: 458 ---DLGAG---SSVIIYGPDRDLLEVAENYLEFFVEESCGQCTPCRDGNVVLLNGIRSLR 511 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G +++D L +++ I + C LG ++ + + + FR I + H Sbjct: 512 NGKCSGQQLDELLSLAETICVASKCGLGQSSPKVLLSINRYFRNEINAHLTAEH 565 >gi|220920302|ref|YP_002495603.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219944908|gb|ACL55300.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 519 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 215/393 (54%), Gaps = 8/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S++D + G + + + LE G ++ VK SGLRGRGGAGF TG+KW+ + +D+ Sbjct: 117 SVADYRAHGGYRGLARALEIGPADTVDAVKVSGLRGRGGAGFPTGIKWNTVMLAEADQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P TLIEG IA A+GA +IY+R E+ + L+ Sbjct: 176 YVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGATRGYIYLRSEYPNAYQILKT 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G D + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIAAGERAGVLGRNILGSGKDFFLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNV S A VP IL G Y+ +G +RGT ++G+V Y +E + Sbjct: 296 LKGLFGRPTLVNNVLSFAAVPWILEHGGEAYANYGMGRSRGTLPIQLAGNVKYGGLIETA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT +IE GG G A + P G+ P + + MDY+ + Sbjct: 356 FGITLRAVIEDFGGGSLSGRPVRAAQVGGPLGAYFPDV----LFDTPMDYEAFAARKGLV 411 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G V+V D + D+ + F ESCG+CTPCR G MERL+ G A + Sbjct: 412 GHGGVVVFDDTVDMARQARFAFEFCAVESCGKCTPCRIGAVRGRETMERLLAGEAPAEPL 471 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L+ ++ + + ++CA+G P+ I +F Sbjct: 472 RLIEDLCEVMTDGSLCAMGGLTPVPVMSAITHF 504 >gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] Length = 586 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 159/426 (37%), Positives = 241/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 M+ Q R+ G+ + + D ++ + +K I E + IIN VK +GL GRGGA Sbjct: 100 MIAKQKRVVLQNCGIIDPERIEDYLAVDGYKAAEKAIKEMSPEDIINTVKVAGLAGRGGA 159 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ K D YLV NADE +PG DR ++ +PH LIEG +IA+ AIGA Sbjct: 160 GFPTWFKWNEAHKAKGDV-KYLVCNADEGDPGAFMDRSVLESDPHALIEGMIIAAKAIGA 218 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +YVR E+ + L+ A+ + G LG N + D+ + GAGA++CGEETA Sbjct: 219 AQGVVYVRAEYPLAIKRLENAIGQAREKGYLGENIFGSAFSFDLRIKAGAGAFVCGEETA 278 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A VP I R Y G EN++ Sbjct: 279 LIASLEGERGMPRLKPPFPAQKGYWAKPTNINNVETYANVPWIFRNSGETYGQLGNENSK 338 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M +T ++I GGI+ AV GG S C+PA + Sbjct: 339 GTKVFALTGKIKKGGLVEIPMGLTLRDVIYDIGGGIKND-KAFKAVQMGGPSGGCVPA-E 396 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++DY + + G+ +G+ ++VMD +T ++ F + ESCG+C CR GT Sbjct: 397 LVDTVIDYPSITKTGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCNYCRIGTMR 456 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G + +I+LL E+ ++ ++C LG A P+ ++ FR E+ I Sbjct: 457 MLEILTRITEGEGRDGDIELLEELCLKVKEGSMCGLGQTAPNPVLTTLRYFRNEYEDHIY 516 Query: 418 QYHRCN 423 + H+C Sbjct: 517 K-HKCT 521 >gi|85707197|ref|ZP_01038283.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Roseovarius sp. 217] gi|85668251|gb|EAQ23126.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Roseovarius sp. 217] Length = 502 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 217/393 (55%), Gaps = 10/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +++D + G + + +E I+ EV SGLRGRGGAGF TG+KW + + + + Sbjct: 105 NITDYEAHGGLVGLRRAIEMDGAGIVAEVTQSGLRGRGGAGFPTGIKWKTVFEAQAPQ-K 163 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P TLIEG IA +GA ++Y+R E+ ++ Sbjct: 164 YIVCNADEGDSGTFADRMVMEGDPFTLIEGMTIAGLGVGATRGYVYLRSEYPDAIRVMRR 223 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV+ A+G+LG++ S +D++I V GAGAY+CGEET+LL SLEGK+G R KPP Sbjct: 224 AVEIARAAGVLGADVLGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPL 281 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G G PT VNNV S+A VP I +GA Y+ FG +RGT I+G+V E Sbjct: 282 PALEGFLGRPTVVNNVISLATVPVIFEKGAQHYADFGLGRSRGTVTLQIAGNVARGGLFE 341 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT DE++ GG G + AV GG +P A + Y+ L G L Sbjct: 342 TAFGITLDEVVNDLGGGTASGRP-VKAVQVGGPLGSYIPVDNFDAA-LGYEELDARGGLL 399 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G A ++V D + D+++ F ESCG+CTPCR G + ++R+ G I Sbjct: 400 GHAGLVVFDDAADMLQMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAG--DGSAI 457 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++ ++CALG P+ + +F Sbjct: 458 PLLTDLCETMKDGSLCALGGFTPLPVMSALTHF 490 >gi|73540324|ref|YP_294844.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72117737|gb|AAZ60000.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 521 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 220/410 (53%), Gaps = 5/410 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 101 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMEPAAIVQEVTDSGLRGRGGAA 160 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S Y+V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 161 FPTGIKWKTVLGAKS-AVKYIVCNADEGDSGTFSDRMVMEDDPFVLIEGMTIAGLAVGAE 219 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L AA+ A+G LG + + G + V GAGAY+CGEETAL Sbjct: 220 YGYIYCRSEYPHAIAVLNAAIATATAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 279 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA Y FG +RG Sbjct: 280 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAQHYRDFGMGRSRG 339 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 340 TLPFQLAGNIKQGGLVEKAFGVTLRELLYDYGGGTRSGR-AVRAVQVGGPLGAYLPEARF 398 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ G +G ++V D + D+ + F ESCG+CTPCR G+ Sbjct: 399 D-VPMDYEAYAAFGGVVGHGGIVVFDETVDMARQARYAMEFCAIESCGKCTPCRIGSTRG 457 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 458 VEVMDRIIAGNEPVKHVKLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 507 >gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] Length = 635 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 223/384 (58%), Gaps = 6/384 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ D +L + +I E+K SGLRGRGG GF TG KW + +D Y+V NADE Sbjct: 177 GYRALADSLLNGTPEAVIEEIKRSGLRGRGGGGFPTGRKWELASRQQADT-KYVVCNADE 235 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 +PG DR IM +PH+++E + ++IG+ +Y+R E+ + L+ A+ + Sbjct: 236 GDPGAFMDRSIMEGDPHSIVEAMALCGYSIGSSKGLVYIRAEYPLAIQRLKTAIAQAREY 295 Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GLLG N G+ DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA G G P Sbjct: 296 GLLGDNIFGTGFCFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLGKP 355 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNN E++A +P IL RGA W+S G E ++GTK+F+++G +N +E M T E+ Sbjct: 356 TNVNNAETLANIPIILTRGAEWFSTIGTEFSKGTKVFALAGKINNVGLIEVPMGTTLREV 415 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 I + GG G AV GG S CL + I D+D L GS +G+ +IVMD Sbjct: 416 IYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAEGSMMGSGGMIVMDE 473 Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 D + ++ R + F ESCG+CTPCR G ++ ++ ++ +G ++++ L + + Sbjct: 474 D-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLEILNKITEGRGSEKDLQTLSTLGQV 532 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 I+ +C LG + P+ + NF Sbjct: 533 IKDTALCGLGQTSPNPVLSTLNNF 556 >gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] Length = 717 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/411 (34%), Positives = 223/411 (54%), Gaps = 7/411 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G W + + I+ +V SGLRGRGGA F Sbjct: 295 LARQERLTFARVGIVDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLESGLRGRGGAAF 354 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+ NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 355 PAGIKWKTVAAAPAPQ-KYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAALAVGATQ 413 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ L A+ A+G LG+N + G + V GAG+Y+CGEETA+L Sbjct: 414 GYVYVRSEYPHAIAVLNEAIARASAAGWLGNNVAGSGKAFYLQVRKGAGSYVCGEETAML 473 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y G+G +RGT Sbjct: 474 ESIEGKRGIVRAKPPLPAIEGLFGRPTVINNVITLATVPIILARGAAFYQGYGMGRSRGT 533 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ +T EL++ GG G + I G + A + Sbjct: 534 LPFQLAGNIAQGGLVEKAFGLTLRELVQDFGGGTASGRP--VKAIQVGGPLGSYVAPEDW 591 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ G+ +G ++V D D+ + F ESCG+CTPCR G+ + Sbjct: 592 DDPLDYETYAAKGNVVGHGGLVVHDDGADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 651 Query: 360 RVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R+ + G + LL + ++ ++CA+G +P++ ++++ Sbjct: 652 EVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHY 702 >gi|121609341|ref|YP_997148.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2] gi|121553981|gb|ABM58130.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2] Length = 518 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 143/409 (34%), Positives = 223/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL+D + + + + L I+ +V SGLRGRGGA F Sbjct: 99 LRQQERLTFARMGVTDPLSLADYQAHEGFAGLRRALALSPSEIVQQVLDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + S + Y+V NADE + GT DR M +P LIEG IA+ A GA Sbjct: 159 PAGIKWKTVAAASSAQ-KYIVCNADEGDSGTYSDRMAMEGDPFMLIEGMTIAAVATGATQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +++ A+ + A+G GSN K G + V AGAY+CGEETA+L Sbjct: 218 GYIYIRSEYPHAIATMREAIAKASAAGFSGSNILKSGKTFHLEVRKAAGAYVCGEETAML 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G P+ +NNV + A VP IL RGA++Y+ +G + GT Sbjct: 278 ESIEGKRGVVRAKPPIPALKGLFGQPSVINNVITFASVPIILARGAAYYTDYGVGRSSGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + +E++ IT +L+ GG G + AV GG +P + Sbjct: 338 LPFQLTGNIKHGGLIEKAFGITLRQLLFDFGGGSASGRP-IKAVQVGGPLGAYVPE-RYW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G +G ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 396 DVPMDYEAYAAVGVTVGHGGIVVHDDTADLSRLARYAMEFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R+ G ++++LL ++ + ++CALG P+ + ++ Sbjct: 456 EVLDRIAAGNNNAKQVELLRDLCDTMLHGSLCALGSMTPNPVLSALNHY 504 >gi|226939218|ref|YP_002794289.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9] gi|226714142|gb|ACO73280.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9] Length = 433 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 139/411 (33%), Positives = 224/411 (54%), Gaps = 7/411 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ GL + SLSD ++ G + + + L G D + ++ SGLRGRGGA Sbjct: 17 FLARQQRLVFARAGLTRPLSLSDYLATGGYAGLQRWLSTGADAFLQALETSGLRGRGGAA 76 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +KW + + + ++V NADE + GT DR ++ +P+ LIEG +A+ +GA Sbjct: 77 FPAHIKWQGVRRAHAVE-KFVVCNADEGDSGTFADRMLLEGDPYALIEGITLAALTVGAR 135 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ R E ++ A+ + +G LG N G ++ V GAGAYICGEE+AL Sbjct: 136 QGYVYIRSEYPRAIEHMREAIAQARQAGYLGDNILGNGQAFELEVRCGAGAYICGEESAL 195 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LES+EG++G R +PP P+ GL+G PT V+NV ++A +P I R G +S +G E +RG Sbjct: 196 LESIEGRRGMVRPRPPLPSEAGLFGQPTLVHNVMTLAAIPFIAREGGEAFSRYGSERSRG 255 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ VE + + EL+ GG G I G PA Sbjct: 256 TLAVQLAGNLRQTGLVETAFGLRLSELLHDFGGGSASGRSIKAVQIGGPLGAWVAPAD-- 313 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGW 357 ++DY+ G+ +G V+ +D D+ + RL++ F ESCG+CTPCR GT Sbjct: 314 FDLLLDYEAFVARGALVGHGGVVAVDDRADLAD-LARLALHFCAEESCGKCTPCRVGTVR 372 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++R+ G+ +++LL E+ + + ++CALG +P+ ++ F Sbjct: 373 AGELVDRIRTGLHPDDDVELLTELCQTMRDASLCALGGMVHFPVLSALRQF 423 >gi|78065617|ref|YP_368386.1| NADH dehydrogenase (quinone) [Burkholderia sp. 383] gi|77966362|gb|ABB07742.1| formate dehydrogenase beta subunit [Burkholderia sp. 383] Length = 525 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 147/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + + +L D + + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQYEGLAGLKNVLALDGDAVCEALIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + S Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+AA+ +G LG + LG + ++ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GLYG PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLYGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE S +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELSFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYSMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|115350950|ref|YP_772789.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria AMMD] gi|115280938|gb|ABI86455.1| formate dehydrogenase beta subunit [Burkholderia ambifaria AMMD] Length = 525 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 146/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDVACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + S Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+ A+ +G LG + LG + D+ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHV-LGSAHAFDLHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ + GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ KG +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRKGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|313499696|gb|ADR61062.1| NADH dehydrogenase (quinone) [Pseudomonas putida BIRD-1] Length = 519 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 150/410 (36%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 T Q +F + SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 100 TQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 159 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + + + Y+V NADE + GT DR +M +P LIEG +IA A+GA + Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L A +G LG++ + G D+ V GAGAYICGEETALLES Sbjct: 219 IYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALLES 278 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G++ VE + +T EL+E + GG G L A GG +P Sbjct: 339 FQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 396 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ +G+ LG V+V D + ++ F ESCG+CTPCR G+ M V Sbjct: 397 PLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456 Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++RL+ I ++ + LL ++ ++ ++CA+G A+P+ +K F Sbjct: 457 VDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYF 506 >gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium sp. 4-46] gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium sp. 4-46] Length = 572 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 203/370 (54%), Gaps = 21/370 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ + LRG GGAGF TG KW + P + VN DE EPGT KD+ + +P Sbjct: 215 VLKVLDDGSLRGLGGAGFPTGRKWRSV--RGEPGPRLMAVNGDEGEPGTFKDQLYLNTDP 272 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +EG +I + + A ++Y+R E+ R+ L + + G + Sbjct: 273 HRFLEGTLIGAHVVEAEDVYLYIRDEYPIARQILAREIAKLPPGG-----------PRLH 321 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 + GAGAYICGEE++L+ES+EGK+G PR KPP+P VGL+G PT +NNVE++ + ++ Sbjct: 322 LRRGAGAYICGEESSLIESIEGKRGLPRHKPPYPFQVGLFGRPTLINNVETLYWIRDLIE 381 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 RG W+ GR G + +S+SG V P +T ELIE+ CGG+ G A Sbjct: 382 RGPDWWKSHGRNGRTGLRSYSVSGRVREPGVKLAPAGVTIRELIEEFCGGMAEG-HRFAA 440 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 +PGG+S LPA M +D+ L++ G +G+AAV+V+ DI A L F++ Sbjct: 441 YLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIGSAAVVVLSDKDDIRGAALNLMRFFED 499 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCGQCTPCR GT +ME V + DLL E+S+ + +IC LG AA+ P+ Sbjct: 500 ESCGQCTPCRVGTQKARMLMESGVW------DTDLLGELSQCMRDASICGLGQAASNPLT 553 Query: 403 GLIKNFRPLI 412 +IK F L Sbjct: 554 SVIKYFPDLF 563 >gi|219851497|ref|YP_002465929.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c] gi|219545756|gb|ACL16206.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c] Length = 562 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 139/378 (36%), Positives = 215/378 (56%), Gaps = 5/378 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ V+ SGLRGRGGAGF G+KW K + Y++ NADE +PG +R+ M +P Sbjct: 188 VIDVVEKSGLRGRGGAGFPAGLKWRITRKETATE-KYIICNADEGDPGAYMNRNEMESDP 246 Query: 103 HTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVD 160 H LIEG ++ ++AIG IY+R E+ E L A+++ GLLG + G+ D Sbjct: 247 HMLIEGMILGAYAIGGVKTGVIYIRAEYPLAIERLTKAIEQAREYGLLGDDILGTGFSFD 306 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + + GAGA++CGE TAL+ S+EG+ G+P +PP + GL+G PT +NNVE+ VP I Sbjct: 307 LHLAIGAGAFVCGESTALVASIEGRTGRPHPRPPRLTDKGLWGKPTDLNNVETWCNVPVI 366 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + RGA WY+ G N GTK+FS+ G V+ VE + T + ++ G GG + Sbjct: 367 VSRGAGWYAAIGAPGNTGTKVFSLVGKVDRVGLVEVPLGTTLERIVIDIGNGGAGG-KAV 425 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S C+P ++ MDY+ L +GS +G+ ++VMD T ++ F Sbjct: 426 KAVQTGGPSGGCIPV-RLFDTPMDYESLNRVGSIMGSGGIVVMDEDTGMVDIARYFINFA 484 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+C PCREG + ++ RL+ G ++++ L ++ + ++C LG +A P Sbjct: 485 IGESCGKCVPCREGLKHTLLLLNRLLAGKGTGQDLETLALLADTVAKTSLCGLGQSAPNP 544 Query: 401 IQGLIKNFRPLIEERIDQ 418 + ++ FR E I++ Sbjct: 545 VLTTLEYFRDEYEGLIER 562 >gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3') subunits of formate dehydrogenase and to nuoE and nuoF of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch sediment'] Length = 710 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 217/391 (55%), Gaps = 15/391 (3%) Query: 20 LSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L+D++ +G + ++LE+G +INEVKASGL GRGGA F KW + + P Sbjct: 318 LADALRQGSYATFGRVLEQGDPLAVINEVKASGLTGRGGAYFGAAHKWEAC-RNATGSPK 376 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV+N +E EPG KDR +M +PH L+EG ++ +FA GA +++ GE ++ Sbjct: 377 YLVINGEEGEPGIFKDRHLMEGDPHRLLEGILLTAFACGASRGILFINGEAELSARRMEN 436 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ A GLLG + + + + G+G +I GEETAL+E++EGK+ PR KPPFP Sbjct: 437 ALRSAEAVGLLGERILESDFSFQLELRRGSGGFILGEETALMEAIEGKRAMPRPKPPFPV 496 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT ++NVE++ VP I+ RGA+W++ G RGTKLF +SGH+ P VE Sbjct: 497 EAGLWGKPTVIHNVETLTAVPLIVSRGAAWFTALG--GGRGTKLFGLSGHLARPGIVEVP 554 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M IT LI + GG + G A++ G S V +R + D + G+ Sbjct: 555 MRITLRHLIGEIGGGGKDGQTLKAALVGGPSGV------IVRSSRFDEPLIPGGTISPGS 608 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 V+ + S I L F ESCG+CTPCREGTG ++ ++++ + +++ ++ Sbjct: 609 GGVVALGDSVSIDDVTRTLLTFNAQESCGKCTPCREGTGRLLAILQQ-SQHSGRRQALEE 667 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L EV I ++C LG +A + + F Sbjct: 668 LAEV---IRLASLCGLGQSAPLSLLSALDQF 695 >gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 633 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/401 (37%), Positives = 226/401 (56%), Gaps = 6/401 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + M+RG + L++ II +K SGLRGRGG GF TG+KW +R Sbjct: 166 EKIEEYMARGGYKAFLSALKRNAPQEIIAAIKESGLRGRGGGGFPTGVKWESCAAHQGER 225 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NADE +PG DR I+ +PHT+IEG +IA AIG+ FIYVR E+ + L Sbjct: 226 --YIICNADEGDPGAYMDRSILEGDPHTIIEGMLIAGLAIGSREGFIYVRNEYPLAVKRL 283 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + GLLG + + + ++ + GAGA++CGE TAL+ SLEG+ G+PR K Sbjct: 284 VTAIRQATEYGLLGQHIAGSDFSFEMKISTGAGAFVCGESTALMASLEGEVGRPRAKYVH 343 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 G P+ +NNVE+ A VP IL +GA W++ G ++++GTK+FS+ G + VE Sbjct: 344 TVEKGFRQGPSNLNNVETYANVPVILAKGARWFANLGTDHSKGTKVFSLVGKIKNTGLVE 403 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + +I GGI G AV GG S C+P + + D++ L ++GS + Sbjct: 404 VPMGTSLRNIIFDIGGGIP-GKKAFKAVQTGGPSGGCIPEAYLDLGV-DFNELAKVGSIM 461 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IVMD+ T ++ F K ESCGQC PCREG M+ ++ R+ +G ++ +I Sbjct: 462 GSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKRMLEILTRVCEGDGREGDI 521 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 DLL E+ + ++C LG +A P+ IK FR E I Sbjct: 522 DLLQELGDMVRKFSLCGLGTSAPNPVLTTIKYFREEYEAHI 562 >gi|148548760|ref|YP_001268862.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1] gi|148512818|gb|ABQ79678.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1] Length = 519 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/410 (36%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 T Q +F + SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 159 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + + + Y+V NADE + GT DR +M +P LIEG +IA A+GA + Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 +YVR E+ L A +G LG++ + G D+ V GAGAYICGEETALLES Sbjct: 219 VYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALLES 278 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G++ VE + +T EL+E + GG G L A GG +P Sbjct: 339 FQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 396 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ +G+ LG V+V D + ++ F ESCG+CTPCR G+ M V Sbjct: 397 PLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456 Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++RL+ I ++ + LL ++ ++ ++CA+G A+P+ +K F Sbjct: 457 VDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYF 506 >gi|26988908|ref|NP_744333.1| NADH dehydrogenase (quinone) [Pseudomonas putida KT2440] gi|24983719|gb|AAN67797.1|AE016411_2 formate dehydrogenase, beta subunit, putative [Pseudomonas putida KT2440] Length = 525 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 150/410 (36%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 T Q +F + SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 106 TQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 165 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + + + Y+V NADE + GT DR +M +P LIEG +IA A+GA + Sbjct: 166 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 224 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L A +G LG++ + G D+ V GAGAYICGEETALLES Sbjct: 225 IYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALLES 284 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 285 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 344 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G++ VE + +T EL+E + GG G L A GG +P Sbjct: 345 FQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 402 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ +G+ LG V+V D + ++ F ESCG+CTPCR G+ M V Sbjct: 403 PLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 462 Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++RL+ I ++ + LL ++ ++ ++CA+G A+P+ +K F Sbjct: 463 VDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYF 512 >gi|171059432|ref|YP_001791781.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6] gi|170776877|gb|ACB35016.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6] Length = 523 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 144/395 (36%), Positives = 216/395 (54%), Gaps = 8/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL+D + G W + + L+ D I V SGLRGRGGA F G+KW + + +D+ Sbjct: 118 SLTDYATHGGWAGLRQALQMPADGIWQTVLDSGLRGRGGAAFPAGIKWRTVAQAQADQ-K 176 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR ++ +P+ LIEG IA+ A GA ++YVR E+ + Sbjct: 177 YVVCNADEGDSGTFADRMVLEDDPYLLIEGMTIAALACGATRGYVYVRSEYPLAVQVFGE 236 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ +G LG N G+ ++ V GAG+Y+CGEETA+LESLEGK+G R KPP PA Sbjct: 237 AIERARTAGYLGDNILGSGHAFELEVRMGAGSYVCGEETAMLESLEGKRGIVRAKPPIPA 296 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT +NNV + A P IL GA Y GR + GT F ++G++ VE + Sbjct: 297 LSGLFGQPTVINNVLTFAAAPWILSHGAQAYKDHGRGRSTGTLPFQLAGNIARGGLVELA 356 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T EL+ GG G + AV GG LP Q +DY+ +G+ +G Sbjct: 357 FGVTLRELVFDWGGGSASG-RPVKAVQVGGPLGTYLPESQWD-IPLDYEAYAAVGAVVGH 414 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ----KR 373 ++V D + D+ K F ESCG+CTPCR G+ + V++R+V Q ++ Sbjct: 415 GGLVVHDDTADLSKLARYAMAFCAIESCGKCTPCRIGSTRGVEVIDRIVTNHHQPAVREQ 474 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ LL ++ + ++CA+G +P+ + +F Sbjct: 475 QVKLLRDLCDTMVSGSLCAMGGMTPYPVLSALNHF 509 >gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Shewanella woodyi ATCC 51908] Length = 562 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 218/393 (55%), Gaps = 20/393 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVK--ASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +SL+D ++ G + +++ D I E K ++GLRG GGAGF +G KWSF+ Sbjct: 184 QSLTDYLAGGGYQFYEQMKASTLDPIEVEDKVFSAGLRGMGGAGFPSGKKWSFV--RAES 241 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P Y+ VN DE EPGT KDR + +PH +EG +IA+ A+ A ++Y+R E+ Sbjct: 242 GPRYMAVNGDEGEPGTFKDRYYLETQPHLFMEGMLIAAQAVEAEHIYLYLRDEYPAALTI 301 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L+ + E ++ ++ +GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF Sbjct: 302 LKREIAELESANIV----PIGY---IELRRGAGAYICGEESAMIESIEGKRGLPRHRPPF 354 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A G++ PT V+N+E++ V I R G + + G + +S+SG V P Sbjct: 355 VAQKGIFNQPTLVHNIETLYWVARICREGGEILTSVSKNGRTGLRSYSVSGRVINPGVYL 414 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T +LIE G I+G L A PGG S LPA + +D+D L+ GS + Sbjct: 415 LPAGSTITDLIEAAGGMIQG--HRLKAYQPGGPSSGILPA-SLADVPLDFDTLQPHGSLI 471 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V+ I A + F+ HE+CGQCTPCR G +++M K + Sbjct: 472 GSAAVLVLSDKDSIRDAALNMMEFFDHENCGQCTPCRVGCEKAVKLMRE------DKWDT 525 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL E+S +E +IC LG AA PI+ IK+F Sbjct: 526 SLLSELSSVMEDASICGLGQAAPNPIRLTIKHF 558 >gi|254482995|ref|ZP_05096230.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine gamma proteobacterium HTCC2148] gi|214036680|gb|EEB77352.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine gamma proteobacterium HTCC2148] Length = 509 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 140/392 (35%), Positives = 217/392 (55%), Gaps = 8/392 (2%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L +SR +D ++ L + I++EV SGLRGRGGA F G+KW+ + + D Y Sbjct: 118 LDAYLSRHGFDGLEHALHLPPEDIVDEVTRSGLRGRGGAAFPAGIKWNTVLQAAGDE-KY 176 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 + NADE + GT DR +M +P+ LIEG IA A+GA +IY+R E+ E + A Sbjct: 177 IACNADEGDSGTFADRLLMESDPYMLIEGMTIAGLAVGAQQGYIYLRSEYPHAWEVMHTA 236 Query: 140 VDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + A+G LG +S + +++ + GAG+YICGEETA+LESLEG++G R KPP P Sbjct: 237 IAKAEAAGYLGEGICDSDRQFHLELRL--GAGSYICGEETAMLESLEGRRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT VNNV ++A +PTI+ GA Y+ G+ + GT ++G++ VE Sbjct: 295 AIEGLFGKPTVVNNVLTLAAIPTIMAGGAEAYAALGQGRSLGTITLQLAGNIKNGGLVEV 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++++ GG R G + A+ GG LP + +DY+ G LG Sbjct: 355 PYGATLRAVLDQFGGGTRSG-RPIRAIQVGGPLGAYLPE-PLWDTPLDYEAFAAAGGMLG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 V+V D + D+ + F ESCG+CTPCR G+ VM+R++ + + Sbjct: 413 HGGVVVFDDTVDMAQQARFAMAFCAEESCGKCTPCRVGSVRGTEVMDRIIARESLDENMA 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + +E ++CA+G P++ ++ F Sbjct: 473 LLDDLCETMELGSLCAMGGLTPNPVRSALQYF 504 >gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469] gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469] Length = 626 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 153/420 (36%), Positives = 232/420 (55%), Gaps = 8/420 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI N +S + ++ G + K L E D +++ V SGLRGRGG Sbjct: 139 FIAKQTRIVLENCGKFDAESFDEYLAGGGFSAFQKALFEMTPDEVVDVVDKSGLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + +++ Y+V N DE +PG D +M +P+ LIEG +IA +A+G+ Sbjct: 199 GFPTGRKWKQVARQ-AEKERYVVCNGDEGDPGAFMDGSVMEGDPYKLIEGMMIAGYAVGS 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176 +IYVR E+ L+ A+ E A +LG N LG D +H GAGA++CGE + Sbjct: 258 ENGYIYVRAEYPMSVARLKHAIAELEARHMLGDNI-LGTDFSFHMHINRGAGAFVCGEGS 316 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL S+EG +G PR+KPP GL+ PT +NNVE+ A VP I+ GA WY G E Sbjct: 317 ALTASIEGNRGMPRVKPPRTVEKGLWAKPTVLNNVETYANVPKIVLEGADWYRSIGTEGT 376 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK FS++G + +E M T ++I GG++ G AV GG S CL Sbjct: 377 PGTKTFSLTGSIQNTGLIEVPMGTTLRQIIFDIGGGMKDGG-TFKAVQIGGPSGGCLTE- 434 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q +D++ +K+ G+ +G+ ++VMD T +++ F + ESCG+C PCREGT Sbjct: 435 QHLDVPLDFESIKKYGAIVGSGGLVVMDDHTCMVEVARFFMSFTQRESCGKCVPCREGTK 494 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++E++V G + ++D L E++ ++ +C LG +A P+ ++ FR EE I Sbjct: 495 RMLEILEKIVAGKGELEDLDRLEELAGMVKDMALCGLGKSAPLPVLSTLRTFRKEYEEHI 554 >gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] Length = 611 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 210/374 (56%), Gaps = 21/374 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I +V+ S LRGRGGAGF TG KW ++ Y++ NADE EPGT KDR ++ +P Sbjct: 211 VIAQVEESLLRGRGGAGFPTGRKWRLAANTPAEE-RYVICNADEGEPGTFKDRVLLTEKP 269 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVD 160 L G IA++A+GA +Y+RGE+ R L+A + LLG+ + + D Sbjct: 270 DLLFAGMTIAAYAVGARHGILYLRGEYRYLRAYLEATLQRRREQNLLGAGILGRDDFSFD 329 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + GAGAYICGEE++L+ S EGK+G+P+ +PPFP G G PT VNNVE+++ VP I Sbjct: 330 IRIQMGAGAYICGEESSLISSCEGKRGEPKNRPPFPVQSGYLGHPTVVNNVETLSCVPRI 389 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + +GA W+ G G + GTKL S+SG P E + +T E++ + G + Sbjct: 390 MEQGAPWFRGMGTTGSSGTKLLSVSGDCVRPGIYEIAFGVTLAEILTQ------AGAQDA 443 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGL--KEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 A++ GG+S GQ+ G + L +++ S A++ + S +I++A Sbjct: 444 AAIVVGGAS------GQIVGRTEFHRRLCFEDLASA---GAIVCFNSSRNILEAAAYYMD 494 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ ESCG CTPCR G ++ + +E+++ G + ++D L +S I + C LG + Sbjct: 495 FFIEESCGYCTPCRVGNVFLKKGLEKIMHGEGEPEDLDYLRSLSDTIIATSRCGLGHTSP 554 Query: 399 WPIQGLIKNFRPLI 412 PI ++ F PL+ Sbjct: 555 NPILSTMEYF-PLV 567 >gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 567 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 216/377 (57%), Gaps = 20/377 (5%) Query: 34 KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 K L G DW + +++ +SGLRG GGAGF +G KW F+ ++ P YL VN DE EPGT Sbjct: 205 KELRDGGDWEKVQDDILSSGLRGLGGAGFPSGKKWGFV--RMNEGPRYLAVNGDEGEPGT 262 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR + PH +EG +IA++A+ A FIY+R E+ E L+ + +G++ Sbjct: 263 FKDRYYLERTPHVFLEGMLIAAWAVEAETCFIYMRDEYPAVLEILRREIAALEEAGIV-- 320 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + GY I + GAGAYICGEE+A++ES+EGKKG PR +PPF A VG++ PT V+NV Sbjct: 321 --EKGY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPFVAQVGIFNRPTLVHNV 375 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++ V I R G + + +G + +S+SG V P T ++IE G Sbjct: 376 ETLYWVSKICREGPECLNSTEKNGRKGLRSYSVSGRVAKPGVYLLPAGSTILDVIEA-AG 434 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+ G A PGG S LPA + +D+D L+ +G+ +G+AAV+V+ Sbjct: 435 GMAEG-HQFKAYQPGGPSSGLLPA-SIDDVPLDFDTLQPLGTFIGSAAVVVLSDQDTARD 492 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 A + F++ ESCGQCTPCR G +++M+ A K + DLL ++ + + +IC Sbjct: 493 AALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------ADKWDQDLLEDLCQVMGDASIC 546 Query: 392 ALGDAAAWPIQGLIKNF 408 LG AA PI+ +IK+F Sbjct: 547 GLGQAAPNPIRLVIKHF 563 >gi|83309268|ref|YP_419532.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] gi|82944109|dbj|BAE48973.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 467 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 210/372 (56%), Gaps = 23/372 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E RD + E++ +GLRG GGAGF T KW + P +VVNADE EPGT KDR Sbjct: 114 ELPRDEALTELERAGLRGMGGAGFPTARKWRSV--AAQPGPRLVVVNADEGEPGTFKDRW 171 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + + ++EG +IA++A+ A ++Y+R E+ + L + + L Sbjct: 172 FLENHAAQVLEGALIAAWAVEADEVYLYLRDEYADLHKGLATLIRD------------LP 219 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D+ I + GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A VGL+G PT VNNVE++ Sbjct: 220 GDITIHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLFGRPTLVNNVETLYW 279 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V +L GA + GR + G + +S+SG V P IT ELI++ CGG+ G Sbjct: 280 VSRLLAEGAELFGNEGRNGHHGLRTYSVSGRVKEPGVKIAPNGITVSELIDEFCGGMEDG 339 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 L A +PGG+S LPA + + ++E G +G+AAV+V ++ D+ L Sbjct: 340 -HVLAAYLPGGASGGFLPARLQ--PPLAFGAIEEHGGFIGSAAVVVFSQADDLRAVALNL 396 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + F+ HESCGQCTPCR GT + L+ G A R DLL +++ + +IC LG A Sbjct: 397 ARFFAHESCGQCTPCRVGTAKSV----GLLAGPAWDR--DLLDDLAGVMRDASICGLGQA 450 Query: 397 AAWPIQGLIKNF 408 A Q L ++F Sbjct: 451 APNVWQSLFRHF 462 >gi|218532745|ref|YP_002423561.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum CM4] gi|218525048|gb|ACK85633.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum CM4] Length = 519 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 214/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L+ G + I+ +V+ SGLRGRGGAGF G+KW+ + SD+ Sbjct: 117 SVEDYRAHGGYRGLEAALKLGAEGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG IA+ A GA +IY R E+ + ++L+ Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV + VP IL+ GA Y+ +G + GT ++G++ +E + Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILQHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ++IE GG G + AV GG P + +DY+ + +G Sbjct: 356 FGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFP-DDLLDTPLDYEAMAAKKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G + M++++ GI + + L Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I NF Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504 >gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 614 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 210/367 (57%), Gaps = 4/367 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ + ASGLRGRGG GF TG KW F S+ +++ NADE +PG DR ++ +P Sbjct: 173 VIDLITASGLRGRGGGGFPTGRKWQFAADQKSEE-KFIICNADEGDPGAFMDRAVLEGDP 231 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 HT++E I +AIGAH IY+R E+ L+ A+ + GLLG N G+D I Sbjct: 232 HTVLEAMAIGGYAIGAHTGVIYIRAEYPLAVRRLEIAIRQAEELGLLGRNIFDSGFDFRI 291 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + +GAGA++CGEETAL+ S+EGK+G+P +KPPFPA GL+ PT VNNVE+ A V I+ Sbjct: 292 EIKYGAGAFVCGEETALIHSIEGKRGEPTVKPPFPAVEGLWKKPTVVNNVETYACVGAIV 351 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R+GA W+ G + GTK+F+++G V VE M T +++ GGI+ G Sbjct: 352 RKGAEWFRSLGTAGSPGTKVFALAGKVAKVGLVEVPMGTTLRDIVFGIGGGIKNG-RAFK 410 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S C+ + I DY+ LK +GS +G+ +IVMD ++ F Sbjct: 411 AVQTGGPSGGCITPANLDLPI-DYEALKSIGSMMGSGGMIVMDEDDCMVNIAKFFLEFTL 469 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+CTPCR G M ++ + +G A ID L +S I+ +C LG + P+ Sbjct: 470 DESCGKCTPCRIGNRRMYEMLNEITEGRASLDVIDRLKTLSATIKDTALCGLGQTSPNPV 529 Query: 402 QGLIKNF 408 + NF Sbjct: 530 LSTLANF 536 >gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 530 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/345 (38%), Positives = 207/345 (60%), Gaps = 5/345 (1%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNA 84 G+ +D I + II+E+ SGLRGRGG G+ G+KW+ + K Y++ NA Sbjct: 168 GYQALLDCIWHRQPAAIIDEISKSGLRGRGGGGYPAGLKWATVAKAALPPGGRKYVICNA 227 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE +PG DR ++ PH ++EG IA++A+GA ++YVR E+ L+ A+ + Sbjct: 228 DEGDPGAFMDRSVLESAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVARLKKAISQAE 287 Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 GLLG +D + + GAGA++CGEETAL+ S+EGK+GQPR +PP+PA G+ G Sbjct: 288 KLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEETALVASIEGKRGQPRPRPPYPAEYGIKG 347 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 CPT +NNVE++A + I+ RG +W++ G E ++GTK+F+++G V +E M IT Sbjct: 348 CPTLINNVETLANITAIINRGGAWFATLGSEQSKGTKVFALAGKVVNTGLIEVPMGITLH 407 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E++E+ GG G ++ AV GG S C+PA + + DY+ L+ GS +G+ +I+M Sbjct: 408 EIVEEMGGGTPAG-GSIKAVQTGGPSGGCIPAAHFQLPV-DYESLQAEGSIMGSGGLIIM 465 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 D + ++ F ESCG+C PCR GT ++ ++E++ G Sbjct: 466 DEGSGMVDVARFFMEFCVDESCGKCVPCRVGTKQILLLLEKIGAG 510 >gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein [Delftia acidovorans SPH-1] gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia acidovorans SPH-1] Length = 727 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 144/416 (34%), Positives = 226/416 (54%), Gaps = 12/416 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + +L+D + G W +++ I+ EV SGLRGRGGA F Sbjct: 300 LARQERLTFARVGVIDPLNLADYAAHGGWQGLERAARMEPAAIVQEVLDSGLRGRGGAAF 359 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+ NADE + GT DR +M +P+TLIEG IA A+GA Sbjct: 360 PAGIKWKTVAAAAGPQ-KYIACNADEGDSGTFADRLLMEGDPYTLIEGMAIAGLAVGATQ 418 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +YVR E+ +L+ A+ A+G LG + + G + V GAG+Y+CGEETA+L Sbjct: 419 GLVYVRSEYPHAVATLREAIARAEAAGWLGRDVAGSGRAFHMEVRKGAGSYVCGEETAML 478 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG++G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y GFG +RGT Sbjct: 479 ESIEGRRGIVRAKPPLPAIEGLWGRPTVINNVITLATVPMILARGAAFYQGFGMGRSRGT 538 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ ++ EL+E GG G + G PA Sbjct: 539 LPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATGRTVKAVQVGGPLGSYVAPADW-- 596 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A +DY+ G+ +G ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 597 DAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 656 Query: 360 RVMERLVKGIAQKR-------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R+V+ A ++ LL + ++ ++CA+G +P++ + ++ Sbjct: 657 EVIDRIVRAGADPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHY 712 >gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72] gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72] Length = 602 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 146/383 (38%), Positives = 212/383 (55%), Gaps = 22/383 (5%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVV-NADESEPGTCKDR 95 GR ++E++ S LRGRGGAGF+T +KW+ C D P +VV NADE EPGT KDR Sbjct: 197 GRSGWLDEMQRSNLRGRGGAGFTTAVKWT----ACRDAAGPQKVVVCNADEGEPGTFKDR 252 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--S 153 ++ + EG +A++A GA +Y+RGE+ ++L A + + A+GLLG N Sbjct: 253 LLLTRMADAVFEGMTLAAWATGAQLGLLYLRGEYRYLLDALNATLTQRRAAGLLGRNILG 312 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + G+D DI +H GAGAYICGEETALLESLEGK+G PR++PPFP G G PT VNNVE+ Sbjct: 313 EAGFDFDIAIHLGAGAYICGEETALLESLEGKRGTPRIRPPFPVTHGYLGRPTVVNNVET 372 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 +A I G + ++ G + GTKL SISG P E +T + ++E CG Sbjct: 373 LAKTCLIACGGGAAFAATGTAQSTGTKLLSISGDCAAPGIYEYPFGVTVERVLED-CGA- 430 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 + AV GG++ L A + + I ++ + G A +V D D+ + Sbjct: 431 ----SDTQAVQVGGAAGITLAAYEFQRRIA-FEDVPTAG------AFMVFDSGRDLFEVA 479 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F+ HESCG CTPCR GTG + M++ G + ++ + + + ++ + C L Sbjct: 480 RNFVAFFAHESCGFCTPCRVGTGLLKAAMDKFASGHGSRGDLADIEWIDRLLKNASHCGL 539 Query: 394 GDAAAWPIQGLIKNFRPLIEERI 416 G +A P+ + FR E R+ Sbjct: 540 GASAPNPVLDTLLKFRSFYERRM 562 >gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] Length = 537 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/351 (37%), Positives = 202/351 (57%), Gaps = 21/351 (5%) Query: 60 FSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 F TG KW K+ +D P YL +N DE EPGT KDR + +PH L+EG +IA+ A+G Sbjct: 200 FPTGTKW----KIVNDLPGPKYLTINGDEGEPGTFKDRFHLERDPHRLLEGALIAAHAVG 255 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETA 177 ++Y+R E+ E L+ + +G++ ++D + GAGAYICGEE+A Sbjct: 256 VERIYLYMRDEYPAVLEILRREISALRDAGII-------TNIDFELRRGAGAYICGEESA 308 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 ++ES+EGK+G PR +PPF A VGL+G PT +NVE++ + IL +GA W++ GR ++ Sbjct: 309 MIESIEGKRGLPRHRPPFIAQVGLFGRPTLNHNVETLFWIRDILEKGADWFANQGRRGHK 368 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G + FS+SG V P +T +EL+ + CGG+ G N +PGG+S LPA Sbjct: 369 GFRSFSVSGRVKEPGVKLAPAGVTMNELLTEFCGGMEEGH-NFKGYLPGGASGGILPA-S 426 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+ L + G +G+ A++V D+ L F+KHESCGQCTPCR GT Sbjct: 427 LADEPLDFGTLDKHGCFIGSHAIVVFSDKDDMRDVALNLMQFFKHESCGQCTPCRSGTEK 486 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 M+ +++ A+ ++D + + +IC LG AA+ P+ ++K F Sbjct: 487 MVSLLKDPNWDKAKIADLDAV------MRSASICGLGQAASNPVASVLKFF 531 >gi|170698430|ref|ZP_02889503.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10] gi|170136683|gb|EDT04938.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10] Length = 525 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 143/409 (34%), Positives = 217/409 (53%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + S Y+V NADE + GT DR IM +P+ LIEG +IA GA Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGITTGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A+ +G LG G+ D+ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERVLGSGHAFDLHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ + GG G A + GG LP Q Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQWD 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 397 -VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|254563762|ref|YP_003070857.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit beta [Methylobacterium extorquens DM4] gi|254271040|emb|CAX27047.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta subunit [Methylobacterium extorquens DM4] Length = 519 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 142/391 (36%), Positives = 214/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L+ + I+ +V+ SGLRGRGGAGF G+KW+ + SD+ Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAEGIVAQVRDSGLRGRGGAGFQAGIKWNTVMLAQSDQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG IA+ A GA+ +IY R E+ + ++L+ Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGANRGYIYCRSEYPQSFKTLRD 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV + VP IL GA Y+ +G + GT ++G++ +E + Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIKQGGLIEYA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ++IE GG G + AV GG P ++ +DY+ + +G Sbjct: 356 FGITIRQVIEDFGGGTMSGRP-VRAVQVGGPLGAYFP-DELLDTPLDYEAMAAKKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G + M++++ GI + + L Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I NF Sbjct: 474 VADLCEIMTDGSLCAMGGLTPMPVMSAITNF 504 >gi|39933810|ref|NP_946086.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009] gi|39647657|emb|CAE26177.1| NAD-dependent formate dehydrogenase beta subunit [Rhodopseudomonas palustris CGA009] Length = 518 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 215/392 (54%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D + G + +++ L+ D II++V SGLRGRGGAGF TG KW + + + Sbjct: 115 RSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE + GT DR +M +P +IEG IA A+GA +IY+R E+ E++ Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATKGYIYIRSEYPHAVEAMN 233 Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA++ +G LG + D DI V GAGAYICGEET++LESLEGK+G R KPP P Sbjct: 234 AAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+G PT +NNV + + VP IL GA Y+ G +RGTK + G++ + E Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGTKPIQLGGNIKHGGLFEV 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT EL+++ GG G + AV GG P + DY+ +G Sbjct: 354 AFGITLGELVDEIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 V+V D + D+ K F HESCG+CTPCR G+ +++++ G I Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGAETVDKIIAGDRPAANIA 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++ ++ ++CALG A P+ + +F Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503 >gi|172059963|ref|YP_001807615.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6] gi|171992480|gb|ACB63399.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6] Length = 525 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + S Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+ A+ +G LG + LG + D+ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHV-LGSAHAFDLHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ + GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] Length = 632 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 208/363 (57%), Gaps = 8/363 (2%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW+ + +D+ YL+ N DE +PG DR I+ PH+++EG +IA+ AIGA Sbjct: 198 FPSGKKWALTLRQQADK-KYLICNGDEGDPGAFMDRSILEGNPHSVVEGMMIAARAIGAE 256 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++YVR E+ E ++ A+D GLLG + G DI V GAGA++CGE +A+ Sbjct: 257 AGYVYVRAEYPLAVERIRKAIDAARELGLLGEDLFGTGACFDIKVMEGAGAFVCGEASAM 316 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+ G +G PR KPP A GL+ PT VNNVE++A VP +LR+G+ Y G + G Sbjct: 317 VASIMGGRGMPRPKPPRTAEKGLWDKPTVVNNVETLATVPLVLRKGSKGYRTVGTSGSPG 376 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI---RGGWDN--LLAVIPGGSSVPCL 293 TK F+++GHV +E T E+I + GG+ +G DN AV GG S CL Sbjct: 377 TKTFALTGHVANTGLIEVPFGTTLREIIFEIGGGVLDEKGNVDNDAFKAVQIGGPSGGCL 436 Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353 + +D+D L +G+ +G+ ++VM+RST +++ F + ESCG+C PCRE Sbjct: 437 TREHLD-IPLDFDSLGGIGAMVGSGGLVVMNRSTCMVQVARFFMQFTQAESCGKCVPCRE 495 Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 GT M+ +++ +++G A + I LL + + + ++C LG AA P+ ++ FR E Sbjct: 496 GTRQMLDLLDDIIEGRADESTIPLLESLCRTVARGSLCGLGKAAPSPVLSTLRYFRQEYE 555 Query: 414 ERI 416 + Sbjct: 556 SHV 558 >gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum] Length = 617 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 150/423 (35%), Positives = 233/423 (55%), Gaps = 9/423 (2%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 Q +I T G+ S+ D ++ + + K L + ++ +V SGLRGRGG GF T Sbjct: 135 QVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGGGFPT 194 Query: 63 GMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHC 120 G+KWS K S P Y+V NADE +PG DR ++ +PH ++EG +IAS+A+G A Sbjct: 195 GLKWSLTQK--SPGPEKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGGAKK 252 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY R E+ L+ A+++ A LG N G DI + GAGAY+CGEETALL Sbjct: 253 GYIYCRAEYPLAIRHLRKAIEDAKAHNFLGENILGTGLCFDIEIKEGAGAYVCGEETALL 312 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+ G++G P KPPFPA G++G P+ +NNVE++ + I+ G WY+ +G E +GT Sbjct: 313 ASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGDWYASYGSEKTKGT 372 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K F+++G + +E E+I GG+ A GG S C+P + Sbjct: 373 KTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVDGLD 432 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + D++ + G+ +G+ ++VMD + I+ F + ESCG+CTPCR G+ M+ Sbjct: 433 TPV-DFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSKIML 491 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ +G Q+ ++D L +S ++ ++C LG AA P+ I+ FR E I + Sbjct: 492 DILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI-RD 550 Query: 420 HRC 422 RC Sbjct: 551 KRC 553 >gi|107022110|ref|YP_620437.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia AU 1054] gi|116689055|ref|YP_834678.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia HI2424] gi|105892299|gb|ABF75464.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia AU 1054] gi|116647144|gb|ABK07785.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia HI2424] Length = 525 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + G + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQARAAQ-KYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+AA+ +G LG + LG + ++ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ Y VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRHGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|331696855|ref|YP_004333094.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] gi|326951544|gb|AEA25241.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] Length = 499 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 210/368 (57%), Gaps = 6/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ V SGLRGRGGAGF TG+KW + + S ++ NADE + GT DR ++ +P Sbjct: 131 VVTAVTDSGLRGRGGAGFPTGVKWKTVAQ-ASSAVKFVCCNADEGDSGTFADRMLLEGDP 189 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDI 161 TL+ G IA +A+GA ++YVR E+ +++ A+ G LG S G+ D+ Sbjct: 190 FTLLCGMTIAGYAVGASEGYVYVRSEYPDAVAAVRTAIVAARERGWLGDSVLGSGFAFDV 249 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V GAGAYICGEET++LESLEGK+G R KPP PA GL+G PT VNNV S+A VPTIL Sbjct: 250 HVRVGAGAYICGEETSMLESLEGKRGTVRPKPPIPALEGLFGRPTVVNNVLSLASVPTIL 309 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G Y+ G +RGT++F + G+V VE + I+ EL+E GG G + Sbjct: 310 ADGPQAYAALGVGRSRGTQVFQLGGNVARGGVVETAFGISLGELVETFGGGTLSGR-PVR 368 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FY 340 AV GG LP Q MDY+ G+ +G V+V D + D + A+ R ++ F Sbjct: 369 AVQVGGPLGAYLPVEQFD-LPMDYEAFAASGAMVGHGGVVVFDDTVD-MSAMARFAMEFC 426 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+CTPCR G + ++R+ G ++ + LL ++ + + ++CA+G P Sbjct: 427 AEESCGRCTPCRIGAVRGVETIDRIRAGEDREANLVLLEDLCELMTDGSLCAMGGLTPLP 486 Query: 401 IQGLIKNF 408 ++ I++F Sbjct: 487 VRSAIRHF 494 >gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] Length = 609 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 138/382 (36%), Positives = 206/382 (53%), Gaps = 19/382 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ S LRGRGGAGFS G+KW D Y++ NADE EPGT KDR I+ P Sbjct: 208 VIDATSTSKLRGRGGAGFSAGLKWRLCHDAAGDT-KYVICNADEGEPGTFKDRVILTESP 266 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS----NSKLGYD 158 + G +IA +AIGA +Y+R E+ + L+ ++ LLG+ N K +D Sbjct: 267 EQVFAGMIIAGYAIGAREGILYLRYEYRYLVDYLEKTLNSLRERNLLGAKIGGNDKFSFD 326 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + I GAGAYICG+E+AL+ES EGK+G PR+KPPFP + G GCPT VNNVE++A V Sbjct: 327 IRI--QLGAGAYICGDESALIESCEGKRGTPRVKPPFPVHQGFMGCPTAVNNVETLANVA 384 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I +GA WY G + GT+L S+SG V P E I+ +++E + G + Sbjct: 385 RIFEKGARWYESMGTAESAGTRLISVSGDVEKPGIYEIEWGISLKDVLE-----LVGARN 439 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +A I G S C+ A + + Y L GS ++V ++++ + R Sbjct: 440 PRVAQISGPSG-ECVSAAKDGNRVFSYKDLSCNGS------LMVFSYERNLLEIVRRFIH 492 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ ESCG CTPCR G + + +++G A ++++D + E + I G + C LG + Sbjct: 493 FFMEESCGICTPCRAGNVELYNKVSLIIEGRAVEQDLDEIVEWANIIRGSSRCGLGTTSP 552 Query: 399 WPIQGLIKNFRPLIEERIDQYH 420 PI ++ F ++++ H Sbjct: 553 KPIITSMQAFPEEYKQKLVTQH 574 >gi|192289232|ref|YP_001989837.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] gi|192282981|gb|ACE99361.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] Length = 518 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 215/392 (54%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D + G + +++ L+ D II++V SGLRGRGGAGF TG KW + + + Sbjct: 115 RSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE + GT DR +M +P +IEG IA A+GA +IY+R E+ E++ Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATRGYIYIRSEYPHAVEAMN 233 Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA++ +G LG + D DI V GAGAYICGEET++LESLEGK+G R KPP P Sbjct: 234 AAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+G PT +NNV + + VP IL GA Y+ G +RGTK + G++ + E Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGTKPIQLGGNIKHGGLFEV 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT EL+++ GG G + AV GG P + DY+ +G Sbjct: 354 AFGITLGELVDEIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 V+V D + D+ K F HESCG+CTPCR G+ +++++ G I Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGAETVDKIIAGDRPAANIA 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++ ++ ++CALG A P+ + +F Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503 >gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] Length = 594 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 159/424 (37%), Positives = 245/424 (57%), Gaps = 14/424 (3%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62 + R N + +++ D + + ++K+L+ RD +I E+ ASGLRGRGG GF T Sbjct: 114 ERRALKNCGVIDPENIDDFLKNDGYKGIEKVLKTMSNRD-VIKEIFASGLRGRGGGGFLT 172 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +++ Y+V NADE +PG DR I+ +PH++IEG +IA +AIGA Sbjct: 173 GIKWEIASNIEAEQ-KYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKGL 231 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ L A++ G LG N LG ++ DI + GAGA++CGEETAL+ Sbjct: 232 VYIRAEYPLAIHRLSVAIESARKKGFLGKNI-LGSDFEFDIELKFGAGAFVCGEETALIH 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G+P KPP+PA G + PT VNNVE++ VP IL G W+ G E + GTK Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWNKPTVVNNVETLVNVPGILLHGKEWFREVGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N VE M IT E+I + GGI+ AV GG S CL + Sbjct: 351 VFALAGKINNVGLVEVPMGITLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDLDT 409 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359 I D+D L + GS +G+ ++VMD D + AI + + F ESCG+CTPCR G + Sbjct: 410 PI-DFDTLSKKGSIMGSGGMVVMDED-DCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLY 467 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF-RPLIEERIDQ 418 +++++ +G ++ LL E+S+ I+ ++C LG +A P+ + F +E +D+ Sbjct: 468 EMLDKITQGRGTLEDLQLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVDK 527 Query: 419 YHRC 422 RC Sbjct: 528 --RC 529 >gi|163853801|ref|YP_001641844.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1] gi|163665406|gb|ABY32773.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1] Length = 519 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 213/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L+ G + I+ +V+ SGLRGRGGAGF G+KW+ + SD+ Sbjct: 117 SVEDYRAHGGYRGLEVALKLGAEGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG IA+ A GA +IY R E+ + ++L+ Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV + VP IL GA Y+ +G + GT ++G++ +E + Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ++IE GG G + AV GG P + +DY+ + +G Sbjct: 356 FGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFP-DDLLDTPLDYEAMAAKKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G + M++++ GI + + L Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I NF Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504 >gi|171316163|ref|ZP_02905387.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5] gi|171098672|gb|EDT43467.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5] Length = 525 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 219/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + S Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+ A+ +G LG LG + D+ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERV-LGSAHAFDLHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ + GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|255659120|ref|ZP_05404529.1| protein HymB [Mitsuokella multacida DSM 20544] gi|260848565|gb|EEX68572.1| protein HymB [Mitsuokella multacida DSM 20544] Length = 416 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 224/396 (56%), Gaps = 4/396 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ M+ G ++ + K + + I + + A ++GRGGA + G KWS V +R Sbjct: 18 SIGSYMNVGGFEALRKAVTMDPEEITDLLTAVKIKGRGGAEYPLGRKWSQARAVRGER-K 76 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 ++ NADE E T KDR+++ H+P LIE +IA++ +GA FIY+R E+ R L Sbjct: 77 VVICNADEGETTTFKDRELICHDPFNLIEAMIIAAYVVGASDGFIYMRAEYACFRPLLLN 136 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ + G LG+N G+D DI ++ GAGAY+CGE TAL+ S+EGK G+PR+KPPF Sbjct: 137 AIRQAKNYGFLGTNILGRGFDFDIHLYSGAGAYVCGEGTALIRSIEGKAGRPRMKPPFIK 196 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G++ PT +NNVE++++VP +L Y+ G + GTKL S++G+VN+P E Sbjct: 197 VSGVFARPTCLNNVETLSLVPHLLLDEEGVYASCGSGESIGTKLVSVAGNVNHPGVFEIP 256 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++ + GGI+ D + +I G + + + Y+ L+ G +G+ Sbjct: 257 FGTTVREILYELAGGIQ--HDRKIRLIQFGGASGKIADDSILDTPYTYEDLRAAGVMVGS 314 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D T ++ + F+ ESCGQCTPCREG + +++++ G A + +I + Sbjct: 315 GGMLVIDERTSVLDFLRMNQEFFWEESCGQCTPCREGNLHIKIILDKMATGTATREDIAI 374 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + ++++ + ++C LG+ A + +K F L + Sbjct: 375 MMKIARVMSMSSLCGLGETAQNSLLSAMKVFPDLFD 410 >gi|119504734|ref|ZP_01626812.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium HTCC2080] gi|119459339|gb|EAW40436.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium HTCC2080] Length = 526 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 149/399 (37%), Positives = 217/399 (54%), Gaps = 15/399 (3%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK---------- 71 D +S G + + LE ++ V SGLRGRGGAGF TG+KW + + Sbjct: 110 DYVSHGGMAGLQRALEMSPMSVVQAVTESGLRGRGGAGFPTGIKWQTVAEQAPVPHKGDP 169 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 V + R Y+ VNADE + GT DR +M +P L+EG IA+ A+GA IY+R E+ Sbjct: 170 VDAPRHKYICVNADEGDSGTFADRMLMEGDPFCLLEGMAIAAHAVGADRGMIYLRSEYPA 229 Query: 132 ERESLQAAVDECYASGLLGSNSKLGY--DVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + A+++ A G LG S LG + D+ + GAG+Y+CGEETA+LESLEG++G Sbjct: 230 AIAVMSDAIEKARARGWLG-ESILGSSCNFDVTIRVGAGSYVCGEETAMLESLEGRRGTV 288 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R KPP PA GL+G PT +NNV +IA VP+IL RG Y+ G+E +RGT++F ++G++ Sbjct: 289 RAKPPLPAIEGLFGTPTVINNVLTIASVPSILARGPEAYAELGQERSRGTQVFQLAGNIA 348 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 VE + I+ ELI G + G L AV GG L A ++ M Y+ L Sbjct: 349 RGGIVEVAFGISAHELIFGLGQGTKSG-KPLKAVQVGGPLGAYLTADALQ-VPMAYESLA 406 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 G+ LG ++V D S D+ + F ESCG+CTPCR G + V++ L+ Sbjct: 407 AEGAMLGHGGLVVFDDSVDMAEQARFAMEFCVEESCGKCTPCRIGAVRGVEVIDDLLASD 466 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 A + LL ++ + ++CA+G P+ + F Sbjct: 467 APENAEQLLRDLCDVMTQGSLCAMGGLTPQPVLSALDQF 505 >gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] Length = 561 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 220/393 (55%), Gaps = 21/393 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++LS + G + + + +G DW + ++ ASGLRG GGAGF +G KW F+ + Sbjct: 184 ETLSAYLEEGGYSELKALRAEG-DWEEVQEKILASGLRGLGGAGFPSGRKWGFV--RANP 240 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL VN DE EPGT KDR + EPH +EG +IA++A+ A FIY+R E+ + Sbjct: 241 GPRYLAVNGDEGEPGTFKDRVYIEGEPHVFLEGVLIAAWAVEAERCFIYMRDEYPGIIDI 300 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L+ + +G++ + I + GAGAYICGEE+A++ES+EGK+G PR +PP+ Sbjct: 301 LRKEIRALEEAGIVEKDY-------IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPPY 353 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VG++ PT V+NVE++ V I R G S + +G + +S+SG V P Sbjct: 354 VAQVGIFDRPTLVHNVETLYWVSKICREGPQILSSVEKNGRKGLRSYSVSGRVKSPGVHL 413 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ++I K GG+ G L A PGG S LPA M +D+D L+ GS + Sbjct: 414 LPAGSTIMDII-KAAGGMLDG-HRLKAYQPGGPSSGLLPA-SMNDIPLDFDTLQPHGSFI 470 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V+ + A + F++ ESCGQCTPCR G +++M +A K + Sbjct: 471 GSAAVVVLSDQDSVRDAALNMLQFFEDESCGQCTPCRVGCEKAVKLM------MADKWDQ 524 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL E+ + + +IC LG AA PI+ IK+F Sbjct: 525 SLLEELCQTMTDASICGLGQAAPNPIRLTIKHF 557 >gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 596 Score = 239 bits (609), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 147/385 (38%), Positives = 228/385 (59%), Gaps = 4/385 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E + +I+ +K SGLRGRGG GF +G+KW F K D Y+ NADE +PG D Sbjct: 147 LTEMKPEEVIDIIKRSGLRGRGGGGFPSGLKWEFTAKAEGDE-KYVACNADEGDPGAFMD 205 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R ++ +PH +IE IA++A GA+ ++Y+R E+ E L+ A+ + +GLLG N Sbjct: 206 RSVLEGDPHVIIEAMAIAAYAAGANRGYVYIRAEYPIAVERLEIAIKQARENGLLGKNIF 265 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 +D ++ + GAGA++CGEETAL+ S+EGK+G PR +PPFPA+ G++ PT +NNVE+ Sbjct: 266 GTEFDFELEIRLGAGAFVCGEETALINSIEGKRGMPRPRPPFPAHKGIWNKPTLLNNVET 325 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A VP I+ GA W++ G E ++GTK+F++ G +N +E +M T E+I GGI Sbjct: 326 YANVPQIILNGAEWFASMGTEKSKGTKVFALGGKINNTGLLEVAMGTTLREVIYDVGGGI 385 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G AV GG S C+ A + I DYD L +GS +G+ +IVMD ++ Sbjct: 386 PNG-KAFKAVQTGGPSGGCITAEHLDTPI-DYDNLIALGSMMGSGGMIVMDEDNCMVDIA 443 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 F ESCG+C PCR GT M+ +++++ +G + ++D L ++++I+ ++C L Sbjct: 444 RFFLDFTVEESCGKCPPCRIGTKRMLELLDKITEGKGELEDLDKLERLAESIKVASLCGL 503 Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418 G A P+ +K FR E + + Sbjct: 504 GQTAPNPVLSTLKYFRDEYEAHVKE 528 >gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] Length = 561 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 149/392 (38%), Positives = 218/392 (55%), Gaps = 31/392 (7%) Query: 19 SLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +L D + G+W++V DKIL ASGLRG GGAGF +G KW F+ + P Sbjct: 197 ALKDLRADGNWEDVQDKIL------------ASGLRGLGGAGFPSGKKWGFV--RANAGP 242 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ L Sbjct: 243 RYLAVNGDEGEPGTFKDRYYLERVPHQFLEGMLIAAWAVEAETCFIYMRDEYPAVLHILA 302 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + A+G++ + GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF A Sbjct: 303 EEIKALEAAGIV----EEGY---IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPPFVA 355 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VG++G PT V+N+E++ V I R G S +G + +S+SG + P Sbjct: 356 QVGVFGQPTLVHNIETLHWVSRICREGPEILSSVEHNGRKGLRSYSVSGRIAKPGVFLLP 415 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE GG+ G A PGG S LPA + +D+D L+ +G+ +G+ Sbjct: 416 AGSTITEIIEA-AGGMAEG-HVFKAYQPGGPSSGLLPA-SINDVPLDFDTLQPLGTFIGS 472 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAV+V+ A + F++ ESCGQCTPCR G +++M+ A + +L Sbjct: 473 AAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADAWDQEL 526 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++S + +IC LG AA PI+ ++ +F+ Sbjct: 527 LTDLSTAMVDASICGLGQAAPNPIKMVMTHFK 558 >gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] Length = 624 Score = 238 bits (608), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 152/417 (36%), Positives = 233/417 (55%), Gaps = 5/417 (1%) Query: 5 QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI G + +S+ + M+ G + + K L + +I EV+ SGLRGRGG GF Sbjct: 140 QTRIVLEQCGNIDAESVEEYMAAGGFSALKKALFAMTPEAVIAEVEFSGLRGRGGGGFPA 199 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW + + Y+V N DE +PG D +M +P LIEG ++A +A+GA F Sbjct: 200 GRKWRQVAAHKEEPLKYIVCNGDEGDPGAFMDGSVMEGDPCRLIEGMMLAGYAVGASEGF 259 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L+ A+ + GLLG S G+ + ++ GAGA++CGE +AL S Sbjct: 260 IYVRAEYPLSVARLRQAIGQMEERGLLGDSILGTGFSFHLHINRGAGAFVCGEGSALTAS 319 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G PR+KPP + GL+G PT +NNVE+ A +P I+ G W+ G EN+ GTK Sbjct: 320 IEGHRGMPRVKPPRTVDQGLWGKPTVLNNVETYANLPGIIVNGGKWFRTIGTENSTGTKT 379 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++G + VE M T +I CGG++ G + AV GG S CL + Sbjct: 380 FSVTGCIENTGLVEVPMGTTLRTIIYDICGGLKEGSE-FKAVQIGGPSGGCLTEEHLDEP 438 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D +++ +G+ ++VMD+ T +++ F + ESCG+C PCREGT M+ + Sbjct: 439 -LDFDSVQKFNVIIGSGGLVVMDKHTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEI 497 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +ER+V+G + +I+ L +++ I +C LG +A P+ IK FR E I++ Sbjct: 498 LERIVEGKGEPDDIERLEQLADMISNTALCGLGKSAPLPVISTIKAFRKEYLEHINE 554 >gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus str. Bath] gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus str. Bath] Length = 610 Score = 238 bits (608), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 213/401 (53%), Gaps = 27/401 (6%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRP--------- 77 + +++ L R+ + E++ S LRGRGGAGF+T KW F P+ + P Sbjct: 189 EALERTLALDRETMFGEIETSQLRGRGGAGFNTAWKWRFCYEGPETAAVCPPGQPAAGIE 248 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE EPGT KDR +++ + EG + ++ +GA F+Y+RGE++ + L+ Sbjct: 249 RYVVCNADEGEPGTFKDRVLLQSCADQVFEGMTVCAYLVGAKQGFLYLRGEYLYLHDQLE 308 Query: 138 AAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A + GLLG + + G+D DI + GAGAYICGEE+AL+ESLEG +G PR +PP+ Sbjct: 309 AVLAARRRHGLLGKSILGREGFDFDIEIRLGAGAYICGEESALIESLEGNRGVPRNRPPY 368 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P G G PT VNNVE+ I G W++ G E ++GTKL SI G P E Sbjct: 369 PVTHGYLGKPTVVNNVETFFAAAAIAVHGGEWFAEVGTEKSKGTKLLSICGDCARPGIYE 428 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 +T +++E CG ++L V GG S L + + Y+ L GS Sbjct: 429 YPFGVTIRQVLED-CGAA-----DVLGVQIGGPSGTFLSDKECDRKLA-YEDLATGGS-- 479 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 IV DR+ D+I + F+ HESCG CTPCR GT + +++++ +G ++ Sbjct: 480 ----FIVFDRTRDVIGIARNFTHFFAHESCGFCTPCRVGTALLKNLLDKIAEGHGATGDL 535 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L + + + + C LG AA PI ++ + + + R+ Sbjct: 536 AELSRLGRFVRSASHCGLGQTAANPILSTLERYPEIYQARL 576 >gi|316932167|ref|YP_004107149.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] gi|315599881|gb|ADU42416.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] Length = 518 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 213/392 (54%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D + G + +++ L+ D II++V SGLRGRGGAGF TG KW + + + Sbjct: 115 RSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE + GT DR +M +P +IEG IA A+GA +IY+R E+ E++ Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATRGYIYIRSEYPHAVEAMN 233 Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++ +G LG + D DI V GAGAYICGEET++LESLEGK+G R KPP P Sbjct: 234 VAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+G PT +NNV + + VP IL GA Y+ G +RGTK + G++ + E Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGTKPIQLGGNIKHGGLFEV 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT ELI+ GG G + AV GG P + DY+ +G Sbjct: 354 AFGITLGELIDDIGGGTASGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 V+V D + D+ K F HESCG+CTPCR G+ +++++ G I Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGAETVDKIIAGDKPAANIA 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++ ++ ++CALG A P+ + +F Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503 >gi|238026515|ref|YP_002910746.1| formate dehydrogenase subunit beta [Burkholderia glumae BGR1] gi|237875709|gb|ACR28042.1| Formate dehydrogenase, beta subunit [Burkholderia glumae BGR1] Length = 524 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 141/393 (35%), Positives = 217/393 (55%), Gaps = 8/393 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G D + + L E+ SGLRGRGGA F G+KW + + + + Sbjct: 120 SIDDYLAHGGLDGLKRALTLDGAAACEELIESGLRGRGGAAFPAGIKWRTVRQAQATQ-K 178 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P+ LIEG +IA GA IYVR E+ +L Sbjct: 179 YVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVVTGATRGHIYVRSEYPHAIAALNE 238 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ A+G LG + S LG++++ V GAGAY+CGEETALLESLEGK+G R KPP Sbjct: 239 AIARARAAGWLGESVLGSGLGFELE--VAKGAGAYVCGEETALLESLEGKRGVVRAKPPL 296 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNV ++A P I RGA++Y +G +RGT F ++G++ VE Sbjct: 297 PALEGLHGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGTLPFQLAGNIRQGGLVE 356 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +T EL+ + GG G A + GG LP Q +DY+ +G+ + Sbjct: 357 LAFGVTLRELLFEFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVV 414 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G +++ D ++++ + F ESCG+CTPCR G+ + + R+ G ++++ Sbjct: 415 GHGGIVLHDDTSNLAELAEYAMQFCVLESCGKCTPCRIGSTRGVETIARIRGGDTSEKQV 474 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 475 HLLRDLCDTMMAGSLCAMGGMTPYPVLSALDHF 507 >gi|167739672|ref|ZP_02412446.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 14] Length = 521 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 142/392 (36%), Positives = 215/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP GQ +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPEGQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + R+ G +R++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|206561321|ref|YP_002232086.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia cenocepacia J2315] gi|198037363|emb|CAR53296.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia cenocepacia J2315] Length = 525 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + G + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQARAAQ-KYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+AA+ +G LG + LG + ++ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELQVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|114765413|ref|ZP_01444528.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Pelagibaca bermudensis HTCC2601] gi|114542256|gb|EAU45286.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Roseovarius sp. HTCC2601] Length = 506 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 147/391 (37%), Positives = 213/391 (54%), Gaps = 6/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL + G + + + + II+EVK SGLRGRGGAGF TG+KW + +DR Sbjct: 109 SLEQYEAHGGLAGLRRAIGMTAEAIIDEVKLSGLRGRGGAGFPTGIKWDTVRMAHADR-K 167 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A F+Y+R E+ L Sbjct: 168 YIVCNADEGDSGTFADRMIMEGDPFCLIEGMAIAGLGCHAEKGFVYLRSEYPDAIAVLSR 227 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ A+G+LG++ G+ D+ V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 228 AIEIARAAGVLGADVLGSGHAFDMEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 287 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNV S+A VP I +GA Y+ FG ++GT I+G+V + E + Sbjct: 288 LEGAFGKPTVVNNVISLATVPVIFEKGAEHYANFGLGRSKGTIPLQIAGNVRHGGLFETA 347 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ +++E GG G + AV GG L Q Y+ G+ +G Sbjct: 348 FGMSLGQIVEDLGGGTASG-RAVKAVQVGGPLGAYLSPDQFD-TPFGYEEFDGQGALIGH 405 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D S D++ F ESCG+CTPCR G + ++R+ G A+ I L Sbjct: 406 AGLVVFDDSADMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETLDRIAAGDAEA--IPL 463 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++ ++CALG +P+ ++ F Sbjct: 464 LIDLCETMQDGSLCALGGFTPYPVMSALRLF 494 >gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 558 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 130/350 (37%), Positives = 203/350 (58%), Gaps = 19/350 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + + P +L +N DE EPGT KDR + +PH L+EG ++A+ AI A Sbjct: 221 FPTGTKWKIVHDLPG--PKFLTINGDEGEPGTFKDRYHLESDPHRLLEGALVAAHAISAD 278 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ E L ++ ++G++ + +DI + GAGAYICGEE+A++ Sbjct: 279 RIYLYMRDEYPAVLEILNTEIEALRSAGIITT-------IDIEIRRGAGAYICGEESAMI 331 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PPF A VGL+G PT +N+E++ + I+ +G W++ GR ++G Sbjct: 332 ESIEGKRGLPRHRPPFIAQVGLFGRPTLNHNIETLFWIRDIVEKGPEWFAEQGRRGHKGF 391 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + FS+SG V P IT +EL+E++CGG+ G +PGG+S LPA + Sbjct: 392 RSFSVSGRVREPGVKLAPAGITMNELLEEYCGGMEDGH-IFKGYLPGGASGGILPA-SLA 449 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L + G +G+ A++V D+ A L F+KHESCGQCTPCR GT Sbjct: 450 DEPLDFGTLDKHGCFIGSHAIVVFSDQDDMRDAALNLMRFFKHESCGQCTPCRSGT---- 505 Query: 360 RVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 E++ K +A + D + ++ + +IC LG AA+ P+ ++K F Sbjct: 506 ---EKMEKLLADGDWDTDKIADLDAVMRSASICGLGQAASNPVASVLKFF 552 >gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1] gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Mycobacterium vanbaalenii PYR-1] Length = 603 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 138/394 (35%), Positives = 206/394 (52%), Gaps = 21/394 (5%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNA 84 H + + L + ++ + SGLRG GGAGF TG+KW ++C P Y++ NA Sbjct: 193 HAMTLKRCLANTPEQTVDMISESGLRGFGGAGFRTGLKW----RLCRAAPGEDKYVICNA 248 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE EPGT KDR ++ P + G VIA+++IGA +Y+R E+ LQ + E Sbjct: 249 DEGEPGTFKDRALLTRSPKDVFLGMVIAAYSIGARDGILYLRAEYAYLARYLQRQLQELR 308 Query: 145 ASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 GLLG++ G+D DI + GAGAYICGEE+AL+ES EG +G PRLKPP+P G Sbjct: 309 DDGLLGADIGGLPGFDFDIRIQLGAGAYICGEESALIESCEGNRGTPRLKPPYPIQEGYL 368 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PTTVNNVE+ + GA W+ G ++ GT+L S++G + P E IT Sbjct: 369 GKPTTVNNVETFVAASRVTAEGAEWFRSMGTADSAGTRLLSVAGDCSAPGVYEVEWGITL 428 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 D+++ G + AV GG S C+ + Y+ + G AV + Sbjct: 429 DDVLAMV------GAPDARAVQIGGPSGECVSVAVDGRRRIAYEDIPCNG------AVTI 476 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 + + D+++ + + F+ ESCG C PCR GT + M R++ G ++++D + Sbjct: 477 FNATRDLLECVTDYTKFFADESCGICVPCRAGTVDLHDTMRRILAGNGTRQDLDDVAGRG 536 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 I + C LG AA PI + F + +ER+ Sbjct: 537 ALIRSTSRCGLGATAANPILTTLTKFPEMYQERL 570 >gi|149203817|ref|ZP_01880786.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035] gi|149142934|gb|EDM30976.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035] Length = 502 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 147/390 (37%), Positives = 210/390 (53%), Gaps = 6/390 (1%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L D + G + + + I+ EV SGLRGRGGAGF TG+KW + + + + Y Sbjct: 106 LEDYAAHGGLVGLRRAIAMDAHDIVAEVTKSGLRGRGGAGFPTGIKWKTVQEAQAPQ-KY 164 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR IM +P +L+EG IA +GA ++Y+R E+ + A Sbjct: 165 IVCNADEGDSGTFADRMIMEGDPFSLVEGMAIAGIGVGATRGYVYLRSEYPDAIAVMCRA 224 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 V+ +G+LGS+ G+ D+ + GAGAY+CGEETALL SLEGK+G R KPP PA Sbjct: 225 VEIARGAGVLGSDVLGSGHAFDMEIRVGAGAYVCGEETALLNSLEGKRGVVRAKPPLPAL 284 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 G G PT VNNV S+A VP I RGA Y+ FG +RGT I+G+V E + Sbjct: 285 EGFLGRPTVVNNVISLATVPVIFERGAQHYADFGLGRSRGTVTLQIAGNVARGGLFETAF 344 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT E++ GG G + AV GG +P A + Y+ L G LG A Sbjct: 345 GITLGEVVNDLGGGTMTGR-PVKAVQVGGPLGAYIPVSNFD-APLGYEELDAKGGLLGHA 402 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 ++V D S D+++ F ESCG+CTPCR G + ++R+ G I LL Sbjct: 403 GLVVFDDSADMLQMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAG--DGTAIPLL 460 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ + ++ ++CALG +P+ + +F Sbjct: 461 TDLCETMKDGSLCALGGFTPFPVMSALTHF 490 >gi|84686201|ref|ZP_01014096.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Maritimibacter alkaliphilus HTCC2654] gi|84665728|gb|EAQ12203.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacterales bacterium HTCC2654] Length = 499 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/388 (37%), Positives = 212/388 (54%), Gaps = 12/388 (3%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 + G +++ L+ ++ E KASGLRGRGGAGF TG+KW + K +D+ Y+V NA Sbjct: 108 AHGGLTGLERALDMDGLGVVEEAKASGLRGRGGAGFPTGIKWETVAKAEADQ-KYIVCNA 166 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE + GT DR IM +P +LIEG IA +GA ++Y+R E+ ++AAV+ Sbjct: 167 DEGDSGTFADRMIMEGDPFSLIEGMAIAGVGVGATKGYVYLRSEYPDAIRVMKAAVEVAR 226 Query: 145 ASGLLGSNSKLG----YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 A+GLLG+ S LG +D++I V GAGAY+CGEET+LL SLEGK+G R KPP PA G Sbjct: 227 ANGLLGA-SLLGKGPAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLPALEG 283 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 G PT VNNV S+A +P I +GA+ Y+ FG ++GT I+G+V Y E + + Sbjct: 284 FLGKPTVVNNVISLATIPVIFEKGAAHYANFGLGRSKGTIPLQIAGNVKYGGLYEIAFGL 343 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 E++ GG R G + + G + A Y+ G +G A + Sbjct: 344 PLGEIVNDIAGGTRSGQP--VKAVQVGGPLGAYFAPHQFDTPFGYEEFDGAGGLIGHAGL 401 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 V D + D++ F ESCG+CTPCR G + ++R+ G +E LL + Sbjct: 402 TVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAGDMAAKE--LLTD 459 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + + ++CALG +P+ + F Sbjct: 460 LCETMTDGSLCALGGFTPYPVMSAMTLF 487 >gi|254252942|ref|ZP_04946260.1| NADH dehydrogenase [Burkholderia dolosa AUO158] gi|124895551|gb|EAY69431.1| NADH dehydrogenase [Burkholderia dolosa AUO158] Length = 524 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKYDGLAGLKNALALDGDAACEALIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTV-RHATAKQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+AA++ +G LG LG + ++ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIATLEAAIERAREAGWLGERV-LGSAHAFELHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GGPLGTYLPEHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + + +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYAAIDAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ +G +R+I LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRQGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|53720139|ref|YP_109125.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia pseudomallei K96243] gi|53724803|ref|YP_102258.1| formate dehydrogenase subunit beta [Burkholderia mallei ATCC 23344] gi|67642932|ref|ZP_00441683.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei GB8 horse 4] gi|76809707|ref|YP_334389.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei 1710b] gi|121600156|ref|YP_993894.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1] gi|124385181|ref|YP_001026955.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC 10229] gi|126450106|ref|YP_001079757.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC 10247] gi|166999708|ref|ZP_02265542.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei PRL-20] gi|167816880|ref|ZP_02448560.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 91] gi|226197836|ref|ZP_03793410.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|254176775|ref|ZP_04883432.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC 10399] gi|254192290|ref|ZP_04898779.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254203943|ref|ZP_04910303.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH] gi|254208923|ref|ZP_04915271.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU] gi|254260630|ref|ZP_04951684.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1710a] gi|254295606|ref|ZP_04963064.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 406e] gi|254360022|ref|ZP_04976292.1| formate dehydrogenase, beta subunit [Burkholderia mallei 2002721280] gi|52210553|emb|CAH36536.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei K96243] gi|52428226|gb|AAU48819.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC 23344] gi|76579160|gb|ABA48635.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei 1710b] gi|121228966|gb|ABM51484.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1] gi|124293201|gb|ABN02470.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei NCTC 10229] gi|126242976|gb|ABO06069.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei NCTC 10247] gi|147745455|gb|EDK52535.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH] gi|147750799|gb|EDK57868.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU] gi|148029262|gb|EDK87167.1| formate dehydrogenase, beta subunit [Burkholderia mallei 2002721280] gi|157805551|gb|EDO82721.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 406e] gi|157987485|gb|EDO95261.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160697816|gb|EDP87786.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC 10399] gi|225930024|gb|EEH26037.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|238524152|gb|EEP87587.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei GB8 horse 4] gi|243064206|gb|EES46392.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei PRL-20] gi|254219319|gb|EET08703.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1710a] Length = 521 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 142/392 (36%), Positives = 215/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP GQ +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPEGQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + R+ G +R++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] Length = 584 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/425 (36%), Positives = 243/425 (57%), Gaps = 9/425 (2%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 L +Q RI G+ + + + + + +++++ E + +I EVK +GLRGRGGAG Sbjct: 99 LKNQVRIVLKNCGIINPEKIEQYIDKDGYKALNRVVKEMTPNEVIEEVKIAGLRGRGGAG 158 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW K Y+V NADE +PG DR ++ +PH ++EG IA +AIGA Sbjct: 159 FPTWFKWDAARK-SKGEDKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGYAIGAK 217 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+ + LG S +G +D DI++ GAGA++CGEETA Sbjct: 218 KGYIYVRAEYPLAIERLKIAIKQAREKNYLG-KSIMGSSFDFDILIKTGAGAFVCGEETA 276 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G +G PT +NNVE+ A VP IL G ++ +G E ++ Sbjct: 277 LIASLEGERGMPRLKPPFPAQSGYFGKPTNINNVETYANVPWILVHGGKAFAAYGTEKSK 336 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M +T E+I GGI+G + AV GG S C+P + Sbjct: 337 GTKVFALAGKIKNGGLVEVPMGMTLREVIYGIGGGIKGDKE-FKAVQMGGPSGGCIPR-K 394 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + + G+ +G+ ++VMD +T ++ F ESCG+C CR GT Sbjct: 395 LLDTPVDYESINKTGAIMGSGGMVVMDENTCMVDMARFFLDFTCKESCGKCVYCRIGTKR 454 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G +ID+L E+ +++ ++C LG PI ++ F+ I Sbjct: 455 MLEILKKICSGEGSTEDIDILQELCISVKDGSLCGLGQTTPNPILTTLRYFKDEYIAHIK 514 Query: 418 QYHRC 422 H+C Sbjct: 515 D-HKC 518 >gi|124514246|gb|EAY55760.1| NADH dehydrogenase (Quinone) [Leptospirillum rubarum] Length = 453 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/420 (36%), Positives = 229/420 (54%), Gaps = 19/420 (4%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS + G ++ + ++L I E+K +GLRGRGG+GF T +KW KV Sbjct: 29 GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWE---KVAHH 85 Query: 76 R--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 R Y+V N E EPG+ KD ++ PH ++EG +IASFA+ A A ++V+ F R Sbjct: 86 RIREKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVRARKAILFVKDSFPRGI 145 Query: 134 ESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQP 189 ++L+ A DE G LG S+L D++I V G AYI GEETALLE+LEG+ Sbjct: 146 DALKKARDEAREEGFLGDRILGSELSLDLEIFV--GPSAYIAGEETALLEALEGRLPKPR 203 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 P +P + GLY CPT VNNVE+ A V I R GA W+ G + GT +FS++G V Sbjct: 204 PKPPGYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVK 263 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P VE + + L+E++ GG G + + + PGG S LPA + +DYD L+ Sbjct: 264 RPIVVELPLGTSLRTLVEEYAGGAPDG-ERIESFYPGGPSFGVLPAKDL-DTPLDYDALR 321 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +GSG+G+ VIV+ + + + FY+ SCGQC PCR GT + ++E G Sbjct: 322 ALGSGIGSGGVIVLSDKDCPVATARQFAAFYETGSCGQCPPCRIGTENLHEILELFENGK 381 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424 A + + + +S I+GR C L A+A+ ++ L+++F + +D + HR F Sbjct: 382 ASRENVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDGGCRRQHRTPF 441 >gi|89055050|ref|YP_510501.1| NADH dehydrogenase (quinone) [Jannaschia sp. CCS1] gi|88864599|gb|ABD55476.1| formate dehydrogenase beta subunit [Jannaschia sp. CCS1] Length = 500 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 150/396 (37%), Positives = 214/396 (54%), Gaps = 17/396 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL++ + G + + LE + I V SGLRGRGGAGF TG+KW+ + + +D P Sbjct: 104 SLAEYEAHGGLTGLRRALEMTPEQITTHVTESGLRGRGGAGFPTGIKWNTVRQ--ADGPQ 161 Query: 79 -YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE + GT DR IM +P LIEG VIA +GA +IY+R E+ E ++ Sbjct: 162 KYIVCNADEGDSGTFADRMIMEGDPFCLIEGMVIAGLGVGATKGYIYLRSEYPDAIEVME 221 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 +A++ + +LG ++ DI V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 222 SAIEITRENNVLGHVLHSEHEFDIEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 281 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV S+A VP I +GA Y+ FG ++GT I+G+VN+ E + Sbjct: 282 LEGFLGRPTVVNNVISLATVPVIFEKGAEHYASFGLGRSKGTMPVQIAGNVNHGGLFETA 341 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG-----AIMDYDGLKEMG 312 + EL+ GG G + AV GG P G G Y+ G Sbjct: 342 FGMPLGELVNDIAGGSATGRP-VKAVQVGG------PLGAYFGPEKFDTPFAYEPFDGAG 394 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G A V+V D S D++ F ESCG+CTPCR G + ++R+ +G A Sbjct: 395 GLIGHAGVVVFDDSADMLGMARFAMEFCAIESCGKCTPCRIGAVRGVETLDRIREGDATA 454 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I LL ++ + ++ ++CALG +P+ ++ F Sbjct: 455 --IPLLVDLCETMKDGSLCALGGFTPYPVMSALEQF 488 >gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 617 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 149/423 (35%), Positives = 232/423 (54%), Gaps = 9/423 (2%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 Q +I T G+ S+ D ++ + + K L + ++ +V SGLRGRGG GF T Sbjct: 135 QVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGGGFPT 194 Query: 63 GMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHC 120 G+KWS K S P ++V NADE +PG DR ++ +PH ++EG +IAS+A+G A Sbjct: 195 GLKWSLTQK--SPGPEKFVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGGAKK 252 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY R E+ L+ A+ + A LG N G DI + GAGAY+CGEETALL Sbjct: 253 GYIYCRAEYPLAIRHLRKAIQDAKAHNFLGDNILGTGLCFDIEIKEGAGAYVCGEETALL 312 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+ G++G P KPPFPA G++G P+ +NNVE++ + I+ G WY+ +G E +GT Sbjct: 313 ASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGEWYASYGSEKTKGT 372 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K F+++G + +E E+I GG+ A GG S C+P + Sbjct: 373 KTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVDGLD 432 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + D++ + G+ +G+ ++VMD + I+ F + ESCG+CTPCR G+ M+ Sbjct: 433 TPV-DFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSKIML 491 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ +G Q+ ++D L +S ++ ++C LG AA P+ I+ FR E I + Sbjct: 492 DILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI-RD 550 Query: 420 HRC 422 RC Sbjct: 551 KRC 553 >gi|170732343|ref|YP_001764290.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3] gi|254246011|ref|ZP_04939332.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184] gi|124870787|gb|EAY62503.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184] gi|169815585|gb|ACA90168.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3] Length = 525 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 144/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S+ D + G + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQARAAQ-KYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+AA+ +G LG + LG + ++ V GAG+Y+CGEETAL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELHVAKGAGSYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIVRIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504 >gi|124268893|ref|YP_001022897.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124261668|gb|ABM96662.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 520 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 220/409 (53%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ GL SL+D + W + + L +++EV SGLRGRGGA F Sbjct: 101 LAKQERLCFARMGLTDPLSLADYEAHEGWAGLRRALAMPDAAVVDEVLQSGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S + Y+V NADE + GT DR M +P+ LIEG IA+ A+GA Sbjct: 161 PTGIKWKTVMNTPSAQ-KYIVCNADEGDSGTYSDRMTMEGDPYMLIEGMTIAALAVGATR 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ +L A+ A+G LGS+ G + V AGAY+CGEETALL Sbjct: 220 GYVYVRSEYPHAIATLNDAIARAEAAGFLGSDVLGSGRAFHLQVRKAAGAYVCGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S A VP IL RGA+ Y +G + GT Sbjct: 280 ESLEGKRGIVRAKPPLPAIEGLFGQPTVINNVISFASVPLILARGAAHYRDYGVGRSMGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V VE++ +T EL+ GG G + AV GG +P + Sbjct: 340 LPIQLAGNVKRGGLVEKAFGVTLRELLYDFGGGTASG-RPIKAVQVGGPLGTYVPESKWD 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ G +G ++V D + D+ K F ESCG+CTPCR G+ + Sbjct: 399 -VPLDYEAYAAFGGVVGHGGIVVHDDTADMAKLARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++R+ + + ++ LL ++ + ++CA+G +P+ + ++ Sbjct: 458 EVIDRITANVNRPAQVKLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHY 506 >gi|89902039|ref|YP_524510.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118] gi|89346776|gb|ABD70979.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118] Length = 591 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 154/405 (38%), Positives = 226/405 (55%), Gaps = 25/405 (6%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 FT Y + SL R + ++ E+ + ++ ++ +GLRG GGAGF G KW Sbjct: 202 FTAHYAINLISLEAYRQRAGYALAAAVVNGEEPAEGVMAALEDAGLRGLGGAGFPAGRKW 261 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + + P + VN DE EPGT KDR + +PH +EG +IA+ G +IY+R Sbjct: 262 RIVREQSA--PRVMAVNIDEGEPGTFKDRSYLERDPHRFLEGMLIAAQVAGTEACYIYLR 319 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R+ L ++ A L Y I + GAGAYICGEE+A++ES+EGK+ Sbjct: 320 DEYHDARKMLTQEIEALQAD----PPCPLPY---IELRRGAGAYICGEESAMIESIEGKR 372 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPRL+PP+ A +GL+G PT V+N E++ V I+ +G W+S FGR +G + FS+SG Sbjct: 373 GQPRLRPPYVAQLGLFGKPTLVHNFETLYWVRDIVEKGPQWFSSFGRHGRQGLRSFSVSG 432 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + P IT ELI+++CGG+ G L A +PGG+S LPA + +D+D Sbjct: 433 RIKLPGVKLAPAGITVQELIDEYCGGMLDG-HTLYAYLPGGASGGILPAS-LNHIPLDFD 490 Query: 307 GLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 L+ G +G+AAVIV+ DR+ D + R F+ ESCGQCTPCR GT +R+ME Sbjct: 491 TLQPYGCFIGSAAVIVLSQFDRARDAALSAMR---FFAAESCGQCTPCRVGTAKAVRLME 547 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V A L +++ + +IC LG AA P++ + K F Sbjct: 548 APVWDNAT------LEDLNAVMAEASICGLGQAAPNPVRCVQKYF 586 >gi|90426117|ref|YP_534487.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] gi|90108131|gb|ABD90168.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] Length = 518 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 226/409 (55%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + +S+ D + G ++ +++ L + II++V SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGVIDPRSVEDYRAHGGYEGLERALALTSEAIIDDVIKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + + + Y+ NADE + GT DR IM +P+ +IEG IA A+GA Sbjct: 158 PTGIKWRTVAQAAAAQ-KYICCNADEGDSGTFADRMIMEGDPYMVIEGMTIAGIAVGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ E++ AA+ +G LG + +D DI V GAGAYICGEETA+L Sbjct: 217 GYIYIRSEYPHAVEAINAAIAGARRAGYLGPGIGRSRHDFDIEVRVGAGAYICGEETAML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA+ GL+G PT +NNV S A +P IL GA Y+ G +RGT Sbjct: 277 ESIEGKRGVVRAKPPLPAHKGLFGQPTVINNVLSFAAIPFILAGGAQAYADCGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K + G++ + E + IT EL++ GG G + AV GG P ++ Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDDIGGGTASGR-PVRAVQVGGPLGAYFPR-ELF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F ESCG+CTPCR G+ + Sbjct: 395 DTPFDYEAFAARSGLVGHGGVVVFDDTVDMAKQARFAMQFCAIESCGKCTPCRIGSQRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++++ G + I LL ++ + ++ ++CALG +P+ + +F Sbjct: 455 ETIDKIINGDRAPQNIALLEDLCQTMKLGSLCALGGFVPYPVLSALTHF 503 >gi|188584099|ref|YP_001927544.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001] gi|179347597|gb|ACB83009.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001] Length = 519 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 139/391 (35%), Positives = 215/391 (54%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L+ + ++ +V+ SGLRGRGGAGF G+KW+ + SD+ Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAEGVVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG IA+ A GA +IY R E+ + ++L+ Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIANGVKAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV + VP I+ GA Y+ +G + GT ++G++ + +E + Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPWIMEHGAKAYAEYGMGRSLGTLPIQLAGNIKHGGLIEYA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ++I++ GG G + AV GG P ++ +DY+ + +G Sbjct: 356 FGITIRQVIDEFGGGTASGRP-VRAVQVGGPLGAYFP-DELLDTPLDYEAMAAKKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G + M++++ GI + + L Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I NF Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504 >gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19] gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3] gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19] gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3] Length = 596 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 ++E + +I E+ SGLRGRGG GF TG+KW KV + + Y+V NADE +PG D Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R I+ +PH+++E I + GA +Y+R E+ E L+ A+ + GLLG N Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGASKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 264 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + DI + +GAGA++CGEETAL+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A +P IL RGA W+S G E ++GTK+F+++G VN +E M T E + GG Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 AV GG S CL + I DYD L GS +G+ +IVMD D + A+ Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441 Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + + F ESCG+C PCR G + +++++ G + ++ L ++ I+ +C Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGTEEDLTRLRNLAMVIKDTALCG 501 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 LG + P+ + NF + + HRC Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530 >gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] Length = 596 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 ++E + +I E+ SGLRGRGG GF TG+KW KV + + Y+V NADE +PG D Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R I+ +PH+++E I + GA +Y+R E+ E L+ A+ + GLLG N Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGASKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGKNIF 264 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + DI + +GAGA++CGEETAL+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A +P IL RGA W+S G E ++GTK+F+++G VN +E M T E + GG Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 AV GG S CL + I DYD L GS +G+ +IVMD D + A+ Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441 Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + + F ESCG+C PCR G + +++++ G + ++ L ++ I+ +C Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCG 501 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 LG + P+ + NF + + HRC Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530 >gi|240141253|ref|YP_002965733.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta subunit [Methylobacterium extorquens AM1] gi|240011230|gb|ACS42456.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta subunit [Methylobacterium extorquens AM1] Length = 519 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 142/391 (36%), Positives = 211/391 (53%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L+ I+ +V+ SGLRGRGGAGF G+KW+ + SD+ Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG IA+ A GA +IY R E+ + ++L+ Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV + VP IL GA Y+ +G + GT ++G++ +E + Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ++IE GG G + AV GG P + +DY+ + +G Sbjct: 356 FGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFP-DDLLDTPLDYEAMAAKKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G + M++++ GI + + L Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I NF Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504 >gi|134277692|ref|ZP_01764407.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305] gi|134251342|gb|EBA51421.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305] Length = 521 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 146/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAAAQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 IYVR E+ +L A+ A+G LG+ S LG + ++ V GAGAY+CGEETAL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F +SG+V VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLSGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|260576446|ref|ZP_05844436.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2] gi|259021329|gb|EEW24635.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2] Length = 509 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 147/391 (37%), Positives = 210/391 (53%), Gaps = 6/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL++ + G + + L I+ EV ASGLRGRGGAGF TG+KW + + + + Sbjct: 112 SLAEFQAHGGLAGLRRALAMVPADIVAEVTASGLRGRGGAGFPTGIKWKTVAEAGAGQ-K 170 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA A+GA ++Y+R E+ + Sbjct: 171 YIVCNADEGDSGTFADRMIMEGDPFLLIEGMTIAGLAVGATKGYVYIRSEYPDAIAVMTE 230 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV A GLLG++ G DI + GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 231 AVVLARAEGLLGASVLGSGKAFDIEIRTGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 290 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV S+ VP IL +GA +Y FG +RGT I+G+V + E + Sbjct: 291 LHGFLGRPTVVNNVISLTSVPIILDKGAGYYRDFGLGRSRGTIPLQIAGNVRFGGLFEVA 350 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T E+++ GG G + AV GG P ++ Y+ G +G Sbjct: 351 FGLTLGEIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-ELFDTPFCYEEYAGKGGLVGH 408 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D++ F ESCG+CTPCR G M ++R+ +G I L Sbjct: 409 AGLVVFDDTADMLHQARFAMEFCAIESCGKCTPCRIGAVRGMETLDRIGRG--DTAAIPL 466 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ ++ ++CALG +P+ + +F Sbjct: 467 LSDLCDTMKAGSLCALGGFTPYPVMSALTHF 497 >gi|206602860|gb|EDZ39341.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 453 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 155/420 (36%), Positives = 229/420 (54%), Gaps = 19/420 (4%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS + G ++ + ++L I E+K +GLRGRGG+GF T +KW KV + Sbjct: 29 GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWE---KVANH 85 Query: 76 R--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 R Y+V N E EPG+ KD ++ PH ++EG +IASFA+ A A ++V+ F R Sbjct: 86 RIREKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVQARKAILFVKDSFPRGI 145 Query: 134 ESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQP 189 ++L+ A DE G LG S+ D++I V G AYI GEETALLE+LEG+ Sbjct: 146 DALKKARDEAREEGFLGDRILGSEFSIDLEIFV--GPSAYIAGEETALLEALEGRLPKPR 203 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 P +P + GLY CPT VNNVE+ A V I R GA W+ G + GT +FS++G V Sbjct: 204 PKPPGYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVR 263 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P VE + + L+E++ GG G + + + PGG S LPA + +DYD L+ Sbjct: 264 RPIVVELPLGTSLRTLVEEYAGGAPDG-ERIESFYPGGPSFGVLPAKDL-DTPLDYDALR 321 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +GSG+G+ VIV+ + + + FY+ SCGQC PCR GT + ++E G Sbjct: 322 ALGSGIGSGGVIVLSDKDCPVATARQFADFYETGSCGQCPPCRIGTENLHEILELFETGK 381 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424 A K + + +S I+GR C L A+A+ ++ L+++F + +D + HR F Sbjct: 382 ASKENVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDKGCRRQHRTPF 441 >gi|254441379|ref|ZP_05054872.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Octadecabacter antarcticus 307] gi|198251457|gb|EDY75772.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Octadecabacter antarcticus 307] Length = 505 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 145/391 (37%), Positives = 214/391 (54%), Gaps = 6/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + I+ EV SGLRGRGGAGF TG+KW+ + +D+ Sbjct: 108 SLPDYEAHGGLVGLRRAIAMTPADIVGEVTTSGLRGRGGAGFPTGIKWNTVLGAKADQ-K 166 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P TLIEG +IA A+ A ++Y+R E+ + + Sbjct: 167 YIVCNADEGDSGTFADRMIMEGDPFTLIEGMIIAGLAVEATKGYVYLRSEYPDAIDIMDK 226 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV +GLLG++ G D+ + GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 227 AVVLARHAGLLGADVLGSGRSFDMEIRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 286 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV S+A VP ++ +GA Y+ FG ++GT I+G+V + E + Sbjct: 287 LEGFLGKPTVVNNVISLATVPVVMEKGAQHYADFGLGRSKGTIPIQIAGNVKFGGLYETA 346 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + +L++K GG G + AV GG +P + Y+ G +G Sbjct: 347 FGMPLGDLVDKVAGGSLSGR-PVKAVQVGGPLGAYMPRSKFE-TPFGYEEFDGQGGLIGH 404 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D S D++ F ESCG+CTPCR G + ++R+ KG I+L Sbjct: 405 AGMVVFDDSIDMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIGKG--DTAAIEL 462 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++ ++CALG +P+ + NF Sbjct: 463 LEDLCETMKDGSLCALGGFTPFPVLSALHNF 493 >gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7] gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] Length = 596 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 ++E + +I E+ SGLRGRGG GF TG+KW KV + + Y+V NADE +PG D Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R I+ +PH+++E I + GA +Y+R E+ E L+ A+ + GLLG N Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGASKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 264 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + DI + +GAGA++CGEETAL+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A +P IL RGA W+S G E ++GTK+F+++G VN +E M T E + GG Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 AV GG S CL + I DYD L GS +G+ +IVMD D + A+ Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441 Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + + F ESCG+C PCR G + +++++ G + ++ L ++ I+ +C Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCG 501 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 LG + P+ + NF + + HRC Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530 >gi|317970222|ref|ZP_07971612.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0205] Length = 498 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 152/394 (38%), Positives = 237/394 (60%), Gaps = 12/394 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +SL ++ + G + + ++L++ II V+ SGLRGRGGAG+ TG+KW+ + + D Sbjct: 102 ESLEEAEAAGAYLQLRRVLQENDPLAIIERVRRSGLRGRGGAGYPTGLKWAAVAAMPGDS 161 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 +V NADE +PG DR +M +PHTL+EG VIA+FA+GA +IYVRGE+ E L Sbjct: 162 -KVVVCNADEGDPGAFMDRTVMEGDPHTLLEGMVIAAFAVGAERGWIYVRGEYPLAIERL 220 Query: 137 QAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + +++ SG LG S G+ D+ + GAGAY+CGEETAL+ S+EG++G PR +PPF Sbjct: 221 RRGIEQARQSGWLGGSVGASGFRFDLELRVGAGAYVCGEETALIHSIEGRRGVPRPRPPF 280 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G++G PT +NNVE+ A +P +LR G Y +GTK+FS++GHV VE Sbjct: 281 PAEQGVHGFPTLINNVETFANIPALLRLGLEAY-------GQGTKVFSLTGHVQRSGVVE 333 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + ++E GG + G + AV GG S C+PA + + DYD L+E+G+ + Sbjct: 334 VPMGTSLRTIVETMAGGPKNG-HQIKAVQTGGPSGGCVPASHLDTPV-DYDSLRELGTIM 391 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++VMD +TD++ F + ESCG+C PCR GT + ++ +L+ G ++ Sbjct: 392 GSGGMVVMDDTTDMVDLAAFFMAFCREESCGKCIPCRCGTVQLEILLRKLLAGQGTGSDL 451 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L + ++ ++C LG A P+ ++++R Sbjct: 452 SQLESLCHTVKEASLCGLGQNAPNPVLSSLRHYR 485 >gi|19527557|gb|AAL89893.1| RE33648p [Drosophila melanogaster] Length = 239 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/179 (61%), Positives = 134/179 (74%), Gaps = 1/179 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+ Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALI 228 >gi|115526637|ref|YP_783548.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] gi|115520584|gb|ABJ08568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] Length = 518 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 222/392 (56%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D + G ++ + + L D II++V SGLRGRGGAGF TG+KW + + ++ Sbjct: 115 RSIEDYCANGGYEGLQRALALPSDAIIDDVVKSGLRGRGGAGFPTGIKWRTVAQTEAEH- 173 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE + GT DR +M +P+ +IEG IA A+GA +IY+R E+ ES+ Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPYMVIEGMTIAGIAVGATRGYIYIRSEYPYAVESMN 233 Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA+ +G LG + +D DI V GAGAYICGEET+++ES+EGK+G R KPP P Sbjct: 234 AAIAGARRAGWLGPGLGRSRHDFDIEVRVGAGAYICGEETSMMESIEGKRGLVRAKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+G PT +NNV + A VP IL GA Y+ G +RGTK ++G+V + E Sbjct: 294 AHKGLFGKPTVINNVLTFAAVPFILAGGAQAYADCGMGRSRGTKPIQLAGNVKHGGLFEV 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT EL+++ GG G + AV GG P + DY+ +G Sbjct: 354 AFGITLGELVDEVGGGTASG-RPVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGLVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 V+V D + D+ K F ESCG+CTPCR G+ + ++++++G + I Sbjct: 412 HGGVVVFDDTVDMAKQARFAMQFCSIESCGKCTPCRIGSVRGVETIDKIIEGDRSAQNIA 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++ ++CALG +P+ +K+F Sbjct: 472 LLEDLCQTMKLGSLCALGGFVPFPVLSALKHF 503 >gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] Length = 596 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 218/390 (55%), Gaps = 7/390 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 ++E + +I E+ SGLRGRGG GF TG+KW KV + + Y+V NADE +PG D Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R I+ +PH+++E I + GA+ +Y+R E+ E L+ A+ + GLLG N Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGANKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 264 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + DI + +GAGA++CGEETAL+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A +P IL RGA W+S G E ++GTK+F+++G VN +E M T E + GG Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 AV GG S CL + I DYD L GS +G+ +IVMD D + A+ Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441 Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + + F ESCG+C PCR G + +++++ G + ++ L ++ I+ +C Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGTEEDLIRLRNLAMVIKDTALCG 501 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 LG + P+ + NF + + HRC Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530 >gi|104780976|ref|YP_607474.1| formate dehydrogenase subunit beta [Pseudomonas entomophila L48] gi|95109963|emb|CAK14668.1| putative formate dehydrogenase, beta subunit [Pseudomonas entomophila L48] Length = 517 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 217/409 (53%), Gaps = 7/409 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 T Q +F + SL D + G ++ + + D ++ V SGLRGRGGA F Sbjct: 100 TQQRLLFARAGITRPLSLDDYHANGGFEGLRQATLMEGDEVVAAVLDSGLRGRGGAAFPA 159 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + + + R Y+V NADE + GT DR +M +P LIEG +IA A+GA + Sbjct: 160 GIKWRTVRQAQAVR-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGASHGY 218 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182 IYVR E+ L A+ +G L G + V GAGAYICGEETALLES+ Sbjct: 219 IYVRSEYPDAIRVLNEAILLAREAGYLDVAGN-GVAFHLEVRVGAGAYICGEETALLESI 277 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT F Sbjct: 278 EGKRGIVRAKPPLPALEGLFGQPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTLPF 337 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ++G+V VE + +T EL+E + GG G L A GG +P Sbjct: 338 QLAGNVLRGGLVERAFGLTLRELVEGYGGGTASG-RPLKAAQVGGPLGAWVPPTNFD-TP 395 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DY+ MG+ LG V+V D + D+ F ESCG+CTPCR G+ + V+ Sbjct: 396 LDYEAFAAMGAMLGHGGVVVADDTLDMAGMARFALQFCAEESCGKCTPCRIGSTRGLEVI 455 Query: 363 ERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +RL+ ++ + LL ++ ++ ++CA+G +P+ + +F Sbjct: 456 DRLIASTDPAYRQGQAGLLRDLCDTMQYGSLCAMGGMTPYPVVSALDHF 504 >gi|146278886|ref|YP_001169045.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] gi|145557127|gb|ABP71740.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] Length = 509 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 18/396 (4%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + + G ++ + + + R I+ EV SGLRGRGGAGF TG+KW + + +D+ Y Sbjct: 113 LEEYEAHGGFEGLHRAIGMSRAEILQEVIESGLRGRGGAGFPTGIKWKTVSEAQADQ-KY 171 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR IM +P TLIEG IA A GA ++Y+R E+ E + A Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMIEA 231 Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 V GLLG + S +D++I V GAGAY+CGEET+LL SLEGK+G R KPP P Sbjct: 232 VRIARGHGLLGPSVMGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A G G PT VNNV S+A +P I ++GA++Y FG +RGT I+G+V E Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314 + ++ ++++ GG G + AV GG P A+ D E +G Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403 Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G A ++V D + D++K F ESCG+CTPCR G M ++R+ +G A Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARGDAAA 463 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I LL ++ ++ ++CALG +P+ + +F Sbjct: 464 --IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497 >gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] Length = 560 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 218/393 (55%), Gaps = 21/393 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++ + + G + + + E G DW + ++V ASGLRG GGAGF +G KW F+ + Sbjct: 183 ETFAKYQAEGGYTALQDLRENG-DWEAVQDKVLASGLRGLGGAGFPSGKKWGFV--RANP 239 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL VN DE EPGT KDR + PH +EG +IA++A+ A +IY+R E+ Sbjct: 240 GPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLHI 299 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L + +G++ G+ I + GAGAYICGEE+A++ES+EGK+G PR +PP+ Sbjct: 300 LAEEIKALEDAGIVAP----GF---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPY 352 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VGL+G PT V+N+E++ V I R G S + G + +S+SG V P Sbjct: 353 VAQVGLFGQPTLVHNIETLHWVARICREGPETLSSTEKNGRVGLRSYSVSGRVAKPGVYL 412 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ++IE GG+ G A PGG S LPA + +D+D L+ +G+ + Sbjct: 413 LPAGSTITDIIEA-AGGMAEG-HVFKAYQPGGPSSGLLPA-SINDVPLDFDTLQPLGTFI 469 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V+ A + F++ ESCGQCTPCR G +++M+ A K + Sbjct: 470 GSAAVVVLSDQDKARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADKWDT 523 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 DLL E+S + +IC LG AA PI+ +K+F Sbjct: 524 DLLDELSTAMVDASICGLGQAAPNPIRLTMKHF 556 >gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] Length = 572 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 137/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + VN DE EPGT KD+ + +PH +EG +I + + A Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAA 289 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ RE L + + G I + GAGAYICGEE++L+ Sbjct: 290 EVYIYLRDEYPISREILAREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR KPPFP VGL+ PT +NN+E++ V ++ RGA W+ GR G Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGL 398 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELI+++CGGI G + A +PGG+S LPA M Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGISDG-HSFAAYLPGGASGGILPA-SMN 456 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+++ D+ A L F++ ESCGQCTPCR GT Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKAR 516 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +ME V + DLL E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 517 MLMENGVW------DTDLLGELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565 >gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens] gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] Length = 572 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 137/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + VN DE EPGT KD+ + +PH +EG +I + + A Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAA 289 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ RE L + + G I + GAGAYICGEE++L+ Sbjct: 290 DVYIYLRDEYPISREILAREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR KPPFP VGL+ PT +NN+E++ V ++ RGA W+ GR G Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGL 398 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELI+++CGGI G + A +PGG+S LPA M Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGISDG-HSFAAYLPGGASGGILPA-SMN 456 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+++ D+ A L F++ ESCGQCTPCR GT Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKAR 516 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +ME V + DLL E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 517 MLMENGVW------DTDLLGELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565 >gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium extorquens PA1] gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta [Methylobacterium extorquens DM4] gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium extorquens PA1] gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens DM4] Length = 572 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 137/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + VN DE EPGT KD+ + +PH +EG +I + + A Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAA 289 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ RE L + + G I + GAGAYICGEE++L+ Sbjct: 290 EVYIYLRDEYPISREILAREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR KPPFP VGL+ PT +NN+E++ V ++ RGA W+ GR G Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGL 398 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELI+++CGGI G + A +PGG+S LPA M Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGISDG-HSFAAYLPGGASGGILPA-SMN 456 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+++ D+ A L F++ ESCGQCTPCR GT Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKAR 516 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +ME V + DLL E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 517 MLMENGVW------DTDLLGELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565 >gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien [Candidatus Puniceispirillum marinum IMCC1322] gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 572 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 142/397 (35%), Positives = 226/397 (56%), Gaps = 25/397 (6%) Query: 17 GKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + D ++ G + + +L EK + +++ + + LRG GGAGF TG KW ++ S Sbjct: 190 ARRFDDYVADGGYSLLKALLAGEKTAEDVLSVLDNTALRGLGGAGFPTGRKW----RIVS 245 Query: 75 DRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 +P + VN DE EPGT KDR + ++PH +IEG +IA+ +G +IY+R E+ Sbjct: 246 GQPGPRLMAVNGDEGEPGTFKDRLYLSNDPHRMIEGILIATKVVGIDACYIYMRDEYPEI 305 Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L+ + A+GL ++ + GAGAYICGEE+A++ES+EGK+G PR + Sbjct: 306 IALLKEELAAVEAAGLTDHT-------ELHLRRGAGAYICGEESAMIESIEGKRGLPRHR 358 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPF A G++ PT VNNVE++ + I+ +GA W++ G++ + G + +S+SG V P Sbjct: 359 PPFVAEKGIFDRPTLVNNVETLYWIRDIVEQGADWFNNQGKDGHPGPRSYSVSGRVAKPG 418 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG-LKEM 311 + T +ELI CGG+ G + +PGG+S LPA + +D+ G L E Sbjct: 419 VIVAPAGSTVEELIAL-CGGMADGH-SFKGYLPGGASGGILPASK-SDIPLDFGGKLAEE 475 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G +G+ AV+V+ ++ A L F+ HESCGQCTPCR GT + +M+ + Sbjct: 476 GCFVGSHAVVVLSDQDNMWDAATNLLKFFAHESCGQCTPCRNGTEKAVTLMQ------SA 529 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++LL E+S + +IC LG AA+ P+ ++K+F Sbjct: 530 NPDVNLLGELSIAMGDASICGLGQAASNPLTSVMKHF 566 >gi|126453004|ref|YP_001067207.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 1106a] gi|167846783|ref|ZP_02472291.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei B7210] gi|242317218|ref|ZP_04816234.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1106b] gi|126226646|gb|ABN90186.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1106a] gi|242140457|gb|EES26859.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1106b] Length = 527 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + R+ G +R++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|237813331|ref|YP_002897782.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei MSHR346] gi|237505526|gb|ACQ97844.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei MSHR346] Length = 521 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAAAQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 IYVR E+ +L A+ A+G LG+ S LG + ++ V GAGAY+CGEETAL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G+V VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|167903757|ref|ZP_02490962.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei NCTC 13177] gi|254181073|ref|ZP_04887671.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 1655] gi|184211612|gb|EDU08655.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 1655] Length = 521 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + R+ G +R++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|254195650|ref|ZP_04902077.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13] gi|169652396|gb|EDS85089.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13] Length = 521 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + R+ G +R++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|86747851|ref|YP_484347.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] gi|86570879|gb|ABD05436.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] Length = 518 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 144/392 (36%), Positives = 213/392 (54%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D + G + +++ L+ D II+++ SGLRGRGGAGF TG KW + + + Sbjct: 115 RSIDDYRAHGGYKGLERALKMSSDAIIDDIVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE + GT DR +M +P +IEG IA A+GA +IY+R E+ E++ Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATRGYIYIRSEYPHAVEAMN 233 Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA++ +G LG + D DI V GAGAYICGEET++LESLEGK+G R KPP P Sbjct: 234 AAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+G PT +NNV + + VP IL GA Y+ G +RGTK + G++ + E Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGRSRGTKPIQLGGNIRHGGLFEV 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT ELI+ GG G + AV GG P + DY+ +G Sbjct: 354 AFGITLGELIDDIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 V+V D + D+ K F ESCG+CTPCR G+ +++++ G I Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGAETVDKIIAGDRPAANIA 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++ ++ ++CALG A P+ + +F Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALAHF 503 >gi|217420419|ref|ZP_03451924.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576] gi|217395831|gb|EEC35848.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576] Length = 521 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGT-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + R+ G +R++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|167895370|ref|ZP_02482772.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 7894] gi|167919995|ref|ZP_02507086.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei BCC215] Length = 521 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAAAQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178 IYVR E+ +L A+ A+G LG+ S LG + ++ V GAGAY+CGEETAL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G+V VE + +T EL+ GG G A + GG LP Q Sbjct: 337 TLPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQW 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ Sbjct: 396 D-IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|126439777|ref|YP_001059919.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668] gi|126219270|gb|ABN82776.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668] Length = 521 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+ PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + R+ G +R++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|3724144|emb|CAA11234.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 520 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 149/410 (36%), Positives = 220/410 (53%), Gaps = 5/410 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S Y+V NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 160 FPTGIKWKTVLGAQSAV-KYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L++A+ A+G LG + + G + V GAGAY+CGEETAL Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT +NNV S+A V R A +Y +G +RG Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVAGESWRAAEYYRDYGMGRSRG 338 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESRF 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ G +G ++V D + D+ KA F ESCG+CTPCR G+ Sbjct: 398 D-VPLDYEAYAAFGGVVGHGGIVVFDETVDMAKAGPYAMEFCAIESCGKCTPCRIGSTRG 456 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 506 >gi|77464660|ref|YP_354164.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides 2.4.1] gi|77389078|gb|ABA80263.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides 2.4.1] Length = 509 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 18/396 (4%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + + G ++ + + + R I+ EV SGLRGRGGAGF TG+KW + + + + Y Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR IM +P TLIEG IA A GA ++Y+R E+ E + A Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMGEA 231 Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 V A GLLG + S +D++I V GAGAY+CGEET+LL SLEGK+G R KPP P Sbjct: 232 VRIARAHGLLGPSVMGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A G G PT VNNV S+A +P I ++GA++Y FG +RGT I+G+V E Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314 + ++ ++++ GG G + AV GG P A+ D E +G Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403 Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G A ++V D + D++K F ESCG+CTPCR G M ++R+ +G A Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARGDAAA 463 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I LL ++ ++ ++CALG +P+ + +F Sbjct: 464 --IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497 >gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 579 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 158/425 (37%), Positives = 232/425 (54%), Gaps = 13/425 (3%) Query: 3 TDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 +Q R+ G + S+ D ++ ++ + LE G D II +V S LRGRGG GF Sbjct: 91 ANQHRLVLRRSGHIDPTSIEDYIATDGYEGLALALELGPDEIIRQVTDSYLRGRGGGGFR 150 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 TG KW K C D P Y++ N DE +PG DR +M +PH++IEG +I ++A+GA Sbjct: 151 TGYKW----KSCRDAEDFPKYVIANGDEGDPGAFMDRSLMEGDPHSVIEGMIIGAYAVGA 206 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176 +IYVR E+ L+ A+++ GLLG N LG +D DI + G GA++CGE + Sbjct: 207 REGYIYVRNEYPLAVRRLEIAIEKAREWGLLGKNI-LGSAFDFDIQICKGGGAFVCGESS 265 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EG G PR+K GL+ PT +NNVE+ A VP IL +G WY G + N Sbjct: 266 ALMRSIEGFPGVPRVKYIHATEQGLWDKPTVLNNVETWANVPIILMKGVEWYKTLGTDRN 325 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+F++ G V VE M +T ++I GG AV GG S C+PA Sbjct: 326 HGTKIFALVGKVKNTGLVEVPMGVTLRKIIYDIGGGTLKD-KAFKAVQTGGPSGGCIPAS 384 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + + D+D L + GS +G+ +IVMD + ++ F ESCG+CTPCREG Sbjct: 385 LLDLPV-DFDTLVKSGSMMGSGGMIVMDERSCMVDVAKYFIDFLVEESCGKCTPCREGLK 443 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +++ L +G +++ LL +++K + +C LG AA P+ +K F EE + Sbjct: 444 VLQKLLRDLSEGKGSLKDVALLEDMAKELSKTALCGLGKTAANPVLSTLKYFHEEYEEHV 503 Query: 417 DQYHR 421 D Y R Sbjct: 504 DGYCR 508 >gi|167619115|ref|ZP_02387746.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis Bt4] Length = 522 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + Sbjct: 117 SIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVRDAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARSRAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPVP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ F ESCG+CTPCR G+ + + ++ G ++++ Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL E+ + ++CA+G +P+ + +F Sbjct: 473 LLRELCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|332559554|ref|ZP_08413876.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides WS8N] gi|332277266|gb|EGJ22581.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides WS8N] Length = 509 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 18/396 (4%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + + G ++ + + + R I+ EV SGLRGRGGAGF TG+KW + + + + Y Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR IM +P TLIEG IA A GA ++Y+R E+ E + A Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMGEA 231 Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 V A GLLG + S +D++I V GAGAY+CGEET+LL SLEGK+G R KPP P Sbjct: 232 VRIARAHGLLGPSVIGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A G G PT VNNV S+A +P I ++GA++Y FG +RGT I+G+V E Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314 + ++ ++++ GG G + AV GG P A+ D E +G Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403 Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G A ++V D + D++K F ESCG+CTPCR G M ++R+ +G A Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARGDAAA 463 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I LL ++ ++ ++CALG +P+ + +F Sbjct: 464 --IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497 >gi|167581037|ref|ZP_02373911.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis TXDOH] Length = 522 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + Sbjct: 117 SIDDYVAHGGLEGLKNALALDGATACETLVESGLRGRGGAAFPAGIKWRTVRDAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPVP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ F ESCG+CTPCR G+ + + ++ G ++++ Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL E+ + ++CA+G +P+ + +F Sbjct: 473 LLRELCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] Length = 571 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 154/416 (37%), Positives = 221/416 (53%), Gaps = 31/416 (7%) Query: 5 QDRIFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 QD + Y G +L D G+W++V VK SGLRG GGAGF + Sbjct: 181 QDYEGFDAYAADGGYATLKDLRKNGNWEDVQA-----------SVKESGLRGLGGAGFPS 229 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW F+ P YL VN DE EPGT KDR + PH +EG +IA++A+ A F Sbjct: 230 GTKWGFVRGNVG--PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETCF 287 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182 IY+R E+ LQ DE A G K G+ I + GAGAYICGEE+A++ES+ Sbjct: 288 IYMRDEY---PAVLQILADEIAALEQAGIVQK-GF---IDLRRGAGAYICGEESAMIESI 340 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR +PP+ A VG++ PT V+NVE++ V I R G + +G + + Sbjct: 341 EGKRGMPRHRPPYVAQVGVFNRPTLVHNVETLLWVARICREGPECLNSTELNGRKGLRSY 400 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SG V P T ++I+ CGG+ G A PGG S LPA + Sbjct: 401 SVSGRVANPGVYLLPAGSTITDIIDA-CGGMADG-HVFKAYQPGGPSSGLLPA-SIHDVP 457 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L+ +G+ +G+AAV+V+ + A + F++ ESCGQCTPCR G +++M Sbjct: 458 LDFDTLQPLGTFIGSAAVVVLSEADSARGAALNMLRFFEDESCGQCTPCRVGCEKAVKLM 517 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + A + LL E+S + +IC LG AA PI+ ++K+F + + D+ Sbjct: 518 Q------ADTWDQGLLEELSTAMVDASICGLGQAAPNPIRMVLKHFADEVSDGADK 567 >gi|332527763|ref|ZP_08403802.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] gi|332112159|gb|EGJ12135.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] Length = 490 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 142/410 (34%), Positives = 221/410 (53%), Gaps = 17/410 (4%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL + S++D + G + + II + SGLRGRGGA F Sbjct: 89 LQRQQRLTFARAGLTRPLSIADYEAHGGGAGLRAARAMAPEAIIQAIVDSGLRGRGGAAF 148 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V N DE + GT DR ++ +P LIEG IA+ A+GA Sbjct: 149 PAGIKWRTVAQAAGEL-KYVVCNGDEGDSGTYADRMLLEGDPFLLIEGMAIAARAVGASR 207 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVR E+ R E A++ A+G L G+D++ V GAG+Y+CGEETA+LE Sbjct: 208 GYVYVRSEYPRSVEIFGRAIEVARAAGWLD-----GFDME--VRMGAGSYVCGEETAMLE 260 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G R KPP PA GL+G PT +NN+ ++A VPTIL G ++Y FG + GT Sbjct: 261 SLEGRRGVVRAKPPLPAIAGLFGRPTVINNLLTLAAVPTILAEGPAYYRDFGVGRSTGTM 320 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAGQM 298 F ++G++ +P VE + +T EL+ GG G + P GS VP + Sbjct: 321 PFQLAGNLRFPGLVERAFGVTLRELLFDFGGGTASGRPVKAVQVGGPLGSYVP----EEH 376 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ LG ++V D + D+ + F ESCG+CTPCR G+ Sbjct: 377 WDVPLDYEAYAVVGAVLGHGGLVVHDDTADMARLARYAMAFCAQESCGKCTPCRIGSTRG 436 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V+++L+ G R+ LL ++ ++ ++CA+G P+ + ++ Sbjct: 437 VEVIDKLLAG--DDRQESLLRDLCDTMKHASLCAMGSMTPLPVLSALNHY 484 >gi|83719980|ref|YP_442161.1| formate dehydrogenase subunit beta [Burkholderia thailandensis E264] gi|257138350|ref|ZP_05586612.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis E264] gi|83653805|gb|ABC37868.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis E264] Length = 522 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + Sbjct: 117 SVDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVRDAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARSRAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPVP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ F ESCG+CTPCR G+ + + ++ G ++++ Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL E+ + ++CA+G +P+ + +F Sbjct: 473 LLRELCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|91975104|ref|YP_567763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] gi|91681560|gb|ABE37862.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] Length = 518 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 214/392 (54%), Gaps = 4/392 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +S+ D + G + ++ L D II++V SGLRGRGGAGF TG KW + + + Sbjct: 115 RSIDDYRAHGGYRGLEHALRMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+ NADE + GT DR +M +P +IEG IA A+GA +IY+R E+ E++ Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATKGYIYIRSEYPHAVEAMN 233 Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA++ +G LG + D DI V GAGAYICGEET++LESLEGK+G R KPP P Sbjct: 234 AAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ GL+G P+ +NNV + + VP IL GA Y+ G +RGTK + G+V + E Sbjct: 294 AHKGLFGRPSVINNVLTFSAVPYILDGGAQAYADCGMGRSRGTKPIQLGGNVKHGGLFEV 353 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT ELI++ GG G + AV GG P + DY+ +G Sbjct: 354 AFGITLGELIDEIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 V+V D + D+ K F ESCG+CTPCR G+ ++++++ G +I Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGAEMVDKIIAGDKPAADIA 471 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +L ++ ++ ++CALG A P+ + +F Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503 >gi|28207554|gb|AAO32145.1| NAD-linked formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] Length = 519 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 209/391 (53%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L+ I+ +V+ SGLRGRGGAGF G+KW+ + SD+ Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG IA+ A GA +IY R E+ + ++L+ Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV + VP IL GA Y+ +G + GT ++G++ +E + Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ++IE GG D + + G + + +DY+ + +G Sbjct: 356 FGITIRQVIEDFGGGT--ASDRPVRAVQVGGPLGAYFPDDLLDTPLDYEAMAAKKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ K F ESCG+CTPCR G + M++++ GI + + L Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I NF Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504 >gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] Length = 572 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 136/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + VN DE EPGT KD+ + +PH +EG +I + + A Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAT 289 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ RE L + + G I + GAGAYICGEE++L+ Sbjct: 290 DVYIYLRDEYPISREILTREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR KPPFP VGL+ PT +NN+E++ V ++ RGA W+ GR G Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGADWWKSHGRNGRVGL 398 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELI+++CGG+ G + A +PGG+S LPA M Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGMSDG-HSFAAYLPGGASGGILPA-SMN 456 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+V+ D+ A L F++ ESCGQCTPCR GT Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVVLSDQDDVRGAALNLMRFFEDESCGQCTPCRSGTQKAR 516 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +ME V + +LL E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 517 MLMENGVW------DTELLGELAQCMRDASICGLGQAASNPVSSVIKYFPDLFPE 565 >gi|167563645|ref|ZP_02356561.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis EO147] Length = 522 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P+ LIEG +IA A GA ++YVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATIGYVYVRSEYPHAIATLDD 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ +G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARDAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV ++A P I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + ++ G ++++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16] gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] Length = 602 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 135/394 (34%), Positives = 211/394 (53%), Gaps = 21/394 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD---RPHYLVVNADESE 88 +D+ L + +I + S LRGRGGAGFSTG+KW ++C D Y++ NADE E Sbjct: 197 LDQCLLLKPEQVIETIVDSRLRGRGGAGFSTGLKW----RLCRDAESEQKYVICNADEGE 252 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++ P + G VIA++AIG +Y+RGE+ ++ L+ + E GL Sbjct: 253 PGTFKDRVLLTRAPKKVFVGMVIAAYAIGCRKGIVYLRGEYFYLKDYLERQLQELREDGL 312 Query: 149 LGS--NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG + G+D DI + GAGAYICG+E+AL+ES EGK+G PR+KPPFP G G PT Sbjct: 313 LGRAIGGRAGFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPT 372 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 +VNNVE+ A V I+ GA W+ G ++ GT+L S++G + P E +T +E++ Sbjct: 373 SVNNVETFAAVSRIMEEGADWFRAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVL 432 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 G + AV G S C+ + + Y+ L G A + + Sbjct: 433 AMV------GARDARAVQISGPSGECVSVAKDGERKLAYEDLSCNG------AFTIFNCK 480 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 D+++ + F+ ESCG C PCR G + R +E ++ G A ++++D + + Sbjct: 481 RDLLEIVRDHMQFFVEESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVR 540 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + C LG + PI ++ F + + ++ ++ Sbjct: 541 RTSRCGLGATSPKPILTTLEKFPEIYQNKLVRHE 574 >gi|167570807|ref|ZP_02363681.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis C6786] Length = 522 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P+ LIEG +IA A GA ++YVR E+ +L Sbjct: 176 YVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATIGYVYVRSEYPHAIATLDD 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ +G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARDAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV ++A P I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ + F ESCG+CTPCR G+ + + ++ G ++++ Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein [Cupriavidus metallidurans CH34] gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Cupriavidus metallidurans CH34] Length = 602 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 206/387 (53%), Gaps = 15/387 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 +D L + +I+E+ S LRGRGGAGF+TG+KW + SD Y++ NADE EPGT Sbjct: 197 LDHCLTLRPEQVIDEIIESKLRGRGGAGFTTGLKWQLCRRALSDT-KYVICNADEGEPGT 255 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR ++ P + G IA+ AIG +Y+R E+ ++ L+ + + GLLG Sbjct: 256 FKDRALLTRSPKEVFIGMAIAAHAIGCRHGIVYLRAEYFYLKDYLERQLQQLRDDGLLGR 315 Query: 152 --NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 + +D DI + GAGAYICG+E+AL+ES EGK+G PR+KPPFP G G PT VN Sbjct: 316 AIGVRRDFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTCVN 375 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE+ A V I+ GA W+S G ++ GT+L S++G + P E +T +E++ Sbjct: 376 NVETFAAVSRIMEEGADWFSAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVLAMV 435 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 G AV G S C+ + + Y+ L G A + +R+ D+ Sbjct: 436 ------GAKEARAVQISGPSGECVSVEKDGERRLAYEDLSCNG------AFTIFNRNRDL 483 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 + + F+ ESCG C PCR G + R +E ++ G A ++++D + + + Sbjct: 484 LDIVKDYMQFFVDESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRKTS 543 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERI 416 C LG + PI ++ F + ++++ Sbjct: 544 RCGLGATSPKPILTTLEKFPEIYQDKL 570 >gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 623 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 209/369 (56%), Gaps = 9/369 (2%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G KW+ + + Y++ N DE +PG DR +M PH +IEG VIA+ A GA Sbjct: 193 FPVGKKWNLARNQTASK-KYIICNGDEGDPGAFMDRSVMEGNPHGIIEGLVIAAKATGAD 251 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++YVR E+ + ++ AV + +LG N G++ + V GAGA++CGEE AL Sbjct: 252 EGYVYVRTEYALAVKRMKKAVKDASDIKVLGKNIFGSGHNFTLHVMEGAGAFVCGEEIAL 311 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G P KPPFPA GL+G PTT+NNVE++A +P I+ GA + G ++ G Sbjct: 312 IASVEGKRGMPLPKPPFPAQSGLWGKPTTINNVETLATIPMIINYGADVFRETGTVSSPG 371 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPCL 293 TK F+++GHV +E + T ++I GG+ G N AV GG S CL Sbjct: 372 TKTFALTGHVLNTGLIEVPLGSTLRQIIFDISGGVTDGKGSVKDGNFKAVQIGGPSGGCL 431 Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353 + + +D+D LK++G+ +G+ ++VM++S ++ F ++ESCG+C CRE Sbjct: 432 TEEHLDLS-LDFDSLKKVGAMVGSGGLVVMNKSICMVNIAKFFMQFTQNESCGKCVLCRE 490 Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 GT M+ ++ + +G A + I LL E+++ ++ ++C LG A P+ +K FR + Sbjct: 491 GTKQMLLMLSDITEGKADEDTISLLEELARAVQIGSLCGLGKTAPNPVLSTLKYFRNEYD 550 Query: 414 ERIDQYHRC 422 + + RC Sbjct: 551 AHVKE-KRC 558 >gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 572 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 138/353 (39%), Positives = 196/353 (55%), Gaps = 21/353 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + VN DE EPGT KD+ + +PH +EG +I + + A Sbjct: 232 FPTGRKWRSV--RGEPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAA 289 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ R L + + G I + GAGAYICGEE++++ Sbjct: 290 EIYLYIRDEYPIARAILARELAKLPPGG-----------PRIHLRRGAGAYICGEESSMI 338 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR KPPFP VGL+G PT +NNVE++ V ++ +GA+W+ GR G Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGL 398 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELI++ CGG+ G A +PGG+S LPA M Sbjct: 399 RSYSVSGRVAAPGVKLAPAGLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MD 456 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+V+ D+ A L F++ ESCGQCTPCR GT Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKAR 516 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 R+ME+ V + DLL E+S+ + +IC LG AAA P+ LIK F L Sbjct: 517 RLMEQGVW------DTDLLGELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 563 >gi|167837458|ref|ZP_02464341.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis MSMB43] Length = 522 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLAGLKNALALDGAVACETLVESGLRGRGGAAFPAGIKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ +L Sbjct: 176 YIVCNADEGDSGTFSDRLLMESDPYCLIEGMIIAGVATGATVGHIYVRSEYPHAIAALGE 235 Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ A+G LG+ S LG + ++ V GAGAY+CGEETALLESLEGK+G R KPP P Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GL+G PT +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE Sbjct: 295 ALSGLFGQPTVINNVITLATVPVIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +T EL+ GG G A + GG LP Q +DY+ +G+ +G Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +++ D ++++ F ESCG+CTPCR G+ + + ++ G ++++ Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + ++CA+G +P+ + +F Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504 >gi|126463500|ref|YP_001044614.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] gi|126105164|gb|ABN77842.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] Length = 509 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 147/396 (37%), Positives = 216/396 (54%), Gaps = 18/396 (4%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + + G ++ + + + R I+ EV SGLRGRGGAGF TG+KW + + + + Y Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR IM +P TLIEG IA A GA ++Y+R E+ + + A Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVQVMGEA 231 Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 V A GLLG + S +D++I V GAGAY+CGEET+LL SLEGK+G R KPP P Sbjct: 232 VRIARAHGLLGPSVMGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A G G PT VNNV S+A +P I ++GA++Y FG +RGT I+G+V E Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314 + ++ ++++ GG G + AV GG P A+ D E +G Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403 Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G A ++V D + D++K F ESCG+CTPCR G M ++R+ +G Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARG--DT 461 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I LL ++ ++ ++CALG +P+ + +F Sbjct: 462 AAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497 >gi|170751378|ref|YP_001757638.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM 2831] gi|170657900|gb|ACB26955.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM 2831] Length = 519 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/391 (35%), Positives = 209/391 (53%), Gaps = 4/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D + G + ++ L+ I+ V+ SGLRGRGGAGF G+KW+ + +D+ Sbjct: 117 SVDDYRAHGGYRGLEAALKLDAAGIVAAVRESGLRGRGGAGFPAGIKWNTVMLAEADQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR +M +P LIEG IA A GA +IY+R E+ + +L+ Sbjct: 176 YVVCNADEGDSGTFADRMMMEGDPFNLIEGMTIAGVATGATRGYIYLRSEYPQAFATLKE 235 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ +G+LG N G + V GAGAYICGEET+LLESLEGK+G R KPP PA Sbjct: 236 AIANGVTAGVLGDNILGSGKSFHLDVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G G PT VNNV + VP IL GA Y+ +G + GT ++G++ + +E + Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPWILENGARAYADYGMGRSLGTLPIQLAGNIKHGGLIEMA 355 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ++IE GG R G + AV GG P + +DY+ + +G Sbjct: 356 FGITLRQVIEDFGGGTRSGRP-VRAVQVGGPLGAYFP-DHLLDTPLDYEAMAAKKGLVGH 413 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + D+ F ESCG+CTPCR G + M++++ GI + L Sbjct: 414 GGIVVFDDTVDMAAQARFAFEFCATESCGKCTPCRIGATRGVETMDKVIAGIRPDANLKL 473 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ + + ++CA+G P+ I +F Sbjct: 474 VEDLCEVMTDGSLCAMGGLTPMPVMSAITHF 504 >gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 567 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 138/353 (39%), Positives = 196/353 (55%), Gaps = 21/353 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + VN DE EPGT KD+ + +PH +EG +I + + A Sbjct: 227 FPTGRKWRSV--RGEPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAA 284 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ R L + + G I + GAGAYICGEE++++ Sbjct: 285 EIYLYIRDEYPIARAILARELAKLPPGG-----------PRIHLRRGAGAYICGEESSMI 333 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR KPPFP VGL+G PT +NNVE++ V ++ +GA+W+ GR G Sbjct: 334 ESLEGKRGLPRHKPPFPFQVGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGL 393 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELI++ CGG+ G A +PGG+S LPA M Sbjct: 394 RSYSVSGRVAAPGVKLAPAGLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MD 451 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+V+ D+ A L F++ ESCGQCTPCR GT Sbjct: 452 DIPLDFGTLEKYGCFIGSAAVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKAR 511 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 R+ME+ V + DLL E+S+ + +IC LG AAA P+ LIK F L Sbjct: 512 RLMEQGVW------DTDLLGELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 558 >gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC 43184] gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC 43184] Length = 561 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 211/376 (56%), Gaps = 6/376 (1%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + E + +I E+ SGLRGRGG GF TG+KW KV + + Y+V NADE +PG D Sbjct: 111 LTEMTPESVIKEIMDSGLRGRGGGGFPTGLKWQITRKVKAPQ-KYVVCNADEGDPGAFMD 169 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R I+ +PH+++E I + GA +Y+R E+ E L+ A+ + GLLG N Sbjct: 170 RSILEGDPHSIVEAMAINGYCTGATKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 229 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + DI + +GAGA++CGEETAL+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ Sbjct: 230 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEQGYKGCPTNVNNVET 289 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A VP IL +GA W+S G E ++GTK+F+++G VN +E M T E + GG Sbjct: 290 YANVPVILLKGAEWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 348 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 AV GG S CL + I DYD L GS +G+ +IVMD D + A+ Sbjct: 349 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 406 Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 + + F ESCG+C PCR G + +++++ G +++ L ++ I+ +C Sbjct: 407 AKFYLDFTVEESCGKCAPCRIGNKRLHEMLQKITSGNGTIEDLERLRNLAGVIKDTALCG 466 Query: 393 LGDAAAWPIQGLIKNF 408 LG + P+ + NF Sbjct: 467 LGQTSPNPVLSTMDNF 482 >gi|221640574|ref|YP_002526836.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] gi|221161355|gb|ACM02335.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] Length = 509 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/394 (37%), Positives = 213/394 (54%), Gaps = 14/394 (3%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + + G ++ + + + R I+ EV SGLRGRGGAGF TG+KW + + + + Y Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NADE + GT DR IM +P TLIEG IA A GA ++Y+R E+ E + A Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMGEA 231 Query: 140 VDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 V A GLLG S G D+ V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 232 VRIARAHGLLGPSVMGSGRAFDMEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPAL 291 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 G G PT VNNV S+A +P I ++GA++Y FG +RGT I+G+V E + Sbjct: 292 EGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEIAF 351 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG---- 314 ++ ++++ GG G + AV GG P A+ D E +G Sbjct: 352 GMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAEGL 405 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G A ++V D + D++K F ESCG+CTPCR G + ++R+ +G Sbjct: 406 VGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGIETVDRIARG--DTAA 463 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I LL ++ ++ ++CALG +P+ + +F Sbjct: 464 IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497 >gi|239815993|ref|YP_002944903.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110] gi|239802570|gb|ACS19637.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110] Length = 519 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 141/410 (34%), Positives = 222/410 (54%), Gaps = 7/410 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + S++D + + + + L I+ +V SGLRGRGGA F Sbjct: 100 LKKQERLTFARMGVTDPVSVADYEAHEGFAGLRRALTLAPAEIVQQVLDSGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 G+KW + + ++ P Y+V NADE + GT DR M +P L+EG IA A GA Sbjct: 160 PAGIKWKTV--LAAEAPQKYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMAIAGIATGAT 217 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L A+ +G LG + G+ + V AGAY+CGEETAL Sbjct: 218 EGYIYVRSEYPHAIATLNEAIRHAEQAGFLGDDILGSGHAFRLTVRKAAGAYVCGEETAL 277 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT +NNV ++A VP IL RGA +Y +G +RG Sbjct: 278 LESLEGRRGIVRAKPPLPALQGLFGQPTVINNVITLASVPLILARGADFYKHYGMGRSRG 337 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE++ ++ EL+ GG G + AV GG +P Q Sbjct: 338 TLPFQLAGNIRHGGLVEKAFGLSLRELLYDFGGGSASGRP-IKAVQVGGPLGAYVPESQW 396 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G ++V D + D+ + F ESCG+CTPCR G+ Sbjct: 397 D-LPLDYEAYAAVGAVVGHGGIVVHDDTADMSQLARYAMEFCAIESCGKCTPCRIGSTRG 455 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V++++ + +++ LL ++ + ++CA+G +P+ I ++ Sbjct: 456 VEVIDKITSNQNRPQQVILLRDLCDTMLHGSLCAMGGMTPYPVLSAINHY 505 >gi|318041123|ref|ZP_07973079.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0101] Length = 521 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/394 (37%), Positives = 231/394 (58%), Gaps = 12/394 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +SL+D+++ G W + ++LE+ +I V+ SGLRGRGGAG+ TG+KW+ + + + Sbjct: 124 ESLADALAAGAWQQLPRVLEQNDPPAVIEIVRRSGLRGRGGAGYPTGLKWATVAAMPGSQ 183 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 +V NADE +PG DR +M +PHTL+EG IA+FA+GA FIYVR E+ E L Sbjct: 184 -KVVVCNADEGDPGAFMDRTLMEGDPHTLLEGMAIAAFAVGAQQGFIYVRAEYPLAIERL 242 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ G LG G+ +I + GAGAY+CGEETAL+ S+EG++G PR +PP+ Sbjct: 243 RTAISAAEQQGWLGRGIGGSGFSFEIELRVGAGAYVCGEETALIHSIEGRRGVPRPRPPY 302 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G++G PT +NNVE+ +P +L G Y GTK+FS++GHV +E Sbjct: 303 PAEHGVFGLPTLINNVETFGNIPALLELGVEAY-------GTGTKVFSLTGHVQRSGVLE 355 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + ++E GG G + AV GG S C+PA + + DYD LK +G+ + Sbjct: 356 VPMGTSLRTIVETMGGGAPQG-RQIKAVQTGGPSGGCVPASALDSPV-DYDSLKALGTIM 413 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ ++V+D +T+++ F + ESCG+C PCR GT + ++ +L++ Q ++ Sbjct: 414 GSGGMVVLDDTTNMVDIAAFFIAFSREESCGKCIPCRSGTVQLEMLLRKLLERRGQVADL 473 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + L + + ++C LG +A P+ +++FR Sbjct: 474 EQLEALCHTVADASLCGLGQSAPKPVLSTLRHFR 507 >gi|294678552|ref|YP_003579167.1| NAD-dependent formate dehydrogenase subunit beta [Rhodobacter capsulatus SB 1003] gi|294477372|gb|ADE86760.1| NAD-dependent formate dehydrogenase, beta subunit [Rhodobacter capsulatus SB 1003] Length = 500 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 213/390 (54%), Gaps = 12/390 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL+ + W + K L+ ++ EV ASGLRGRGGAGF TG+KW + +D+ Sbjct: 111 SLAQFAAAEGWAGLRKALKMTPAEVVEEVLASGLRGRGGAGFPTGIKWRTVAAAQADQ-K 169 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V N DE + G+ DR ++ +P L+EG IA A+GA ++Y+R E+ ++A Sbjct: 170 YIVCNVDEGDSGSFADRMLIEGDPFCLVEGMAIAGHAVGATRGYVYIRSEYPDAIAVMRA 229 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ A L ++ G+++++ V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 230 AI--AMAKPFL---AEAGFEMEVRV--GAGAYVCGEETSLLNSLEGKRGTVRAKPPLPAL 282 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNN+ S+A VP I+ GA Y FG + +RGT I G+V E Sbjct: 283 KGLFGKPTVVNNLLSLAAVPWIIAHGAKAYESFGMDRSRGTIPLQIGGNVKRGGLFETGF 342 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT EL+E CGG G + AV GG P Y+ G +G A Sbjct: 343 GITLGELVEDICGGTASG-RPVKAVQVGGPLGAYHPVSDYHLPFC-YEQFAGQGGLVGHA 400 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 ++V D + D++K F ESCG CTPCR G + V++R+ G A + LL Sbjct: 401 GLVVHDDTADMLKLARFAMEFCAIESCGTCTPCRIGAVRGVEVIDRIAAGDASA--MPLL 458 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ + ++ ++CALG +P+Q I++F Sbjct: 459 DDLCQTMKLGSLCALGGFTPYPVQSAIRHF 488 >gi|118589441|ref|ZP_01546847.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614] gi|118438141|gb|EAV44776.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614] Length = 540 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 199/349 (57%), Gaps = 17/349 (4%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + + + P YL +N DE EPGT KDR + +PH L+EG +IA+ A+ A Sbjct: 203 FPTGTKWKIVHDLPA--PKYLTINGDEGEPGTFKDRVHLERDPHRLLEGALIAAHAMSAA 260 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ E L+ ++ +G++ + +DI + GAGAYICGEE+A++ Sbjct: 261 RIYLYMRDEYPAVLEILRTEIEALRQAGIITT-------IDIELRRGAGAYICGEESAMI 313 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PPF A VGL+ PT +NVE++ + I+ +G W++ GR ++G Sbjct: 314 ESIEGKRGLPRHRPPFIAQVGLFDRPTLNHNVETLFWIRDIVEKGPEWFASQGRRGHKGY 373 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + FS+SG V P IT +EL+ + CGG+ G +PGG+S LPA + Sbjct: 374 RSFSVSGRVKEPGVKLAPAGITMNELLVEFCGGMEDGH-AFKGYLPGGASGGILPA-SLA 431 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L + G +G+ A++V D+ L F+KHESCGQCTPCR GT M Sbjct: 432 DEPLDFGTLDKYGCFIGSHAIVVFSDQDDMRDVALNLMRFFKHESCGQCTPCRSGTEKME 491 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + L G K +I L V ++ +IC LG AA+ P+ ++K F Sbjct: 492 HL---LAAGDWDKAKIADLDAVMRSA---SICGLGQAASNPVTSVLKFF 534 >gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 633 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 144/398 (36%), Positives = 227/398 (57%), Gaps = 9/398 (2%) Query: 18 KSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S+ + + G ++ K L+ + I E+ SGLRGRGG GF TG KW + D+ Sbjct: 154 ESIDEYLRNGGYEAAKKAFLQMSPEAICTEISESGLRGRGGGGFPTGRKWEAARRQAGDK 213 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NADE +PG +R +M PH++IEG +IA+ AIGA +YVR E+ E + Sbjct: 214 -KYVICNADEGDPGAFMNRSVMEGNPHSVIEGLMIAARAIGADETLVYVRAEYPLAVERM 272 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV + A G+LG N G ++ + GAGA++CGEETA++ S+EG++G PR KPPF Sbjct: 273 RRAVKDATARGILGENVFGSGLNISCEIMEGAGAFVCGEETAMIASIEGQRGMPRPKPPF 332 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT +NNVE++A I+R GA + G + GTK F+++GHV +E Sbjct: 333 PAQSGLWGKPTIINNVETLAHAVRIVREGAIRFRQLGTPGSPGTKTFALTGHVANTGLIE 392 Query: 256 ESMSITFDELIEKHCGGIR---GGWD--NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 T E++ GG+ G D AV GG S CL + MD+D L+ Sbjct: 393 VPFGTTLREIVHNIGGGVTKSDGSIDPTGFKAVQIGGPSGGCLTQEHLD-LPMDFDSLRT 451 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 +G+ +G+ ++ M++ T ++ F + ESCG+C CREGT M+ +M+ +++G A Sbjct: 452 VGAMVGSGGLVAMNQDTCMVSVARFFMEFTQRESCGKCVLCREGTRQMLALMDDIIEGRA 511 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + LL E++ ++ ++C LG A P+ +++F Sbjct: 512 DETTLPLLRELAVAVQKGSLCGLGKTAPNPVLSTLRHF 549 >gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.] Length = 561 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 208/375 (55%), Gaps = 20/375 (5%) Query: 36 LEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 L G DW + ++K SGLRG GGAGF +G KW F+ P YL VN DE EPGT K Sbjct: 201 LRAGGDWQEVQAQIKQSGLRGLGGAGFPSGTKWGFVRSNAG--PRYLAVNGDEGEPGTFK 258 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 DR + PH +EG +IA++A+ A +FIY+R E+ L + +GL+ + Sbjct: 259 DRYYLERTPHLFLEGMLIAAWAVEAETSFIYMRDEYPAVLHILAQEIAALEGAGLVPA-- 316 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF A VG++ PT V+NVE+ Sbjct: 317 --GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAAVGIHNRPTLVHNVET 371 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 + V ++R G + G + +S+SG V P T ++I CGG+ Sbjct: 372 LLWVARVVREGPECLNAVEHNGRTGLRSYSVSGRVKNPGVHLLPAGSTITDIIAA-CGGM 430 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G A PGG S LPA + +D+D L+ +G+ +G+AAV+V+ A Sbjct: 431 LEG-HIFSAYQPGGPSSGLLPA-SIHDVPLDFDTLQPLGTFIGSAAVVVLSDQDSPRAAA 488 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 + F++ ESCGQCTPCR G +++M+ A+ + LL +++ + +IC L Sbjct: 489 LNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------AETWDQPLLEDLTTAMVEASICGL 542 Query: 394 GDAAAWPIQGLIKNF 408 G AA PI+ +IK F Sbjct: 543 GQAAPNPIKSVIKYF 557 >gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 634 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 148/404 (36%), Positives = 233/404 (57%), Gaps = 11/404 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++ D++ G + + K+L ++ +I EV SGLRGRGG GF TG KW + D Sbjct: 161 ENMEDALGVGAYTALGKVLTTMTQEEVIKEVSESGLRGRGGGGFPTGRKWEAARRANGDV 220 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NADE +PG DR I+ +P+ ++E I +AIGA +IY+R E+ L Sbjct: 221 -KYVICNADEGDPGAFMDRAILEGDPNLVLEAMAICGYAIGASKGYIYIRAEYPLAVHRL 279 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + GLLGSN G++ DI + +GAGA++CGE TAL+ S+EG +G+P +KPP Sbjct: 280 KVALKQAKDIGLLGSNILNTGFNFDIEIKYGAGAFVCGEATALIHSIEGLRGEPTMKPPR 339 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 + GL+ PT VNNVE+ A V I+ GA WYS G E + GTK+F+++G++N VE Sbjct: 340 TSEKGLWQRPTCVNNVETFANVSQIINNGAKWYSSIGAEKSAGTKVFALAGNINNVGLVE 399 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + +++ + GGI L A+ GG S C+P + I +YD L +GS + Sbjct: 400 IPMGMPLRDIVYEIGGGIINN-KALKAIQTGGPSGGCIPVEYLDLPI-EYDTLTSIGSMM 457 Query: 316 GTAAVIVMDRS---TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 G+ +IVMD DI K SV ESCG+CTPCR G ++ +++++ G A + Sbjct: 458 GSGGMIVMDEDNCMVDIAKFYLEFSV---DESCGKCTPCRIGNKRILELLKKITDGTAVE 514 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ + E+ + + ++C LG+AA P+ +K F +E + Sbjct: 515 EDLEKINELCEVVRDASLCGLGEAAPNPVLSTLKFFNNEYKEHV 558 >gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 559 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 226/394 (57%), Gaps = 19/394 (4%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L+D ++ G + + KI + D +I ++++GLRG GGAGF G KW F+ Sbjct: 177 NLADYLAAGGYKLLSKIRDGSLAVDTLIETMQSAGLRGLGGAGFPAGKKWGFVRSYPG-- 234 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + +N DE EPGT KDR + +PH +EG +IA+ A+ A + Y+R E+ L Sbjct: 235 PRLMTINGDEGEPGTFKDRYHLERDPHRTLEGALIAAHAVEAERIYFYMRDEYPAVLHIL 294 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + A GL+ G+ I + GAGAYICGEE+A+LES+EGK+G PR +PP+ Sbjct: 295 RTEIAALEAGGLITP----GF---IELRRGAGAYICGEESAMLESIEGKRGLPRHRPPYI 347 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NVE++ + I+ G W++G G+ G + +S+SG V P Sbjct: 348 AEVGLFGRPTLNHNVETLWWIRDIVDNGPEWFTGLGKPGFPGLRSWSVSGRVREPGVKLA 407 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG-LKEMGSGL 315 +T ELI++HCGG+ G A +PGG+S LPA + +D+ G L G+ + Sbjct: 408 PAGVTVRELIDEHCGGMAAG-HAFKAYLPGGASGGVLPAA-LGDIPLDFGGELARQGAFV 465 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ AV+V DI +A L F++HESCGQCTPCREGTG ++ ++E +G + I Sbjct: 466 GSHAVVVFSDKDDIREATLNLLRFFEHESCGQCTPCREGTGKLVSLLES--RGPIDETAI 523 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L V ++ +IC LG AA P+ L+ +FR Sbjct: 524 RDLETVLRDA---SICGLGQAAPNPVNHLLTHFR 554 >gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina] Length = 610 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 206/390 (52%), Gaps = 25/390 (6%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESE 88 V ++L+ G + + EV+ SGLRGRGGAGF+T +KW F C + P Y+V NADE E Sbjct: 199 VRRLLDAGAEAALAEVERSGLRGRGGAGFTTALKWRF----CREAPGTDRYVVCNADEGE 254 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++ +IEG + + IGA F+Y+RGE+ L++ + A GL Sbjct: 255 PGTFKDRVLLTDYTDLVIEGMTVCAGVIGARRGFLYLRGEYRYLLPHLESVLQRRRAEGL 314 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG+ G+D DI +H GAGAYICGEE+AL+ESLEGK+G R +PPFP G PT Sbjct: 315 LGTRILGADGFDFDIEIHLGAGAYICGEESALIESLEGKRGVTRKRPPFPVTSGFDDQPT 374 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVE+ +++ G W G G + + G+K+ S+SG P E +++ Sbjct: 375 VVNNVETFLAAARVVQWGGYWLRGEGTDQSAGSKILSVSGDCARPGIYEYPFGTPVHQVL 434 Query: 267 EKHCGGIRGGWDNLLAV-IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 CG +N AV I G + PA R I+ ++ L GS ++ D Sbjct: 435 SD-CGA-----ENTQAVQISGAAGATLSPADFDR--IIAFEDLPTAGS------FMIFDH 480 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 S D++ + + F+ HESCG CTPCR G + ++E++ G + ++ + + + Sbjct: 481 SRDLLDMVRNFAAFFAHESCGFCTPCRVGGALLRNLVEKVAAGQGSEYDLSEMRRIGTVM 540 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + C LG A + + F PLI R Sbjct: 541 RRASYCGLGHTAPNHVVNTLDKF-PLIYGR 569 >gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] Length = 562 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 204/369 (55%), Gaps = 18/369 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D + ++V SGLRG GGAGF +G KWSF+ R YL VN DE EPGT KDR + Sbjct: 209 DQVQDKVLESGLRGLGGAGFPSGKKWSFVRMEQGTR--YLAVNGDEGEPGTFKDRYYLER 266 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +EG +IA++A+ A FIY+R E+ L + A+G++ + GY Sbjct: 267 TPHVFLEGMLIAAWAVEAEKCFIYMRDEYPAVLHILAQEIAALEAAGIV----EAGY--- 319 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + GAGAYICGEE+A++ES+EGKKG PR +PPF A VG++ PT V+NVE++ V I Sbjct: 320 IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPFVAQVGIFNRPTLVHNVETLYWVTKI 379 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 R G + + G + +SISG V P T +LIE G + G Sbjct: 380 CREGPECLNTTVKNGRTGLRSYSISGRVKNPGVHLLPAGSTIMDLIEASGGMLDG--HEF 437 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 A PGG S LPA M MD+D L+ +G+ +G+AA++++ A + F+ Sbjct: 438 KAYQPGGPSAGLLPA-HMNDIPMDFDTLQAVGTFIGSAAIVILSDQDRARDAALNMLKFF 496 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 + ESCGQCTPCR G +++M+ + DLL ++ + +IC LG AA P Sbjct: 497 EDESCGQCTPCRVGCEKAVKLMQE------DTWDADLLTDLCDVMVDASICGLGQAAPNP 550 Query: 401 IQGLIKNFR 409 I+ +++F+ Sbjct: 551 IKLTLQHFK 559 >gi|161525535|ref|YP_001580547.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616] gi|189349737|ref|YP_001945365.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616] gi|160342964|gb|ABX16050.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616] gi|189333759|dbj|BAG42829.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616] Length = 525 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 206/361 (57%), Gaps = 6/361 (1%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGA F G+KW + + S + Y+V NADE + GT DR +M +P+ LIEG Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQASAKQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGM 206 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167 +IA A GA +IYVR E+ +L+AA+ +G LG + LG + ++ V GA Sbjct: 207 IIAGVATGATVGYIYVRSEYPHAIATLEAAIARAREAGWLGEHV-LGSAHAFELHVAKGA 265 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 G+Y+CGEETALLESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++ Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAF 325 Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 Y +G +RGT F ++G++ Y VE + +T EL+ GG G A + GG Sbjct: 326 YRDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GG 384 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 LP Q +DY+ +G+ +G +++ D ++++ + F ESCG+ Sbjct: 385 PLGTYLPEHQWD-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGK 443 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCR G+ + + R+ G +R+I LL ++ + ++CA+G +P+ + + Sbjct: 444 CTPCRIGSTRGVETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDH 503 Query: 408 F 408 F Sbjct: 504 F 504 >gi|169832066|ref|YP_001718048.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169638910|gb|ACA60416.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 539 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 147/411 (35%), Positives = 238/411 (57%), Gaps = 13/411 (3%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFS 61 Q R+ + GL + +++ ++R + + ++L G +++ V+ SGLRGRGGAGF Sbjct: 112 QQRVVLDNSGLIDPEDINEYIARDGYFALAEVLRSRAGPADVVDAVRRSGLRGRGGAGFP 171 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW F + P Y++ NADE +PG DR I+ PH ++EG +IA +A+GA Sbjct: 172 TGEKWFF--AAAQEGPEKYIICNADEGDPGAFMDRSILEGNPHAVLEGMLIAGYAVGAQE 229 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+ + GLLG S +DVDI + GAGA++CGEETA Sbjct: 230 GYVYVRAEYPLAVKRLEIAIRQAQKLGLLGKGILGSDFDFDVDIAL--GAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S G +G+PR++PP+P GLY PT +NNVE++A VP I+R G W++ G E ++ Sbjct: 288 LLRSAMGFRGEPRVRPPYPVEKGLYDKPTIINNVETLANVPAIIRNGPEWFAAMGTEGSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M I+ +++ G G + AV GG S +PA + Sbjct: 348 GTKIFSLAGQIKNTGLIEVPMGISLADIVYDIGAGPPPGR-RIKAVQTGGPSGGAVPA-E 405 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L+ +G+ +G+ +IV+D + ++ F HESCG CT CR G Sbjct: 406 LLDVPVDYESLQAVGTIMGSGGLIVLDNTDCMVDLAKFYMQFAAHESCGACTLCRVGVVH 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ ++ER+ +G ++ L E++ ++ ++C LG AA P+ +K F Sbjct: 466 VVDILERITQGEGTLDDLQELEELAYDVRDASLCGLGQTAANPVLSTMKYF 516 >gi|221201245|ref|ZP_03574285.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2M] gi|221206301|ref|ZP_03579314.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2] gi|221173610|gb|EEE06044.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2] gi|221179095|gb|EEE11502.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2M] Length = 525 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 206/361 (57%), Gaps = 6/361 (1%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGA F G+KW + + S + Y+V NADE + GT DR +M +P+ LIEG Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQASAKQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGM 206 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167 +IA A GA +IYVR E+ +L+AA+ +G LG + LG + ++ V GA Sbjct: 207 IIAGVATGATVGYIYVRSEYPHAIATLEAAIARAREAGWLGEHV-LGSAHAFELHVAKGA 265 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 G+Y+CGEETALLESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++ Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAF 325 Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 Y +G +RGT F ++G++ Y VE + +T EL+ GG G A + GG Sbjct: 326 YRDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGHPARAAQV-GG 384 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 LP Q +DY+ +G+ +G +++ D ++++ + F ESCG+ Sbjct: 385 PLGTYLPEHQWD-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGK 443 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCR G+ + + R+ G +R+I LL ++ + ++CA+G +P+ + + Sbjct: 444 CTPCRIGSTRGVETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDH 503 Query: 408 F 408 F Sbjct: 504 F 504 >gi|221213582|ref|ZP_03586556.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD1] gi|221166371|gb|EED98843.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD1] Length = 525 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 206/361 (57%), Gaps = 6/361 (1%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGA F G+KW + + S + Y+V NADE + GT DR +M +P+ LIEG Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQASAKQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGM 206 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167 +IA A GA +IYVR E+ +L+AA+ +G LG + LG + ++ V GA Sbjct: 207 IIAGVATGATVGYIYVRSEYPHAIATLEAAIARAREAGWLGEHV-LGSAHAFELHVAKGA 265 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 G+Y+CGEETALLESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++ Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAF 325 Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 Y +G +RGT F ++G++ Y VE + +T EL+ GG G A + GG Sbjct: 326 YRDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GG 384 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 LP Q +DY+ +G+ +G +++ D ++++ + F ESCG+ Sbjct: 385 PLGTYLPEHQWD-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGK 443 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCR G+ + + R+ G +R+I LL ++ + ++CA+G +P+ + + Sbjct: 444 CTPCRIGSTRGVETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDH 503 Query: 408 F 408 F Sbjct: 504 F 504 >gi|260427443|ref|ZP_05781422.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp. SE45] gi|260421935|gb|EEX15186.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp. SE45] Length = 506 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/391 (36%), Positives = 211/391 (53%), Gaps = 6/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL + G + + L + I +EVK SGLRGRGGAGF TG+KW + +DR Sbjct: 109 SLDQYEALGGLVGLRRALGMTGEQITDEVKLSGLRGRGGAGFPTGIKWDTVRMAHADR-K 167 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG IA GA F+Y R E+ ++ Sbjct: 168 YIVCNADEGDSGTFADRMIMEGDPFCLIEGMTIAGIGCGATKGFVYTRSEYPDAVAVMRR 227 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ A+G+LG + G ++ V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 228 AIEIARAAGVLGPDVLGSGKAFELEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 287 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNV S+A VP I +GA +Y+ FG ++GT I+G+V + E + Sbjct: 288 LEGAFGKPTVVNNVISLATVPVIFEKGAEFYANFGLGRSKGTIPLQIAGNVRHGGLFETA 347 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + +++E GG G + AV GG L Q Y+ G+ +G Sbjct: 348 FGMKLGQIVEDLGGGSASG-RAVKAVQVGGPLGAYLGTDQFD-TPFGYEEFDGEGALIGH 405 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D++ F ESCG+CTPCR G + ++R+ G A+ + L Sbjct: 406 AGLVVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETLDRIAAGDAEA--VPL 463 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + ++ ++CALG +P+ ++ F Sbjct: 464 LTDLCETMKDGSLCALGGFTPYPVMSALRLF 494 >gi|297569386|ref|YP_003690730.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2] gi|296925301|gb|ADH86111.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2] Length = 601 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 230/392 (58%), Gaps = 31/392 (7%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWS-------FMPK-----------VCSDRP----HYL 80 II+E+ SGLRGRGG G+ G+KWS F+P+ +DRP Y+ Sbjct: 184 IIDEITRSGLRGRGGGGYPVGLKWSTVAKAGAFVPQAGRSSRQSAGATAADRPDGPRKYV 243 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE +PG DR ++ PH ++EG IA++A+GA ++YVR E+ E L+ A+ Sbjct: 244 ICNADEGDPGAFMDRSVLECAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVERLRKAI 303 Query: 141 DECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + GLLG N S + V+I + GAGA++CGEETALL S+EG++GQPR +PP+PA Sbjct: 304 VQAEKRGLLGRNIGGSAFNFQVEIRL--GAGAFVCGEETALLASIEGRRGQPRPRPPYPA 361 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+GCPT +NNVE++A V I+ RGA W++ G E ++GTK+F+++G + +E Sbjct: 362 EHGLWGCPTLINNVETLANVAAIINRGADWFAALGTEKSKGTKVFALAGKIKNTGLIEVP 421 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M I+ E++ + G GG + AV GG S C+PA + DY+ L+ GS +G+ Sbjct: 422 MGISIHEIVHEMGSGEVGG---IKAVQTGGPSGGCIPAEHFHLPV-DYESLQAEGSIMGS 477 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +I+MD ++ F ESCG+C PCR GT ++ ++E++ +G ++ Sbjct: 478 GGMIIMDEGAAMVDVARFFMEFCVEESCGKCAPCRVGTTQVLLLLEKIGRGEGTAADLGQ 537 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L E+ ++ ++C LG +AA P+ ++ FR Sbjct: 538 LEELCHLLQQTSLCGLGQSAANPVLSTLRFFR 569 >gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus] Length = 604 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 204/383 (53%), Gaps = 15/383 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + II+ + S LRGRGGAGFSTG+KW SD Y++ NADE EPGT KDR ++ Sbjct: 206 EQIIDRIIESKLRGRGGAGFSTGLKWQLCRTAVSD-DKYIICNADEGEPGTFKDRVLLTR 264 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYD 158 P + G +IA+ AIG+ +Y+R E+I ++ L+ + E GLLG+ + G+D Sbjct: 265 SPKKVFMGMIIAARAIGSRNGILYLRWEYIYLKDYLERQLQELRDEGLLGARIGGQSGFD 324 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI + GAGAYICG+E+AL+ES EGK+G PR+KPPFP G G PT VNNVE+ A Sbjct: 325 FDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQEGYLGKPTCVNNVETFAAAA 384 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I+ G +W+ G + GT+L S++G + P E +T +E++ G Sbjct: 385 RIMEEGPNWFRALGTPESTGTRLLSVAGDCSRPGIYEVEWGVTLNEVLTTV------GAR 438 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 + AV G S C+ + M Y+ + G A + + D+++ + Sbjct: 439 DARAVQISGPSGQCVSVAEDGERRMAYEDISCNG------AFTIFNTERDLLEIVKDFMQ 492 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ ESCG C PCR G + + +E ++ G A ++++D + ++ + C LG + Sbjct: 493 FFVDESCGICVPCRVGNIDLHKKVELVIAGKACQKDLDDVVSWGALVKKTSRCGLGATSP 552 Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421 PI + F + +R+ + + Sbjct: 553 NPILTTLDKFPEIYTKRLRKQKK 575 >gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 585 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 139/349 (39%), Positives = 204/349 (58%), Gaps = 19/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW + + P YLVVNADE EPGT KDR + PH ++EG + ++ A+GA Sbjct: 231 FPTARKWQAVRAGAA--PRYLVVNADEGEPGTFKDRHYLETAPHRVLEGALASALAVGAA 288 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ L+ A+ E A+GL+ G+ I++ GAGAYICGEE+AL+ Sbjct: 289 AIYVYLRDEYPGLHAVLREAIAELEAAGLVAP----GF---IVLRRGAGAYICGEESALI 341 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PR +PPF A GL+G PT VNNVE++ +P + + ++G GR G Sbjct: 342 ESLEGKPGKPRHRPPFVAEAGLFGRPTLVNNVETLYWIPLLA--AGAAFAGEGRRGRSGL 399 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + FS+SG VN P IT EL+++HCGG++ G LLA +PGG+S LPA + Sbjct: 400 RSFSVSGRVNKPGVHLAPAGITLRELVDEHCGGLQPG-HRLLAYLPGGASGGILPAA-LA 457 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+ GS +G+AA+IV+ D+ L F+ ESCGQCTPCR GT ++ Sbjct: 458 DLPLDFDTLQPHGSFIGSAAIIVLSDQDDLRAVADNLLAFFADESCGQCTPCRLGTEKLL 517 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ ++ L +++ + +IC LG AA P+ L++ F Sbjct: 518 TLLR------TDDWDVARLQALAQTLRDASICGLGQAAPNPVSSLLRFF 560 >gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] Length = 563 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 22/379 (5%) Query: 34 KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMP-KVCSDRPHYLVVNADESEPG 90 + L +G DW + ++V ASGLRG GGAGF +G KW F+ C P YL VN DE EPG Sbjct: 199 QALREGGDWEDVQDKVLASGLRGLGGAGFPSGKKWGFVRGNAC---PRYLAVNGDEGEPG 255 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 T KDR + PH +EG +IA++A+ A FIY+R E+ + L + +G++ Sbjct: 256 TFKDRYYLERMPHLFLEGMLIAAWAVEADTCFIYMRDEYPAVLDILALEIKALEGAGIVA 315 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF A VG++ PT V+N Sbjct: 316 E----GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQVGIFDRPTLVHN 368 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270 VE++ V I R G + + G + +S+SG V P T ++IE Sbjct: 369 VETLLWVARICREGPEVLNSTEKNGRVGLRSYSVSGRVAQPGVYLLPAGSTITDIIEA-A 427 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GG+ G A PGG S LPA + +D+D L+ +G+ +G+AAV+V+ Sbjct: 428 GGMAAG-HVFKAYQPGGPSSGLLPA-TINDVPLDFDTLQPLGTFIGSAAVVVLSDQDRAR 485 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 A + F++ ESCGQCTPCR G +++M+ A + LL ++ + +I Sbjct: 486 DAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADAWDQPLLEDLCTAMADASI 539 Query: 391 CALGDAAAWPIQGLIKNFR 409 C LG AA PI+ ++++F+ Sbjct: 540 CGLGQAAPNPIKLVMQHFK 558 >gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] Length = 561 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 139/349 (39%), Positives = 195/349 (55%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ + P YL VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 227 FPSGRKWGFV--RAAQGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 284 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ E L + +GL+ GY I + GAGAYICGEE+A++ Sbjct: 285 TCFIYMRDEYPAVLEILAREIAALEEAGLVAP----GY---IDLRRGAGAYICGEESAMI 337 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PPF A VG++G PT VNNVE++ V +LR G SG + +G Sbjct: 338 ESIEGKRGLPRHRPPFVAQVGIFGRPTLVNNVETLLWVARVLREGPEILSGVEKNGRKGL 397 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + FS+SG V P T ++IE CGG+ G + A PGG S LPA M Sbjct: 398 RSFSVSGRVKNPGVHLLPAGSTMQDIIEA-CGGMLDG-HSFKAYQPGGPSAGLLPA-SMS 454 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+E G+ +G+AA++V+ A + F++ ESCGQCTPCR G + Sbjct: 455 DIPMDFDVLQEHGTFIGSAAIVVLSDRDSARDAALNMLRFFEDESCGQCTPCRVGCEKAV 514 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A + LL E+ + +IC LG AA PI+ +K+F Sbjct: 515 KLMQ------ADTWDQPLLEELCTAMADASICGLGQAAPNPIRLTMKHF 557 >gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium radiotolerans JCM 2831] Length = 572 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 134/353 (37%), Positives = 195/353 (55%), Gaps = 21/353 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + VN DE EPGT KD+ + +PH +EG +I + + A Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAP 289 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ RE L + + G I + GAGAYICGEE++L+ Sbjct: 290 EVYIYLRDEYPISREILTREIAKLPEGG-----------PRIHLRRGAGAYICGEESSLI 338 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR KPPFP VGL+ PT +NN+E++ V ++ RG W+ GR + G Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGGDWWKSHGRNDRVGL 398 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELI+++CGG+ G A +PGG+S LPA M Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGMADG-HTFAAYLPGGASGGILPA-SMN 456 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+++ D+ A L F++ ESCGQCTPCR GT Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDRDDVRGAALNLMRFFEDESCGQCTPCRSGTQKAR 516 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +ME+ V + +LL E+S+ + +IC LG AA+ P+ +IK F L Sbjct: 517 ILMEQGVW------DTELLGELSQCMRDASICGLGQAASNPLSSVIKYFPDLF 563 >gi|148554394|ref|YP_001261976.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1] gi|148499584|gb|ABQ67838.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1] Length = 516 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 144/411 (35%), Positives = 214/411 (52%), Gaps = 36/411 (8%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-- 77 L+ ++ G W ++ +++ +KASGLRGRGGAGF TG+KW V P Sbjct: 105 LAAYVASGGWRGLEAARAMAPQAVVDAIKASGLRGRGGAGFPTGIKWQ---TVLDAGPAE 161 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++V NADE + GT DR +M +P+ LIEG IA+ A+GA ++Y+R E+ ++Q Sbjct: 162 KFVVCNADEGDSGTFADRMLMEGDPYCLIEGMAIAAHAVGADHGYVYIRSEYPFAIRAMQ 221 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++ ++ L + V GAGAY+CGEETALL+S+EGK+GQ R KPP PA Sbjct: 222 GAIER---------SAALLAPFTLEVRVGAGAYVCGEETALLDSIEGKRGQVRAKPPLPA 272 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT +NNV S+A VP IL GA Y+ G +RGT ++G++ E Sbjct: 273 IEGLFGQPTVINNVLSLAAVPFILSEGAEAYAAVGLGRSRGTMPVQLAGNIRNGGLFEIG 332 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 I+ EL+E GG G + AV GG LP M DY+ G+ +G Sbjct: 333 FGISLGELVETVGGGTASGRP-VRAVQVGGPLGAYLPP-SMFDLPFDYESFAAAGALIGH 390 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG--------- 368 A + V D + D+ + F ESCG+CTPCR G+ + ++R++ G Sbjct: 391 AGITVFDDTVDMAQMARFAMEFCAVESCGKCTPCRIGSTRGVETIDRIIAGGRGGDRVEA 450 Query: 369 IAQKR-----------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + Q R EI LL ++ ++ ++CALG +P+ + +F Sbjct: 451 LPQMRNAKARQKSVEQEIALLRDLCDTMKYGSLCALGGFTPYPVLSALNHF 501 >gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 489 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 216/384 (56%), Gaps = 4/384 (1%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 RG+ + + + I+NE+K SGLRGRGG GF TG+KW + +D+ Y+V NAD Sbjct: 30 RGYEALAEAVTNRQPADIVNEIKKSGLRGRGGGGFPTGLKWEITARNQADQ-KYVVCNAD 88 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG DR ++ +PH+++E + +AIGA +Y+R E+ + LQ A+ + Sbjct: 89 EGDPGAFMDRAVLEGDPHSVVEAMALCGYAIGATVGTVYIRAEYPLAIKRLQMAIKDARE 148 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G+LG G+D DI + +GAGA++CGEETAL+ S+EG++G+P KPPFPA G +G Sbjct: 149 AGVLGKRIFGSGFDFDIELKYGAGAFVCGEETALIHSMEGERGEPTTKPPFPAESGYWGK 208 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +NNVE+ A V IL G W++G G E ++GTK+F+++G V +E M T E Sbjct: 209 PTAINNVETFANVVPILLNGGDWFAGIGTEKSKGTKVFALAGKVRNVGLIEVPMGTTLHE 268 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 +I + GG G AV GG S L + I DYD L GS +G+ +IVMD Sbjct: 269 IIFEI-GGGILGGKKFKAVQTGGPSGGALTERDLDTPI-DYDNLVAKGSMMGSGGMIVMD 326 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 ++ F E+CG+CTPCR G+ + +++++ +G ++ L +S Sbjct: 327 EDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEILDKITRGEGTPEDLSRLKLLSTA 386 Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408 I+ +C LG PI + F Sbjct: 387 IKDTALCGLGQTMPNPILSTMSVF 410 >gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] Length = 565 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 210/379 (55%), Gaps = 20/379 (5%) Query: 32 VDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 V + L DW + +VK SGLRG GGAGF +G KW F+ + P YL VN DE EP Sbjct: 201 VLRDLRASGDWEVVQAQVKQSGLRGLGGAGFPSGTKWGFV--RANPGPRYLAVNGDEGEP 258 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR + PH +EG +IA++A+ A +IY+R E+ E L+ + +G+ Sbjct: 259 GTFKDRHYLERVPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLEILRREIAALEEAGI- 317 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 ++ G+ I + GAGAYICGEE+A++ES+EGK+G PR +PP+ A VGL+G PT V+ Sbjct: 318 ---AEPGH---IELRRGAGAYICGEESAMIESIEGKRGMPRHRPPYVAQVGLFGRPTLVH 371 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE++ + I R G S + G + +S+SG V P T ++I+ Sbjct: 372 NVETLHWIARICREGPEVLSATTHNDRVGLRSYSVSGRVARPGVYLLPAGSTILDIIDA- 430 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 GG+ G A PGG S LPA +D+D L+ +G+ +G+AAV+V+ Sbjct: 431 AGGMAEG-HVFKAFQPGGPSSGLLPASAA-DVPLDFDTLQPLGTFIGSAAVVVLSDQDRA 488 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 A + F++ ESCGQCTPCR G +++M+ A++ + LL E+ + + Sbjct: 489 RDAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------AERWDAGLLSELCTAMADAS 542 Query: 390 ICALGDAAAWPIQGLIKNF 408 IC LG AA PI IK+F Sbjct: 543 ICGLGQAAPNPILSTIKHF 561 >gi|319795811|ref|YP_004157451.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS] gi|315598274|gb|ADU39340.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS] Length = 519 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 141/409 (34%), Positives = 217/409 (53%), Gaps = 5/409 (1%) Query: 2 LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ S++D + + + + L + ++ +V SGLRGRGGA F Sbjct: 100 LKKQERLTFARMGITDPVSVADYEAHEGYAGLRRALGLKPEEVVQQVLDSGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR M +P L+EG IA A GA Sbjct: 160 PAGIKWKTVMATPAAQ-KYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMTIAGIATGATK 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ ++ A+ +G LG N G + V GAG+Y+CGEETALL Sbjct: 219 GYVYIRSEYPHAIATMNEAIRAAETAGFLGDNILGSGRTFWLEVRKGAGSYVCGEETALL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA Y FG +RGT Sbjct: 279 ESLEGKRGIVRAKPPLPAITGLFGQPTLINNVITLASVPLILARGAEHYRDFGVGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T EL+ + GG G + AV GG LP Q Sbjct: 339 LPMQLAGNIKHGGLVEKAFGVTLRELLYDYGGGSASG-RPIKAVQVGGPLGAYLPESQWD 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G +G ++V D + D+ K F ESCG+CTPCR G+ + Sbjct: 398 -LPLDYEAYAAVGGTVGHGGIVVHDDTADLSKLARYAMEFCAIESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++++ + + LL ++ + ++CA+G +P+ + +F Sbjct: 457 EVIDKIRADNKRVEHVILLRDLCNTMVHGSLCAMGGMTPFPVLSALDHF 505 >gi|307292624|ref|ZP_07572470.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1] gi|306880690|gb|EFN11906.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1] Length = 526 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 147/420 (35%), Positives = 210/420 (50%), Gaps = 42/420 (10%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D W +D +++ VKASGLRGRGGAGF TG+KW + SD Sbjct: 104 SLQDYADHDGWRGLDAARAMPPQAVVDAVKASGLRGRGGAGFPTGIKWQTVLDAVSDA-K 162 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 ++V NADE + GT DR +M +P LIEG IA A+GA +IY+R E+ ++Q Sbjct: 163 FIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAGHGYIYIRSEYPFAIAAMQE 222 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ L + + +++ V GAGAY+CGEETALL+S+EGK+GQ R KPP PA Sbjct: 223 AI-------ALSAERIAPFTLEVRV--GAGAYVCGEETALLDSIEGKRGQVRAKPPLPAL 273 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT +NNV S+A VP IL +GA Y+ G +RGT ++G+V + E Sbjct: 274 AGLFGQPTVINNVLSLAAVPFILAKGAEAYAAVGFGRSRGTMPVQLAGNVKHGGLYEIGF 333 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT EL+ GG G + AV GG P G M DY+ + G +G A Sbjct: 334 GITLGELVNGIGGGTASGR-PVRAVQVGGPLGAYFPPG-MFDLPFDYEAFAQAGGLIGHA 391 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG---------- 368 + V D S D+ F ESCG+CTPCR G+ + V++R++ G Sbjct: 392 GITVFDDSLDMAHMARFAMEFCSVESCGKCTPCRIGSTRGVEVLDRIIAGRDAPAPVPTD 451 Query: 369 --------------------IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + + LL ++ ++ ++CALG +P+ + +F Sbjct: 452 QPWEGYLKTALNSRTPDRIDTGLEAQTTLLRDLCDTMKYGSLCALGGFTPYPVLSALDHF 511 >gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] Length = 588 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 196/355 (55%), Gaps = 16/355 (4%) Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F + D HY++ NADE EPGT KDR ++ H + EG + + IGA ++ Sbjct: 216 MKWKFCREAKGD-AHYVICNADEGEPGTFKDRILLTSHAHAVFEGMTLCGYVIGAQKGYL 274 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181 Y+R E+ L A + +GLLG+ + G+D DI + GAGAYICGEE++L+ES Sbjct: 275 YLRAEYRYLLPELYAVLSRRQQAGLLGAGILGQTGFDFDIDIIVGAGAYICGEESSLIES 334 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +E K+G PR++PPFP G G PT VNNVE++A I G+ W++ G + + GTK+ Sbjct: 335 MEQKRGIPRVRPPFPVTSGFLGQPTVVNNVETLAAAAQIAIHGSEWFNTQGSDKSDGTKI 394 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 S+SG P E ++ ++++ CG +N+ A+ GG S + + Sbjct: 395 LSVSGDCTTPGIYEYPFGVSIQKILDD-CGA-----ENVQAIQVGGPSGTLIGPDEFERK 448 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + G +++ +G + ++ D++ I + F+ HESCG CTPCR GT + Sbjct: 449 L----GFEDLATG---GSFMIFGAERDLLAVISNFAHFFAHESCGFCTPCRVGTSLLKNG 501 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++++V G + ++D +Y ++ ++ R+ C LG AA P+ ++ F L EER+ Sbjct: 502 LDKIVSGHGTRYDMDEMYRMATLVKRRSHCGLGQTAANPVLDALQRFPKLFEERL 556 >gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16] gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16] Length = 626 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 131/333 (39%), Positives = 191/333 (57%), Gaps = 5/333 (1%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V N DE +PG DR IM PH++IEG +IA A G+ +IYVR E+ L+ Sbjct: 220 YVVCNGDEGDPGAFMDRSIMEGNPHSIIEGMLIAGVAAGSDEGYIYVRAEYPLAVSRLRN 279 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ GLLG + LG D +H GAGA++CGE +AL S+EG +G PR+KPP Sbjct: 280 AIARAEELGLLGDHI-LGTDFSFHLHVNRGAGAFVCGEGSALTASIEGNRGMPRVKPPRT 338 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+ PT +NNVE+ + VP I+R G+ WY G E + GTK F+++G+V +E Sbjct: 339 VEHGLWAQPTVLNNVETFSTVPLIIRNGSEWYRSIGTEKSPGTKAFALTGNVVNTGLIEV 398 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T E+I GGI+ G AV GG S CL + MD+D LK++G+ +G Sbjct: 399 PMGTTLREVIFDIGGGIKDG-KKFKAVQIGGPSGGCLTEEHL-DMPMDFDSLKKVGAMIG 456 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++VMD T +++ F ++ESCG+C PCREGT M+ ++ R+V ++D Sbjct: 457 SGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTRRMLEILTRIVNNEGSLEDLD 516 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 LL ++ I ++C LG +A P+Q +K FR Sbjct: 517 LLETLANTITETSLCGLGQSACKPVQSTLKYFR 549 >gi|119385582|ref|YP_916637.1| NADH dehydrogenase (quinone) [Paracoccus denitrificans PD1222] gi|119376177|gb|ABL70941.1| formate dehydrogenase beta subunit [Paracoccus denitrificans PD1222] Length = 513 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 146/399 (36%), Positives = 219/399 (54%), Gaps = 22/399 (5%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+S+ + G + + +E G + I+ EV SGLRGRGGAGF TG+KW + + R Sbjct: 107 SVSEYEAHGGLVGLSRAIEIGPERIVEEVTESGLRGRGGAGFPTGIKWKTVAGAKAAR-K 165 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + G+ DR +M +P LIEG IA A GA ++Y+R E+ ++A Sbjct: 166 YIVCNADEGDSGSFADRMLMEGDPLVLIEGMAIAGIATGAVQGYVYIRSEYPDAIRLMEA 225 Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + +G+LG + S YD+++ V GAGAY+CGEET+LL SLEGK+G R KPP Sbjct: 226 AIGKARQAGILGQSVLGSAHAYDMEVRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPI 283 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G G PT VNNV S+A VP IL G + Y+ G ++GT I+G+V Y E Sbjct: 284 PALEGFLGRPTVVNNVISLASVPWILSHGGAEYAKLGIGRSKGTIPIQIAGNVKYGGLFE 343 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPC----LPAGQMRGAIMDYDGLK 309 + ++ ++I + GG G A + P GS +P +P G Y+ L Sbjct: 344 AAFGMSLGQIINEVGGGTASGRPVKAAQVGGPLGSYIPHWNFDVPFG--------YEELA 395 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 LG A + V D + D++K F ESCG+CTPCR G+ + ++R+ +G Sbjct: 396 GKEGLLGHAGITVFDDTADMLKLARFAMEFCAVESCGKCTPCRIGSIRGVETIDRIAQG- 454 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + I +L ++ ++ ++CALG A +P+ + +F Sbjct: 455 -DETGIAILTDLCNTMKWGSLCALGGFAPFPVMSALTHF 492 >gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 620 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 145/404 (35%), Positives = 221/404 (54%), Gaps = 8/404 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + +S G + ++ + L + +I+ V +GLRGRGG GF G KW+ + S Sbjct: 148 RDVDHYISLGGYASLARALSMSPEEVIDWVTRAGLRGRGGGGFPAGQKWASC-RSASGPQ 206 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +++ N DE +PG DR +M +PH+++EG +I + A+GA FIYVR E+ E+L Sbjct: 207 KFVLANGDEGDPGAFMDRSLMEGDPHSILEGMIIGAHAVGASKGFIYVRDEYPLAVENLA 266 Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+ E GLLG S L +DVDI G GA++CGE +AL+ S+EG+ G+PR+K Sbjct: 267 HAIREARRLGLLGRRILGSDLSFDVDIC--RGGGAFVCGESSALMASIEGRPGEPRVKYI 324 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 GL+ CPT +NNVE+ A VP I+R G Y G +++ GTK+FS+ G V V Sbjct: 325 RSTERGLWECPTVLNNVETWANVPIIIREGVDGYRSLGTKDSPGTKVFSLVGKVRRSGLV 384 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T E+I + GG+ G + AV GG S CLP ++ + D+D L GS Sbjct: 385 EVPMGTTLREIIFEIGGGVM-GRNRFKAVQTGGPSGGCLPESKLDLPV-DFDRLTREGSM 442 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +IVMD + ++ F + ESCG+C PCREG M ++E L + + Sbjct: 443 MGSGGMIVMDHRSCMVDVARYFVKFLEGESCGKCAPCREGLKAMGEILEDLCSRRGRPGD 502 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++L + + +C LG AA P+ +++F E DQ Sbjct: 503 VEMLLFMGNALTDTALCGLGQTAANPVLSTLRHFMEEYREHQDQ 546 >gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] Length = 566 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 22/378 (5%) Query: 34 KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 K L G +W + +VK +GLRG GGAGF +G KW F+ ++ P YL VN DE EPGT Sbjct: 204 KELRGGGNWEAVQEKVKEAGLRGLGGAGFPSGTKWGFV--RANEGPRYLAVNGDEGEPGT 261 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR + PH +EG ++A++A+ A AFIY+R E+ E L+ + + ++ Sbjct: 262 FKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLEILRREITALEEAAIV-- 319 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + GY I + GAGAYICGEE+A++ES+EGK+G+PR +PPF A VG++G PT V+NV Sbjct: 320 --EPGY---IALRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNV 374 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++ V I R G + + +G + +S+SG V P T ++IE CG Sbjct: 375 ETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPAGSTITDIIEA-CG 433 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+ G A PGG S LPA M +D+D L+ GS +G+AAV+V+ Sbjct: 434 GMLEG-HAFKAYQPGGPSSGLLPA-SMNDVPLDFDTLQPHGSFIGSAAVVVLSDQDSARD 491 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTI 390 A + F++ ESCGQCTPCR G E+ VK +++K+ + DLL E+S + +I Sbjct: 492 AALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWDQDLLEELSTAMVDTSI 544 Query: 391 CALGDAAAWPIQGLIKNF 408 C LG AA PI+ IK+F Sbjct: 545 CGLGQAAPNPIRLTIKHF 562 >gi|251770991|gb|EES51575.1| NADH dehydrogenase (quinone) [Leptospirillum ferrodiazotrophum] Length = 475 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 160/421 (38%), Positives = 234/421 (55%), Gaps = 10/421 (2%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAG 59 ++ DR+ TN SL+ G + + ++L +I E+K SGLRGRGG+G Sbjct: 27 IMEGPDRVLTNPAIFGDPSLASYERGGGYKGLRRVLSGLSPSDVIAEIKESGLRGRGGSG 86 Query: 60 FSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 F T +KW KV + R Y+V N E EPG+ KD ++ PH ++EG +IA FA+ Sbjct: 87 FPTALKWE---KVANHRVPVRYVVANGSEGEPGSHKDHYLISRSPHQILEGMIIACFAVS 143 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A ++V+ F L+ A +E A+GLLG+N G+ VDI + G AYI GEET Sbjct: 144 AKSGHLFVKESFPEGINILRKAREEALAAGLLGNNILGSGFSVDIEIFVGPAAYIAGEET 203 Query: 177 ALLESLEGKKGQPRLKPPFPAN-VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 ALLE+LEG+ +PR KPPF +GLY PT VNNVE+ A V IL G + G Sbjct: 204 ALLEALEGRVPRPRPKPPFYPTEMGLYNKPTVVNNVETYAHVSRILAEGTVKFRERGTPK 263 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + GT +FS+SG V P VE + + + L+ + GG G + GG S LPA Sbjct: 264 SPGTMIFSVSGSVRRPVVVELPLGFSLERLLYDYAGGPLPG-ETFQCFFTGGPSFGILPA 322 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 ++ ++YD L+ G+GLG+A +IV+ I+ S FY+ SCGQC PCR GT Sbjct: 323 REID-TPLEYDALRAKGTGLGSAGIIVLGSKDSILATTAAFSEFYEKGSCGQCPPCRLGT 381 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + + +E L+ G + I+ L +V+K I+GR C L A+A+ ++ L+++F PL+ E Sbjct: 382 ESLHQTLEGLMNGQNSEDGIERLLKVTKMIKGRGNCGLITASAFMVESLLEHFTPLLREE 441 Query: 416 I 416 + Sbjct: 442 L 442 >gi|87198757|ref|YP_496014.1| NADH dehydrogenase (quinone) [Novosphingobium aromaticivorans DSM 12444] gi|87134438|gb|ABD25180.1| formate dehydrogenase beta subunit [Novosphingobium aromaticivorans DSM 12444] Length = 512 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 145/411 (35%), Positives = 210/411 (51%), Gaps = 33/411 (8%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G W + + E G I +V SGLRGRGGAGF G+KW+ + S Sbjct: 100 SLDDYAASGGWQGLARAREIGPVSTIAQVTESGLRGRGGAGFPAGIKWTTVAN-ASGGTK 158 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + T DR +M +P LIEG IA FA+GA +++Y+R E+ E ++ Sbjct: 159 YIVCNADEGDSATFADRMVMEGDPFMLIEGMAIAGFAVGAGKSYVYIRSEYPHAIEKMEK 218 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 AV ++ L ++ V GAGAY+CGEET+LL SLEGK+G+ R KPP PA Sbjct: 219 AVR---------LSAALVAPFEVEVRVGAGAYVCGEETSLLNSLEGKRGEVRAKPPLPAL 269 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNNV ++A VP IL +GA Y+ G +RGT ++G+V + E Sbjct: 270 EGLFGKPTVVNNVLTLAAVPFILAQGAQEYANVGLGRSRGTMPIQLAGNVRHGGLFEVGF 329 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT EL+ + GG G + AV GG P DY+ +G A Sbjct: 330 GITLGELVNEIGGGTASGRP-VRAVQVGGPLGAYHPPSDFH-LPFDYEAFAAADGLIGHA 387 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL----------VKG 368 + V D + D+ F ESCG+CTPCR G+ + +++R+ V+ Sbjct: 388 GITVFDDTADMSAQARFAMEFCAAESCGKCTPCRIGSTRGVELIDRIRARSGRRPDRVEA 447 Query: 369 IAQKR-----------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + Q EI LL ++ + ++ ++CALG +P+ ++NF Sbjct: 448 LPQMHNARKAERSLADEITLLEDLCETMKFGSLCALGGFTPYPVLSALRNF 498 >gi|238020589|ref|ZP_04601015.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147] gi|237867569|gb|EEP68575.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147] Length = 417 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 199/383 (51%), Gaps = 19/383 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRPHYLVVNADE 86 DN+ K+LE +GL G GGAGF T KW+ M P DR Y+V NA+E Sbjct: 40 DNIAKVLED-----------AGLCGMGGAGFPTHRKWTAMAESPSETGDR--YVVCNANE 86 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EPGT KDR ++ H PH +IEG +IA+ A+ +Y+ + + A+ + Sbjct: 87 DEPGTFKDRFLLEHAPHQVIEGALIAAVYTRANNIILYINPHLTESLAATREAIAQWQKH 146 Query: 147 GLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 L + LG + I V +G YI GEETA++ L G P+ KPPFP G+ G P Sbjct: 147 ALFQRIEAHLGKPLTIKVTESSGRYIGGEETAVISWLNGGFPFPQYKPPFPFQKGVAGEP 206 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T +NN E++A V ILR GA WY G GR N GTKL+S+SG V E M IT EL Sbjct: 207 TLLNNTETLAHVSHILRNGAEWYRGLGRANGVGTKLYSLSGDVLNEGLFELPMGITLREL 266 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 I+ + GG+ G AV GG S L A + +D+ KE SGLGT A+IV+ Sbjct: 267 IDNYGGGMLEG-RTFKAVFMGGPSNNILTAKDLD-VPLDFVSAKERNSGLGTGAMIVVSE 324 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 T I++ F+ + SCGQC PC+ GT + R++ER+ G + + ++ L + + Sbjct: 325 GTSIVRKTADYIQFFANNSCGQCPPCKGGTYQLARLVERVDNGTSTEDDLHALQNLVNIM 384 Query: 386 EGRTICALGDAAAWPIQGLIKNF 408 G C L AA + ++ F Sbjct: 385 PGAGRCGLITGAATVVASSMRTF 407 >gi|294146591|ref|YP_003559257.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium japonicum UT26S] gi|292677008|dbj|BAI98525.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium japonicum UT26S] Length = 526 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 147/420 (35%), Positives = 210/420 (50%), Gaps = 42/420 (10%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D G W +D +++ VKASGLRGRGGAGF TG+KW + SD Sbjct: 104 SLQDYADHGGWRGLDAARAMAPQAVVDAVKASGLRGRGGAGFPTGIKWQTVLDAVSDA-K 162 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 ++V NADE + GT DR +M +P LIEG IA A+GA +IY+R E+ +++ Sbjct: 163 FIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAGHGYIYIRSEYPFAIAAMRE 222 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ L + + +++ V GAGAY+CGEETALL+S+EGK+GQ R KPP PA Sbjct: 223 AI-------ALSAERIAPFTLEVRV--GAGAYVCGEETALLDSIEGKRGQVRAKPPLPAL 273 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT +NNV S+A VP IL GA Y+ G +RGT ++G+V + E Sbjct: 274 SGLFGQPTVINNVLSLAAVPFILAEGAEAYAAVGFGRSRGTMPVQLAGNVKHGGLYEIGF 333 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT EL+ GG G + AV GG P M DY+ + G +G A Sbjct: 334 GITLGELVNGIGGGTASGR-PVRAVQVGGPLGAYFPP-SMFDLPFDYEAFAQAGGLIGHA 391 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV------------ 366 + + D D+ F ESCG+CTPCR G+ + VM+R++ Sbjct: 392 GITLFDDMVDMAHMARFAMEFCAVESCGKCTPCRIGSTRGVEVMDRIIAARDSAPAVPAG 451 Query: 367 ---KGIAQK---------------REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +G QK + LL ++ ++ ++CALG +P+ + +F Sbjct: 452 RQWEGYLQKALNSRTPDRIDTGLEAQTALLRDLCDTMKHGSLCALGGFTPYPVLSALDHF 511 >gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] Length = 570 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 208/376 (55%), Gaps = 22/376 (5%) Query: 36 LEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 L G DW + ++ +GLRG GGAGF +G KW F+ + P YL VN DE EPGT K Sbjct: 210 LRAGGDWGAVQEQLLEAGLRGFGGAGFPSGKKWGFV--RANPGPRYLAVNGDEGEPGTFK 267 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 DR + PH +EG +IA++A+ A F+Y+R E+ E L+ + +G++ Sbjct: 268 DRWYLERTPHLFLEGMLIAAWAVEAEKVFLYMRDEYPAVLEILRREIAALENAGVIAP-- 325 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 GY + + GAGAYICGEE+A++ES+EGK+G PR +PP+ A VG++G PT V+N+E+ Sbjct: 326 --GY---VDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPYVAQVGVFGRPTLVHNIET 380 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 + + I R G + + +G + +S+SG V P T + I GG+ Sbjct: 381 LHWIARICREGPQVLNATEKNGRKGLRSYSVSGRVAEPGMYVLPAGSTITD-ITAAAGGM 439 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G A PGG S LPA M +D+D L+ GS +G+AAV+V+ A Sbjct: 440 AEG-HVFKAYQPGGPSSGLLPA-SMNDLPLDFDTLQPHGSFIGSAAVVVLSEHDSARAAA 497 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICA 392 + F++ ESCGQCTPCR G E+ VK + + R + LL E+S + +IC Sbjct: 498 LNMLRFFEDESCGQCTPCRVGC-------EKAVKLMQEDRWDQGLLEELSTAMVDASICG 550 Query: 393 LGDAAAWPIQGLIKNF 408 LG AA PI+ ++K+F Sbjct: 551 LGQAAPNPIRLVMKHF 566 >gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] Length = 565 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 146/416 (35%), Positives = 219/416 (52%), Gaps = 17/416 (4%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRG--HWDNVDKIL--EKGRDWIINEVKASGLRGRGGAG 59 D+D Y G +D + G H+ ++ +L + D +I ++ +GLRG GGAG Sbjct: 146 DRDLGAVAAYVPDGGWPNDPYASGEHHYRSLRALLSGQLSADEVITALQDAGLRGMGGAG 205 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + + Y + NADESEPGT KDR ++ +PH ++EG ++ GA Sbjct: 206 FPTGKKWELV-RAAEGAVKYAICNADESEPGTFKDRQLLAEQPHLVLEGLLMGMLVTGAE 264 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++++R E+ E L + + GL+G + G + + + G YI GEETAL Sbjct: 265 EGWVFIRHEYGPEEAVLHSEIGRLREQGLIGPDVLGTGRRLMLDIFTSPGGYILGEETAL 324 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LE +EG +G+PR KPPFP N GL+G PT +N+VE+ A VP I+ RGA W++ G G Sbjct: 325 LECMEGHRGEPRNKPPFPGNYGLWGKPTLMNSVETFADVPAIVARGADWWNAQGVNGATG 384 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 K F++SGHV P M T +LI+ GG+ GG + L AV PGG+S L + Sbjct: 385 LKFFAVSGHVERPGVYCVPMGTTIRDLIDV-AGGVAGGAE-LEAVQPGGASSNFLGPEHL 442 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+ L E GS LG+ A++VM TD + A + F+++ESCG+C PCR G+ Sbjct: 443 D-VPLDFGTLAEAGSMLGSGAMVVMAAGTDALAAATNVLRFFRNESCGKCVPCRVGS--- 498 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEG-----RTICALGDAAAWPIQGLIKNFR 409 + + L + E+D + +IC LG A P+ ++ R Sbjct: 499 TKAHDLLTDTLRSGGELDEARKARLLELELVLRKSSICGLGQVALGPVVSVLGRQR 554 >gi|164430970|gb|ABY55757.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila silvestris] Length = 222 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 1/174 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG +WIINEVK SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPEWIINEVKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174 +IY+RGEF E ++Q A+ E Y +GL+G ++ GY+ D+ +H GAGAYICGE Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYNFDVFMHRGAGAYICGE 222 >gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] Length = 576 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/391 (38%), Positives = 220/391 (56%), Gaps = 31/391 (7%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L D + G W+ V +VK +GLRG GGAGF +G KW F+ ++ P Sbjct: 212 TLKDLRANGDWEAVQA-----------KVKEAGLRGLGGAGFPSGTKWGFV--RANEGPR 258 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E L+ Sbjct: 259 YLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEILRR 318 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + +G++ + GY I + GAGAYICGEE+A++ES+EGK+G+PR +PPF A Sbjct: 319 EIKALEDAGIV----EAGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQ 371 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VG++G PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 372 VGIFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPA 431 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 T ++IE CGG+ G A PGG S LPA M +D+D L+ G+ +G+A Sbjct: 432 GSTITDIIEA-CGGMLEG-HTFKAYQPGGPSSGLLPA-SMHDVPLDFDTLQPHGTFIGSA 488 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDL 377 AV+V+ A + F++ ESCGQCTPCR G E+ VK +++K+ + L Sbjct: 489 AVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWDQGL 541 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L E+S + +IC LG AA PI+ +K+F Sbjct: 542 LEELSTAMVDASICGLGQAAPNPIRLTMKHF 572 >gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] Length = 574 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 194/349 (55%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ P YL VN DE EPGT KDR + +PH +EG +IA++A+ A Sbjct: 240 FPSGRKWGFV--RAEKGPRYLAVNGDEGEPGTFKDRFYLERQPHVFLEGMLIAAWAVEAE 297 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ E L+ + +G++ GY I + GAGAYICGEE+A++ Sbjct: 298 TCFIYMRDEYPAVLEILRREIAALETAGVVAP----GY---IDLRRGAGAYICGEESAMI 350 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PPF A VG++ PT VNNVE++ V +LR G S R +G Sbjct: 351 ESIEGKRGLPRHRPPFVAQVGIFDRPTLVNNVETLYWVTRVLREGKEILSDVERNGRKGL 410 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG VN P T ++IE G + G + A PGG S LPA M Sbjct: 411 RSYSVSGRVNKPGVHLLPAGSTITDIIEAAGGMLEG--HSFKAYQPGGPSSGLLPA-SMN 467 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+ G+ +G+AAV+V+ A + F++ ESCGQCTPCR G + Sbjct: 468 DIPLDFDTLQPHGTFIGSAAVVVLSDKDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 527 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A + + LL E+ + + +IC LG AA PI+ +K+F Sbjct: 528 KLMQ------ADRWDQPLLEELCQAMGDASICGLGQAAPNPIRLTMKHF 570 >gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] Length = 562 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 152/394 (38%), Positives = 225/394 (57%), Gaps = 23/394 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++ +D + G + + + G DW + +VK +GLRG GGAGF +G KW F+ ++ Sbjct: 185 ETFADYEAEGGYAALKDLRANG-DWEAVQAKVKEAGLRGLGGAGFPSGTKWGFV--RANE 241 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E Sbjct: 242 GPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEI 301 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L+ + +G++ + GY I + GAGAYICGEE+A++ES+EGK+G+PR +PPF Sbjct: 302 LRREIKALEEAGIV----EAGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPF 354 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VG++G PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 355 VAQVGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKKPGVHL 414 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ++IE CGG+ G A PGG S LPA M +D+D L+ G+ + Sbjct: 415 LPAGSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMNDIPLDFDTLQPHGTFI 471 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-E 374 G+AAV+V+ A + F++ ESCGQCTPCR G E+ VK +++K+ + Sbjct: 472 GSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWD 524 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL E+S + +IC LG AA PI+ +K+F Sbjct: 525 QGLLEELSTAMVDASICGLGQAAPNPIRLTMKHF 558 >gi|84499616|ref|ZP_00997904.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Oceanicola batsensis HTCC2597] gi|84392760|gb|EAQ04971.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Oceanicola batsensis HTCC2597] Length = 505 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 200/391 (51%), Gaps = 6/391 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL+D G + + L I+ EVK SGLRGRGGAGF TG+KW + + +++ Sbjct: 108 SLADYEGHGGLAGLRRALGMEAAAIVEEVKTSGLRGRGGAGFPTGIKWDTVRQARAEQ-K 166 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P +LIEG +IA GA F+Y+R E+ + Sbjct: 167 YIVCNADEGDSGTFADRMIMEGDPFSLIEGMIIAGLGTGATKGFVYIRSEYPDAIAIMDR 226 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ GLLG + G ++ V GAGAY+CGEET+LL SLEGK+G R KPP PA Sbjct: 227 AIRLARDGGLLGPDILGSGRAFEMEVRIGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 286 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNV S+A +P I +GA Y+ FG +RGT I+G+V + E + Sbjct: 287 LQGAFGRPTVVNNVLSLATIPVIFEKGAQHYADFGLGRSRGTMPIQIAGNVQHGGLYETA 346 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + L+ + GG G + + G + A Y+ G +G Sbjct: 347 FGLPLGTLVNEIAGGTASG--RPVKAVQVGGPLGAYFAPHQFDTPFGYEEFDGAGGLIGH 404 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A ++V D + D+ F ESCG+CTPCR G + ++R+ G I Sbjct: 405 AGIVVFDDTADMAGMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAGDPDATAI-- 462 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L ++ + + ++CALG +P+ + F Sbjct: 463 LTDLCETMTAGSLCALGGFTPYPVMSALHLF 493 >gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] Length = 576 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/391 (38%), Positives = 219/391 (56%), Gaps = 31/391 (7%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L D + G W+ V +VK +GLRG GGAGF +G KW F+ ++ P Sbjct: 212 TLKDLRANGDWEAVQA-----------KVKEAGLRGLGGAGFPSGTKWGFV--RANEGPR 258 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E L+ Sbjct: 259 YLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEILRR 318 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + +G++ + GY I + GAGAYICGEE+A++ES+EGK+G+PR +PPF A Sbjct: 319 EITALEEAGIV----EAGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQ 371 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VG++G PT V+NVE++ V + R G + + +G + +S+SG V P Sbjct: 372 VGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPA 431 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 T ++IE CGG+ G A PGG S LPA M +D+D L+ G+ +G+A Sbjct: 432 GSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMHDIPLDFDTLQPHGTFIGSA 488 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDL 377 AV+V+ A + F++ ESCGQCTPCR G E+ VK + +K+ + L Sbjct: 489 AVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMGEKKWDQGL 541 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L E+S + +IC LG AA PI+ IK+F Sbjct: 542 LEELSAAMVDTSICGLGQAAPNPIRLTIKHF 572 >gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] Length = 580 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 199/349 (57%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ ++ P YL VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 246 FPSGKKWGFV--RANEGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 303 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 AFIY+R E+ E L+ + +G++ + GY I + GAGAYICGEE+A++ Sbjct: 304 KAFIYMRDEYPAVLEILRREIRALEEAGIV----EAGY---IDLRRGAGAYICGEESAMI 356 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G+PR +PPF A VG++G PT V+NVE++ + I R G + + +G Sbjct: 357 ESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNVETLYWIAKINREGPECLNTVEKNGRKGL 416 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P T ++IE G + G + A PGG S LPA M Sbjct: 417 RSYSVSGRVKNPGVHLLPAGSTILDVIEAAGGMLDG--HSFKAYQPGGPSSGLLPA-HMN 473 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+ GS +G+AAV+V+ A + F++ ESCGQCTPCR G + Sbjct: 474 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAV 533 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A+K + LL E+S+ + +IC LG AA PI+ +K+F Sbjct: 534 KLMQ------AEKWDQSLLEELSQTMVDASICGLGQAAPNPIRLTMKHF 576 >gi|73538415|ref|YP_298782.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72121752|gb|AAZ63938.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 414 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/402 (35%), Positives = 215/402 (53%), Gaps = 7/402 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-D 75 G L ++RG + + K L D I+ E++ + LRG GGAGF T KW + + D Sbjct: 16 GADLQAWLARGGGEGLAKALSN-PDAILAEIEQADLRGMGGAGFPTHRKWRPVAAAAAVD 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A A+ +YV E Sbjct: 75 K--YIICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAAATRANHVVLYVNPHQPLSLEM 132 Query: 136 LQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + AV + L +L G + + V +G YI GEETA++ S+EG PR KPP Sbjct: 133 TRQAVQQWQTHAQLAELERLLGGPLTLRVVPSSGLYIGGEETAVIASVEGTFPFPRRKPP 192 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +PA+ G++G PT VNN E++A VP ILR GA WY G GTKL+S+SG V P Sbjct: 193 YPADSGVHGAPTIVNNTETLAHVPGILRHGAQWYRALGVAQAAGTKLYSLSGDVLRPGLY 252 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M + + LI + GG+ G + AV GG S L + A +D+D +++ S Sbjct: 253 ELPMGTSLETLIFEFGGGMLQGKE-FKAVFTGGPSNTLLTKRDLDVA-LDFDSVRKRRSR 310 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ + I++ + F+ SCGQC PC+ GT +MR++ R+ G + + Sbjct: 311 LGTGAMIVVSEGSSIVRKVAEYVSFFAQGSCGQCPPCKGGTFQLMRLLNRIDTGRGVRAD 370 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ L + + + G C L D A + + FR E ++ Sbjct: 371 LEALENLCRILPGSGRCGLIDGAVTVVDSSLHQFRDEYESQL 412 >gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] Length = 562 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 133/349 (38%), Positives = 198/349 (56%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ ++ P YL VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 228 FPSGKKWGFV--RANEGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 285 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +FIY+R E+ E L+ + +G++ + GY I + GAGAYICGEE+A++ Sbjct: 286 RSFIYMRDEYPAVLEILRREIRALEEAGIV----EAGY---IDLRRGAGAYICGEESAMI 338 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G+PR +PPF A VG++G PT V+NVE++ + I R G + + +G Sbjct: 339 ESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNVETLYWIAKINREGPECLNAVEKNGRKGL 398 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P T ++IE G + G A PGG S LPA M Sbjct: 399 RSYSVSGRVQNPGVHLLPAGSTILDVIEAAGGMLEGHL--FKAYQPGGPSSGLLPA-HMN 455 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+ GS +G+AAV+V+ A + F++ ESCGQCTPCR G + Sbjct: 456 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAV 515 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A+K + LL E+S+ + +IC LG AA PI+ +K+F Sbjct: 516 KLMQ------AEKWDQSLLEELSQTMVDASICGLGQAAPNPIRLTMKHF 558 >gi|118579913|ref|YP_901163.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118502623|gb|ABK99105.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] Length = 570 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 144/406 (35%), Positives = 230/406 (56%), Gaps = 9/406 (2%) Query: 18 KSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +SL++ ++ G + K LE + I EV ASGLRGRGG GF TG KW + ++ Sbjct: 146 ESLNEYIATGGYGGAIKAFLEMTPEEICREVIASGLRGRGGGGFPTGRKWE-IARMQPAE 204 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N DE +PG +R +M PH +IEG +IA+ AIG+ ++YVR E+ + + Sbjct: 205 KKYVICNGDEGDPGAFMNRSVMEGNPHAVIEGLMIAARAIGSDEVYVYVRAEYPLAVKRM 264 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV++ A+G+LG+N G + + AGA++CGEETA+L S+EG +G P KPPF Sbjct: 265 NMAVEDAEAAGILGNNIFGTGKRMKCTILPSAGAFVCGEETAMLASIEGLRGTPVPKPPF 324 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL G PT +NNVE++A +P IL GA + G + GTK F+++GHV +E Sbjct: 325 PAQCGLRGKPTIINNVETLAQIPRILLAGAQSFKKMGTPASPGTKTFALTGHVVNTGLIE 384 Query: 256 ESMSITFDELIEKHCGGIRGG----WDNLL-AVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 T E++ GG+ D + AV GG S CLP ++ +D+D L Sbjct: 385 VPFGTTLREIVFSIGGGVTTDEGTPTDGMFKAVQVGGPSGGCLPP-ELLDMPLDFDSLLS 443 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ +G+ ++VM++ T ++ F + ESCG+C CREGT ++ +++ +++G A Sbjct: 444 AGAMVGSGGLVVMNQQTCMVSVARFFMEFTQRESCGKCVLCREGTRQLLVLLDDVIEGRA 503 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +D++ ++K+I+ ++C LG A + +K FR E + Sbjct: 504 TLQTLDIMELLAKSIKLGSLCGLGKTAPNAVLSTLKYFRAEFESHV 549 >gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] Length = 582 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 194/349 (55%), Gaps = 17/349 (4%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KWS + + P + VNADE EPGT KDR + + H ++EG +IA++ +GA Sbjct: 246 FPTARKWSLVRQAPG--PRLMAVNADEGEPGTFKDRWYLERDVHRMLEGMLIAAWVVGAD 303 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L ++ A+GL +I + GAGAYICGEE+A++ Sbjct: 304 AVYIYLRDEYPEIHAILIEEIEALTAAGLASHT-------EIHLRRGAGAYICGEESAMI 356 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PP+ A GL+ PT VNNVE++ V I+ +G W++ G+ + G Sbjct: 357 ESIEGKRGLPRHRPPYVAQRGLFDRPTLVNNVETLWWVRDIVEKGGEWFASLGKPGHPGL 416 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P + +T ELIE+HCGG+ G +PGG+S LPA M Sbjct: 417 RSYSVSGRVRNPGVKVVAAGVTARELIEEHCGGMLDG-HAFKGYLPGGASGGILPA-SMA 474 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+ AV+++ D+ L F++ ESCGQCTPCR GT Sbjct: 475 DIPLDFGQLEKHGCFVGSHAVVILSDRDDMKDVALNLMRFFEDESCGQCTPCRAGTEKAA 534 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +M + + LL E++ + +IC LG AA PI ++K F Sbjct: 535 TLMA------SGHWDQPLLEELTGVMRDASICGLGQAAGNPILSVMKFF 577 >gi|225164244|ref|ZP_03726517.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224801149|gb|EEG19472.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 331 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 120/252 (47%), Positives = 160/252 (63%), Gaps = 4/252 (1%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + G ++ + + + + + + +EVK SG+RGRGGAGF G+KW + + S +P YL+VN Sbjct: 41 LRNGGYEILKRAVARKPEDLRDEVKKSGIRGRGGAGFPCGVKWGLVDRK-SGKPIYLIVN 99 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGT KDR I+ +PH LIEG +I+ FA A+IY+RGE L+ A+ E Sbjct: 100 ADESEPGTFKDRYIIHQDPHQLIEGTIISCFANDVKQAYIYIRGEMPEGARILERAIAEA 159 Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201 A +G N GY +I VH GAGAYICGEET L+ESLEGK+ PR+KPP FPA +GL Sbjct: 160 RAKNFVGPNILGTGYSCEIYVHRGAGAYICGEETGLIESLEGKRANPRIKPPYFPAVLGL 219 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSI 260 Y CPT VNNVE++ V + G Y+ G NN GT++F +SGHV P E E+ I Sbjct: 220 YQCPTIVNNVETLCHVKHAIDIGGDNYAKIGTPNNTGTRIFCVSGHVQRPGYYEFEAGKI 279 Query: 261 TFDELIEKHCGG 272 T +L+ CGG Sbjct: 280 TMGQLLNDVCGG 291 >gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] Length = 576 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 137/350 (39%), Positives = 199/350 (56%), Gaps = 20/350 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ ++ P YL VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 242 FPSGTKWGFV--RANEGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAE 299 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 AFIY+R E+ E L+ + +G++ + GY I + GAGAYICGEE+A++ Sbjct: 300 KAFIYMRDEYPAVLEILRREIAALEEAGIV----EAGY---IDLRRGAGAYICGEESAMI 352 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G+PR +PPF A VG++G PT V+NVE++ V + R G + + +G Sbjct: 353 ESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGL 412 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P T ++IE CGG+ G A PGG S LPA M Sbjct: 413 RSYSVSGRVKNPGVHLLPAGSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMH 469 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+ G+ +G+AAV+V+ A + F++ ESCGQCTPCR G Sbjct: 470 DIPLDFDTLQPHGTFIGSAAVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGC---- 525 Query: 360 RVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 E+ VK + +K+ + LL E+S + +IC LG AA PI+ IK+F Sbjct: 526 ---EKAVKLMGEKKWDQGLLEELSAAMVDTSICGLGQAAPNPIRLTIKHF 572 >gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] Length = 561 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 142/393 (36%), Positives = 216/393 (54%), Gaps = 21/393 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++L+ + G + ++ + +G DW + ++V ASGLRG GGAGF +G KW F+ Sbjct: 184 QTLASYCADGGYAVLEHLRAQG-DWQAVQDKVLASGLRGLGGAGFPSGRKWGFVRAHAG- 241 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ Sbjct: 242 -PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLAI 300 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L+ + +G++ G+ I + GAGAYICGEE+A++ES+EGK+G PR +PPF Sbjct: 301 LRREIAALEQAGIVAP----GF---IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPPF 353 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VGL+G PT V+NVE++ V + R G S + +G + +S+SG V P Sbjct: 354 VAEVGLFGRPTLVHNVETLLWVARVCREGPDILSSVEKNGRKGLRSYSVSGRVAQPGMYV 413 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ++I G G A PGG S LPA M +D+D L+ + + Sbjct: 414 LPAGSTITDIIAAAGGMAAG--HVFKAYQPGGPSSGLLPA-TMADVPLDFDTLQPHDTFI 470 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V+ + A + F++ ESCGQCTPCR G +++M+ A + + Sbjct: 471 GSAAVVVLSQQDRARDAALNMLRFFEDESCGQCTPCRVGCQKAVQLMQ------APEWDR 524 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 LL ++ + +IC LG AA PI+ ++++F Sbjct: 525 ALLGDLCTAMADASICGLGQAAPNPIRLVMRHF 557 >gi|91762193|ref|ZP_01264158.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717995|gb|EAS84645.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 552 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/409 (32%), Positives = 211/409 (51%), Gaps = 12/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSR--GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q++ F+ Y + D +S + + K + + I + S L GRGGAGF T Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFKEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K S++ Y++ NADE + G DR ++ +P ++ G VI + IG+ Sbjct: 199 GMKWDFCRKAPSEK-KYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 +Y+RGE+ + E++ A++ +GLLG N +K +D++I + G GAYICGEETAL+ Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICI--GQGAYICGEETALI 315 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++ + ++PPFP GLY PT VNNVE++A IL GA +S G + + GT Sbjct: 316 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGT 375 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL N P E M +++ GG + + + A+ GG +P ++ Sbjct: 376 KLVCFDSFFNNPGVYEVEMGTPMKKVLNDIGGGFK---EPIKALQIGGPLGGVIPITEIE 432 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ G LG A+++ + + +I+ I L F ESCG+C P R G+ + Sbjct: 433 KLNLDFQEFTAAGFMLGHASIVSIPKDFPMIEYIHHLFEFSAEESCGKCFPGRLGS-YRG 491 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + M K K + LL E+ ++ +CAL A PI ++K F Sbjct: 492 KEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 540 >gi|71062496|gb|AAZ21499.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1062] Length = 509 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/409 (32%), Positives = 211/409 (51%), Gaps = 12/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDN--VDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q++ F+ Y + D +S N + K + + I + S L GRGGAGF T Sbjct: 96 QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 155 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K S++ Y++ NADE + G DR ++ +P ++ G VI + IG+ Sbjct: 156 GMKWDFCRKAPSEK-KYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 214 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 +Y+RGE+ + E++ A++ +GLLG N +K +D++I + G GAYICGEETAL+ Sbjct: 215 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICI--GQGAYICGEETALI 272 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++ + ++PPFP GLY PT VNNVE++A IL GA +S G + + GT Sbjct: 273 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGT 332 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL N P E M +++ GG + + + A+ GG +P ++ Sbjct: 333 KLVCFDSFFNNPGVYEVEMGTPMKKVLNDIGGGFK---EPIKALQIGGPLGGVIPITEIE 389 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ G LG A+++ + + +++ I L F ESCG+C P R G+ + Sbjct: 390 KLNLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGS-YRG 448 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + M K K + LL E+ ++ +CAL A PI ++K F Sbjct: 449 KEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 497 >gi|304570556|ref|YP_266102.2| NAD-dependent formate dehydrogenase subunit beta [Candidatus Pelagibacter ubique HTCC1062] Length = 552 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/409 (32%), Positives = 211/409 (51%), Gaps = 12/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDN--VDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q++ F+ Y + D +S N + K + + I + S L GRGGAGF T Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K S++ Y++ NADE + G DR ++ +P ++ G VI + IG+ Sbjct: 199 GMKWDFCRKAPSEK-KYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 +Y+RGE+ + E++ A++ +GLLG N +K +D++I + G GAYICGEETAL+ Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICI--GQGAYICGEETALI 315 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++ + ++PPFP GLY PT VNNVE++A IL GA +S G + + GT Sbjct: 316 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGT 375 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL N P E M +++ GG + + + A+ GG +P ++ Sbjct: 376 KLVCFDSFFNNPGVYEVEMGTPMKKVLNDIGGGFK---EPIKALQIGGPLGGVIPITEIE 432 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ G LG A+++ + + +++ I L F ESCG+C P R G+ + Sbjct: 433 KLNLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGS-YRG 491 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + M K K + LL E+ ++ +CAL A PI ++K F Sbjct: 492 KEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 540 >gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mesorhizobium sp. BNC1] gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chelativorans sp. BNC1] Length = 557 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 198/350 (56%), Gaps = 17/350 (4%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G KW + P + +N DE EPGT KDR + +PH EG +IA++A+ A Sbjct: 220 FPAGKKWQIVRSYPG--PRLMSINGDEGEPGTFKDRIYLERDPHRTFEGALIAAYAVEAE 277 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 + Y+R E+ L+A + A+G++ I + GAGAYICGEE+A+L Sbjct: 278 RIYFYMRDEYPAVLAILRAEIAALEAAGIVAPGF-------IELRRGAGAYICGEESAML 330 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG++G PR +PP+ A VGL+G PT +NVE++ + I+ +G W++G G+ + G Sbjct: 331 ESIEGRRGMPRHRPPYIAEVGLFGRPTLNHNVETLWWIRDIVEKGPDWFAGLGKPGHPGV 390 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T LIE +CGG+ G + A +PGG+S LPA + Sbjct: 391 RSWSVSGRVKEPGVKLAPAGVTARGLIEDYCGGMADGHE-FKAYLPGGASGGILPAA-LG 448 Query: 300 GAIMDYDG-LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+ G L + GS +G+ AV+V ++ ++ L F+KHESCG+CTPCREGT M Sbjct: 449 DIPLDFGGELAKQGSFVGSHAVVVFSQADNLKDVTLNLMNFFKHESCGKCTPCREGTEKM 508 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + +++ G ++ I L V ++ +IC LG AA P+ L+ +F Sbjct: 509 VTLLKE--PGPLRETAIRDLETVMRD---SSICGLGQAAPNPVNHLLTHF 553 >gi|295699179|ref|YP_003607072.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] gi|295438392|gb|ADG17561.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] Length = 414 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 147/394 (37%), Positives = 212/394 (53%), Gaps = 5/394 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G L +RG + + K L+ + II E+ + LRG GGAGF KW+ + D Sbjct: 16 GADLDAWFARGGGEGLAKALDD-PEAIIAELAQADLRGMGGAGFPAHRKWAPV-AAAPDG 73 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N +E EPGT KDR ++ H PH +IEG +IA+ A A+ +YV + Sbjct: 74 DKYVVCNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAVATRANHVVLYVNPHQTSSLAAT 133 Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV++ + + +G + + V +G YI GEETA++ S+EG PR KPPF Sbjct: 134 REAVEQWSGHPQFAAVERWIGAPLSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G++G PT VNNVE++A VP ILR GA WY G N GTKL+S+SG V P E Sbjct: 194 PAEQGVHGAPTIVNNVETLAHVPGILRHGAQWYRELGVGNAAGTKLYSLSGDVLRPGLYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + + L+ +H GG+ G AV GG S L + A +D+D +++ S L Sbjct: 254 LPMGTSLETLVFQHGGGMLQG-KEFKAVFTGGPSNTLLTKRDLDVA-LDFDSVRQRRSRL 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IV+ T I++ + F+ SCGQC PC+ GT MMR++ RL G + ++ Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 D L + + + G C L D A ++ I FR Sbjct: 372 DALENLCRVLPGSGRCGLIDGAVTVVESSIDQFR 405 >gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196] gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Nitrosospira multiformis ATCC 25196] Length = 598 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/390 (33%), Positives = 206/390 (52%), Gaps = 22/390 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESE 88 + L +G D + E+K S LRGRGGAG++T KW+ C D Y+V NADE E Sbjct: 194 IRATLMRGADATLGELKLSRLRGRGGAGYATADKWT----ACRDSEGTARYIVCNADEGE 249 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++ + EG + + +G+ F+Y+RGE+ + L+ + + L Sbjct: 250 PGTFKDRVLLNRYADMVFEGMTVGARLLGSTKGFLYLRGEYQYLLKKLEEVLARRCEARL 309 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 LG++ + G+D DI +H GAGAYICGEE+AL+ESLEG++G+PR +PP+PA G PT Sbjct: 310 LGTDILGEPGFDFDIEIHLGAGAYICGEESALIESLEGRRGKPRNRPPYPAQHGYLDQPT 369 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVE+ A I G W+ G + G+K+ SI+G P E ++ E++ Sbjct: 370 VVNNVETFACSAMIAVHGGKWFGETGTWESSGSKILSIAGDCTLPGIYEYPFGVSVREIL 429 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 + C + AV GG S + + +I +D L G A + R Sbjct: 430 QD-CAA-----EEAYAVQVGGPSGILVSWKEFERSI-SFDDLPTAG------AFTIFGRG 476 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 DI++A+ + F+ HESCG CTPCR GT ++++++ G +++ L + + Sbjct: 477 RDILEAVRNYAHFFAHESCGFCTPCRVGTQLQKKLVDKIADGHGTASDLEELKHLGHLMR 536 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + C LG A P+ +++ F E+++ Sbjct: 537 TMSHCGLGHTAPNPVLDMLEKFPGAYEQKL 566 >gi|320450369|ref|YP_004202465.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01] gi|320150538|gb|ADW21916.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01] Length = 490 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 203/369 (55%), Gaps = 40/369 (10%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ V+ +GL GRGGA F +K + + + P YLVVNADESEPG KDR ++ H Sbjct: 154 EAILEAVEEAGLLGRGGAAFPAHIKMRAVAR--GEPPRYLVVNADESEPGNFKDRYLLEH 211 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 P ++EG ++A+ A+GA F+YVR EF L+ A+ + +GLL V Sbjct: 212 HPFLVLEGTLLAALAVGASQVFLYVRDEFEAAILGLEKAIHQLEEAGLL--------PVP 263 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 V G YICGEETALLES+EGK+ +PRLKPPFP GL+G PT V NVE++A +P I Sbjct: 264 TQVFTSGGLYICGEETALLESMEGKRAEPRLKPPFPVERGLWGRPTLVQNVETLANLPLI 323 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 LR G G RE KLFSI+G V P E + + ++ + K G G L Sbjct: 324 LREG----PGTWREKE--PKLFSITGDVARPGLYELPLGTSLEDALRKAEGEPEG----L 373 Query: 281 LAVIPGGSSVPCLPAGQMR---GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 AV+ GG+ AG + Y G +G+G A++ + D+ + + L+ Sbjct: 374 KAVLLGGA------AGVFTRDFAFPLRYKGRLPLGAG----AIVAFGKEVDLWEVLLGLA 423 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F++ ESCG+C PC GT + ++ R ++R DL++ + + ++G ++C LG +A Sbjct: 424 EFFREESCGKCFPCPLGTAVQVEMVRR------RERNRDLVHHLGQALKG-SLCGLGQSA 476 Query: 398 AWPIQGLIK 406 W Q L++ Sbjct: 477 YWAYQSLLE 485 >gi|169334685|ref|ZP_02861878.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM 17244] gi|169257423|gb|EDS71389.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM 17244] Length = 416 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 131/405 (32%), Positives = 217/405 (53%), Gaps = 8/405 (1%) Query: 7 RIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 + T YG G ++ + + RG + + K + +G + + +V SGL+GRGGA + TG K Sbjct: 5 KYITKDYGTYDGFNIDEYIKRGGFKGLKKSILQGYEKTVKDVSDSGLQGRGGANYPTGRK 64 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 + + + Y++ NADE EPGT KD+ ++++ + +IEG +I++F GA+ +IYV Sbjct: 65 LTQAREAKGNGDRYILCNADEGEPGTFKDKYLLQNGIYKVIEGIIISAFCAGANKGYIYV 124 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 R E+ + ++ A+ + Y G LG + G+D D+ + G G+Y+CGE A+ ES+EG Sbjct: 125 REEYTFMHKDIEFAIKQVYDKGFLGEDILSSGFDFDLSLFSGGGSYVCGEGFAMCESIEG 184 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K G+PR KPP+ GL+ PT V NVE+++V+ T+++ G +G E+ GTK+ + Sbjct: 185 KSGRPRSKPPYVKECGLHNKPTLVINVETVSVIATMMQNGFKTVLKYGVEDCPGTKMVCV 244 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V +P E T +I+ G G + + GG+S +P ++ Sbjct: 245 SGKVKHPGVYEVEFGTTVQNIIKIAGGIKGGKKAKFVQI--GGASGVIVPYEKLN-IPYT 301 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 Y G+K++ +G+ A++V D +I + + F+ HE CG+C PCREG + ++M+R Sbjct: 302 YSGMKKVKGNIGSGAIVVADEDDSVIDYLSVVEDFFFHECCGKCVPCREGNRQLKKIMDR 361 Query: 365 LVKGIAQKREIDLL-YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 I Q DL Y N ++C G A P NF Sbjct: 362 F--KIKQGTLTDLKNYVRIVNALDASLCGSGKAQIIPFISAYTNF 404 >gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72] gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp. BH72] Length = 571 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 145/396 (36%), Positives = 209/396 (52%), Gaps = 31/396 (7%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G L +S+ RG D + ++ + + LRG GGAGF KW + + Sbjct: 186 GYRLYESVVRGEHDA---------EEVLGVLDTAILRGLGGAGFPAARKWRTV--MAQPA 234 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + VN DE EPGT KDR + +PH +EG +IA+ +G +IY+R E+ R L Sbjct: 235 PRNMAVNIDEGEPGTFKDRHYLGRDPHRFLEGMLIAARVVGISAIWIYIRDEYPALRRML 294 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A +D+ A+ +L GAGAYICGEE+A++ES+EGK+G PRL+PP+ Sbjct: 295 LAELDKLRAAWPDLPPVEL--------RRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 346 Query: 197 ANVGLYGCPTTVNNVESI----AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 A VGL+G PT V+N E++ +V L +GA W G GR RG + FS+SG V P Sbjct: 347 AEVGLFGRPTLVHNPETLWWVRDIVTAGLVQGAQWLEGRGRNGRRGLRSFSVSGRVAKPG 406 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 V IT +L+++HCGG+ G + L PGG+S LPA + +D+D L G Sbjct: 407 VVVTDAGITLRQLVDEHCGGMLPGHE-LYGYFPGGASGGILPA-SLADVPLDFDTLAPYG 464 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G+AA++V + F+ HESCGQCTPCR GT +M A Sbjct: 465 CFIGSAAIVVFSQHDQARVLAENAMHFFAHESCGQCTPCRVGTAKAADLMA------APT 518 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + LL E+ + +IC LG AA P++ +++ F Sbjct: 519 WDAGLLDELGSAMMDASICGLGQAAPNPMRSVLRYF 554 >gi|134098995|ref|YP_001104656.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] gi|133911618|emb|CAM01731.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] Length = 559 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 140/405 (34%), Positives = 206/405 (50%), Gaps = 16/405 (3%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGM 64 R L GL G + G W + + G ++ EV A+GLRGRGGA + Sbjct: 160 SRQPVTLAGLSGDA-------GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAA 212 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW + + P Y+VVN DE +PG+ DR +M +PH ++EG +A FA GAH F++ Sbjct: 213 KWRAVAR--GPAPRYVVVNGDEGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVF 270 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183 VR E+ + ++ AV E ++G G N G+D++I V GAG+Y+ GEETALL +L+ Sbjct: 271 VRSEYPIAVDRMRVAVAEARSAGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQ 330 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G +G R +PP+P ++G G PT VNNVE+IA VP ++R G Y+ G GTKL S Sbjct: 331 GLRGAVRPRPPYPTSLGFEGHPTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVS 390 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +S P E +++E GG+R D L + G + A + Sbjct: 391 LSERFARPAVYEVEFGTPLRDIVEVLGGGLRD--DRELRAVQVGGPLGGFLAPDELDLPL 448 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D L + G LG +++ +DRS + + L F ESCG CTPCR G+ + + Sbjct: 449 LADALADAGVALGHGSLVAIDRSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAY 508 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 RL + E L EV ++CA G A ++ L++ F Sbjct: 509 RLAYTDTAETEHQHLLEVMGT---GSLCAFGRGVAGSVRSLLRVF 550 >gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] Length = 566 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 150/391 (38%), Positives = 219/391 (56%), Gaps = 31/391 (7%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +L D + G W+ V +VK +GLRG GGAGF +G KW F+ ++ Sbjct: 202 TLKDLRANGDWEAVQA-----------KVKEAGLRGLGGAGFPSGTKWGFV--RANEGAR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL VN DE EPGT KDR + PH +EG ++A++A+ A AFIY+R E+ + L Sbjct: 249 YLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLKILAT 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + A+G++ + GY I + GAGAYICGEE+A++ES+EGK+G+PR +PPF A Sbjct: 309 EIKALEAAGIV----EEGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQ 361 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VG++G PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 362 VGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPA 421 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 T ++IE CGG+ G A PGG S LPA M +D+D L+ G+ +G+A Sbjct: 422 GSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMNDVPLDFDTLQPHGTFIGSA 478 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDL 377 AV+V+ A + F++ ESCGQCTPCR G E+ VK +++K+ + L Sbjct: 479 AVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWDQGL 531 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 L E+S + +IC LG AA PI+ +K+F Sbjct: 532 LEELSTAMVDASICGLGQAAPNPIRLTMKHF 562 >gi|291006765|ref|ZP_06564738.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] Length = 560 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 140/405 (34%), Positives = 206/405 (50%), Gaps = 16/405 (3%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGM 64 R L GL G + G W + + G ++ EV A+GLRGRGGA + Sbjct: 161 SRQPVTLAGLSGDA-------GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAA 213 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW + + P Y+VVN DE +PG+ DR +M +PH ++EG +A FA GAH F++ Sbjct: 214 KWRAVAR--GPAPRYVVVNGDEGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVF 271 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183 VR E+ + ++ AV E ++G G N G+D++I V GAG+Y+ GEETALL +L+ Sbjct: 272 VRSEYPIAVDRMRVAVAEARSAGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQ 331 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G +G R +PP+P ++G G PT VNNVE+IA VP ++R G Y+ G GTKL S Sbjct: 332 GLRGAVRPRPPYPTSLGFEGHPTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVS 391 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +S P E +++E GG+R D L + G + A + Sbjct: 392 LSERFARPAVYEVEFGTPLRDIVEVLGGGLRD--DRELRAVQVGGPLGGFLAPDELDLPL 449 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D L + G LG +++ +DRS + + L F ESCG CTPCR G+ + + Sbjct: 450 LADALADAGVALGHGSLVAIDRSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAY 509 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 RL + E L EV ++CA G A ++ L++ F Sbjct: 510 RLAYTDTAETEHQHLLEVMGT---GSLCAFGRGVAGSVRSLLRVF 551 >gi|218660421|ref|ZP_03516351.1| NADH dehydrogenase (quinone) [Rhizobium etli IE4771] Length = 303 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 178/296 (60%), Gaps = 17/296 (5%) Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 EGCVIASFA+GA+ A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHG Sbjct: 1 EGCVIASFAMGANAAYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHG 60 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 AGAY+CGEETALL SLEG +G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+ Sbjct: 61 AGAYVCGEETALLNSLEGTRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 120 Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 +Y FG +RGT I+G++ Y E + ++ +++++ GG G + AV G Sbjct: 121 FYRDFGMGRSRGTIPLQIAGNIRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVG 179 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK-AIWRLSVFYKHESC 345 G P + DY+ +G A ++V D + D++K A + + + + E Sbjct: 180 GPLGAYFPRA-LFDTPFDYESFAARDGLIGHAGIVVFDDTADMLKQARFAMGILRRRE-- 236 Query: 346 GQCTPCREGTGWMMRVMERLVKG-------IAQKREIDLLYEVSKNIEGRTICALG 394 R+ R+ R G +++R LL ++ N E ++CALG Sbjct: 237 -----LRQVHALSHRLDARRRDGRQDRPWASSRRRTGALLADLCNNDEIGSLCALG 287 >gi|312795433|ref|YP_004028355.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) [Burkholderia rhizoxinica HKI 454] gi|312167208|emb|CBW74211.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) (EC 1.2.1.2) [Burkholderia rhizoxinica HKI 454] Length = 540 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 145/413 (35%), Positives = 218/413 (52%), Gaps = 9/413 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L+ Q R+ F+ + + S+ D ++ G + + L+ + +GLRGRGGA F Sbjct: 108 LSKQQRLTFSRIGLIDPLSIDDYVAHGGLQGLHRALQMAPAAACQLLIDAGLRGRGGAAF 167 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + +D+ Y+V NADE + GT DR M +P LIEG +IA + GA Sbjct: 168 PAGIKWRTVLQAQADQ-KYVVCNADEGDSGTFSDRLSMECDPFGLIEGMIIAGVSTGATQ 226 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ L AA+ A+G LG + G D+ V GAGAY+CGEETALL Sbjct: 227 GYLYVRSEYPLAIARLNAAIARARAAGWLGPDVLGSGRAFDLFVAKGAGAYVCGEETALL 286 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA G G PT +NNV ++A VP I RG ++Y FG +RGT Sbjct: 287 ESLEGKRGIVRAKPPLPALAGYRGKPTVINNVITLASVPIIFARGDAFYRDFGMGRSRGT 346 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ + GG G A+ GG LP Q Sbjct: 347 LPFQLAGNVQRGGLVEVAFGVTLRELVFEFGGGTASGRPA-RAIQVGGPLGTYLPPSQWD 405 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G ++V D + ++ + F ESCG+CTPCR G+ Sbjct: 406 -VPLDYEAYTAIGAVVGHGGIVVHDDTANLAELARYAMHFCALESCGKCTPCRIGSTRGA 464 Query: 360 RVMERL----VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V+++L A+ + LL E+ + ++CA+G +P+ + +F Sbjct: 465 EVIDKLRAPEQDARARTHHVTLLRELCDTMLHGSLCAMGGMTPYPVLSALDHF 517 >gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] Length = 570 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 133/349 (38%), Positives = 196/349 (56%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ P Y+ VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 236 FPSGKKWGFVRDNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAE 293 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 F+Y+R E+ + L+ + A+G++ + GY I + GAGAYICGEE+A++ Sbjct: 294 KVFLYMRDEYPQVLALLRTEIAALEAAGIVPA----GY---IDLRRGAGAYICGEESAMI 346 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PP+ A VG++G PT V+NVE++ V I R G + + +G Sbjct: 347 ESIEGKRGLPRHRPPYVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGL 406 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P E T ++IE GG+ G A PGG S LPA M Sbjct: 407 RSYSVSGRVAKPGMYELPAGSTITDVIEA-AGGMANG-HRFKAYQPGGPSSGLLPAA-MD 463 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+ GS +G+AAV+V+ A + F++ ESCGQCTPCR G + Sbjct: 464 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 523 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A + + LL E+S + +IC LG AA PI+ +IK+F Sbjct: 524 KLMQ------ADRWDKPLLEELSTAMVDASICGLGQAAPNPIRLVIKHF 566 >gi|254456591|ref|ZP_05070020.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083593|gb|EDZ61019.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 551 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/409 (32%), Positives = 209/409 (51%), Gaps = 12/409 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q++ F+ + + D S D ++K L+ + II + S L GRGGAGF T Sbjct: 138 QEKFFSKSFATTSFLMDDKFSSTDQFKDQLNKFLKVDKKEIIKSLLDSNLTGRGGAGFPT 197 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K D+ Y++ NADE + G DR ++ +P +I G VI IG+ Sbjct: 198 GMKWDFCSKAKGDK-KYVLCNADEGDSGAFSDRYLLEDQPLKVIFGMVICGLVIGSDEGV 256 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179 +Y+RGE+ + E++ ++E LLG N + +D+ I + G GAYICGEETAL+ Sbjct: 257 LYIRGEYPKSIEAINGCINELKKLNLLGENILGTDFSFDLGICI--GQGAYICGEETALI 314 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++ + ++PPFP GLY PT VNNVE++A IL G+ +S G + + GT Sbjct: 315 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGSEKFSAIGNKKSAGT 374 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL + N P E M + ++ E+ GG + + + A GG +P ++ Sbjct: 375 KLVCLDSFFNNPGVYEIDMGTSMKKIFEEIGGGYK---EAVKAFQIGGPLGGVVPLAEID 431 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ G LG A+V+ + + + + I L F ESCG+C P R G+ Sbjct: 432 NLNLDFQEFTAKGFMLGHASVVSIPKDFSMSEYIHHLFEFSAEESCGKCFPGRLGSYRGK 491 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + ++ K A K + LL E+ ++ +CAL A PI ++K F Sbjct: 492 EMFDQAKKKTA-KIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 539 >gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] Length = 568 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/352 (38%), Positives = 194/352 (55%), Gaps = 24/352 (6%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ P YL VN DE EPGT KDR + +PH +EG +IA++A+ A Sbjct: 234 FPSGRKWGFVRAEAG--PRYLAVNGDEGEPGTFKDRYYLERQPHLFLEGMLIAAWAVAAE 291 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ E L + + A+GL+ + GY + + GAGAYICGEE+A++ Sbjct: 292 RCFIYMRDEYPAVLEILASEIAALEAAGLIAA----GY---VELRRGAGAYICGEESAMI 344 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG +G PR +PPF A VG++ PT VNNVE++ V ILR G + +G Sbjct: 345 ESIEGNRGLPRHRPPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNSVEHNGRKGL 404 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P T ++I G + G + A PGG S LPA M Sbjct: 405 RSYSVSGRVKNPGVHLLPAGSTITDIIAAAGGMLEG--HSFKAYQPGGPSSGLLPA-SMN 461 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +D+D L+ GS +G+AAV+V+ DR+ D + R F++ ESCGQCTPCR G Sbjct: 462 DIPLDFDTLQPHGSFIGSAAVVVLSDHDRARDAALNMLR---FFEDESCGQCTPCRVGCE 518 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++M+ A + LL E+ + +IC LG AA PI+ +K+F Sbjct: 519 KAVKLMQ------ADTWDQPLLAELCTAMSDASICGLGQAAPNPIRLTMKHF 564 >gi|326386802|ref|ZP_08208422.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM 19370] gi|326208721|gb|EGD59518.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM 19370] Length = 503 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 150/421 (35%), Positives = 225/421 (53%), Gaps = 45/421 (10%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 SL+D + G W + ++ +I EV SGLRGRGGAGF G+KW K D P Sbjct: 99 SLADYEATGGWAALRRVRGMTGAEVIAEVMQSGLRGRGGAGFPAGIKW----KTVHDAPG 154 Query: 78 --HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NADE + GT DR +M +P+ LIEG IA+ A+GA +IY R E+ Sbjct: 155 TRKYVVCNADEGDSGTFADRMLMEGDPYQLIEGLAIAAHAVGAGHGYIYTRSEYPHAIAK 214 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L+AA+D + ++ + V GAGAY+CGEET+LL S+EGK+G R KPP Sbjct: 215 LRAAID---------LSREIVAPFVLEVRAGAGAYVCGEETSLLNSIEGKRGIVRAKPPL 265 Query: 196 PANVGLYGCPTTVNNVESIAVVPTIL-RRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 PA GL+GCPT VNNV +IA +P I+ GA+ Y+ G + + GTK ++G++ + Sbjct: 266 PALEGLFGCPTVVNNVLTIAAIPHIMAEGGAAEYAALGVDRSLGTKPIQLAGNIRHGGLY 325 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L+ GG G + AV GG +P Q DY+ + + Sbjct: 326 ETAFGITLRDLVHAIGGGTASG-RPVKAVQVGGPLGAYIPPEQFD-LPFDYEAYARVDAL 383 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERL-------- 365 +G V+V D + D + A+ R ++ F ESCG+CTPCR G+ + V++RL Sbjct: 384 IGHGGVVVFDDTAD-MGALARFAMEFCAAESCGKCTPCRIGSTRGVEVIDRLRTREKVLD 442 Query: 366 -VKGIAQ-----------KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK----NFR 409 V + Q + ++DLL ++ + ++ ++CALG A +P+ ++ +FR Sbjct: 443 PVAALPQMHNAPKHARGREADVDLLKDLCETMKFGSLCALGGFAPYPVLSALRYWPEDFR 502 Query: 410 P 410 P Sbjct: 503 P 503 >gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 621 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/416 (35%), Positives = 223/416 (53%), Gaps = 5/416 (1%) Query: 5 QDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 QDR + + + + L DS+ G + + L + ++ V SGLRGRGG GF TG Sbjct: 133 QDRQVLRHCGHIDPRELRDSVRAGGYRALGLALGMEPEDVVKAVSDSGLRGRGGGGFPTG 192 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + + +++ N DE +PG DR +M +PH+++EG +I + A+GA F+ Sbjct: 193 IKWDSCRRA-KGKHRFVLANGDEGDPGAFMDRSLMEGDPHSVLEGMIIGAHAVGARKGFL 251 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ E L A+ + +GLLG N G D D+ V G GA++CGE +AL+ S+ Sbjct: 252 YVRAEYPLAVEHLNRAIAQAREAGLLGRNILGSGLDFDLEVCRGGGAFVCGESSALMASI 311 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG+ G+PR+K GL+ CPT +NNVE+ A VP ++ +GA Y G + + GTK+F Sbjct: 312 EGRAGEPRVKYIRSTERGLWDCPTVLNNVETWANVPLVIPQGAQAYRTKGTDGSPGTKVF 371 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+ G V + VE M T E+I GG G AV GG S CLP ++ + Sbjct: 372 SLVGKVRHSGLVEVPMGTTLREIIFGL-GGGVLGRGRFKAVQTGGPSGGCLPEDRLDIPV 430 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 D+D L E GS +G+ +IVMD T ++ F ESCG+C PCREG ++ ++ Sbjct: 431 -DFDRLVEEGSMMGSGGMIVMDHRTCMVDVARYFVHFLAEESCGKCVPCREGLQAILDIL 489 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L +G + + L E+ + + +C LG AA P+ ++ F E +Q Sbjct: 490 NDLTQGRGRPGDGRRLEEMGRALSDTALCGLGQTAANPVLSTLRFFPEEYREHEEQ 545 >gi|119944968|ref|YP_942648.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37] gi|119863572|gb|ABM03049.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37] Length = 588 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 201/379 (53%), Gaps = 25/379 (6%) Query: 44 INEVKASGLRGRGGAGFSTGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRH 100 + E+ SGLRG GGAGF T KW K C D Y+V NADE EPGT KDR ++ Sbjct: 201 LAEIDKSGLRGCGGAGFKTAEKW----KSCLLSDDNQRYVVCNADEGEPGTFKDRVLLNS 256 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGY 157 LIEG + ++ IGA FIY+R E+ + L + A+ LLG+ NS+L + Sbjct: 257 YADLLIEGMTLCAYVIGAQKGFIYLRYEYQHLYKKLLETLQRRRAANLLGAHILNSELSF 316 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D++I + GAG+Y+CGEE+ALLESLEG++ PR++PPFP G PT VNNVE+ Sbjct: 317 DIEIFM--GAGSYVCGEESALLESLEGRRAIPRIRPPFPVTHGYLDKPTVVNNVETFCYA 374 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 I+ +GA +S G G K+ SISG V E + + ++ CG Sbjct: 375 ALIIEKGAENFSAQGLAGFTGCKILSISGDVEKTGIYEIPLGLPVKNVLNL-CGA----- 428 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 ++ AV GG S + + ++ +D L GS +V ++S DI++ + Sbjct: 429 QSVQAVQVGGPSGTLITPAEF-SRVISFDDLHTGGS------FMVFNQSRDILENALNFT 481 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F+ ESCG CTPCR GT + + +++ G + ++D + +++ + G + C LG A Sbjct: 482 HFFMQESCGFCTPCRVGTKLIYDLADKVATGQGARLDLDSIKQLNHVMNGMSHCGLGQRA 541 Query: 398 AWPIQGLIKNFRPLIEERI 416 A P+ ++ F +R+ Sbjct: 542 AEPLLETLEKFPEYFVKRM 560 >gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] Length = 569 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 198/349 (56%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ P Y+ VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 235 FPSGKKWGFVRGNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHHFLEGMLIAAWAVEAD 292 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 F+Y+R E+ + L+ + A+G++ + GY I + GAGAYICGEE+A++ Sbjct: 293 KVFLYMRDEYPQVLALLRTEIAALEAAGIV----EPGY---IDLRRGAGAYICGEESAMI 345 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PP+ A VG++G PT V+NVE++ V + R G + + + +G Sbjct: 346 ESIEGKRGMPRHRPPYVAQVGIFGRPTLVHNVETLHWVARVCREGPEVLNSTVKNDRKGL 405 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P T ++I+ GG+ G A PGG S LPA M Sbjct: 406 RSYSVSGRVANPGMYLLPAGSTITDIIDA-AGGMADG-HVFKAYQPGGPSSGLLPA-SMA 462 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+ GS +G+AAV+V+ A + F++ ESCGQCTPCR G + Sbjct: 463 DVVMDFDTLQPHGSFIGSAAVVVLSEHDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 522 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A + + LL E+S+ + +IC LG AA PI+ ++K+F Sbjct: 523 KLMQ------ADRWDKPLLEELSQAMVDASICGLGQAAPNPIRLVMKHF 565 >gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] Length = 585 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 189/354 (53%), Gaps = 24/354 (6%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F KW + P ++ VN DE EPGT KDR + +PH IEG +IA+ +G Sbjct: 236 FPAARKWRTV--AAQPAPRFMAVNIDEGEPGTFKDRHYLETDPHRFIEGMLIAAHVVGID 293 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII-VHHGAGAYICGEETAL 178 +IY+R E+ R L +D A+ DV I + GAGAY+CGEE+A+ Sbjct: 294 GIWIYIRDEYPALRRLLAEELDRVRAAW---------PDVPSIEIRRGAGAYVCGEESAM 344 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI----AVVPTILRRGASWYSGFGRE 234 +ES+EGK+G PRL+PP+ A VGL+G PT +N+E++ +V L ++ GR Sbjct: 345 IESIEGKRGMPRLRPPYVAEVGLFGRPTLEHNLETLWWVRDIVAPALAGEPGPFASRGRN 404 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 +G + FS+SG V P V IT EL+E+HCGG+ G + L PGG+S LP Sbjct: 405 GRKGLRSFSVSGRVAKPGVVVTDAGITLRELVEEHCGGMLPGHE-LYGYFPGGASGGMLP 463 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 A ++ +D+D L E G +G+AA++V + F+ HESCGQCTPCR G Sbjct: 464 A-RLADMPLDFDTLGEYGCFIGSAAIVVFSQHDRARVLAENAMEFFAHESCGQCTPCRVG 522 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 T +M++ A LL E+ + +IC LG AA P+Q +++ F Sbjct: 523 TAKAAELMKQPAWDAA------LLTELGTVMMDASICGLGQAAPNPMQSVLRFF 570 >gi|218510549|ref|ZP_03508427.1| formate dehydrogenase protein, beta subunit [Rhizobium etli Brasil 5] Length = 368 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 187/345 (54%), Gaps = 4/345 (1%) Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW + +R Y+V NADE + GT DR IM +P LIEG I+ A GA FIY Sbjct: 13 KWKTVLDAPGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFIY 71 Query: 125 VRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 R E+ ++ AV +G+LG S G DI V GAGAY+CGEETALL SLE Sbjct: 72 TRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLE 131 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RGT Sbjct: 132 GKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQ 191 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 I+G+V Y E + ++ +++++ GG + AV GG P + Sbjct: 192 IAGNVRYGGLYETAFGLSLGDIVDRIGGGT-ATRRPVKAVQVGGPLGAYFPRA-LFDTPF 249 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ + + Sbjct: 250 DYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETAD 309 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ +GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 310 KIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 354 >gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] Length = 570 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 195/349 (55%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ P Y+ VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 236 FPSGKKWGFVRDNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAE 293 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 F+Y+R E+ + L+ + A+ ++ + GY I + GAGAYICGEE+A++ Sbjct: 294 KVFLYMRDEYPQVLALLRTEIAALEAACIVPA----GY---IDLRRGAGAYICGEESAMI 346 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PP+ A VG++G PT V+NVE++ V I R G + + +G Sbjct: 347 ESIEGKRGLPRHRPPYVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGL 406 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P E T ++IE GG+ G A PGG S LPA M Sbjct: 407 RSYSVSGRVAKPGMYELPAGSTITDVIEA-AGGMADG-HRFKAYQPGGPSSGLLPAA-MD 463 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L+ GS +G+AAV+V+ A + F++ ESCGQCTPCR G + Sbjct: 464 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 523 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A + + LL E+S + +IC LG AA PI+ +IK+F Sbjct: 524 KLMQ------ADRWDKPLLEELSTAMVDASICGLGQAAPNPIRLVIKHF 566 >gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8] gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8] Length = 378 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 119/300 (39%), Positives = 183/300 (61%), Gaps = 3/300 (1%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168 IAS+A+GAH ++YVR E+ LQ A+D+ GLLG N G+D DI + GAG Sbjct: 2 TIASYAVGAHQGYVYVRAEYPVAVHRLQIALDQAREYGLLGKNILGKGHDFDIEIRLGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 A++CGEETALL S+EG +G+PR +PPFPA GL+G PT +NNVE+ A + I+R+GA+WY Sbjct: 62 AFVCGEETALLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQIIRKGAAWY 121 Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288 S G E ++GTK+F++ G + VE M T E+IE+ GG A GG Sbjct: 122 SAMGTEKSKGTKVFALGGKITNVGLVEIPMGTTLREIIEEI-GGGIPEGKAFKAAQTGGP 180 Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 S C+PA + I DY+ L +GS +G+ +IVMD ++ F ESCG+C Sbjct: 181 SGGCIPAQHIDTPI-DYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNFTVDESCGKC 239 Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 TPCR GT +++++E++ G + +++ + +++ +++ ++CALG +A P+ ++ F Sbjct: 240 TPCRVGTRKLLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPNPVLSTLQYF 299 >gi|154247855|ref|YP_001418813.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] gi|154161940|gb|ABS69156.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] Length = 422 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/358 (40%), Positives = 196/358 (54%), Gaps = 4/358 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D II +K + LRG GGAGF T KWS D Y+V N +E EPGT KDR ++R Sbjct: 45 DAIIETLKDADLRGMGGAGFPTWRKWSAAAASPCDE-KYVVCNGNEDEPGTFKDRHLLRW 103 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDV 159 PH +IEG +IA+ A+ A+ YV + ++ AVDE AS LL S SK+ G V Sbjct: 104 TPHQVIEGALIAAVAVKANRVVFYVNPHQAEGIDQMRWAVDEWTASDLLASVSKVVGRPV 163 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + V +G YI GEETA++ L+G PR KPPFP G+ G PT +NN E++A VP Sbjct: 164 TLTVAPSSGRYIGGEETAIVSWLDGGFPFPRRKPPFPFESGVGGLPTLINNTETLANVPH 223 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 IL+ GA WY G GTKLFS+SG V P E M + +EL+ H GG+ G Sbjct: 224 ILKNGADWYRDLGVGAAAGTKLFSLSGDVLNPGLYELPMGTSLEELVFVHGGGMLDG-RA 282 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 AV GG S L A + A +D+D +K S LGT A+IV+ T I++ + F Sbjct: 283 FKAVFTGGPSNTLLTARDLDVA-LDFDSVKRRKSRLGTGAMIVISEGTSIVRKVAEYVAF 341 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 + SCGQC C+ GT M R+++R+ G + + L + + + G CAL D A Sbjct: 342 FASGSCGQCPSCKCGTFQMARLLDRIATGRGVEADRQALDHLCRILPGSGRCALIDGA 399 >gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] Length = 629 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 205/365 (56%), Gaps = 9/365 (2%) Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW +V ++ Y++ N DE +PG DR +M PH +IEG +IA+ IGA +IY Sbjct: 203 KWE-AARVQTNPKKYVICNGDEGDPGAFMDRSLMEGNPHCVIEGMMIAARGIGADEGYIY 261 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 VR E+ + ++ AV + A+G LG N G + V GAGA++CGEETAL+ S+E Sbjct: 262 VRAEYPLAVKRMRKAVADAEAAGYLGDNLFGSGQSFRLEVMEGAGAFVCGEETALIASIE 321 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G +G P KPPFPA GL+ PT +NNVE++A +P I+ GA+ Y G E + GTK F+ Sbjct: 322 GLRGMPSPKPPFPAQQGLWRKPTIINNVETLAQIPRIISEGAAAYRALGTETSPGTKTFA 381 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGI---RGGWDN--LLAVIPGGSSVPCLPAGQM 298 ++GHV+ +E T E++ GG+ RG D AV GG S CL + Sbjct: 382 LTGHVSNTGLIEVPFGATLREVVLNIGGGVTDDRGFIDEKGFKAVQIGGPSGGCL-TPDL 440 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L+ +G+ +G+ ++VM++ T ++ F + ESCG+C CREGT + Sbjct: 441 LDLPLDFDSLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCREGTKQL 500 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++ +++G + LL + ++ ++C LG A P+ +K+FR EE + + Sbjct: 501 LALLDDVIEGRGTAETLSLLETLGHAVQVGSLCGLGKTAPNPVLSTLKHFRKDYEEHVFE 560 Query: 419 YHRCN 423 RC+ Sbjct: 561 -KRCS 564 >gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 632 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 201/356 (56%), Gaps = 9/356 (2%) Query: 74 SDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 D P Y++ N DE +PG DR +M PH +IEG +IA+ IGA +IYVR E+ Sbjct: 213 QDNPKKYVICNGDEGDPGAFMDRSVMEGNPHCIIEGMMIAARGIGADEGYIYVRAEYPLA 272 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + ++ AV E A+G LG + G + V GAGA++CGEETAL+ S+EG++G P Sbjct: 273 VKRMRHAVAEAEAAGYLGDDVFGSGQSFRLEVMEGAGAFVCGEETALMASIEGRRGMPAP 332 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFPA GL+ PT +NNVE++A VP I+ +GA Y G E + GTK F+++GHV Sbjct: 333 KPPFPAQKGLWRKPTIINNVETLAQVPRIIGKGAEAYRSLGTEKSPGTKTFALTGHVCNT 392 Query: 252 CTVEESMSITFDELIEKHCGGI---RGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYD 306 +E T E++ GG+ RG D AV GG S CL + +D+D Sbjct: 393 GLIEVPFGATLREVVINIGGGVTDDRGNIDKTGFKAVQIGGPSGGCL-TPDLLDLPLDFD 451 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L+ +G+ +G+ ++VM++ T ++ F + ESCG+C CREGT ++ +++ ++ Sbjct: 452 SLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCREGTKQLLALLDDVI 511 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +G ++LL + ++ ++C LG A P+ +K+FR EE + + RC Sbjct: 512 EGRGTAETLELLETLGHAVQIGSLCGLGKTAPNPVLSTLKHFRKEYEEHVFE-KRC 566 >gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 561 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 194/349 (55%), Gaps = 18/349 (5%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ ++ YL VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 227 FPSGKKWGFV--RANEGTRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAD 284 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ L + + +G++ + G+ I + GAGAYICGEE+A++ Sbjct: 285 TCFIYMRDEYPAVLHILAEEIAKLENAGIV----EKGF---IDLRRGAGAYICGEESAMI 337 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PPF A VG++ PT V+NVE++ V I+R G S + +G Sbjct: 338 ESIEGKRGLPRHRPPFVAQVGIFNKPTLVHNVETLLWVTRIVREGPEVLSSIEKNGRKGL 397 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +SISG VN P T +LI+ G + G + A PGG S LPA + Sbjct: 398 RSYSISGRVNDPGVHLLPAGSTIMDLIDAAGGMLEG--HSFKAYQPGGPSAGLLPA-SIN 454 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +G+ +G+AAV+++ A + F++ ESCGQCTPCR G + Sbjct: 455 DVPMDFDTLQPLGTFIGSAAVVILSDKDSARGAALNMLRFFEDESCGQCTPCRVGCEKAV 514 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++M+ A K + LL E+ + +IC LG AA PI+ +K+F Sbjct: 515 KLMQ------ADKWDQPLLEELCSAMGDASICGLGQAAPNPIRMTMKHF 557 >gi|209516242|ref|ZP_03265100.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] gi|209503353|gb|EEA03351.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] Length = 414 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 146/398 (36%), Positives = 209/398 (52%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G L + G + + K LE + II E+ + LRG GGAGF KW+ + D Sbjct: 16 GADLDAWFACGGGEGLAKALED-PEAIIAEIALADLRGMGGAGFPAHRKWAPV-AAAPDG 73 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A A+ +YV Sbjct: 74 DKYVICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAALATRANHVVLYVNPHQTASLAVT 133 Query: 137 QAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV + + S +G V + V +G YI GEETA++ S+EG PR KPPF Sbjct: 134 REAVKQWSGHAQFAAIESWIGGPVSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G++G PT VNN+E++A VP ILR GA WY G + GTKL+S+SG V P E Sbjct: 194 PAEHGVHGAPTIVNNIETLAHVPGILRHGAQWYRDLGVGDAAGTKLYSLSGDVLRPGLYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + + L+ +H GG+ G AV GG S L + A +D+D +++ S L Sbjct: 254 LPMGTSLETLVFQHGGGMLQG-KEFKAVFTGGPSNTLLTKRDLDVA-LDFDSVRQRRSRL 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IV+ T I++ + F+ SCGQC PC+ GT MMR++ RL G + ++ Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + L + + G C L D A ++ I FR E Sbjct: 372 EALENLCTVLPGSGRCGLIDGAVTVVESSINQFRAEYE 409 >gi|238596288|ref|XP_002394009.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553] gi|215462351|gb|EEB94939.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553] Length = 245 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 110/203 (54%), Positives = 132/203 (65%), Gaps = 20/203 (9%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN Y L + SRG W IL KG WII +K SGLRGRGGAGF Sbjct: 37 LKDQDRIFTNAYCRHDHGLKGAQSRGDWHRTKDILLKGDSWIIQTIKDSGLRGRGGAGFP 96 Query: 62 TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 97 SGLKWSFMNKPNWQNDKRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 156 Query: 119 HCAFIYVRGEFIRE----------------RESLQAAVDECYASGLLGSNS-KLGYDVDI 161 + A+IY+RGEF +E +Q A++E YASGL+G N+ GY D+ Sbjct: 157 NAAYIYIRGEFYQEGTYSGFSLHIILTVCPASHVQQAINEAYASGLIGKNACGSGYSFDV 216 Query: 162 IVHHGAGAYICGEETALLESLEG 184 +H GAGAYICGEETAL+ESL G Sbjct: 217 YLHRGAGAYICGEETALIESLXG 239 >gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] Length = 568 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/352 (38%), Positives = 191/352 (54%), Gaps = 24/352 (6%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +G KW F+ P YL VN DE EPGT KDR + PH +EG +IA++A+ A Sbjct: 234 FPSGRKWGFV--RAEPGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 291 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ + L + A+ L+ K GY + + GAGAYICGEE+A++ Sbjct: 292 RCFIYMRDEYPAVLDILATEIAALEAADLI----KPGY---VELRRGAGAYICGEESAMI 344 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR +PPF A VG++ PT VNNVE++ V ILR G + +G Sbjct: 345 ESIEGKRGLPRHRPPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNTVELNGRKGL 404 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P T ++I G + G A PGG S LPA M Sbjct: 405 RSYSVSGRVKNPGVHLLPAGSTITDIIAAAGGMLDG--HTFKAYQPGGPSSGLLPA-SMH 461 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +D+D L+ G+ +G+AAV+V+ DR+ D + R F++ ESCGQCTPCR G Sbjct: 462 DVPLDFDTLQPHGTFIGSAAVVVLSDHDRARDAALNMLR---FFEDESCGQCTPCRVGCE 518 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++M+ A + LL E+ + +IC LG AA PI+ +K+F Sbjct: 519 KAVKLMQ------ADTWDQPLLTELCTAMSDASICGLGQAAPNPIRLTMKHF 564 >gi|302349194|ref|YP_003816832.1| Putative sulfur reductase membrane anchor subunit, membrane anchor PsrC-like protein [Acidilobus saccharovorans 345-15] gi|302329606|gb|ADL19801.1| Putative sulfur reductase membrane anchor subunit, membrane anchor PsrC-like protein [Acidilobus saccharovorans 345-15] Length = 487 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 213/381 (55%), Gaps = 7/381 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDR 76 +SL + G +++ L + +I+EVK S LRGRGGA F TG+KW S M + + Sbjct: 93 RSLQQYLQLGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAPTK 152 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+VVN DE + G DR +M +P+ +IEG +IA++AIGA + Y+R E+ ++ Sbjct: 153 --YVVVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGKVYFYIRREYPGAVAAV 210 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + AV+E +G +GS + G +V++ VH G G+Y+ GEETA++ ++ G++ +P +PP+P Sbjct: 211 RRAVEEVREAGYIGSKASRGPNVELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYP 270 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE+++ VP I+ G Y+ G +RGTK+ S+S + P E Sbjct: 271 TERGLFGMPTVVNNVETLSSVPWIIENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEV 330 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 ++ E++ GG+R G L V+ G + P LP+ + + L+ +G+ LG Sbjct: 331 EFGVSLREVVYDMGGGVRFGKLKFL-VVGGPLAGPVLPS--ELDVKLGVEELRAIGASLG 387 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER-LVKGIAQKREI 375 VI T +++A+ + F ESCG+C PCR GT ++E L +G E Sbjct: 388 HGNVIAFSDDTSMLEALHEIVHFASFESCGKCFPCRLGTARADEILEEALSRGYLTPAEA 447 Query: 376 DLLYEVSKNIEGRTICALGDA 396 D L ++ + ++C G A Sbjct: 448 DELKSIATAMRAASLCGHGQA 468 >gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 567 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 20/379 (5%) Query: 32 VDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 V K L G DW + + V A+GLRG GGAGF +G KW F+ + P YL VN DE EP Sbjct: 203 VLKGLRAGGDWEAVQDSVLAAGLRGLGGAGFPSGRKWGFV--RANPGPRYLAVNGDEGEP 260 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR + PH +EG +IA++A+ A +IY+R E+ E L+ + A+G++ Sbjct: 261 GTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRREIAALEAAGIV 320 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF A VGL+G PT V+ Sbjct: 321 AK----GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQVGLFGRPTLVH 373 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 N+E++ V + R G + + +G + +S+SG V P T ++I Sbjct: 374 NIETLHWVARVCREGPEVLNSIEKNGRKGLRSYSVSGRVARPGVHLLPAGSTIRDVIAAA 433 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 G G A PGG S LPA M +D+D L+ GS +G+AAV+V+ + Sbjct: 434 GGMAAG--HVFKAYQPGGPSSGLLPA-SMDDIPLDFDTLQPHGSFIGSAAVVVLSQQDSA 490 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 A + F++ ESCGQCTPCR G +++M+ A+ + LL E+ + + + Sbjct: 491 RDAALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------AEHWDQPLLEELCQVMADAS 544 Query: 390 ICALGDAAAWPIQGLIKNF 408 IC LG AA PI+ +K+F Sbjct: 545 ICGLGQAAPNPIRLTMKHF 563 >gi|258591892|emb|CBE68197.1| Putative NADH dehydrogenase; similar to formate dehydrogenase, beta subunit (fdhB1) [NC10 bacterium 'Dutch sediment'] Length = 472 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 204/367 (55%), Gaps = 21/367 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGH----WDNVDKILEKGRDWIINEVKASGLRGRGG 57 LT+ + + +G L D + RG + + + L+ + ++ EV+ S LRGRGG Sbjct: 65 LTEHPQPHIEIRASRGVIL-DRIVRGETGPDYGALRRALDLTSEEVLREVERSELRGRGG 123 Query: 58 AGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 AGF TG KW V H ++VVNADE +PG DR I+ +PH L+EG IA++A Sbjct: 124 AGFPTGRKWR---AVAQQEAHEKFVVVNADEGDPGAYIDRVILERDPHLLLEGVRIAAYA 180 Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEE 175 +GA IY+R E+ +LQ AV E G + V+I+V G G+Y+CGEE Sbjct: 181 VGARRGVIYLRKEYPEALPALQRAVQEA------GRVWPGEFAVEIVV--GQGSYVCGEE 232 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TALL S+EGK+ + R +PP+P GLY PT +NNVE++A +P I++ GA+ Y G Sbjct: 233 TALLNSIEGKRPEVRTRPPYPTARGLYQRPTLINNVETLAAIPWIIQEGAAAYRNLGFSQ 292 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 +RGTKL S++ P E IT E++E GG+ G L +I GG +P Sbjct: 293 SRGTKLLSLNSLFRKPGLYEVEFGITLREVVEGLGGGLCSG--PLKGLIVGGPLAGVIPP 350 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 ++ + ++ L+E+G+G+G V+ D T I++ + F +ESCG+CTPCR G+ Sbjct: 351 -ELLDTRLGFEELREIGAGVGHGGVVAFDDRTSILELAHHVFSFGAYESCGKCTPCRLGS 409 Query: 356 GWMMRVM 362 + +V Sbjct: 410 PRVEQVF 416 >gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 560 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 210/379 (55%), Gaps = 20/379 (5%) Query: 32 VDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 V K L G DW + + V A+GLRG GGAGF +G KW F+ + P YL VN DE EP Sbjct: 196 VLKGLRAGGDWEAVQDSVLAAGLRGLGGAGFPSGRKWGFV--RANPGPRYLAVNGDEGEP 253 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR + PH +EG +IA++A+ A +IY+R E+ E L+ + A+G++ Sbjct: 254 GTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRREIAALEAAGIV 313 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF A VGL+G PT V+ Sbjct: 314 AK----GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQVGLFGRPTLVH 366 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 N+E++ V + R G + + +G + +S+SG V P T ++I Sbjct: 367 NIETLHWVARVCREGPEVLNSVEKNGRKGLRSYSVSGRVARPGVHLLPAGSTIRDVIAA- 425 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 G A PGG S LPA M +D+D L+ GS +G+AAV+V+ + Sbjct: 426 -AGGMAAGHVFKAYQPGGPSSGLLPA-SMDDIPLDFDTLQPHGSFIGSAAVVVLSQQDSA 483 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 A + F++ ESCGQCTPCR G +++M+ A+ + LL E+ + + + Sbjct: 484 RDAALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------AEHWDQPLLEELCQVMADAS 537 Query: 390 ICALGDAAAWPIQGLIKNF 408 IC LG AA PI+ +K+F Sbjct: 538 ICGLGQAAPNPIRLTMKHF 556 >gi|289679201|ref|ZP_06500091.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae FF5] Length = 246 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 111/235 (47%), Positives = 144/235 (61%), Gaps = 4/235 (1%) Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW MPK S YL+ NADE EP T KDR +M PH L+EG +I++ A+ A Sbjct: 1 GFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKA 60 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + +I++RGE++ + L AV E A+GLLG N G+D ++ VH GAG YICGEETA Sbjct: 61 YRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETA 120 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--N 235 L+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP I+ G WY RE Sbjct: 121 LINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSE 180 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 + GTKL SG V P E + EL E + GG+R G+ L PGG+ Sbjct: 181 DHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGF-KLKCWQPGGAGT 234 >gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] Length = 561 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 209/375 (55%), Gaps = 20/375 (5%) Query: 36 LEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 L +G DW + V A+GLRG GGAGF +G KW F+ + P YL VN DE EPGT K Sbjct: 201 LREGGDWEAVQETVLAAGLRGLGGAGFPSGRKWGFV--RANPGPRYLAVNGDEGEPGTFK 258 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 DR + PH +EG +IA++A+ A F+Y+R E+ E L+ + A+GL+ Sbjct: 259 DRHYLERTPHLFLEGMLIAAWAVEAERVFLYMRDEYPAVLEILRRELAALEAAGLIAP-- 316 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 GY + + GAGAYICGEE+A++ES+EG +G PR +PP+ A VG++G PT V+N+E+ Sbjct: 317 --GY---VELRRGAGAYICGEESAMIESIEGNRGIPRHRPPYVAQVGVFGRPTLVHNIET 371 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 + V I R G S + +G + +S+SG V P T ++I+ GG+ Sbjct: 372 LHWVARICREGPEVLSATEKNGRKGLRSYSVSGRVAEPGVYLLPAGSTIRDVIDA-AGGM 430 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 G A PGG S LPA M +D+D L+ GS +G+AAV+V+ A Sbjct: 431 AEG-HVFKAYQPGGPSSGLLPA-HMDDIPLDFDTLQPHGSFIGSAAVVVLSDQDRARDAA 488 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 + F++ ESCGQCTPCR G +++M+ A+ + LL ++ + +IC L Sbjct: 489 LNMLRFFEAESCGQCTPCRVGCEKAVKLMQ------AESWDRALLEDLCDVLADASICGL 542 Query: 394 GDAAAWPIQGLIKNF 408 G AA PI+ +K+F Sbjct: 543 GQAAPNPIRLTMKHF 557 >gi|291436113|ref|ZP_06575503.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291339008|gb|EFE65964.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 308 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 117/291 (40%), Positives = 168/291 (57%), Gaps = 9/291 (3%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 IA++A GAH ++Y+RGE+ R ++ AVD A GLLG + GY DI + GAG Sbjct: 9 TIAAYATGAHTGYLYLRGEYPRALHRMRHAVDRARARGLLGDDVLGQGYAFDIEIRRGAG 68 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AY+CGEETAL S+EG +G+PR KPPFP GL+G PT NNVE++ V IL RGA Y Sbjct: 69 AYVCGEETALFNSIEGYRGEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTRGAPAY 128 Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288 + G + GTKLF +SG V P E T L+E G+R + L AV+ GG+ Sbjct: 129 AATGTPGSTGTKLFCVSGSVERPGVYEVPFGTTLGALLEP--AGVR---EGLRAVLLGGA 183 Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 + + A ++ + ++G +E G+ LG+ V+ D + + + + R++ F++ ESCGQC Sbjct: 184 AGGFVRADELD-IPLTFEGTREAGTTLGSGVVMAFDDTVPLPRLLLRIARFFRDESCGQC 242 Query: 349 TPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAA 397 PCR GT + R+V+ G +I LL EV + + +IC LG A Sbjct: 243 VPCRVGTVRQEEALHRIVERTGADAAGDIALLREVGRAMRDASICGLGQTA 293 >gi|296531991|ref|ZP_06894774.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957] gi|296267683|gb|EFH13525.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957] Length = 412 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 198/373 (53%), Gaps = 10/373 (2%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRD 96 R II ++ SGLRG GGAGF T KW + + +P Y+V N +E EPGT KDR Sbjct: 38 RAGIIPLLERSGLRGMGGAGFPTWRKW----QAVAQQPAGGKYVVCNGNEDEPGTFKDRH 93 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-NSKL 155 ++R PH +IEG +IA+ A+ A +Y+ + AV + LLG+ L Sbjct: 94 LLRWTPHAVIEGGLIAALAVDASHLVLYINPHEAEAVAEARRAVAQWRGHALLGAVEEAL 153 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G+ V + V +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E++A Sbjct: 154 GHAVALTVVESSGRYIGGEETAVISWLEGSFPFPRRKPPFPAEQGVGGAPTLINNTETLA 213 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 +P I GA WY G G GTKL+S+SG V P E M + ELI H GG+ Sbjct: 214 NIPYIFAHGAEWYRGLGVGEAVGTKLYSLSGDVMRPGLYELPMGTSLQELIFTHGGGMLE 273 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G D AV GG S L + A +D+D ++ S LGT A+IV+ T I++ Sbjct: 274 GRD-FKAVFTGGPSNTLLTKRDLDVA-LDFDSVRARQSRLGTGAMIVISEGTSIVRKTAE 331 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F+ SCGQC PC+ GT + R+++R+ G ++ L+ + + + G C L D Sbjct: 332 YIAFFAAGSCGQCPPCKAGTFQLARLLDRIEGGRGTAEDLRALHSLCRILPGSGRCGLID 391 Query: 396 AAAWPIQGLIKNF 408 A ++ ++ F Sbjct: 392 GAVTVVESSLQTF 404 >gi|213612345|ref|ZP_03370171.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 232 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 101/185 (54%), Positives = 132/185 (71%), Gaps = 1/185 (0%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227 Query: 220 ILRRG 224 IL G Sbjct: 228 ILANG 232 >gi|289767858|ref|ZP_06527236.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces lividans TK24] gi|289698057|gb|EFD65486.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces lividans TK24] Length = 312 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 173/307 (56%), Gaps = 17/307 (5%) Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 M +P+ L+E IA++A GAH ++Y+RGE+ R L A+++ GLLG + G Sbjct: 1 MEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTHAIEQARTRGLLGDDVLGQG 60 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 Y DI + GAGAYICGEETAL S+EG++G+PR KPPFP GL+G PT NNVE++ Sbjct: 61 YAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPVEKGLFGKPTVENNVETLVN 120 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V IL GA Y+ G + G KLF +SG V P E T EL+ G+R Sbjct: 121 VLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELPFGATLGELL--ALAGVR-- 176 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 DNL AV+ GG++ G +R +D ++G +E G+ LG+ V+ D + + + Sbjct: 177 -DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGTTLGSGVVMAFDDTVPLPRL 230 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQKREIDLLYEVSKNIEGRTI 390 + R++ F++ ESCGQC PCR GT + R+ G A +I LL EV + + +I Sbjct: 231 LLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAAADDIALLREVGRAMRDASI 290 Query: 391 CALGDAA 397 C LG A Sbjct: 291 CGLGQTA 297 >gi|323718238|gb|EGB27418.1| hypothetical protein TMMG_02285 [Mycobacterium tuberculosis CDC1551A] Length = 217 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 136/205 (66%), Gaps = 25/205 (12%) Query: 16 QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55 Q L+ +SR HWD+ + K L D +I+ VK SGLRGR Sbjct: 4 QATPLTPVISR-HWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62 Query: 56 GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 GGAGF+TG KWSF+P+ + +PHYLVVNADESEPGTCKD +M PH LIEG +IA Sbjct: 63 GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171 ++AI AH AF+YVRGE + L AV E YA+G LG N G+D++++VH GAGAYI Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182 Query: 172 CGEETALLESLEGKKGQPRLKPPFP 196 CGEETALL+SLEG++GQPRL+PP P Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPSP 207 >gi|73982777|ref|XP_864298.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 4 [Canis familiaris] Length = 210 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 116/161 (72%), Gaps = 1/161 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195 >gi|300690964|ref|YP_003751959.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] gi|299078024|emb|CBJ50666.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] Length = 421 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 199/367 (54%), Gaps = 4/367 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+ ++++GL G GGAGF T KW + S Y+VVN +E EPGT KD ++ P Sbjct: 41 IIDTIESAGLAGMGGAGFPTHRKWRAAASL-SASVKYVVVNGNEDEPGTFKDGLLLARTP 99 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-NSKLGYDVDI 161 H ++EG +IA+ AI A YV +L A+ + AS L+ + LG+ V + Sbjct: 100 HQVVEGALIAALAIRATHVVFYVNPRIADGLAALDEAIAQWRASPLVERLAATLGHPVAL 159 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V +G YI GE TA++ SLEG PR KPP P G+ G PT +NN E+IA VP IL Sbjct: 160 AVARSSGRYIGGEATAIVSSLEGGFPFPRRKPPHPTESGIGGAPTLINNTETIANVPHIL 219 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R G + Y G GTKL+S+SG V P E M + EL+ H GG+ GG Sbjct: 220 REGPAAYRALGVGEACGTKLYSLSGDVLRPGLYELPMGTSLRELVFAHGGGMLGG-KAFK 278 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 V GG S L A + A +D+ ++ GS LGT A+IV+ T I++ + R F+ Sbjct: 279 GVFTGGPSNTLLTAADLDVA-LDFASVRARGSNLGTGAMIVIGEGTSIVREVARYVEFFA 337 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQC PC+ GT M R++ R+ G A +R++ L + + + G CAL D A + Sbjct: 338 AESCGQCPPCKCGTFQMARLLHRIDTGAASRRDVTALKSLCETLPGSGRCALIDGAVTVV 397 Query: 402 QGLIKNF 408 + ++ F Sbjct: 398 ESSLRTF 404 >gi|332667238|ref|YP_004450026.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100] gi|332336052|gb|AEE53153.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100] Length = 549 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 13/379 (3%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 ++LE + ++ E+ SGLRGRGGAGF +K + + K ++ Y+V NADE +PG Sbjct: 171 QLLESDPEQLLEEITLSGLRGRGGAGFPLAIKLAGVKKENAEE-KYIVCNADEGDPGAFS 229 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 DR ++ + ++ G I+ + GA +Y+R E+ LQ A++ + + Sbjct: 230 DRYLLEQKAQLVLFGMAISGYISGAQDGVLYIRAEYPEAISILQKAIEPF--NRIFPHQK 287 Query: 154 KLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + G VD +H GAYICGEETALL SLEG + + R +PPFP GL+G PT VNNV Sbjct: 288 RNGERVDFKLHVVKAQGAYICGEETALLSSLEGLRPEVRTRPPFPTQYGLFGKPTAVNNV 347 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++A V IL G + G + GTKL S+ + N P E M +I + G Sbjct: 348 ETLANVYAILSDGGMAFKVIGTAKSSGTKLLSLDSYFNNPGLYEVDMGTPLSVVINELGG 407 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G++ + + A GG +P ++ +D++ G LG A+++ + +++ Sbjct: 408 GLK---EPIKAFHIGGPLGGLVPLHKIADLTIDFESFASQGFLLGHASILSIPTRFPLLE 464 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID--LLYEVSKNIEGRT 389 + L F HESCG+C PCR G+ +R E L K A +ID L ++ +E + Sbjct: 465 YLEHLFAFTAHESCGKCFPCRIGS---VRGKELLQKARAGNYQIDRELWDDLIDTLEKGS 521 Query: 390 ICALGDAAAWPIQGLIKNF 408 +CALG P++ ++ F Sbjct: 522 LCALGGGLPLPVKNAMQYF 540 >gi|302348415|ref|YP_003816053.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus saccharovorans 345-15] gi|302328827|gb|ADL19022.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus saccharovorans 345-15] Length = 481 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 130/392 (33%), Positives = 212/392 (54%), Gaps = 13/392 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDR 76 KSL D ++RG +++ L + +I+EVK S LRGRGGA F TG+KW S M + + Sbjct: 96 KSLRDYLARGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAPAK 155 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++VN DE + G DR +M +P+ +IEG +IA++AIGA + Y+R E+ ++ Sbjct: 156 --YVIVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGRVYFYIRREYPGAVAAV 213 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + AV+E +G L ++ VH G G+Y+ GEETA++ ++ G++ +P +PP+P Sbjct: 214 RRAVEEVREAGYLSPP----LPSELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYP 269 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE+++ VP I+ G Y+ G +RGTK+ S+S + P E Sbjct: 270 TERGLFGMPTVVNNVETLSSVPWIVENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEV 329 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 ++ E++ GG+R G L V+ GG +P+ ++ + + L+ +G+ LG Sbjct: 330 EFGVSLREVVYDMGGGVRFG--KLKGVMIGGPLASLIPSEEL-DVKLGVEELRAIGASLG 386 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 VI T + + + +F ESCG+C PCR GT + R+ KG + E Sbjct: 387 HGNVIAFSDDTSVADMLHEVLLFASFESCGKCFPCRLGTAKLERMFS---KGYLTEEEAR 443 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ + ++C G AA + +K F Sbjct: 444 EAMSIANTMAVASLCGHGQAAGQAVAVTLKKF 475 >gi|255068411|ref|ZP_05320266.1| protein HymB [Neisseria sicca ATCC 29256] gi|255047352|gb|EET42816.1| protein HymB [Neisseria sicca ATCC 29256] Length = 417 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV S+ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVASIVPAIEQWKKSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVAGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L A + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSLRTF 406 >gi|158421745|ref|YP_001523037.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] gi|158328634|dbj|BAF86119.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 417 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 200/367 (54%), Gaps = 4/367 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II ++A+GLRG GGAGF T KW+ + +V N +E EPGT KDR ++R P Sbjct: 41 IIPALEAAGLRGMGGAGFPTHRKWAAA-AAAQNTDRTVVCNGNEDEPGTFKDRHLLRWTP 99 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE-CYASGLLGSNSKLGYDVDI 161 H +IEG +IA+ AIGA F+Y+ + I ++ AV + L ++G +++ Sbjct: 100 HQVIEGALIAALAIGARRVFLYINPQQIEALAEMRRAVAQWADTDRLRAVERRIGATLEL 159 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V +G YI GEETA++ SLEG PR KPPFPA G G PT +NN E++A VP IL Sbjct: 160 TVFPTSGRYIGGEETAVISSLEGGFPFPRRKPPFPAESGYRGTPTLINNTETLANVPHIL 219 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA+WY G GTKL+S+SG V P E M +LI H GG+ G Sbjct: 220 RHGAAWYRRLGLGEAVGTKLYSLSGDVLRPGLYELPMGTPLQDLIFVHGGGMLEG-KAFK 278 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S L A + A +D+D ++ S LGT A+IV+ T I++ + F+ Sbjct: 279 AVFTGGPSNTLLTARDLDVA-LDFDSVRARRSRLGTGAMIVISEGTSIVRKVAEYIDFFA 337 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 SCGQC PC+ GT M R+++R+ G A ++ LY + + + G C L D A + Sbjct: 338 KGSCGQCPPCKAGTFQMARLLDRVDSGRAVPADLAALYNLCQILPGSGRCGLIDGAVTVV 397 Query: 402 QGLIKNF 408 + + F Sbjct: 398 ESSLHTF 404 >gi|319637988|ref|ZP_07992752.1| NADH dehydrogenase [Neisseria mucosa C102] gi|317400633|gb|EFV81290.1| NADH dehydrogenase [Neisseria mucosa C102] Length = 417 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 197/368 (53%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 I+++++ + L G GGAGF T KW + + + Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKNGDKYVVCNANEDEPGTFKDRVLLAKT 100 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYDVD 160 PH +IEG +IA+ A A+ A +Y+ S+ A+++ S L + + LG +D Sbjct: 101 PHQVIEGVLIAAVACRANKAILYINPHQTESIASITPAIEQWKNSDLFIRIENYLGKPLD 160 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P I Sbjct: 161 LQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIPQI 220 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 L +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 221 LAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLKSLIFDHGGGMLEG-RTF 279 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S L A + +D+ ++E S LGT A+IV+ T +++ + F+ Sbjct: 280 KAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVEFF 338 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 339 AANSCGQCPPCKGGTFQLSRLLNRVDTGIGTPDDLRALQSLCQLLPRSGRCGLIDGAVTV 398 Query: 401 IQGLIKNF 408 +Q ++ F Sbjct: 399 LQSSLRTF 406 >gi|261363678|ref|ZP_05976561.1| protein HymB [Neisseria mucosa ATCC 25996] gi|288568227|gb|EFC89787.1| protein HymB [Neisseria mucosa ATCC 25996] Length = 417 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV S+ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVASIVPAIEQWKKSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVAGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVAEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSLRTF 406 >gi|309378256|emb|CBX23118.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 417 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQKANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV S+ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSLRTF 406 >gi|313668001|ref|YP_004048285.1| NADH dehydrogenase [Neisseria lactamica ST-640] gi|313005463|emb|CBN86898.1| putative NADH dehydrogenase [Neisseria lactamica 020-06] Length = 417 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV S+ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIYDHGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSLRTF 406 >gi|225076392|ref|ZP_03719591.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens NRL30031/H210] gi|224952298|gb|EEG33507.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens NRL30031/H210] Length = 417 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQEANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV S+ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSMRTF 406 >gi|261400880|ref|ZP_05987005.1| protein HymB [Neisseria lactamica ATCC 23970] gi|269209226|gb|EEZ75681.1| protein HymB [Neisseria lactamica ATCC 23970] Length = 417 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQEANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV S+ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVEGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSLRTF 406 >gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] Length = 571 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 28/355 (7%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADESEP KDR+++ PH +IEG +A+ +GA ++Y+R E+ + +++A Sbjct: 206 YIVCNADESEPAAFKDRELLLRVPHLVIEGMTLAALTVGAEKGYLYIRHEYHDQIAAVEA 265 Query: 139 AVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E G+LG LG D ++ V G YICGE+TALLE++E ++ +PR +PP P Sbjct: 266 ALAEARERGILGQRI-LGSDRTFELEVFISPGGYICGEQTALLEAMEDRRAEPRNRPPQP 324 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+GCPT +NNVE++A P I +G WY+G G G + SISG V P E Sbjct: 325 MKAGLWGCPTVLNNVETLAWTPAIALKGGKWYAGLGVNGATGMRFVSISGDVKRPGVYEL 384 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA------------------GQM 298 T ELI KH GG++G ++ A+ P G S LPA G+ Sbjct: 385 PFGGTVGELI-KHAGGLKGT-QSVQAIAPSGPSGGFLPARLRVDQVSRKFAERFFTGGRT 442 Query: 299 RGAIMDYDGLKEMGSGLGT---AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +I+D K L +AV+V+ +++ FY++ESCG+C PCR G+ Sbjct: 443 EMSILDLPLDKPTMRMLDVPLLSAVVVIGSEANLLDLAKNCLEFYRNESCGKCVPCRIGS 502 Query: 356 GWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ + E L++ G + + + +++ + +IC LG A P+ L+ F Sbjct: 503 QKLVEIAEDLIQHHGAMSPQRAEAIDDLATAMIQTSICGLGQVAPLPLTTLMTYF 557 >gi|298369169|ref|ZP_06980487.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283172|gb|EFI24659.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 417 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 196/370 (52%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV ++ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAIMYVNPHQTESIAAIVPAIEQWKKSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVEGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSLRTF 406 >gi|94313226|ref|YP_586435.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus metallidurans CH34] gi|93357078|gb|ABF11166.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus metallidurans CH34] Length = 414 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 202/368 (54%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I E++ + LRG GGAGF+T KW+ + +D ++ N +E EPGT KDR ++ H P Sbjct: 41 VIGEIEQADLRGMGGAGFATHRKWAPV-AAAADGDKTIICNGNEDEPGTFKDRFLLEHTP 99 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDI 161 H +IEG +IA+ A A+ +YV + ++ AV + A +L G + + Sbjct: 100 HQVIEGALIAAAATRANHIVLYVNPHQQQAIAVIRQAVGQWQAHPRYAELERLLGAPLSL 159 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V +G YI GEETA++ S+EG PR KPPFP+ G++G P+ VNNVE++A +P IL Sbjct: 160 GVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPFPSQQGVHGAPSIVNNVETLAHIPGIL 219 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R GA WY G N GTKL+S+SG V P E M + + L+ +H GG+ G + Sbjct: 220 RHGAQWYRDLGIGNATGTKLYSLSGDVLRPGLYELPMGTSLESLVFEHGGGMLQGKE-FK 278 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV GG S L + A +D+D ++ S LGT A+IV+ T I++ + F+ Sbjct: 279 AVFTGGPSNTLLTKRDLDVA-LDFDSVRLRRSRLGTGAMIVVSEGTSIVRKVAEFVSFFA 337 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 SCGQC PC+ G+ +MR++ R+ G ++ L + + + G C L D A + Sbjct: 338 QGSCGQCPPCKGGSFQLMRLLNRIDTGRGVHADLAALENLCRILPGSGRCGLIDGAVTVV 397 Query: 402 QGLIKNFR 409 + + FR Sbjct: 398 ESSLHQFR 405 >gi|296314193|ref|ZP_06864134.1| protein HymB [Neisseria polysaccharea ATCC 43768] gi|296839149|gb|EFH23087.1| protein HymB [Neisseria polysaccharea ATCC 43768] Length = 417 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 196/370 (52%), Gaps = 8/370 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQEANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158 PH +IEG +IA+ A A+ A +YV S+ A+++ S L + + LG Sbjct: 99 KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL +GA WY G + GTKL+S+SG V P E M T LI + GG+ G Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDYGGGMLEG-R 277 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396 Query: 399 WPIQGLIKNF 408 +Q ++ F Sbjct: 397 TVLQSSLRTF 406 >gi|241760010|ref|ZP_04758108.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114] gi|241319464|gb|EER55894.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114] Length = 413 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 199/373 (53%), Gaps = 18/373 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99 I+++++ + L G GGAGF T KW V + H Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQDANLCGMGGAGFPTWHKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA---AVDECYASGL-LGSNSKL 155 PH +IEG +IA+ A A+ A +Y + ES+ A A+++ S L + + L Sbjct: 99 KTPHQVIEGVLIAAVACRANKAIMY-------QTESIAAIVPAIEQWKKSDLFIRIENYL 151 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G +D+ + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A Sbjct: 152 GKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVAGEPTLINNTETFA 211 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 +P IL +GA WY G + GTKL+S+SG V P E M T LI H GG+ Sbjct: 212 NIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLE 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G AV GG S L A + +D+ ++E S LGT A+IV+ T +++ + Sbjct: 272 G-RTFKAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVAE 329 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F+ SCGQC PC+ GT + R++ R+ GI ++ L + + + C L D Sbjct: 330 YVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLID 389 Query: 396 AAAWPIQGLIKNF 408 A +Q ++ F Sbjct: 390 GAVTVLQSSLRTF 402 >gi|261381111|ref|ZP_05985684.1| protein HymB [Neisseria subflava NJ9703] gi|284795911|gb|EFC51258.1| protein HymB [Neisseria subflava NJ9703] Length = 417 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 195/368 (52%), Gaps = 4/368 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 I+++++ + L G GGAGF T KW + + + Y+V NA+E EPGT KDR ++ Sbjct: 41 IVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKNGDKYVVCNANEDEPGTFKDRVLLAKT 100 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYDVD 160 PH +IEG +IA+ A A+ A +Y+ S+ A+++ S L + + LG +D Sbjct: 101 PHQVIEGVLIAAVACHANKAILYINPHQTESIASITPAIEQWKNSDLFIRIENYLGKPLD 160 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + + +G YI GEETA++ LEG PR KPPFPA G+ G PT +NN E+ A +P I Sbjct: 161 LQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIPQI 220 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 L +GA WY G + GTKL+S+SG V P E M T LI H G+ G Sbjct: 221 LAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLKSLIFDHGDGMLEG-RTF 279 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV GG S L A + +D+ ++E S LGT A+IV+ T +++ + F+ Sbjct: 280 KAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVEFF 338 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 SCG C PC+ GT + R++ R+ GI ++ L + + + C L D A Sbjct: 339 AANSCGHCPPCKGGTFQLSRLLNRVDTGIGTPDDLRALQSLCQLLPRSGRCGLIDGAVTV 398 Query: 401 IQGLIKNF 408 +Q ++ F Sbjct: 399 LQSSLRTF 406 >gi|329909992|ref|ZP_08275177.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium IMCC9480] gi|327546329|gb|EGF31348.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium IMCC9480] Length = 206 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 98/201 (48%), Positives = 130/201 (64%), Gaps = 2/201 (0%) Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 + G Y+G G+ NN GTK+FS+SG V P E + F L+E GG+R G Sbjct: 1 MFAMGGEAYAGLGKPNNGGTKIFSMSGDVAKPGNYEVPLGTPFATLLEL-AGGMRDG-KK 58 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AVIPGGSS+P L M MDYD + + GS LG+ AVIVMD + ++K++ RLS F Sbjct: 59 IKAVIPGGSSMPVLTGDVMMATDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYF 118 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y ESCGQCTPCREGTGW+ R++ R+ G + ++DLL ++ NI+GRTICALGDAAA Sbjct: 119 YYEESCGQCTPCREGTGWLYRMVHRIEHGQGRADDLDLLNSIADNIQGRTICALGDAAAM 178 Query: 400 PIQGLIKNFRPLIEERIDQYH 420 P++ +IKNFR E I+ H Sbjct: 179 PVRAMIKNFREEFEYHIEHKH 199 >gi|187926569|ref|YP_001892914.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|241666079|ref|YP_002984438.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] gi|187728323|gb|ACD29487.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|240868106|gb|ACS65766.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] Length = 525 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 120/324 (37%), Positives = 182/324 (56%), Gaps = 14/324 (4%) Query: 36 LEKGR----DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 LEK R ++N V AS LRGRGGA F G+KW + C++ Y+VVNADE +PG Sbjct: 152 LEKARRMAPQALVNMVAASRLRGRGGAAFPAGIKWQAVASACAET-KYVVVNADEGDPGA 210 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 DR ++ +P LIE IA+ A+GA +IY+R E+ + A+++ +G LG Sbjct: 211 FSDRFLLEEDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMSHALEQARVAGWLGP 270 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 +L +++V G GAYICGEET+LL +LEG++ + R +PP + GL+G PT V+NV Sbjct: 271 TLEL----ELVV--GQGAYICGEETSLLNALEGRRPEVRPRPPQISECGLFGAPTLVHNV 324 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++ +P I+ GA+ Y+ G N+RGTKL S++ P E I+ +++E+ Sbjct: 325 ETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFRRPGLYEVEFGISLADVVEQLGQ 384 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G N L V GG +P + + Y+ ++ + +G VI T I + Sbjct: 385 GLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQTIDCAVGHGGVIAFADDTSIPR 441 Query: 332 AIWRLSVFYKHESCGQCTPCREGT 355 + ++ F ESCG+CTPC GT Sbjct: 442 IVAQVLRFGARESCGKCTPCHLGT 465 >gi|237800539|ref|ZP_04589000.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023399|gb|EGI03456.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/279 (39%), Positives = 154/279 (55%), Gaps = 6/279 (2%) Query: 142 ECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA VG Sbjct: 3 EAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVG 62 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESM 258 ++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P E Sbjct: 63 VWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPF 122 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 + EL E + GG+R G+ L PGG+ L + A M G+ ++G+ +GT Sbjct: 123 GVQARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTG 180 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q +I+ L Sbjct: 181 LAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEMGQGQPGDIETL 240 Query: 379 YEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + + G+T CA A P+ IK FR E I Sbjct: 241 LGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 279 >gi|309782672|ref|ZP_07677393.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA] gi|308918450|gb|EFP64126.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 449 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 183/324 (56%), Gaps = 14/324 (4%) Query: 36 LEKGRDW----IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 LEK R ++N ++AS LRGRGGA F G+KW + C++ Y+VVNADE +PG Sbjct: 76 LEKARQMAPQALLNMMEASRLRGRGGAAFPAGIKWQAVAGACAET-KYVVVNADEGDPGA 134 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 DR ++ +P LIE IA+ A+GA +IY+R E+ + A+++ +G LG Sbjct: 135 FSDRFLLEDDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMSHALEQARVAGWLGP 194 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 +L +++V G GAYICGEET+LL +LEG++ + R +PP + GL+G PT V+NV Sbjct: 195 TLEL----ELVV--GQGAYICGEETSLLNALEGRRPEVRPRPPQISERGLFGAPTLVHNV 248 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++ +P I+ GA+ Y+ G N+RGTKL S++ P E I+ +++E+ Sbjct: 249 ETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFCRPGLYEVEFGISLADVVEQLGQ 308 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+R G N L V GG +P + + Y+ ++ + +G VI T I + Sbjct: 309 GLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQAIDCAVGHGGVIAFADDTSIPR 365 Query: 332 AIWRLSVFYKHESCGQCTPCREGT 355 + ++ F ESCG+CTPC GT Sbjct: 366 IVAQVLRFGARESCGKCTPCHLGT 389 >gi|218260406|ref|ZP_03475735.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii DSM 18315] gi|218224534|gb|EEC97184.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii DSM 18315] Length = 400 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 105/250 (42%), Positives = 154/250 (61%), Gaps = 3/250 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +++ + ++R + + K L E + +I E+ SGLRGRGG GF TG+KW KV S + Sbjct: 129 ENIDEYIARDGYVALGKALTEMTPESVIKEIMDSGLRGRGGGGFPTGLKWQITRKVKSPQ 188 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V NADE +PG DR I+ +PH+++E I + GA +Y+R E+ E L Sbjct: 189 -KYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGATKGLVYIRAEYPLAVERL 247 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ + GLLG N + DI + +GAGA++CGEETAL+ S+EG +G+ +KPPF Sbjct: 248 KIAIHQAKEYGLLGDNIFGTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPF 307 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P+ G GCPT VNNVE+ A VP IL +GA W+S G E ++GTK+F+++G VN +E Sbjct: 308 PSEHGYKGCPTNVNNVETYANVPVILLKGAEWFSSIGTEKSKGTKVFALAGKVNNVGLIE 367 Query: 256 ESMSITFDEL 265 M T E+ Sbjct: 368 VPMGTTLREV 377 >gi|313680913|ref|YP_004058652.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977] gi|313153628|gb|ADR37479.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977] Length = 538 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 192/381 (50%), Gaps = 26/381 (6%) Query: 29 WDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 ++ D + E G D +I V+ +GLRG GGA F T K + +D Y+VVN DES Sbjct: 178 FEPPDPLPEFPGADALIGAVREAGLRGLGGALFPTARKLEAVRAEAADA-KYVVVNGDES 236 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EPG KDR +M H P + G +A+ A+GA YVRGE+ ++AA E ASG Sbjct: 237 EPGNFKDRWLMEHNPRLVWAGAALAARAVGAGEIVFYVRGEYAAAHARVEAARAELEASG 296 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + G G YICGEE+ALLES+EG++ +PRLKPP+PA GL+G PT Sbjct: 297 YFEG-------LKTQTFRGGGLYICGEESALLESIEGRRAEPRLKPPYPAQAGLFGRPTL 349 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE++A + I GA Y R KLFSISG V P E + +E Sbjct: 350 VNNVETLAHLAWIAAHGAEAY------RARRPKLFSISGDVARPGVYELPLGTPLAGALE 403 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 G ++L AV+ GG++ L +D++ + G +G A++ Sbjct: 404 AAGGAP----EDLQAVLMGGAAGTFLRLPDAAELPLDFEAPRLSGDAVGPGALVAFGGGR 459 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D+ ++ F+ HESCG+C C GT L +A++ L E+ +E Sbjct: 460 DLWAVAEGIAAFFAHESCGKCFSCSLGT-------PHLHAAVARRERGPQLEELFLALEQ 512 Query: 388 RTICALGDAAAWPIQGLIKNF 408 ++C LG AA W ++ LI+ F Sbjct: 513 GSLCGLGQAAPWAVRSLIRRF 533 >gi|149436181|ref|XP_001521364.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV1, partial [Ornithorhynchus anatinus] Length = 149 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 1/137 (0%) Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 IPGGSS P +P +MD+DGL + +GLGTAAVIVMDRSTDI+KAI RL FYKHE Sbjct: 2 IPGGSSTPLIPKSVCETVLMDFDGLVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHE 61 Query: 344 SCGQCTPC-REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 SCGQCTPC R G WM +VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+Q Sbjct: 62 SCGQCTPCVRAGVDWMNKVMWRFVKGEARAAEIDALWEISKQIEGHTICALGDGAAWPVQ 121 Query: 403 GLIKNFRPLIEERIDQY 419 GLI++FRP +E+R ++ Sbjct: 122 GLIRHFRPELEQRFQRF 138 >gi|269836783|ref|YP_003319011.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] gi|269786046|gb|ACZ38189.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] Length = 442 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 15/367 (4%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 N + ASGLRGRGGA F TG KW + P ++VNA ESEP + KDR ++ PH Sbjct: 55 NLIAASGLRGRGGAAFPTGRKWHGV--AAQPAPRVVLVNAAESEPASAKDRTLLLRRPHL 112 Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164 ++EG ++A+ AI A +Y+ R SL+ A+ E A G+ + + IV Sbjct: 113 VLEGALLAARAIDAREIVLYLHATATEVRASLELALRELRADGVQTPHFR-------IVT 165 Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 G Y+ GE +A + G +P KPP P+ G+ PT V NVE++ VP I R G Sbjct: 166 APPG-YVAGESSAAVRRANGGPAKPTFKPPRPSERGVGKRPTLVQNVETLGNVPLIARHG 224 Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284 A+W G N GT L ++SG VN P E + ++E+ GG+ GG ++ A++ Sbjct: 225 ANWLREVGAPNLPGTLLVTLSGAVNRPGVYEVPSGVPLRHIVEELGGGVIGG-ASIQAML 283 Query: 285 PGGSSVPCL-PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST-DIIKAIWRLSVFYKH 342 GG L P +GA ++ + L+ G LG A++V+ + +A W L F+ Sbjct: 284 VGGYFAGWLGPDALEQGARLEPESLRAWGVSLGAGAIVVVPNWICGLAQAAW-LMRFFAD 342 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE-VSKNIEGRTICALGDAAAWPI 401 ES QC C GT M V RL++G A E D L+ + + GR C D AA Sbjct: 343 ESAQQCGTCLYGTRAMADVFARLLRGTASPSERDRLHLWAERMLPGRGACGHLDGAAIAA 402 Query: 402 QGLIKNF 408 + ++ F Sbjct: 403 RTALEVF 409 >gi|187926810|ref|YP_001893155.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|241665140|ref|YP_002983499.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] gi|187728564|gb|ACD29728.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|240867167|gb|ACS64827.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] Length = 480 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 113/338 (33%), Positives = 184/338 (54%), Gaps = 10/338 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + L+ + G D + + ++ V AS LRGRGGAGF G+KW + + Sbjct: 93 RHLAAYLEVGGGDALALARQMAPHALVALVNASRLRGRGGAGFPAGVKWQAVANEAAAT- 151 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+VVNADE +PG DR ++ +P +IE IA+ A+GA ++Y+R E+ + L Sbjct: 152 KYVVVNADEGDPGAFSDRFLLEDDPFLVIEAAAIAAHAVGARHGYLYLRKEYPVAAQVLS 211 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ A+G L ++++++V G GAYICGEET+LL +LEG + + R +PP Sbjct: 212 RALEQARAAGWLAP----AFELELVV--GQGAYICGEETSLLNALEGHRPEVRPRPPQIT 265 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT V+NVE++ +P I++ GA+ Y+ G +RGTKL S++ P E Sbjct: 266 RHGLFGAPTLVHNVETLCAIPWIVKHGAAAYAALGFSGSRGTKLLSLNSLFRRPGLYEVE 325 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT +++++ G+R G L+ ++ GG +P + + Y+ ++ + +G Sbjct: 326 FGITLADIVDQLGQGLRRG--RLIGLMVGGPLAGIVPPALLH-TRLGYEDMQAIDCAVGH 382 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 VI T I + + + F ESCG+CTPC GT Sbjct: 383 GGVIAFGDDTPIARIVAEVLRFGARESCGKCTPCHLGT 420 >gi|297714474|ref|XP_002833671.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like, partial [Pongo abelii] Length = 155 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 84/138 (60%), Positives = 101/138 (73%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 11 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 71 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 130 Query: 122 FIYVRGEFIRERESLQAA 139 +IY+RGEF E +LQ Sbjct: 131 YIYIRGEFYNEASNLQVG 148 >gi|225405648|ref|ZP_03760837.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme DSM 15981] gi|225042842|gb|EEG53088.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme DSM 15981] Length = 350 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 153/246 (62%), Gaps = 3/246 (1%) Query: 18 KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + + G + + K+L E D +I + +GLRGRGGAGF TG+KW + +D+ Sbjct: 106 EDIEEYIGTGGYQALGKVLTEMTPDEVIQTLLDAGLRGRGGAGFPTGLKWKLCKQNDADQ 165 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+ NADE +PG DR ++ +PH L+E IA +AIG++ ++YVR E+ + L Sbjct: 166 -KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGSNQGYVYVRAEYPIAVDRL 224 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + LLG N G+D D+ + GAGA++CGEETAL+ S+EGK+G+PR +PPF Sbjct: 225 TIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETALMTSIEGKRGEPRPRPPF 284 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G P+ +NNVE+ A +P I+ G W++ G E ++GTK+F++ G +N VE Sbjct: 285 PAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSKGTKVFALGGKINNTGLVE 344 Query: 256 ESMSIT 261 M T Sbjct: 345 VPMGTT 350 >gi|291279649|ref|YP_003496484.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1] gi|290754351|dbj|BAI80728.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1] Length = 495 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/369 (30%), Positives = 188/369 (50%), Gaps = 30/369 (8%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + + K+L RD ++ VK S LRGRGGA F T K+ + + S + YLV N DES Sbjct: 144 YITTLTKLLSADRDDLLERVKKSDLRGRGGANFPTYKKFEAIKNINSSK-KYLVCNIDES 202 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP KDR ++ P + G +++++ +GA Y+RGE+I++++ L E + Sbjct: 203 EPFVFKDRALLEINPFVAVAGAILSAYIVGATDIIFYIRGEYIKQKKILS----EITSYF 258 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 LL + +V+I+ GAGAY+CGEET L+ES EGK+G PR KPP+P G++G PT Sbjct: 259 LLEIDFFNSLNVEIV--SGAGAYVCGEETGLIESFEGKRGNPRNKPPYPFESGIFGKPTL 316 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNN+E+++ V + + N +L S+ G V VE + + +E+++ Sbjct: 317 VNNIETLSYVFEVCEKKIV---------NLNKRLISVCGDVKEKGVVEIDLDVAINEIVK 367 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 C G N I GG+S + + D++ S +G+ + + D S Sbjct: 368 NICDRTIG---NPGFAILGGASGFFVDKNNFSKKLRDFE-----KSFVGS--IFIADESR 417 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D + + F+ ESCGQC PC +G + ++ + + K ++ + + +++ Sbjct: 418 DKLSILKYFVSFFADESCGQCIPCYKGYQKLEEILS--INNLNDK--VEDIKSIVESMSV 473 Query: 388 RTICALGDA 396 T C LG A Sbjct: 474 STRCGLGKA 482 >gi|91202933|emb|CAJ72572.1| similar to NADH dehydrogenase I chain F (1st module) EC: 1.6.5.3 [Candidatus Kuenenia stuttgartiensis] Length = 675 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 124/394 (31%), Positives = 193/394 (48%), Gaps = 23/394 (5%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESE 88 + V K + I+ E+ ASGLRGRGGAGF TG+KW + + C R Y+V NA E E Sbjct: 250 NAVHKARAMSPEQIVTELLASGLRGRGGAGFPTGVKWRTLVRHTCPTR--YVVCNAAEGE 307 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR ++R P+ IEG +IA+ A+ A +I ++ F E ++ A+ E + GL Sbjct: 308 PGTFKDRYLLRKNPYATIEGMLIAAHAVNAAGIYIALKRSFGPSIERVRQAISEMASKGL 367 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 + ++I + G Y+ GEE ALL +EG PR P +GL+ P + Sbjct: 368 MDG-------IEIKIVEGPEEYLFGEEKALLNVVEGFPPMPREAYCPPYEIGLFATPNSP 420 Query: 209 N-----NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 N N +++A VP+I+R G + + G + GT +F++ G V P E IT Sbjct: 421 NPALLDNAQTLAHVPSIVRHGGASFRRLGTHDTSGTLIFTVCGDVQRPGVYECEAGITLR 480 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +L GG G +A+ S V C + ++D + +GSGLG+A IV Sbjct: 481 KLFYDVAGGPHTGRQFKVAL----SGVACGVILADRFDTPTEFDAFQMIGSGLGSAGFIV 536 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA---QKREIDLLY 379 +D + I + ++ F ESC QC C+ G ++ L++ + + +D + Sbjct: 537 LDNAASIPRVTQAVARFLYVESCNQCPACKAGLRTASHGIDELLQHLHLHDDRAGLDWIM 596 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 E + + C L A I GL+++FR E Sbjct: 597 EGAHSAPQANRCFLPAQGAKLIPGLVQSFREEFE 630 >gi|256962025|ref|ZP_05566196.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] gi|256952521|gb|EEU69153.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] Length = 296 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 154/277 (55%), Gaps = 5/277 (1%) Query: 136 LQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q A+D +G LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KP Sbjct: 1 FQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKP 60 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P A+VGLY PT VNNVES A VP ILR G + G + GTKL +SGH+ Sbjct: 61 PHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGL 120 Query: 254 VEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E ++ +E+I E++ GG G L + GG S P +R + Y+ L Sbjct: 121 YEVNLGTPLEEIIYGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAH 179 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 + + A++VMD S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A Sbjct: 180 DLSVSSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEAT 239 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ L ++ ++ + C LG + A P++ + F Sbjct: 240 ASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALF 276 >gi|218513053|ref|ZP_03509893.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3] Length = 232 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 104/228 (45%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F + SLSD + G + + + I+ EV SGLRGRGGAG Sbjct: 6 FLKEQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 65 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +R Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 66 FPTGIKWKTVLDAPGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 124 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178 FIY R E+ ++ AV +G+LG S G DI V GAGAY+CGEETAL Sbjct: 125 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 184 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+ Sbjct: 185 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 232 >gi|73982781|ref|XP_864339.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 6 [Canis familiaris] Length = 137 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 80/118 (67%), Positives = 97/118 (82%) Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +V Sbjct: 9 LMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKV 68 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 M R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 69 MARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 126 >gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246] Length = 686 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/436 (29%), Positives = 200/436 (45%), Gaps = 74/436 (16%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ E+K + L G GGAG KW + + + Y+V N DESEPGT KDR+I+ P Sbjct: 241 LLWELKTANLLGMGGAGAPAYQKWLDVWQQPGNE-KYIVCNGDESEPGTFKDREILLRMP 299 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG ++A GA IYVR E+ + +L+ + G G N G + + Sbjct: 300 HLVVEGVILAGLMTGATSGHIYVRHEYFEQIHALKEEIKRAQELGACGPNIFGSGRNFPV 359 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V G YICGE++AL+E++E ++GQPR +PP + G PT VNNVE++A P I+ Sbjct: 360 EVFESPGGYICGEQSALIEAMEDRRGQPRNRPPELSANGFRDKPTVVNNVETLAWAPGII 419 Query: 222 RRGASWYSGFG-------RENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGG 272 G Y G + G +LFS+SG V P E ++ +T EL +K+CGG Sbjct: 420 LFGGDKYEMGGWRLATDPKIKFGGRRLFSVSGDVARPGVYEVAIGLTLGELFNGDKYCGG 479 Query: 273 IRGGWDNLLAVIPGGSSVPC--------------------------------------LP 294 I G + A P G VP LP Sbjct: 480 ITGPLRAVAASGPSGGLVPAKLPVDPKFDAKKRADAVARIRDRSAQDADFMEWFLNTHLP 539 Query: 295 AGQMRGAI----MDYDGLKEMGSGLGT-------AAVIVMDRSTDIIKAIWRLSVFYKHE 343 G + +D + + + L AA+ V D++ + FY++E Sbjct: 540 LGATELDVLKIPLDLNFFRHLNGALRLPVEAMLGAAITVYAGDVDVLDQAVNYTQFYRNE 599 Query: 344 SCGQCTPCREGTGWMMRVMERLVKG-----------IAQKREIDLLYEVSKNIEGRTICA 392 SCG+C PCR G+ ++++ E L+K A K+++ E++K ++ +IC Sbjct: 600 SCGKCVPCRLGSQKLVQIGEGLLKSRRAGRLPADDLAAIKKDVK---EITKTLQLTSICG 656 Query: 393 LGDAAAWPIQGLIKNF 408 LG A P+ ++ F Sbjct: 657 LGYVAPIPLATALEYF 672 >gi|323168546|gb|EFZ54226.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella sonnei 53G] gi|323171966|gb|EFZ57610.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia coli LT-68] Length = 248 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 131/209 (62%), Gaps = 12/209 (5%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF---PANVGLYGCPTTVNNVESIAV 216 ++ VH GAG YICGEETAL+ SLEG++ PR KPP PA YG N S Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPSRQPPA----YGA----NRPVSTTS 219 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSIS 245 P + R +S + G +R K+ + S Sbjct: 220 KPCVTFRRSSLTAWSGIRTSRKVKMLAPS 248 >gi|224826606|ref|ZP_03699707.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] gi|224601207|gb|EEG07389.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] Length = 332 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/263 (36%), Positives = 153/263 (58%), Gaps = 12/263 (4%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L+D ++RG + + + + V+ SGLRGRGGAGF G KW + +DR Y Sbjct: 43 LADYVTRGGGTARQRAMAMAPEELRRAVEMSGLRGRGGAGFPAGRKWQAVAAQPADR-KY 101 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 LVVNADE +PG DR ++ +P ++E +IA+ +GA +IY+R E+ L A Sbjct: 102 LVVNADEGDPGAFSDRFLLEDDPFRVLEAMIIAAHGVGAGQGYIYLRKEYPLAGARLAEA 161 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 +++ +G LG +DV++++ GAG+Y+CGEETALL +LEG++ + RL+PP + Sbjct: 162 IEQARRAGWLGER----FDVELVI--GAGSYLCGEETALLNALEGRRPEVRLRPPQISEC 215 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+G PT ++NVE++ +P ++ GA Y+ G +RGTKL S++ + P E Sbjct: 216 GLFGAPTLLHNVETLCALPWVVEHGAVAYAALGFSLSRGTKLLSLNSLFSRPGLYEVEFG 275 Query: 260 ITFDELIEKHCGGI-----RGGW 277 + E+++K GG RG W Sbjct: 276 LPLSEVVDKLGGGCAAVVSRGSW 298 >gi|331663799|ref|ZP_08364709.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] gi|331059598|gb|EGI31575.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] Length = 248 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 131/209 (62%), Gaps = 12/209 (5%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E +GLLG N G+D Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF---PANVGLYGCPTTVNNVESIAV 216 ++ VH GAG YICGEETAL+ SLEG++ PR KPP PA YG N SI Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPSRQPPA----YGA----NRPVSITS 219 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSIS 245 P + R + + G +R K+ + S Sbjct: 220 KPCVTFRRSLLTAWSGIRTSRKVKMLAPS 248 >gi|325968336|ref|YP_004244528.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta moutnovskia 768-28] gi|323707539|gb|ADY01026.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta moutnovskia 768-28] Length = 516 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 125/402 (31%), Positives = 202/402 (50%), Gaps = 20/402 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKAS-GLRGRGGAGFSTGMKWSFMPKVCS 74 Q + L ++R + +K L +G ++I E+ GL G G + + + Sbjct: 123 QYEPLDKYIARSGYRYFEKFLNEGNKFLILELLVKVGLLGGGALTRLKALASN------A 176 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 DRP YL+VN E EPG KDR IM H L+EG ++ S A+ I V F + Sbjct: 177 DRPKYLIVNGHEGEPGGFKDRLIMERNTHQLLEGALLLSLALNVDEVIIAVNERFRNAKA 236 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ A+DE L + L I V YI GEETAL+ S+EG +G+PRL+PP Sbjct: 237 VIERALDELRT--FLTNRDLLSKLPPITVSLIGSPYIVGEETALINSIEGGRGEPRLRPP 294 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 P GL+G PT V NVE A +P +L +++Y G + K F ++G V+ P Sbjct: 295 DPTEAGLFGKPTAVINVEVAAAIPILL---SNYYEG---KEITIEKYFCVTGDVDRPGLY 348 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E ++I +EL+ K G + +N+ AV GG S + + +++ + + +++G Sbjct: 349 REKLTIGLNELLVK--AGAK--EENVKAVFVGGVSSGLVHSSRIKVRLTPEEA-RKLGVF 403 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG +I + S I+ + + F+ HESCG+C PCR GT ++ ++ER+ G A + + Sbjct: 404 LGPGVIIALSNSRCIVDVMLEVERFFAHESCGRCEPCRLGTRELVNILERISNGKANEED 463 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + V+K + ++C LG +A + + FR EE + Sbjct: 464 LKWAESVAKTMMDTSLCGLGMSAGKVLLDALSQFRDEFEEHV 505 >gi|300697561|ref|YP_003748222.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CFBP2957] gi|299074285|emb|CBJ53832.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CFBP2957] Length = 451 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/369 (33%), Positives = 197/369 (53%), Gaps = 16/369 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++N V+ S LRGRGGAGF G+KW S R Y+VVNADE +PG DR ++ +P Sbjct: 89 LVNMVRDSRLRGRGGAGFPAGIKWQATANE-SARTKYVVVNADEGDPGAFSDRFLLEDDP 147 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 LIE IA+ A+GAH +IY+R E+ L A++E A+G L + ++++ Sbjct: 148 FRLIEAVAIAAHAVGAHGGYIYLRKEYPAAARVLARALEEARAAGWLPP----AFALELV 203 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 V G GAY+CGEET+LL +LEG++ + R +PP GL+G PT V+NVE++ +P I+ Sbjct: 204 V--GRGAYLCGEETSLLNALEGRRPEVRPRPPQITRQGLFGAPTLVHNVETLCAIPWIVT 261 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 GA+ Y+ G +RGTKL S++ P E IT +++E+ G+ G L Sbjct: 262 HGAAAYAALGFSQSRGTKLLSLNSLFRRPGLYEAEFGITLADIVERLGQGLHRG--RLKG 319 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 ++ GG +P ++ + Y+ ++ + +G VI T + + + + F Sbjct: 320 LMVGGPLAGIVPP-ELLHTRLGYEEMQAIDCAVGHGGVIAFADDTPVARIMAEVLRFGAR 378 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKG--IAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 ESCG+CTPC G + + G I + R L+ +++ ++C G A Sbjct: 379 ESCGKCTPCHLGAPILAAMAAAAADGGPIDRGRWQRLVTALAQT----SLCGHGRGLAEF 434 Query: 401 IQGLIKNFR 409 +Q + +++R Sbjct: 435 VQSVQRHYR 443 >gi|323718239|gb|EGB27419.1| hypothetical protein TMMG_02286 [Mycobacterium tuberculosis CDC1551A] Length = 228 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 127/202 (62%), Gaps = 3/202 (1%) Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT EL++ Sbjct: 2 INNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD 61 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + GG+R G L PGGSS P L + +DY+G+ GS LGT A+ + D +T Sbjct: 62 -YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFDETT 118 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G +ID L ++S +I G Sbjct: 119 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILG 178 Query: 388 RTICALGDAAAWPIQGLIKNFR 409 ++ CALGD AA P+ IK+FR Sbjct: 179 KSFCALGDGAASPVMSSIKHFR 200 >gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] Length = 566 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 123/369 (33%), Positives = 188/369 (50%), Gaps = 13/369 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ V+A+ LRGRGGAGF KW + P +V N DE +PG+ DR +M + Sbjct: 201 ILLRVEAAQLRGRGGAGFRAAAKWRA--ALDHPAPRVVVANGDEGDPGSYADRLLMEQDA 258 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H ++EG V+A FA+GA ++VR E+ L+ A+ E +G LG + + G+ +++ Sbjct: 259 HRVLEGLVLACFAVGATTGIVFVRSEYPLAAARLRNALHEARRAGHLGPDIAGSGFSLEV 318 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V GAG+Y+ GEETALL L G +G R +PPFP G +G PT VNNVE++ VP I+ Sbjct: 319 RVAEGAGSYVSGEETALLNGLAGLRGVVRPRPPFPTERGFHGRPTVVNNVETLCAVPWIV 378 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 + G Y+ G + GT + +S P E + ++E+ GG+RGG L Sbjct: 379 QHGGPAYAALGTSDEAGTVIACLSERFLRPGAYEVEIGTPVRRIVEELGGGLRGG-ATLR 437 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A+ GG L + + D L G+ LG A ++ D + + L F Sbjct: 438 AIQIGGPLGGFLGPDDLDVPLSD-TALARHGAALGHAGIVAFDDRLSGEQVLRNLWDFAA 496 Query: 342 HESCGQCTPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCGQC+PCR GT W R + L + +R +V + + ++CA G Sbjct: 497 AESCGQCSPCRVGT-WRGRALAELPDAPDVGSERG-----DVLRTMAAGSLCAFGRRVPA 550 Query: 400 PIQGLIKNF 408 ++ L++ + Sbjct: 551 AVRSLVRVY 559 >gi|51894238|ref|YP_076929.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863] gi|51857927|dbj|BAD42085.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863] Length = 394 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 134/385 (34%), Positives = 199/385 (51%), Gaps = 34/385 (8%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST--GMKWSFMPKVCSD 75 + L+ +RG + ++ +G W++ +V +GLRGRGG+G G KW +V + Sbjct: 14 EDLAAYRARGGYAGLEAARTRGSGWVLEQVTRAGLRGRGGSGDGRPIGQKWQ---RVAAS 70 Query: 76 R--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 R Y+V NA ES+ + KDR ++ PH ++EG +IA+ A+GA A++YVRG+ Sbjct: 71 RVPERYVVANAAESQAVSRKDRYLLARFPHRVLEGLLIAAQALGAREAYLYVRGDSPEAL 130 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + + AV E A+GLLG V + V A + GEETA+L++LEG +G P+ KP Sbjct: 131 DGARDAVAEAGAAGLLGG-------VSVTVQPSAPTAVSGEETAILDALEGLEGYPQPKP 183 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P P +GL G PT V N ES+A V + R G G GT LF+++G V+ P Sbjct: 184 PRPEEIGLRGRPTLVQNAESLAAVAALFRLGVDRVRAVGTPTCPGTALFTVTGAVDRPGV 243 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLK 309 E +L+ R + +LAV+PGG L +G +R +D Y+ L Sbjct: 244 YEVPHGTPLAQLLALAGAPPR---EEILAVLPGG-----LGSGPLRPDELDVPLTYEDLA 295 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKG 368 +GS LG +AV+V R+ + + R +V SCGQC CREG ++R +E Sbjct: 296 ALGSSLGNSAVVVFRRADATLPDLVRENVALLARGSCGQCRGCREGHEGLLRALEAGDAT 355 Query: 369 IAQKREIDLLYEVSKNIEGRTICAL 393 A++R LLY GR CA Sbjct: 356 EARRRAEVLLY-------GRGNCAF 373 >gi|47216621|emb|CAG05422.1| unnamed protein product [Tetraodon nigroviridis] Length = 179 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 84/131 (64%), Positives = 99/131 (75%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 46 LADEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A A+GA A Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 165 Query: 122 FIYVRGEFIRE 132 +IY+RGEF E Sbjct: 166 YIYIRGEFYNE 176 >gi|213400751|gb|ACJ47024.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Ctenocephalides canis] Length = 124 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 77/123 (62%), Positives = 97/123 (78%), Gaps = 1/123 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+AA++E Y GL+G N+ K GY++D+ +H GAG Sbjct: 2 LLAGKAISASAAYIYIRGEFYNEYLILKAALEEAYQKGLIGQNACKSGYNLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IAVVP ILRRG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAVVPDILRRGGEWF 121 Query: 229 SGF 231 + Sbjct: 122 ASL 124 >gi|273160844|gb|ACZ97596.1| mitochondrial complex I subunit [Psalteriomonas lanterna] Length = 147 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/146 (53%), Positives = 99/146 (67%) Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 CGG+RGGWDNLLAVIPGGSS LP +MD+D L + S GTA+++VMD+STDI Sbjct: 1 CGGVRGGWDNLLAVIPGGSSTAPLPKKVCDSVLMDFDSLAAVNSSFGTASILVMDKSTDI 60 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 +KA R + FYK ESCGQCTPCREG W+ +M+ KG + +ID L + ++I GR+ Sbjct: 61 VKAFARQAHFYKEESCGQCTPCREGMHWITDMMDSFAKGEGKLEDIDFLMDTCQHISGRS 120 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEER 415 ICAL D A I GLI N RP +E + Sbjct: 121 ICALADGGAQGIIGLINNSRPFLEAK 146 >gi|298244918|ref|ZP_06968724.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963] gi|297552399|gb|EFH86264.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963] Length = 443 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/390 (28%), Positives = 210/390 (53%), Gaps = 10/390 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + L+ S G + ++ L + + II +V + LRGRGGAG TG KW + + D Sbjct: 20 RGLAAYRSAGGYSALESALRQNTPNQIIQQVTDARLRGRGGAGRLTGEKWRVV-RSTDDD 78 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ NA +++ + R ++ + PH +IEG ++A++A+GA A+++ R + +++ Sbjct: 79 QKYVICNAYDADSRSLAARLLLEYNPHQVIEGIILAAYAVGASEAYLFTRSLYKEGIQTV 138 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAG--AYICGEETALLESLEGKKGQPRLKPP 194 QAA+ E + L+G + LG D + A +I GEET + +++G++G P +PP Sbjct: 139 QAALQEALEANLVGRDI-LGTDFSCTISVVAVDLGFIGGEETVQIAAIKGRRGMPEQRPP 197 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI--SGHVNYPC 252 FPA GL+ PT +N+VE++A VP I+R G ++ G G+K+ ++ +G + PC Sbjct: 198 FPAQYGLWDKPTAINSVETLANVPVIVREGPGAFAQTGTSITGGSKILTVYGAGAESEPC 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 +E T +++ + G+ +++ V+ GG+ LP + I DYD ++ G Sbjct: 258 VIEVPFGTTIRDILTR--AGVNASANDIRGVVVGGAEGGALPP-SLLDTIFDYDPIEAAG 314 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + +G+ + V+ T ++ S + ESCG+C PCR G + ++E +V + Sbjct: 315 AIVGSGVIEVLPVDTCMVAWAMERSRYLSKESCGKCVPCRLGVKRITGILEGVVSDLGVN 374 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++D+L E ++ + ++C G A P++ Sbjct: 375 GDLDVLDEFAQYVPNGSLCGFGVQATNPLK 404 >gi|169666458|gb|ACA63844.1| NADH:ubiquinone oxidoreductase NADH-binding 51kD subunit [Aphanomyces astaci] Length = 172 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 80/134 (59%), Positives = 98/134 (73%), Gaps = 1/134 (0%) Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMG-SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 PGGSSVP + + MD+D LK G SGLGTAAV + D+S D++ AI RLS FY HE Sbjct: 1 PGGSSVPVMDEATCQNIHMDFDDLKNTGGSGLGTAAVTIFDKSVDMVGAIRRLSHFYTHE 60 Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403 SCGQCTPCREGTGWM ++ R+ G A+ EI +L E+S+ IEG TICALGDAAAWP+QG Sbjct: 61 SCGQCTPCREGTGWMESILTRMETGNAELEEIPMLEEISRQIEGHTICALGDAAAWPVQG 120 Query: 404 LIKNFRPLIEERID 417 LIK F+ + ERI+ Sbjct: 121 LIKRFKHKLVERIE 134 >gi|11545457|gb|AAG37857.1|AF298190_7 NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium meliloti] Length = 280 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 149/266 (56%), Gaps = 5/266 (1%) Query: 145 ASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 A+G+LG+ S LG + D+ V GAGAY+CGEET+LL SLEGK+G R KPP PA+ GL+ Sbjct: 4 AAGVLGA-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLPAHKGLF 62 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PT +NNV S+A VP IL +GA +Y FG +RGT I+G+V + E + +T Sbjct: 63 DRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFETAFGLTL 122 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 E++++ GG + AV GG P + DY+ +G A ++V Sbjct: 123 GEIVDEIGGGTASARP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIGHAGIVV 180 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D + D++K F ESCG+CTPCR G+ + V +R+ GI ++ +LL ++ Sbjct: 181 FDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRELLADLC 240 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408 ++ ++CALG +P+ + +F Sbjct: 241 NTMKFGSLCALGGFTPYPVMSAMTHF 266 >gi|329912138|ref|ZP_08275695.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae bacterium IMCC9480] gi|327545684|gb|EGF30831.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae bacterium IMCC9480] Length = 274 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 137/251 (54%), Gaps = 12/251 (4%) Query: 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGA 225 GAGAYICG+ETAL+ESLEGK+G PR+KPP+P N+G G PT+ NNVE+ A V I+ GA Sbjct: 2 GAGAYICGDETALIESLEGKRGTPRVKPPYPVNMGYLGKPTSANNVETFAAVAAIIEHGA 61 Query: 226 SWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285 SW+ G + GT+L SISG + P E + IT +++ K G R W ++ P Sbjct: 62 SWFKAMGTAESTGTRLLSISGDCSAPGIYEIAWGITLADVLAK--AGARDPWAVQVSG-P 118 Query: 286 GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC 345 G V GQ A+ D + ++ DRS D++ + + F+ +ESC Sbjct: 119 SGDCVSVEKDGQRAIALEDLS---------CNGSFMIFDRSRDLLDIVSQFMQFFVNESC 169 Query: 346 GQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 G C PCR G + + + R++ G A ++++D + K + + C LG + PI + Sbjct: 170 GICVPCRSGNVDLFKKINRVIDGKACQKDLDEVVVWGKLVRKTSRCGLGGTSPKPILTTL 229 Query: 406 KNFRPLIEERI 416 +NF L ++ Sbjct: 230 QNFPELYAAKL 240 >gi|213400747|gb|ACJ47022.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Zootermopsis angusticollis] gi|213400749|gb|ACJ47023.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Zootermopsis nevadensis] Length = 124 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 76/121 (62%), Positives = 96/121 (79%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLVGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|213400735|gb|ACJ47016.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Drosophila simulans] Length = 124 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 73/123 (59%), Positives = 93/123 (75%), Gaps = 1/123 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGRAINASAAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W+ Sbjct: 62 AYICGEETAQFESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAIVPDILNRGGEWF 121 Query: 229 SGF 231 + Sbjct: 122 ASL 124 >gi|213400739|gb|ACJ47018.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Litomosoides sigmodontis] Length = 124 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 75/121 (61%), Positives = 95/121 (78%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGRAISTSVAYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPANVGL+GCPT +NNVE+IA+VP ILRRG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPANVGLFGCPTMINNVETIAMVPDILRRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|167830014|ref|ZP_02461485.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9] Length = 273 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 146/262 (55%), Gaps = 6/262 (2%) Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 G+LG+ + ++ V GAGAY+CGEETALLESLEGK+G R KPP PA GL+ PT Sbjct: 1 GVLGT----AHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLPALSGLFAKPT 56 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 +NNV ++A VP I RGA++Y +G +RGT F ++G+V VE + +T EL+ Sbjct: 57 VINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVELAFGVTLRELL 116 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 GG G A + GG LP GQ +DY+ +G+ +G +++ D + Sbjct: 117 FDFGGGTASGRPARAAQV-GGPLGTYLPEGQWD-IPLDYEAYAAVGAVVGHGGIVLHDDT 174 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 +++ + F ESCG+CTPCR G+ + + R+ G +R++ LL ++ + Sbjct: 175 SNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVRLLRDLCDTMT 234 Query: 387 GRTICALGDAAAWPIQGLIKNF 408 ++CA+G +P+ + +F Sbjct: 235 AGSLCAMGGMTPYPVLSALDHF 256 >gi|213400743|gb|ACJ47020.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasutitermes nigriceps] Length = 124 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 76/121 (62%), Positives = 97/121 (80%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGRAICASIAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA+VGL+GCPTT+NNVE+IA+VP ILRRG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPASVGLFGCPTTINNVETIAMVPDILRRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|289807699|ref|ZP_06538328.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 211 Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 117/210 (55%), Gaps = 2/210 (0%) Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + H AG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP IL Sbjct: 2 VCPHRAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAIL 61 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 G WY + + GTKL SG V P E E++E + GG+R G Sbjct: 62 ANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-KFK 120 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A PGG+ L + M+++ + + GS LGTA + +D ++ + L F+ Sbjct: 121 AWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFA 179 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 ESCG CTPCR+G W ++++ L +G Q Sbjct: 180 RESCGWCTPCRDGLPWSVKILRALERGEGQ 209 >gi|213400745|gb|ACJ47021.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Coptotermes acinaciformis] Length = 124 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGRAICASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEWF 121 >gi|758215|emb|CAA88752.1| unknown [Brevundimonas diminuta] Length = 401 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 117/376 (31%), Positives = 184/376 (48%), Gaps = 12/376 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + + ++ + L G+GGA F + K + + R YLVVN E EPG+ KD ++ H Sbjct: 37 EAFLAQIDQAQLSGKGGANFPSARKMRLFHQQAAPR-KYLVVNGGEHEPGSAKDDWLLLH 95 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 P T+IEG + + A+GA + V +++ A +G L G +V Sbjct: 96 HPDTVIEGALCVAHALGATHILVAVNEGRAATVAAVREAAAAIAIAGRLFP----GIEVV 151 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 ++ Y+ GEETALL+++ G+ +P +PP+P G G PT V+NVE++A VP + Sbjct: 152 LVPDE----YVVGEETALLQAVAGQVAKPVRRPPYPIESGHQGMPTLVHNVETLAHVPYL 207 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 L GA Y G G +G L + + + I + L+ + GG++ G + Sbjct: 208 LLLGAEAYRGLG-APGQGVTLCTFGEEFVHAGVRLVPVGIDLNSLLYGYGGGLKSG-QAI 265 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 AV PGG + LPA + A D L+ GS LG AA+ S D++ A + + F+ Sbjct: 266 RAVQPGGPASGFLPADRFDVA-FDSASLRAAGSSLGCAAITAYAASDDLVAAARQRAAFF 324 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 SC QC CR T ++ ++ +L G A R + + + K G+ IC L D P Sbjct: 325 ASASCEQCPQCRMQTQMLLAIVRQLESGKANARTLQQIPVIVKANAGKAICGLIDMPVAP 384 Query: 401 IQGLIKNFRPLIEERI 416 IQ LI F+ I+ R+ Sbjct: 385 IQSLIHYFKGDIDARM 400 >gi|218678493|ref|ZP_03526390.1| NADH dehydrogenase (quinone) [Rhizobium etli CIAT 894] Length = 272 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 139/253 (54%), Gaps = 2/253 (0%) Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G DI V GAGAY+CGEETALL SLEGK+G R KPP PA+ GL+ PT +NNV S+A Sbjct: 8 GRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPAHKGLFDRPTVINNVISLA 67 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 VP I+ +GA++Y FG +RGT I+G+V Y E + ++ ++I++ GG Sbjct: 68 SVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLYETAFGLSLGDIIDRIGGGTAT 127 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G + AV GG P + DY+ +G A ++V D + D++K Sbjct: 128 GRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARF 185 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F ESCG+CTPCR G+ + +++ GI ++ LL ++ ++ ++CALG Sbjct: 186 AMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGG 245 Query: 396 AAAWPIQGLIKNF 408 +P+ + +F Sbjct: 246 FTPYPVMSAMTHF 258 >gi|213400729|gb|ACJ47013.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia longicornis] Length = 124 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/121 (61%), Positives = 95/121 (78%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|301061235|ref|ZP_07202017.1| NADH-quinone oxidoreductase subunit F family protein [delta proteobacterium NaphS2] gi|300444554|gb|EFK08537.1| NADH-quinone oxidoreductase subunit F family protein [delta proteobacterium NaphS2] Length = 293 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 10/216 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100 I V SGL+GRGGAGF G KW +P D PH Y+V N DE EPGT KDR ++ Sbjct: 45 IKKTVLDSGLQGRGGAGFPAGKKWQLLP---DDAPHPRYIVANTDEMEPGTFKDRLLLSV 101 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-- 158 PHT+IEG +IA +A A + ++R + + + A+ E A+G LG LG D Sbjct: 102 HPHTVIEGMIIAGYANSAEKGYFFIRPSYQQIALKFENALSEARAAGFLGQQI-LGSDFS 160 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 +I+VH AG YICGE L+ +L+G++ P ++ GL+G PT VNN E++A VP Sbjct: 161 FEIVVHRSAGRYICGEAKGLIHALQGERPHPNIEGHL-TEEGLWGRPTIVNNAETLAYVP 219 Query: 219 TILRRGASWYSGFGRENNR-GTKLFSISGHVNYPCT 253 I+R GA W+ G+ + G K++S+ G V P + Sbjct: 220 HIVRNGAEWFRDLGKHDKAPGNKIYSVCGRVRRPVS 255 >gi|213400741|gb|ACJ47019.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Folsomia candida] Length = 124 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 75/121 (61%), Positives = 94/121 (77%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 V+A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAG Sbjct: 2 VLAGKAINASAAYIYIRGEFYNEYLILKEALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+I +VP IL RG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIPMVPDILTRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|213400731|gb|ACJ47014.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia vitripennis] Length = 124 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 74/121 (61%), Positives = 94/121 (77%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|120405123|ref|YP_954952.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119957941|gb|ABM14946.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium vanbaalenii PYR-1] Length = 430 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 183/385 (47%), Gaps = 31/385 (8%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMR 99 D + +E+ +G+ GRGGA F +K S + + S R LV N +E EP + KDR ++R Sbjct: 47 DALHDEIARAGVLGRGGAAFPLAVKLSTVRRAHQSGRDTVLVANGEEGEPASVKDRWLLR 106 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 H PH +++G +A+ IGA +YV + R ++ AA+DE L G V Sbjct: 107 HRPHLVLDGLRLAARIIGARHTHVYVSDD--RAAAAVLAALDEITPDALDG--------V 156 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + VH A Y+ GEETA + ++ G +P KPP P G+ G PT V+NVE++A +P Sbjct: 157 TVSVHTVAPGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVGGLPTVVSNVETLANLPY 216 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC-------GG 272 + R A+ Y G + + GT L +++G P E ELI H G Sbjct: 217 VHRHDAAAYRELGTDGSPGTFLATLTGGGRPPGLYEIPFGTAAAELIALHGVPAERVRGA 276 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + GG+ L ++ G ++D++ L+ +GSGLG AV V+ + Sbjct: 277 LMGGY------------FAGLVDRRILGGVLDHESLRGLGSGLGCGAVSVITDECPVAVG 324 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 L+ +Y E+ GQC C GT M L GIA ++ L S+ + GR CA Sbjct: 325 ASVLA-YYDRENAGQCGSCFNGTAAMSAAATALRDGIADGEDLARLRRWSEVLRGRGACA 383 Query: 393 LGDAAAWPIQGLIKNFRPLIEERID 417 DAA ++ F + +D Sbjct: 384 TLDAACNIAASMLAMFPEEVARHLD 408 >gi|213400733|gb|ACJ47015.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Armadillidium vulgare] Length = 124 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/121 (59%), Positives = 94/121 (77%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A A+ A A+IY+RGEF +E L+ A++E Y L+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGRAVSASVAYIYIRGEFYKEYLVLKKALEEAYEENLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL G W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRVKPPFPAGVGLFGCPTTINNVETIAMVPDILNHGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|213400753|gb|ACJ47025.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Dipetalonema gracile] Length = 124 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 71/121 (58%), Positives = 94/121 (77%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ ++ E Y GL+G N+ K Y++D+ +H GAG Sbjct: 2 LLAGKAINASTAYIYIRGEFYNEYLVLKKSLKEAYKEGLIGKNACKSDYNLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGK+G PR+KPPFPA VGL+GCPTT+NNVE+IA++P ILRRG W+ Sbjct: 62 AYICGEETAQLESIEGKRGFPRIKPPFPAEVGLFGCPTTINNVETIAMIPDILRRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|330945472|gb|EGH47027.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str. 1704B] Length = 204 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 105/155 (67%), Gaps = 1/155 (0%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153 R +M PH L+EG +I++ A+ A+ +I++RGE++ + L AV E A+GLLG N Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 G+D ++ VH GAG YICGEETAL+ SLEG++G Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRGN 204 >gi|67043787|gb|AAY63992.1| NADH dehydrogenase flavoprotein 1-like protein [Lysiphlebus testaceipes] Length = 121 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 69/114 (60%), Positives = 88/114 (77%) Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L + S GTAA+IVM++ TD+IKAI RL FYKHESCGQCTPCREG WM ++M R Sbjct: 1 DDLVRVQSSFGTAALIVMNKQTDVIKAIQRLISFYKHESCGQCTPCREGISWMHKIMSRF 60 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+G A+ EID+L+E++K IE TICAL D AAWP+QGL+++FRP IEER+ + Sbjct: 61 VEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLVRHFRPAIEERMINF 114 >gi|213400737|gb|ACJ47017.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Tribolium confusum] Length = 124 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAG Sbjct: 2 LLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL RG W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAVVGLFGYPTTINNVETIAMVPDILNRGGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|146189573|emb|CAM91788.1| hypothetical protein [Platynereis dumerilii] Length = 137 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/120 (60%), Positives = 86/120 (71%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG + ++SRG W +IL K +WI E+ SGL+GRGGAGF Sbjct: 18 LKDQDRIFTNLYGRHDRRPKGAISRGDWYKTKEILIKDNEWIQQEIVKSGLKGRGGAGFP 77 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+GA A Sbjct: 78 TGMKWSFMNKPRDGRPRYLVVNADEGEPGTCKDREIMRRDPHKLVEGCLVAGKAMGARAA 137 >gi|213400755|gb|ACJ47026.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Cordylochernes scorpioides] Length = 124 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/121 (59%), Positives = 92/121 (76%), Gaps = 1/121 (0%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168 ++A AI A A+IY+RGEF E L+ A+ E Y GL+G N+ K YD+D+ +H GAG Sbjct: 2 LLAGRAINASVAYIYIRGEFYNEYLVLKKALKEAYKGGLIGKNACKSDYDLDVFIHRGAG 61 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AYICGEETA LES+EGKKG PR+KPPFPA +GL+GCPTT+NNVE+IA+VP IL R W+ Sbjct: 62 AYICGEETAQLESIEGKKGFPRMKPPFPAGIGLFGCPTTINNVETIAMVPDILYRKGEWF 121 Query: 229 S 229 + Sbjct: 122 A 122 >gi|51947515|gb|AAU14242.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus ovalis] Length = 110 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/110 (64%), Positives = 84/110 (76%) Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+S+SGH+N PCTVE+ MSI+ ELIE+H GG+RGGWDNLL VIPGGSS P + Sbjct: 1 KLYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCE 60 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 A+MD+D L E GS GTA VIV+D+STD+I AI RLS FY ESCGQCT Sbjct: 61 TALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLRESCGQCT 110 >gi|41406836|ref|NP_959672.1| hypothetical protein MAP0738c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395186|gb|AAS03055.1| hypothetical protein MAP_0738c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 436 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 116/381 (30%), Positives = 179/381 (46%), Gaps = 20/381 (5%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH----YLVVNADESEPGTCKDRD 96 D +++EV+ASGL GRGGA F G+K + P +V N +E EP + KDR Sbjct: 47 DQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAPRAGGTVVVANGEEGEPASIKDRW 106 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++R+ PH +++G +A+ +GA ++YV S+++A+ E L G Sbjct: 107 LLRNRPHLVLDGLRLAAAVVGAERGYVYVSDP--EAAHSVESALGELDPDTLGG------ 158 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V + + Y+ GEETA + +L G +P KPP P G+ PT V+NVE++A Sbjct: 159 --VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKPPRPFEAGVGDRPTLVSNVETLAN 216 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 +P + GAS + G + GT L +ISG P E F EL+ H G+ Sbjct: 217 LPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVLYELVHGTPFTELLALH--GVSA- 273 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D + + GG L ++ +D++ ++ GSGLG A+ V+ + A L Sbjct: 274 -DAVRGALMGGYFAGLLNRSVLQ-TTLDHETMRRFGSGLGCGAISVLTDDCPVAVAASVL 331 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + ++ E+ GQC C GT M L G A ++D L S + GR CA DA Sbjct: 332 A-YFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTEDVDRLRRWSVLLRGRGACATLDA 390 Query: 397 AAWPIQGLIKNFRPLIEERID 417 A L+ F + +D Sbjct: 391 ATNVAFSLLDQFPDDVTAHLD 411 >gi|224550185|gb|ACN54177.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia longicornis] gi|224550187|gb|ACN54178.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia giraulti] gi|224550189|gb|ACN54179.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia longicornis] Length = 109 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 69/108 (63%), Positives = 85/108 (78%), Gaps = 1/108 (0%) Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICG 173 AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICG Sbjct: 2 AISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICG 61 Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 EETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL Sbjct: 62 EETAQLESIEGKKGFPRMKPPFPAGVGLFGYPTTINNVETIAMVPDIL 109 >gi|108744325|gb|ABG02411.1| HtxX [Xanthobacter flavus] Length = 496 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 166/354 (46%), Gaps = 32/354 (9%) Query: 18 KSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++ +D + G + + +++ ++ ++ A GR G GF G KW + + + Sbjct: 120 RTFADYRAAGGYGQLRRVMADPGAAARMLAQLSAHQAVGRAGVGFPVGEKWRQV--MAAG 177 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 ++VN DE E KDR I+ +PH ++E ++A+ GA F+YVR ++ Sbjct: 178 GTPVVIVNGDEGELAIFKDRFILETDPHGVLEAALVAARVTGADLVFLYVRDDYAPIHAI 237 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 ++ A++E A+GL + + + GA+ICGEETAL+ SLEG+ +P +PPF Sbjct: 238 VRRALEEVAAAGL-------AEGIGLELRRSGGAFICGEETALIASLEGRAARPTERPPF 290 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN----NRGTKLFSISGHVNYP 251 P G G PT ++NVE T R A+W G + +LFS+SG V P Sbjct: 291 PTTRGYLGRPTLLHNVE------TFYRLTAAWGGTPGSPASVLLDPQVRLFSVSGRVCAP 344 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 +L+E I GG N L ++ GGSS + A R + D L Sbjct: 345 GPKPVRGLSRLADLVE-----IAGGMQNGHALGGLVIGGSSGTLVGAADCRRPLAD---L 396 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 G LGT IV + R++ + ESCGQC PCR GT R++ Sbjct: 397 LAEGLRLGTGGAIVFGADDEPRAIAARMAAYLARESCGQCGPCRIGTAHAARIL 450 >gi|315443529|ref|YP_004076408.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Mycobacterium sp. Spyr1] gi|315261832|gb|ADT98573.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Mycobacterium sp. Spyr1] Length = 426 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/374 (31%), Positives = 175/374 (46%), Gaps = 53/374 (14%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRH 100 +++E+ +G+ GRGGA F +K + + + S R LV N +E EP + KDR ++R+ Sbjct: 45 LLDEIDRAGVLGRGGAAFPLAVKLTTV-RSASLRGVDTVLVANGEEGEPASVKDRWLLRN 103 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +++G +A+ IGA A +Y+ E R ++QAA+ E L G V Sbjct: 104 RPHLVLDGLRLAARIIGARHAHVYLSDE--RAEGAVQAALAETTPDLLDG--------VT 153 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + V Y+ GEETA + ++ G +P KPP P G+ G PT V NVE++A +P + Sbjct: 154 VSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVGGLPTAVCNVETLANLPYV 213 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 R GA Y G + + GT L +++G P E IT E+I H Sbjct: 214 QRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYELPFGITAGEVIALH----------- 262 Query: 281 LAVIPGGSSVPCLPAGQMRGAIM-----------------DYDGLKEMGSGLGTAAVIVM 323 +PA ++RGA+M D++ L+ +GSGLG AV V+ Sbjct: 263 -----------GIPAERVRGALMGGYFAGLLDRRVLDSTLDHEALRALGSGLGCGAVSVL 311 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 + L+ +Y E+ QC C GT M E L G A ++ L S+ Sbjct: 312 TEECPVAVGASVLA-YYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLARLERWSQ 370 Query: 384 NIEGRTICALGDAA 397 + GR CA DAA Sbjct: 371 VLRGRGACATLDAA 384 >gi|145223072|ref|YP_001133750.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145215558|gb|ABP44962.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium gilvum PYR-GCK] Length = 430 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 116/374 (31%), Positives = 175/374 (46%), Gaps = 53/374 (14%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRH 100 +++E+ +G+ GRGGA F +K + + + S R LV N +E EP + KDR ++R+ Sbjct: 49 LLDEIDRAGVLGRGGAAFPLAVKLTTV-RSASLRGVDTVLVANGEEGEPASVKDRWLLRN 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +++G +A+ IGA A +Y+ E R ++QAA+ E L G V Sbjct: 108 RPHLVLDGLRLAARIIGARHAHVYLSDE--RAEGAVQAALAETTPDLLDG--------VT 157 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + V Y+ GEETA + ++ G +P KPP P G+ G PT V NVE++A +P + Sbjct: 158 VSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVGGLPTAVCNVETLANLPYV 217 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 R GA Y G + + GT L +++G P E IT E+I H Sbjct: 218 QRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYELPFGITAGEVIALH----------- 266 Query: 281 LAVIPGGSSVPCLPAGQMRGAIM-----------------DYDGLKEMGSGLGTAAVIVM 323 +PA ++RGA+M D++ L+ +GSGLG AV V+ Sbjct: 267 -----------GIPAERVRGALMGGYFAGLLDRRVLDSTLDHEALRALGSGLGCGAVSVL 315 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 + L+ +Y E+ QC C GT M E L G A ++ L S+ Sbjct: 316 TEECPVAVGASVLA-YYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLARLERWSQ 374 Query: 384 NIEGRTICALGDAA 397 + GR CA DAA Sbjct: 375 VLRGRGACATLDAA 388 >gi|284110216|ref|ZP_06386512.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829782|gb|EFC34087.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] Length = 193 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 4/195 (2%) Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183 + EF+ R SL+ A+++ G LG N G D+D+ + G G+Y+ GEETA+LES++ Sbjct: 1 MNAEFLDARASLEKALEQARTRGFLGRNVMGSGVDLDLEIFEGHGSYVAGEETAMLESMQ 60 Query: 184 GKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 G+ QP+ KPPF P GL+G PT VNNVE+++ VP +LR GA W++ G E + GT LF Sbjct: 61 GRPAQPKEKPPFYPTEFGLHGKPTLVNNVETLSHVPHLLRNGAEWFTEVGAEKSPGTMLF 120 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SG VN P E + LIE+ GG+ G + A+ PGG S + + Sbjct: 121 SLSGAVNRPGVYELPLGTPLRHLIEECGGGVPHG-RAIKAMFPGGPSFAMVGPDALD-LP 178 Query: 303 MDYDGLKEMGSGLGT 317 MD+D LK+ G+GLG+ Sbjct: 179 MDFDALKKAGTGLGS 193 >gi|254818614|ref|ZP_05223615.1| hypothetical protein MintA_01759 [Mycobacterium intracellulare ATCC 13950] Length = 434 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 115/398 (28%), Positives = 186/398 (46%), Gaps = 55/398 (13%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMP---KVCSDRPHYLVV-NADESEPGTCKDRD 96 D ++ EV+ASGL GRGGA F +K + ++ +D +VV N +E EP + KDR Sbjct: 46 DALLGEVEASGLVGRGGAAFPLAVKLRTVRENGRLMADTGGPVVVANGEEGEPASIKDRW 105 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++R+ PH +++G +A+ + A A++YV S++ A+ E LG ++ LG Sbjct: 106 LLRNRPHLVLDGLRLAATLVAADRAYLYVSD--AESAHSVETALGE------LGPDT-LG 156 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + ++ Y+ GEETA + ++ G +P KPP P G+ PT V+NVE++A Sbjct: 157 VPITMLTV--PAGYVAGEETAAVRAINGGPAKPTDKPPRPFEAGVDDRPTLVSNVETLAN 214 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 +P + R G++ + G + GT L +I+G P E + F EL+ H Sbjct: 215 LPYLQRHGSAAFRAQGTPLSPGTFLATITGAGRPPVLYELPHGLPFTELLALH------- 267 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIM-----------------DYDGLKEMGSGLGTAA 319 +PA Q+RGA+M D++ ++ +GSGLG A Sbjct: 268 ---------------GVPADQVRGALMGGYFAGLLNRSVLETTLDHETMRRVGSGLGCGA 312 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 + V+ + A L+ ++ E+ GQC C GT M L G A +++ L Sbjct: 313 ISVITDDCPVAVAASVLA-YFDRENAGQCGSCFNGTAAMAAAAGALRDGAATTEDVERLR 371 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 S + GR CA DAA L+ F + +D Sbjct: 372 RWSVVLRGRGACATLDAATNVAASLLDQFPDEVGAHVD 409 >gi|268323918|emb|CBH37506.1| putative Fe-only hydrogenase, C-terminus [uncultured archaeon] Length = 211 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 117/221 (52%), Gaps = 20/221 (9%) Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PT +NNVE++ VPTI+ +G WYS G N GTKLF ISGHVN P E M +T Sbjct: 2 GKPTAINNVETLCNVPTIIEKGGDWYSKIGSPNAPGTKLFCISGHVNKPGVYEIPMELTL 61 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 ELI+ + GG++G + AV+PGG S L ++ +DY + E GS LG+A+VIV Sbjct: 62 RELIDNYGGGVKGKFK---AVLPGGVSSSLLTDLDVK---LDYKSVAEAGSMLGSASVIV 115 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK-------GIAQKREI 375 ++ + I+ F+ HESCGQCTPCREGT ++ R Sbjct: 116 INGDSSIVDVTKNSMEFFVHESCGQCTPCREGTRTANAIIGRFANGEGREEELEILLELG 175 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 D++Y+ S+ C LG AA IK FR +R+ Sbjct: 176 DVMYDTSR-------CGLGQAAMNITTSAIKMFRDEFMQRV 209 >gi|254773815|ref|ZP_05215331.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 436 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 178/384 (46%), Gaps = 26/384 (6%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRD 96 + +++EV+ASGL GRGGA F G+K + P +V N +E EP + KDR Sbjct: 47 EQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAPGAGGTVVVANGEEGEPASIKDRW 106 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++R+ PH +++G +A+ +GA ++YV S+++A+ E L G Sbjct: 107 LLRNRPHLVLDGLRLAAAVVGAERGYVYVSDP--EAAHSVESALGELDPDTLDG------ 158 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V + + Y+ GEETA + +L G +P KPP P G+ PT V+NVE++A Sbjct: 159 --VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKPPRPFEAGVGDRPTLVSNVETLAN 216 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH---CGGI 273 +P + GAS + G + GT L +ISG P E + F EL+ H + Sbjct: 217 LPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVLYELAHGTPFTELLALHGVSANAV 276 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 RG + GG L ++ +D++ ++ GSGLG A+ V+ + A Sbjct: 277 RG-------ALMGGYFAGLLNRSVLQ-TTLDHETMRRFGSGLGCGAISVLTDDCPVAVAA 328 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 L+ ++ E+ GQC C GT M L G A +D L S + GR CA Sbjct: 329 SVLA-YFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTEGVDRLRRWSVLLRGRGACAT 387 Query: 394 GDAAAWPIQGLIKNFRPLIEERID 417 DAA L+ F + +D Sbjct: 388 LDAATNVAASLLDQFPDDVTAHLD 411 >gi|126436279|ref|YP_001071970.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium sp. JLS] gi|126236079|gb|ABN99479.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium sp. JLS] Length = 433 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 114/368 (30%), Positives = 178/368 (48%), Gaps = 19/368 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHE 101 +++EV+ SGL GRGGA F +K + R + + N +E EP + KDR ++RH Sbjct: 49 LLDEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRGGAVAIANGEEGEPASIKDRWLLRHR 108 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRG-EFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +++G +A+ + A A +YV E R E+ VD G+ S Sbjct: 109 PHLVLDGLRLAARVVEAERAIVYVSDPESARSVETALTQVDSTVLDGVSISV-------- 160 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 ++V G Y+ GEETA + +++G +P KPP P G+ G PT V+NVE++A +P + Sbjct: 161 VVVDPG---YVAGEETAAVRAIDGGPAKPTDKPPRPFEEGVGGLPTLVSNVETLANLPYL 217 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 GA Y G ++ GT L +++G P E + +++ H GI D++ Sbjct: 218 HEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYELPHGVALADVLTWH--GI--SPDSV 273 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 V+ GG L + A +D++ L+ +GSGLG AV V+ + A L+ ++ Sbjct: 274 SGVLMGGYFTGLL-NRDVLDATLDHEALRRLGSGLGCGAVGVLTDECPVAVAASVLA-YF 331 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 E+ GQC C GT M V L G+A ++ L S + GR C DAA Sbjct: 332 DRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLARLERWSVVLRGRGACGTLDAATNV 391 Query: 401 IQGLIKNF 408 L+ F Sbjct: 392 AASLLTAF 399 >gi|241865242|gb|ACS68699.1| NADH dehydrogenase [Sonneratia alba] gi|241865475|gb|ACS68770.1| NADH dehydrogenase [Sonneratia alba] Length = 107 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/107 (66%), Positives = 83/107 (77%) Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G LLAVIPGGSSVP LP + +MDYD LK + SGLGTAAVIVMD+STD++ AI R Sbjct: 1 GLMGLLAVIPGGSSVPLLPKHKCDNVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIAR 60 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 LS FYKHESCGQCTPCREGTGW+ +ME+L G A+ EID+L EV+ Sbjct: 61 LSYFYKHESCGQCTPCREGTGWLWMIMEKLKVGNAKLEEIDMLQEVT 107 >gi|118469883|ref|YP_889068.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium smegmatis str. MC2 155] gi|118171170|gb|ABK72066.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit [Mycobacterium smegmatis str. MC2 155] Length = 431 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 18/377 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHE 101 +++ V+ASGL GRGGA F +K + +V+ N +E EP + KDR ++R+ Sbjct: 45 LLDAVEASGLLGRGGAAFPLAVKLRTVRDNGRAAGGAVVIANGEEGEPASIKDRWLLRNR 104 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 PH +++G +A+ +GAH A +Y + S++ A+ E S G V++ Sbjct: 105 PHAVLDGLRLAALMVGAHRAVLYTSDA--QSARSVEHALAET-------GGSSGGVAVEL 155 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 I Y+ GEE+A + ++G +P KPP P G+ G PT ++NVE++A + + Sbjct: 156 ITV--TTGYVAGEESAAVRVVDGGPAKPTDKPPRPFEEGVGGYPTLISNVETLAHLAYLN 213 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA+ + +G E + GT L +I+G P E + F +++ H G+ D + Sbjct: 214 LHGAADFREYGTEGSPGTFLATITGAGRAPALYELPHGVAFTDVLALH--GVS--PDTVT 269 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 + GG L ++ GA +D++ ++ +GSGLG A+ V+ + A LS ++ Sbjct: 270 GALMGGYFAGLL-GREIVGATLDHETIRGLGSGLGCGAISVLTDDCPVAVAAAVLS-YFD 327 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 E+ GQC C GT M V L G A ++ L S + GR CA D A Sbjct: 328 RENAGQCGSCFNGTAAMAAVATALRDGTATDDDVARLKRWSVVLRGRGACATLDGACNVA 387 Query: 402 QGLIKNFRPLIEERIDQ 418 L+ F ++ +D Sbjct: 388 ASLLSGFDDVVRRHLDN 404 >gi|118463353|ref|YP_880187.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein [Mycobacterium avium 104] gi|118164640|gb|ABK65537.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein [Mycobacterium avium 104] Length = 436 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 115/381 (30%), Positives = 179/381 (46%), Gaps = 20/381 (5%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPK----VCSDRPHYLVVNADESEPGTCKDRD 96 + +++EV+ASGL GRGGA F G+K + +V N +E EP + KDR Sbjct: 47 EQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAAGAGGTVVVANGEEGEPASIKDRW 106 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++R+ PH +++G +A+ +GA ++YV S+++A+ E L G Sbjct: 107 LLRNRPHLVLDGLRLAAAVVGAERGYVYVSDP--EAAHSVESALGELDPDTLGG------ 158 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V + + Y+ GEETA + +L G +P KPP P G+ PT V+NVE++A Sbjct: 159 --VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKPPRPFEAGVGDRPTLVSNVETLAN 216 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 VP + GAS + G + GT L +ISG P E + F EL+ H G+ Sbjct: 217 VPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVLYELAHGTPFTELLALH--GVSA- 273 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D + + GG L ++ +D++ ++ GSGLG A+ V+ + A L Sbjct: 274 -DAVRGALMGGYFAGLLNRSVLQ-TTLDHETMRRFGSGLGCGAISVLTDDCPVAVAASVL 331 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + ++ E+ GQC C GT M L G A ++D L S + GR CA DA Sbjct: 332 A-YFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTEDVDRLRRWSVLLRGRGACATLDA 390 Query: 397 AAWPIQGLIKNFRPLIEERID 417 A L+ F + +D Sbjct: 391 ATNMAASLLDQFPDDVTAHLD 411 >gi|218661814|ref|ZP_03517744.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli IE4771] Length = 187 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 3/188 (1%) Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G KL+ +SG V+ P E M I EL+E H GG+ G + AVIPGG S P +P Sbjct: 3 GPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHG 61 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W Sbjct: 62 LE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNW 120 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++V+ R+ G +++ L + K I G T CALGD AA ++ + +FR I+ Sbjct: 121 TVKVLRRIEAGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVAHIE 180 Query: 418 QYHRCNFQ 425 + HRC F Sbjct: 181 E-HRCPFH 187 >gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 1198 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 183/382 (47%), Gaps = 39/382 (10%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTC 92 K + G + +I E+ S L GRGGAGF TG KW K +D+ Y+V NADE P T Sbjct: 834 KAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPATDK--YVVCNADEGLPSTY 891 Query: 93 KDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 KD ++ HE + G I + IGA F+Y+R E+ +L+ A+ + + Sbjct: 892 KDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIKDVQRT--CP 949 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207 + L Y++ + G G Y+ GEE A ES+EG+ PR P FP GL+ PT Sbjct: 950 ELADLKYEIRL----GGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFHKPTV 1005 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELI 266 +NNVE+ VP I+++G+ FG + KL S++G V P +E + + + + L+ Sbjct: 1006 INNVETFFAVPHIIQQGS---QDFGE--GKMPKLLSVTGDVEQPILIETHLNNYSLNHLL 1060 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA--AVIVMD 324 ++ +++A GG + P + + +D L G G A +V++ + Sbjct: 1061 KEI------DAKDIVAAEIGGCTEPIIFGSK-------FDTLFGFGKGTLNAVGSVVLFN 1107 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S D+ K F ESC QC PCR+G+ R + L + L S++ Sbjct: 1108 SSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALSVASES 1167 Query: 385 IEGRTICALGDAAAWPIQGLIK 406 +ICA G A ++GL+K Sbjct: 1168 AARSSICAHGKA----LEGLVK 1185 >gi|330944403|gb|EGH46418.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str. 1704B] Length = 254 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTK 240 E ++ PR KPPFPA VG++G PT VNNVE++ VP I+ G WY RE + GTK Sbjct: 1 EARRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTK 60 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L SG V P E + EL E + GG+R G+ L PGG+ L + Sbjct: 61 LMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD- 118 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A M G+ ++G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++ Sbjct: 119 AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVK 178 Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ + G Q +I+ L + + G+T CA A P+ IK FR E I Sbjct: 179 MLRAIENGQGQPGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 235 >gi|240170417|ref|ZP_04749076.1| hypothetical protein MkanA1_13985 [Mycobacterium kansasii ATCC 12478] Length = 431 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 17/369 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMR 99 D +++E++++GL GRGGA F G+K + + +VV N +E EP + KDR ++R Sbjct: 46 DTLLHEIESAGLLGRGGAAFPLGVKLRAVRRNGRAAGGAVVVANGEEGEPTSIKDRWLLR 105 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + PH +++G +A+ +GA ++YV AA A LGS++ G V Sbjct: 106 NRPHLVLDGLRLAATIVGAKRGYVYV--------SDPDAARGAEAALAELGSDTLGG--V 155 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y+ GEETA + ++ G +P KPP P VG+ G PT V+NVE++A +P Sbjct: 156 GISVWTVPPGYVAGEETAAVRAINGGPAKPTDKPPRPYEVGVRGRPTLVSNVETLANLPY 215 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 + +RG+S + G ++ GT L +++G P E + F EL+ H G+ + Sbjct: 216 LQQRGSSAFRTQGTPSSPGTFLATVAGANRPPVLYELPHGLRFTELLALH--GVSS--EQ 271 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + + GG L + +D++ ++ GSGLG A+ V+ + A L+ + Sbjct: 272 VRGTLMGGYFAGLLNRSVL-DTTLDHETMRRAGSGLGCGAISVITDDCPVAVAASVLA-Y 329 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 + E+ GQC C GT M V L A ++D L S + GR CA DAA Sbjct: 330 FDRENAGQCGSCFNGTAAMAAVASALRDSAATPEDVDRLRRWSVVLRGRGACATLDAATN 389 Query: 400 PIQGLIKNF 408 L+ F Sbjct: 390 VAGTLLGQF 398 >gi|108800655|ref|YP_640852.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium sp. MCS] gi|119869794|ref|YP_939746.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium sp. KMS] gi|108771074|gb|ABG09796.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium sp. MCS] gi|119695883|gb|ABL92956.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium sp. KMS] Length = 433 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 114/368 (30%), Positives = 177/368 (48%), Gaps = 19/368 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHE 101 ++ EV+ SGL GRGGA F +K + R + + N +E EP + KDR ++RH Sbjct: 49 LLEEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRGGAVAIANGEEGEPASIKDRWLLRHR 108 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRG-EFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +++G +A+ + A A +YV E R E+ VD G+ S Sbjct: 109 PHLVLDGLRLAARVVEAERAIVYVSDPESARSVETALTQVDSPVLDGVSISV-------- 160 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 ++V G Y+ GEETA + +++G +P KPP P G+ G PT V+NVE++A +P + Sbjct: 161 VVVDPG---YVAGEETAAVRAIDGGPAKPTDKPPRPFEEGVGGLPTLVSNVETLANLPYL 217 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 GA Y G ++ GT L +++G P E + +++ H GI D++ Sbjct: 218 HEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYELPHGVALADVLTWH--GI--SPDSV 273 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 V+ GG L + A +D++ L+ +GSGLG AV V+ + A L+ ++ Sbjct: 274 SGVLMGGYFTGLL-NRDVLDATLDHEALRRLGSGLGCGAVGVLTDECPVAVAASVLA-YF 331 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 E+ GQC C GT M V L G+A ++ L S + GR C DAA Sbjct: 332 DRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLARLERWSVVLRGRGACGTLDAATNV 391 Query: 401 IQGLIKNF 408 L+ F Sbjct: 392 AASLLTAF 399 >gi|183984697|ref|YP_001852988.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase chain F), NuoF_1 [Mycobacterium marinum M] gi|183178023|gb|ACC43133.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase chain F), NuoF_1 [Mycobacterium marinum M] Length = 445 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 114/359 (31%), Positives = 169/359 (47%), Gaps = 28/359 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRD 96 D ++ E+ ASGL GRGGA F +K + C ++ N +E EP + KDR Sbjct: 52 DKLLREIDASGLLGRGGAAFPLAVKMRAVRDNCRRAGPAGGAVVIANGEEGEPASFKDRW 111 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRG-EFIRERESLQAAVDECYASGLLGSNSKL 155 ++R+ PH +++G +A+ + A A++YV E R E +D G Sbjct: 112 LLRNRPHLVLDGLRLAAALVAATRAYVYVSDPESARSVERALTQLDPDAFGG-------- 163 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 V + V Y+ GEETA + ++ G +P KPP P G+ G PT V+NVE++A Sbjct: 164 ---VAVSVWAVPPGYVAGEETAAVRAINGGPVKPSDKPPRPFEYGVSGRPTLVSNVETLA 220 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG--- 272 +P + R GAS Y G ++ GT L +I+G P E + F EL+ H Sbjct: 221 NLPYLHRHGASEYRALGTPSSPGTFLATITGAGRAPVLYELPYGLPFSELLALHAVAPTK 280 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 IRG V+ GG L G + G +D++ ++ +GSGLG A+ V+ + A Sbjct: 281 IRG-------VLMGGYFAGLLNRGVL-GTTLDHETMRRLGSGLGCGAISVITDDCPVAVA 332 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 LS ++ E+ GQC C GT M V L A +ID L S + GR C Sbjct: 333 ASVLS-YFDRENAGQCGSCFNGTAAMAAVGGALRDFAATSEDIDRLRRWSVVLRGRGAC 390 >gi|296169557|ref|ZP_06851177.1| possible NADH dehydrogenase (quinone) [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895823|gb|EFG75518.1| possible NADH dehydrogenase (quinone) [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 435 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 178/373 (47%), Gaps = 25/373 (6%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-----YLVVNADESEPGTCKDR 95 D ++ EV+A GL GRGGA F +K + D +V N +E EP + KDR Sbjct: 49 DALLGEVEAGGLVGRGGAAFPLAVKL----RAVRDNGRGAGGAVVVANGEEGEPASLKDR 104 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++R+ PH +++G +A+ +GA A++YV S++ A+ E G+LG Sbjct: 105 WLLRNRPHLILDGLRLAAAMVGADRAYVYVSDP--ESAHSVETALGE-LEPGILGR---- 157 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 V + + Y+ GEETA + ++ G +P KPP P G+ PT V+NVE++A Sbjct: 158 ---VTVAMSAVQPGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVDELPTLVSNVETLA 214 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 +P + RG++ + G + GT L +I+G P E + F EL+ H G+ Sbjct: 215 NLPFLQDRGSAAFRAQGTSLSPGTFLATITGAGRPPVLYELPHGLPFTELLALH--GV-- 270 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + + + GG L + A +D++ ++ +GSGLG A+ V+ + A Sbjct: 271 SPEAVRGALLGGYFAGLLDRTVLE-ATLDHETMRRLGSGLGCGAISVITDDCPVAVAASV 329 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 L+ ++ E+ GQC C GT M L G A +++ L S + GR CA D Sbjct: 330 LA-YFDRENAGQCGSCFNGTAAMAAAAGALRDGAATAEDVERLRRWSVLLRGRGACATLD 388 Query: 396 AAAWPIQGLIKNF 408 AA L+ F Sbjct: 389 AATNVAASLLGRF 401 >gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 641 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 182/382 (47%), Gaps = 39/382 (10%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTC 92 K + G + +I E+ S L GRGGAGF TG KW K +D+ Y+V NADE P T Sbjct: 277 KAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPATDK--YVVCNADEGLPSTY 334 Query: 93 KDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 KD ++ HE + G I + IGA F+Y+R E+ +L+ A+ + + Sbjct: 335 KDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIMDVQRT--CP 392 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207 + L Y++ + G G Y+ GEE A ES+EG+ PR P FP GL+ PT Sbjct: 393 ELADLKYEIRL----GGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFHKPTV 448 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELI 266 +NNVE+ VP I+++G+ FG + KL S++G V+ P E + + + + L+ Sbjct: 449 INNVETFFAVPHIIQQGS---QSFGE--GKMPKLLSVTGDVDAPILFETHLNNYSLNHLL 503 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA--AVIVMD 324 ++ +++A GG + P + + +D L G G A +V++ + Sbjct: 504 KE------IDAKDIVAAEIGGCTEPIIFGSK-------FDTLFGFGKGTLNAVGSVVLFN 550 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S D+ K F ESC QC PCR+G+ R + L + L S++ Sbjct: 551 SSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKTSYNMRALSVASES 610 Query: 385 IEGRTICALGDAAAWPIQGLIK 406 +ICA G A ++GL K Sbjct: 611 AARSSICAHGKA----LEGLFK 628 >gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis] Length = 1206 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 113/372 (30%), Positives = 180/372 (48%), Gaps = 35/372 (9%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTC 92 K + G + +I EV S L GRGGAGF TG KW K SD+ Y+V NADE P T Sbjct: 834 KAVSMGPEKVIEEVFKSNLVGRGGAGFRTGKKWESAYKTPASDK--YVVCNADEGLPSTY 891 Query: 93 KDRDIMRHEP--HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 KD ++ +E + G I + IGA F+Y+R E+ +L+ ++ + ++ Sbjct: 892 KDWCLLNNEAKRKEVFTGMGICAKTIGAKRCFMYLRYEYRNLVPALEQSIKDVQST--CP 949 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207 + L Y++ + G G Y+ GEE A ES+EG+ PR P FP GL+ PT Sbjct: 950 ELADLKYEIRL----GGGPYVAGEENAQFESIEGRAPLPRKDRPGNIFPTMEGLFHKPTV 1005 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELI 266 +NNVE+ +P I+++G+ FG + KL S++G V+ P +E ++ + + + L+ Sbjct: 1006 INNVETFFAIPHIIQQGS---QSFGE--GKMPKLLSVTGDVDEPILIETNLNNYSLNHLL 1060 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA--AVIVMD 324 ++ +++A GG + P + + +D L G G A +V++ + Sbjct: 1061 QEISA------KDIVAAEIGGCTEPIIFGSK-------FDTLFGFGRGTLNAVGSVVLFN 1107 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 S D+ K F ESC QC PCR+G+ R + L + L S++ Sbjct: 1108 SSCDLGKIYENKLKFMAEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALAVASES 1167 Query: 385 IEGRTICALGDA 396 +ICA G A Sbjct: 1168 AARSSICAHGKA 1179 >gi|229489886|ref|ZP_04383742.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit [Rhodococcus erythropolis SK121] gi|229323236|gb|EEN89001.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit [Rhodococcus erythropolis SK121] Length = 403 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/375 (30%), Positives = 175/375 (46%), Gaps = 22/375 (5%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 + G D +I+ + SGL GRGGAGFS G+K M + RP ++ N E EP + KD Sbjct: 27 VPAGDDSVISAISRSGLAGRGGAGFSAGVK---MAAITGRRP-VVIANGSEGEPLSSKDA 82 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G IA+ A+ A AF+ V E L+ A+ E SG Sbjct: 83 VLLSDSPHLVLDGLSIAAAAVRATDAFLVVPASHT---ERLRNAITERRHSG-------- 131 Query: 156 GYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 +D D+ V AG ++ GE+TAL+ ++EGK PR + G+ G PT V+NVE++ Sbjct: 132 -WDRTDVRVVASAGRFVSGEKTALIAAVEGKPPIPRSSLASSSKSGVKGRPTLVHNVETL 190 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI- 273 A V TI R G W+ G + GT L ++SG VN P VE + +E G I Sbjct: 191 AHVATIARFGVDWFRSSGTTSEPGTMLVTLSGAVNNPGVVE----VPIGSRLEWVVGDIG 246 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 R DN AV+ GG + + G + + L +G+ G V + T ++A Sbjct: 247 RADMDNTRAVLVGGYHGTWINRADLAGRRLSRESLAAIGARPGAGVVHALAVDTCGLRAT 306 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 + + ES GQC PC G + V L ++ I + + ++GR C Sbjct: 307 ADIVDYLARESAGQCGPCLNGLPRLASVFGDLAYHRPGEQTIHEIRRYAGLVDGRGACHH 366 Query: 394 GDAAAWPIQGLIKNF 408 D ++ + F Sbjct: 367 PDGTVRLVRSALTAF 381 >gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 110/377 (29%), Positives = 175/377 (46%), Gaps = 37/377 (9%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D + K ++ G +I EV + L GRGGAGF TG KW K + Y+V NADE P Sbjct: 270 DAIKKAVQMGSMKVIKEVTEAKLLGRGGAGFMTGRKWESAYKA-DVKEKYVVCNADEGLP 328 Query: 90 GTCKDRDIMRHEP--HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV----DEC 143 T KD ++ +E ++ G I + IGA ++Y+R E+ +++A + EC Sbjct: 329 STFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEYRNLVPNIEADIKKLQSEC 388 Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVG 200 +L +L G G Y+ GEE A ES++G PR P FP G Sbjct: 389 PELAMLNYEVRL----------GGGPYVAGEENAQFESIQGSAPIPRKDRPSSVFPTIEG 438 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS- 259 L+ PT +NNVE+ A VP I+++G++ + + N KL S+SG V P +E ++ Sbjct: 439 LFFKPTVINNVETFACVPHIVQQGSAAF-----KTNGLPKLLSVSGDVERPLIIECLLNG 493 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 T ++LI+ ++ A GG + P + + M + K + + G+ Sbjct: 494 YTLNDLIKD------AKARDVAAAEIGGCTEPLVFRDKFS---MPFGFGKNVLNAAGS-- 542 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 V++ D + D + F ESC QC PCR+G + + +++ K L Sbjct: 543 VVLFDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKAFDQMRTTGKTKYNERSLK 602 Query: 380 EVSKNIEGRTICALGDA 396 ++ + ICA G A Sbjct: 603 TAAEAAKLSAICAHGKA 619 >gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 114/395 (28%), Positives = 181/395 (45%), Gaps = 40/395 (10%) Query: 15 LQGKSLSDSMSRGHW---DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 L+ K S+ H D + K ++ G +I EV + L GRGGAGF TG KW K Sbjct: 252 LKAKGKEYSLIENHISVKDAIKKAVQMGPMKVIKEVTEAKLLGRGGAGFMTGRKWESAYK 311 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEP--HTLIEGCVIASFAIGAHCAFIYVRGEF 129 + Y+V NADE P T KD ++ +E ++ G I + IGA ++Y+R E+ Sbjct: 312 A-DVKEKYVVCNADEGLPSTFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEY 370 Query: 130 IRERESLQAAV----DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 +++A + EC +L +L G G Y+ GEE A ES++G Sbjct: 371 RNLVPNIEADIKKLQSECPELAMLNYEVRL----------GGGPYVAGEENAQFESIQGS 420 Query: 186 KGQPRLKPP---FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 PR P FP GL+ PT +NNVE+ A VP I+++G++ + + N KL Sbjct: 421 APIPRKDRPSSVFPTIEGLFFKPTVINNVETFACVPHIVQQGSAAF-----KTNGLPKLL 475 Query: 243 SISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 S+SG V P +E ++ T ++LI+ ++ A GG + P + + Sbjct: 476 SVSGDVERPLIIECLLNGYTLNDLIKD------AKARDVAAAEIGGCTEPLVFHDKFS-- 527 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 M + K + + G+ V++ D + D + F ESC QC PCR+G + + Sbjct: 528 -MPFGFGKNVLNAAGS--VVLFDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKA 584 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 +++ K L ++ + ICA G A Sbjct: 585 FDQMRTTGKTKYNERSLKTAAEAAKLSAICAHGKA 619 >gi|263364|gb|AAB24883.1| mitochondrial NADH:ubiquinone oxidoreductase 51 kda subunit [Homo sapiens] Length = 130 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/96 (67%), Positives = 71/96 (73%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 TG+KWSFM K RP YLVVNADE EPGTCKDR+I Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 130 >gi|222873938|gb|EEF11069.1| predicted protein [Populus trichocarpa] Length = 251 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 127/238 (53%), Gaps = 9/238 (3%) Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 +LES+EG++G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y GFG +R Sbjct: 1 MLESIEGRRGIVRSKPPLPAIEGLWGRPTVINNVITLATVPLILARGAAFYQGFGMGRSR 60 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT F ++G++ VE++ ++ EL+E GG G + G PA Sbjct: 61 GTLPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATGRTVKAVQVGGPLGSYVAPADW 120 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 A +DY+ G+ +G ++V D + D+ + F ESCG+CTPCR G+ Sbjct: 121 --DAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTR 178 Query: 358 MMRVMERLVKG-------IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + V++R+V+ ++ LL + ++ ++CA+G +P++ + ++ Sbjct: 179 GVEVIDRIVRAGSDPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHY 236 >gi|327243025|gb|AEA41131.1| putative bifurcating [FeFe] hydrogenase subunit 2 [Clostridium butyricum] Length = 199 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/153 (48%), Positives = 101/153 (66%), Gaps = 2/153 (1%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+E+ S LRGRGG GF TG+KWS + K ++ Y+V N DE +PG DR +M EP Sbjct: 45 IIDEISESSLRGRGGGGFPTGIKWSQVYK-QNENDKYIVCNGDEGDPGAFMDRSMMEGEP 103 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 H +IEG +IA A GAH +IYVR E+ E L+ A+++ GLLG+N G+D +I Sbjct: 104 HRIIEGMIIAGIATGAHKGYIYVRAEYPLAVERLEKAIEQAENKGLLGNNILNSGFDFNI 163 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + GAGA++CGE +AL S+EG +G PR+KPP Sbjct: 164 RISKGAGAFVCGEGSALTTSIEGSRGMPRVKPP 196 >gi|218671476|ref|ZP_03521146.1| formate dehydrogenase protein, beta subunit [Rhizobium etli GR56] Length = 283 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/168 (46%), Positives = 96/168 (57%), Gaps = 2/168 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SLSD + G + + + I+ EV SGLRGRGGAGF TG+KW + DR Sbjct: 117 SLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAGFPTGIKWKTVLDAAGDR-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE + GT DR IM +P LIEG I+ A GA F+Y R E+ ++ Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFVYTRSEYPHAIAAMSE 235 Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 AV +G+LG S G DI V GAGAY+CGEETALL SLEGK Sbjct: 236 AVAIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGK 283 >gi|160334187|gb|ABX24511.1| respiratory-chain NADH dehydrogenase [Streptomyces cacaoi subsp. asoensis] Length = 497 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 161/352 (45%), Gaps = 15/352 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R +++ V+A+GL GRGGAGF T K + RP +VVNA ESEP + KD+ ++ Sbjct: 110 RGSLVDAVEAAGLTGRGGAGFPTARKMRSV-AAGRGRP-VVVVNAMESEPASRKDQFLIA 167 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 PH +++G V+A+ +GA + + ++ L AV+E ++ L V Sbjct: 168 VAPHLVLDGAVLAAVQVGADTVHVCLPRTRTAQQRRLGNAVEERRSARL--------DPV 219 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I +H Y+ E T+L+ L+G +PR PP G+ PT V+N E++A + Sbjct: 220 RIRLHALPHGYVSSESTSLVRWLDGGPARPRGNPPHSHERGVARRPTLVHNAETLAHLAL 279 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I R G W+ G + GT + ++SG V P E + I D + + + Sbjct: 280 IARHGPDWFRRAGTPDEPGTMMITVSGAVTAPGVGEVPLGIPLDTALGRAGDTT----EP 335 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + A++ GG + LPA + + D L +G+ G +I + RS + R+ F Sbjct: 336 VRALLVGGFAGTWLPAEDLHTPLTRRD-LAPLGAAPGAGVLIALPRSACGLLETARILAF 394 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 +S QC PCR G + L G + + L + + R C Sbjct: 395 LGAQSARQCGPCRYGLPAVAEDFAALAAGQSHPELLSRLRRRTGLLPDRGAC 446 >gi|296082757|emb|CBI21762.3| unnamed protein product [Vitis vinifera] Length = 350 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 61/90 (67%), Positives = 68/90 (75%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 177 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 236 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 +G+KWSFMPKV RP YLVVNADESEPGT Sbjct: 237 SGLKWSFMPKVSDGRPSYLVVNADESEPGT 266 >gi|325523856|gb|EGD02083.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49] Length = 292 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/147 (48%), Positives = 94/147 (63%), Gaps = 4/147 (2%) Query: 50 SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SGLRGRGGA F G+KW + + + Y+V NADE + GT DR IM +P+ LIEG Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQARAKQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGM 206 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167 +IA A GA IYVR E+ +L+AA++ +G LG + LG + ++ V GA Sbjct: 207 IIAGIATGATIGHIYVRSEYPDAIATLEAAIERAREAGWLGEHV-LGSAHAFELHVAKGA 265 Query: 168 GAYICGEETALLESLEGKKGQPRLKPP 194 G+Y+CGEETALLESLEGK+G R KPP Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPP 292 >gi|221215864|ref|ZP_03588815.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia multivorans CGD1] gi|221164264|gb|EED96759.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia multivorans CGD1] Length = 281 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 103/181 (56%), Gaps = 2/181 (1%) Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AY+CGEETALLESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y Sbjct: 103 AYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFY 162 Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288 +G +RGT F ++G++ Y VE + +T EL+ GG G A + GG Sbjct: 163 RDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GGP 221 Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 LP Q +DY+ +G+ +G +++ D ++++ + F ESCG+C Sbjct: 222 LGTYLPEHQW-DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKC 280 Query: 349 T 349 T Sbjct: 281 T 281 >gi|32394530|gb|AAM93963.1| NADH dehydrogenase [Griffithsia japonica] Length = 170 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 61/112 (54%), Positives = 80/112 (71%), Gaps = 2/112 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA-GF 60 L+D+DRIFTNLY L +M RG W +++ GR WI++E+KA R GA GF Sbjct: 57 LSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGAPGF 116 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 +G+K+SFMP D RP+YLVVNADESEPGTCKDR+I+R +PH L+EGC++ Sbjct: 117 PSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLL 168 >gi|322369579|ref|ZP_08044143.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haladaptatus paucihalophilus DX253] gi|320550749|gb|EFW92399.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haladaptatus paucihalophilus DX253] Length = 517 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 174/383 (45%), Gaps = 45/383 (11%) Query: 41 DWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + +I+ V+ GL RGRG A + + +D +VVNA E++ DR ++ Sbjct: 148 ETVISRVETVGLLGRGRGDARMDEPVAEEWRTARETDGDPVVVVNAGETDDRNATDRTLL 207 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 +P +++G + AIGA +Y + RE ++ A+ +++ Sbjct: 208 EADPVAVLDGATAVASAIGAEDIVVYCPESALGTRERVRKAMTAF-------NDTDAAEG 260 Query: 159 VDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 V I YI E T LE+LEG + + RL+PP P GLYG PT V+ + A V Sbjct: 261 VTIRTFAAPDMYIAAEPTMALEALEGNDRLEARLRPPSPGEHGLYGRPTIVHTPRTFAQV 320 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-------ESM--SITFDELIEK 268 ILR ++ + GT+L +++G V P T+E E++ +++ D + Sbjct: 321 RRILRDPDAFDPDD---ADPGTRLLTVTGDVTAPATLELPTGGSLETVLEAVSVDSEFKM 377 Query: 269 HC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 C GG GG L P PA + GA + DG+ E+ D+S Sbjct: 378 ACVGGQFGGVTRSL------DHTPSAPA--LTGARLGTDGVVEL-----------FDQSR 418 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 + + F + E+CG+C PCREG+ + ++ + G + + D+L E+++ + Sbjct: 419 CAVVTAGTRARFAEEENCGRCVPCREGSKQLTNLLRDIYSG---EFKDDMLRELARTMRE 475 Query: 388 RTICALGDAAAWPIQGLIKNFRP 410 +IC G +A+ P+ + F P Sbjct: 476 TSICYFGRSASRPVTTAMDEFEP 498 >gi|289810293|ref|ZP_06540922.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 157 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/110 (51%), Positives = 78/110 (70%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I+++VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 PH L+EG +I++FA+ A+ +I++RGE+I L+ A+ E +G LG Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGCLG 157 >gi|324549306|gb|ADY49747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum] Length = 112 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 54/85 (63%), Positives = 68/85 (80%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L E SGLGTAAVIVM++ DI+K I RLS+FYKHESCGQCTPCREG W+ +VM Sbjct: 1 MDFDSLIEAQSGLGTAAVIVMNKQADIVKCIARLSLFYKHESCGQCTPCREGCNWLNKVM 60 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEG 387 R V G A+ EID+L+E+S+++EG Sbjct: 61 WRFVHGRAKPDEIDMLWEISRHMEG 85 >gi|225164245|ref|ZP_03726518.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224801150|gb|EEG19473.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 128 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 51/106 (48%), Positives = 72/106 (67%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS G+ VIVMD S ++++A+ ++ FY HESCGQCTPCREG+ WM ++ Sbjct: 1 MDFDTLAACGSMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWMKKIT 60 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+V G A+ + LL V+ I GRTICA+G+A +WP Q ++ F Sbjct: 61 ARMVHGTARAEDAALLKGVADQIPGRTICAMGEACSWPTQSFLQKF 106 >gi|291334209|gb|ADD93876.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S08-C1340] Length = 126 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 59/115 (51%), Positives = 79/115 (68%), Gaps = 2/115 (1%) Query: 110 VIASFAIGAHCAFIYVRGEFIRERE-SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 +I+S+AIGA + Y+RGEFI ++ AV E Y +G N + +DI+ GA Sbjct: 2 LISSYAIGASVGYNYLRGEFIGDQWIVFNKAVKEAYKYNFIGKNILRSNLCIDIVPLIGA 61 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 GAYI GEETA+LES+EGK+G PR+KPPFPA GLYG PT +NN E++A VP I++ Sbjct: 62 GAYIVGEETAMLESIEGKRGMPRIKPPFPAVQGLYGKPTIINNTETLATVPYIIK 116 >gi|213618598|ref|ZP_03372424.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 220 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 3/202 (1%) Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 P IL G WY + + GTKL SG V P E E++E + GG+R G Sbjct: 1 PAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL 60 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 A PGG+ L + M+++ + + GS LGTA + +D ++ + L Sbjct: 61 -KFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLE 118 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA Sbjct: 119 EFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 178 Query: 397 AAWPIQGLIKNFRPLIEERIDQ 418 A P+Q IK FR E I Q Sbjct: 179 AVEPLQSAIKYFREEFEAGIKQ 200 >gi|294629306|ref|ZP_06707866.1| oxidoreductase [Streptomyces sp. e14] gi|292832639|gb|EFF90988.1| oxidoreductase [Streptomyces sp. e14] Length = 536 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 16/372 (4%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRD 96 G + + +A LRGRGGAGF K + R +VVN E EP KD Sbjct: 45 GGEQLAQLAEAINLRGRGGAGFPFHKKLRSVADSAIKRGVRPVVVVNGSEDEPACRKDTV 104 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ PH +++G ++ + A+GA + V RES Q +++ A L + + Sbjct: 105 LINRAPHLILDGALLCAEALGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSA 158 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 159 LRAR--VQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQTGVGGAPTLLSNAETFAQ 216 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + R G Y G + GT + ++SG V P +E + +++ + G Sbjct: 217 LAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGA 271 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 V+ GG + A + AI+ + L +G LG A++ + ++T + ++ Sbjct: 272 PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPISQNTCPLGESLQV 331 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + + ES GQC PC G R ME ++ G ++ L +V++N++ R C+ D Sbjct: 332 AKWLAEESAGQCGPCYLGLPAAARGMEDILNG-GGPAALEALKQVARNVKRRGACSHPDG 390 Query: 397 AAWPIQGLIKNF 408 +A ++ +K F Sbjct: 391 SAMFLESTVKAF 402 >gi|21221032|ref|NP_626811.1| oxidoreductase [Streptomyces coelicolor A3(2)] gi|289771690|ref|ZP_06531068.1| oxidoreductase [Streptomyces lividans TK24] gi|6714679|emb|CAB66251.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] gi|289701889|gb|EFD69318.1| oxidoreductase [Streptomyces lividans TK24] Length = 524 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 161/359 (44%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 L+GRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 46 LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA I V RES Q +++ A L + + V Sbjct: 106 LLCAEAMGARTLVIGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 157 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R G Y Sbjct: 158 MVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFAQLAIAARIGPERYG 217 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P +E + +++ + G V+ GG Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + AI+ + L+++G LG A++ + + T + R++ + ES GQC Sbjct: 273 GKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLRVAQWLAEESAGQCG 332 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R +E ++ G ++ + +V+KN++ R C+ D +A ++ +K F Sbjct: 333 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 390 >gi|256787805|ref|ZP_05526236.1| oxidoreductase [Streptomyces lividans TK24] Length = 536 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 161/359 (44%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 L+GRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 58 LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 117 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA I V RES Q +++ A L + + V Sbjct: 118 LLCAEAMGARTLVIGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 169 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R G Y Sbjct: 170 MVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFAQLAIAARIGPERYG 229 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P +E + +++ + G V+ GG Sbjct: 230 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 284 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + AI+ + L+++G LG A++ + + T + R++ + ES GQC Sbjct: 285 GKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLRVAQWLAEESAGQCG 344 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R +E ++ G ++ + +V+KN++ R C+ D +A ++ +K F Sbjct: 345 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 402 >gi|256371785|ref|YP_003109609.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008369|gb|ACU53936.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 408 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 162/350 (46%), Gaps = 39/350 (11%) Query: 54 GRGGAGFSTGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 GRGGAGF K + V S R P +V N ESEPG KD+ ++ H PH +++G +A Sbjct: 59 GRGGAGFPLARKLA---AVASQRGPRVVVANGAESEPGARKDKALLTHAPHLVLDGLGLA 115 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 + + A A + AV++ A+ +L + D + V +Y+ Sbjct: 116 TRLLEAREAIV---------------AVEDATAADVLERAIRERSDA-VRVALLDRSYLT 159 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 G+ETALL +LEG+ PR + A G PT V NVE++A R G SW+ G Sbjct: 160 GQETALLAALEGRPALPRFQLARVAERGYKSRPTLVANVETLAQWALAARFGTSWHQSAG 219 Query: 233 -RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG--GSS 289 R ++R T++ SI+ + P VE + T L++ G+ G LA++ G G Sbjct: 220 TRGHDRSTRIVSIALPGSTPTVVELAPGATVRSLLD--AVGVTTG----LALVGGLFGEL 273 Query: 290 VPCLPAGQMRGAIMD-YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 + M ++D D E+ LG +V++ +T ++ A L + E GQC Sbjct: 274 ISVADERAMARVLVDRADSSDEL--ALGAGSVLLAPSATCVVCATSELVGYLSEERAGQC 331 Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 PC G + R + A R + L V++ I R CAL DAAA Sbjct: 332 GPCDRGLPELARALG------AGARPAE-LATVARLIARRGACALPDAAA 374 >gi|307328405|ref|ZP_07607581.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Streptomyces violaceusniger Tu 4113] gi|306885978|gb|EFN16988.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Streptomyces violaceusniger Tu 4113] Length = 504 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 100/370 (27%), Positives = 163/370 (44%), Gaps = 26/370 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIM 98 D ++ + LRGRGGAGF K + + R +VVN E EPG KD ++ Sbjct: 44 DELVALAENIDLRGRGGAGFPFATKVQAVVESAGRREGRCAVVVNGSEGEPGCLKDTALL 103 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H PH +I+G V+A+ A+GA I V + ES+ AA+ E SG Sbjct: 104 LHTPHLVIDGAVLAAEALGAEEVAIAVHRADV--EESVAAAIAERGPSG----------- 150 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 V + V+ ++ GE A++ + G P + ++ GL G PT ++N E+ A + Sbjct: 151 VPVSVNRTPDRFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLSGLPTLLSNTETFAQLA 210 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 R GA Y G GT L ++ G Y + +T+ + + CG G Sbjct: 211 VAARMGALPYRSVGLPTEPGTTLLTVGG--KYVMETPTGVPLTY---VLELCGLTPG--- 262 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV+ GG L + A + + +K+ G+ LG AV+ + +T + R++ Sbjct: 263 --QAVLVGGYHGKWLDPRSINAATISRESMKKYGARLGAGAVLPIPENTCPLGETARVAR 320 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + E+ GQC PC G + + ++ +G Q ID + ++ GR C+ D A Sbjct: 321 WLAAETAGQCGPCFIGLPALADAIGQVERGGGQS-SIDNVRAYVNSVRGRGACSHPDGTA 379 Query: 399 WPIQGLIKNF 408 + + F Sbjct: 380 GFVTTALDAF 389 >gi|302560697|ref|ZP_07313039.1| oxidoreductase [Streptomyces griseoflavus Tu4000] gi|302478315|gb|EFL41408.1| oxidoreductase [Streptomyces griseoflavus Tu4000] Length = 523 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 LRGRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 46 LRGRGGAGFPFHKKLRSVAESAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA + V RES Q +++ A G N+ + V Sbjct: 106 LLCAEAMGARTLVVGV------TRESTQRSMEAALAE--RGLNNGRRSALRARVQRNPVR 157 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R G Y Sbjct: 158 MVTGAAASLIRSIDGGPAIPPGRKVSASKNGVGGAPTLLSNAETFAQLAIAARIGPERYG 217 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P +E + +++ + G V+ GG Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + AI+ + L +G LG A++ + + T + R++ + ES GQC Sbjct: 273 GKWIDAATVNEAIISRNSLDAVGGSLGAGAILPISQDTCPLGESLRVAQWLAEESAGQCG 332 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R +E ++ G ++ + +V++N++ R C+ D +A ++ +K F Sbjct: 333 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVARNVKRRGACSHPDGSAMFLESTVKAF 390 >gi|329934611|ref|ZP_08284652.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces griseoaurantiacus M045] gi|329305433|gb|EGG49289.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces griseoaurantiacus M045] Length = 543 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 91/360 (25%), Positives = 162/360 (45%), Gaps = 18/360 (5%) Query: 52 LRGRGGAGFSTGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEG 108 L+GRGGAGF K + + RP +VVN E EP KD ++ PH +++G Sbjct: 58 LKGRGGAGFPFHKKLRSVAEQAIRRGTRP-VVVVNGSEDEPACRKDTVLINRAPHLILDG 116 Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAG 168 ++ + A+GA + V RES + ++++ A G + + G + V Sbjct: 117 ALLVAEALGARTLVVGV------TRESTERSMEQALAE--RGLSDRRGAPIRARVQRNPV 168 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 + G +L+ S++G P + + G+ G PT ++N E+ A + R G Y Sbjct: 169 RMVTGAAASLIRSIDGGPAIPPGRKISASQSGVGGLPTLLSNAETFAQLAIAARIGPDRY 228 Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288 G + GT + ++SG V P +E + +++ + G V+ GG Sbjct: 229 RNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGY 283 Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 + A + AI+ + L +G LG A++ + + T + +++ + ES GQC Sbjct: 284 HGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPIRQETCPLGESLQVAKWLAEESAGQC 343 Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R ME ++ G ++ L +V+K ++ R C+ D +A ++ IK F Sbjct: 344 GPCYLGLPAAARGMEDILNG-GGPAALEALKQVAKAVKRRGACSHPDGSAMFLESTIKAF 402 >gi|239931336|ref|ZP_04688289.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672] Length = 536 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 LRGRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 58 LRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 117 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA + V RES Q +++ A L + + V Sbjct: 118 LLCAEAMGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 169 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R G Y Sbjct: 170 MVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFAQLAIAARIGPERYG 229 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P VE + +++ + G V+ GG Sbjct: 230 NTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 284 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + AI+ + L +G LG A++ + + T + ++ + ES GQC Sbjct: 285 GKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLMVAKWLAEESAGQCG 344 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R +E ++ G ++ + +V+KN++ R C+ D +A ++ +K F Sbjct: 345 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 402 >gi|291439710|ref|ZP_06579100.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672] gi|291342605|gb|EFE69561.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672] Length = 524 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 LRGRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 46 LRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA + V RES Q +++ A L + + V Sbjct: 106 LLCAEAMGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 157 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R G Y Sbjct: 158 MVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFAQLAIAARIGPERYG 217 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P VE + +++ + G V+ GG Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + AI+ + L +G LG A++ + + T + ++ + ES GQC Sbjct: 273 GKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLMVAKWLAEESAGQCG 332 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R +E ++ G ++ + +V+KN++ R C+ D +A ++ +K F Sbjct: 333 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 390 >gi|331663798|ref|ZP_08364708.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] gi|331059597|gb|EGI31574.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] Length = 213 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 3/193 (1%) Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 WY + + GTKL SG V P E T E++E + GG+R G A PG Sbjct: 3 WYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPG 61 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 G+ L + M+++ + + GS LGTA + +D +++ + L F+ ESCG Sbjct: 62 GAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCG 120 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLI 405 CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A P+Q I Sbjct: 121 WCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAI 180 Query: 406 KNFRPLIEERIDQ 418 K FR E I Q Sbjct: 181 KYFREEFEAGIKQ 193 >gi|256962026|ref|ZP_05566197.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] gi|256952522|gb|EEU69154.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] Length = 175 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 3/146 (2%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 +D + + + + I+NE+ + LRGRGGA + G KW + Y+V NADE E Sbjct: 31 FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q A+D +G Sbjct: 90 PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149 Query: 149 LGSN--SKLGYDVDIIVHHGAGAYIC 172 LG N G++ DI + GAGAYIC Sbjct: 150 LGENILGIEGFNYDITIISGAGAYIC 175 >gi|21234156|ref|NP_639733.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] gi|13620642|emb|CAC36681.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] Length = 525 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 94/372 (25%), Positives = 169/372 (45%), Gaps = 16/372 (4%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRD 96 G + + +A L+GRGGAGF K + + R +VVN ES+P KD Sbjct: 33 GGEQLAKLAEAINLKGRGGAGFPFHKKLRSVTEAAIKRGVRPVVVVNGSESDPSCRKDTV 92 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ PH +++G ++ + A+GA + V RES Q +++ A L SNS+ Sbjct: 93 LINRAPHLILDGALLVAEALGARTLVVGV------TRESTQRSMEAALAERGL-SNSRRS 145 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 146 A-LRASVQRNPVRMVTGSAASLIRSIDGGPAIPPGRKVSASQSGVGGAPTLLSNAETFAQ 204 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + R G Y G + GT + ++SG V P +E + +++ + G Sbjct: 205 LAIAARIGRERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGA 259 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 V+ GG + A + AI+ + L +G LG A++ + + T + ++ Sbjct: 260 PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGEALQV 319 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + + ES GQC PC G R +E ++ G ++ L +V++N++ R C+ D Sbjct: 320 AKWLAEESAGQCGPCYLGLPAAARGLEDILNG-GGPAALETLKQVARNVKRRGACSHPDG 378 Query: 397 AAWPIQGLIKNF 408 +A ++ +IK F Sbjct: 379 SAMFLESMIKVF 390 >gi|302551362|ref|ZP_07303704.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736] gi|302468980|gb|EFL32073.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736] Length = 524 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 L+GRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 46 LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA + V RES Q +++ A L + + V Sbjct: 106 LLCAEALGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 157 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R G Y Sbjct: 158 MVTGAAASLIRSIDGGPAVPPGRKVSASQNGVGGAPTLLSNAETFAQLAIAARIGPERYG 217 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P +E + +++ + G V+ GG Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + AI+ + L +G LG A++ + + T + R++ + ES GQC Sbjct: 273 GKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQDTCPLGESLRVAQWLAEESAGQCG 332 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R ME ++ G ++ L +V+KN++ R C+ D +A ++ IK F Sbjct: 333 PCYLGLPAAARGMEDILNG-GGPAALEALKQVAKNVKRRGACSHPDGSAMFLESTIKAF 390 >gi|284164323|ref|YP_003402602.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] gi|284013978|gb|ADB59929.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] Length = 565 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 104/398 (26%), Positives = 175/398 (43%), Gaps = 65/398 (16%) Query: 41 DWIINEVKASGLRGRGGAGFST----GMKWSFMPKVCS----------DRPHYLVVNADE 86 D ++ V+ GL GRG +S +W + + D P +VVN +E Sbjct: 170 DEALSRVRDVGLLGRGRGDWSVDDPVAEEWELAREAAAEGADEGDSEADEP-VVVVNGNE 228 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV---DEC 143 S+ DR ++ P +++G + + +GA +Y R RE + A +E Sbjct: 229 SDDRNATDRTLLEAAPGEVLDGALAVAELVGADDVVVYCNENDDRARERVHEAARNAEER 288 Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLY 202 +A L + + G +V + G YI GE T LE++EG + + RL+PP PA GLY Sbjct: 289 FAERL---DRESGPEVVV----GPDRYIAGEPTMALEAMEGNDRLEARLRPPSPAEHGLY 341 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGREN-NRGTKLFSISGHVNYPCTVEESM--- 258 G PT V+ ++A V RR F ++ + GT+LF+++G V+ TVE Sbjct: 342 GRPTIVHTPRTMAQV----RRALLAPDEFDADDADPGTRLFTVTGDVDAAATVELPTGGS 397 Query: 259 ------SITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 ++ + + C GG GG+ L+ P S P L Sbjct: 398 LADVRETVDLEGRFKMACVGGQFGGFTRSLSQSP---SAPAL-----------------E 437 Query: 312 GSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G+ LGT V+ +++ ++ R + F E+CG+C CREG+ + ++ + G Sbjct: 438 GAELGTEGVVELLNEDNCVLATAGRRANFAMEENCGRCVTCREGSQELTNMLRDIYDGQY 497 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 Q +I E+++ + +IC G A P ++ F Sbjct: 498 QDAKI---RELTRVMGETSICQFGRTAIRPAVTGMREF 532 >gi|46204507|ref|ZP_00049890.2| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 76 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 46/61 (75%), Positives = 53/61 (86%) Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGKKG PRLKP FPAN+GLYGCPT+VNNVESIAV TILRRG +W++G G +NN GTKL Sbjct: 1 MEGKKGMPRLKPTFPANMGLYGCPTSVNNVESIAVAGTILRRGGAWFAGLGAKNNTGTKL 60 Query: 242 F 242 F Sbjct: 61 F 61 >gi|290960411|ref|YP_003491593.1| oxidoreductase [Streptomyces scabiei 87.22] gi|260649937|emb|CBG73053.1| putative oxidoreductase [Streptomyces scabiei 87.22] Length = 537 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 163/359 (45%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 L+GRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 58 LKGRGGAGFPFHKKLRSVAESAIKRGIRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 117 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA I V RES + +++ A G +++ G + V Sbjct: 118 LLVAEALGARQLVIGV------TRESTERSMEAALAE--RGLSNRRGAAIRASVQRNPVR 169 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R G+ Y Sbjct: 170 MVTGAAGSLIRSIDGGPPIPPGRKTSASKSGVGGAPTLLSNAETFAQLAIGARIGSERYG 229 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P +E + +++ + G V+ GG Sbjct: 230 NTGLYDEPGTVMLTVSGAVARPMVIEAPTGVPLRYILQ-----LAGAPPVPQGVLTGGYH 284 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + A++ + L +G LG A++ + + T + +++ + ES GQC Sbjct: 285 GKWIDAATVNEAVVSRNSLDAVGGALGAGAILPISQDTCPLGESLQVAKWLAEESAGQCG 344 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R ME ++ G ++ L +V+KN++ R C+ D +A ++ IK F Sbjct: 345 PCYLGLPAAARGMEDILNG-GGPAALEALKQVAKNVKRRGACSHPDGSAMFLESTIKAF 402 >gi|86741278|ref|YP_481678.1| respiratory-chain NADH dehydrogenase domain-containing protein [Frankia sp. CcI3] gi|86568140|gb|ABD11949.1| NADH dehydrogenase subunit F [Frankia sp. CcI3] Length = 510 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 103/412 (25%), Positives = 161/412 (39%), Gaps = 63/412 (15%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPH----------------------- 78 ++ E+ SGL GRGGA F T K + + C D H Sbjct: 97 LLPEIHDSGLTGRGGAAFPTWRKLAASAEGTCLDGSHSGSAHRGSTHRGSQHRNAGHRAD 156 Query: 79 --------YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 +V NA E EP + KD ++ PH +++G +A+ A+GA AF+Y Sbjct: 157 RYRSSAHPVVVANAAEGEPESAKDVTLLTVAPHLVLDGLQLAAEAVGADDAFVY------ 210 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQP 189 L+ L G+D + + ++ GE +A++ +LEG +P Sbjct: 211 -----LKPGPAVTAVRRALAQRRAAGWDRFTVQIREAPETFVAGEASAVIAALEGGAARP 265 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R A G +G PT V N E++A + I R GASW+ G GT L +++G V Sbjct: 266 RAHWQPLAEAGFHGRPTLVQNAETLAHLALIARWGASWFRSVGTAEEPGTFLATVTGAVA 325 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGW-DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P VE L + + GG+ + + A GG S LP G M L Sbjct: 326 APGVVEVPFGTPLGTLAQ-----LAGGFTEQVGAFRVGGYSGAWLPGGPGATIAMSRAAL 380 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK- 367 G+ GT V V+ + R+ + ++ GQC PC G + + + + Sbjct: 381 APWGAAPGTGVVAVLPARGCGLVETARIVGYLAAQNAGQCGPCVSGLPQLADAVAGMART 440 Query: 368 -----------GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 G + I L ++ + GR C D AA + ++ F Sbjct: 441 DGGSGGPVQGAGDPGQSAIRAL-RLAALVAGRGACHHPDGAARLVHSALRTF 491 >gi|238060461|ref|ZP_04605170.1| oxidoreductase [Micromonospora sp. ATCC 39149] gi|237882272|gb|EEP71100.1| oxidoreductase [Micromonospora sp. ATCC 39149] Length = 382 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/367 (24%), Positives = 158/367 (43%), Gaps = 42/367 (11%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRH 100 ++ +A L+G+GGAGF K + + C D +VVNA E EP + KD+ ++ Sbjct: 46 LLRLAEAIQLKGKGGAGFPFARKLRAVLESCERQDASAIVVVNATEGEPASWKDKVLLAR 105 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +++G + ++A+ A I V + + R SL A+ E ++ Sbjct: 106 APHLILDGAALVAYALDADEIVIGVADDDV-GRPSLTEALQE----------RRMPVPTS 154 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 ++ +I GE AL+ + G P ++ G+ G PT ++N E+ A + Sbjct: 155 MVTVPDR--FISGEGGALVNGINGLPHIPPGTKKRSSDSGVNGLPTLLSNAETYAQLAVA 212 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE---------KHCG 271 R G Y+ G ++ GT L +++G P VE + +++E G Sbjct: 213 ARLGPYEYAALGTDDEPGTLLLTVTGAAKRPAVVECAAGTPLRDILELCEVPDGPGVLMG 272 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G G W + A + A + GL +G LG ++ + R T + Sbjct: 273 GYHGKW---------------ITAEAAQRAEVSRKGLTAVGGTLGAGIIVPLGRDTCPLG 317 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 ++ + ES GQC PC+ G + R ++ V G A I+++ + +++GR C Sbjct: 318 EAAQVVRYLAGESAGQCGPCKMGLPDLARAVDLAVSGSAP---IEIVRAAAGDVKGRGAC 374 Query: 392 ALGDAAA 398 + D A Sbjct: 375 SHPDGTA 381 >gi|29832029|ref|NP_826663.1| oxidoreductase [Streptomyces avermitilis MA-4680] gi|29609147|dbj|BAC73198.1| putative oxidoreductase [Streptomyces avermitilis MA-4680] Length = 524 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 162/359 (45%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 L+GRGGAGF K + + R +VVN E EP KD ++ PH +++G Sbjct: 46 LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++ + A+GA I V E + S++AA+ E G +++ G + V Sbjct: 106 LLVAEALGARTLVIGVTRESTQR--SMEAALSE------RGLSNRRGAAIRARVQRNPIR 157 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + G +L+ S++G P + + G+ G PT ++N E+ A + R GA Y Sbjct: 158 MVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFAQLAIAARIGAERYC 217 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT + ++SG V P +E + +++ + G V+ GG Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVLEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A + AI+ + L +G LG A++ + + T + R++ + ES GQC Sbjct: 273 GKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGESLRVAQWLADESAGQCG 332 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC G R M ++ G ++ L +V+K ++ R C+ D +A ++ +K F Sbjct: 333 PCYLGLPAAARGMADILNG-GGPAALEALKQVAKAVKRRGACSHPDGSAMFLESTVKAF 390 >gi|307942123|ref|ZP_07657474.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4] gi|307774409|gb|EFO33619.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4] Length = 77 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 45/62 (72%), Positives = 54/62 (87%) Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M RVMER+VKG + EID+L++V+K +EG TICALGDAAAWPIQGLI+NFRPLIE+RID Sbjct: 1 MWRVMERMVKGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIRNFRPLIEQRID 60 Query: 418 QY 419 Y Sbjct: 61 DY 62 >gi|254383432|ref|ZP_04998783.1| oxidoreductase [Streptomyces sp. Mg1] gi|194342328|gb|EDX23294.1| oxidoreductase [Streptomyces sp. Mg1] Length = 481 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 159/370 (42%), Gaps = 27/370 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIM 98 D +I+ +A LRGRGGAGF K + + + +VVNA E EP KD ++ Sbjct: 45 DDLIDLAEAIDLRGRGGAGFPFHRKLRAVMRSARAKEGRSAVVVNASEGEPSCLKDTALL 104 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H PH +++G +A+ A+GA + V R+ ++ +V + A + G Sbjct: 105 LHVPHVVLDGAQLAADALGAEDVVVGV------TRDDVERSVRDAIA--------ERGPG 150 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + V ++ GE T+++ +EG P + + GL G PT ++N E+ A + Sbjct: 151 TRLRVSRLPERFVTGEGTSMINGIEGNPAVPNGQKVRTSERGLTGLPTLLSNTETYAQLA 210 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 R GA+ Y+ G GT + ++SG T E S T + + CG G Sbjct: 211 IAARLGAAGYNSVGLPAEPGTLMLTVSG-----ATAVEIPSGTSLAYVLELCGSSPG--- 262 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 V+ GG L A++ L + LG AV+ + T + R++ Sbjct: 263 --QGVLVGGYHGRWLTPEDASQALLSRQSLAAFDAVLGAGAVLPLPEDTCPAGEVARVTR 320 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + E+ GQC PC G + +E++V G + + + + + GR C+ D + Sbjct: 321 WMADETAGQCGPCVRGLPSLATAVEQMVAG-GGRATFEAVEARMRAVRGRGACSHPDGTS 379 Query: 399 WPIQGLIKNF 408 + + F Sbjct: 380 GFVASALNVF 389 >gi|237800540|ref|ZP_04589001.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023400|gb|EGI03457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 148 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/96 (50%), Positives = 66/96 (68%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 + ++ D I+ VK SGL+GRGGAGF TG+KW MPK S YL+ NADE EP T KD Sbjct: 50 LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 R +M PH LIEG +I++ A+ A+ +I++RGE++ Sbjct: 110 RMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYV 145 >gi|111223357|ref|YP_714151.1| putative oxidoreductase [Frankia alni ACN14a] gi|111150889|emb|CAJ62594.1| Putative oxidoreductase [Frankia alni ACN14a] Length = 347 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 133/292 (45%), Gaps = 19/292 (6%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NA E EP + KD ++ PH +++G +A+ A+GA AF+YV+ QA Sbjct: 4 VVANAAEGEPESAKDATLLAVAPHLVLDGVQLAAEAVGAADAFVYVKAGSAAAAAVRQAV 63 Query: 140 VDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + A G+D I V ++ GE +A++ +L+G +PR A+ Sbjct: 64 AERRAA----------GWDRCGIEVREAPATFLAGEASAVVAALDGAAARPRAHWRPLAD 113 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL G PT V+NVE++A + TI R GA W+ G + GT L +++G V P VE Sbjct: 114 AGLRGRPTLVHNVETLAHLATIARWGAPWFRSVGTADEPGTLLVTVTGAVAGPGVVEVPC 173 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 L+ G + + + AV GG + LP M +GL G+ G Sbjct: 174 GTPLGALVGSRGGAV----EPVGAVRVGGYAGTWLPGAVAAAVPMSREGLASWGATPGPG 229 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 V V+ + R+ + ++ GQC PC G + + R V G+A Sbjct: 230 IVSVLPAHACGLAETARIVAYLAGQNAGQCGPCVSG----LPQLARSVAGVA 277 >gi|260653770|dbj|BAI44425.1| putative NADH dehydrogenase I, F subunit [Monochamus alternatus] Length = 77 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 49/76 (64%), Positives = 57/76 (75%) Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 NLLA+IPGGSSVP +P MD+D L+ SGLGTAAVIVMD+ T+II AI +LS Sbjct: 1 NLLAIIPGGSSVPLIPKSICDTIEMDFDSLRTAQSGLGTAAVIVMDKLTEIIAAIEKLSH 60 Query: 339 FYKHESCGQCTPCREG 354 FY +E CGQCTPCREG Sbjct: 61 FYMYEFCGQCTPCREG 76 >gi|284172809|ref|YP_003406191.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] gi|284017569|gb|ADB63518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] Length = 507 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 48/370 (12%) Query: 53 RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 RGRG A + + +D +V NA+E+ D ++ P +++G Sbjct: 155 RGRGDAAADDPVTDVWETARDADGDPVVVANANETRDEQRADEVLLGGAPIAVLDGIAAV 214 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 + +GA A +Y+ E L+ A+D +G L +L G Y Sbjct: 215 AEYVGADDAVVYLNEEDSHLHRHLREAIDAV--AGELPIVPQL--------VAGPDEYRA 264 Query: 173 GEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 G TA LE++EG + +PRL+PP PA GLYG PT ++ + A V +R ++ + Sbjct: 265 GAPTAALEAMEGADRIEPRLQPPSPAEYGLYGRPTVIHTPRTFAQVRRAIRDSDAFDADA 324 Query: 232 GRENNRGTKLFSISGHVNYPCTVE----ESMSITFDEL-----IEKHC-GGIRGGWDNLL 281 + GT+L +++G V P T+E S+S+ D + + C GG+ GG L Sbjct: 325 ---ADPGTRLITVAGDVADPATIELPSDSSLSVVRDAVELTGSFKMACVGGVLGGITRSL 381 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFY 340 V P S+ +GLGT V+ +++ ++ + + F Sbjct: 382 DVAPTAQSL--------------------AAAGLGTDGVVELLNDDRCVVADVGERARFA 421 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 E+ G+C P REGT + ++ + +G E D + E+ + + + C +G A P Sbjct: 422 STENSGRCVPGREGTKQLTELLRDVYQG---SLEADTIRELGRVMARSSNCQIGAHAPRP 478 Query: 401 IQGLIKNFRP 410 + I F P Sbjct: 479 VTTAIDEFEP 488 >gi|302540307|ref|ZP_07292649.1| putative oxidoreductase [Streptomyces hygroscopicus ATCC 53653] gi|302457925|gb|EFL21018.1| putative oxidoreductase [Streptomyces himastatinicus ATCC 53653] Length = 497 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 26/370 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY--LVVNADESEPGTCKDRDIM 98 D ++ + LRGRGGAGF K + + + +VVN E EP KD ++ Sbjct: 37 DELVALAENIDLRGRGGAGFPFAKKVTAVVEAAGRAGGRCNVVVNGSEGEPSCLKDTALL 96 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H PH +I+G +A+ AIGA I + ESL AA+ E SG Sbjct: 97 LHTPHLVIDGATLAAEAIGAEEVVIACHRPDV--EESLNAAIAERGPSG----------- 143 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 V + V ++ GE A++ + G P + + GL G PT ++N E+ A + Sbjct: 144 VPVEVSVTPDRFVAGEGGAVINGISGAPAIPNGRKIRSSENGLGGLPTLLSNTETYAQLA 203 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 R GA Y G GT L ++ G Y + +T+ + + CG G Sbjct: 204 VAARMGALPYRSVGLPTEPGTTLLTVGG--KYVMETPTGVPLTY---VLELCGLTPG--- 255 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 V+ GG L + A + + +K+ G+ LG AV+ + T + R++ Sbjct: 256 --QGVLVGGYHGKWLDPKSIGAATISRESMKKYGARLGAGAVLPIPEDTCPLGETARVAR 313 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + E+ GQC PC G + + ++ +G Q ID + ++ R C+ D A Sbjct: 314 WLAAETAGQCGPCFIGLPALADAIGQVERGGGQS-SIDNVRAYINSVRKRGACSHPDGTA 372 Query: 399 WPIQGLIKNF 408 + + F Sbjct: 373 GFVTTALDAF 382 >gi|323168547|gb|EFZ54227.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella sonnei 53G] gi|323171965|gb|EFZ57609.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia coli LT-68] Length = 196 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 3/176 (1%) Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 SG V P E T E++E + GG+R G A PGG+ L + M Sbjct: 3 FSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHLD-LPM 60 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 +++ + + GS LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ Sbjct: 61 EFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILR 120 Query: 364 RLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L +G Q +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 121 ALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 176 >gi|168038274|ref|XP_001771626.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677065|gb|EDQ63540.1| predicted protein [Physcomitrella patens subsp. patens] Length = 195 Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/78 (61%), Positives = 61/78 (78%), Gaps = 3/78 (3%) Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 + +GL G+N+ G+ +D+++HHGA AYICGE+T LESLEGK+ +PRLKPPFPAN GLY Sbjct: 39 WKTGLPGNNACGSGHALDVLIHHGACAYICGEDTTPLESLEGKQNKPRLKPPFPANAGLY 98 Query: 203 GCPTTVNNVESIAVVPTI 220 G PTTV NV AV P+I Sbjct: 99 GFPTTVTNVA--AVEPSI 114 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + L E++ E ICAL DAA WP+QGLI++F Sbjct: 124 LSLKQEITVKNERSAICALIDAAVWPVQGLIRHF 157 >gi|167946814|ref|ZP_02533888.1| NADH dehydrogenase (ubiquinone), F subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 109 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 3/93 (3%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L SRG ++ + KIL++ + +I EVK SGLRGRGGAGF TG+KWSF+ + + Sbjct: 18 LEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKWSFITRNAPGQ- 76 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110 Y+V N+DE EPGT KDRDI+R+ PH LIEG + Sbjct: 77 KYVVCNSDEGEPGTFKDRDILRYNPHQLIEGMI 109 >gi|110589186|gb|ABG77102.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 115 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 3/93 (3%) Query: 20 LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L SRG ++ + KIL++ + +I EVK SGLRGRGGAGF TG+KWSF+ + + Sbjct: 24 LEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKWSFITRNAPGQ- 82 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110 Y+V N+DE EPGT KDRDI+R+ PH LIEG + Sbjct: 83 KYVVCNSDEGEPGTFKDRDILRYNPHQLIEGMI 115 >gi|268323919|emb|CBH37507.1| putative Fe-only hydrogenase, N-terminus [uncultured archaeon] Length = 117 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 1/98 (1%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + G + +++K L+ II+EVK SGL GRGGA F TG+KW F K S+ Y+V N Sbjct: 21 IKTGGYSSLEKALQMQPHDIIDEVKKSGLVGRGGAAFPTGLKWEFTRK-ESEELKYVVCN 79 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 ADE EPGT KDR I+++ PH L+E +IA +AIGA A Sbjct: 80 ADEGEPGTFKDRVILKNNPHLLVESMIIAGYAIGAKEA 117 >gi|73982775|ref|XP_864277.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 3 [Canis familiaris] Length = 120 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 45/70 (64%), Positives = 50/70 (71%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPK 71 TG+KWSFM K Sbjct: 95 TGLKWSFMNK 104 >gi|256396547|ref|YP_003118111.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Catenulispora acidiphila DSM 44928] gi|256362773|gb|ACU76270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Catenulispora acidiphila DSM 44928] Length = 418 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 114/391 (29%), Positives = 164/391 (41%), Gaps = 51/391 (13%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D ++N +KA+GLRGRGGAGF K + + P +V N E EPG+ KDR +MR Sbjct: 40 DLLVNRIKAAGLRGRGGAGFPAAAKLLAV-RAAGSVP-VVVANGGEGEPGSVKDRWLMRA 97 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +++G + A+ A ++YV + E A E Y V Sbjct: 98 RPHLVLDGMLRAADITRAARCYVYVADDEAAESMRRALAEREPY--------------VP 143 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + A Y+ GEETA++ + G P KPP P G+ G PT V NVE++A + + Sbjct: 144 TQIVRVAHTYVAGEETAVVRRINGGPALPTAKPPRPFESGVDGVPTLVANVETLARIALL 203 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 R + L ++SG P VE + + L + D L Sbjct: 204 ----------AARPQTPDSLLLTVSGPGLEPELVEAPVGTSLQALAYRA--------DRL 245 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLK---------EMGSGLGTAAVIVMDRSTDIIK 331 P + G M G I+D GL+ GS LG AV + + Sbjct: 246 --------GTPGVLMGGMFGGILDPRGLRTELEAAALTAAGSALGCGAVHFLAPGECPVA 297 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 F ES QC C GT + R M V G A+ ++ L + S+++ R C Sbjct: 298 LAAEGLAFLADESSRQCGVCVTGTAALARTMASAVHGTAEPDDLARLSKWSQSLRRRGAC 357 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 L DAAA L+++F PL E I+ C Sbjct: 358 GLLDAAANLAASLLRSFGPLTEAHIEGRSPC 388 >gi|297162339|gb|ADI12051.1| oxidoreductase [Streptomyces bingchenggensis BCW-1] Length = 503 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 158/370 (42%), Gaps = 26/370 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIM 98 D ++ + LRGRGGAGF K + + + R +VVN E EP KD ++ Sbjct: 47 DELVALAENIDLRGRGGAGFPFAKKVTAVIESAGRRDGRCAVVVNGSEGEPSCLKDTALL 106 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H PH +I+G V+A+ A+GA I V + ESL AA+ E G G ++ Sbjct: 107 LHTPHLVIDGAVLAATAMGADDVAIAVHRPDV--EESLSAAIAE---RGPSGPRVQVSVT 161 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D ++ GE A++ + G P + ++ GL G PT ++N E+ A + Sbjct: 162 DD--------RFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLAGLPTLLSNTETFAQLA 213 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 R GA + G GT L ++ G +E + ++E CG G Sbjct: 214 VAARMGALPFRSVGLPTEPGTTLLTVGGKF----VMETPFGVPLSYVLEL-CGLTPG--- 265 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 V+ GG L + + + +++ + LG AV+ + +T + R++ Sbjct: 266 --QGVLVGGYHGKWLLPDSLASVNISRESMEKYNARLGAGAVLPIPENTCPVGETARVAR 323 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + E+ QC PC G + + ++ +G Q +D + ++++ R C+ D A Sbjct: 324 WLAGETANQCGPCFIGLPALADAIGQVERGGGQA-ALDTVSAYIESVKRRGACSHPDGTA 382 Query: 399 WPIQGLIKNF 408 + + F Sbjct: 383 GFVTTALDAF 392 >gi|239941073|ref|ZP_04693010.1| oxidoreductase [Streptomyces roseosporus NRRL 15998] gi|239987553|ref|ZP_04708217.1| oxidoreductase [Streptomyces roseosporus NRRL 11379] gi|291444513|ref|ZP_06583903.1| oxidoreductase [Streptomyces roseosporus NRRL 15998] gi|291347460|gb|EFE74364.1| oxidoreductase [Streptomyces roseosporus NRRL 15998] Length = 525 Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 91/349 (26%), Positives = 152/349 (43%), Gaps = 16/349 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 LRGRGGAGF G K + K R +V+N E EP KD ++ PH +++G Sbjct: 58 LRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDTVLLNRAPHLILDGA 117 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++A+ A+GA + V R S + +V A G + + G + V Sbjct: 118 LLAAEALGARTLVVAV------TRNSTEISVRAALAE--RGLSDRRGQQLRARVVRTPER 169 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + GE ++++ + G P + A G+ G PT ++N E+ A + R G Y Sbjct: 170 MVSGEASSVIRAANGGPALPPGRRERAAETGVGGAPTLLSNAETYAQLAVAARIGPRRYG 229 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G N GT L ++SG V P VE + ++E + G V+ GG Sbjct: 230 HTGLPNEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLE-----MAGAPPLPQGVLTGGYH 284 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + A A++ + L +G LG A++ + T + R++ + E+ GQC Sbjct: 285 GNWIDAVSSHNAVVSRESLATVGGALGAGAILPIGPDTCPLGESLRIANWLAAETAGQCG 344 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 PC+ G + ++ G ++ L EV++ ++GR C D +A Sbjct: 345 PCKLGLPAAAGGLSDVLNG-GGPAALEALREVTQAVKGRGACKHPDGSA 392 >gi|325303370|tpg|DAA34498.1| TPA_inf: NADH dehydrogenase I subunit F [Amblyomma variegatum] Length = 122 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 45/76 (59%), Positives = 53/76 (69%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF NLYG L +MSRG W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 47 LKDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGPDWIIDEIKKSGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSDRP 77 +G+KWSFM K RP Sbjct: 107 SGLKWSFMNKPSDGRP 122 >gi|297199617|ref|ZP_06917014.1| oxidoreductase [Streptomyces sviceus ATCC 29083] gi|197713457|gb|EDY57491.1| oxidoreductase [Streptomyces sviceus ATCC 29083] Length = 505 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 16/372 (4%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRD 96 G + + +A L+GRGGAGF K + + R +VVN E EP KD Sbjct: 13 GGEQLAKLSEAINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTV 72 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ PH +++G ++A+ A+GA I V RES Q +++ A L + + Sbjct: 73 LINRAPHLILDGALLAAEALGARTLVIGV------TRESTQRSMEAALAERGLSNGRRSA 126 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 127 LRAR--VQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFAQ 184 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + R G Y G + GT + ++SG V P +E + +++ + G Sbjct: 185 LAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGA 239 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 V+ GG + A + AI+ + L +G LG A++ + + T + R+ Sbjct: 240 PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQETCPLGESLRV 299 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 + + ES GQC PC G R ME ++ G ++ L +V+KN++ R C+ D Sbjct: 300 AQWLAEESAGQCGPCYLGLPAAARGMEDILNG-GGPAALEALKQVAKNVKRRGACSHPDG 358 Query: 397 AAWPIQGLIKNF 408 +A ++ IK F Sbjct: 359 SAMFLESTIKAF 370 >gi|330469511|ref|YP_004407254.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Verrucosispora maris AB-18-032] gi|328812482|gb|AEB46654.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Verrucosispora maris AB-18-032] Length = 488 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 42/355 (11%) Query: 52 LRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 L+G+GGAGF K + + C D P +VVNA E EP + KD+ I+ PH +++G Sbjct: 57 LKGKGGAGFPFARKLRAVLESCERQDLPPVVVVNATEGEPASWKDKVILTRAPHLILDGA 116 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 +A+FA+ A + V + I R+SL A++E + V + H Sbjct: 117 ALAAFALDAEEIVLCVADDLI-GRDSLMEALEE--------RRMPVPTSVVTVPHR---- 163 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 +I GE AL+ + G P ++ G+ PT ++N E+ + + R G Y+ Sbjct: 164 FISGEGGALVNGINGLPHIPPGTKKRSSDSGVNNLPTLLSNAETYSQMAIAARLGPYEYA 223 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK---------HCGGIRGGWDNL 280 G ++ GT L SI+G VE + E++E GG G W Sbjct: 224 ALGTDDEPGTVLLSITGAAKRHAVVECAAGTPLREILELCEVPEGPGILMGGYHGKWITW 283 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 A A + GL +G LG ++ + T + ++ + Sbjct: 284 EAA---------------NKAEVSRKGLAAVGGTLGAGIIVPLANDTCPLGEAAQVVRYL 328 Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ES GQC PC+ G + R ++ V G A ++++ + +++GR C+ D Sbjct: 329 AGESAGQCGPCKRGLPDLARAVDLAVSGSAP---VEVVRAAAGDVKGRGACSHPD 380 >gi|258651844|ref|YP_003201000.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nakamurella multipartita DSM 44233] gi|258555069|gb|ACV78011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nakamurella multipartita DSM 44233] Length = 426 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 142/330 (43%), Gaps = 23/330 (6%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNAD 85 H V + + + V A+GL+GRGGAGF T K + + + RP +V N Sbjct: 32 HHRRVGALPHRSATELAAMVDAAGLQGRGGAGFPTARKIAAVAAAVGKTRRPAVVVANCC 91 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +P KDR ++ PH +I+G V A+ A+ A + V R++L A+ E Sbjct: 92 EGDPTAAKDRVLIDRSPHLVIDGAVAAARAVRADRVVLAVH-HGSPARQTLAVALTE--- 147 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 + V I V Y+ E TALL L+ +P + P G+ G P Sbjct: 148 --------RPDERVRIEVVAVPARYLASEATALLRFLDTGDARPAGRLPI-WEKGVEGRP 198 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T V+N E+ A + I R GA W+ G GT L ++ G V P +E + ++ Sbjct: 199 TLVDNAETFAHLALIARFGAGWFGAVGHPAEPGTMLLTLGGAVPRPGVIEVPTGASVRDV 258 Query: 266 IEKHCGGIR-GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 + C G R GW A+I GG + + + G + LKE+G G ++ V+ Sbjct: 259 LA--CAGSRPTGW----ALI-GGLAGRWMNLDRSAGIGLSTPELKEIGMTRGVGSLTVLP 311 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 +++ R+ QC PC G Sbjct: 312 PGACLLQETTRIVTHQAQAGARQCGPCMFG 341 >gi|119718646|ref|YP_925611.1| respiratory-chain NADH dehydrogenase domain-containing protein [Nocardioides sp. JS614] gi|119539307|gb|ABL83924.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Nocardioides sp. JS614] Length = 412 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 93/351 (26%), Positives = 140/351 (39%), Gaps = 47/351 (13%) Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 GRGGA F K +P + ++VN ESEP + KDR +M PH +++G + + Sbjct: 52 GRGGAAFPVATKLLAVPTGSRTQ---VLVNGSESEPASRKDRTLMTLTPHLVLDGALAVA 108 Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173 A+ I V SL+ A+DE + + VD+ AG ++ G Sbjct: 109 RALRTRHVTIAVHDAA--ALASLRTALDE------RARDEPIHERVDL--RRTAGRFVSG 158 Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233 E ALL L+G P + P++ GL G PT +NVE+ A V ++ GA+ + G Sbjct: 159 EVRALLRGLDGGPAVPPSRRTLPSDSGLRGAPTFASNVETFAQVALLVSLGATEFGAVGN 218 Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH-----CGGIRGGW----DNLLAVI 284 GT L ++ G VE + D L+ GG G W D L A Sbjct: 219 PEEPGTTLLTLLGDTRTQGVVEVPTDLPLDALLPGAGGPVLVGGYHGRWVRDVDGLAAAR 278 Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344 P GL+ G L V + R + + ++ + +S Sbjct: 279 P---------------------GLRAAGLPLNAGVVARLPREVCALAEVTAVTRWLAAQS 317 Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 GQC PC GT + + L+ G R + + + GR CA D Sbjct: 318 AGQCGPCLYGTAALAHDVGELLHG----RAAPAVEARLRGLVGRGACAHPD 364 >gi|291334210|gb|ADD93877.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S08-C1340] Length = 92 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/79 (53%), Positives = 56/79 (70%) Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AVIPGGSSVP + + MDY+ L ++G+ LG+ +IVMD ST ++ + R+S FY Sbjct: 13 AVIPGGSSVPVVKGEDIMDIPMDYESLMKIGTMLGSGGIIVMDESTCMVSVLERISRFYY 72 Query: 342 HESCGQCTPCREGTGWMMR 360 ESCGQCTPCREGTGW+ + Sbjct: 73 AESCGQCTPCREGTGWLYK 91 >gi|110667102|ref|YP_656913.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM 16790] gi|109624849|emb|CAJ51258.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM 16790] Length = 502 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 156/367 (42%), Gaps = 44/367 (11%) Query: 53 RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 RG G A + + ++M ++ +V+NA S PG D ++ P T+++G V Sbjct: 155 RGWGDACHDSPLTKTWMDADDAEGEAAIVINA-HSNPG---DSLLLSSVPFTILDGAVSL 210 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 + + A I+ E+ + A+D + S + +D++ G Y Sbjct: 211 AQTVDASEIVIFASIADESTIETARTAIDR------YPNESSIA--IDLVT--GPAEYRA 260 Query: 173 GEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 E T LE++EG + + RL+PP P +VGLYG PT ++ ++A + LR + Sbjct: 261 AEPTMALEAIEGNHRLEARLRPPGPESVGLYGRPTLIHTARTLAHLAVSLREDSI----- 315 Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 +++ T++ SI G V +E + T +E C A G Sbjct: 316 --DSHPSTRIMSIEGDVTDRTIIEVPETTT----LETVCAA---------ADTTDGIKAA 360 Query: 292 CLPAGQMRGAIMDYDGLKE----MGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCG 346 C+ G+ G D D + + + LGT ++ V+ +++ + + F E+CG Sbjct: 361 CV-GGRFGGLAADLDISVDPETLIDANLGTEGIVHVLSEDRCVVEFVGERAQFAAEENCG 419 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 +C PCREGT + ++ L G Q ID L V +IC G A P Q + Sbjct: 420 RCVPCREGTTQLAELLRSLYDGTYQPEAIDELIRVMTTT---SICEFGVNAGRPTQTALN 476 Query: 407 NFRPLIE 413 F E Sbjct: 477 AFESEFE 483 >gi|409554|gb|AAA53584.1| NADH ubiquinone oxidoreductase subunit [Escherichia coli str. K-12 substr. W3110] Length = 112 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 43/67 (64%), Positives = 50/67 (74%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D IIN+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR +M Sbjct: 46 DEIINQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 105 Query: 101 EPHTLIE 107 PH L+E Sbjct: 106 LPHLLVE 112 >gi|292494173|ref|YP_003533316.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2] gi|291369052|gb|ADE01282.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2] Length = 479 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 150/359 (41%), Gaps = 67/359 (18%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE-----RE 134 +VVNA++++ DR ++ P ++++G + +G A I+V E E RE Sbjct: 155 VVVNANDADDRQRADRTLLAGSPMSVLDGVAAVAEYLGTTEAVIHV-AETDTELQAHLRE 213 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKP 193 ++ AA DE ++ + G Y GE TA LE++EG + +PRL+P Sbjct: 214 AIDAAADELPVVPVVVT--------------GPDEYRAGEPTAALEAIEGVDRTEPRLQP 259 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P PA GLYG PT ++ + A V R + G R+ T+L +++G V P T Sbjct: 260 PTPAEYGLYGRPTVIHTPRTFARV----RLALADPEGTDRDAASTTRLLTVTGDVAAPAT 315 Query: 254 VE---------ESMSITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +E ++ + + C GG+ GG L V Sbjct: 316 IEVGSDARLSTARNAVELEGSFKMACVGGVFGGLTRTLDV-------------------- 355 Query: 304 DYDGLKEMGSGLGTAAVIVM--DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + + +GLGT V+ + D + A R + F + G+C P REGT + + Sbjct: 356 ESTAAELTAAGLGTEGVVELLNDERCAVATAGER-ARFASEANSGRCVPGREGTVQLTEL 414 Query: 362 MERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + + +G A+ RE+ + S N C LG A P+ + F E D Sbjct: 415 LRAVYRGSFDRAKIRELGRVMSRSSN------CLLGAHAPRPVLTAMDEFESSFEAHAD 467 >gi|55376869|ref|YP_134720.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui ATCC 43049] gi|55229594|gb|AAV45014.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui ATCC 43049] Length = 507 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 90/352 (25%), Positives = 147/352 (41%), Gaps = 48/352 (13%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +V NA+++ D ++ P +++G + + A A +YV + L+ A Sbjct: 182 VVCNANDASDLPTGDDTLLSGAPMAVLDGIAAVAEYVDAGDAVVYVNESQTDVQADLREA 241 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPAN 198 +D A+ L +L G + GE TA LE+LEG + +PRL+PP PA Sbjct: 242 ID--AAADTLPVVPQL--------VAGPDEFRAGEPTAALEALEGADRIEPRLQPPSPAK 291 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GLYG PT V+ + A V + S + + GT++ +++G V TVE Sbjct: 292 RGLYGRPTVVHTPRTFAQVQQAVADPGSVDADAA---DPGTRIVAVAGDVADSATVELRS 348 Query: 259 S---------ITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 S + D + C GG+ GG L + P S +R A Sbjct: 349 SASLAAVRKAVEMDGSFKMACVGGVLGGVTRSLDMAPTAQS--------LRAA------- 393 Query: 309 KEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 GLGT V+ + D ++ + + + F E+ G+C P REGT + ++ + Sbjct: 394 -----GLGTNGVVELFDTGRCTVETVGKRARFASMENSGRCVPGREGTKQLAELLRDIYD 448 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 G E D + E+S+ + + C G A P+ I F P D + Sbjct: 449 G---SFENDKIRELSRVMRQSSNCQTGAHAPRPVTTAIDEFEPEFRAHTDGH 497 >gi|313127332|ref|YP_004037602.1| NADH dehydrogenase subunit f [Halogeometricum borinquense DSM 11551] gi|312293697|gb|ADQ68157.1| NADH dehydrogenase subunit F [Halogeometricum borinquense DSM 11551] Length = 513 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 94/393 (23%), Positives = 162/393 (41%), Gaps = 64/393 (16%) Query: 41 DWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + + E+ GL RGRG A + + +D LVVNA++++ D ++ Sbjct: 147 ESVCTEIHRIGLLGRGRGDARADRPVAEGWATARKTDGDTVLVVNANDADERNRTDSTLV 206 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVR-GEFIRERESLQAAVDECYASGLLGSNSKLGY 157 + +++ + + + A +Y + G ER S A S + Y Sbjct: 207 EGDAGGVVDAAMAVAHLVEAEDVIMYAQTGSMAAERLSAAA------------SRYRDEY 254 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V G YI GE T LESLEG + + RL+PP P GLYG PT ++ ++ Sbjct: 255 GDAPQVAVGPERYIAGEPTMALESLEGNDRLEARLRPPGPETHGLYGRPTVIHTPRTLLQ 314 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-------------SITFD 263 V + R + + + + GT++ +++G V+ P TVE + + T Sbjct: 315 VREAILRPEEFDAD---DADPGTRVVTVTGDVDSPATVELTTGAPLRAAAAAVDRTETKM 371 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 ++ GG+ D+ L S P L G+ LGT V+ + Sbjct: 372 AIVGGQFGGVTRHLDHTL-------SAPAL-----------------SGANLGTEGVVEL 407 Query: 324 ---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 DR + + + F E+CG+C PCREGT + ++ + G + D L E Sbjct: 408 FGDDRCA--LATVGSRARFASEENCGRCVPCREGTTQLTDLLRDIYAG---DYDDDTLRE 462 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 +++ + + C G +AA ++ + F E Sbjct: 463 LTRTMRNTSTCDFGRSAARTVETAMAAFEAEFE 495 >gi|269125013|ref|YP_003298383.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183] gi|268309971|gb|ACY96345.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183] Length = 505 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 161/380 (42%), Gaps = 52/380 (13%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP----------------------H 78 + ++ +A +RGRGGA F K + K RP Sbjct: 42 EELLKITEAVDIRGRGGAAFPFARKLMAVAKQVG-RPGDVDDFLLPGEEDDHRGRRQKRA 100 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 +VVN E EPG+ KD+ ++ PH +++G IA+ A+G I + E S++A Sbjct: 101 VVVVNGSEGEPGSKKDKVLLTRNPHLVLDGAQIAATALGTRDIVIAIEDET--AARSMRA 158 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ E ++ +V + +I GE A++ ++ G+ P + A Sbjct: 159 AIVE----------RRMPAEVVRLPER----FISGESGAVIRAINGETPIPPGRKVRAAE 204 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 G+ G PT ++N E+ A + ++ G Y+ G ++ GT L ++ G C + + Sbjct: 205 SGVDGRPTLLSNTETFAQLAVLVSLGPDLYASVGTDSEPGTTLLTVGGTTVVECPLGTPL 264 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 + F + G++ G V+ GG + R AI+ G + +G LG Sbjct: 265 ASVFAQC------GVQPGQ----GVLVGGYHGEWITPEAARTAIVSRAGFQAVGGSLGAG 314 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 ++ + T ++ + R++ + +S GQC PCR G + R +E LV G +L+ Sbjct: 315 IILPLPEGTCPLREVARIASYMAGQSAGQCGPCRLGLPDLYRSLEALVDGSGSP---ELV 371 Query: 379 YEVSKNIEGRTICALGDAAA 398 + GR C+ D A Sbjct: 372 RRAAGIGRGRGACSHPDGTA 391 >gi|119718053|ref|YP_925018.1| respiratory-chain NADH dehydrogenase domain-containing protein [Nocardioides sp. JS614] gi|119538714|gb|ABL83331.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614] Length = 412 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 87/367 (23%), Positives = 151/367 (41%), Gaps = 50/367 (13%) Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPH-----YLVVNADESEPGTCKDRDIMRHEPHTLIEG 108 GRGGA F +K + +DR +VVN E EP + KD + PH +++G Sbjct: 59 GRGGAAFPFEVKL----RTAADRSRQGRRPVVVVNLSEGEPASAKDSALALTRPHLVLDG 114 Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAG 168 V ++A+GA + V E +++AA+ E +L + H G Sbjct: 115 AVATAYALGARELHVVVPQERPLVGTAIRAALAE--------RRDRLRTHL----HTAQG 162 Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 ++ G+ A+LE + G+ P A G G PT ++N E+ A V ++ G Y Sbjct: 163 RFVAGQARAVLELMAGRPNLPVTAWSPEAVAGHRGRPTLLSNAETWAQVGRLVLAGEERY 222 Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH-------CGGIRGGWDNLL 281 + G + GT L ++S + VE + + +++ + GG G W Sbjct: 223 AALGSADEPGTTLLTLSAATS--TVVEVELGSPWRDVLPEAWAGRSLLVGGFHGAWVPWA 280 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 ++ G SV D ++ + LG A V+V R + R+ + Sbjct: 281 TLVAGRVSV---------------DAMRAAETPLG-AGVVVAPRGCPVAFTA-RVVDYLA 323 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 +S +C PC G + R ++ +V G ++ L + + GR CA D A + Sbjct: 324 AQSARRCGPCLNGLPALARAVQEVVDGAGHPERVEGLAAL---VTGRGACAHPDGTARLV 380 Query: 402 QGLIKNF 408 + ++ F Sbjct: 381 RSMLATF 387 >gi|302869187|ref|YP_003837824.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Micromonospora aurantiaca ATCC 27029] gi|315504336|ref|YP_004083223.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Micromonospora sp. L5] gi|302572046|gb|ADL48248.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Micromonospora aurantiaca ATCC 27029] gi|315410955|gb|ADU09072.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Micromonospora sp. L5] Length = 488 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/367 (24%), Positives = 157/367 (42%), Gaps = 42/367 (11%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRH 100 ++ +A L+G+GGAGF K + + C D +VVNA E EP + KD+ ++ Sbjct: 47 LLRLAEAIDLKGKGGAGFPFARKLRAVLESCERQDLGAVVVVNATEGEPASWKDKVLLTR 106 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 PH +++G +A+FA+ A I V + + R SL A+ E + + Sbjct: 107 APHLILDGAALAAFALDAEEIVIGVADDDV-GRPSLTEALQE--------RRMPVPTTIV 157 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + H +I GE AL+ + G P ++ G+ G PT ++N E+ + + Sbjct: 158 TVPHR----FISGEGGALVNGINGLPHIPPGTKKRSSDSGVGGLPTLLSNAETYSQLAVA 213 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK---------HCG 271 R G Y+ G ++ GT L +++G P VE + E+++ G Sbjct: 214 ARIGPYEYAALGTDDEPGTVLLTVTGSAKRPAVVECAAGTPLREILDLCEVPPGPGILMG 273 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G G W + A A + GL +G LG ++ + T + Sbjct: 274 GYHGKW---------------ITAAAAERAEVSRKGLTAVGGTLGAGIIVPLGADTCPLG 318 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 ++ + ES GQC PC+ G + R ++ V G A ++L+ + +++GR C Sbjct: 319 EAAQVVRYLAGESAGQCGPCKMGLPDLARSVDLAVSGSAP---VELVRAAAGDVKGRGAC 375 Query: 392 ALGDAAA 398 + D A Sbjct: 376 SHPDGTA 382 >gi|169335144|ref|ZP_02862337.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM 17244] gi|169257882|gb|EDS71848.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM 17244] Length = 357 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 95/391 (24%), Positives = 158/391 (40%), Gaps = 69/391 (17%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR-PH 78 L D ++ G ++ K++ D +I+ +K + L R + ++C+DR Sbjct: 29 LDDYVAFGGYEASSKVVNNEVD-VISILKDANLVARKK-----------LNELCADRWSG 76 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 V + +P D + PH ++E +I A I V E R L Sbjct: 77 AETVVCETEDPMATLDLKVQTEAPHVIVEAMIIFMHVNNAKKGVIVVNDELAYNR--LNK 134 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 AV + +GL D DIIV S++G K +L AN Sbjct: 135 AVTDAKNAGL--------NDKDIIVSK--------------VSIDGLKENAQL----LAN 168 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 V +A+V + + +G K +I G V P E Sbjct: 169 V--------------VAIVQNSYKPAPA----------KGLKGVAIGGKVKNPGVYEIED 204 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 T+ +LIE+ GG G + P G + + + +++ L G GTA Sbjct: 205 GTTYRKLIEEIAGGATGKVKAIKVGAPYGEYL----SSDILDEKINFMSLMMNGMVRGTA 260 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 ++V+D STD+ K I F + SCG+C PC+ GT M +++ +VKG A K +++ Sbjct: 261 LIVVLDESTDMAKEISDYLGFLLNVSCGKCFPCKVGTKRMDEMVKEVVKGNATKENYNMI 320 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ N+ T+C +G A P+ ++NFR Sbjct: 321 KSIAVNMNIGTLCPIGQKGAVPVLTALENFR 351 >gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme DSM 15981] gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme DSM 15981] Length = 218 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A GG S C+PA I DYD L +GS +G+ +IVMD ++ F Sbjct: 14 AAQTGGPSGGCIPAEHFDIPI-DYDNLLAIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTV 72 Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCG+CT CR GT M+ ++E++ KG AQ ++D L E+ ++ ++C LG A P+ Sbjct: 73 EESCGKCTACRIGTKRMLEILEKITKGTAQMEDLDKLEELCHYVKANSLCGLGQTAPNPV 132 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 + FR E I + RC Sbjct: 133 LSTLHFFRDEYEAHIKE-KRC 152 >gi|284167379|ref|YP_003405657.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] gi|284017034|gb|ADB62984.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] Length = 507 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 142/344 (41%), Gaps = 54/344 (15%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV-RGEFIRERESLQA 138 +VVNA+E + DR ++ P +++G + +GA A +Y+ E +R QA Sbjct: 182 IVVNANEPDDRQQADRTLLAGAPIAVLDGVAAVAEYVGAEDAVVYLNEHETTLQRHVRQA 241 Query: 139 A---VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPP 194 A DE + Y G TA LE++EG + +PRL+PP Sbjct: 242 ANAIEDELPVVPDVVVGPD--------------EYRAGAPTAALEAMEGADRIEPRLQPP 287 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 PA GLYG PT V+ + A V + S + + GT+L +++G V P V Sbjct: 288 TPAEYGLYGRPTIVHTPRTFAQVRQAVHAPESIDADA---PDPGTRLVTVTGDVETPAIV 344 Query: 255 EESMSITFDELIEKH----------CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 E S T + ++ GG+ GG+ L V P S + A + Sbjct: 345 ELDSSATLETTLDAVSMEGSLKMACVGGVFGGFTTDLGVAPTARS--------LTAADLG 396 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 DG+ E+ S DR + A R + F + G+C P REGT + ++ Sbjct: 397 TDGVVELLS----------DRRCAVATAGER-AQFASEANSGRCVPGREGTKQLTELLRD 445 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 + G + D + E+ + + + C +G A P+ + F Sbjct: 446 VYAGAFRS---DGIRELGRVMARSSNCQIGAHAPRPVTTAMDEF 486 >gi|167945090|ref|ZP_02532164.1| NADH dehydrogenase (quinone) [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 96 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 ++G +++ V AG YI GEETA +ES+EG PR KPPFPA G++G PT VNN E+ Sbjct: 4 QMGKPIELSVMESAGHYIGGEETAAIESVEGNFPFPRGKPPFPAESGVHGYPTLVNNTET 63 Query: 214 IAVVPTILRRGASWYSGFG-RENNRGTKLF 242 +A VP I+R GA W+ G R +R L Sbjct: 64 LANVPHIMRHGADWFQALGDRRGHRDQDLL 93 >gi|284167343|ref|YP_003405621.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding protein [Haloterrigena turkmenica DSM 5511] gi|284016998|gb|ADB62948.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding protein [Haloterrigena turkmenica DSM 5511] Length = 495 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 145/325 (44%), Gaps = 44/325 (13%) Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 G+ D ++ P +++G + + + A +Y E ++ +AVD Sbjct: 186 GSPADTLLLSSAPFEVLDGASVLANTVAADRIVVYASSEDDTAVKTASSAVD-------- 237 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTV 208 + ++++ G Y E T +E++EG + + RL+PP P +GL G PT V Sbjct: 238 -TYPDPAAPMEVVT--GPKEYRAAEPTMAIEAIEGNHRLEARLRPPGPERLGLDGRPTLV 294 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 + ++A + LR G T++ ++ G V+ TVE S + EL+ Sbjct: 295 HTPRTLAHLAVGLREGIEEQ----------TRVMTVRGDVDAVATVELSETRKLSELV-- 342 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD---GLKEMGSG-LGTAAVI-VM 323 + G+ G + C+ G+ G D D GL+ + + LGT ++ V+ Sbjct: 343 NTVGVDGSF-----------KAACV-GGRFGGITRDLDVEIGLEALDNADLGTDGIVDVL 390 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 + +++ + + + F E+CG+C PCREGT + ++ + G + ID E+ + Sbjct: 391 SDAQCLVEFVGQRASFAAEENCGRCVPCREGTAQLTLLLRNVYDGDFDAQAID---ELGR 447 Query: 384 NIEGRTICALGDAAAWPIQGLIKNF 408 + +ICA G+ A P + I+ F Sbjct: 448 VMASSSICAFGERAGRPARTAIEAF 472 >gi|300709462|ref|YP_003735276.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali B3] gi|299123145|gb|ADJ13484.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali B3] Length = 522 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 162/370 (43%), Gaps = 32/370 (8%) Query: 43 IINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + +V A GL RGRG A + ++ ++ +VVN +E +P D+ +++ Sbjct: 149 LCEDVDALGLLGRGRGDARHDAPLASAWEATREAEGEPVVVVNGNEPDPAADADQLLLKS 208 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 P +++G + + A+GA +Y E+ A++ C + + LG V Sbjct: 209 APVAVLDGALTVAAAVGATDVVVYAN-------EADDLALERCETAAD-AIDDALGATVQ 260 Query: 161 IIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I G Y GE T LESLEG + + R PP P GL+G PT ++ ++A + T Sbjct: 261 IA--SGPDEYRAGEPTMALESLEGADRIEARRTPPGPEEHGLFGRPTAIHTPRTLAQLRT 318 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 L S+ + + + GT++ ++ + TVE S + + G D Sbjct: 319 ALLSPESFDAD---DADPGTRIVTVVDDADR-ATVELSTGSSLQTAL-----GAVPAEDF 369 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT-AAVIVMDRSTDIIKAIWRLSV 338 LA + G C G R + + LGT AV + D + + + + Sbjct: 370 KLACVGG-----CF-GGFTRTLDTPANAQSLDSANLGTNGAVELFDGTRCTVALAGKRAR 423 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F + +CG+C PCREG+ ++ ++ + G + + + E+++ + + C G AA+ Sbjct: 424 FAREANCGRCVPCREGSKQLVALLREVYDG---EYDSGSIRELTRVMRRTSTCYFGRAAS 480 Query: 399 WPIQGLIKNF 408 P+ + F Sbjct: 481 RPVTTAMDAF 490 >gi|156310284|ref|XP_001617721.1| hypothetical protein NEMVEDRAFT_v1g156896 [Nematostella vectensis] gi|156195451|gb|EDO25621.1| predicted protein [Nematostella vectensis] Length = 73 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/73 (56%), Positives = 49/73 (67%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+DRIFTNLYG L ++SRG W +I+ KG +WI+ E+ SGLRGRGGAGF TG Sbjct: 1 DEDRIFTNLYGRHDWKLKGAISRGDWYKTKEIILKGPEWILKEITTSGLRGRGGAGFPTG 60 Query: 64 MKWSFMPKVCSDR 76 MKW FM K R Sbjct: 61 MKWGFMNKPSDGR 73 >gi|300787792|ref|YP_003768083.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis mediterranei U32] gi|299797306|gb|ADJ47681.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis mediterranei U32] Length = 376 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 100/375 (26%), Positives = 161/375 (42%), Gaps = 50/375 (13%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + GRD +I V+A+ LRGRGGAGF T +K + + +V N E +P + KD Sbjct: 29 DDGRDRLIEAVEAADLRGRGGAGFPTAVKL----RAARSKRSIVVANGCEGDPLSRKDVA 84 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ PH +++G +A+ AIGA A + V D G+ + ++ Sbjct: 85 LLTLSPHLVLDGLQLAAHAIGAAEAVLCVHA-------------DSPALPGVAAALAERE 131 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + V Y+ EETAL+ L +P K P PA G+ G PT V+NVE++A Sbjct: 132 DRAPVRVAQVPRRYVASEETALVRYLTSGDARPLGKRPRPAERGVRGRPTLVSNVETLAQ 191 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + +++ G + Y R + T+L +++G V P VE + + + + G Sbjct: 192 LASVVLLGPNHY----RASR--TELVTVTGAVRRPGVVEVAAGTSLADALAAAG----GE 241 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG--LKEMGSGL-GTAAVIVMDRSTDIIKAI 333 + + AV+ GG Y G E+G G+ G AAV + ++ Sbjct: 242 AEPVQAVLAGG-----------------YGGTWTAELGGGVPGIAAVHALPVRACGLEYT 284 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 ++ F ES QC PC G + LV+G + + + GR CA Sbjct: 285 AKVLAFLAAESARQCGPCTFGLPSIAADFAELVRGGPAAPRLARRLPL---LTGRGACAH 341 Query: 394 GDAAAWPIQGLIKNF 408 D AA ++ F Sbjct: 342 PDGAARLAASALQVF 356 >gi|115702485|ref|XP_789599.2| PREDICTED: similar to mitochondrial complex I subunit NDUFV1 [Strongylocentrotus purpuratus] gi|115941567|ref|XP_001184929.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV1 [Strongylocentrotus purpuratus] Length = 319 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/69 (57%), Positives = 49/69 (71%) Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 ++GF E N+ TKLF+ISG+VN PCTVEES S IEKH GG+ GGW++LL V PGG Sbjct: 244 FAGFRCERNQATKLFNISGNVNTPCTVEESKSTPLKFFIEKHAGGVEGGWNDLLTVNPGG 303 Query: 288 SSVPCLPAG 296 SS +P G Sbjct: 304 SSTSMIPKG 312 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/43 (76%), Positives = 35/43 (81%) Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288 G+VN PCTVEES SI LIEKH GG+ GGWDNLLAVIPGGS Sbjct: 23 GNVNTPCTVEESKSIPLKFLIEKHAGGVEGGWDNLLAVIPGGS 65 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/48 (68%), Positives = 37/48 (77%) Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 +VN P TVEES SI LIEKH GG+ GGWDNLLAVIPGGSS+ +P Sbjct: 67 NVNTPFTVEESKSIPLKFLIEKHAGGVEGGWDNLLAVIPGGSSISMIP 114 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/59 (55%), Positives = 38/59 (64%) Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 +R +K G+VN PCTVEES S LIEKH GG+ GGWDNLL V GGSS +P Sbjct: 174 SRKSKKPHKKGNVNTPCTVEESKSTPLKFLIEKHAGGVEGGWDNLLTVNSGGSSTSMIP 232 >gi|302538138|ref|ZP_07290480.1| oxidoreductase [Streptomyces sp. C] gi|302447033|gb|EFL18849.1| oxidoreductase [Streptomyces sp. C] Length = 369 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 135/326 (41%), Gaps = 27/326 (8%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIM 98 D +++ LRGRGGAGF K + +R P +VVN E EP KD+ ++ Sbjct: 66 DELVDLAADIDLRGRGGAGFPFARKLRAVIGSAREREGPTAVVVNGSEGEPSCLKDKALL 125 Query: 99 RHEPH-TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 H PH L + A+ R + R S++ AV E G ++L Sbjct: 126 LHAPHLVLDGALLAAAAVGAEEVVVAVTRADVER---SVRDAVAERGPGGRRVRVARLPE 182 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++ GE TA++ L G P + + GL G PT ++N E+ A + Sbjct: 183 R-----------FVTGEGTAMVGGLNGGAALPSGRRVRTSERGLGGVPTLLSNTETYAQL 231 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 R GA Y G + GT L +++G TV E+ + T + C G R G Sbjct: 232 AVAARMGAPDYRAAGLPSEPGTVLLTVAGQ-----TVVETPTGTSLAYVLDLC-GTRTGQ 285 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 V+ GG L G R A + L G+ LG AV+ + T + R++ Sbjct: 286 ----GVLVGGYHGRWLDPGAARSADVSRGSLSAFGAVLGAGAVLPLPEDTCPAGEVARVT 341 Query: 338 VFYKHESCGQCTPCREGTGWMMRVME 363 + ES GQC PC G + V+E Sbjct: 342 RWMAKESAGQCGPCVRGLPGLADVLE 367 >gi|331694618|ref|YP_004330857.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] gi|326949307|gb|AEA23004.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] Length = 424 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%) Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 Y+ EE+AL+ L G+ P PP PA G+ G PT V+NVE++A + I G W+ Sbjct: 161 YVASEESALVGYLSGRPALPTTTPPRPAERGVAGRPTLVDNVETLAHLALIAHHGPDWFR 220 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-WDNLLAVIPGGS 288 G + GT L + G + P E T ++E + GG + + A++ GG Sbjct: 221 RAGTSDLPGTLLVTTGGALRDPGVDEVPGGTTVQAVLE-----LAGGPAEPVQAILSGGY 275 Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 L + + ++ ++ GS LG ++ + + L ES GQC Sbjct: 276 GGAWLGIDAL-ATPLTHEAMRSAGSALGVPTLLALPTRVCGLGQTAHLLDHLAAESAGQC 334 Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDL-LYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 PCR G + + + +V G + L ++GR CA D + ++ ++ Sbjct: 335 GPCRFGLPAIAQDLRAIVHGSPGAPDAHARLQRRLGTVDGRGACAHPDGSVRLVRSALRV 394 Query: 408 FR 409 FR Sbjct: 395 FR 396 >gi|330884138|gb|EGH18287.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. race 4] Length = 82 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/80 (47%), Positives = 53/80 (66%) Query: 57 GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 GAGF TG+KW MPK S YL+ NADE EP T KDR +M PH L+EG +I++ A+ Sbjct: 1 GAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARAL 60 Query: 117 GAHCAFIYVRGEFIRERESL 136 A+ +I++RGE++ + L Sbjct: 61 KAYRGYIFLRGEYVTAAKHL 80 >gi|225620388|ref|YP_002721645.1| NADH dehydrogenase [Brachyspira hyodysenteriae WA1] gi|225215207|gb|ACN83941.1| DH dehydrogenase [Brachyspira hyodysenteriae WA1] Length = 387 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/348 (19%), Positives = 141/348 (40%), Gaps = 33/348 (9%) Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + ++++NA + KD+ ++R+ PH +++G V + + I ++ ++ ER+ Sbjct: 64 KEDFILINAASFDYLVFKDKFLLRNNPHLILDGSVFIAKILNIKRIDIVLKDYYLEERDI 123 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + ++ E ++ YD++I ++ Y K R+ P F Sbjct: 124 ILKSIVE-------AEDANFVYDIEINIYDEYAYY--------------NKYNIRITPSF 162 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 N + ++E+I+ + + G + +G +G+ + SI+G + P E Sbjct: 163 LEN------KKYIFDLETISQIAYLAHIGGFTFKDYGNGEYKGSNILSITGDIINPNLYE 216 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M ++ K GG + + V G P + + +DY+ + + Sbjct: 217 FEMHTPLRNIV-KAAGGTVKEY-TIKCVFTNGFLNPPIDFETFQKMTLDYECFDSLNMKI 274 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G + + II+ + ++ F K SCG+C+PC G + R++ G + + Sbjct: 275 GNGGICFIQEDRCIIRVVVKIIQFGKSISCGKCSPCHNGFDLCEYYINRMLLGNSNFDDY 334 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP----LIEERIDQY 419 L E + I+ C + A I ++ FR LIE +I Y Sbjct: 335 SNLKEAVEMIKIGASCLYIRSLANCILSTMEMFRDEFVYLIENKITLY 382 >gi|302559184|ref|ZP_07311526.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F [Streptomyces griseoflavus Tu4000] gi|302476802|gb|EFL39895.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F [Streptomyces griseoflavus Tu4000] Length = 328 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 10/190 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ V+A+GL GRGGAGF T K + +VVNA ESEP + KD+ ++ P Sbjct: 63 LVEAVEAAGLTGRGGAGFPTARKLRAVAGRRRR--AVVVVNAMESEPASRKDQFLLAVAP 120 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +++G V+A+ A+GA + + + + + AA+DE + L Sbjct: 121 HLVLDGAVLAASAVGADTVHVCLPRDRPAQYRRMDAALDERRRARLDRVRLL-------- 172 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 H Y+ E TAL+ L G +P+ PP G+ PT V+N E++A + I R Sbjct: 173 AHALPHTYVSSESTALVHWLNGGPARPQGGPPGNRERGVDRRPTLVSNAETLAHLALIAR 232 Query: 223 RGASWYSGFG 232 G W+ G Sbjct: 233 HGPGWFRRLG 242 >gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 306 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 SL D + G + + + G +I EV SGL GRGGA F TG KW DRPH Sbjct: 215 SLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQATASR-PDRPH 273 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEG 108 YLV NADESEPGT KDR IM +P+ +G Sbjct: 274 YLVCNADESEPGTFKDRVIMEGDPYAWRDG 303 >gi|320010870|gb|ADW05720.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Streptomyces flavogriseus ATCC 33331] Length = 524 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 156/359 (43%), Gaps = 16/359 (4%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 LRGRGGAGF G K + K R +V+N E EP KD ++ PH +++G Sbjct: 58 LRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDTVLLNRAPHLILDGA 117 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++A+ A+GA + V R S + +V A G + + G + V Sbjct: 118 LLAAEALGARTLVVAV------TRNSTEMSVRSALAE--RGLSDRRGQHLRARVVRTPER 169 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + GE +A++ ++ G P + A G+ G PT ++N E+ A + R G Y Sbjct: 170 MVSGEASAVIRAVNGGPALPPGRRERAAESGVAGAPTLLSNAETYAQLAVAARLGPRRYG 229 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G + GT L ++SG V P VE + +++ + G V+ GG Sbjct: 230 HTGLADEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLQ-----LAGAPPLPQGVLTGGYH 284 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 + + + A++ L +G LG AV+ + T I R++ + E+ GQC Sbjct: 285 GNWIDSTALHDAVVSRASLAAVGGALGAGAVLPIGPETCPIGESLRIANWLAAETAGQCG 344 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 PC+ G + ++ G ++ L EV++ ++GR C D +A + + F Sbjct: 345 PCKLGLPAAAGGLSDVLNG-GGPAALEALREVTQAVKGRGACKHPDGSARFLSSTLSAF 402 >gi|167830055|ref|ZP_02461526.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9] Length = 251 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEY 226 >gi|167720687|ref|ZP_02403923.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei DM98] Length = 210 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S+ D ++ G + + L + SGLRGRGGA F G+KW + + + + Sbjct: 97 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 155 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 Y+V NADE + GT DR +M +P+ LIEG +IA A GA IYVR E+ Sbjct: 156 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEY 206 >gi|227529420|ref|ZP_03959469.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] gi|227350663|gb|EEJ40954.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] Length = 72 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 1/72 (1%) Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181 I++RGE+I +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ S Sbjct: 1 IFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINS 60 Query: 182 LEGKKGQPRLKP 193 LEG++ PR KP Sbjct: 61 LEGRRANPRSKP 72 >gi|115639273|ref|XP_001201081.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, partial [Strongylocentrotus purpuratus] gi|115654865|ref|XP_798823.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, partial [Strongylocentrotus purpuratus] Length = 62 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 35/56 (62%), Positives = 42/56 (75%) Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 I R GA W++GFGRE N+G KLF+ISG+VN PCT+EES S LIEKH GG+ G Sbjct: 2 ICRNGALWFAGFGRERNQGIKLFNISGNVNTPCTMEESKSTPLKFLIEKHAGGVEG 57 >gi|238683703|gb|ACR54130.1| NADH dehydrogenase flavoprotein 1 [Palaemonetes varians] Length = 59 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 33/50 (66%), Positives = 41/50 (82%) Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 A EID L+EVSK IEG TICALGD AAWP+QGLI++FRP++EER+ + Sbjct: 1 ASPDEIDALWEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEERMATF 50 >gi|213025627|ref|ZP_03340074.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 112 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 ++ + + GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ Sbjct: 1 FESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRA 60 Query: 365 LVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 L +G Q +I+ L ++ + + G+T CA A P+Q IK FR E Sbjct: 61 LERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 110 >gi|296126170|ref|YP_003633422.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Brachyspira murdochii DSM 12563] gi|296017986|gb|ADG71223.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Brachyspira murdochii DSM 12563] Length = 386 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 70/344 (20%), Positives = 134/344 (38%), Gaps = 34/344 (9%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 ++VNA + KDR ++++ PH +++G + + + I ++ + E++ L A Sbjct: 68 IIVNAASFDYLVFKDRFLIKNNPHLILDGALYLAKILNIKIINIVLKDYYSEEKKILIKA 127 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + E +G YD+ I ++ Y E S E KK Sbjct: 128 IAEAEDAGF-------AYDIKINIYDEQTYYSENHERITPLSFENKK------------- 167 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 + ++E+I + + G + +G N+GT + S+SG + E M Sbjct: 168 -------YIFDLETITQITYLAHIGEFSFKNYGAYENKGTYILSMSGDIINTNIYEFEMY 220 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 +I + CG I+ ++ V G P + + +DY+ +G Sbjct: 221 TPIKNII-RACGTIKDY--SIKCVFTNGFLNPPIDFISFQNMTLDYECFNSFNMNIGNGG 277 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 + + +++ I ++ F K SCG+C PC G + +++ G + + L Sbjct: 278 ICFIREDRCMVRVILKIVQFAKSVSCGKCMPCHYGFDLCEYYINKMLLGNSDNEDYTNLK 337 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRP----LIEERIDQY 419 E + I +IC + I I FR LIE ++ Y Sbjct: 338 EAIEMINTGSICLYIKKLSHCILSSIDMFRDEFLYLIENKVALY 381 >gi|238609524|ref|XP_002397505.1| hypothetical protein MPER_02055 [Moniliophthora perniciosa FA553] gi|215472091|gb|EEB98435.1| hypothetical protein MPER_02055 [Moniliophthora perniciosa FA553] Length = 75 Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 29/47 (61%), Positives = 39/47 (82%) Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +L E++K +EGRTICALGDAAAWPIQGL+++FRP +E RI ++ N Sbjct: 1 MLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVEARIAKFREEN 47 >gi|325523852|gb|EGD02080.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49] Length = 155 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 2/155 (1%) Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I RGA++Y +G +RGT F ++G++ + VE + +T EL+ + GG G Sbjct: 1 IFARGAAFYRDYGMGRSRGTLPFQLAGNIRHGGLVELAFGVTLRELLFEFGGGTASGRPA 60 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A + GG LP Q +DY+ +G+ +G +++ D ++++ F Sbjct: 61 RAAQV-GGPLGTYLPEHQWD-VPLDYEAYAAIGAVVGHGGIVLHDDTSNLAALAEYAMKF 118 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 ESCG+CTPCR G+ + + R+ +G +R+ Sbjct: 119 CAIESCGKCTPCRIGSTRGVETIARIRQGDTSERQ 153 >gi|77920097|ref|YP_357912.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter carbinolicus DSM 2380] gi|77546180|gb|ABA89742.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter carbinolicus DSM 2380] Length = 663 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 6/130 (4%) Query: 302 IMDYDGLKEMGSG------LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + ++D + E G LG V D+ T I+ A + ESCG+CTPCR GT Sbjct: 27 LKEFDQMDEFDPGNPVKAFLGANGFFVFDKETSILDAAHQYVATAARESCGKCTPCRVGT 86 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + +E L KG +D + ++++I+ ++C LG A P+ ++++FR E Sbjct: 87 EVLTSKLEALSKGELGADAVDEILTLAEHIKSTSMCGLGQTATDPLIAMLRHFRDEFEVN 146 Query: 416 IDQYHRCNFQ 425 I +Y Q Sbjct: 147 IGRYDETGRQ 156 >gi|297194423|ref|ZP_06911821.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] gi|297152265|gb|EFH31625.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] Length = 269 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 20/244 (8%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 L GRGGAGF G K + K R +VVN E EP KD ++ PH +++G Sbjct: 24 LTGRGGAGFPFGKKLRAVAKSAIRRGIRPVVVVNGSEGEPACRKDTVLLNRAPHLILDGA 83 Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169 ++A+ A+GA + V R S + ++ A G + + G + V Sbjct: 84 LLAAEALGARTLVVAV------TRNSTEISMRAALAE--RGLSDRRGQALRARVVRTPER 135 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 + GE ++++ ++ G P + A G+ G PT ++N E+ A + R GA YS Sbjct: 136 MVSGEASSVIRAVNGGPALPPGRRVRAAETGVGGAPTLLSNAETFAQLAVAARIGARRYS 195 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH----------CGGIRGGWDN 279 G ++ GT + +ISG V P VE + +++ GG G W + Sbjct: 196 HTGLDSEPGTVMLTISGAVARPMVVEVPTGVPLRYVLQLAGAPPQPQGVLTGGYHGNWID 255 Query: 280 LLAV 283 AV Sbjct: 256 AAAV 259 >gi|295091667|emb|CBK77774.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Clostridium cf. saccharolyticum K10] Length = 479 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 77/320 (24%), Positives = 130/320 (40%), Gaps = 68/320 (21%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +++++G+ G GGAGF K + R YL+VNA E EP DR +M H+ Sbjct: 3 LLEQIESAGIVGCGGAGFPAHKKLNC-------RVEYLIVNAAECEPLLRTDRWLMIHKA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ +A A +I ++ + E +L AA++E GY V + Sbjct: 56 KEIVTAAALAGSMTEASHIYIALKETYREEAAALTAAIEE------------TGYPVKLF 103 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 Y G+E ++ + G R PP P +VG + Sbjct: 104 PMR--NFYPAGDEQIMVCDVTG-----RTVPPSGIPLDVG------------------CV 138 Query: 221 LRRGASWYSGFGRENNRGT----KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + A+ Y+ F E ++G K +++G VN PC V + +F + C + GG Sbjct: 139 IANTATMYAVF--EASQGKPLTRKYLTVTGAVNEPCIVRAPLGSSFSD-----CLRLAGG 191 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AI 333 G S L G M G + + + + T+ +IV+ T +I+ A Sbjct: 192 T--------GLSRYYVLAGGPMMGKLYSMEEAESLTVTKTTSGLIVLPEDTPLIRRKTAP 243 Query: 334 WRLSVFYKHESCGQCTPCRE 353 LS+ SC QC+ C + Sbjct: 244 VSLSLKLAKTSCIQCSYCTQ 263 >gi|302529506|ref|ZP_07281848.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4] gi|302438401|gb|EFL10217.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4] Length = 368 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 28/234 (11%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 RD +I+E+ +G+RGRGGAGF K V R +V N ES+P + KDR ++ Sbjct: 24 RDALIHEIDVAGIRGRGGAGFPAAAKLR---SVAPGR-SIVVANGCESDPFSSKDRALLE 79 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 PH +++G +A+ A+GA A++ +R S+ AA+ E + V Sbjct: 80 LAPHLVLDGIQVAAHAVGATEAYLCLR----EGNRSVLAALAE--------RRDAVPVKV 127 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + H Y+ EETAL+ L +P K P P GL G PT V NVE++A Sbjct: 128 VAVPHR----YVASEETALVHFLGSGDARPTGKFPRPTERGLRGRPTLVQNVETLARFAL 183 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 + R GA + T L +++G V P +E ++ + G + Sbjct: 184 VARTGADRFV--------PTDLVTVTGAVARPGVMEVPADTPVSAILARAGGSV 229 >gi|46202100|ref|ZP_00053780.2| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 212 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 13/175 (7%) Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 SISG P E + +++ CG D I G S + P G Sbjct: 2 SISGDCERPGIYEYPYGVKVSQVLAD-CGA----RDTQACQIAGASGLAIAP--NEFGRR 54 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 + ++ + GS ++ D + D+ + + F+ HESCG CTPCR GT + M Sbjct: 55 IAFEDIPTGGS------FMIFDNTRDMFQVARNFAHFFVHESCGFCTPCRVGTTLLANAM 108 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++ +G + +I ++ V + ++ + C LG A + ++ FRP E R++ Sbjct: 109 DKIDEGHGGEYDISDIWRVIRTLKTASHCGLGQTAGNAVADTLQKFRPSYELRLN 163 >gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magnetotacticum MS-1] Length = 257 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 36/54 (66%), Gaps = 3/54 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCK 93 +++ +K SGLRGRGGAGFSTG KW F P HY+V NADE EPGT K Sbjct: 204 VLDAIKESGLRGRGGAGFSTGQKWDFCRAAVGTGPHAAHYVVCNADEGEPGTFK 257 >gi|284118231|ref|ZP_06386764.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829467|gb|EFC33837.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] Length = 110 Score = 63.2 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 51/91 (56%) Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +T ++ +LS F++ ESCGQC PCR GT + +M ++ +G + ++D L ++ + Sbjct: 1 ATCMVGQTLKLSTFFREESCGQCPPCRIGTEHLEELMAKIEEGTGTREDLDKLLQICGFV 60 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G C L AA +Q ++ FR EE + Sbjct: 61 KGTGYCTLVTGAAVLVQNSLRLFRHEFEEHV 91 >gi|312198406|ref|YP_004018467.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia sp. EuI1c] gi|311229742|gb|ADP82597.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia sp. EuI1c] Length = 435 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 23/114 (20%) Query: 28 HWDNVDKILEKGRD-WIINEVKASGLRGRGGAGF--------------STGMKWSFMPKV 72 H + + +GR +++E++A+GL GRGGAGF S G WS Sbjct: 36 HVARLGPVPYRGRPAQLVDELRAAGLTGRGGAGFPMWRKLAAALGPDTSGGQAWSG---- 91 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 P +V NA ESEP + KD ++ H PH +++G + + A+ A A++YV+ Sbjct: 92 ----PASVVANAAESEPESAKDAWLLTHAPHLVLDGLALVAEAVSAADAYVYVK 141 >gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii DSM 18315] gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii DSM 18315] Length = 184 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 2/106 (1%) Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVM 362 DYD L GS +G+ +IVMD D + A+ + + F ESCG+C PCR G + ++ Sbjct: 1 DYDNLLAAGSMMGSGGMIVMDED-DCMVAMAKFYLDFTVEESCGKCAPCRIGNKRLHEML 59 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ G +++ L ++ I+ +C LG + P+ + NF Sbjct: 60 QKITSGNGTIEDLNRLRNLAGVIKDTALCGLGQTSPNPVLSTMDNF 105 >gi|218512403|ref|ZP_03509243.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3] Length = 119 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 56/105 (53%) Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ + + Sbjct: 1 DYESFAARDGLIGHAGMVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETAD 60 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ +GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 61 KIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 105 >gi|150018599|ref|YP_001310853.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149905064|gb|ABR35897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 414 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 15/227 (6%) Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 K F +V + T V+N E++ + L EN K+ SI+G V Sbjct: 99 KKAFEKDV--FNEVTLVHNAETMYALKNSLE-----------ENYIPKKIISIAGDVKNS 145 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + E+I ++ GG + V GG++ ++ + Y L Sbjct: 146 GIYEIPFGTSLREIISEYGGGTES-EKAIKFVQVGGNTGAVFTEEELDTPFL-YSNLIGN 203 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ L + + V + ++ + + + E+CG+C CREG + ++++ +G + Sbjct: 204 GTMLEVSKIEVYNVDMCVVNWVTQKMLDNSKETCGKCVYCREGIYQLYKIIKDATEGKGK 263 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +I+L ++S+ I+ T+C G A+ P+ I FR E+ ID+ Sbjct: 264 ESDINLALQLSETIKIGTLCDFGRTASNPLYTAINKFRDEFEKHIDR 310 >gi|325681300|ref|ZP_08160829.1| putative protein HymB [Ruminococcus albus 8] gi|324106991|gb|EGC01278.1| putative protein HymB [Ruminococcus albus 8] Length = 252 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D ++ EV SG+RGRGGAGF TG KW F D Y+ NADE +PG DR I+ Sbjct: 186 DEVVKEVLDSGIRGRGGAGFPTGRKWMFTKDAPGD-VKYVACNADEGDPGAFMDRSILEG 244 Query: 101 EP 102 +P Sbjct: 245 DP 246 >gi|167720688|ref|ZP_02403924.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei DM98] Length = 143 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 57/106 (53%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + + Sbjct: 21 LDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETI 80 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 81 ARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 126 >gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016] gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 320 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 305 YDGLKEMGSGLGTAAVIVMDRS--TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 Y+ LKE+ + +I+ DR+ D++K F E CG+C PCREG M+ + Sbjct: 140 YEALKEVLLEM-KPEIIIGDRNCMVDVVKDYLN---FLSKEFCGKCIPCREGVKRMLEMA 195 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +G A++R+I+ + ++S I ++C LG A PI I+ FR EE + + RC Sbjct: 196 TDICEGNAKERDIENMLQMSYVISQASLCNLGKRAQNPIMIAIRYFRDEFEEHL-KNKRC 254 >gi|297745531|emb|CBI40696.3| unnamed protein product [Vitis vinifera] Length = 98 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 39/62 (62%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+D IFTN+YGL L +M G W I+ KG DWI++E+K SGLRGRGG G Sbjct: 25 DEDCIFTNIYGLHDPFLKSAMKMGGWYKTGDIVLKGSDWIVSEMKESGLRGRGGVEVRNG 84 Query: 64 MK 65 ++ Sbjct: 85 VE 86 >gi|167945091|ref|ZP_02532165.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 114 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M ++LI +H GG+ G + L AV GG S L + +D++ + S LGT Sbjct: 1 MGTPLEQLIFEHGGGMLVGKE-LKAVFTGGPSNTILTPKDLD-VPLDFESVAARRSALGT 58 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 A+IV+ T I+K + F+ SCGQC PC+ GT ++ ++ ++ G Sbjct: 59 GAMIVVSEGTGIVKRVTEYVNFFADSSCGQCPPCKTGTYYISLLLSKIDTG 109 >gi|254670960|emb|CBA07636.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria meningitidis alpha153] Length = 96 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP S R Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPPFLSGR 81 >gi|171463483|ref|YP_001797596.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193021|gb|ACB43982.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 110 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%) Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 M +++D L+ G + +AAV+V D++ D+ + F++HESCGQCTPCR G Sbjct: 1 MNDIPLNFDTLQPYGCFIDSAAVMVFSDKDKARDMALNVMH---FFEHESCGQCTPCRVG 57 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 TG ++M+ + + L E++ + +IC G AA PI+ + K F Sbjct: 58 TGKAAQLMQ------TKSWDRKTLEELATVMVDASICGRGQAAPNPIRCIHKYF 105 >gi|115525857|ref|YP_782768.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Rhodopseudomonas palustris BisA53] gi|115519804|gb|ABJ07788.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Rhodopseudomonas palustris BisA53] Length = 665 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G WD ++ G++ P ++ ++D ++ + G V D + I+ A++ Sbjct: 7 GVWDGVVYDSRTGAADAKTPEYALQN-FDEFDDGNQIRAFFGDRGFFVFDATVSIVDALY 65 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 +SCG CTPCR GT + ++R+ + + +D + + + + ++C LG Sbjct: 66 HYMTKAAEQSCGACTPCRMGTVLVRDALDRMRRSLGSTLSLDDIEMLGEQMRQTSLCGLG 125 Query: 395 DAAAWPIQGLIKNFRPLIEERI 416 + A + ++ NFR IE + Sbjct: 126 QSCAVALLDVLHNFRDQIEAEL 147 >gi|222054704|ref|YP_002537066.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter sp. FRC-32] gi|221563993|gb|ACM19965.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter sp. FRC-32] Length = 672 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 8/109 (7%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 YDG + + + +G +IV DRS D+ + + R+ Y CG+CTP ++GT +M Sbjct: 33 YDGERPLAAFMGWDGLIVFDRSVDVPAMAAEYMRRVQTLY---CCGKCTPGKKGTKVLMD 89 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ G A + ++D + +++K +E C L ++ P+ +KNFR Sbjct: 90 TLAAILGGNATEADLDTIEDLTKLLEN-CKCTLCQSSTVPVLDAVKNFR 137 >gi|160942347|ref|ZP_02089655.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC BAA-613] gi|158434711|gb|EDP12478.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC BAA-613] Length = 450 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 79/322 (24%), Positives = 130/322 (40%), Gaps = 72/322 (22%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ ++K +G+ G GGAGF T +K + C+ YL++NA E EP DR +M H+ Sbjct: 3 LLEQIKEAGIVGCGGAGFPTHVKLN-----CTVE--YLIINAAECEPLLRTDRFLMLHKA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ + + A +I ++ + E +L+AA+ E L S KL Sbjct: 56 REIVTAAGMIGDMVQAGKRYIVLKETYSEEIAALEAAITE------LHSPVKL------- 102 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 + Y G+E ++ + G R PP P +VG V+N+ Sbjct: 103 -YKMKNFYPAGDEQIMVCDVTG-----RTVPPSGIPLDVG-----AVVSNL--------- 142 Query: 221 LRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 A+ YS + + K +++G VN PC V + +F E + + G Sbjct: 143 ----ATVYSIYNASQGQPFTEKYLTVTGAVNSPCIVRAPLGTSFAECL------LLAGGS 192 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA-----VIVMDRSTDIIKAI 333 +L SS + G M G KE +GL +IV D + + K Sbjct: 193 SL-------SSFHVIAGGPMMGKCYR----KEEAAGLTVTKTTSGYIIVADDTPLVEKHN 241 Query: 334 WRLSVFYKHES--CGQCTPCRE 353 +SV K C QC+ C + Sbjct: 242 IPISVSLKRAKMCCIQCSYCTQ 263 >gi|39933212|ref|NP_945488.1| oxidoreductase [Rhodopseudomonas palustris CGA009] gi|39652837|emb|CAE25579.1| possible oxidoreductase [Rhodopseudomonas palustris CGA009] Length = 673 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 52/99 (52%) Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 V D + ++ A++ +SCG CTPCR GT + ++++ +G+ +D + Sbjct: 60 FVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALDQMRRGLDAALTLDDIVM 119 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + + I ++C LG A + ++++FR IE+ + Q+ Sbjct: 120 LGEQIRQTSLCGLGQTCAVALLAVLRDFRERIEQELAQH 158 >gi|83591135|ref|YP_431144.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Moorella thermoacetica ATCC 39073] gi|1658402|gb|AAB18329.1| formate dehydrogenase beta subunit [Moorella thermoacetica] gi|83574049|gb|ABC20601.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Moorella thermoacetica ATCC 39073] Length = 707 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 4/112 (3%) Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G +++ + +G ++V D + D++ A+ + ESCG+C PCR GT + V+ R+ Sbjct: 32 GGRQLKAFIGWDGLVVTDPAVDLLAALQAYYQAVQGESCGRCVPCRVGTRVIYNVLVRIA 91 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF----RPLIEE 414 G ++DLL V+ + ++C LG A A + + + RP +E+ Sbjct: 92 GGEGLPSDLDLLRRVAWIVRDGSLCELGQAGAKAVLDFLDYYSEALRPFLED 143 >gi|162446934|ref|YP_001620066.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma laidlawii PG-8A] gi|161985041|gb|ABX80690.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma laidlawii PG-8A] Length = 432 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L +S+ + +DK+ ++ D++ N K +GL G GG+GF T +K + K+ Sbjct: 104 LHESVKTRTDEEIDKLTKE--DYV-NITKEAGLVGLGGSGFPTYIKLNTKNKI-----DI 155 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 ++ N E EP D ++M P LI G + A A+GA I V+ ++ E ++ + Sbjct: 156 ILANGVECEPKLISDYEVMMESPDELIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFS 215 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + NS YD+ ++ Y G E +E+ G K P+ K PA+ Sbjct: 216 L-----------NSYTEYDIKVV--PVGNHYPQGWELEAIEAATGIK-VPQFK--LPADY 259 Query: 200 GLYGCPTTVNNVESI 214 G+ P V+ ++SI Sbjct: 260 GI--IPFNVSTLQSI 272 >gi|316931524|ref|YP_004106506.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodopseudomonas palustris DX-1] gi|315599238|gb|ADU41773.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodopseudomonas palustris DX-1] Length = 666 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 48/96 (50%) Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 V D + ++ A++ +SCG CTPCR GT + ++++ +G+ +D + Sbjct: 53 FVFDPTVSLVDALYHYLKTAAEQSCGACTPCRVGTVLVRDALDQMRRGMDAALTLDDIVM 112 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + + I ++C LG A + ++ FRP +E + Sbjct: 113 LGEQIRQTSLCGLGQTCAVALLAALREFRPRVEREL 148 >gi|192288571|ref|YP_001989176.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Rhodopseudomonas palustris TIE-1] gi|192282320|gb|ACE98700.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Rhodopseudomonas palustris TIE-1] Length = 663 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 51/99 (51%) Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 V D + ++ A++ +SCG CTPCR GT + ++++ +G+ +D + Sbjct: 50 FVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALDQMRRGLDAALTLDDIVM 109 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + + I ++C LG A + +++FR IE+ + Q+ Sbjct: 110 LGEQIRQTSLCGLGQTCAVALLAALRDFRGRIEQELAQH 148 >gi|260893625|ref|YP_003239722.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex degensii KC4] gi|260865766|gb|ACX52872.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex degensii KC4] Length = 270 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ GA D+D L + S LG+A + +D S ++ + + + ESC +C PC GT Sbjct: 133 KVDGAPTDWDELGKAASVLGSAGKVFLDESVSMVDIVRYFMEYVQQESCAECRPCPIGTK 192 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 +++ ++ L G A + L+ E+++ I+ + C LG A + L + F +E Sbjct: 193 FILDLLNDLGNGGAMP-DSSLVKELARTIKQGSKCGLGRVAGLITEKLWERFYDELE 248 >gi|325570424|ref|ZP_08146201.1| electron transport complex protein RnfC [Enterococcus casseliflavus ATCC 12755] gi|325156634|gb|EGC68811.1| electron transport complex protein RnfC [Enterococcus casseliflavus ATCC 12755] Length = 445 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 81/360 (22%), Positives = 129/360 (35%), Gaps = 78/360 (21%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 I N Y Q LS W + + I+N+++ G+ G+GGA F T +K+S Sbjct: 101 IIENDYAYQNDFLSAPFD---WQSA------ANETILNKIRQGGVAGKGGATFPTHVKFS 151 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + + H L++N E EP D +M+ E +I G IA + I + Sbjct: 152 IDE---TQKIHTLILNGSECEPFLRSDAFLMQKEAQKIIHGAKIAQKLLDGPKIIIGIED 208 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 + R ++QAA E D I V Y G E L+E L ++ Sbjct: 209 DKPRAISAMQAASAE---------------DDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253 Query: 188 QPRLKPP---FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 P A++G+ +N S A+ + + + ++ Sbjct: 254 ------PLGGLTADIGI----VLINVATSFAIAEAVC-----------YDKPLIERYTTV 292 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRGAIM 303 +G V PC V+ + ELI+ GG +G L+ P G SV L + Sbjct: 293 TGDVQNPCIVKNPLGTLAGELID-FAGGFQGAPSKLILGGPMMGKSVKTLKVPVTK---- 347 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 G+ ++V + TD W Y C +C C E + ME Sbjct: 348 ------------GSNGIVVFNEETD-----W----LYAENPCIRCNKCVEACPMRLMPME 386 >gi|319941097|ref|ZP_08015433.1| hypothetical protein HMPREF9464_00652 [Sutterella wadsworthensis 3_1_45B] gi|319805454|gb|EFW02256.1| hypothetical protein HMPREF9464_00652 [Sutterella wadsworthensis 3_1_45B] Length = 684 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 60/121 (49%) Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 LP G ++ + S +G +V + + + ++ + SCG+CTPCR Sbjct: 26 LPVGFPLEEAAAFNRGNPLTSVIGPQGFLVFENAPHLTVILYAYYEDARSFSCGRCTPCR 85 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 GT + ++ ++G + D + E +++++ ++C +G +A PI G I+NFR + Sbjct: 86 MGTVLIAEALKNALEGRGSTVDWDEIAETARHMKVSSLCGIGLQSAEPILGAIENFRTEL 145 Query: 413 E 413 E Sbjct: 146 E 146 >gi|332799823|ref|YP_004461322.1| RnfABCDGE type electron transport complex subunit C [Tepidanaerobacter sp. Re1] gi|332697558|gb|AEE92015.1| electron transport complex, RnfABCDGE type, C subunit [Tepidanaerobacter sp. Re1] Length = 440 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 63/293 (21%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I N ++ +G+ G GGAGF T +K S P+ D ++VNA E EP D ++ Sbjct: 121 QDEIKNLIREAGITGLGGAGFPTQVKLSVPPEKNID---TIIVNAAECEPYITADHRLLL 177 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 P +I G A G +FI + +S+ A+ K G +V Sbjct: 178 ERPEDVIFGLEAIMKATGVKKSFIGIEDNKPDAIDSISKAI-----------AGKKGIEV 226 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVV 217 ++ A Y G E L++++ G R P P +VG+ VNN + A + Sbjct: 227 VVL----ATKYPQGGEKQLIKAVTG-----REVPSGGLPMDVGVI-----VNNAGTCAAI 272 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 + L+ G ++ +++G + P + + + ++IE CGG +G Sbjct: 273 ASALKTGMPLIE----------RITTVTGSGIKEPKNLLIRIGTSLIDIIE-QCGGFKG- 320 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRG---AIMDYDGLKEMGSGLGTAAVIVMDRS 326 IPG L G M G + +D +K GT+ ++V+++S Sbjct: 321 -------IPGK----VLMGGPMMGLAQSELDVPAIK------GTSGILVLEKS 356 >gi|302335611|ref|YP_003800818.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Olsenella uli DSM 7084] gi|301319451|gb|ADK67938.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Olsenella uli DSM 7084] Length = 607 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +SCG+CTPCR G + +MER++ G A++ IDL+ ++ I + CA+G A Sbjct: 50 QSCGKCTPCRIGLPALGELMERVLDGTAEEYTIDLIERTAEAIYLSSDCAIGYEAGEMAL 109 Query: 403 GLIKNFRPLIEERIDQYHRCNFQ 425 ++ FR E + ++H C F+ Sbjct: 110 EAVRGFRDDFEFHL-RHHACGFE 131 >gi|78778018|ref|YP_394333.1| glutamate synthase (NADPH) [Sulfurimonas denitrificans DSM 1251] gi|78498558|gb|ABB45098.1| Glutamate synthase (NADPH) [Sulfurimonas denitrificans DSM 1251] Length = 677 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRVM 362 YD +E + +G V + D+ D+I+ + Y+ E+CG+C P R G + + Sbjct: 35 YDSHRESKAFIGWDGVALFDKDVDVIRLAMEYAAQYQEYSEACGRCAPGRWGGRILYDQL 94 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++ +G ++D L E+ K+++ + C +G PI L+ +F + E I+++ Sbjct: 95 DKIARGEGSVADLDHLREIGKSMQITSKCEIGKTVPNPILDLMTHFEHVFLECINEH 151 >gi|120602428|ref|YP_966828.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfovibrio vulgaris DP4] gi|120562657|gb|ABM28401.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris DP4] Length = 673 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 51/100 (51%) Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G V + +++ A+W+ ESCG+CTPCR GTG + + L++ Sbjct: 46 VGDRGFFVFEPGVNLLDALWQYMERAARESCGKCTPCRVGTGIIRDSLAALLRDGVGSGG 105 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + L E+++ + ++C LG + G +++F+ ++ E Sbjct: 106 LGTLVELAEQVRSTSLCGLGRTCTVALCGALEHFQDMLVE 145 >gi|46580182|ref|YP_010990.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris str. Hildenborough] gi|46449599|gb|AAS96249.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris str. Hildenborough] gi|311233827|gb|ADP86681.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris RCH1] Length = 673 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 51/100 (51%) Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G V + +++ A+W+ ESCG+CTPCR GTG + + L++ Sbjct: 46 VGDRGFFVFEPGVNLLDALWQYMERAARESCGKCTPCRVGTGIIRDSLAALLRDGVGSGG 105 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + L E+++ + ++C LG + G +++F+ ++ E Sbjct: 106 LGTLVELAEQVRSTSLCGLGRTCTVALCGALEHFQDMLVE 145 >gi|153872669|ref|ZP_02001494.1| Electron transport complex protein rnfC [Beggiatoa sp. PS] gi|152070866|gb|EDN68507.1| Electron transport complex protein rnfC [Beggiatoa sp. PS] Length = 446 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 105/258 (40%), Gaps = 52/258 (20%) Query: 41 DWI-------INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 DW+ IN V+ +G+ G GGA F + +K++ +P + +LV+N E EP Sbjct: 123 DWMALSIEEFINHVQKAGIVGMGGAAFPSHVKYA-LPDGMQIK--HLVINGAECEPYLTN 179 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 D +M P TL+ G I +GA A I V +LQ +D+ + Sbjct: 180 DHRLMLERPDTLLRGIEIVRQKLGATQATIGVELNKTDAINTLQKHIDQQQIKNIRMVPL 239 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESL---EGKKGQPRLKPPFPANVGLYGCPTTVNN 210 ++ Y G E +++SL E GQ P +VG+ TVNN Sbjct: 240 RVKYPQ-------------GAEKMMIKSLFNIEIPPGQ------LPRDVGV-----TVNN 275 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269 V +I + G ++ ++SG V P + + E++ + Sbjct: 276 VSTIVAIADYFETGMPLIE----------RIVTVSGPGVEQPANLMVPLGTPAREVL-RF 324 Query: 270 CGGIRGGWDNLLAVIPGG 287 CGG++ + +VI GG Sbjct: 325 CGGLK---ETTRSVIMGG 339 >gi|88859825|ref|ZP_01134464.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata D2] gi|88817819|gb|EAR27635.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata D2] Length = 872 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 D LE IIN+++++G+ G GGAGF+T +K + K+ YL+VN E EP Sbjct: 126 DNYLELCASEIINKIRSAGISGMGGAGFATYVKAQPLQKI-----DYLIVNGVECEPYIT 180 Query: 93 KDRDIMRHEPHTLIEGCVIASFAI 116 D +M+ T+IEG +I + + Sbjct: 181 SDDRLMQEHATTIIEGSLILAHVL 204 >gi|34556902|ref|NP_906717.1| formate dehydrogenase, BETA subunit (formatedehydrogenase [NADP+]) [Wolinella succinogenes DSM 1740] gi|34482617|emb|CAE09617.1| FORMATE DEHYDROGENASE, BETA SUBUNIT (FORMATEDEHYDROGENASE [NADP+]) [Wolinella succinogenes] Length = 649 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G A V++ D + D+I + Y+ E+CG+C P + G + ++E++ +G ++ Sbjct: 30 IGWAGVMIYDPTLDVIALAKEYARQYQCFAETCGRCAPGKFGGKILFDLLEKIDQGRGEE 89 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +++ L EV K + + C +G PI L++ +RPL E + R Sbjct: 90 SDLERLVEVGKLMMTTSKCEVGKTTPLPILDLLEAYRPLFVEALGNRSR 138 >gi|225386798|ref|ZP_03756562.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme DSM 15981] gi|225047114|gb|EEG57360.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme DSM 15981] Length = 441 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 100/267 (37%), Gaps = 52/267 (19%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG K R +L+VN E EP DR +MRH +I + +GA Sbjct: 20 FPTGKKLDC-------RVEWLIVNGAECEPLLRTDRYLMRHNAERVIRAAGAVARMVGAK 72 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++ + +E ++L+AA L + G I + Y G+E L+ Sbjct: 73 HCVIALKRAYTQEWKALEAA---------LAGDGPEGGTALIELFPLDSFYPAGDEQVLV 123 Query: 180 ESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 + R+ PP P +VG C N S A+ L + Sbjct: 124 YEV-----TERVVPPAGIPLDVGAVVCNLATMNAISDAMDGIPLTK-------------- 164 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 K +++G V P V + F+E I G + + VI GG Sbjct: 165 --KYITVTGEVKCPSIVRAPVGTPFEECIRLAGGSKKERY----CVIDGGP--------- 209 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMD 324 M G IMDY+ +E T+ +IV+D Sbjct: 210 MMGKIMDYEAAREEAVTKTTSGLIVLD 236 >gi|95928557|ref|ZP_01311304.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfuromonas acetoxidans DSM 684] gi|95135347|gb|EAT16999.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfuromonas acetoxidans DSM 684] Length = 651 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 310 EMGSGLGTAAVIVMDRSTDIIK--AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 ++G+ +G V+++D TD++ A + V KH CG+CTP ++GT M + R+++ Sbjct: 39 KVGAFMGWDGVVLLDGETDVVAMAAEYMKRVQEKH-CCGKCTPGKKGTRVMQDTLARILQ 97 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 G ++R+++++ + +EG C L +A P+ +K FR Sbjct: 98 GHGEERDLEIIENLKSLLEG-CKCTLCMTSAIPVLDTVKYFR 138 >gi|317471774|ref|ZP_07931113.1| electron transport complex [Anaerostipes sp. 3_2_56FAA] gi|316900751|gb|EFV22726.1| electron transport complex [Anaerostipes sp. 3_2_56FAA] Length = 438 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 38/244 (15%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 RD ++ +K +G+ G GGAGF T +K + PK D Y++VN E EP D IM Sbjct: 120 RDEVLAAIKDAGIVGLGGAGFPTHVKLA--PKD-PDAIEYIIVNGAECEPYITGDYRIMM 176 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 P L+EG I I V ++ A V +C D Sbjct: 177 ETPEVLVEGLNIVLDLFPKAKGIIAVE----DNKKDAIAKVSDCVKG-----------DA 221 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y G E +L+ + G+ + PA+ G V+NV +I V Sbjct: 222 RISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAGCI-----VDNVATIVAVKD 273 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 ++ G + ++ +++G + P + ELIE GG +G + Sbjct: 274 AVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIE-AAGGFKGQPE 322 Query: 279 NLLA 282 +++ Sbjct: 323 KVIS 326 >gi|294678805|ref|YP_003579420.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB 1003] gi|17380290|sp|Q52716|RNFC_RHOCA RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|435525|emb|CAA51399.1| rnfC [Rhodobacter capsulatus] gi|1905810|emb|CAA72670.1| RnfC protein [Rhodobacter capsulatus] gi|294477625|gb|ADE87013.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB 1003] gi|742355|prf||2009377B rnfC protein Length = 519 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 39/243 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 + I +V A+G+ G GGA F + +K + K L++N E EP TC DR +MR Sbjct: 136 EEIAAQVAAAGIVGMGGATFPSAVKLNLRAKYDLT---TLIINGAECEPYLTCDDR-LMR 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + +G I + A+G F+ + + E++ N LGY Sbjct: 192 ERAEEIADGIGIMARALGVKQVFVAIESNKPQAIEAMTR------------YNRALGYTF 239 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I H Y G E L++ + G++ R A++G+ V+N+ + V Sbjct: 240 KI--HVVPTQYPMGSEKHLVKMITGQETPARA---LTADLGV-----VVHNIATAHAVHL 289 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G + + ++SGH + P + + E+I HCGG D Sbjct: 290 AVRYGEPLIA----------RTVTVSGHGIRRPANLRVLIGTPVSEII-AHCGGFTEEPD 338 Query: 279 NLL 281 LL Sbjct: 339 RLL 341 >gi|330884893|gb|EGH19042.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. race 4] Length = 42 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/38 (57%), Positives = 27/38 (71%) Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 PR KPPFPA VG++G PT VNNVE++ VP I+ G Sbjct: 4 ANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNG 41 >gi|289449574|ref|YP_003475793.1| putative electron transport complex protein RnfC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184121|gb|ADC90546.1| putative electron transport complex protein RnfC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 449 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 38/246 (15%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIM 98 RD I ++ SGL G GGAGF T +K + D P LV+NA E EP D M Sbjct: 127 RDEFIAAIQQSGLVGLGGAGFPTHVKL----RAPKDHPFEILVINAAECEPYLTVDYRAM 182 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 L+ G I A ++ + I ++ + AV + + L S + + Sbjct: 183 LDNTDNLLAG-------IAAVTKYLDIPRVVIGTEDNKKDAVTKLLQA--LRSEAGDAIN 233 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAV 216 D+ + Y G E L+ + G++ P PANVG V NV S+A Sbjct: 234 ADVEIMALPSRYPQGAEKTLIYAATGRR-----VPAGGLPANVG-----CVVMNVTSVAF 283 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V LR G + K ++ G + +P + + +++E CGG+ G Sbjct: 284 VGDYLRTGHPLVA----------KNITVDGDIIAHPQNIRAVIGTPIKDIVE-FCGGLTG 332 Query: 276 GWDNLL 281 +L Sbjct: 333 EPSKIL 338 >gi|302389136|ref|YP_003824957.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermosediminibacter oceani DSM 16646] gi|302199764|gb|ADL07334.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermosediminibacter oceani DSM 16646] Length = 441 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 53/277 (19%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 ++ N E EP ++ +++H P +++G IA A GA I ++ ++ R+SL+ Sbjct: 37 VIANMAECEPLLFTNQALIQHHPDEVLQGLQIAMQATGAKKGVIALKKKYEACRKSLEG- 95 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 K+GY +I++H Y G+E +++ + K+ P P++V Sbjct: 96 --------------KIGYYENIVIHELEDFYPAGDEHVMVKEVL-KRTIPM--SGIPSDV 138 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G V+NVE++ + R G F +++G V +P V+ + Sbjct: 139 G-----AVVHNVETLYNIKRAYRDGKPVTEKF----------VTVAGAVRHPLVVKVPIG 183 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY-DGLKEMGSGLGTA 318 + F EL++ + GG P + G M G+ +D D + + S L Sbjct: 184 LRFSELLD-----LAGG--------PAVKDYILVHGGPMMGSEVDAGDTVTKTTSAL--- 227 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCRE 353 +++ D + I R+ V K +C QC C + Sbjct: 228 -LVIPDGAFPHISRRARMEVLLKRAKAACCQCRICTD 263 >gi|160879334|ref|YP_001558302.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridium phytofermentans ISDg] gi|160428000|gb|ABX41563.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium phytofermentans ISDg] Length = 442 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 41/227 (18%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 VK G+ G GGAGF T K+S ++ +++N E EP R ++R + ++ Sbjct: 11 VKEYGICGAGGAGFPTYAKFS-------NKVDTIILNCAECEPLLKLHRQLLRDRAYEVL 63 Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 + I + +IGA A I V+ Y + + +++G ++ + Sbjct: 64 KAFSIIAESIGAKEAIIVVKPS---------------YKNTIAAVEAEIGAYKNMSLKLC 108 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 Y G+E L+ G+ +P P ++G+ V NVE++ V Sbjct: 109 KEVYPAGDEVVLIYEATGRVVKPG---GLPVDIGV-----AVFNVETVYNV--------- 151 Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 Y +KL S+ G V P TV + +T E++E GGI Sbjct: 152 -YEAVINHRPVTSKLVSVVGEVKEPKTVRVPLGMTVKEVVE-MVGGI 196 >gi|224369753|ref|YP_002603917.1| GltD1 [Desulfobacterium autotrophicum HRM2] gi|223692470|gb|ACN15753.1| GltD1 [Desulfobacterium autotrophicum HRM2] Length = 659 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 ++ +++ A+ + ESCG+CTPCR GT + +E LV A +D + +++ Sbjct: 55 EKKVNLLDALLQYMERVAKESCGKCTPCRVGTQIIRHKLEDLVNRKADAEALDEIAVIAE 114 Query: 384 NIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++C LG A + ++ +FR Sbjct: 115 HVRDTSLCGLGQTATVALLEVLAHFR 140 >gi|255994383|ref|ZP_05427518.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium saphenum ATCC 49989] gi|255993096|gb|EEU03185.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium saphenum ATCC 49989] Length = 448 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 101/254 (39%), Gaps = 38/254 (14%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + V K K + I V+ASG G GGA F T +K F PK D L++NA E EP Sbjct: 120 EEVKKPEVKDFESFIAAVRASGAVGLGGAAFPTHIK--FNPKNI-DEVDTLIINAAECEP 176 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M +P +++G I +G A I + E L + + Sbjct: 177 FITADHRLMLEDPVDILDGIEITMRYMGIKRAIIGIESNKPNAIEVLNSEI--------- 227 Query: 150 GSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 S KL G + ++ Y G E L G+K + PA++GL + Sbjct: 228 -SKRKLDGVSIKVL----QSRYPQGAERVLAYEATGRKLDAGV---LPADIGL-----II 274 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 NV +IA + +R G + K ++ G VN P V ++ +LI Sbjct: 275 TNVATIAFIGQYMRNGIPLIN----------KRLTVDGDAVNTPQNVIVAIGTPIKDLIA 324 Query: 268 KHCGGIRGGWDNLL 281 CGG + +L Sbjct: 325 A-CGGYKKHPKKIL 337 >gi|261880457|ref|ZP_06006884.1| electron transport complex [Prevotella bergensis DSM 17361] gi|270332796|gb|EFA43582.1| electron transport complex [Prevotella bergensis DSM 17361] Length = 449 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 38/269 (14%) Query: 16 QGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 +G +S+ R + ++ E + IIN +K +G+ G GGAGF T +K P Sbjct: 102 EGDEWEESIDRSEKLETLNSHPELTSEDIINRLKVAGVTGMGGAGFPTFIKLMPPP---G 158 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +++N E EP D +M +I G + ++ A+I Sbjct: 159 AKAECIIINGVECEPYITSDYRLMMEHADEIIVGVQLLMKSVHVDKAYI----------- 207 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++E + K D I V A Y G E L+ ++ G+ + P Sbjct: 208 ----GIEENKPKAIALMTEKAASDSRIKVVPLAQKYPQGGEKQLVAAVIGR--EVPAPPA 261 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 P NVG +P + + Y + + S+SG + +P Sbjct: 262 IPVNVG---------------AIPVNVGTTFAVYQAVMKNKPLFERYTSVSGKQIKHPGN 306 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLA 282 M +F +LIE CGG+ G + +LA Sbjct: 307 FLVRMGTSFGQLIEA-CGGMPDGDNKVLA 334 >gi|312143455|ref|YP_003994901.1| electron transport complex, RnfABCDGE type, C subunit [Halanaerobium sp. 'sapolanicus'] gi|311904106|gb|ADQ14547.1| electron transport complex, RnfABCDGE type, C subunit [Halanaerobium sp. 'sapolanicus'] Length = 443 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 114/286 (39%), Gaps = 60/286 (20%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 K +SD + DN+ D I N V+ +G+ G GGA F T +K S V D+ Sbjct: 108 KLVSDLEKHQNLDNL------SPDEIRNIVREAGIVGLGGAMFPTHVKLS----VPEDKN 157 Query: 78 -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+++N E EP D +M P+ ++ G A+ A I + + ES+ Sbjct: 158 VEYVILNGAECEPYLTVDHRVMVERPNAIVFGLKALMKAVNAEKGLIGIEDNKMEAVESM 217 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 Q AV + + +I + Y G E L+E+L ++ Sbjct: 218 QDAVAD---------------EDNIEIKIVETKYPQGGEKMLIEALLDRE---------- 252 Query: 197 ANVGLYGCP----TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYP 251 V + G P VNN + A V +R G + SI+G + P Sbjct: 253 --VPVGGLPLDIEVVVNNTSTAAAVADAIREGKPLID----------RSISITGRGIESP 300 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 C + + +L+E+ GG++ ++ + VI GG P + A Q Sbjct: 301 CNLIYRIGTKLSDLVEQ-AGGLK---EDAVKVIAGG---PMMGAAQ 339 >gi|315924585|ref|ZP_07920804.1| Na(+)-translocating NADH-quinone reductase subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315622115|gb|EFV02077.1| Na(+)-translocating NADH-quinone reductase subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 410 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 47/252 (18%) Query: 30 DNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 D VD ++ D+ IIN +K +G+ G GGA F T +K + P D +++ Sbjct: 69 DTVDPAIKPYGDYQQYSSSEIINIIKEAGIVGLGGATFPTHVKLTVSPDKHVDS---VIL 125 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N E EP D +M+ P +I G IA A+ +I + + +++ A V Sbjct: 126 NGAECEPYLTADDHLMQDRPEKVIAGLHIAMRALDVSKGYIAIED---NKPDAINAIVGV 182 Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 C D + V Y G E L+ ++ G R P PA+ G Sbjct: 183 CKG------------DDAVEVIRLKTKYPQGAEKQLITAVTG-----REVPSGGLPADAG 225 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 + V NV + A V T G Y + + V P T+E + + Sbjct: 226 V-----VVMNVGTAAQVATTFETGMPLYKRY---------VTCTGDVVKNPATLEVLVGM 271 Query: 261 TFDELIEKHCGG 272 ++ E+I++ CGG Sbjct: 272 SYQEVIDE-CGG 282 >gi|313900436|ref|ZP_07833929.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. HGF2] gi|312954498|gb|EFR36173.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. HGF2] Length = 610 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 337 SVFYK---HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 S F K ++CG+C PCR G + ++E +++G A IDL+ + ++NI CA+ Sbjct: 41 SAFLKLCHAQTCGKCVPCRIGLAQLQMLLEDVLEGRAALSTIDLIEKTAQNISWSADCAI 100 Query: 394 GDAAAWPIQGLIKNFRPLIEERI 416 G AA + ++ FR EE I Sbjct: 101 GQEAADMVLKGVQGFRDDYEEHI 123 >gi|332296329|ref|YP_004438252.1| methyl-viologen-reducing hydrogenase delta subunit [Thermodesulfobium narugense DSM 14796] gi|332179432|gb|AEE15121.1| methyl-viologen-reducing hydrogenase delta subunit [Thermodesulfobium narugense DSM 14796] Length = 274 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 52/100 (52%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+ L + +G+A + D + +++ + + + SCG+C PCR G+ M ++ Sbjct: 141 IDWATLSRTIAVVGSAGKLFWDENKCMVEMVDFFLDYTQKNSCGECVPCRIGSKRMQEIV 200 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +++ G + EI +L E+S+ I + C LG A ++ Sbjct: 201 KKISNGSVSEEEISILNELSEVIGASSKCDLGKMAGKAVK 240 >gi|330860332|emb|CBX70645.1| hypothetical protein YEW_HF31200 [Yersinia enterocolitica W22703] Length = 88 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 20/29 (68%), Positives = 26/29 (89%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPK 71 +++ VK +GL+GRGGAGFSTG+KWS MPK Sbjct: 57 VVSLVKDAGLKGRGGAGFSTGLKWSLMPK 85 >gi|152993803|ref|YP_001359524.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Sulfurovum sp. NBC37-1] gi|151425664|dbj|BAF73167.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Sulfurovum sp. NBC37-1] Length = 669 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRVM 362 Y G K + +G V + D + D ++ + + Y+ E+CG+C P R G + ++ Sbjct: 35 YHGEKNSKAFIGWDGVAIFDENIDAVELASKYAAQYQEYSEACGRCAPGRWGGRILYDLL 94 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +++ +G +I L E+SK + + C +G PI L++ ++ DQ+ C Sbjct: 95 DKIARGEGSHDDIAHLKEISKTMMATSKCEIGKTVPKPILDLMEYYK-------DQFDTC 147 >gi|302341925|ref|YP_003806454.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfarculus baarsii DSM 2075] gi|301638538|gb|ADK83860.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfarculus baarsii DSM 2075] Length = 641 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 18/131 (13%) Query: 285 PGGSSVPC--LPA----GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 PG VP LPA G+ A M +DGL + D S D++ Sbjct: 14 PGREQVPTDQLPAEFAAGRPLRAFMGWDGL------------FIHDESVDLVDMARAYMD 61 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + ESCGQC PCR G M +++ L G ++D L +++ + + C +G Sbjct: 62 QAQKESCGQCFPCRLGVKAMSAILDGLCAGKGAPADLDRLESLARFVSRASRCDIGQTTP 121 Query: 399 WPIQGLIKNFR 409 PI L+ + R Sbjct: 122 RPILDLLTHRR 132 >gi|331001661|ref|ZP_08325184.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413382|gb|EGG92749.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon 107 str. F0167] Length = 448 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I VK +G+ G GGAGF T +K S PK D +Y++VN E EP D +M Sbjct: 123 KDKIRKIVKDAGIVGLGGAGFPTHVKIS--PK-NEDEINYIIVNGAECEPYLTSDYRLMM 179 Query: 100 HEPHTLIEGCVI 111 EP +IEG I Sbjct: 180 EEPKKIIEGLKI 191 >gi|289423989|ref|ZP_06425778.1| FAD dependent oxidoreductase [Peptostreptococcus anaerobius 653-L] gi|289155564|gb|EFD04240.1| FAD dependent oxidoreductase [Peptostreptococcus anaerobius 653-L] Length = 610 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G G + +ME+++ A + IDL+ E S+ I CA+G AA + Sbjct: 50 QTCGKCVPCRIGLGKLKELMEKVLSSEADESTIDLIEETSRVIMETADCAIGTEAAEMVL 109 Query: 403 GLIKNFR 409 + FR Sbjct: 110 KGVMGFR 116 >gi|332879376|ref|ZP_08447073.1| electron transport complex, RnfABCDGE type, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682796|gb|EGJ55696.1| electron transport complex, RnfABCDGE type, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 447 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 48/265 (18%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+N+VKA+G+ G GGA F +K + PK + +++NA E EP D +M +P Sbjct: 128 IVNKVKAAGIVGMGGATFPCHVKLT-PPK--GTKAECVIINAVECEPYLTADHRLMLEKP 184 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ G + A+G +I + ++ A LL +K ++I+ Sbjct: 185 DEILVGVDLIMKAVGVDKGYIGIEN-------------NKPDAIALLTEKAKAYSHIEIV 231 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 Y G E L+ ++ G+ + P P NVG V NV ++ + Sbjct: 232 PLQ--VKYPQGGEKQLIAAVTGR--EVPAPPALPINVG-----AVVQNVGTVFAI----- 277 Query: 223 RGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 Y + ++ +++G V P + + ++LIE CGG+ +N Sbjct: 278 -----YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIE-ECGGLP---ENTG 328 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYD 306 VI GG M A+M+ D Sbjct: 329 KVIGGGP--------MMGKALMNLD 345 >gi|288942376|ref|YP_003444616.1| RnfABCDGE type electron transport complex subunit C [Allochromatium vinosum DSM 180] gi|288897748|gb|ADC63584.1| electron transport complex, RnfABCDGE type, C subunit [Allochromatium vinosum DSM 180] Length = 504 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 62/262 (23%), Positives = 101/262 (38%), Gaps = 43/262 (16%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 H V+ + I V A+G+ G GGA F + +K + H LV+N E Sbjct: 112 HIQGVEDPFALAPEEIAARVAAAGIVGLGGATFPSAVKLDLRKRYAV---HTLVINGAEC 168 Query: 88 EPG-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EP TC DR +MR ++I+G + + A+G I +++ Sbjct: 169 EPYLTCDDR-LMRERAESVIDGIRLMARALGVSRIVI---------------GIEDNKPE 212 Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 D DI + Y G E L+++L G++ R A++G+ Sbjct: 213 AQAAMAVAASIDPDIRIARLPTRYPMGSEKHLVQTLTGRETPARG---LTADIGV----- 264 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDEL 265 V+N + V LR G + ++ ++S G + P V + +L Sbjct: 265 VVHNPATAFAVHEALRLGHPLVA----------RVVTVSGGAIARPANVRVPLGTRVQDL 314 Query: 266 IEKHCGGIRGGWDNLLAVIPGG 287 I HCGG + D +I GG Sbjct: 315 I-AHCGGFK---DEPARLISGG 332 >gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like protein [Clostridium ljungdahlii DSM 13528] gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like protein [Clostridium ljungdahlii DSM 13528] Length = 926 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 45/78 (57%) Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 + +SCG+CT CREG + + + ++KG ++K ++ ++ E++ ++ C+LG + P Sbjct: 230 RKQSCGKCTFCREGLYQLDVIFDDMIKGRSEKEDLAMVEELTSAMKFSCNCSLGKCSGEP 289 Query: 401 IQGLIKNFRPLIEERIDQ 418 I F+ +E+ I + Sbjct: 290 AASAITEFKLEVEQHIKK 307 >gi|225027273|ref|ZP_03716465.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353] gi|224955426|gb|EEG36635.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353] Length = 437 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 5/84 (5%) Query: 27 GHWDNV--DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 G ++ V + EK + IIN VK +G+ G GGAGF T +K S PK ++ +++NA Sbjct: 103 GEYETVSFQPVTEKTNEAIINAVKEAGIVGLGGAGFPTHVKLS--PKE-PEKIDTIIINA 159 Query: 85 DESEPGTCKDRDIMRHEPHTLIEG 108 E EP D M P LI G Sbjct: 160 AECEPYITADYRCMMEIPEQLISG 183 >gi|323704921|ref|ZP_08116498.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535847|gb|EGB25621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 455 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/318 (22%), Positives = 123/318 (38%), Gaps = 64/318 (20%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D + N V +G+ G GGAGF T K + +++N E EP DR ++ Sbjct: 4 DELKNIVFENGIVGAGGAGFPTHAKL-------TTGIDTIILNGAECEPLLRVDRQLLAI 56 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 ++ +GA + ++ + +AA+D L+G+ L V Sbjct: 57 YTDEILMTLSFVVDTLGARSGIVAIKSAY-------KAAIDS--VKNLIGNYKNLELKV- 106 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKP--PFPANVGLYGCPTTVNNVESIAVVP 218 Y G+E L+ G R+ P P +VG T V NVE++ Sbjct: 107 -----LPDVYPAGDEVVLIYETTG-----RIVPEGSIPISVG-----TIVMNVETV---- 147 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 + Y+ ++ K +++G+V P T + + + ELIEK G + ++ Sbjct: 148 ------LNVYNAIYLKHPVTEKYVTVTGNVKCPSTFKVKVGTSVAELIEKAGGCLEEDYE 201 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRLS 337 ++ G M G I+D ++ T A+IV+ + +I K +S Sbjct: 202 VIM-------------GGPMTGKIVD----RKAPITKTTKAIIVLPKDHPVITKRKTNIS 244 Query: 338 VFYKH--ESCGQCTPCRE 353 + K C QC C + Sbjct: 245 IELKRAMSVCSQCQMCTD 262 >gi|226941247|ref|YP_002796321.1| oxidoreductase [Laribacter hongkongensis HLHK9] gi|226716174|gb|ACO75312.1| Possible oxidoreductase [Laribacter hongkongensis HLHK9] Length = 743 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 43/88 (48%) Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 +V D + ++ A + ESCG+C PCR GT ++ +E L +G R + + E Sbjct: 122 LVFDPAASLVDAFRQYMQRAVDESCGKCAPCRIGTRKLLDELEALQRGKLTDRSLPTILE 181 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408 ++ + ++C LG + I++F Sbjct: 182 LASLVAESSLCGLGRTCTLALAAAIRHF 209 >gi|152990042|ref|YP_001355764.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Nitratiruptor sp. SB155-2] gi|151421903|dbj|BAF69407.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Nitratiruptor sp. SB155-2] Length = 680 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G A + +M D++K + Y+ E+CG+C P R G + + +++ +G +K Sbjct: 45 IGWAGIALMSDDVDVVKLATEYAKQYQVYSEACGRCAPGRWGGRILYDLFDKIARGEGEK 104 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ L EVSK + + C +G P+ ++++F I++ I Sbjct: 105 SDVEHLKEVSKTMMETSKCEIGRTVPKPLLDILEHFSDEIDDLI 148 >gi|83311714|ref|YP_421978.1| electron transport complex protein rnfC [Magnetospirillum magneticum AMB-1] gi|82946555|dbj|BAE51419.1| Electron transport complex protein rnfC [Magnetospirillum magneticum AMB-1] Length = 498 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 45/286 (15%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKA----SGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 DS + W ++ NE+KA +G+ G GGA F + +K + + Sbjct: 102 DSDGKDEWAEPMPVIADPFAASANEIKARVAEAGIVGMGGATFPSAVKLGLGNQ---HKL 158 Query: 78 HYLVVNADESEPG-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 L++N E EP TC DR +MR +++G I + A+GA I V + +SL Sbjct: 159 EILLLNGAECEPYLTCDDR-VMREFAEQVVDGARIMAHALGAPKVIIAVEDNKPQAVDSL 217 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 +A + ++G + Y G E L +++ G++ R Sbjct: 218 KAEAAKTPNVDVVGVPVQ---------------YPMGAERHLTQAVTGRETPAR---KLT 259 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVE 255 A+VG+ V+NV + V +R G S ++ ++S G V P +E Sbjct: 260 ADVGV-----VVHNVATARAVHQAVRLGRPLLS----------RVVTVSGGAVAEPKNIE 304 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRG 300 + EL++ CGG+ +++ P G +P L ++G Sbjct: 305 VPLGTRVSELLD-FCGGVSAAAKRIISGGPMMGQPLPSLDVAVVKG 349 >gi|315925372|ref|ZP_07921583.1| propanediol utilization protein PduS [Pseudoramibacter alactolyticus ATCC 23263] gi|315621273|gb|EFV01243.1| propanediol utilization protein PduS [Pseudoramibacter alactolyticus ATCC 23263] Length = 456 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 26/156 (16%) Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y +VNA E EP D+ R + ++ G ++A+ A+ A I ++ + RE ESLQ Sbjct: 31 EYFIVNALECEPLIAVDKYCCREQSEQIVAGTLLAAAAVNAQHIVIALKKTYRREIESLQ 90 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK----KGQPRLKP 193 AA++ AS I + A Y G+E +++++ GK +G P Sbjct: 91 AAINAAGAS--------------IELFKMAPFYPAGDEQIVVQAVTGKSIPERGLPSAVG 136 Query: 194 PFPANVGLY--------GCPTTVNNVESIAVVPTIL 221 NVG G P T + I VP L Sbjct: 137 AVVDNVGTVCGIAQAAAGAPVTQKTLSVIGAVPKPL 172 >gi|323142352|ref|ZP_08077184.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium sp. YIT 12067] gi|322413236|gb|EFY04123.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium sp. YIT 12067] Length = 668 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G + +ME ++ G A +DL+ ++N+ CA+G AA + Sbjct: 102 QTCGKCVPCRVGLAQLQNLMEDVLAGKADMHTLDLIESTAQNVANSADCAIGFEAAKMVL 161 Query: 403 GLIKNFR 409 ++ FR Sbjct: 162 AGLEGFR 168 >gi|167746962|ref|ZP_02419089.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662] gi|167653922|gb|EDR98051.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662] Length = 438 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 44/247 (17%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRD 96 RD ++ +K +G+ G GGAGF T +K + PK P Y++VN E EP D Sbjct: 120 RDEVLAAIKDAGIVGLGGAGFPTHVKLA--PK----DPGAIEYIIVNGAECEPYITGDYR 173 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 IM P L+EG I I V ++ A V +C Sbjct: 174 IMMETPEVLVEGLNIVLDLFPKAKGIIAVE----DNKKDAIAKVSDCVKG---------- 219 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I V Y G E +L+ + G+ + PA+ G V+NV +I Sbjct: 220 -DARISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAGCI-----VDNVATIVA 270 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V ++ G + ++ +++G + P + ELIE GG +G Sbjct: 271 VKDAVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIE-AAGGFKG 319 Query: 276 GWDNLLA 282 + +++ Sbjct: 320 QPEKVIS 326 >gi|269120526|ref|YP_003308703.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sebaldella termitidis ATCC 33386] gi|268614404|gb|ACZ08772.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sebaldella termitidis ATCC 33386] Length = 444 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 117/283 (41%), Gaps = 46/283 (16%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VN E EP D+ +MR + + LI+G I + + A + ++ ++ E + L Sbjct: 33 FIVNGAECEPLLEVDKFLMREKTYELIKGMEIIAGNLKAARVVLGLKKKYKVEIKKLSET 92 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + E L SN +L + +D Y G+E +++ + GK PA Sbjct: 93 IKE------LDSNVEL-FLMD-------NFYPAGDEQIMVKDITGKS--------IPAG- 129 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G P V+ V ++ V T++ + Y E K S+ G VN P +E + Sbjct: 130 ---GIPLDVDTV--VSNVGTVI----NVYEAI-EEKPVTKKYVSVLGEVNNPVMLEVPIG 179 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 +F+E I K GG++ N AVI GG M G I+ D L E T A Sbjct: 180 TSFEECI-KRAGGVK--IKNY-AVIEGGP---------MMGKIVHRDELAEKAVIKTTGA 226 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +I++ +IK R +ES C CR T R + Sbjct: 227 LIILPEDHYVIKRKERPEAHILNESRAACIQCRMCTDMCPRYL 269 >gi|295092894|emb|CBK81985.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus sp. ART55/1] Length = 441 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 38/247 (15%) Query: 31 NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90 NV + R+ + +K +G+ G GGAGF +K S PK D Y++VN E EP Sbjct: 113 NVKDLSTLYREDVKEIIKEAGIVGMGGAGFPANVKLS--PK-NEDAIDYIIVNGAECEPY 169 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 D M EP LI G I C ++ + I A+++ + Sbjct: 170 LTSDYRRMMEEPDKLILGLEI--------CINLFDHAKGI-------IAIEDNKPEAIEL 214 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 K+ + I VH Y G E L+ + G+ ++ PA+ G V+N Sbjct: 215 LRDKVKDNDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVHN 266 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269 V++I + + G Y T++ +I+G + PC + + ELIE Sbjct: 267 VDTIVSIYEAVIEGRPLY----------TRIVTITGDAIENPCNLMVRIGTNCQELIEA- 315 Query: 270 CGGIRGG 276 GG + G Sbjct: 316 AGGFKDG 322 >gi|163816427|ref|ZP_02207791.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759] gi|158448127|gb|EDP25122.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759] Length = 441 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 38/247 (15%) Query: 31 NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90 NV + R+ + +K +G+ G GGAGF +K S PK D Y++VN E EP Sbjct: 113 NVKDLSSLYREDVKEIIKEAGIVGMGGAGFPANVKLS--PK-NEDAIDYIIVNGAECEPY 169 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 D M EP LI G I C ++ + I A+++ + Sbjct: 170 LTSDYRRMLEEPDKLILGLEI--------CINLFDHAKGI-------IAIEDNKPEAIAI 214 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 + K+ + I VH Y G E L+ + G+ ++ PA+ G V+N Sbjct: 215 LSDKVKDNDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVHN 266 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269 V++I + + G YS ++ +I+G + PC + ELIE Sbjct: 267 VDTIVSIYEAVVEGRPLYS----------RIVTITGDAIENPCNLMVRTGTNCQELIEA- 315 Query: 270 CGGIRGG 276 GG + G Sbjct: 316 AGGFKDG 322 >gi|310828230|ref|YP_003960587.1| RnfC [Eubacterium limosum KIST612] gi|308739964|gb|ADO37624.1| RnfC [Eubacterium limosum KIST612] Length = 446 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 42 WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 II+ ++ +G+ G GGA F T +K S P D +++N E EP D +M Sbjct: 128 QIIDIIRDAGIVGMGGATFPTHVKLSIPPDKTVDS---VILNGAECEPYLTADHHLMLAR 184 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 P +++G IA A+G +I V E L+ A+ E Sbjct: 185 PKRIVQGLRIAMRAVGVDKGYIGVESNKPNAIEKLRKAITE 225 >gi|240276237|gb|EER39749.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Ajellomyces capsulatus H143] Length = 109 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 24/42 (57%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWI 43 L DQDRIF NLYG G L +M G W I+ KG DW+ Sbjct: 62 LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWV 103 >gi|309389502|gb|ADO77382.1| electron transport complex, RnfABCDGE type, C subunit [Halanaerobium praevalens DSM 2228] Length = 441 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 48/254 (18%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGA F T +K + D Y+++N E EP D +M P +++ Sbjct: 129 IREAGIVGMGGAMFPTHVKVTIPEDKNVD---YVILNGAECEPYLTVDHRVMVERPESIV 185 Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 G A GA A I + + E++ + D C + +I V Sbjct: 186 FGLKALMKASGAPKAIIGIED---NKPEAIASMEDACESEN------------NIKVQAV 230 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTILRRG 224 Y G E L+E+L G R P P +VG+ VNN + A V +R G Sbjct: 231 ETKYPQGGEKMLIEALIG-----REVPAGGLPLDVGV-----VVNNTSTSAAVADAIRDG 280 Query: 225 ASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283 Y + SI+G +N P + + +L+E+ GG++ DN V Sbjct: 281 KPLYE----------RSISITGRGINKPQNLIFRVGTNIGDLVEE-AGGLK---DNAAKV 326 Query: 284 IPGGSSVPCLPAGQ 297 I GG P + A Q Sbjct: 327 ITGG---PMMGAAQ 337 >gi|220904811|ref|YP_002480123.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869110|gb|ACL49445.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 618 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 49/101 (48%) Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G ++V D + D++ + ESCGQC PCR G + ++ L +G A+ + Sbjct: 20 MGWGGLVVSDETVDVLDMLRAYYEGAAAESCGQCFPCRSGLKRIAERLDSLCRGKARPDD 79 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + L E++ + C +G + P+ ++ + L+E R Sbjct: 80 REYLQELAALVYDSARCDIGQTSPQPLLDVLAHAPHLLEAR 120 >gi|224369472|ref|YP_002603636.1| RnfC1 [Desulfobacterium autotrophicum HRM2] gi|223692189|gb|ACN15472.1| RnfC1 [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 + M+ W ++ I + D I + A+G+ G GGA F T +K K D L+ Sbjct: 122 EEMTSTDW-SLSTIPDYSPDEIARLIHAAGIVGLGGAAFPTHVKVMPNDKRLIDS---LL 177 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 VN E EP D +M+ PH ++ G ++A A+ A FI + E+L+ A Sbjct: 178 VNGCECEPYLTCDYRLMKEAPHAIVAGALLAGRAVSAKEIFICIEDNKPEAIEALELA 235 >gi|118602191|ref|YP_903406.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567130|gb|ABL01935.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 497 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 21/142 (14%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ ++ SG+ G GGAGF T +K + K C H L++N E EPG D +M+ P Sbjct: 126 MIDCIQKSGIVGLGGAGFPTHVKLGKI-KQC----HTLIINGTECEPGVMCDNALMQFYP 180 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 +I G I + GA A I + + ++ + QA + + N ++ Sbjct: 181 REIIRGVEILLYICGAERAIIAIEDD---KQVAYQALL-------MFNHNDRIS------ 224 Query: 163 VHHGAGAYICGEETALLESLEG 184 ++ + Y G E L+++L G Sbjct: 225 INQISTKYTSGAEKLLIKALLG 246 >gi|227484615|ref|ZP_03914931.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus lactolyticus ATCC 51172] gi|227237335|gb|EEI87350.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus lactolyticus ATCC 51172] Length = 451 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 39/249 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIMR 99 + I+ +VK +G+ G GGA F +K+S ++P ++VN E EP D IM+ Sbjct: 132 EEIVAKVKEAGIVGMGGAAFPAHVKYS------PNKPIDTVIVNGAECEPYITCDDYIMK 185 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + P +I+G + A+ A I + +S+ A+ E + +D Sbjct: 186 NYPLHIIKGLIQVLKAVNAKEGVIAIENNKPAAYKSMTEALAEFAKTN--------KFDG 237 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y G+E L+ ++ K+ P P +VG V+NV ++ + Sbjct: 238 TIKVVSLETKYPQGDEKRLINAIL-KREVPSGG--LPMDVG-----AVVSNVSTVNAIYE 289 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 L G Y ++ +++G V P + + +F++LIE+ GG + Sbjct: 290 ALYMGKPLYE----------RILTVTGRTVKNPQNMRVRIGTSFNDLIEE-----AGGAE 334 Query: 279 NLLAVIPGG 287 + VI GG Sbjct: 335 EIAKVINGG 343 >gi|157363153|ref|YP_001469920.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga lettingae TMO] gi|157313757|gb|ABV32856.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga lettingae TMO] Length = 437 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 119/280 (42%), Gaps = 56/280 (20%) Query: 6 DRIFTNLYGLQGKSLS----DSMSRGHWDNVD-KILEK-GRDWIINEVKASGLRGRGGAG 59 D+++ + LQGK + + S W+ +D K EK R+ ++ VK +G+ G GGA Sbjct: 84 DKVY---HPLQGKPMEAVVIERTSEDDWEYLDHKDWEKLSREELLEVVKKAGIVGLGGAM 140 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K + PK + L++NA E EP D +M + IEG I + Sbjct: 141 FPTHVKLN-PPK--DKKIDTLIINAAECEPYLTIDHRLMLEKAEDFIEGIRIVMKILQVQ 197 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +F+ V + + L++ V GS +I V Y G E L+ Sbjct: 198 KSFVGVESNKLDAYKHLKSIV---------GSE-------EIEVKLLKTKYPQGAEKQLI 241 Query: 180 ESLEGKKGQPRLKPP---FPANVGLYGCPTTVNNVES-IAVVPTILRRGASWYSGFGREN 235 ++ G+K P P +VG+ V NV++ IA+ ++ R G Sbjct: 242 YAITGRKV------PVGGLPMDVGV-----VVQNVQTVIAIKHAVVDRKPLVERG----- 285 Query: 236 NRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 ++SG +N P V + T ++LIE GG++ Sbjct: 286 ------LTVSGEGINKPANVIARIGTTVNQLIE-LAGGLK 318 >gi|307721746|ref|YP_003892886.1| Glutamate synthase (NADPH) [Sulfurimonas autotrophica DSM 16294] gi|306979839|gb|ADN09874.1| Glutamate synthase (NADPH) [Sulfurimonas autotrophica DSM 16294] Length = 678 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVM 362 YD ++ + +G V + + D+I+ + Y+ E+CG+C P R G + + Sbjct: 35 YDDHRDSKAFIGWDGVSLFNEDVDVIRLAMEYAAQYQVYSEACGRCAPGRWGGRILYDQL 94 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++ +G + ++D L E+ K+++ + C +G PI L+ +F E I++ Sbjct: 95 DKIARGEGEIADLDHLKEIGKSMQITSKCEIGKTVPNPILDLMTHFEETFLECINE 150 >gi|322515041|ref|ZP_08068049.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC 25976] gi|322118921|gb|EFX91098.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC 25976] Length = 604 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L D II +V G+ G GGA FST K S K C L++N E EP Sbjct: 132 IDDFLTLTSDQIIQKVYQYGIAGLGGAVFSTASKLSLADKRCK----LLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ LIEG I + + + + + +++Q A L G Sbjct: 188 TCDDR-LMQDYTAELIEGIRILRYVLRPEEVVLAIEDNKPKAIKAIQKA--------LKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 S+ DI V Y G L++ L G Sbjct: 239 SD-------DIHVQPIPTKYPSGASDQLVQVLTG 265 >gi|284049282|ref|YP_003399621.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus fermentans DSM 20731] gi|283953503|gb|ADB48306.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus fermentans DSM 20731] Length = 611 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F +SCG+C PCR G G + ++E+++ A I L+ + +++I + CA+G AA Sbjct: 46 FCHAQSCGKCVPCRVGLGQLEVLIEQVLDRTASLDTITLIEKTARSIADSSDCAIGFEAA 105 Query: 399 WPIQGLIKNFRPLIEERI 416 + ++ FR EE + Sbjct: 106 SMVLKGVRGFREDYEEHV 123 >gi|194334122|ref|YP_002015982.1| electron transport complex, RnfABCDGE type subunit C [Prosthecochloris aestuarii DSM 271] gi|194311940|gb|ACF46335.1| electron transport complex, RnfABCDGE type, C subunit [Prosthecochloris aestuarii DSM 271] Length = 441 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 7/119 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ II ++K +G+ G GGAGF T +K S P D +++N E EP D +M Sbjct: 121 REEIIQKIKDAGIVGMGGAGFPTNVKLSPPPDKSIDT---IILNGAECEPFLTADHRLMV 177 Query: 100 HEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 P +I G +IAS G +FI + +++++ ASG+ + K Y Sbjct: 178 EYPKEVIAGLDIIASLFRGEAKSFIGIES---NKQDAIDTLKKHAAASGIEVVSLKTKY 233 >gi|310777823|ref|YP_003966156.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] gi|309747146|gb|ADO81808.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] Length = 436 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 26 RGHWDNVDKI--LEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 + W + KI LEK ++ ++ V+ G+ G GGA F T +K + V D L++ Sbjct: 104 KEEWAELTKIQNLEKATKEELLAMVREKGIVGVGGACFPTHIKLNPPKDVAID---VLLL 160 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N E EP D +M EPH ++EG I + +G A + + + E+++ Sbjct: 161 NGAECEPYLNSDNRLMIEEPHKIVEGIKIINKILGISRAVVGIED---NKTEAIEKMTKA 217 Query: 143 CYASGLLGSNSKLGY 157 C +G+ + K Y Sbjct: 218 CEGTGIEVAMLKTQY 232 >gi|323492348|ref|ZP_08097501.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG 20546] gi|323313395|gb|EGA66506.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG 20546] Length = 728 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 37/197 (18%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R W + + ++ D +I +++ +G+ G GGAGF T K + R L++N Sbjct: 120 LERETWPDFE---QRTPDELIEKIRQAGVSGMGGAGFPTAKKI----QSGLARTEILIIN 172 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 A E EP D +MR +I+G I + I + ++LQ A + Sbjct: 173 AAECEPYITADDVLMREHADEIIKGIEIVEHILKPKLTVIGIEDNKPEAVKALQQAAE-- 230 Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVG 200 D DII+ Y G E L++ L K+ P PA++G Sbjct: 231 --------------DKDIIIRVIPTKYPSGGEKQLIKILTNKEV------PNGGIPADIG 270 Query: 201 LYGCPTTVNNVESIAVV 217 + V NV S+ + Sbjct: 271 IL-----VQNVGSLQAI 282 >gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] Length = 792 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 N ++ +G+ G GGA F + +K + P S + H LV+N E EP D+ +M Sbjct: 117 NRIREAGIVGLGGAAFPSAVKLNPGP---SRKIHTLVINGAECEPYITCDQTLMSERADQ 173 Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 +++G IA A+G +I + E L A+ +C Sbjct: 174 VVQGIQIAMHALGVERCWIAIEDSMPTAHEGLSQAIAQC 212 >gi|167751022|ref|ZP_02423149.1| hypothetical protein EUBSIR_02007 [Eubacterium siraeum DSM 15702] gi|167655940|gb|EDS00070.1| hypothetical protein EUBSIR_02007 [Eubacterium siraeum DSM 15702] Length = 432 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D+V + R+ + V+ SG G GGAGF T +K F PK +P +L++N E EP Sbjct: 104 DSVCPPTVENREQFLQAVRNSGSIGLGGAGFPTSLKLGFDPK--EKQPDFLIINGAECEP 161 Query: 90 GTCKDRDIMRHEPHTLIEGCVI 111 D E ++EG ++ Sbjct: 162 YITSDYRCFMEEGEDVLEGVLL 183 >gi|148244308|ref|YP_001219002.1| electron transport complex protein RnfC [Candidatus Vesicomyosocius okutanii HA] gi|146326135|dbj|BAF61278.1| electron transport complex protein RnfC [Candidatus Vesicomyosocius okutanii HA] Length = 496 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%) Query: 31 NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90 NVD L ++ ++ ++ SG+ G GGAGF T +K + KV H L++N E EPG Sbjct: 114 NVD-FLHYSKETLVGIIQKSGIVGMGGAGFPTHVKIN---KVLD--CHTLIINGTECEPG 167 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 D +M+ P +I G I + GA A I + + Sbjct: 168 VMCDDALMQFYPKEIILGIEILLYICGADRAIIAIEDD 205 >gi|291556930|emb|CBL34047.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium siraeum V10Sc8a] Length = 432 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D+V + R+ + V+ SG G GGAGF T +K F PK +P +L++N E EP Sbjct: 104 DSVCPPTVENREQFLQAVRNSGSIGLGGAGFPTSLKLGFDPK--EKQPDFLIINGAECEP 161 Query: 90 GTCKDRDIMRHEPHTLIEGCVI 111 D E ++EG ++ Sbjct: 162 YITSDYRCFMEEGEDVLEGVLL 183 >gi|291530144|emb|CBK95729.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium siraeum 70/3] Length = 432 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D+V + R+ + V+ SG G GGAGF T +K F PK +P +L++N E EP Sbjct: 104 DSVCPPTVENREQFLQAVRNSGSIGLGGAGFPTSLKLGFDPK--EKQPDFLIINGAECEP 161 Query: 90 GTCKDRDIMRHEPHTLIEGCVI 111 D E ++EG ++ Sbjct: 162 YITSDYRCFMEEGEDVLEGVLL 183 >gi|317498715|ref|ZP_07957006.1| pyridine nucleotide-disulfide oxidoreductase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894009|gb|EFV16200.1| pyridine nucleotide-disulfide oxidoreductase [Lachnospiraceae bacterium 5_1_63FAA] Length = 610 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +SCG+C PCR G G + ++ ++ G A R + ++E +K+I CA+G AA + Sbjct: 50 QSCGKCVPCRVGLGQLKNLITDVLDGKATIRTLTEIHETAKSIMESADCAIGYEAANMVY 109 Query: 403 GLIKNFRPLIEERIDQYHRC 422 F+ E I YHRC Sbjct: 110 KGAIGFKDDYVEHI-MYHRC 128 >gi|167768514|ref|ZP_02440567.1| hypothetical protein CLOSS21_03073 [Clostridium sp. SS2/1] gi|167710038|gb|EDS20617.1| hypothetical protein CLOSS21_03073 [Clostridium sp. SS2/1] gi|291560481|emb|CBL39281.1| NADPH-dependent glutamate synthase beta chain and related oxidoreductases [butyrate-producing bacterium SSC/2] Length = 610 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +SCG+C PCR G G + ++ ++ G A R + ++E +K+I CA+G AA + Sbjct: 50 QSCGKCVPCRVGLGQLKNLITDVLDGKATIRTLTEIHETAKSIMESADCAIGYEAANMVY 109 Query: 403 GLIKNFRPLIEERIDQYHRC 422 F+ E I YHRC Sbjct: 110 KGAIGFKDDYVEHI-MYHRC 128 >gi|323498079|ref|ZP_08103084.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM 21326] gi|323316859|gb|EGA69865.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM 21326] Length = 617 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 28/177 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I ++ +G+ G GGAGF T K + R L+VNA E EP D +M+ Sbjct: 134 DELIEIIRQAGISGMGGAGFPTAKKI----QSGLARTDILIVNAAECEPYITADDMLMQE 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 + +I G I + I + ++LQAA D D D Sbjct: 190 HANEIITGIEIVEHILKPKLTIIGIEDNKPDAVKALQAAAD----------------DKD 233 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 II+ Y G E L++ L K+ PA++GL V NV S+ + Sbjct: 234 IIIRVIPTKYPSGGEKQLIKILTNKEVPAN---GIPADIGLM-----VQNVGSLQAI 282 >gi|308275216|emb|CBX31813.1| hypothetical protein N47_N26380 [uncultured Desulfobacterium sp.] Length = 228 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 49/102 (48%) Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + ++ M+ + +++ L F+ +ESCG+C PCR G ++ ++ +V G + ++ Sbjct: 115 SGCIMTMESNVCMVQLADYLIKFHANESCGKCVPCRLGIQRLIELISGVVSGNSPANAVE 174 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + + + CA + I +I NFR E I + Sbjct: 175 QMQTMIRLTDQAAYCAFAGKVSKIILAIISNFREEFETHIKE 216 >gi|118594443|ref|ZP_01551790.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Methylophilales bacterium HTCC2181] gi|118440221|gb|EAV46848.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Methylophilales bacterium HTCC2181] Length = 510 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 11/96 (11%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 +W +D R I ++ SG+ G GGA F T +K + +V L+VNA E Sbjct: 120 NWKKID------RKETIKKISESGIVGLGGATFPTHLKLNNNNEV-----KTLIVNAAEC 168 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 EP D +MR + LIEG +A +GA A I Sbjct: 169 EPYITCDDMLMREKSAELIEGIRLALHLLGAQNAII 204 >gi|158520323|ref|YP_001528193.1| electron transport complex, RnfABCDGE type, C subunit [Desulfococcus oleovorans Hxd3] gi|158509149|gb|ABW66116.1| electron transport complex, RnfABCDGE type, C subunit [Desulfococcus oleovorans Hxd3] Length = 454 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 109/265 (41%), Gaps = 48/265 (18%) Query: 15 LQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 L+G +L + + G W D DK K I + A+G+ G GGA F T +K MP Sbjct: 114 LEGAALMEEILGGDWPKDAADKHDPKA---ISEAISAAGIVGLGGAAFPTHVK--IMPN- 167 Query: 73 CSDRP-HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 RP L++N E EP D IM +I G ++A A+GA + + + Sbjct: 168 -DKRPVDALLINGCECEPFLTPDYRIMVEAADAVICGALLAGRAVGAKQIVVGIEANKPK 226 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 E++ A G V I V Y G E L+ ++ +K P Sbjct: 227 AVEAMTRAAQ--------------GTAVKIAVLK--TKYPQGSEKHLIMAVMKRKVPPG- 269 Query: 192 KPPFPANVGLYGCPTTVNNVES-IAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVN 249 P VG V+NV + +AV +LR+ + ++ ++ G + Sbjct: 270 --KLPLEVG-----AAVSNVGTVVAVARAVLRKKPLTH-----------RVVCVTGGGIV 311 Query: 250 YPCTVEESMSITFDELIEKHCGGIR 274 P + + I++ ELIE CGG+R Sbjct: 312 QPKNLLVPIGISYGELIE-FCGGLR 335 >gi|254446706|ref|ZP_05060181.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Verrucomicrobiae bacterium DG1235] gi|198256131|gb|EDY80440.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Verrucomicrobiae bacterium DG1235] Length = 456 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 35/194 (18%) Query: 31 NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90 NVD E + I+ V+ +GL G GGA F T +K + PK + H +++N E EP Sbjct: 129 NVD---EMSQQEIVKAVQETGLVGLGGAAFPTHVKLT-PPK--DHKVHTVLINGCECEPF 182 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 D +M + L+ G I A+ A A I + E+++A Sbjct: 183 LTTDHRVMLEQAEDLVAGTRIFMKALNAERAIIGTENNKLDAVEAIRA------------ 230 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207 KL D I V Y G E L ++L L+ P +P++VGL Sbjct: 231 ---KLPKDGSITVQAVKTKYPQGAEKMLAKALM------NLEIPSGGYPSSVGL-----A 276 Query: 208 VNNVESIAVVPTIL 221 V NV S A V +L Sbjct: 277 VFNVSSTAQVGALL 290 >gi|315651309|ref|ZP_07904337.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium saburreum DSM 3986] gi|315486461|gb|EFU76815.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium saburreum DSM 3986] Length = 448 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D I N VK +G+ G GGAGF T +K S PK + Y++VN E EP D +M Sbjct: 123 KDEIRNIVKEAGIVGLGGAGFPTHVKLS--PK-NENEIDYIIVNGAECEPYLTSDYRLMM 179 Query: 100 HEPHTLIEGCVI 111 EP +I G I Sbjct: 180 EEPEKIIGGLKI 191 >gi|261367571|ref|ZP_05980454.1| Fe(III) reductase, beta subunit [Subdoligranulum variabile DSM 15176] gi|282570358|gb|EFB75893.1| Fe(III) reductase, beta subunit [Subdoligranulum variabile DSM 15176] Length = 611 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR G + ++E ++ A + IDL+ + + I CA+G +AAA + Sbjct: 50 QTCGKCVPCRIGLSQLETLLESVLDQTAPEGTIDLIEQTAAAIVDSADCAIGYEAAAMVL 109 Query: 402 QGLIKNFRPLIEERIDQYHRC 422 QG ++ FR EE Y RC Sbjct: 110 QG-VRGFREDYEEHA-HYGRC 128 >gi|254361779|ref|ZP_04977914.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213] gi|261494020|ref|ZP_05990523.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496221|ref|ZP_05992627.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093314|gb|EDN74310.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213] gi|261308173|gb|EEY09470.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310186|gb|EEY11386.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 764 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 ++ L D II +V G+ G GGA F T K S K C LV+N E EP Sbjct: 132 IEDFLSLTSDQIIQKVYQYGIAGLGGAVFPTATKLSLADKRCK----LLVINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ LIEG I + + I + ++L+ A L G Sbjct: 188 TCDDR-LMQDFTADLIEGIRILRYVLRPEEVVIAIEDNKPHAIQALETA--------LKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN D+ V Y G L++ L G Sbjct: 239 SN-------DMFVRAIPTKYPSGASDQLIQVLTG 265 >gi|257875824|ref|ZP_05655477.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC20] gi|257809990|gb|EEV38810.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC20] Length = 445 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 79/362 (21%), Positives = 131/362 (36%), Gaps = 82/362 (22%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 I N Y LS +W + + I+ +++ G+ G+GGA F T +K+S Sbjct: 101 IIENDYAFDNDFLSTPF---NWQSA------ANETILKKIRQGGIAGKGGATFPTHVKFS 151 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + + H L++N E EP D +M+ E +I+G IA + I + Sbjct: 152 IDE---NKKIHTLILNGSECEPFLRSDAFLMQKEAKKIIQGAKIAQKLLADPKIIIGIED 208 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 + ++QAA E D I V Y G E L+E L ++ Sbjct: 209 DKPLAISAMQAASAE---------------DDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253 Query: 188 QPRLKPP---FPANVG--LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 P A++G L T+ E++ ++ R Y+ Sbjct: 254 ------PLGGLTADIGIVLINVATSFAIAEAVCYDKPLIER----YT------------- 290 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRGA 301 +++G V +P V+ + ELI+ GG +G L+ P G SV L + Sbjct: 291 TVTGDVQHPRIVKNPLGTLAGELID-FAGGFQGAPSKLILGGPMMGKSVKTLKVPVTK-- 347 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 G+ ++V + TD W Y C +C C E ++ Sbjct: 348 --------------GSNGIVVFNEETD-----W----LYAENPCIRCNKCVEACPMLLMP 384 Query: 362 ME 363 ME Sbjct: 385 ME 386 >gi|227498966|ref|ZP_03929103.1| pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus sp. D21] gi|226904415|gb|EEH90333.1| pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus sp. D21] Length = 611 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G G + ++E ++ A ID + +K I CA+G AA + Sbjct: 50 QTCGKCVPCRIGLGQLATLIESVMNRTATLETIDRIERTAKVIADSADCAIGYEAAVMVL 109 Query: 403 GLIKNFRPLIEERI 416 +K FR EE I Sbjct: 110 KGVKGFRDDYEEHI 123 >gi|139438950|ref|ZP_01772410.1| Hypothetical protein COLAER_01416 [Collinsella aerofaciens ATCC 25986] gi|133775661|gb|EBA39481.1| Hypothetical protein COLAER_01416 [Collinsella aerofaciens ATCC 25986] Length = 615 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +SCG+CTPCR G + ++ +++G A + ++L+ ++ I + CA+G A Sbjct: 55 QSCGKCTPCRVGLSALSDLLADVLEGRADESTLNLIERTARTIYLSSDCAIGYEAGAMAL 114 Query: 403 GLIKNFRPLIEERIDQYHRCNF 424 I+ FR E I + H C F Sbjct: 115 TAIRGFRDDFEHHIRE-HSCGF 135 >gi|27904613|ref|NP_777739.1| electron transport complex protein RnfC [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396891|sp|Q89AW8|RNFC_BUCBP RecName: Full=Electron transport complex protein rnfC gi|27904010|gb|AAO26844.1| electron transport complex protein RnfC [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 505 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +IN + SG+ G G+GFST K + + H LVVNA ESEP D ++++ Sbjct: 148 LINLIYHSGILGLSGSGFSTSKKL----QCAVGKVHTLVVNAVESEPCVTSDDCLIQNFS 203 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 +I+GC I + + I V E I L+ +V LL +K Sbjct: 204 KEIIDGCKILIWILKIKKILIVVSEEKIIAFNVLKKSVINLKDFELLKVKNK 255 >gi|269468925|gb|EEZ80509.1| electron transport complex protein RnfC [uncultured SUP05 cluster bacterium] Length = 502 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 37/214 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I ++ SG+ G GGAGF T K + + H L++N E EPG D +M++ P Sbjct: 127 MIEYIRISGIVGLGGAGFPTHTKVAR-----AQDCHTLIINGTECEPGVMCDDALMQYYP 181 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD-- 160 +I G I GA A I V + ++E+ NS L Y+ + Sbjct: 182 REVIRGVEILLHICGASRAIIAVEND---KQEAF---------------NSLLMYNHNER 223 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTTVNNVESIAVV 217 I + H Y G E L+++L G ++ P F ++G+ AVV Sbjct: 224 ISIVHIPTKYTSGAEKLLIKALLG------VEVPSGGFAPDLGVVCQNVATTKAIFDAVV 277 Query: 218 ---PTILRRGASWYSGFGRENNRGTKLFSISGHV 248 P + R SG + NN +L S HV Sbjct: 278 ESKPLVSRIVTVTGSGVEKPNNFEVRLGSSFDHV 311 >gi|255524099|ref|ZP_05391060.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] gi|296188445|ref|ZP_06856833.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium carboxidivorans P7] gi|255512236|gb|EET88515.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] gi|296046709|gb|EFG86155.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium carboxidivorans P7] Length = 442 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 38/198 (19%) Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y +VN E EP D+ +MR++ +++ AIGA I ++ E+ E ++L+ Sbjct: 31 EYFIVNGLECEPLLQSDKYMMRNKSDEIVQAVEEIGKAIGAKHLVIGLKEEYRDEIQALK 90 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--F 195 ++++ ++ I +H Y G+E L+ + G R PP Sbjct: 91 NSIEK--------------FNSKIKLHLSRAFYPAGDEQVLVYEVTG-----RTIPPAGI 131 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P NVG V+N +I + ++ A Y K ++ G V P V+ Sbjct: 132 PLNVG-----AVVSNSGTILNIFEAMQDKAVTY-----------KFVTVIGEVAKPSIVK 175 Query: 256 ESMSITFDELIEKHCGGI 273 + E++EK CGG+ Sbjct: 176 VPIGTKVKEVLEK-CGGV 192 >gi|206891092|ref|YP_002249519.1| F420-non-reducing hydrogenase vhc iron-sulfur subunit D [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743030|gb|ACI22087.1| F420-non-reducing hydrogenase vhc iron-sulfur subunit D [Thermodesulfovibrio yellowstonii DSM 11347] Length = 274 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 54/114 (47%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+ L + +G+A + + + + I + + SC +C PCR GT M ++ Sbjct: 141 IDWQTLSRTVATVGSAGKLFWEEDKCMAEMIDFFLSYAQENSCAECIPCRIGTKRMQEMV 200 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ G RE+ LL + +I + C LG A ++ +++ + IE + Sbjct: 201 KKIFDGSISTRELSLLEYFADDIGASSKCDLGLMAGKAVKFALQHCKSDIEAHL 254 >gi|160946965|ref|ZP_02094168.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270] gi|158447349|gb|EDP24344.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270] Length = 444 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+ +K +G+ G GGAGF T +K + +D Y+++N E EP D+ +M P Sbjct: 127 IIDAIKEAGIVGLGGAGFPTHVKLTAREGQITD---YIIINCAECEPYLTSDQLMMELYP 183 Query: 103 HTLIEGCVIASFAIGA 118 ++ G ++A A+GA Sbjct: 184 EKVVMGLLLAMKAMGA 199 >gi|330997032|ref|ZP_08320894.1| electron transport complex, RnfABCDGE type, C subunit [Paraprevotella xylaniphila YIT 11841] gi|329571530|gb|EGG53212.1| electron transport complex, RnfABCDGE type, C subunit [Paraprevotella xylaniphila YIT 11841] Length = 447 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 48/265 (18%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+N VKA+G+ G GGA F +K + PK + +++NA E EP D ++ +P Sbjct: 128 IVNTVKAAGIVGMGGATFPCHVKLT-PPK--GTKAECVIINAVECEPYLTADHRLLLEKP 184 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ G + A+G +I + ++ A LL +K ++++ Sbjct: 185 DEILVGVDLIMKAVGVDKGYIGIEN-------------NKPDAIALLTEKAKAYPHIEVV 231 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 Y G E L+ ++ G++ P P NVG V NV ++ + Sbjct: 232 PLQ--VKYPQGGEKQLIAAVTGREVP--APPALPINVG-----AVVQNVGTVFAI----- 277 Query: 223 RGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 Y + ++ +++G V P + + ++LIE CGG+ +N Sbjct: 278 -----YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIE-ECGGLP---ENTG 328 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYD 306 VI GG M A+M+ D Sbjct: 329 KVIGGGP--------MMGKALMNLD 345 >gi|300727611|ref|ZP_07061000.1| electron transport complex protein RnfC [Prevotella bryantii B14] gi|299775131|gb|EFI71734.1| electron transport complex protein RnfC [Prevotella bryantii B14] Length = 472 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 37/247 (14%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+N VK +G+ G GGAGF T +K P + + ++++NA E EP D Sbjct: 125 ELTSEEIVNRVKVAGVTGMGGAGFPTFIKLCPPP---TAKAEFVIINAVECEPYITSDYR 181 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M ++ G + A FI + + E+++ + C G Sbjct: 182 LMMEHADEILVGVELLMKAAKVDKGFIGIEE---NKPEAIRLLTELC--------KEHAG 230 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +V + Y G E L++++ G+ Q P P NVG V NV + Sbjct: 231 IEVVPL----KTKYPQGGEKQLVDAVVGR--QVPAPPAIPVNVG-----AIVQNVGTAYA 279 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 V Y + + +++G H+ P M +LIE CGG+ Sbjct: 280 V----------YQAVMKNKPLFERYTTVTGKHIKNPSNFLVRMGTPMSQLIEA-CGGLPD 328 Query: 276 GWDNLLA 282 + +LA Sbjct: 329 DDNKVLA 335 >gi|90408374|ref|ZP_01216537.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3] gi|90310537|gb|EAS38659.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3] Length = 839 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 21 SDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +D++ R + N++K L ++ ++I+E++ +G+ G GGAGF T +K + Sbjct: 120 TDALDR--YINIEKPLPYWQQSSHFLIDEIQKAGIVGLGGAGFPTHLKLK-----GHEAT 172 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 L++NA E EP D +M+ + +I G + + I + + E+L Sbjct: 173 QLLLINAAECEPYISADDRLMQEHANEIIAGINVLQHILNPKLTIIAIEDNKPQAIEALT 232 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 A+ N+ + II+ Y G E L+E + GK+ Sbjct: 233 EAL-----------NTTKNH---IIIRKIPTLYPSGSEKQLIEIITGKQ 267 >gi|78485378|ref|YP_391303.1| electron transport complex, RnfABCDGE type, C subunit [Thiomicrospira crunogena XCL-2] gi|78363664|gb|ABB41629.1| NADH oxidoreductase, RnfABCDGE type, C subunit [Thiomicrospira crunogena XCL-2] Length = 704 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/267 (21%), Positives = 104/267 (38%), Gaps = 44/267 (16%) Query: 5 QDRIFTNLYGLQGKSL---SDSMSRGHWDN--VDKILEKGRDWIINEVKASGLRGRGGAG 59 + R + GL G S+ SD + ++ VD D + V +G+ G GGAG Sbjct: 109 EPRTLPHASGLSGLSIVLESDQKDQAIENSLEVDGATPGTPDKLKALVHKAGIVGMGGAG 168 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T K P + YL++N E EP D +M+ +++G +I + ++G Sbjct: 169 FPTFAKIPSQP----GQIKYLLINGAECEPFITCDDMLMQTRAEDIVQGAMIVAQSLGIK 224 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 + + +++Q K D D+ ++ A AY G +T L Sbjct: 225 HILCGIEDNKAKAIKAMQ----------------KAAKDTDVQINVVATAYPMGGQTQLT 268 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + L G + PA+ + NV + A + Y + N + Sbjct: 269 QELTGIE--------LPAHTHAIDVGVLMMNVATFAAI----------YQAVVQGNPLTS 310 Query: 240 KLFSISGH-VNYPCTVEESMSITFDEL 265 + ++SG +N P ++ + +F EL Sbjct: 311 RYITVSGLGLNKPFNIDARLGTSFKEL 337 >gi|153939908|ref|YP_001392933.1| respiratory-chain NADH dehydrogenase family protein [Clostridium botulinum F str. Langeland] gi|152935804|gb|ABS41302.1| respiratory-chain NADH dehydrogenase family protein [Clostridium botulinum F str. Langeland] gi|295320911|gb|ADG01289.1| respiratory-chain NADH dehydrogenase family protein [Clostridium botulinum F str. 230613] Length = 428 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 37/248 (14%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K+LE + I++ ++A+G+ G GGAGF T +K + ++ NA E EP Sbjct: 72 KLLESSNN-ILDLIQAAGIVGMGGAGFPTHIKMDV-----NLNGGVVIANAVECEPLLAH 125 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 + + + +EP + +G A A+ A ++ + + SL+ + Sbjct: 126 NINQIINEPELIYKGLCYAMEAVNASKGVFAIKSKNVEAISSLKNVIK------------ 173 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 D ++ + Y GEE A++ + GK P + P AN + T E+ Sbjct: 174 ----DSNVKIVELPYMYPMGEERAIIREVLGKLLDPS-QLPLEANAVVSNVETLAKIAEA 228 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 + + ++ + + +N +++F +N P + T ELIE GGI Sbjct: 229 VELKKPVISKNITVVGKL--KNGLESQVF-----INVP------IGTTVKELIEA-AGGI 274 Query: 274 RGGWDNLL 281 G + ++ Sbjct: 275 DGEYGEII 282 >gi|331091676|ref|ZP_08340510.1| hypothetical protein HMPREF9477_01153 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403433|gb|EGG82992.1| hypothetical protein HMPREF9477_01153 [Lachnospiraceae bacterium 2_1_46FAA] Length = 438 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 117/282 (41%), Gaps = 50/282 (17%) Query: 8 IFTNLYGLQGKSLSDSM----SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 IF+++YG + L D + + +KI E + ++ VKA+G+ G GGAGF TG Sbjct: 42 IFSSVYGEVTEVLEDRIVIRPDEVQSEEFEKIEEGSK---LDMVKAAGIVGMGGAGFPTG 98 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +K + Y+++NA E EPG + + E +I G A A Sbjct: 99 VKIG-----TDLQGGYILINAAECEPGLRHNIQQIEEECDKVIRGVKYTMEISNAAKAIF 153 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 ++ + + ++L+ A+ + A I +H Y GEE A++ Sbjct: 154 AIKKKNEKAVQTLKEALKDEEA---------------ISIHLLPDIYPMGEERAVVRECL 198 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G + +P P ++ V NVE++A + + +S K + Sbjct: 199 GIELKPEELPSVAKSI--------VINVETLARITEAIEERKPCFS----------KNLT 240 Query: 244 ISGHV---NYPCTVEE-SMSITFDELIEKHCGGIRGGWDNLL 281 + G + N P ++ + + ELIE+ GGI G + ++ Sbjct: 241 VIGKLNGGNEPHVFKDVPVGTSVAELIER-AGGIDGEYGEII 281 >gi|229826588|ref|ZP_04452657.1| hypothetical protein GCWU000182_01963 [Abiotrophia defectiva ATCC 49176] gi|229789458|gb|EEP25572.1| hypothetical protein GCWU000182_01963 [Abiotrophia defectiva ATCC 49176] Length = 609 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 DI +A + ++CG+C PCR G + +M ++ G A I L+ E +K+I Sbjct: 37 VDITRAFIEMC---HAQTCGKCVPCRVGLLHLKHLMTTVLNGNATMDIIPLIEETAKSIS 93 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 CA+G AA + + R EE I + RCN Q Sbjct: 94 ETADCAIGYEAANMVYKAVTTCRDDFEEHI-RNGRCNCQ 131 >gi|94498904|ref|ZP_01305442.1| electron transport complex protein RnfC [Oceanobacter sp. RED65] gi|94428536|gb|EAT13508.1| electron transport complex protein RnfC [Oceanobacter sp. RED65] Length = 727 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 +D LE RD +I+ ++ SG+ G GGA F T +K V +R L++NA E EP Sbjct: 120 LDNPLETDRDTLIDIIQQSGITGLGGASFPTHVKTC----VPEERIDTLILNAAECEPYI 175 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 D +MR L++G + I + E+LQ A+D Sbjct: 176 TADDMLMRSYADGLVKGIELLFHLYQPEKCLIGIEDNKPEAIEALQKALD 225 >gi|281357469|ref|ZP_06243957.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis vadensis ATCC BAA-548] gi|281316072|gb|EFB00098.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis vadensis ATCC BAA-548] Length = 440 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 H +V ++L++ D +GL G GGA F T +K S P D L++N E Sbjct: 121 HKADVKELLKRTAD--------AGLVGMGGAAFPTHVKLSPPPDKTID---TLILNGAEC 169 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 EP D +M +P ++EG I++ + +I V I E+L Sbjct: 170 EPYLTADHRLMLEQPERVLEGAAISAKILNVKNVYIGVEANKIDAIEAL 218 >gi|317497311|ref|ZP_07955634.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA] gi|316895380|gb|EFV17539.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA] Length = 438 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ +K +G+ G GGAGF T +K + PK D Y++VN E EP D I+ Sbjct: 120 KDDVLAAIKEAGIVGLGGAGFPTHVKLA--PK-DPDAIEYIIVNGAECEPYITGDYRILM 176 Query: 100 HEPHTLIEGCVI 111 P LIEG I Sbjct: 177 ETPELLIEGLNI 188 >gi|170761255|ref|YP_001788921.1| respiratory-chain NADH dehydrogenase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408244|gb|ACA56655.1| respiratory-chain NADH dehydrogenase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 428 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 36/241 (14%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I++ ++A+G+ G GGAGF T +K ++ NA E EP + + + + Sbjct: 78 NNILDLIQAAGIVGMGGAGFPTHIKMDV-----DLNGGVVIANAVECEPLLAHNINQIIN 132 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 EP + +G A A+ A ++ + + SL+ + D + Sbjct: 133 EPELIYKGLCYAMKAVNASKGIFAIKSKNVEAISSLKNVIK----------------DTN 176 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + Y GEE A++ + GK P + P AN + T E++ + + Sbjct: 177 IEIVKLPDMYPMGEERAIIREVLGKLLDPS-QLPLEANAVVSNVETLAKIAEAVELKKPV 235 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + + + +N +++F +N P + T ELIE GGI G + + Sbjct: 236 ISKNITVVGKL--KNGLESQVF-----INVP------IGTTVRELIEA-AGGIDGEYGEI 281 Query: 281 L 281 + Sbjct: 282 I 282 >gi|291559406|emb|CBL38206.1| electron transport complex, RnfABCDGE type, C subunit [butyrate-producing bacterium SSC/2] Length = 438 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ +K +G+ G GGAGF T +K + PK D Y++VN E EP D I+ Sbjct: 120 KDDVLAAIKEAGIVGLGGAGFPTHVKLA--PK-DPDAIEYIIVNGAECEPYITGDYRILM 176 Query: 100 HEPHTLIEGCVI 111 P LIEG I Sbjct: 177 ETPELLIEGLNI 188 >gi|148265660|ref|YP_001232366.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter uraniireducens Rf4] gi|146399160|gb|ABQ27793.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Geobacter uraniireducens Rf4] Length = 672 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 14/112 (12%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 YDG + M + +G +IV ++ D+ + + R+ Y CG+CTP ++GT +M Sbjct: 33 YDGERPMAAFMGWDGIIVFNKDVDVPVMAAEYMRRVQTLY---CCGKCTPGKKGTRVLMD 89 Query: 361 VMERLVKGIAQKRE---IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ G A + + I+ L ++ KN + C L ++ P+ +K FR Sbjct: 90 ALAAIIAGKASEADLATIEDLADLLKNCK----CTLCQSSTVPVLDAVKYFR 137 >gi|297539546|ref|YP_003675315.1| RnfABCDGE type electron transport complex subunit C [Methylotenera sp. 301] gi|297258893|gb|ADI30738.1| electron transport complex, RnfABCDGE type, C subunit [Methylotenera sp. 301] Length = 640 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 9/107 (8%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 GK + W N DK L +++ +++SG+ G GGA F T +K K Sbjct: 123 GKDTWTQLQPAGWRNADKKL------LVDSLRSSGIVGLGGATFPTHIKLRTNGK---SN 173 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 H LV+NA E EP D +MR +I+G I +GA I Sbjct: 174 VHTLVINAAECEPYITCDDMLMRERSDQVIKGIEIVQHLLGAEKCII 220 >gi|325662494|ref|ZP_08151097.1| hypothetical protein HMPREF0490_01837 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086276|ref|ZP_08335356.1| hypothetical protein HMPREF0987_01659 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471190|gb|EGC74415.1| hypothetical protein HMPREF0490_01837 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406042|gb|EGG85565.1| hypothetical protein HMPREF0987_01659 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 610 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 DI +A L ++CG+C PCR G G + ++ ++ G A + +DL+ +++ +I Sbjct: 37 VDISRAFLELC---HAQTCGKCVPCRIGLGQLKNLITDVLDGKATLKTLDLMEDLALSIM 93 Query: 387 GRTICALG-DAAAWPIQGLIKNFRPLIEERIDQ 418 CA+G +AA +GLI +R EE I Q Sbjct: 94 DSADCAIGYEAAHMVYKGLI-GYREDYEEHIRQ 125 >gi|289208953|ref|YP_003461019.1| electron transporter subunit C [Thioalkalivibrio sp. K90mix] gi|288944584|gb|ADC72283.1| electron transport complex, RnfABCDGE type, C subunit [Thioalkalivibrio sp. K90mix] Length = 541 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%) Query: 27 GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 GH D D +E DW + ++A G+ G GGA F T +K + P+ R H Sbjct: 105 GHDDWGDARMEPWLDWDTRDLRALRQRLRAGGIVGLGGAAFPTAVKLN--PRA-GQRIHT 161 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 LVVN E EP D ++R P + EG I + +G V SL Sbjct: 162 LVVNGAECEPYISADDMLLRTAPEAVFEGIRITARLLGVERVLFAVEDNMPEAMRSL 218 >gi|167767284|ref|ZP_02439337.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1] gi|167711259|gb|EDS21838.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1] Length = 450 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ +K +G+ G GGAGF T +K + PK D Y++VN E EP D I+ Sbjct: 132 KDDVLAAIKEAGIVGLGGAGFPTHVKLA--PK-DPDAIEYIIVNGAECEPYITGDYRILM 188 Query: 100 HEPHTLIEGCVI 111 P LIEG I Sbjct: 189 ETPELLIEGLNI 200 >gi|253699315|ref|YP_003020504.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter sp. M21] gi|251774165|gb|ACT16746.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter sp. M21] Length = 670 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 61/109 (55%), Gaps = 4/109 (3%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDI--IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + YDG + + + +G +I+ ++ DI + A + V K+ CG+CTP ++GT MM Sbjct: 31 VSYDGERPLSAFIGWDGIILYNKDVDIPAMVAEYMKRVQTKY-VCGKCTPGKKGTRVMMD 89 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +V+G ++++D + ++ + ++ C L +++ P+ + +FR Sbjct: 90 ALAAIVEGRGSEKDLDTILDLGEVLK-HCKCTLCPSSSVPVIDAVTHFR 137 >gi|189423729|ref|YP_001950906.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter lovleyi SZ] gi|189419988|gb|ACD94386.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter lovleyi SZ] Length = 672 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/128 (21%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCT 349 PA + +DG + + + +G +IV D+ D+ + + R+ Y CG+CT Sbjct: 23 PAAASYRLPVAFDGQQPLRAFMGWDGIIVFDKDVDVPAMAAEYMQRVQTMY---CCGKCT 79 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 P ++GT + ++++++KG A+ ++D + +++ ++ C L ++ P+ + +R Sbjct: 80 PGKKGTKVLADLLQKVIKGEAKPGDLDQVADLNALLQN-CKCTLCPSSTKPVLDAVTYYR 138 Query: 410 PLIEERID 417 E D Sbjct: 139 ADFEALCD 146 >gi|304440541|ref|ZP_07400428.1| Fe(III) reductase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371019|gb|EFM24638.1| Fe(III) reductase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 610 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR G + ++++ ++ G A +D++ + + + CA+G +AA Sbjct: 50 QTCGKCVPCRVGLAQLAKLIKDVLDGNATLETLDVIEQTALTAMESSDCAIGYEAANMVY 109 Query: 402 QGLIKNFRPLIEERIDQYHRCNF 424 +GLI FR EE I + RCNF Sbjct: 110 KGLI-GFRDDYEEHI-LHGRCNF 130 >gi|78224216|ref|YP_385963.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Geobacter metallireducens GS-15] gi|78195471|gb|ABB33238.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Geobacter metallireducens GS-15] Length = 672 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 8/108 (7%) Query: 306 DGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 DG + + + +G +IV D+ D+ + + R+ Y CG+CTP ++GT +M Sbjct: 34 DGDRALAAFMGWDGIIVFDKGVDVPAMAAEYMKRVQTLY---CCGKCTPGKKGTRVLMDA 90 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +V+G + ++D + ++ ++ C L ++ P+ +K+FR Sbjct: 91 LAAIVEGRGTEAQLDTIADLG-DLLANCKCTLCQSSTVPVIDAVKHFR 137 >gi|291550297|emb|CBL26559.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus torques L2-14] Length = 439 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 54/120 (45%), Gaps = 17/120 (14%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 ++ V + E R+ IIN++ +G+ G GGAGF T +K S PK D+ Y++ N E Sbjct: 109 EYEPVKPLEEMTREEIINKIGDAGIVGMGGAGFPTKVKLS--PKE-PDKIEYIIANCAEC 165 Query: 88 EPGTCKDRDIMRHEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRER------ESLQAAV 140 EP D M L+ G VI S F RG F E E LQ AV Sbjct: 166 EPYITADYRRMLEYTEDLVSGMKVILSL-------FPNARGVFAVEDNKKDCIEKLQKAV 218 >gi|146279225|ref|YP_001169383.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides ATCC 17025] gi|145557466|gb|ABP72078.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides ATCC 17025] Length = 519 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 45/246 (18%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 + I +V +G+ G GGA F + +K + + H LV+N E EP TC DR +MR Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRARYDL---HTLVINGAECEPYLTCDDR-LMR 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +G I + A+G + + + E I + A+D L Sbjct: 192 ERAEEIADGIGIMARALGVRQIVVAIESNKAEAISAMQRFDRALD-------------LP 238 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 V ++ Y G E L++ L G++ R A++G+ V+N + Sbjct: 239 MRVQVVPTQ----YPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHA 286 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V +R G S ++ ++SG + P V + E+I HCGG+ Sbjct: 287 VHLAVRYGEPLLS----------RVVTVSGRGIRRPANVRVLIGTPVAEVI-AHCGGLTE 335 Query: 276 GWDNLL 281 D LL Sbjct: 336 EPDRLL 341 >gi|325263576|ref|ZP_08130310.1| PduS protein [Clostridium sp. D5] gi|324031285|gb|EGB92566.1| PduS protein [Clostridium sp. D5] Length = 450 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 68/310 (21%), Positives = 115/310 (37%), Gaps = 60/310 (19%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGAGF T K +R +++N E EP R ++ ++ Sbjct: 11 LQLNGIVGAGGAGFPTYAKLD-------ERAETIILNCAECEPLLRLHRQLLEKYAQEIV 63 Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 E + A+GA I ++ + + E+L+ + E Y LG ++ Sbjct: 64 ETFHMMGQAVGAKDVVIGIKKAYKKTIEALEEVIGE-YPEVRLGLLDEV----------- 111 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 Y G+E L+ + GK +P P + V ++ NVE++ V Sbjct: 112 ---YPAGDEVVLIYEVTGKVVRPG-GIPIESGVAVF-------NVETVYNV--------- 151 Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 Y ++ KL SI V +P TV + T +E + Sbjct: 152 -YRAVNQQAPVTDKLVSIVAEVEHPVTVRVPIGTTIEETVRL-----------------A 193 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES-- 344 G+ P + G +M + G T AV+V+ II+ R S + Sbjct: 194 GNVTAKDPVYFIGGPMMGFIGSGSQPVTKTTNAVLVLPEEHLIIQKKRRKSSIDLKRAAA 253 Query: 345 -CGQCTPCRE 353 C QCT C + Sbjct: 254 CCCQCTMCTD 263 >gi|42527102|ref|NP_972200.1| putative glutamate synthase (NADPH) small subunit [Treponema denticola ATCC 35405] gi|41817526|gb|AAS12111.1| pyridine nucleotide-disulphide oxidoreductase family protein [Treponema denticola ATCC 35405] Length = 609 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G + ++ ++ G + + +DL+ E +K+I CALG AA + Sbjct: 50 QTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRETADCALGYEAADMVY 109 Query: 403 GLIKNFRPLIEERIDQYHRC 422 I R EE I ++ RC Sbjct: 110 KSIIYCRDDFEEHI-KHGRC 128 >gi|325474149|gb|EGC77337.1| pyridine nucleotide-disulfide oxidoreductase [Treponema denticola F0402] Length = 609 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G + ++ ++ G + + +DL+ E +K+I CALG AA + Sbjct: 50 QTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRETADCALGYEAADMVY 109 Query: 403 GLIKNFRPLIEERIDQYHRC 422 I R EE I ++ RC Sbjct: 110 KSIIYCRDDFEEHI-KHGRC 128 >gi|326791176|ref|YP_004308997.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium lentocellum DSM 5427] gi|326541940|gb|ADZ83799.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium lentocellum DSM 5427] Length = 439 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 67/294 (22%), Positives = 114/294 (38%), Gaps = 65/294 (22%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ++ + D ++ G+ + SD + N+ K + +I VK +GL G GGA F Sbjct: 97 IVIENDNLYEETPGMATSAKSD------YKNLTK------EELIGLVKEAGLVGMGGATF 144 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K S P Y+++N E EP D +M +IEG Sbjct: 145 PTHVKLSTPP---DKTVEYIIINGAECEPYLTSDHRVMLENGEEVIEG------------ 189 Query: 121 AFIYVRGEFIRERESL----QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEET 176 I + E +E +++ +D +L N++ V + Y G E Sbjct: 190 --IKILLEVYKEAKAIIGIENNKMDAIKQMKMLAKNTERLEVVTL-----DTKYPQGSEK 242 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 L+ ++ K+ P K P GC V N++S+ V + +G Sbjct: 243 HLIYAIT-KREVPSGKLPID-----IGC--IVQNIDSMVAVCRAVTKGQPVMR------- 287 Query: 237 RGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD--NLLAVIPGG 287 ++ ++SG V PC VE + +F E++E WD + +I GG Sbjct: 288 ---RIVTVSGSGVKKPCNVEVKVGTSFKEVLE------YAEWDMERTVKIIAGG 332 >gi|227499954|ref|ZP_03930047.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus tetradius ATCC 35098] gi|227218063|gb|EEI83336.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus tetradius ATCC 35098] Length = 441 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 9/113 (7%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 DNVD E+ I+ ++K +G+ G GGA F +K+ MP + + ++VN E EP Sbjct: 116 DNVDLSAEE----IVAKIKEAGIVGMGGAAFPAHIKY--MP---AKKVDTVIVNGAECEP 166 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 D +M++ P +++G A A+ A + + + ES+ A+ E Sbjct: 167 YITCDDYLMKNRPQRILKGLTQAIKAVNADRGIVAIEDNKPKAYESMTKALAE 219 >gi|254457413|ref|ZP_05070841.1| formate dehydrogenase, beta subunit [Campylobacterales bacterium GD 1] gi|207086205|gb|EDZ63489.1| formate dehydrogenase, beta subunit [Campylobacterales bacterium GD 1] Length = 664 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVM 362 YD ++ + +G V + + D+I+ + Y+ E+CG+C P R G + + Sbjct: 35 YDDHRDSKAFIGWDGVSLFNEDVDVIRLAMEYAAQYQVYSEACGRCAPGRWGGRILYDQL 94 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ +G ++D L E+ K+++ + C +G PI L+ +F Sbjct: 95 DKIARGEGAIADMDHLKEIGKSMQITSKCEIGKTVPNPIIDLMTHF 140 >gi|90022046|ref|YP_527873.1| electron transport complex protein RnfC [Saccharophagus degradans 2-40] gi|89951646|gb|ABD81661.1| serine/threonine protein kinase [Saccharophagus degradans 2-40] Length = 745 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 24/187 (12%) Query: 5 QDRIFTNLYGLQGKSL---SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +DR+ T+ G+ + + D R D + + D ++ +++A+G+ G GGAGF Sbjct: 85 EDRVVTHPSGMSAQCIIIKPDGEDRWTQLDACEDYAQLDHDRLVQKIRAAGIVGMGGAGF 144 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC-VIASFAIGAH 119 T +K + PK + L+ N E EP D +MR +++G +IA F Sbjct: 145 PTAIKVN--PK-SNKHVKTLIFNGTECEPYITADDMLMRERADDIVKGVQLIARFMGEVE 201 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I + ++Q A + G D++++V Y G E L+ Sbjct: 202 ETLIGIEDNKPEAIAAMQKAAE--------------GTDIEVVVF--PTKYPSGGEKQLI 245 Query: 180 ESLEGKK 186 + L GK+ Sbjct: 246 QILTGKE 252 >gi|19704917|ref|NP_602412.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712812|gb|AAL93711.1| Nitrogen fixation iron-sulphur protein RNFC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 441 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60 +I + ++ L GK ++ ++ + W + KI E + +++ ++ G+ G GGA F Sbjct: 87 KIESRVFPLTGKVMTVFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 146 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K + P D L++N E EP D +M P +++EG I + Sbjct: 147 PTHVKLNPPPNTQLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPN 203 Query: 121 AFIYVRGEFIRERESLQAAVD 141 ++ + ES++ A + Sbjct: 204 VYVGIEDNKPEAIESMRKATE 224 >gi|237741389|ref|ZP_04571870.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 4_1_13] gi|229430921|gb|EEO41133.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 4_1_13] Length = 435 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60 +I + ++ L GK ++ ++ + W + KI E + +++ ++ G+ G GGA F Sbjct: 81 KIESRVFPLTGKVMTIFIENDKKEEWTELSKIENWEEADKKALLDIIREKGIVGIGGATF 140 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K + P D L++N E EP D +M P +++EG I + Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197 Query: 121 AFIYVRGEFIRERESLQAAVD 141 ++ + ES++ A + Sbjct: 198 VYVGIEDNKPEAIESMRKATE 218 >gi|296329171|ref|ZP_06871672.1| electron transport complex protein RnfC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153527|gb|EFG94344.1| electron transport complex protein RnfC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 441 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60 +I + ++ L GK ++ ++ + W + KI E + +++ ++ G+ G GGA F Sbjct: 87 KIESRVFPLTGKVMTIFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 146 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K + P D L++N E EP D +M P +++EG I + Sbjct: 147 PTHVKLNPPPNTQLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPN 203 Query: 121 AFIYVRGEFIRERESLQAAVD 141 ++ + ES++ A + Sbjct: 204 VYVGIEDNKPEAIESMRKATE 224 >gi|257866189|ref|ZP_05645842.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC30] gi|257872520|ref|ZP_05652173.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC10] gi|257800123|gb|EEV29175.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC30] gi|257806684|gb|EEV35506.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC10] Length = 445 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 79/362 (21%), Positives = 130/362 (35%), Gaps = 82/362 (22%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 I N Y LS +W + + I+ +++ G+ G+GGA F T +K+S Sbjct: 101 IIENDYAFDNDFLSTPF---NWQSA------ANETILKKIRQGGIAGKGGATFPTHVKFS 151 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + + H L++N E EP D +M+ E +I+G IA + I + Sbjct: 152 IDE---NKKIHTLILNGSECEPFLRSDAFLMQKEAKKIIQGAKIAQKLLADPKIIIGIED 208 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 + ++QAA E D I V Y G E L+E L ++ Sbjct: 209 DKPLAISAMQAASAE---------------DDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253 Query: 188 QPRLKPP---FPANVG--LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 P A++G L T+ E++ ++ R Y+ Sbjct: 254 ------PLGGLTADIGIVLINVATSFAIAEAVCYDKPLIER----YT------------- 290 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRGA 301 +++G V +P V+ + ELI+ GG +G L+ P G SV L + Sbjct: 291 TVTGDVQHPRIVKNPLGTLAGELID-FAGGFQGAPSKLILGGPMMGKSVKTLKVPVTK-- 347 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 G+ ++V + TD W Y C +C C E + Sbjct: 348 --------------GSNGIVVFNEETD-----W----LYAENPCIRCNKCVEACPMRLMP 384 Query: 362 ME 363 ME Sbjct: 385 ME 386 >gi|319955921|ref|YP_004167184.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase [Nitratifractor salsuginis DSM 16511] gi|319418325|gb|ADV45435.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Nitratifractor salsuginis DSM 16511] Length = 670 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRV 361 +YD K + +G V + D D ++ + Y+ E+CG+C P R G + + Sbjct: 34 NYDEGKPSKAFIGWDGVAIFDEEIDAVRLATEYAATYQKYSEACGRCAPGRWGGRILYDL 93 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++++ +G +++ L EVS+ + + C +G PI L+++++ Sbjct: 94 LDKIARGEGSFADVEHLREVSQTMMLTSKCEIGRTVPKPILDLMEHYK 141 >gi|282857805|ref|ZP_06267013.1| FAD dependent oxidoreductase [Pyramidobacter piscolens W5455] gi|282584366|gb|EFB89726.1| FAD dependent oxidoreductase [Pyramidobacter piscolens W5455] Length = 610 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Query: 336 LSVFYKH----ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 L+V + H +SCG+C PCR G + ++ ++ G A ID + ++++ + C Sbjct: 39 LAVSFLHICHSQSCGKCVPCRVGLSRLEELLNSVLDGRADMGTIDTIERTAESVYLTSDC 98 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 A+G AA + ++ FR E I Q+ RC Sbjct: 99 AIGQEAARMVLKGVRGFRDDFVEHI-QHGRC 128 >gi|52424975|ref|YP_088112.1| electron transport complex protein RnfC [Mannheimia succiniciproducens MBEL55E] gi|81691415|sp|Q65U33|RNFC_MANSM RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|52307027|gb|AAU37527.1| NqrA protein [Mannheimia succiniciproducens MBEL55E] Length = 723 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L + + +I ++ +G+ G GGA F T K K + L++N E EP Sbjct: 125 IDDFLSQSAEQLIEKIYQAGIAGLGGAVFPTAAKIDSAQK----KVKLLIINGAECEPYI 180 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 TC DR +MR P +IEG I + + I V +S++ A+ Sbjct: 181 TCDDR-LMRDNPDEIIEGIRILRYILRPEKVVIAVEDNKPEAVQSIKNAL 229 >gi|291458461|ref|ZP_06597851.1| Fe(III) reductase, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418994|gb|EFE92713.1| Fe(III) reductase, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 611 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR+G + R++++++ G A ++ +D + ++ I + CA+G AA + Sbjct: 50 QTCGKCVPCRDGLPLVARLLQKVINGDATQQTLDNIKMMAMMIRESSDCAIGWNAADEVL 109 Query: 403 GLIKNFRPLIEERIDQYHRCN 423 ++ F + I ++H+C+ Sbjct: 110 KGLELFADEYQSHI-RFHKCD 129 >gi|322421177|ref|YP_004200400.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Geobacter sp. M18] gi|320127564|gb|ADW15124.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Geobacter sp. M18] Length = 670 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDI--IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 YDG + + + +G +++ ++ DI + A + V K+ CG+CTP ++GT +M + Sbjct: 33 YDGERPLSAFIGWDGIVLYNKDVDIPAMAAEYMKRVQTKY-VCGKCTPGKKGTRVIMDAL 91 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +++G ++ ++D + +V +E C L +++ P+ + +FR Sbjct: 92 AGIIEGRGKEEDLDTILDVGSVLE-HCKCTLCPSSSVPVIDAVTHFR 137 >gi|256846561|ref|ZP_05552018.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2] gi|294784148|ref|ZP_06749449.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 3_1_27] gi|256718330|gb|EEU31886.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2] gi|294488218|gb|EFG35563.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 3_1_27] Length = 435 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60 +I + ++ L GK ++ ++ + W + KI E + +++ ++ G+ G GGA F Sbjct: 81 KIESRVFPLTGKVMTIFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 140 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K + P D L++N E EP D +M P +++EG I + Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197 Query: 121 AFIYVRGEFIRERESLQAAVD 141 ++ + ES++ A + Sbjct: 198 VYVGIEDNKPEAIESMRKATE 218 >gi|237743730|ref|ZP_04574211.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1] gi|256028188|ref|ZP_05442022.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D11] gi|260495794|ref|ZP_05815915.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33] gi|289766120|ref|ZP_06525498.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11] gi|229432761|gb|EEO42973.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1] gi|260196641|gb|EEW94167.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33] gi|289717675|gb|EFD81687.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11] Length = 438 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60 +I + ++ L GK ++ ++ + W + KI E + +++ ++ G+ G GGA F Sbjct: 81 KIESRVFPLTGKVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATF 140 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K + P D L++N E EP D +M P +++EG I + Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197 Query: 121 AFIYVRGEFIRERESLQAAVD 141 ++ + ES++ A + Sbjct: 198 VYVGIEDNKPEAIESMRKATE 218 >gi|46202219|ref|ZP_00053559.2| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Magnetospirillum magnetotacticum MS-1] Length = 498 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 41/263 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 + I V +G+ G GGA F + +K + + L++N E EP TC DR +MR Sbjct: 125 NEIKTRVAEAGIVGLGGATFPSAVKLGLGGQ---HKLEILLLNGAECEPYLTCDDR-VMR 180 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +++G I + A+GA I V + ESL+A + ++G + Sbjct: 181 EFAAQVVDGARIMAHALGAPKVIIAVEDNKPQAVESLKAEAAKTPNVEVVGVPVQ----- 235 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 Y G E L +++ G++ R A+VG+ V+NV + V Sbjct: 236 ----------YPMGAERHLTQAVTGRETPAR---KLTADVGV-----VVHNVATARAVHQ 277 Query: 220 ILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G S ++ ++S G V P +E + EL++ CGGI Sbjct: 278 AVRLGRPLVS----------RVVTVSGGGVAEPKNIEVPLGTKVSELLD-FCGGISKATK 326 Query: 279 NLLAVIP-GGSSVPCLPAGQMRG 300 +++ P G +P L ++G Sbjct: 327 RVISGGPMMGQPLPSLDVAVVKG 349 >gi|257095915|ref|YP_003169556.1| RnfABCDGE type electron transport complex subunit C [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048439|gb|ACV37627.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 508 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 26/182 (14%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I A+G+ G GGA F +K++ ++ + L+VN E EP D IMR Sbjct: 132 IARRTAAAGVVGLGGATFPAAVKFNLGRRL---KVSTLIVNGGECEPYLSSDDRIMRDRA 188 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 +++G I +AIGA A + + E QA A+ G ++ Sbjct: 189 DEVVDGLRIVMYAIGAGEALVGI------EDNKPQAIAAMRVAAAAFG---------NVH 233 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 V Y G + L+++L GK+ PA+ V+NV + A V LR Sbjct: 234 VRPVPARYPMGSDKQLIQTLTGKE--------VPADARAAEVGVLVHNVSTCAAVHRALR 285 Query: 223 RG 224 RG Sbjct: 286 RG 287 >gi|77465208|ref|YP_354711.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1] gi|77389626|gb|ABA80810.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1] Length = 517 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 + I +V +G+ G GGA F + +K + K H LV+N E EP TC DR +MR Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYDL---HTLVINGAECEPYLTCDDR-LMR 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + +G I + A+G + + ++Q D+ Sbjct: 192 ERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQ--------------RFDRALDI 237 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G S ++ ++SG V P V + E++ HCGG D Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEPD 338 Query: 279 NLL 281 LL Sbjct: 339 RLL 341 >gi|281422077|ref|ZP_06253076.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella copri DSM 18205] gi|281403866|gb|EFB34546.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella copri DSM 18205] Length = 450 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 59/273 (21%), Positives = 104/273 (38%), Gaps = 38/273 (13%) Query: 12 LYGLQGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 + ++G +S+ R + ++ E + I+N +K +GL G GGAGF T +K P Sbjct: 98 IINVEGDEWEESIDRSDKLETLEAHAELTPEEIVNRIKVAGLTGMGGAGFPTFIKLCPPP 157 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + +++N E EP D +M ++ G + A +I Sbjct: 158 ---GAKAECVIINGVECEPYITADYRLMMEHADEILVGLNLLMKAAQVEKGYI------- 207 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 +++ + + K D I + A Y G E L++++ + Q Sbjct: 208 --------GIEDNKPAAIKLFEEKTANDARIEIVPLAKKYPQGGEKQLVDAV--IRRQVP 257 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVN 249 P P NVG V NV + V Y + + +++G V Sbjct: 258 APPAIPVNVG-----AIVQNVGTAFAV----------YQAVMKNKPLFERYTTVTGKQVK 302 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 P M F ++IE +CGG+ G + +LA Sbjct: 303 NPGNFLVRMGTPFSQMIE-NCGGLPEGDNKVLA 334 >gi|237859138|gb|ACR23742.1| RnfC [Acetobacterium woodii DSM 1030] Length = 443 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 36/232 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I V +G+ G GGA F T +K + P D +V+N E EP D +M Sbjct: 125 DAIKKMVLNAGIVGLGGATFPTHVKLAIPPDKKVD---CVVLNGAECEPYLTADHHLMTS 181 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 + ++ G +A ++G FI V E+L A+ G++S+L Sbjct: 182 QAEKVVMGLKLAMKSVGVEKGFIGVEDNKTDAIEALVKAI---------GNDSRLE---- 228 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 V+ Y G E L+ ++ G++ PA+ G+ V NV + A + Sbjct: 229 --VYSLHTKYPQGAEKQLIAAITGREVPSGA---LPADAGV-----VVMNVGTAAQIAES 278 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 + G Y + L + P T+E + + F +I++ CGG Sbjct: 279 MITGLPLYKRY---------LTCTGDAIKNPQTIEIRIGVPFQSVIDQ-CGG 320 >gi|167856054|ref|ZP_02478797.1| electron transport complex protein RnfC [Haemophilus parasuis 29755] gi|167852803|gb|EDS24074.1| electron transport complex protein RnfC [Haemophilus parasuis 29755] Length = 629 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L D II +V +G+ G GGA F T K K C L++N E EP Sbjct: 126 IDDFLSLTSDQIIQKVYQAGIAGLGGAVFPTSHKLHVADKRCK----LLIINGAECEPYI 181 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ +IEG I + + I + + ++++ A L G Sbjct: 182 TCDDR-LMQDYADEMIEGVRILRYVLRPEEVLIAIEDNKPKAIQAVEKA--------LKG 232 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 +N DI V Y G L++ L G Sbjct: 233 AN-------DISVRVIPTKYPSGASDQLVQVLTG 259 >gi|332560814|ref|ZP_08415132.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N] gi|332274612|gb|EGJ19928.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N] Length = 517 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 + I +V +G+ G GGA F + +K + K H LV+N E EP TC DR +MR Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYDL---HTLVINGAECEPYLTCDDR-LMR 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + +G I + A+G + + ++Q D+ Sbjct: 192 ERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQ--------------RFDRALDI 237 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G S ++ ++SG V P V + E++ HCGG D Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEPD 338 Query: 279 NLL 281 LL Sbjct: 339 RLL 341 >gi|313886233|ref|ZP_07819962.1| electron transport complex, RnfABCDGE type, C subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924304|gb|EFR35084.1| electron transport complex, RnfABCDGE type, C subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 450 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHW----DNVDKI---LEKGRDWIINEVKASGLRG 54 +T D+I T+ G + ++ + W D D + +E II+ + G+ G Sbjct: 79 VTKVDQI-TDASGFKKPAVFIKVDGDEWEDYIDQTDTLVTDIELDAKQIIDRIAEMGIVG 137 Query: 55 RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114 GGA F T +K S P +D Y+++NA E EP D +MR + ++ GC I Sbjct: 138 MGGATFPTHVKLSPPPGQSAD---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMK 194 Query: 115 AIGAHCAFI 123 A A I Sbjct: 195 AANAPRTLI 203 >gi|332299855|ref|YP_004441776.1| Electron transport complex protein rnfC [Porphyromonas asaccharolytica DSM 20707] gi|332176918|gb|AEE12608.1| Electron transport complex protein rnfC [Porphyromonas asaccharolytica DSM 20707] Length = 450 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHW----DNVDKI---LEKGRDWIINEVKASGLRG 54 +T D+I T+ G + ++ + W D D + +E II+ + G+ G Sbjct: 79 VTKVDQI-TDASGFKKPAVFIKVDGDEWVDYIDQTDTLVTDIELDAKQIIDRIAEMGIVG 137 Query: 55 RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114 GGA F T +K S P +D Y+++NA E EP D +MR + ++ GC I Sbjct: 138 MGGATFPTHVKLSPPPGQSAD---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMK 194 Query: 115 AIGAHCAFI 123 A A I Sbjct: 195 AANAPRTLI 203 >gi|166031626|ref|ZP_02234455.1| hypothetical protein DORFOR_01326 [Dorea formicigenerans ATCC 27755] gi|166028603|gb|EDR47360.1| hypothetical protein DORFOR_01326 [Dorea formicigenerans ATCC 27755] Length = 611 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWP 400 +++CG+C PCR+G + R+M++++ G A ++ +D + ++ I CA+G +AA Sbjct: 49 NQTCGKCVPCRDGLPLVARLMQKVLDGRATEKTLDNIRMMATMIRSSADCAIGWNAADEV 108 Query: 401 IQGL 404 ++GL Sbjct: 109 LKGL 112 >gi|294784049|ref|ZP_06749371.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 1_1_41FAA] gi|294479861|gb|EFG27640.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 1_1_41FAA] Length = 435 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGF 60 +I +Y L GK ++ ++ + W + KI + +++ ++ G+ G GGA F Sbjct: 81 KIENRVYPLSGKVMTIFIENDKKEEWAELTKIANWETADKKELLDIIREKGIVGIGGATF 140 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K + P D L++N E EP D +M P +++EG I + Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197 Query: 121 AFIYVRGEFIRERESLQAAVD 141 ++ + ES++ A + Sbjct: 198 VYVGIEDNKPEAIESMKKATE 218 >gi|291519330|emb|CBK74551.1| electron transport complex, RnfABCDGE type, C subunit/electron transport complex, RnfABCDGE type, D subunit [Butyrivibrio fibrisolvens 16/4] Length = 760 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 14/93 (15%) Query: 30 DNVDKILEKG-----------RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +N K +EKG + II +++ +G+ G GGAGF T +K S PK + Sbjct: 100 ENDGKFIEKGFEACADYTNLSNEEIIKKIQEAGIVGMGGAGFPTHVKLS--PK-NPEAIE 156 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 +++ N E EP D M EP LIEG I Sbjct: 157 FIIANCAECEPYLTSDYRSMVEEPEKLIEGMKI 189 >gi|254302139|ref|ZP_04969497.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322331|gb|EDK87581.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 435 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 57/275 (20%), Positives = 112/275 (40%), Gaps = 51/275 (18%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60 +I + ++ L GK ++ ++ + W + KI E + +++ ++ G+ G GGA F Sbjct: 81 KIESRVFPLTGKVMTIFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 140 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T +K + P D L++N E EP D +M P +++EG I + Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVSD 197 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++ + E+++ A + G D+ I+ Y G E L++ Sbjct: 198 VYVGIEDNKPEAIETMRKATE--------------GTDIKIVPLK--TKYPQGGEKQLIK 241 Query: 181 SLEGKK---GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 S+ ++ GQ P+ VG+ V N + A + + G Sbjct: 242 SILDRQVPSGQ------LPSAVGV-----VVQNTGTAAAIYEAVVNGKPLIE-------- 282 Query: 238 GTKLFSISGH-VNYPCTVEESMSITFDELIEKHCG 271 K+ ++SG + P V+ ++ F +++ HCG Sbjct: 283 --KVVTVSGKAIKNPKNVKVAIGTPFSYILD-HCG 314 >gi|315609146|ref|ZP_07884115.1| electron transport complex protein RnfC [Prevotella buccae ATCC 33574] gi|315249216|gb|EFU29236.1| electron transport complex protein RnfC [Prevotella buccae ATCC 33574] Length = 464 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 46/277 (16%) Query: 12 LYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 + ++G +S+ R + +D E + I+N VK +G+ G GGAGF T +K P Sbjct: 98 IINVEGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPTFIKLCPPP 157 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RG 127 + + +++N E EP D +M ++ G + A +I + + Sbjct: 158 ---TAKAECVILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGYIGIEENKP 214 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 E IR L A D + + A Y G E L++++ + Sbjct: 215 EAIRLLTELTAG------------------DPRVEIVPLAQKYPQGGEKQLVDAV--IRR 254 Query: 188 QPRLKPPFPANVGLYGCPTTVNNV-ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 Q P P NVG V NV + AV +++R + + +++G Sbjct: 255 QVPAPPAIPVNVG-----AIVQNVGTAFAVYQAVMKRKPLF-----------ERYTTVTG 298 Query: 247 -HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 + P M TF +LI+ CGG+ G + +LA Sbjct: 299 KQMKQPGNFLVRMGTTFGQLID-LCGGLPEGDNKVLA 334 >gi|237751584|ref|ZP_04582064.1| formate dehydrogenase [Helicobacter bilis ATCC 43879] gi|229372950|gb|EEO23341.1| formate dehydrogenase [Helicobacter bilis ATCC 43879] Length = 928 Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 7/105 (6%) Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRVMERL- 365 KE+ + +G +++ D S DI++ + + Y++ +SCG+CTP + G + ++E+L Sbjct: 36 KEIKAFVGWDGIVIFDPSLDILQTLKIYAKQYQNYAQSCGRCTPGKYGGKVLYELLEKLQ 95 Query: 366 ----VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 V ++I+ L EV + ++ + C +G PI ++K Sbjct: 96 NYDYVSDCEALKDIEKLKEVCELMKATSKCEVGKTTPNPILQILK 140 >gi|291460671|ref|ZP_06600061.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291416630|gb|EFE90349.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 485 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ I++ V+ +G+ G GGAGF T +K S PK ++ Y +VN E EP C D M Sbjct: 151 REEIVSIVRDAGIVGLGGAGFPTAVKLS--PKE-PEKIDYFLVNGAECEPYLCSDYRDML 207 Query: 100 HEPHTLIEG 108 P LI G Sbjct: 208 EYPERLIGG 216 >gi|197117055|ref|YP_002137482.1| Fe(III) reductase subunit beta [Geobacter bemidjiensis Bem] gi|197086415|gb|ACH37686.1| Fe(III) reductase, beta subunit [Geobacter bemidjiensis Bem] Length = 670 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 61/109 (55%), Gaps = 4/109 (3%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDI--IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + YDG + + + +G +I+ ++ D+ + A + V K+ CG+CTP ++GT MM Sbjct: 31 VSYDGERPLSAFIGWDGIILYNKDVDVPAMVAEYMKRVQTKY-VCGKCTPGKKGTRVMMD 89 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + +V+G ++++D + ++ + ++ C L +++ P+ + +FR Sbjct: 90 ALLAIVEGRGSEQDLDTILDLGEVLK-HCKCTLCPSSSVPVIDAVTHFR 137 >gi|229497138|ref|ZP_04390841.1| electron transport complex protein RnfC [Porphyromonas endodontalis ATCC 35406] gi|229315955|gb|EEN81885.1| electron transport complex protein RnfC [Porphyromonas endodontalis ATCC 35406] Length = 443 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++++ G+ G GGA F T +K S P + L++NA E EP D +MR Sbjct: 126 IVDKIAEMGIVGMGGATFPTHVKLSPPP---GQKATVLIINAVECEPYLTSDDALMREHA 182 Query: 103 HTLIEGCVIASFAIG 117 ++ GC I AIG Sbjct: 183 EEIMVGCTIIMKAIG 197 >gi|116872516|ref|YP_849297.1| pduS type ferredoxin, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741394|emb|CAK20518.1| pduS type ferredoxin, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 454 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 67/320 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L+ A+ E AS + Sbjct: 59 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRLAITELNAS--------------VT 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 148 Query: 221 LRRGASW--YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276 W Y + K +++G VN P ++ + F+ C GG Sbjct: 149 ------WNVYHAIQDDAPVVRKQLTVTGAVNEPKLLDVPIGTPFEV-----CLAAAGGTN 197 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D L L G M G + D + E T+ +IV + + + K ++ Sbjct: 198 LDEYLF----------LDGGPMMGKLNDQSTIAEKVVTKTTSGLIVTEDTGYLHKLHYQT 247 Query: 337 --SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 248 VEQIFNETKSACIQCSLCSD 267 >gi|167759873|ref|ZP_02432000.1| hypothetical protein CLOSCI_02236 [Clostridium scindens ATCC 35704] gi|167662492|gb|EDS06622.1| hypothetical protein CLOSCI_02236 [Clostridium scindens ATCC 35704] Length = 442 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 22/208 (10%) Query: 8 IFTNLYGLQGKSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 IF+++YG+ + L D + + + D+ + + VK +G+ G GGAGF TG+K Sbjct: 42 IFSSVYGVVEEVLEDRIVIKPDEEQKDEFVPIKEGSKLEMVKEAGIVGMGGAGFPTGVKI 101 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 Y++VNA E EPG + + + I G A I ++ Sbjct: 102 G-----TDLHGGYILVNAAECEPGLRHNIQQIEEKTDITIRGLKYCMEISNAAKGIIAIK 156 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + + E L+ A+ + + +I +H Y GEE A++ GK Sbjct: 157 KKNEKAIEFLREAIKD---------------EDNITIHLLPDIYPMGEERAVVRECLGKL 201 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESI 214 P + P A+ + C T + E+I Sbjct: 202 LDPT-QLPSAADAVVINCETLLRIAEAI 228 >gi|291614940|ref|YP_003525097.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] gi|291585052|gb|ADE12710.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 32/189 (16%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 G+ ++ ++ +G+ G GGA F +K + P+ D LVVN E EP D IM Sbjct: 126 GKKELLEAIQQTGISGLGGATFPAHVKLNVPPETAIDT---LVVNGAECEPFLTCDHRIM 182 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 L+ G A A GA A I V++ + + L D Sbjct: 183 VERTQDLLRGIRFAMQASGAPRAVI---------------GVEDNKPDAIAAIEAALPLD 227 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKK---GQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V Y G E ++ +L G++ GQ PA++G+ VNNV ++A Sbjct: 228 GTVTVKALETKYPQGAEDTIIYALLGREIPAGQ------RPASIGVL-----VNNVMTLA 276 Query: 216 VVPTILRRG 224 + +L G Sbjct: 277 YLGRLLPAG 285 >gi|307718965|ref|YP_003874497.1| transporter [Spirochaeta thermophila DSM 6192] gi|306532690|gb|ADN02224.1| transporter [Spirochaeta thermophila DSM 6192] Length = 444 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II +K +G+ G GGAGF T +K S P D L++N E EP D +M + Sbjct: 127 IIERIKDAGIVGMGGAGFPTHVKLSIPPGKAID---TLIINGVECEPYLTADHRLMLEKT 183 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G I A+G FI Sbjct: 184 DEILVGIAIIRRALGEPRVFI 204 >gi|328955432|ref|YP_004372765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Coriobacterium glomerans PW2] gi|328455756|gb|AEB06950.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Coriobacterium glomerans PW2] Length = 609 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 39/74 (52%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +SCG+CTPCR G G + +E+++ G A + + ++ ++ I + CA+G A Sbjct: 50 QSCGKCTPCRVGLGVLADQLEKVLAGRADDQTLKVIERTAETIYRSSDCAIGYEAGSMAL 109 Query: 403 GLIKNFRPLIEERI 416 I+ FR E + Sbjct: 110 TAIRGFRDDFEHHL 123 >gi|189500466|ref|YP_001959936.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium phaeobacteroides BS1] gi|189495907|gb|ACE04455.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium phaeobacteroides BS1] Length = 441 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 20/151 (13%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ II ++K +G+ G GGAGF T +K + P D +++N E EP D +M Sbjct: 121 KEDIIGKIKNAGIVGMGGAGFPTNVKLAPPPDKKIDT---IILNGAECEPFLTADHRLML 177 Query: 100 HEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 P ++EG +I S G A+I + ++++++ + G+ + K Y Sbjct: 178 ESPEEIVEGLNIITSLFGGEARAYIGIES---NKKDAIETLTSHASSKGIEVVSLKTKYP 234 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQP 189 G E L+ ++ G+ +P Sbjct: 235 Q-------------GAEKQLINAITGRTIEP 252 >gi|189346514|ref|YP_001943043.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium limicola DSM 245] gi|189340661|gb|ACD90064.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium limicola DSM 245] Length = 441 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ + SG+ G GGAGF +G+K S D +++N E EP D +M Sbjct: 121 KEEILKRITDSGIVGMGGAGFPSGVKLSPPKDKTID---TIILNGAECEPFLTADHRVMV 177 Query: 100 HEPHTLIEGC-VIASFAIGAHCAFI 123 EP +I+G +I S G A+I Sbjct: 178 EEPEAIIKGLEIITSLFQGKVSAYI 202 >gi|291549871|emb|CBL26133.1| NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Ruminococcus torques L2-14] Length = 610 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 42/78 (53%) Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 + +SCG+CTPCR G + ++ ++ G A +DL+ +S++I + C +G A Sbjct: 48 QTQSCGKCTPCRVGLWQLKNLLTDVMNGTATMETLDLIDTLSESIREGSDCPIGYEAGAM 107 Query: 401 IQGLIKNFRPLIEERIDQ 418 + +++ R EE + Q Sbjct: 108 VHKSLRDCREDYEEHVRQ 125 >gi|315650909|ref|ZP_07903950.1| electron transport protein [Eubacterium saburreum DSM 3986] gi|315486823|gb|EFU77164.1| electron transport protein [Eubacterium saburreum DSM 3986] Length = 449 Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 28/168 (16%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 V+ SGL G GGAGF T +K +F LVVNA E EP + + EP LI Sbjct: 101 VEESGLVGLGGAGFPTYIKMNF----DFGGEGILVVNAAECEPILSHNIARIEDEPEKLI 156 Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 E I + A I ++ + + L+ +D D I +H Sbjct: 157 EAMKIVMETVHAVRGIIGIKKIHEKAIDRLKEVID----------------DSTISIHEL 200 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 Y GEE ALL G +P FP++ V NVE++ Sbjct: 201 QNIYPMGEERALLRETIGILLEPE---KFPSD-----AKAVVLNVETL 240 >gi|225571531|ref|ZP_03780527.1| hypothetical protein CLOHYLEM_07629 [Clostridium hylemonae DSM 15053] gi|225159608|gb|EEG72227.1| hypothetical protein CLOHYLEM_07629 [Clostridium hylemonae DSM 15053] Length = 442 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 22/208 (10%) Query: 8 IFTNLYGLQGKSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 IF+++YG+ + D + + + D+ + + VK +G+ G GGAGF TG+K Sbjct: 42 IFSSVYGVVEEVADDRIIIKPDEEQKDEFVPIKEGTKLEMVKEAGIVGMGGAGFPTGVKI 101 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + Y++VNA E EPG + + + I G A I ++ Sbjct: 102 G-----TDLKGGYVLVNAAECEPGLRHNIQQIEEQTDITIRGLKYCMEVCNASKGIIAIK 156 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + + + L+ A+ E + I +H Y GEE A++ GK Sbjct: 157 KKNEKAIQILREAIKE---------------EDSITIHLLPDIYPMGEERAVVREALGKL 201 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESI 214 P + P A+ + C T + E+I Sbjct: 202 LDPT-QLPSAADAVVINCETLLRIAEAI 228 >gi|288926954|ref|ZP_06420851.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella buccae D17] gi|288336274|gb|EFC74658.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella buccae D17] Length = 464 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 46/277 (16%) Query: 12 LYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 + ++G +S+ R + +D E + I+N VK +G+ G GGAGF T +K P Sbjct: 98 IINVEGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPTFIKLCPPP 157 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RG 127 + + +++N E EP D +M ++ G + A +I + + Sbjct: 158 ---TAKAECVILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGYIGIEENKP 214 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 E IR L A D + + A Y G E L++++ + Sbjct: 215 EAIRLLTELTAG------------------DPRVEIVPLAQKYPQGGEKQLVDAV--IRR 254 Query: 188 QPRLKPPFPANVGLYGCPTTVNNV-ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 Q P P NVG V NV + AV +++R + + +++G Sbjct: 255 QVPAPPAIPVNVG-----GIVQNVGTAFAVYQAVMKRKPLF-----------ERYTTVTG 298 Query: 247 -HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 + P M TF +LI+ CGG+ G + +LA Sbjct: 299 KQMKQPGNFLVRMGTTFGQLID-LCGGLPEGDNKVLA 334 >gi|331268942|ref|YP_004395434.1| RnfABCDGE type electron transport complex subunit C [Clostridium botulinum BKT015925] gi|329125492|gb|AEB75437.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum BKT015925] Length = 440 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 75/328 (22%), Positives = 124/328 (37%), Gaps = 62/328 (18%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + + ++ II VK +G+ G GGA F T +K + P D +++N E Sbjct: 108 GEFTKPKNYTDMTKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAE 164 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EP D +M E + ++EG I +I + E+L+ A + Sbjct: 165 CEPYLTCDHRLMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDIP-- 222 Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 +I V Y G E L+ S+ K+ P K P A GC Sbjct: 223 -------------NIEVKALKTKYPQGAEKQLIYSVM-KREVPSGKLPADA-----GC-- 261 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDEL 265 V NV ++ V + G S ++ +++G V P + + +++ EL Sbjct: 262 IVQNVNTVREVYNAVVNGRPTTS----------RVVTVTGEAVKNPKNLRVRLGMSYREL 311 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 +E C G + ++ + VI GG MG G+ T V V+ Sbjct: 312 VEA-CDGFK---EDPVKVISGGPM---------------------MGMGISTLDVPVIKG 346 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCRE 353 S+ I+ + +V SC +C C E Sbjct: 347 SSGILCLTEKQAVLPDESSCIRCGRCAE 374 >gi|153840325|ref|ZP_01992992.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AQ3810] gi|149746012|gb|EDM57142.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AQ3810] Length = 280 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 28/178 (15%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 75 QESADALIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 130 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ LI+G I + I + ++L++A Sbjct: 131 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 174 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 + DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 175 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEVP---SGSIPADIGIL-----VQNVGSL 224 >gi|210621815|ref|ZP_03292844.1| hypothetical protein CLOHIR_00789 [Clostridium hiranonis DSM 13275] gi|210154579|gb|EEA85585.1| hypothetical protein CLOHIR_00789 [Clostridium hiranonis DSM 13275] Length = 611 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 40/76 (52%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +SCG+C PCR G + ++ +++G A IDL+ + +K I CA+G AA + Sbjct: 50 QSCGKCVPCRVGLEQLKALLTDVLEGEADLETIDLIEKTAKVIVNSADCAIGYEAARMVL 109 Query: 403 GLIKNFRPLIEERIDQ 418 ++ FR I+Q Sbjct: 110 QGVQGFRDDYVSHIEQ 125 >gi|325837597|ref|ZP_08166444.1| electron transport complex protein, RnfABCDGE type, C subunit [Turicibacter sp. HGF1] gi|325490899|gb|EGC93198.1| electron transport complex protein, RnfABCDGE type, C subunit [Turicibacter sp. HGF1] Length = 462 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 73/330 (22%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ I+ ++ +G+ G GG+GFST +K+ + + H +++N E EP D M Sbjct: 126 REDIVEMIRKNGVVGLGGSGFSTYIKY-----LNPEGIHTVLINGVECEPYLTTDYHFMF 180 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +P +G A I ++ + + L+ +DE Sbjct: 181 DQPERFFDGISFLMKAADVKKGIIAIKKGKKKLKAFLEQKIDEYQVRD------------ 228 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V+ AY G E L++++ G++ RL P+ +G TV+NV Sbjct: 229 QISVYEVPDAYPLGWEKVLIKTITGREYD-RL----PSELGF-----TVSNV-------- 270 Query: 220 ILRRGASWYSGFGRENNRG--TKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 G + + F +NR +L ++SG + P + ELI+ + GG Sbjct: 271 ----GTAIATSFAVRDNRPFIRRLVTVSGEGIKRPGLYYVRIGTPAKELIQ-----LAGG 321 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM------------D 324 + I + + G M G +M D + G ++V+ D Sbjct: 322 Y------IDDADEIKIIVGGPMMGGVMRSD---DFVISRGVNGIVVLPTKKKEGPDKGFD 372 Query: 325 RSTDIIKAIWRLSVFYKHE-----SCGQCT 349 R DI+ ++ V + + SCG+CT Sbjct: 373 RIKDILWPNYKKEVIMEKDEQPCVSCGRCT 402 >gi|166031622|ref|ZP_02234451.1| hypothetical protein DORFOR_01322 [Dorea formicigenerans ATCC 27755] gi|166028599|gb|EDR47356.1| hypothetical protein DORFOR_01322 [Dorea formicigenerans ATCC 27755] Length = 610 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR G G + ++ +++ G A +D + + +K+I CA+G +AA Sbjct: 50 QTCGKCVPCRVGLGQLNHLIRKVLNGNATMETLDTMEQTAKSIMESADCAIGYEAAHMVY 109 Query: 402 QGLI 405 +GLI Sbjct: 110 KGLI 113 >gi|282601058|ref|ZP_05980581.2| Na(+)-translocating NADH-quinone reductase, A subunit [Subdoligranulum variabile DSM 15176] gi|282570492|gb|EFB76027.1| Na(+)-translocating NADH-quinone reductase, A subunit [Subdoligranulum variabile DSM 15176] Length = 456 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 43/240 (17%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 + ++ ++A GL G GGAGF T +K + +D L++NA E EP D M Sbjct: 131 KASLLAAIQACGLVGVGGAGFPTHVKLA------ADTVDTLLINAAECEPYLTTDCREML 184 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 T+I G I A + + I + +D+ Y+ + + G V Sbjct: 185 ECSDTIISG-------IAAVMKYCNIPNCIIGIERNKPECIDQMYSL----TRNMSGVSV 233 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP----FPANVGLYGCPTTVNNVESIA 215 + Y G E L+E+ G++ P++ P PA+VG + NV S++ Sbjct: 234 KPLPTR----YPQGAEKTLVETCTGRE-VPQVGPSGKAGLPADVGCI-----IMNVTSVS 283 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 + L+ G TK ++ G + P VE + + ++IE CGGI+ Sbjct: 284 TLGKYLKTGMPLT----------TKRVTVEGDAIAKPQNVEVPIGTLYRDVIE-ACGGIK 332 >gi|293374729|ref|ZP_06621037.1| electron transport complex, RnfABCDGE type, C subunit [Turicibacter sanguinis PC909] gi|292646643|gb|EFF64645.1| electron transport complex, RnfABCDGE type, C subunit [Turicibacter sanguinis PC909] Length = 462 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 73/330 (22%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ I+ ++ +G+ G GG+GFST +K+ + + H +++N E EP D M Sbjct: 126 REDIVEMIRKNGVVGLGGSGFSTYIKY-----LNPEGIHTVLINGVECEPYLTTDYHFMF 180 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +P +G A I ++ + + L+ +DE Sbjct: 181 DQPERFFDGISFLMKAADVKKGIIAIKKGKKKLKAFLEQKIDEYQVRD------------ 228 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V+ AY G E L++++ G++ RL P+ +G TV+NV Sbjct: 229 QISVYEVPDAYPLGWEKVLIKTITGREYD-RL----PSELGF-----TVSNV-------- 270 Query: 220 ILRRGASWYSGFGRENNRG--TKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 G + + F +NR +L ++SG + P + ELI+ + GG Sbjct: 271 ----GTAIATSFAVRDNRPFIRRLVTVSGEGIKRPGLYYVRIGTPAKELIQ-----LAGG 321 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM------------D 324 + I + + G M G +M D + G ++V+ D Sbjct: 322 Y------IDDADEIKIIVGGPMMGGVMRSD---DFVISRGVNGIVVLPTKKKEGPDKGFD 372 Query: 325 RSTDIIKAIWRLSVFYKHE-----SCGQCT 349 R DI+ ++ V + + SCG+CT Sbjct: 373 RIKDILWPNYKKEVIMEKDEQPCVSCGRCT 402 >gi|300871307|ref|YP_003786180.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000] gi|300689008|gb|ADK31679.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000] Length = 378 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 64/328 (19%), Positives = 127/328 (38%), Gaps = 44/328 (13%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L++NA KD+ + + PH +++ ++ + + I +R + +E+L A Sbjct: 69 LIINAYSFGYLVFKDKFFIDNNPHLILDSAILIAKILNIKNIDILIRSYY--NKETLINA 126 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + E A L K+ +++I ++ + F N+ Sbjct: 127 IVE--AEDLY----KIESEININIYD--------------------------ENNFRENI 154 Query: 200 GLYGC--PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 +Y ++E++ G +S +G EN++GT L S SG + E Sbjct: 155 NIYFIERQKYALDLETVIQFGYFAHMGLENFSKYGNENHKGTCLISFSGDIPNVNLHEFQ 214 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +F+E+I K G I D G + P + + YD E+ G G Sbjct: 215 FGSSFNEII-KASGYISYNNDIKCVFTNGFLNAPT-TLESLSNKSLSYD---EINIGNGG 269 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI-D 376 I +R +++ + ++ F K SC C PC G + +++ G + + + Sbjct: 270 ICFIAENRC--MLRVVMKIIQFAKSISCTNCMPCNYGFNLCEYYLNKIILGKSNSNDYKN 327 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGL 404 L+ V I+G + + + A I+ + Sbjct: 328 LVNAVEMIIKGSSCVYIYNIAKCIIETI 355 >gi|28210724|ref|NP_781668.1| rnfC/nqrF [Clostridium tetani E88] gi|28203162|gb|AAO35605.1| rnfC/nqrF [Clostridium tetani E88] Length = 449 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 14/82 (17%) Query: 27 GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G ++ V+ + RD+ IIN VK +G+ G GGA F T +K + P + Y Sbjct: 117 GQYEEVET---QKRDYTKLSNEEIINIVKEAGIVGMGGATFPTNVKLTPPP---DKKIEY 170 Query: 80 LVVNADESEPG-TCKDRDIMRH 100 +VVNA E EP TC R ++ H Sbjct: 171 IVVNAAECEPYLTCDHRMMLEH 192 >gi|51892034|ref|YP_074725.1| Na+-transporting NADH-quinone reductase subunit 1 [Symbiobacterium thermophilum IAM 14863] gi|51855723|dbj|BAD39881.1| Na+-transporting NADH-quinone reductase subunit 1 [Symbiobacterium thermophilum IAM 14863] Length = 446 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 WD + L+ +I + V+ +GL G GGAGF +K + P P +++N E E Sbjct: 117 WDLDPESLDPA--FIRDRVRQAGLVGMGGAGFPAAVKLTPKP---GTEPDVVILNGAECE 171 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 P D +M P ++ G + A GA I V Sbjct: 172 PAITSDHRLMLEHPEQVVLGLRLFMRASGAKRGIIAV 208 >gi|330502370|ref|YP_004379239.1| electron transport complex protein RnfC [Pseudomonas mendocina NK-01] gi|328916656|gb|AEB57487.1| electron transport complex protein RnfC [Pseudomonas mendocina NK-01] Length = 814 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ ++ +G+ G GGAGF T +K + P + + H L++N E EP D +MR Sbjct: 130 LLTLIREAGINGLGGAGFPTAVKLTARP---TQKIHTLIINGTECEPYITADDVLMRERA 186 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 L+ G + + I I Sbjct: 187 AELVAGIEVLAHLIQPQQVLI 207 >gi|281412300|ref|YP_003346379.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga naphthophila RKU-10] gi|281373403|gb|ADA66965.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga naphthophila RKU-10] Length = 435 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 21/198 (10%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ ++ +K +G+ G GGA F T +K S P+ D L++N E EP D +M Sbjct: 119 KEEVLEVIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIINGAECEPVLTIDHRLML 175 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +++G +I +G A + V I +L+ GY V Sbjct: 176 ERAEDILQGILIMMKVLGVQKAVVGVESNKIDAYHNLKKVFK--------------GYPV 221 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ + Y G E L+ ++ G+ PR P V + T V E++ Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITGRV-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278 Query: 220 ILRRGASWYSGFGRENNR 237 ++ RG + SG +N R Sbjct: 279 LVERGVT-VSGDAVKNPR 295 >gi|228470498|ref|ZP_04055365.1| electron transport complex protein RnfC [Porphyromonas uenonis 60-3] gi|228307794|gb|EEK16750.1| electron transport complex protein RnfC [Porphyromonas uenonis 60-3] Length = 412 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II+ + G+ G GGA F T +K S P +D Y+++NA E EP D +MR + Sbjct: 126 IIDRIAEMGIVGMGGATFPTHVKLSPPPGQSAD---YVIINAVECEPYLTSDDALMRVKA 182 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ GC I A A I Sbjct: 183 MEIMVGCAIIMKAANAPRTLI 203 >gi|227872438|ref|ZP_03990781.1| glutamate synthase (NADPH) small subunit [Oribacterium sinus F0268] gi|227841717|gb|EEJ52004.1| glutamate synthase (NADPH) small subunit [Oribacterium sinus F0268] Length = 611 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +SCG+CTPCR G G + ++E ++ G A + + + ++ I CA+G AA + Sbjct: 50 QSCGKCTPCRVGLGQLEGLIESVLDGSADMDTLKTIEKTAEGIYNSADCAIGFEAAKMVL 109 Query: 403 GLIKNFRPLIEERIDQYHRC 422 I+ F E + Q+ RC Sbjct: 110 RGIRGFYEDYAEHV-QHGRC 128 >gi|221369207|ref|YP_002520303.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides KD131] gi|221162259|gb|ACM03230.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides KD131] Length = 517 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 + I +V +G+ G GGA F + +K + K H LV+N E EP TC DR +MR Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYDL---HTLVINGAECEPYLTCDDR-LMR 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + +G I + A+G + + ++Q D+ Sbjct: 192 ERAEEIADGVGIMARALGVRQIVVAIESNKAEAISAMQ--------------RFDRALDI 237 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G S ++ ++SG V P V + E+I +CGG D Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEPD 338 Query: 279 NLL 281 LL Sbjct: 339 RLL 341 >gi|331091237|ref|ZP_08340078.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404684|gb|EGG84223.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium 2_1_46FAA] Length = 444 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 V + E ++ II+ +K +G+ G GGAGF T +K S PK ++ Y++ N E EP Sbjct: 119 VKPLEEMTKEEIIDRIKEAGIVGMGGAGFPTHVKLS--PKE-PEKIDYVIANCAECEPYI 175 Query: 92 CKDRDIMRHEPHTLIEG 108 D M P LI G Sbjct: 176 TADYRRMLENPEELISG 192 >gi|206900502|ref|YP_002250813.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus thermophilum H-6-12] gi|206739605|gb|ACI18663.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus thermophilum H-6-12] Length = 437 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 +W N+ D I ++ +G+ G GGA F T +K S P+ D +++N E Sbjct: 116 NWQNLSP------DEIKTRIREAGIVGLGGAAFPTHVKVSPPPEKKIDT---VILNGAEC 166 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 EP D +M +P +IEG I + +G I V E L+ D Sbjct: 167 EPYLTIDYRLMLEKPELIIEGLRILMYVLGVKRGIIGVEDNKKDAVEVLKKYAD 220 >gi|39995617|ref|NP_951568.1| Fe(III) reductase subunit beta [Geobacter sulfurreducens PCA] gi|39982380|gb|AAR33841.1| Fe(III) reductase, beta subunit [Geobacter sulfurreducens PCA] gi|298504639|gb|ADI83362.1| Fe(III) reductase, beta subunit [Geobacter sulfurreducens KN400] Length = 672 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 306 DGLKEMGSGLGTAAVIVMDRSTDI-IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 DG +++ + +G +I+ D D+ A + CG+CTP ++GT + V+ Sbjct: 34 DGERQIAAFMGWDGIILYDLKVDVPAMAAEYMKRVQTQYCCGKCTPGKKGTKVLADVLAA 93 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +++G A + ++D + +++ ++ C L ++ P+ +K+FR Sbjct: 94 IIEGRATEADLDTIDDLA-DLLTNCKCTLCQSSTIPVLDAVKHFR 137 >gi|297578621|ref|ZP_06940549.1| electron transport complex protein RnfC [Vibrio cholerae RC385] gi|297536215|gb|EFH75048.1| electron transport complex protein RnfC [Vibrio cholerae RC385] Length = 862 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 34/180 (18%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRSEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 H +I+G I + I + +LQ A D Sbjct: 190 YAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVTALQQA----------------AQDKP 233 Query: 161 IIVHHGAGAYICGEETAL---LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 +++ Y G E L L +LE KG PA++GL V NV S+ + Sbjct: 234 MVIRVIPTKYPSGGEKQLIKILTNLEVPKGG------IPADIGLM-----VQNVGSLQAI 282 >gi|260655144|ref|ZP_05860632.1| Fe(III) reductase, beta subunit [Jonquetella anthropi E3_33 E1] gi|260630066|gb|EEX48260.1| Fe(III) reductase, beta subunit [Jonquetella anthropi E3_33 E1] Length = 635 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 336 LSVFYKH----ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 L+V + H +SCG+CTPCR G + ++ ++ G Q + + ++++I + C Sbjct: 64 LAVSFLHICHSQSCGKCTPCRVGLNRLQDLINAVLSGKVQLDALQTIETMAESIYLSSDC 123 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERI 416 A+G AA + ++ FR EE + Sbjct: 124 AIGQEAARMVLMGVRGFREDYEEHV 148 >gi|313638342|gb|EFS03561.1| PduS type ferredoxin, putative [Listeria seeligeri FSL S4-171] Length = 455 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 7 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A + + + E +LQAA+ E D + Sbjct: 60 VETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALQAAIQE--------------LDSSVT 105 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 W +++ K +++G V P ++ + F+ C GG Sbjct: 150 ------WNVFHAIDDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGT- 197 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336 NL S L G M G + + + E T+ +IV + + + K ++ Sbjct: 198 NL-------SEYLFLDGGPMMGKLNNQSTISEKVVTKTTSGLIVTEDTGYLHKLHYQTVE 250 Query: 337 SVFYKHES-CGQCTPCRE 353 +F + +S C QCT C + Sbjct: 251 QIFNETKSACIQCTLCTD 268 >gi|91228908|ref|ZP_01262808.1| electron transport complex protein RnfC [Vibrio alginolyticus 12G01] gi|91187539|gb|EAS73871.1| electron transport complex protein RnfC [Vibrio alginolyticus 12G01] Length = 878 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 32/179 (17%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWS--FMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 D +I+ ++ +G+ G GGAGF T K F R L+VNA E EP D +M Sbjct: 134 DALIDVIRLAGISGMGGAGFPTAKKIQSGFA------RTEILIVNAAECEPYITSDDKLM 187 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + LI+G I + I + ++L+AA + Sbjct: 188 QEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------AIN 231 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 DI++ Y G E L++ L K+ PA++G+ V NV S+ + Sbjct: 232 KDIVIRVIPTKYPSGGEKQLIKILTNKEVPSGA---IPADIGIL-----VQNVGSLYAI 282 >gi|302381047|ref|ZP_07269507.1| putative electron transport complex protein RnfC [Finegoldia magna ACS-171-V-Col3] gi|302311094|gb|EFK93115.1| putative electron transport complex protein RnfC [Finegoldia magna ACS-171-V-Col3] Length = 442 Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%) Query: 21 SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 SD ++ G+ + D + ++ I+ +K +G+ G GGAGF T +K + P V + Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDV---KIEQ 159 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +++N E EP D+ M P I G I + +I V ++ Q A Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + G+L + SK ++ I Y G+E L+ ++ GKK Sbjct: 213 I------GILKNASKDEKNISIC--SVKTKYPQGDERRLINAITGKK 251 >gi|225027769|ref|ZP_03716961.1| hypothetical protein EUBHAL_02028 [Eubacterium hallii DSM 3353] gi|224954915|gb|EEG36124.1| hypothetical protein EUBHAL_02028 [Eubacterium hallii DSM 3353] Length = 617 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 39/82 (47%) Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + ++CG+C PCR G G + ++E ++ G A + L+ +K I CA+G A Sbjct: 50 LFHAQTCGKCVPCRIGLGVLEDMLEDVLDGKATLETLSLIERTAKAIYDSADCAIGYEAG 109 Query: 399 WPIQGLIKNFRPLIEERIDQYH 420 + ++ FR E I H Sbjct: 110 RMVLKGLEGFREDFIEHITNGH 131 >gi|254433139|ref|ZP_05046647.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Nitrosococcus oceani AFC27] gi|207089472|gb|EDZ66743.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Nitrosococcus oceani AFC27] Length = 491 Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 N ++ +G+ G GGAGF T +K + P+ + L++N E EP D +MR Sbjct: 107 NLIRQAGIVGLGGAGFPTFIKLNPGPQ---PKVKTLILNGAECEPYITCDEALMRERAEE 163 Query: 105 LIEGCVIASFAIGA-HC 120 +I+G I + A+ A HC Sbjct: 164 IIQGAAIMAHALNAYHC 180 >gi|77164681|ref|YP_343206.1| electron transport complex protein RnfC [Nitrosococcus oceani ATCC 19707] gi|76882995|gb|ABA57676.1| Electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus oceani ATCC 19707] Length = 515 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 N ++ +G+ G GGAGF T +K + P+ + L++N E EP D +MR Sbjct: 131 NLIRQAGIVGLGGAGFPTFIKLNPGPQ---PKVKTLILNGAECEPYITCDEALMRERAEE 187 Query: 105 LIEGCVIASFAIGA-HC 120 +I+G I + A+ A HC Sbjct: 188 IIQGAAIMAHALNAYHC 204 >gi|291563596|emb|CBL42412.1| electron transport complex, RnfABCDGE type, C subunit [butyrate-producing bacterium SS3/4] Length = 442 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I N VK +G+ G GGAGF T +K + PK + H ++VNA E EP D +M Sbjct: 122 KEEIRNIVKEAGIVGLGGAGFPTNVKLA--PKDDNAIDH-IIVNAAECEPYLTSDYRLMM 178 Query: 100 HEPHTLIEG 108 +P LI G Sbjct: 179 EQPERLIGG 187 >gi|332883529|gb|EGK03812.1| hypothetical protein HMPREF9456_01879 [Dysgonomonas mossii DSM 22836] Length = 430 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 18/159 (11%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + +I +K +G+ G+GGA F T +K+S V + H +VN E EP D +M Sbjct: 115 EELIERIKDTGIVGQGGAQFPTAIKYS----VGEHKIHTFIVNGAECEPYLTSDYSLMAE 170 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 L +G I + A I + + RE L+A +A L K GY Sbjct: 171 RTEELFKGIDIIKKILNADNVIIGIEHQ---NRELLKA-----FAPYLQQKEHK-GYKAI 221 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ Y G E L++S G + PR K P A + Sbjct: 222 LL----PDQYPQGGELQLIKSATGIE-LPRSKRPAEAGI 255 >gi|154503206|ref|ZP_02040266.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149] gi|153796200|gb|EDN78620.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149] Length = 457 Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust. Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 60/310 (19%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGAGF T K R +++N E EP R ++ ++ Sbjct: 19 LQQNGIVGAGGAGFPTYAKLD-------QRAETIILNCAECEPLLRLHRQLLEKYAREIV 71 Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 + + A+GA I ++ + + E++++ + E Y LG ++ Sbjct: 72 DTFHLVGQAVGAKEVIIGIKKAYKQTIEAVESVIGE-YPEVRLGLLDEV----------- 119 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 Y G+E L+ + GK +P P + V ++ NVE+I V Sbjct: 120 ---YPAGDEVVLIYEVTGKVVRPG-GLPIESGVAVF-------NVETIYNV--------- 159 Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 + ++ KL S+ V +P TV + T +E++ + G Sbjct: 160 -WRAMNQQTPVVDKLVSVVAEVEHPVTVRVPIGTTIEEVV----------------ALAG 202 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK-AIWRLSVFYKHES- 344 G++V P + G +M + G T AV+V+ + ++K + S+ K + Sbjct: 203 GTTVK-DPVYFIGGPMMGFIGSGSQPVTKTTNAVLVLPQDHYLVKRKRSKSSIDMKRAAA 261 Query: 345 -CGQCTPCRE 353 C QC+ C + Sbjct: 262 CCCQCSMCTD 271 >gi|226944038|ref|YP_002799111.1| electron transport complex protein RnfC [Azotobacter vinelandii DJ] gi|226718965|gb|ACO78136.1| Electron transport complex, subunit C [Azotobacter vinelandii DJ] Length = 688 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ ++ +G+ G GGAGF T +K + P+ + H L+VN E EP D +MR Sbjct: 129 LLERIRQAGISGLGGAGFPTAVKLTARPQ---RKIHTLIVNGAECEPYITADDRLMRERA 185 Query: 103 HTLIEGCVI 111 LI G I Sbjct: 186 AELIIGIDI 194 >gi|15643016|ref|NP_228058.1| electron transport complex protein, putative [Thermotoga maritima MSB8] gi|4980743|gb|AAD35335.1|AE001708_3 electron transport complex protein, putative [Thermotoga maritima MSB8] Length = 451 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 21/198 (10%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ +K +G+ G GGA F T +K S P+ D L+VN E EP D +M Sbjct: 135 KEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIVNGAECEPVLTIDHRLML 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +++G +I +G A + V + +L+ GY V Sbjct: 192 ERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GYPV 237 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ + Y G E L+ ++ G+ PR P V + T V E++ Sbjct: 238 DVALLR--TKYPQGAEKQLIYAITGRM-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 294 Query: 220 ILRRGASWYSGFGRENNR 237 ++ RG + SG +N + Sbjct: 295 LVERGMT-VSGDAVKNQK 311 >gi|239787506|emb|CAX83976.1| Electron transport complex protein [uncultured bacterium] Length = 490 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 41/251 (16%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-T 91 D +D I + V A+G+ G GGA F +K + +++ L++N E EP T Sbjct: 118 DPFTASAKD-ISDRVAAAGIVGLGGAAFPASVKLTLG---MNNKLETLLLNGAECEPYLT 173 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 C DR +MR +I+G I + A+GA + + E+ Q AVD + Sbjct: 174 CDDR-VMREYADEVIDGARIMAHALGAPKIVVAI------EQNKPQ-AVDRMVQAAKAFP 225 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 N ++ + V Y G E L +++ G + R A++G+ V+NV Sbjct: 226 NIEIA---SVPVQ-----YPMGSEKHLTQAITGLETPAR---KLTADLGV-----VVHNV 269 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHC 270 + V +R G S ++ ++S G V P VE + EL+ C Sbjct: 270 ATARAVHHAIRFGRPLLS----------RVVAVSGGAVAQPKNVEVPLGTLVSELV-AFC 318 Query: 271 GGIRGGWDNLL 281 GG+ G L+ Sbjct: 319 GGLVGTPARLI 329 >gi|113461204|ref|YP_719273.1| electron transport complex protein RnfC [Haemophilus somnus 129PT] gi|112823247|gb|ABI25336.1| electron transport complex protein [Haemophilus somnus 129PT] Length = 659 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 ++ L R+ +I+++ +G+ G GGA F T K + +++ L++N E EP Sbjct: 128 IEDFLTLSREQLIDKIYQAGIAGLGGAVFPTAAKI----RSANNKVKLLIINGAECEPYI 183 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRE-RESLQAAVD 141 TC DR +MR +IEG I + + A I + + E I R+SL A D Sbjct: 184 TCDDR-LMRDYSEEIIEGIRILRYILRPEKAVIAIEDNKPEAIAALRQSLHGAND 237 >gi|170717802|ref|YP_001784865.1| electron transporter subunit RnfC [Haemophilus somnus 2336] gi|168825931|gb|ACA31302.1| electron transport complex, RnfABCDGE type, C subunit [Haemophilus somnus 2336] Length = 706 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 28 HWDN---VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 W N ++ L R+ +I+++ +G+ G GGA F T K + +++ L++N Sbjct: 121 QWRNRQPIEDYLTLSREQLIDKIYQAGIAGLGGAVFPTAAKI----RSANNKVKLLIING 176 Query: 85 DESEPG-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 E EP TC DR +MR +IEG I + + A I + Sbjct: 177 AECEPYITCDDR-LMRDYSEEIIEGIRILRYILRPEKAVIAI 217 >gi|313681398|ref|YP_004059136.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase [Sulfuricurvum kujiense DSM 16994] gi|313154258|gb|ADR32936.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sulfuricurvum kujiense DSM 16994] Length = 678 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/108 (20%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMR 360 ++Y+ + +G V + + D+++ + Y+ E+CG+C P R G + Sbjct: 33 LEYNEHAHSKAFIGWDGVALFNPDVDVVRLATEYAAQYQVYSEACGRCAPGRWGGRILYD 92 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++++ +G +++ L EVS+ ++ + C +G P+ L+ +F Sbjct: 93 LLDKIARGEGSVSDMEHLKEVSRTMQETSKCEIGKTVPNPLLDLMTHF 140 >gi|126464670|ref|YP_001045783.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter sphaeroides ATCC 17029] gi|126106481|gb|ABN79011.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter sphaeroides ATCC 17029] Length = 517 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 + I +V +G+ G GGA F + +K + K H LV+N E EP TC DR +MR Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRSKYDL---HTLVINGAECEPYLTCDDR-LMR 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + +G I + A+G + + ++Q D+ Sbjct: 192 ERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQ--------------RFDRALDI 237 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G S ++ ++SG V P V + E+I +CGG D Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEPD 338 Query: 279 NLL 281 LL Sbjct: 339 RLL 341 >gi|291522098|emb|CBK80391.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus catus GD/7] Length = 442 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIM 98 ++ I VK SGL G GGAGF +K + PK D+ YL +NA E EP D R+IM Sbjct: 128 KEEFIEAVKQSGLVGLGGAGFPAHIKLN--PK---DKIEYLCINAAECEPYITADVREIM 182 Query: 99 RHEPHTL 105 + + L Sbjct: 183 ENHENVL 189 >gi|289434387|ref|YP_003464259.1| propanediol utilization protein PduS [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170631|emb|CBH27171.1| propanediol utilization protein PduS [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 451 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A + + + E +L+AA+ E D + Sbjct: 56 VETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALRAAIQE--------------LDSSVT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 W +++ K +++G V P ++ + F+ C GG Sbjct: 146 ------WNVFHAIDDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGT- 193 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336 NL S L G M G + + L E T+ +IV + + + K ++ Sbjct: 194 NL-------SEYLFLDGGPMMGKLNNQSSLAEKVVTKTTSGLIVTEDTGYLHKLHYQTVE 246 Query: 337 SVFYKHES-CGQCTPCRE 353 +F + +S C QCT C + Sbjct: 247 QIFNETKSACIQCTLCTD 264 >gi|160895200|ref|ZP_02075972.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50] gi|156863079|gb|EDO56510.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50] Length = 443 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 38/248 (15%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 +NV + R+ I + +K +G+ G GGAGF + +K S PK D Y++VN E EP Sbjct: 114 ENVRDLSTLYREDIKDMIKEAGIVGMGGAGFPSHVKLS--PK-NEDDIEYIIVNGAECEP 170 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D M E LI G I C ++ + + I A+++ + Sbjct: 171 YLTSDYRRMLEETEKLILGLQI--------CVNLFDKAKGI-------IAIEDNKPEAIA 215 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 + L + I V Y G E L+ + G+ ++ PA+ G V+ Sbjct: 216 KISEHLADNDKIEVKVLKTKYPQGAERQLIYATTGRYVNSKM---LPADAG-----CIVH 267 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 N ++I + + G Y T++ +++G + PC + + E+IE Sbjct: 268 NTDTIVSIYEAVIEGKPLY----------TRIVTVTGDAIVNPCNLLVHNGTSCREIIEA 317 Query: 269 HCGGIRGG 276 GG + G Sbjct: 318 -AGGFKDG 324 >gi|317472986|ref|ZP_07932289.1| pyridine nucleotide-disulfide oxidoreductase [Anaerostipes sp. 3_2_56FAA] gi|316899531|gb|EFV21542.1| pyridine nucleotide-disulfide oxidoreductase [Anaerostipes sp. 3_2_56FAA] Length = 610 Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G G + ++ ++ G A + L+ + +++I CA+G AA + Sbjct: 50 QTCGKCVPCRIGLGQLKNLINDVLDGKATIETLGLIRDTAQSIMDSADCAIGYEAANMVY 109 Query: 403 GLIKNFRPLIEERIDQYHRC 422 + FR E I Y+RC Sbjct: 110 KGVIGFRDDYLEHI-MYNRC 128 >gi|251779641|ref|ZP_04822561.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083956|gb|EES49846.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 611 Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAW 399 + ++CG+C PCR G + +++ ++ A IDL+ +++K + CA+G +AA Sbjct: 48 QAQTCGKCVPCRIGLAQLENLIDDVLNRKATLETIDLIEKIAKVVIDSADCAIGYEAANM 107 Query: 400 PIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++G++ IE ++ CN Sbjct: 108 VLKGIVGFKSDYIEHIVNNRCICNLN 133 >gi|226322497|ref|ZP_03798015.1| hypothetical protein COPCOM_00268 [Coprococcus comes ATCC 27758] gi|225209114|gb|EEG91468.1| hypothetical protein COPCOM_00268 [Coprococcus comes ATCC 27758] Length = 610 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 D+ +A L + + H +CG+C PCR G + ++ ++ G A +DL+ E+S +I Sbjct: 37 VDMTRAF--LEMCHTH-TCGKCVPCRVGLWQLKNLLTDVMNGDATMETLDLMEELSVSIM 93 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 CA+G AA + + R EE + Q RC Q Sbjct: 94 EGADCAIGYEAAHMVYKSLMGCREDYEEHVRQ-GRCTCQ 131 >gi|118442918|ref|YP_877660.1| rnfC/nqrF [Clostridium novyi NT] gi|118133374|gb|ABK60418.1| rnfC/nqrF [Clostridium novyi NT] Length = 439 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 77/352 (21%), Positives = 135/352 (38%), Gaps = 72/352 (20%) Query: 17 GKSLSDSMSR-GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSF 68 GKSL+ + G ++ ++ + K +D+ II VK +G+ G GGA F T +K + Sbjct: 92 GKSLAVIVENDGQYEEIE--MPKPKDYKTMSKEEIIELVKEAGVVGMGGATFPTNVKLAP 149 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 P + ++VN E EP D +M E + ++EG I +I V Sbjct: 150 PP---DKKIDAIIVNGAECEPYLTCDHRLMLEETNMIVEGLKIILQIHPQAKGYIGVEDN 206 Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 E+L+ A + +I V Y G E L+ S+ K+ Sbjct: 207 KKNAIEALKQATKDIP---------------NIEVKALKTKYPQGAEKQLIYSV-MKREV 250 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH- 247 P K PA+ G V N+ ++ V + G S ++ +++G Sbjct: 251 PSGK--LPADAG-----CIVQNINTVREVYNAVVNGRPTIS----------RVVTVTGEA 293 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 + P + + +++ EL++ C G + + + VI GG Sbjct: 294 IKNPKNLRVRLGMSYKELVD-ACEGFK---EEAVKVISGGPM------------------ 331 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MG + T V V+ S+ I+ + +V + SC +C C E + Sbjct: 332 ---MGMAVSTLEVPVIKGSSGILCLTEKQAVLPEESSCIRCGRCVEACPMFL 380 >gi|307249377|ref|ZP_07531370.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858599|gb|EFM90662.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 645 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|167745462|ref|ZP_02417589.1| hypothetical protein ANACAC_00153 [Anaerostipes caccae DSM 14662] gi|167655183|gb|EDR99312.1| hypothetical protein ANACAC_00153 [Anaerostipes caccae DSM 14662] Length = 610 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G G + ++ ++ G A + L+ + +++I CA+G AA + Sbjct: 50 QTCGKCVPCRIGLGQLKNLINDVLDGKATIETLGLIRDTAQSIMDSADCAIGYEAANMVY 109 Query: 403 GLIKNFRPLIEERIDQYHRC 422 + FR E I Y+RC Sbjct: 110 KGVIGFRDDYLEHI-MYNRC 128 >gi|319940503|ref|ZP_08014848.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sutterella wadsworthensis 3_1_45B] gi|319806129|gb|EFW02878.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sutterella wadsworthensis 3_1_45B] Length = 622 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR+G + ++M R+V AQ ++ L +++ I + CA+G DAA + Sbjct: 60 QTCGKCVPCRDGLPQLAKLMRRIVDCEAQPEDLGRLKTLAEFIRLGSDCAIGYDAAQMVL 119 Query: 402 QGLIK 406 + L + Sbjct: 120 ESLTR 124 >gi|307247153|ref|ZP_07529205.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856402|gb|EFM88553.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 684 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|307244979|ref|ZP_07527076.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253932|ref|ZP_07535784.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258386|ref|ZP_07540127.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854144|gb|EFM86352.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863136|gb|EFM95078.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867570|gb|EFM99417.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 725 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|56476887|ref|YP_158476.1| electron transport complex protein rnfC (nitrogen fixation protein rnfC) [Aromatoleum aromaticum EbN1] gi|56312930|emb|CAI07575.1| Electron transport complex protein rnfC (Nitrogen fixation protein rnfC) [Aromatoleum aromaticum EbN1] Length = 508 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 111/276 (40%), Gaps = 52/276 (18%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101 I V A+G+ G GGA F + +K S + D L++N E EP +C DR +MR Sbjct: 133 IGRRVSAAGIVGLGGAAFPSAVKLSGGREANVD---LLIINGGECEPFLSCDDR-LMRER 188 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 I+G I A GA A I + D + + G+ I Sbjct: 189 AADAIDGVAIMLHATGAREARIGIE--------------DNKPEAIAAMRAAAAGHP-KI 233 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPF---PANVGLYGCPTTVNNVESIAVVP 218 V Y G E L+ +L G L+ P PA+VG+ V+NV + V Sbjct: 234 RVEPVPTRYPMGSEKHLVLALTG------LEVPANGRPADVGV-----VVHNVATAVAVR 282 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI---R 274 +R G S +L +++G V P VE + DE++E CGG+ R Sbjct: 283 DAVRFGRPLVS----------RLVTVNGACVREPGNVEVLIGTLADEVVE-FCGGLRADR 331 Query: 275 GGWDNLLAVIP-GGSSVPCL--PAGQMRGAIMDYDG 307 G LL P G VP L P + G I+ DG Sbjct: 332 GAPARLLLGGPMTGMQVPSLRVPVIKGTGGILVLDG 367 >gi|307251697|ref|ZP_07533602.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860894|gb|EFM92902.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 685 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|307256193|ref|ZP_07537980.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865374|gb|EFM97270.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 661 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIEDN---KPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|303251991|ref|ZP_07338162.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649421|gb|EFL79606.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 729 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|310780118|ref|YP_003968450.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309749441|gb|ADO84102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 447 Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 57/323 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ +++ +G+ G GGAGF T +K+S D+ YL+VN E EP D+ +MR + Sbjct: 3 IVQKIREAGIVGAGGAGFPTHIKFSV------DKVDYLLVNGAECEPLLQIDKYLMREKA 56 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 +I+ I A I ++G++ E L+ A+ L S K Sbjct: 57 SEIIKILEQLGDRIQAKEIHIALKGKYKSEITELENAIKN------LNSRVK-------- 102 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 + Y G+E ++ + G + P P V + T VN Sbjct: 103 IFKMGTYYPAGDEQQIVFEVTG-RTVPEAGIPLDVGVIVTNVGTLVN------------- 148 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 Y + K SI G V P ++ + +TF++ IE G DN Sbjct: 149 ----IYEAVDSDKPVVDKCLSIHGEVKKPLIIKTPIGMTFEKCIEAAGG---ATIDNYKI 201 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 ++ G M G ++ + LK+ T A+IV+ + I+R KH Sbjct: 202 IV----------GGPMMGKVIVKESLKKEVVTKTTGALIVVPEDHYM---IYRNGKTVKH 248 Query: 343 ---ESCGQCTPCREGTGWMMRVM 362 E+ C CR T R + Sbjct: 249 IVNEAKSACIQCRMCTDLCPRYL 271 >gi|307260625|ref|ZP_07542317.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869702|gb|EFN01487.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 770 Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|53728861|ref|ZP_00348259.1| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207655|ref|YP_001052880.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae L20] gi|126096447|gb|ABN73275.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 770 Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ H +EG I + + + + + +++QA L G Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 SN DI + Y G L++ L G Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265 >gi|303250916|ref|ZP_07337107.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650222|gb|EFL80387.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 770 Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAI 116 TC DR +M+ H +EG I + + Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVL 212 >gi|165975623|ref|YP_001651216.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875724|gb|ABY68772.1| putative iron-sulfur binding NADH dehydrogenase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 770 Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAI 116 TC DR +M+ H +EG I + + Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVL 212 >gi|190149438|ref|YP_001967963.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262757|ref|ZP_07544384.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914569|gb|ACE60821.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871902|gb|EFN03619.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 770 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAI 116 TC DR +M+ H +EG I + + Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVL 212 >gi|168186752|ref|ZP_02621387.1| electron transport complex protein RnfC [Clostridium botulinum C str. Eklund] gi|169295307|gb|EDS77440.1| electron transport complex protein RnfC [Clostridium botulinum C str. Eklund] Length = 439 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 71/321 (22%), Positives = 121/321 (37%), Gaps = 62/321 (19%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ II VK +G+ G GGA F T +K + P D ++VN E EP D +M Sbjct: 121 KEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIIVNGAECEPYLTCDHRLML 177 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 E + ++EG + +I + E+L+ A + Sbjct: 178 EETNMIVEGLKVILHIHPQAKGYIGIEDNKKNAIEALKEATKDIP--------------- 222 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I V Y G E L+ S+ K+ P K PA+ G V N+ ++ V Sbjct: 223 NIEVKALKTKYPQGAEKQLIYSV-MKREVPSGK--LPADAG-----CIVQNINTVREVYN 274 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 + G S ++ +I+G + P + + +++ EL+E C G + + Sbjct: 275 AVVNGRPTIS----------RVVTITGEAIKNPKNLRVRLGMSYRELVEA-CEGFK---E 320 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 + VI GG MG + T V V+ S+ I+ + +V Sbjct: 321 EAVKVISGGPM---------------------MGMAISTLDVPVIKGSSGILCLTEKQAV 359 Query: 339 FYKHESCGQCTPCREGTGWMM 359 + SC +C C E + Sbjct: 360 LPEESSCIRCGRCVEACPMFL 380 >gi|160932756|ref|ZP_02080145.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753] gi|156867830|gb|EDO61202.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753] Length = 444 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 76/354 (21%), Positives = 130/354 (36%), Gaps = 59/354 (16%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 W+ ++ + ++ +ASGL G GGAGF +K + +P+ + L++N E E Sbjct: 111 WEGLEPPKVETHQDLVKAARASGLVGLGGAGFPAHIKLN-VPE--GRKIDTLIINVAECE 167 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D ++ G + + I V + + + + E S Sbjct: 168 PYITADHREALENSWDVLSGIYLVKDLLNIDRTLIAVE----KNKPDVIKVLSEIAYSDT 223 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 +K + V Y G E L+++ G++ P P++VG V Sbjct: 224 RDPENK------VRVLPLKARYPQGAEKVLVQACTGRRIGPGK---LPSDVGCL-----V 269 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 NV SIA + L+ G S K ++ G V P V + +++IE Sbjct: 270 MNVTSIAFLSRYLKTGMPLVS----------KRITVDGSAVMEPKNVIVPLGTPIEKVIE 319 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 CGG RG +L G M G +D D L V+ ++ Sbjct: 320 -FCGGYRGDPAKILM------------GGPMMGLALDSDALP------------VLKQNN 354 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 I+ + +V +C C C EG M +M + ++ID L ++ Sbjct: 355 AILAFQEQDAVLPAPTACIHCGRCVEGCP--MHLMPPEISRAVTTKDIDQLQKL 406 >gi|327479772|gb|AEA83082.1| electron transport complex protein RnfC [Pseudomonas stutzeri DSM 4166] Length = 827 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R ++ ++ +G+ G GGAGF T +K + P + R L++N E EP D +MR Sbjct: 126 RPALLELIRQAGISGLGGAGFPTAVKLTPPP---TQRIRTLIINGTECEPYITADDLLMR 182 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 + L+ G I + + I + +++AA+ E Sbjct: 183 EKAAELVAGIEILAHLVQPQDVLIGIEDNKPEAIAAVRAAIGE 225 >gi|262393720|ref|YP_003285574.1| electron transport complex protein RnfC [Vibrio sp. Ex25] gi|262337314|gb|ACY51109.1| electron transport complex protein RnfC [Vibrio sp. Ex25] Length = 916 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 24/148 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWS--FMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 D +I+ ++ +G+ G GGAGF T K F R L+VNA E EP D +M Sbjct: 134 DALIDIIRLAGISGMGGAGFPTAKKIQSGFA------RTEILIVNAAECEPYITSDDKLM 187 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + LI+G I + I + ++L+AA + Sbjct: 188 QEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------ALN 231 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKK 186 DI++ Y G E L++ L K+ Sbjct: 232 KDIVIRVIPTKYPSGGEKQLIKILTNKE 259 >gi|146281594|ref|YP_001171747.1| electron transport complex protein RnfC [Pseudomonas stutzeri A1501] gi|145569799|gb|ABP78905.1| electron transport complex protein rnfC [Pseudomonas stutzeri A1501] Length = 827 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R ++ ++ +G+ G GGAGF T +K + P + R L++N E EP D +MR Sbjct: 126 RPALLELIRQAGISGLGGAGFPTAVKLTPPP---TQRIRTLIINGTECEPYITADDLLMR 182 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 + L+ G I + + I + +++AA+ E Sbjct: 183 EKAAELVAGIEILAHLVQPQDVLIGIEDNKPEAIAAVRAAIGE 225 >gi|219681490|ref|YP_002467875.1| membrane protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471170|ref|ZP_05635169.1| membrane protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624333|gb|ACL30488.1| membrane protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 473 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I + SG+ G GG F + K F +R H L+VNA ESEP D ++ + Sbjct: 95 LIKIIHQSGVVGLGGGQFPSSKKIIF----SMNRAHTLIVNAVESEPYITSDNCLIYNHI 150 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ GC I + I ++ + I+ +Q + +K + + II Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHLIK-----------NKSLFKICII 199 Query: 163 VHHGAGAYICGEETALLESLEGK 185 Y G L++SL GK Sbjct: 200 ----KKKYPAGSSKVLVKSLTGK 218 >gi|169824043|ref|YP_001691654.1| electron transport complex protein [Finegoldia magna ATCC 29328] gi|167830848|dbj|BAG07764.1| electron transport complex protein [Finegoldia magna ATCC 29328] Length = 442 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%) Query: 21 SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 SD ++ G+ + D + ++ I+ +K +G+ G GGAGF T +K + P V + Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDV---KIEQ 159 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +++N E EP D+ M P I G I + +I V ++ Q A Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + G+L + +K ++ I Y G+E L+ ++ GKK Sbjct: 213 I------GILKNAAKDEKNISIC--SVKTKYPQGDERRLINAITGKK 251 >gi|153215071|ref|ZP_01949788.1| RnfC-related protein [Vibrio cholerae 1587] gi|124114934|gb|EAY33754.1| RnfC-related protein [Vibrio cholerae 1587] Length = 505 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGVEIVEHILKPKLTII 212 >gi|303235326|ref|ZP_07321944.1| putative electron transport complex protein RnfC [Finegoldia magna BVS033A4] gi|302493640|gb|EFL53428.1| putative electron transport complex protein RnfC [Finegoldia magna BVS033A4] Length = 442 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%) Query: 21 SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 SD ++ G+ + D + ++ I+ +K +G+ G GGAGF T +K + P V + Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDV---KIEQ 159 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +++N E EP D+ M P I G I + +I V ++ Q A Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + G+L + +K ++ I Y G+E L+ ++ GKK Sbjct: 213 I------GILKNAAKDEKNISIC--SVKTKYPQGDERRLINAITGKK 251 >gi|197303563|ref|ZP_03168602.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC 29176] gi|197297561|gb|EDY32122.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC 29176] Length = 439 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 17/124 (13%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 + V + E R+ II+++ +G+ G GGAGF T +K S PK +D+ Y++ N Sbjct: 107 EAEYAPVKPLNEMTREEIISKIGDAGIVGMGGAGFPTRVKLS--PKD-ADKIEYIIANCA 163 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRER------ESLQA 138 E EP D M L+ G VI S F RG F E + LQ Sbjct: 164 ECEPYITADYRRMLEYTEDLVSGMRVILSL-------FPNARGIFAVEDNKKDCIQKLQD 216 Query: 139 AVDE 142 AV E Sbjct: 217 AVSE 220 >gi|331085097|ref|ZP_08334183.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407880|gb|EGG87370.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 438 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 + W V + + ++ I+N + +G+ G GGAGF T +K S PK ++ Y++ Sbjct: 103 EQYEEAKWREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS--PKE-PEKIEYII 159 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEG 108 N E EP D M P L+ G Sbjct: 160 ANCAECEPYITADYRRMLETPEKLVGG 186 >gi|332534028|ref|ZP_08409877.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis ANT/505] gi|332036465|gb|EGI72933.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis ANT/505] Length = 606 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D +IN + +G+ G GGAGF T +K + +L+VNA E EP D Sbjct: 130 ELSHDELINIIHQAGISGMGGAGFPTYVKADTKQPI-----EFLIVNAVECEPYITADDV 184 Query: 97 IMRHEPHTLIEGCVI 111 +MR +I+G I Sbjct: 185 LMREHAKEVIQGIEI 199 >gi|325661148|ref|ZP_08149775.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472655|gb|EGC75866.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium 4_1_37FAA] Length = 438 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 + W V + + ++ I+N + +G+ G GGAGF T +K S PK ++ Y++ Sbjct: 103 EQYEEAKWREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS--PKE-PEKIEYII 159 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEG 108 N E EP D M P L+ G Sbjct: 160 ANCAECEPYITADYRRMLETPEKLVGG 186 >gi|257456519|ref|ZP_05621715.1| electron transport complex, RnfABCDGE type, C subunit [Treponema vincentii ATCC 35580] gi|257446179|gb|EEV21226.1| electron transport complex, RnfABCDGE type, C subunit [Treponema vincentii ATCC 35580] Length = 424 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ + ++ +G+ G GGA F +K S PK + Y++ NA E EP C D M Sbjct: 86 KEDALKRIREAGITGMGGASFPVHVKLS-PPK--DAKIDYILGNAAECEPYLCTDAATMY 142 Query: 100 HEPHTLIEGCVIASFAIGA 118 H T+I+G I GA Sbjct: 143 HSAETIIDGMAIIMHVTGA 161 >gi|121996875|ref|YP_001001662.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588280|gb|ABM60860.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 448 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G+GGA F T +K++ D LVVN E EP D +M Sbjct: 129 EELVEAIRDAGIVGQGGASFPTHLKFAVPEGYTVD---TLVVNGCECEPFLSADHRLMVE 185 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYV 125 ++I+G +A A+GA A I V Sbjct: 186 ATDSIIDGVRLAMRAVGAPEAVIGV 210 >gi|325478991|gb|EGC82092.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 441 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 42/250 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ ++K +G+ G GGA F +K+ V +++N E EP D +M++ Sbjct: 123 EEIVAKIKEAGIVGMGGAAFPAHIKYQPTKPV-----DTVIINGAECEPYITCDDYLMKN 177 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 P +++ V A A+ A + + + +S+ AA+++ + NS L D Sbjct: 178 RPERILKALVQAMKAVDAKKGIVAIEDNKPKAYDSMIAALEK-----IAKENSNL----D 228 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVP 218 I + Y G+E +++ R P P +VG V+NV ++ + Sbjct: 229 IEIKKLVTKYPQGDEKRIIDVCLN-----RQVPSGGLPMDVG-----AIVSNVSTMNAIY 278 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 L Y ++ +++G V P + F+ HC GG Sbjct: 279 EALYMDKPLYE----------RIVTVTGKAVKSPTNMIVRCGTEFN-----HCIEQAGGA 323 Query: 278 DNLLAVIPGG 287 D++ ++ GG Sbjct: 324 DDIAKLVNGG 333 >gi|332653503|ref|ZP_08419248.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcaceae bacterium D16] gi|332518649|gb|EGJ48252.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcaceae bacterium D16] Length = 445 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 86/230 (37%), Gaps = 39/230 (16%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 + V+ASGL G GGAGF T +K + PK D L++N E EP D + H Sbjct: 134 DAVRASGLVGLGGAGFPTAVKLA--PKNL-DEIDTLLINGAECEPYITSDNRCFIEDTHF 190 Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164 ++ G + I + ++AA+D I V Sbjct: 191 ILSGIKAVMKYLNIPKCIIGIEANKPEAIAKMKAAIDV----------------AGIEVK 234 Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 Y G E L+E+ G++ P P++VG+ V NV S A V L G Sbjct: 235 ELPCRYPQGAEKVLIENCTGREVP---FPGLPSDVGVI-----VMNVTSTAFVGKYLETG 286 Query: 225 ASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273 TK ++ G V P VE + EL + CGG+ Sbjct: 287 MPLT----------TKRLTVDGDIVKEPKNVEVIIGTPIQELFD-FCGGL 325 >gi|308049948|ref|YP_003913514.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas balearica DSM 9799] gi|307632138|gb|ADN76440.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas balearica DSM 9799] Length = 895 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIM 98 RD I+ ++ +G+ G GGA F +K S +D+P +L++N E EP D +M Sbjct: 133 RDAILGRIRDAGIAGLGGATFPAAIKLS------TDKPVQFLIINGAECEPYITSDDRLM 186 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYV 125 + E ++ G I I I + Sbjct: 187 QDEAEAILSGIDILDHLIQPERILIAI 213 >gi|291514609|emb|CBK63819.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes shahii WAL 8301] Length = 443 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 24/193 (12%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D + K+ II ++K +G+ G GGA F T +K S P + +++N E EP Sbjct: 107 DALVKVCPFSAQEIIAKIKDAGIVGMGGATFPTHVKLSVPP---GKKAECVIINGVECEP 163 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D M L+ G I A+G A+I + L A+G Sbjct: 164 YLTSDHRTMLEHGEELVVGVTILMKAVGVGKAYIGIENNKPDAIAHLTK-----IAAGYK 218 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 G I V Y G E L+ ++ G++ P P P +VG C N Sbjct: 219 G----------IEVVPLKVMYPQGGEKQLIAAVTGRQVPP--PPALPIDVGAVVC----N 262 Query: 210 NVESIAVVPTILR 222 ++AV +L+ Sbjct: 263 ASTTVAVYQAVLK 275 >gi|51947513|gb|AAU14241.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus ovalis] Length = 46 Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLR 53 IF+NLY Q ++ ++ RG W IL +D++I+E+K SGLR Sbjct: 1 IFSNLYKDQDPFINGALKRGDWYRTKDILSCPQDFVIDEIKKSGLR 46 >gi|315186451|gb|EFU20211.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta thermophila DSM 6578] Length = 444 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II +K +G+ G GGAGF T +K S P D L++N E EP D +M + Sbjct: 127 IIERIKEAGIVGMGGAGFPTHVKLSIPPGKEID---TLIINGVECEPYLTADHRLMLEKT 183 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G + A+G FI Sbjct: 184 DEILVGISLIRKALGGPRVFI 204 >gi|304382697|ref|ZP_07365189.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella marshii DSM 16973] gi|304336148|gb|EFM02392.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella marshii DSM 16973] Length = 452 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 37/243 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + II ++K +G+ G GGAGF T +K + P + + +++NA E EP D +M Sbjct: 128 ESIIEKIKTAGITGMGGAGFPTFIKLTPPP---TAKAECIIINAVECEPYITSDYRLMME 184 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 ++ G + A +I +++ + K D Sbjct: 185 HADEILVGLELLMKAAKVTKGYI---------------GIEDNKPKAITLFEEKTAGRTD 229 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + A Y G E L++++ + Q P P NVG V NV + V Sbjct: 230 IEIVPLAKKYPQGGEKQLVDAVIHR--QVPAPPAIPVNVG-----AVVQNVGTAFAV--- 279 Query: 221 LRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 Y + + +++G + +P M +LIE CGG+ G + Sbjct: 280 -------YQAVMKNKPLFERYTTVTGKKLAHPGNFLVRMGTPMKDLIEA-CGGMPKGDNK 331 Query: 280 LLA 282 LLA Sbjct: 332 LLA 334 >gi|225175193|ref|ZP_03729189.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter alkaliphilus AHT 1] gi|225169369|gb|EEG78167.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter alkaliphilus AHT 1] Length = 440 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 102/267 (38%), Gaps = 47/267 (17%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 D W N+ G D + ++ +G+ G GGA F T +K S P + Y++ Sbjct: 110 DVKPNDDWKNL------GVDDLKKIIREAGIVGMGGATFPTHVKVSPPP---DQKIDYVL 160 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 +NA E EP D M P ++ G + A +I + E+++ A + Sbjct: 161 INAAECEPYLTSDHRAMLERPEDVVIGLQTVMKVVNAPKGYIGIEDNKPDAVEAMKKAAE 220 Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 G D +I VH Y G E L+ G++ P + Sbjct: 221 --------------GID-NIEVHALHTKYPQGAEKQLISVFTGREV------PSGGLPSM 259 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSI 260 GC V NV + + +R G E N +I+G +N P + + Sbjct: 260 VGC--VVQNVGTCIAISEAIRLGKPLI-----ERN-----VTITGSGINEPKNMLVRVGT 307 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGG 287 +E+IE+ CGG + N+ +I GG Sbjct: 308 PMEEVIEQ-CGGFK---PNIRKMILGG 330 >gi|326202709|ref|ZP_08192577.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding [Clostridium papyrosolvens DSM 2782] gi|325987293|gb|EGD48121.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding [Clostridium papyrosolvens DSM 2782] Length = 414 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 43/80 (53%) Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G + + D+S +I + + + +SCG+CT CREG + + + KG + Sbjct: 222 MGDGVITIYDKSCCMIAQAEKALLESRKKSCGKCTFCREGLNQLFVRINEITKGKGESNG 281 Query: 375 IDLLYEVSKNIEGRTICALG 394 + ++ ++ + ++ TIC++G Sbjct: 282 LRIMEDIGEAMKFSTICSIG 301 >gi|253997322|ref|YP_003049386.1| RnfABCDGE type electron transport complex subunit C [Methylotenera mobilis JLW8] gi|253984001|gb|ACT48859.1| electron transport complex, RnfABCDGE type, C subunit [Methylotenera mobilis JLW8] Length = 637 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 GK L ++ W + + +I ++ SG+ G GGA F T +K K + Sbjct: 125 GKDLWKPLTPIDWKHT------AHNELITSLRTSGIVGLGGATFPTHIKLR---KDGASA 175 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 H L++NA E EP D +MR +I+G IA + A I Sbjct: 176 IHTLIINAAECEPYITCDDMLMRERADEIIQGIAIAQHLLRATAVVI 222 >gi|166031924|ref|ZP_02234753.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC 27755] gi|166028377|gb|EDR47134.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC 27755] Length = 439 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + + E ++ I+N + +G+ G GGAGF T +K S PK D+ Y++ N E Sbjct: 109 EYSTPKAVSEMSKEEILNAIGDAGIVGMGGAGFPTKVKLS--PKE-PDKIDYIIANCAEC 165 Query: 88 EPGTCKD-RDIMRHEPHTLIEGCVI 111 EP D R I+ H L+EG I Sbjct: 166 EPYITADYRQILEHG-EELVEGMKI 189 >gi|255524147|ref|ZP_05391107.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|296186604|ref|ZP_06855006.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|255512132|gb|EET88412.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|296048641|gb|EFG88073.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] Length = 441 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R W+ +DK ++N +K +G+ G GGA F T +K S P D ++N Sbjct: 112 VERNDWEKLDK------KELLNIIKEAGIVGMGGATFPTHVKLSPPPDKKVDT---FILN 162 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 A E EP D +M + ++ G I +G ++ Sbjct: 163 AAECEPYLTADHRMMLEQSERIVNGVKITMKVLGIDKGYV 202 >gi|332525143|ref|ZP_08401320.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax benzoatilyticus JA2] gi|332108429|gb|EGJ09653.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax benzoatilyticus JA2] Length = 462 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 3/95 (3%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 W I D I+ V +GL G GGA F T K P+ + H LV+N E E Sbjct: 116 WGVARDIDAMTPDEILQAVWDAGLVGLGGAAFPTHAKLKVPPQA---KVHTLVINGCECE 172 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 P D M E L+ G ++ A GA A + Sbjct: 173 PYLTCDHRTMVEESAALVRGIALSMRATGAVRAIV 207 >gi|71907126|ref|YP_284713.1| electron transport complex, RnfABCDGE type, C subunit [Dechloromonas aromatica RCB] gi|71846747|gb|AAZ46243.1| Electron transport complex, RnfABCDGE type, C subunit [Dechloromonas aromatica RCB] Length = 503 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I A+G+ G GGA F K++ ++ + L+VN E EP D IMR Sbjct: 129 EEITKRTAAAGVVGLGGATFPAAPKFALGKRL---KVSTLIVNGGECEPYLSSDDRIMRD 185 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 P +++G + AIGA A + Sbjct: 186 YPEMVVDGARLVMHAIGASEALV 208 >gi|15616735|ref|NP_239947.1| membrane protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682046|ref|YP_002468430.1| membrane protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|17368120|sp|P57215|RNFC_BUCAI RecName: Full=Electron transport complex protein rnfC gi|25403549|pir||A84943 membrane protein [imported] - Buchnera sp. (strain APS) gi|10038798|dbj|BAB12833.1| membrane protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621779|gb|ACL29935.1| membrane protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085858|gb|ADP65940.1| membrane protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087011|gb|ADP67091.1| membrane protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087582|gb|ADP67661.1| membrane protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 473 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I + SG+ G GG F + K F +R H L+VNA ESEP D ++ + Sbjct: 95 LIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNAVESEPYITSDNCLIYNHI 150 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ GC I + I ++ + I+ +Q + +K + + II Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHLIK-----------NKSLFKICII 199 Query: 163 VHHGAGAYICGEETALLESLEGK 185 Y G L++SL GK Sbjct: 200 ----KKKYPAGSSKVLVKSLTGK 218 >gi|315281896|ref|ZP_07870421.1| PduS type ferredoxin, putative [Listeria marthii FSL S4-120] gi|313614458|gb|EFR88077.1| PduS type ferredoxin, putative [Listeria marthii FSL S4-120] Length = 369 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 7 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L+AA+ E D + Sbjct: 60 VETIKAIEMVKSQVGAEFAVIATKRYYTAEIAALRAAISE--------------LDASVT 105 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 W +++ K +++G V P ++ + F+ C GG Sbjct: 150 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGG-T 197 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336 NL + L G M G + D + E T+ +IV + + + K ++ Sbjct: 198 NLAEYL-------FLDGGPMMGKLNDQSTISEKVVTKTTSGLIVAEDTGYLHKLHYQTVE 250 Query: 337 SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 251 QIFNETKSACIQCSLCSD 268 >gi|188590725|ref|YP_001921031.1| putative glutamate synthase (NADPH) small subunit [Clostridium botulinum E3 str. Alaska E43] gi|188501006|gb|ACD54142.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 611 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAW 399 + ++CG+C PCR G + +++ ++ A IDL+ + +K + CA+G +AA Sbjct: 48 QAQTCGKCVPCRIGLAQLENLIDDVLNRKATLETIDLIEKTAKVVIDSADCAIGYEAANM 107 Query: 400 PIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++G++ IE ++ CN Sbjct: 108 VLKGIVGFKSDYIEHIVNNRCICNLN 133 >gi|42526350|ref|NP_971448.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema denticola ATCC 35405] gi|41816462|gb|AAS11329.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema denticola ATCC 35405] Length = 480 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ + V+ +G+ G GGA F T +K S P + Y++ N E EP C D + Sbjct: 120 KEEALKRVRDAGITGMGGASFPTHVKLSPPPDA---KIEYVIANGAECEPYLCTDAATIF 176 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + ++++G I +GA I + L+ A+ + A+ + YD+ Sbjct: 177 SDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKANPIAAG----AYDI 232 Query: 160 DI 161 + Sbjct: 233 SV 234 >gi|225026272|ref|ZP_03715464.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353] gi|224956380|gb|EEG37589.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353] Length = 442 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 44/227 (19%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ + SG+ G GGAGF T +K + + Y+++N E EP D+ +M E Sbjct: 5 LIDIIAKSGIVGAGGAGFPTHVKMN-------AKAEYVIINGAECEPLLRVDQQLMAVET 57 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 +++ + A+GA I ++G + +AA++ N LG I Sbjct: 58 KKILDALKLCMEAVGADKGVIALKGHY-------EAAINS--------FNQLLGEYEGIS 102 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E + + G R+ P P G+ V+NVE++ Sbjct: 103 LHLLPNFYPAGDEQITVYEVTG-----RIVPEGGIPLQCGV-----IVSNVETM------ 146 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 + Y+ + + + +G V T++ + +T E ++ Sbjct: 147 ----LNIYNAYFEDKPVTDSYVTFAGEVKNHITLKLPLGMTVKEALD 189 >gi|291561267|emb|CBL40066.1| NADPH-dependent glutamate synthase beta chain and related oxidoreductases [butyrate-producing bacterium SS3/4] Length = 610 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR G G + +++ ++ G A +DL+ + + +I CA+G +AA Sbjct: 50 QTCGKCVPCRIGLGQLNQLIRDVLNGKATMDTLDLMEKTALSIMDSADCAIGYEAANMVY 109 Query: 402 QGLI 405 +GLI Sbjct: 110 KGLI 113 >gi|325473292|gb|EGC76487.1| hypothetical protein HMPREF9353_02282 [Treponema denticola F0402] Length = 438 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ + V+ +G+ G GGA F T +K S P + Y++ N E EP C D + Sbjct: 78 KEEALKRVRDAGITGMGGASFPTHVKLSPPPDA---KIEYVIANGAECEPYLCTDAATIF 134 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + ++++G I +GA I + L+ A+ + A+ + YD+ Sbjct: 135 SDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKANPIAAG----AYDI 190 Query: 160 DI 161 + Sbjct: 191 SV 192 >gi|311086429|gb|ADP66510.1| membrane protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 451 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I + SG+ G GG F + K F +R H L+VNA ESEP D ++ + Sbjct: 95 LIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNAVESEPYITSDNCLIYNHI 150 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ GC I + I ++ + I+ +Q + +K + + II Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHLIK-----------NKSLFKICII 199 Query: 163 VHHGAGAYICGEETALLESLEGK 185 Y G L++SL GK Sbjct: 200 ----KKKYPAGSSKVLVKSLTGK 218 >gi|154497075|ref|ZP_02035771.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC 29799] gi|150273474|gb|EDN00602.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC 29799] Length = 454 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 7/98 (7%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 WD ++ +++ V+ SGL G GGAGF T +K + DR LV+N E E Sbjct: 129 WDGIEVPKVTNMQELLDAVRKSGLVGLGGAGFPTWVKLN----ATVDR---LVINGSECE 181 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 P D MR + EG I +G A + V+ Sbjct: 182 PYCTVDYIAMRDYAADMAEGVRIVKTLLGIEKAIVGVK 219 >gi|312883749|ref|ZP_07743469.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368599|gb|EFP96131.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC BAA-2122] Length = 645 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 39/193 (20%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK-WSFMPKVCSDRPHYLVVNADES 87 W N E+ + II +++ G+ G GGAGF T K S + K L++NA E Sbjct: 125 WPN---FAERSPEEIIEKIRMLGISGMGGAGFPTAKKVQSGLAKT-----EVLIINAAEC 176 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +MR LI+G I + I + +L+ A + Sbjct: 177 EPYITADDMLMRTYADELIKGIEIVEHILKPKLTVIGIEDNKPEAIRALEIAAE------ 230 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204 D DII+ Y G E L++ L L+ P PA++G+ Sbjct: 231 ----------DKDIIIRVIPTKYPSGGEKQLIKILTN------LEVPSNGIPADIGIL-- 272 Query: 205 PTTVNNVESIAVV 217 V NV S+ + Sbjct: 273 ---VQNVGSLYAI 282 >gi|266624041|ref|ZP_06116976.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium hathewayi DSM 13479] gi|288864137|gb|EFC96435.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium hathewayi DSM 13479] Length = 211 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I N VK +G+ G GGAGF T +K + + D ++VN E EP D +M Sbjct: 122 KEEIRNIVKEAGIVGLGGAGFPTHVKLTPKDESAIDT---IIVNGAECEPYLTSDYRMML 178 Query: 100 HEPHTLIEGC-VIASF 114 EP ++++G VI S Sbjct: 179 EEPESIVKGLNVILSL 194 >gi|313633764|gb|EFS00506.1| PduS type ferredoxin, putative [Listeria seeligeri FSL N1-067] Length = 455 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 7 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A + + + E +L+AA+ E D + Sbjct: 60 VETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALRAAIQE--------------LDSSVT 105 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 W +++ K +++G V P ++ + F+ C GG Sbjct: 150 ------WNVFHAIDDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGT- 197 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336 NL S L G M G + + + E T+ +IV + + + K ++ Sbjct: 198 NL-------SEYLFLDGGPMMGKLNNQSTISEKVVTKTTSGLIVTEDTGYLHKLHYQTVE 250 Query: 337 SVFYKHES-CGQCTPCRE 353 +F + +S C QCT C + Sbjct: 251 QIFNETKSACIQCTLCTD 268 >gi|167771614|ref|ZP_02443667.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM 17241] gi|167666254|gb|EDS10384.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM 17241] Length = 437 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 +NV + + +K SGL G GGAGF T +K + PK S+ LVVNA E EP Sbjct: 109 ENVKPPVISNHPEFVQAIKESGLVGLGGAGFPTHIKLN--PKNLSEV-DTLVVNAAECEP 165 Query: 90 GTCKDRDIMRHEPHTLIEG 108 D + P +++G Sbjct: 166 YITSDYRTIIERPQDVLDG 184 >gi|291279992|ref|YP_003496827.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Deferribacter desulfuricans SSM1] gi|290754694|dbj|BAI81071.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Deferribacter desulfuricans SSM1] Length = 651 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 321 IVMDRSTDIIKAIWR-LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 +V D+ +I+ + + + CG+C P R GT + ++++ +K +I+L Y Sbjct: 50 LVFDKDVNILDVLTEYMFEISSYGCCGRCFPGRMGTRILAEQLQKIKNDGFKKEDIELAY 109 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ +I C + + P++ +KNF Sbjct: 110 DIAYSIYVSAKCTVAPTSTVPVRQFLKNF 138 >gi|150007170|ref|YP_001301913.1| electron transport complex protein RnfC [Parabacteroides distasonis ATCC 8503] gi|255015216|ref|ZP_05287342.1| electron transport complex, protein RnfC [Bacteroides sp. 2_1_7] gi|298377595|ref|ZP_06987547.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 3_1_19] gi|149935594|gb|ABR42291.1| electron transport complex, protein RnfC [Parabacteroides distasonis ATCC 8503] gi|298265614|gb|EFI07275.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 3_1_19] Length = 443 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++++ ASG+ G GGA F T +K P ++ +++NA E EP D +M + Sbjct: 126 IVDKIAASGIVGLGGATFPTQVKLMPPP---GNKAEIVIINAVECEPYLTSDHSLMLEKG 182 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G I A+ + A I Sbjct: 183 EQILVGVTILMKAVNVNKAVI 203 >gi|217967478|ref|YP_002352984.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus turgidum DSM 6724] gi|217336577|gb|ACK42370.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus turgidum DSM 6724] Length = 437 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 +W N+ + I + ++ +G+ G GGA F T +K S P+ D +++N E Sbjct: 116 NWQNLSP------EEIKSRIREAGIVGLGGAAFPTHVKISPPPEKKIDT---VILNGAEC 166 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 EP D +M +P +IEG I + +G I + E L+ D Sbjct: 167 EPYLTIDYRLMLEKPELIIEGLHILMYVLGVKRGIIGIEDNKKDAVEVLKKYAD 220 >gi|160935623|ref|ZP_02082998.1| hypothetical protein CLOBOL_00513 [Clostridium bolteae ATCC BAA-613] gi|158441367|gb|EDP19077.1| hypothetical protein CLOBOL_00513 [Clostridium bolteae ATCC BAA-613] Length = 441 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I N VK +G+ G GGAGF T +K + PK + Y++VN E EP D +M Sbjct: 122 KEEIRNIVKEAGIVGLGGAGFPTHVKLT--PKD-ENAIEYILVNGAECEPYLTSDYRMML 178 Query: 100 HEPHTLIEG 108 EP ++ G Sbjct: 179 EEPEKIVGG 187 >gi|297587688|ref|ZP_06946332.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia magna ATCC 53516] gi|297574377|gb|EFH93097.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia magna ATCC 53516] Length = 442 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%) Query: 21 SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 SD ++ G+ + D + ++ I+ +K +G+ G GGAGF T +K P V + Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHIKMKKKPDV---KIEE 159 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +++N E EP D+ M P I G I + +I V ++ Q A Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + G+L + +K + +I + Y G+E L+ ++ GKK Sbjct: 213 I------GILKNAAK--DETNISICAVKTKYPQGDERRLINAITGKK 251 >gi|170288502|ref|YP_001738740.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga sp. RQ2] gi|170176005|gb|ACB09057.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga sp. RQ2] Length = 435 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 21/198 (10%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ +K +G+ G GGA F T +K S P+ D L+VN E EP D +M Sbjct: 119 KEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIVNGAECEPVLTIDHRLML 175 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +++G +I +G A + V + +L+ GY V Sbjct: 176 ERAEDILQGILIMMKVLGVQEAVVGVESNKMDAYHNLKKVFK--------------GYPV 221 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ + Y G E L+ ++ G+ PR P V + T V E++ Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITGRV-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278 Query: 220 ILRRGASWYSGFGRENNR 237 ++ RG + SG +N + Sbjct: 279 LVERGMT-VSGDAVKNPK 295 >gi|225376079|ref|ZP_03753300.1| hypothetical protein ROSEINA2194_01716 [Roseburia inulinivorans DSM 16841] gi|83596379|gb|ABC25536.1| PduS [Roseburia inulinivorans DSM 16841] gi|225212099|gb|EEG94453.1| hypothetical protein ROSEINA2194_01716 [Roseburia inulinivorans DSM 16841] Length = 441 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 65/323 (20%), Positives = 114/323 (35%), Gaps = 63/323 (19%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D + N + +G+ G GGAGF K + ++ +++N E EP R ++ Sbjct: 4 DELKNIARNNGIVGAGGAGFPAYAKMT-------EKADTVILNCVECEPLLKLHRQLLAT 56 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 +I+ + GA A I ++ E++ ++++ + G + Sbjct: 57 HTEEIIQMLDEVRESFGAKEAVIGIKSEYVTTIKAIEEVI---------------GDFPN 101 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKP---PFPANVGLYGCPTTVNNVESIAVV 217 + + AY G+E L+ G+ +KP P NV +Y T N Sbjct: 102 VRICALKAAYPMGDEVVLIYEATGRV----IKPGGLPIDENVVVYNVETMYN-------- 149 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 Y KL SI G +++P TV + T E I Sbjct: 150 ---------LYRAVHLNIPVTNKLVSIVGEIDHPLTVRVPLGTTVKEAIS---------- 190 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 + G +V PA M G +M G + T A+I++ + ++ + + Sbjct: 191 ------LAGKITVED-PAYVMGGPMMGRLGTENTVITKTTNAIIILPKDHHVVVRMEKNL 243 Query: 338 VFYKHESCGQCTPCREGTGWMMR 360 K + C CR T R Sbjct: 244 DIEKRRASSSCCQCRTCTDMCSR 266 >gi|148269816|ref|YP_001244276.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga petrophila RKU-1] gi|147735360|gb|ABQ46700.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga petrophila RKU-1] Length = 435 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 21/198 (10%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ +K +G+ G GGA F T +K S P+ D L++N E EP D +M Sbjct: 119 KEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIINGAECEPVLTIDHRLML 175 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +++G +I +G A + V + +L+ GY V Sbjct: 176 ERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GYPV 221 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ + Y G E L+ ++ G+ PR P V + T V E++ Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITGRV-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278 Query: 220 ILRRGASWYSGFGRENNR 237 ++ RG + SG +N + Sbjct: 279 LVERGMT-VSGDAVKNPK 295 >gi|160878369|ref|YP_001557337.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium phytofermentans ISDg] gi|160427035|gb|ABX40598.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium phytofermentans ISDg] Length = 439 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I + +K +G+ G GGAGF T +K + D YL++N E EP D +M Sbjct: 122 KEQIRSIIKEAGIVGMGGAGFPTHIKLTPKDDSAID---YLIINGSECEPYLTSDYRMML 178 Query: 100 HEPHTLIEGCVIA 112 E + LI+G I Sbjct: 179 EETNRLIKGIKIT 191 >gi|256840545|ref|ZP_05546053.1| electron transport complex [Parabacteroides sp. D13] gi|256737817|gb|EEU51143.1| electron transport complex [Parabacteroides sp. D13] Length = 443 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++++ ASG+ G GGA F T +K P ++ +++NA E EP D +M + Sbjct: 126 IVDKIAASGIVGLGGATFPTQVKLMPPP---GNKAEIVIINAVECEPYLTSDHSLMLEKG 182 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G I A+ + A I Sbjct: 183 EQILVGVTILMKAVNVNKAVI 203 >gi|146306434|ref|YP_001186899.1| electron transport complex protein RnfC [Pseudomonas mendocina ymp] gi|145574635|gb|ABP84167.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas mendocina ymp] Length = 944 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGAGF T +K + P + + H L++N E EP D +MR L+ Sbjct: 134 IREAGISGLGGAGFPTAVKLTARP---TQKIHTLIINGTECEPYITADDLLMRERAGELV 190 Query: 107 EGCVI 111 G I Sbjct: 191 SGIDI 195 >gi|262381166|ref|ZP_06074304.1| electron transport complex protein [Bacteroides sp. 2_1_33B] gi|301311165|ref|ZP_07217093.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 20_3] gi|262296343|gb|EEY84273.1| electron transport complex protein [Bacteroides sp. 2_1_33B] gi|300830739|gb|EFK61381.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 20_3] Length = 443 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++++ ASG+ G GGA F T +K P ++ +++NA E EP D +M + Sbjct: 126 IVDKIAASGIVGLGGATFPTQVKLMPPP---GNKAEIVIINAVECEPYLTSDHSLMLEKG 182 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G I A+ + A I Sbjct: 183 EQILVGVTILMKAVNVNKAVI 203 >gi|325280076|ref|YP_004252618.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter splanchnicus DSM 20712] gi|324311885|gb|ADY32438.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter splanchnicus DSM 20712] Length = 443 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ + A+G+ G GGA F T +K + P ++ L++N E EP D IM Sbjct: 123 KEEIVKAIAAAGIVGMGGATFPTQVKLTPPP---GNKAEVLIINGVECEPYLTADHRIML 179 Query: 100 HEPHTLIEGCVIASFAIGAHCAFI 123 + +I G I AI A I Sbjct: 180 EKAEEIIIGVQILMKAIDVKRAII 203 >gi|153855000|ref|ZP_01996213.1| hypothetical protein DORLON_02219 [Dorea longicatena DSM 13814] gi|149752497|gb|EDM62428.1| hypothetical protein DORLON_02219 [Dorea longicatena DSM 13814] Length = 610 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR G G + + ++ G A + +D++ + + +I CA+G +AA Sbjct: 50 QTCGKCVPCRIGLGQLNNFIREVLDGKATMKTLDIMEQTALSIMESADCAIGYEAANMVY 109 Query: 402 QGLI 405 +GLI Sbjct: 110 KGLI 113 >gi|33151623|ref|NP_872976.1| electron transport complex protein RnfC [Haemophilus ducreyi 35000HP] gi|71153698|sp|Q7VNT4|RNFC_HAEDU RecName: Full=Electron transport complex protein rnfC gi|33147844|gb|AAP95365.1| putative iron-sulfur binding NADH dehydrogenase [Haemophilus ducreyi 35000HP] Length = 702 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 ++ L D II +V G+ G GGA F T K S K C L++N E EP Sbjct: 132 IEDFLTLTSDQIIQKVYQYGIAGLGGAVFPTACKLSLADKRCK----VLIINGAECEPYI 187 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 TC DR +M+ L+EG I + + I + Sbjct: 188 TCDDR-LMQDFTAELLEGIRILRYVLRPEEVVIAI 221 >gi|291549337|emb|CBL25599.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Ruminococcus torques L2-14] Length = 448 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 69/310 (22%), Positives = 118/310 (38%), Gaps = 60/310 (19%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGAGF T K +R +++N E EP R ++ +I Sbjct: 10 LQQNGIVGAGGAGFPTYAKL-------DERAETIILNCAECEPLLRLHRQLLEKYAKEII 62 Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 + + +GA I ++ + E+++A + + Y LG ++ Sbjct: 63 DTFHMIGETVGAKEVIIGIKKAYTATIEAVKAVMGQ-YPEVRLGLLDEV----------- 110 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 Y G+E L+ GK +P P + V ++ NVE++ V Sbjct: 111 ---YPAGDEVVLIYETTGKVVRPG-GLPIESGVAVF-------NVETVYNV--------- 150 Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 Y + KL S+ V +P TV + +E++ + GG AV Sbjct: 151 -YRALNEKTPVEDKLVSVVAEVEHPITVRVPIGTPLEEVV-----ALAGGVTTKDAVYFV 204 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRLSVFYKHES- 344 G G M G I G T A++V+ + II K + + S+ K + Sbjct: 205 G--------GPMMGNI----GTGAQPVTKTTNAILVLPKDHHIIQKKLKKNSIDMKRAAA 252 Query: 345 -CGQCTPCRE 353 C QCT C + Sbjct: 253 CCCQCTMCTD 262 >gi|149190373|ref|ZP_01868645.1| electron transport complex protein RnfC [Vibrio shilonii AK1] gi|148835752|gb|EDL52717.1| electron transport complex protein RnfC [Vibrio shilonii AK1] Length = 934 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 L++ + +I ++ +G+ G GGAGF T K + R L++NA E EP D Sbjct: 129 LDELPESLIERIRLAGISGMGGAGFPTARKI----QSGLQRTEILILNAAECEPYITADD 184 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDE 142 +M+ + +IEG I + + I + + E I+ E QAA DE Sbjct: 185 RLMQDKAQEVIEGIKILNHILKPKLTIIGIEDNKPEAIKALE--QAATDE 232 >gi|182413872|ref|YP_001818938.1| respiratory-chain NADH dehydrogenase domain-containing protein [Opitutus terrae PB90-1] gi|177841086|gb|ACB75338.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Opitutus terrae PB90-1] Length = 441 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 65/279 (23%), Positives = 102/279 (36%), Gaps = 58/279 (20%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 ++ N E EP KD +M L+ G +A A+GA + ++ + + + +A Sbjct: 33 VIANGAECEPLLHKDAAVMERNARDLVTGLQLAMEAVGATTGIVGLKA---KNQHAQEAV 89 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPA 197 + C + I +H Y G+E L+ + G RL PP P Sbjct: 90 TEACRGT-------------TIRIHLLGDYYPAGDEYDLVYTTTG-----RLIPPAGIPL 131 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 NVG V+NVE++ + + GR K +I+G V P T+ Sbjct: 132 NVG-----AVVSNVETLVNIAA---------AAEGRPVTH--KTLTIAGAVAAPATLTVP 175 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + T + C GG L V+ C+ M D D +G Sbjct: 176 LGTTL-----RACLDAAGGPTVLDPVL-------CIGGMMMGETTTDLDRPVTKTTG--- 220 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYK---HESCGQCTPCRE 353 VIV+ RS II+ + + +C QC C E Sbjct: 221 -GVIVLPRSHRIIQRKLKPATLQHAIGKSACDQCRYCTE 258 >gi|304316325|ref|YP_003851470.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777827|gb|ADL68386.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 441 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 38/230 (16%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 V+ +G+ G GGA F T +K + P D +++N E EP D +M +P ++ Sbjct: 131 VRDAGIVGMGGAMFPTAVKLNPPPDKKID---IVILNGAECEPYLTADHRLMLEKPVDIV 187 Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 G + A+GA ++ + + ++ A E YA G +V ++ Sbjct: 188 HGLLAIMKALGASKGYVGIEDNKQDAIKEIRKACKE-YA----------GVEVAVL---- 232 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 Y G E +++++ G++ P K PA++G+ V+NV + + ++ G Sbjct: 233 KTKYPQGSEKHIIKAITGRE-IPSGK--LPADIGV-----VVDNVGTAFAIAEAIKFGKP 284 Query: 227 WYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 ++ +++G + P + + F ELIE CGG +G Sbjct: 285 LIE----------RVVTVTGEGIMTPKNLRVKIGTPFRELIE-CCGGFKG 323 >gi|292492763|ref|YP_003528202.1| electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus halophilus Nc4] gi|291581358|gb|ADE15815.1| electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus halophilus Nc4] Length = 515 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 N ++ +G+ G GGAGF T +K + P+ R L++N E EP D +MR Sbjct: 131 NLIRQAGIVGLGGAGFPTFIKLNPGPE---PRVETLILNGAECEPYITCDDLLMRERAEE 187 Query: 105 LIEGCVIASFAIGAHCAFI 123 +I+G I A+ H I Sbjct: 188 IIQGIRIMGHALHVHHCLI 206 >gi|156975237|ref|YP_001446144.1| electron transport complex protein RnfC [Vibrio harveyi ATCC BAA-1116] gi|156526831|gb|ABU71917.1| hypothetical protein VIBHAR_02966 [Vibrio harveyi ATCC BAA-1116] Length = 912 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QESADALIDVIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M+ LI+G I + I Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTII 212 >gi|187777437|ref|ZP_02993910.1| hypothetical protein CLOSPO_01004 [Clostridium sporogenes ATCC 15579] gi|187774365|gb|EDU38167.1| hypothetical protein CLOSPO_01004 [Clostridium sporogenes ATCC 15579] Length = 431 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 38/242 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I++ ++ +G+ G GGAGF T +K ++ NA E EP + + + + Sbjct: 81 NNILDLIQEAGIVGMGGAGFPTHIKMDV-----DLNGGVVIANAVECEPLLAHNINQIVN 135 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 EP + +G A A+ A ++ + + SL+ + D + Sbjct: 136 EPELIYKGLCYAMEAVNASKGIFAIKSKNVEAISSLKNIIK----------------DSN 179 Query: 161 IIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I + + Y GEE A++ + GK G +L P AN + T E++ + Sbjct: 180 IKIVELSDMYPMGEERAIIREVLGKLLGTSQL--PLEANAVVSNVETLAKIAEAVELKKP 237 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 ++ + + +N +++F +N P + T E+IE GGI G + Sbjct: 238 VISKNITVVGKL--KNGLKSQVF-----MNVP------IGTTVREIIEA-AGGIDGEYGE 283 Query: 280 LL 281 ++ Sbjct: 284 II 285 >gi|223041743|ref|ZP_03611936.1| electron transport complex protein RnfC [Actinobacillus minor 202] gi|223017427|gb|EEF15845.1| electron transport complex protein RnfC [Actinobacillus minor 202] Length = 571 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 ++ L+ I+ +V G+ G GGA F T K F K C L++N E EP Sbjct: 138 IEDFLQLTSGEIVEKVYRYGIAGLGGAVFPTASKLHFADKRCK----VLIINGAECEPYI 193 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ LIEG I + + I + + ++++ A L G Sbjct: 194 TCDDR-LMQEYADELIEGIRILRYVLRPEEVVIAIEDNKPKAIQAVEKA--------LKG 244 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 +N D+ V Y G L++ L G Sbjct: 245 AN-------DMFVRAIPTQYPSGASDQLVQILTG 271 >gi|219854110|ref|YP_002471232.1| hypothetical protein CKR_0767 [Clostridium kluyveri NBRC 12016] gi|219567834|dbj|BAH05818.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 442 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 38/201 (18%) Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + + Y +VN E EP D+ +MR+ ++E AIGA A I ++ + E Sbjct: 28 NTKVEYFIVNGLECEPLLQSDKYLMRNYSDEIVETVQKIGEAIGAAHAVIGLKAAYHTEI 87 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 E+L+ +++ KL V++ + Y G+E L+ + G R P Sbjct: 88 EALKKSIN------------KLNSTVELFLSE--AFYPAGDEQVLVYEVTG-----RTIP 128 Query: 194 P--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 P P++VG V+NV ++ + + Y K ++ G V P Sbjct: 129 PGGIPSSVG-----AVVSNVGTVVNIADAINDKPVTY-----------KYVTVIGEVGNP 172 Query: 252 CTVEESMSITFDELIEKHCGG 272 ++ + E I+K CGG Sbjct: 173 SIIKVPIGTKVMECIDK-CGG 192 >gi|152979363|ref|YP_001344992.1| putative glutamate synthase (NADPH) small subunit [Actinobacillus succinogenes 130Z] gi|150841086|gb|ABR75057.1| FAD dependent oxidoreductase [Actinobacillus succinogenes 130Z] Length = 612 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 40/74 (54%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR+G + ++ +++ G + + + E+++ I + CA+G A+ I Sbjct: 50 QTCGKCVPCRDGIPQLSILVRKVLDGEGDESTMKQIRELAEMIRDGSDCAIGYQPAFEIL 109 Query: 403 GLIKNFRPLIEERI 416 I+ F+ E I Sbjct: 110 DSIEEFKEEYESHI 123 >gi|229518065|ref|ZP_04407509.1| electron transport complex protein RnfC [Vibrio cholerae RC9] gi|229344780|gb|EEO09754.1| electron transport complex protein RnfC [Vibrio cholerae RC9] Length = 725 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239 >gi|121729986|ref|ZP_01682403.1| RnfC-related protein [Vibrio cholerae V52] gi|147674223|ref|YP_001216487.1| electron transport complex protein RnfC [Vibrio cholerae O395] gi|262167228|ref|ZP_06034940.1| electron transport complex protein RnfC [Vibrio cholerae RC27] gi|121628272|gb|EAX60785.1| RnfC-related protein [Vibrio cholerae V52] gi|146316106|gb|ABQ20645.1| RnfC-related protein [Vibrio cholerae O395] gi|262024372|gb|EEY43061.1| electron transport complex protein RnfC [Vibrio cholerae RC27] Length = 773 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212 >gi|254848145|ref|ZP_05237495.1| electron transport complex protein RnfC [Vibrio cholerae MO10] gi|298498872|ref|ZP_07008679.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757] gi|254843850|gb|EET22264.1| electron transport complex protein RnfC [Vibrio cholerae MO10] gi|297543205|gb|EFH79255.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757] Length = 776 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 136 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 191 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 192 YAHEIIQGIEIVEHILKPKLTII 214 >gi|255526883|ref|ZP_05393780.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] gi|296186944|ref|ZP_06855344.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium carboxidivorans P7] gi|255509446|gb|EET85789.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] gi|296048382|gb|EFG87816.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium carboxidivorans P7] Length = 449 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 41/212 (19%) Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y ++N E EP D+ IMR++ +++ + A I ++ E+ +E E+L+ Sbjct: 31 EYFIINGLECEPLLQSDKYIMRNKSDEIVKAAEEIGKLVEASNIVIGLKKEYEKEIEALK 90 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--F 195 ++D+ L SN L Y D+ Y G+E L+ + G R PP Sbjct: 91 KSIDK------LNSNITL-YLSDVF-------YPAGDEQILVYEVTG-----RTIPPAGI 131 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P NVG V+NV ++ + + Y K ++ G V P ++ Sbjct: 132 PLNVG-----AVVSNVSTVFNIYEAMEDKPVMY-----------KYVTVIGEVGTPSIIK 175 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 + E IE CGG + D+ AVI GG Sbjct: 176 VPIGTPVLECIE-SCGGAK--LDD-YAVIMGG 203 >gi|153953484|ref|YP_001394249.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|153953488|ref|YP_001394253.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|219854106|ref|YP_002471228.1| hypothetical protein CKR_0763 [Clostridium kluyveri NBRC 12016] gi|146346365|gb|EDK32901.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|146346369|gb|EDK32905.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|219567830|dbj|BAH05814.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 441 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 38/201 (18%) Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + + Y +VN E EP D+ +MR+ ++E AIGA A I ++ + E Sbjct: 27 NTKVEYFIVNGLECEPLLQSDKYLMRNYSDEIVETVQKIGEAIGAAHAVIGLKAAYHTEI 86 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 E+L+ +++ KL V++ + Y G+E L+ + G R P Sbjct: 87 EALKKSIN------------KLNSTVELFLSE--AFYPAGDEQVLVYEVTG-----RTIP 127 Query: 194 P--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 P P++VG V+NV ++ + + Y K ++ G V P Sbjct: 128 PGGIPSSVG-----AVVSNVGTVVNIADAINDKPVTY-----------KYVTVIGEVGNP 171 Query: 252 CTVEESMSITFDELIEKHCGG 272 ++ + E I+K CGG Sbjct: 172 SIIKVPIGTKVMECIDK-CGG 191 >gi|87118385|ref|ZP_01074284.1| electron transport complex protein RnfC [Marinomonas sp. MED121] gi|86166019|gb|EAQ67285.1| electron transport complex protein RnfC [Marinomonas sp. MED121] Length = 1251 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 26/163 (15%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ + G+ G GGAGF T +K + K H L++NA E EP D ++R + Sbjct: 130 VVSHLAEMGIVGMGGAGFPTQVKLAGATKHTI---HELIINAAECEPYITADDMLIREKT 186 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 LI+G + I A I + ++ +++ DE + ++D++ Sbjct: 187 DALIKGIQVLQTLIEAQRTIIGIED---NKQTAIKLLTDEI---------ERTKANIDVV 234 Query: 163 VHHGAGAYICGEETALLESLEGKK---GQPRLKPPFPANVGLY 202 V Y G E L++ + GK+ GQ PA++G+ Sbjct: 235 VL--PTKYPSGGEKQLIQLITGKEVPSGQ------LPADIGVM 269 >gi|121587381|ref|ZP_01677151.1| RnfC-related protein [Vibrio cholerae 2740-80] gi|153819295|ref|ZP_01971962.1| RnfC-related protein [Vibrio cholerae NCTC 8457] gi|153823435|ref|ZP_01976102.1| RnfC-related protein [Vibrio cholerae B33] gi|255745440|ref|ZP_05419388.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101] gi|262151308|ref|ZP_06028443.1| electron transport complex protein RnfC [Vibrio cholerae INDRE 91/1] gi|17369132|sp|Q9KT88|RNFC_VIBCH RecName: Full=Electron transport complex protein rnfC gi|121548384|gb|EAX58446.1| RnfC-related protein [Vibrio cholerae 2740-80] gi|126510155|gb|EAZ72749.1| RnfC-related protein [Vibrio cholerae NCTC 8457] gi|126519044|gb|EAZ76267.1| RnfC-related protein [Vibrio cholerae B33] gi|255736515|gb|EET91912.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101] gi|262030924|gb|EEY49553.1| electron transport complex protein RnfC [Vibrio cholerae INDRE 91/1] Length = 774 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212 >gi|327483731|gb|AEA78138.1| Electron transport complex protein RnfC [Vibrio cholerae LMA3894-4] Length = 770 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212 >gi|331092596|ref|ZP_08341415.1| hypothetical protein HMPREF9477_02058 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400607|gb|EGG80221.1| hypothetical protein HMPREF9477_02058 [Lachnospiraceae bacterium 2_1_46FAA] Length = 610 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 39/74 (52%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G + ++ ++ G A +DL+ + + +I + CA+G AA + Sbjct: 50 QTCGKCVPCRVGLWQLKNLLTDVLNGNATLDTLDLMEDSALSIMQSSDCAIGYEAAHMVY 109 Query: 403 GLIKNFRPLIEERI 416 + +R EE I Sbjct: 110 KALVGYREDFEEHI 123 >gi|298528245|ref|ZP_07015649.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511897|gb|EFI35799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 203 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ--KREIDLLYEV 381 +R+ + + + + F CG+C PC GTG + RL A+ R++DLL + Sbjct: 23 ERACPVQQMQYFIDEFLDKPMCGKCYPCALGTGEAQIRVARLASRGAEVDSRDLDLLRRI 82 Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 N+ ++C G I L++N R I E +D+ Sbjct: 83 GDNMVRGSLCKRGKDTGEFILELLENSRDEIMEHVDR 119 >gi|328947363|ref|YP_004364700.1| electron transport complex, RnfABCDGE type, C subunit [Treponema succinifaciens DSM 2489] gi|328447687|gb|AEB13403.1| electron transport complex, RnfABCDGE type, C subunit [Treponema succinifaciens DSM 2489] Length = 449 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 G++ ++ +K +G+ G GGA F +K + P+ Y++VNA E EP D M Sbjct: 119 GKEKVLERIKDAGIVGMGGASFPAHVKLN-PPE--DKEIDYVLVNAAECEPYLTCDERTM 175 Query: 99 RHEPHTLIEGCVIASFAIGA 118 P LI+G I +GA Sbjct: 176 IETPEKLIDGLAIILNLVGA 195 >gi|269962090|ref|ZP_06176444.1| RnfC-related protein [Vibrio harveyi 1DA3] gi|269833174|gb|EEZ87279.1| RnfC-related protein [Vibrio harveyi 1DA3] Length = 910 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QESADALIDVIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M+ LI+G I + I Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTII 212 >gi|257066815|ref|YP_003153071.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii DSM 20548] gi|256798695|gb|ACV29350.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii DSM 20548] Length = 439 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 DNVD E+ I+ ++K +G+ G GGA F +K+ +P D ++VN E EP Sbjct: 114 DNVDLNAEE----IVAKIKEAGIVGMGGAAFPAHIKY--LPAKPVDT---VIVNGAECEP 164 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 D +M++ P +++ A A+GA I + + +++ +A+++ Sbjct: 165 YITCDDYLMKNRPERILKALNQAMKAVGAKKGIIAIEDNKPKAFDTMVSALEK 217 >gi|219871790|ref|YP_002476165.1| electron transport complex protein RnfC [Haemophilus parasuis SH0165] gi|219691994|gb|ACL33217.1| electron transport complex protein RnfC/NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus parasuis SH0165] Length = 666 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L II +V +G+ G GGA F T K K C L++N E EP Sbjct: 126 IDDFLSLTSGQIIQKVYQAGIAGLGGAVFPTSHKLHVADKRCK----LLIINGAECEPYI 181 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 TC DR +M+ +IEG I + + I + + ++++ A L G Sbjct: 182 TCDDR-LMQDYADEMIEGVRILRYVLRPEEVVIAIEDNKPKAIQAVEKA--------LKG 232 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 +N DI V Y G L++ L G Sbjct: 233 AN-------DISVRVIPTKYPSGASDQLVQVLTG 259 >gi|226940366|ref|YP_002795440.1| Electron transport complex protein rnfC [Laribacter hongkongensis HLHK9] gi|226715293|gb|ACO74431.1| Electron transport complex protein rnfC [Laribacter hongkongensis HLHK9] Length = 440 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Query: 41 DW----IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 DW + + V+A+GL G GGA F T +K S + D LVVN E EP D Sbjct: 121 DWSPVELASAVQATGLVGLGGAAFPTHVKMSPPKEAVLD---TLVVNGCECEPFLTADHR 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 +M L+ G A A+G A I V Sbjct: 178 VMIERTAGLMAGIRYAMHAVGVSRALIGV 206 >gi|163802832|ref|ZP_02196721.1| electron transport complex protein RnfC [Vibrio sp. AND4] gi|159173372|gb|EDP58195.1| electron transport complex protein RnfC [Vibrio sp. AND4] Length = 911 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G+ V ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E Sbjct: 120 GNKTPVADYTQETADTLIDVIRLAGVSGMGGAGFPTAKKI----QSGLARTEILIVNAAE 175 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 EP D +M+ LI+G I + I Sbjct: 176 CEPYITADDKLMQEHADELIQGIEIVEHILKPKLTII 212 >gi|219854108|ref|YP_002471230.1| hypothetical protein CKR_0765 [Clostridium kluyveri NBRC 12016] gi|219854112|ref|YP_002471234.1| hypothetical protein CKR_0769 [Clostridium kluyveri NBRC 12016] gi|219567832|dbj|BAH05816.1| hypothetical protein [Clostridium kluyveri NBRC 12016] gi|219567836|dbj|BAH05820.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 443 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 34/194 (17%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y +VNA E EP D+ +MR+ ++ I ++GA I ++ + E ++L Sbjct: 33 YFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAEKIVIGLKNVYYNEIDALTN 92 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++ KL V++ ++ Y G+E L+ + GK P P+ Sbjct: 93 SI------------KKLNSSVELFLNR--SFYPAGDEQILVYEVTGKTIAPG---AIPST 135 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VG V+NV ++ V L+ Y K ++ G V P V+ + Sbjct: 136 VG-----AVVSNVGTVFNVFEALKDEPVTY-----------KYVTVVGEVASPAIVKVPI 179 Query: 259 SITFDELIEKHCGG 272 E IEK CGG Sbjct: 180 GTKVTECIEK-CGG 192 >gi|311279508|ref|YP_003941739.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae SCF1] gi|308748703|gb|ADO48455.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae SCF1] Length = 679 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 K RD +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 KTRDTLIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIDTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQIVEGVRI 199 >gi|333031168|ref|ZP_08459229.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides coprosuis DSM 18011] gi|332741765|gb|EGJ72247.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides coprosuis DSM 18011] Length = 445 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 + + G +S+ R D + K E + I+ + G+ G GGA F T +K + P Sbjct: 97 IIDVDGDEWEESIDRS--DALIKDCELSSEDIVKRIADCGVVGLGGACFPTQVKLTPPP- 153 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 S + +++NA E EP D +M + +I G I A+ + AFI Sbjct: 154 --SFKAECVIINAVECEPYLTADHQLMLEKAEEIIVGVTIIMKAVKVNKAFI 203 >gi|240948590|ref|ZP_04752963.1| electron transport complex protein RnfC [Actinobacillus minor NM305] gi|240297098|gb|EER47669.1| electron transport complex protein RnfC [Actinobacillus minor NM305] Length = 793 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 21/143 (14%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101 I+ +V G+ G GGA F T K F K C L++N E EP TC DR +M+ Sbjct: 143 IVEKVYRYGIAGLGGAVFPTASKLHFADKRCK----VLIINGAECEPYITCDDR-LMQEY 197 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 LIEG I + + I + + ++++ A L G+N D+ Sbjct: 198 ADELIEGIRILRYVLRPEEVVIAIEDNKPKAIQAVEKA--------LKGAN-------DM 242 Query: 162 IVHHGAGAYICGEETALLESLEG 184 V Y G L++ L G Sbjct: 243 FVRAIPTQYPSGASDQLVQILTG 265 >gi|222099416|ref|YP_002533984.1| Electron transport complex protein [Thermotoga neapolitana DSM 4359] gi|221571806|gb|ACM22618.1| Electron transport complex protein [Thermotoga neapolitana DSM 4359] Length = 435 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 20/187 (10%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I++ +K +G+ G GGA F T +K S P+ D L++N E EP D +M Sbjct: 119 KEEILDVIKKAGVVGLGGAMFPTHVKLSPPPEKKIDT---LIINGAECEPVLTIDHRMML 175 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +++G +I +G A + V + L+ GY V Sbjct: 176 ERAEDILQGILIMMKVLGVQKAVVGVENNKMDAYNHLKKVFK--------------GYPV 221 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ + Y G E L+ ++ +K PR P V + T V E++ Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITRRK-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278 Query: 220 ILRRGAS 226 ++ RG + Sbjct: 279 LVERGMT 285 >gi|262191542|ref|ZP_06049725.1| electron transport complex protein RnfC [Vibrio cholerae CT 5369-93] gi|262032596|gb|EEY51151.1| electron transport complex protein RnfC [Vibrio cholerae CT 5369-93] Length = 814 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212 >gi|28898878|ref|NP_798483.1| electron transport complex protein RnfC [Vibrio parahaemolyticus RIMD 2210633] gi|260897154|ref|ZP_05905650.1| electron transport complex protein RnfC [Vibrio parahaemolyticus Peru-466] gi|260902709|ref|ZP_05911104.1| electron transport complex, rnfABCDGE type, c subunit family protein [Vibrio parahaemolyticus AQ4037] gi|28807097|dbj|BAC60367.1| RnfC-related protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087160|gb|EFO36855.1| electron transport complex protein RnfC [Vibrio parahaemolyticus Peru-466] gi|308109009|gb|EFO46549.1| electron transport complex, rnfABCDGE type, c subunit family protein [Vibrio parahaemolyticus AQ4037] Length = 869 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QESADALIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M+ LI+G I + I Sbjct: 186 LMQEHAEELIQGIEIVEHILKPKLTII 212 >gi|153953486|ref|YP_001394251.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|153953490|ref|YP_001394255.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|146346367|gb|EDK32903.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|146346371|gb|EDK32907.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] Length = 442 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 34/194 (17%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y +VNA E EP D+ +MR+ ++ I ++GA I ++ + E ++L Sbjct: 32 YFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAEKIVIGLKNVYYNEIDALTN 91 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++ KL V++ ++ Y G+E L+ + GK P P+ Sbjct: 92 SI------------KKLNSSVELFLNR--SFYPAGDEQILVYEVTGKTIAPG---AIPST 134 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VG V+NV ++ V L+ Y K ++ G V P V+ + Sbjct: 135 VG-----AVVSNVGTVFNVFEALKDEPVTY-----------KYVTVVGEVASPAIVKVPI 178 Query: 259 SITFDELIEKHCGG 272 E IEK CGG Sbjct: 179 GTKVTECIEK-CGG 191 >gi|320156874|ref|YP_004189253.1| electron transport complex protein RnfC [Vibrio vulnificus MO6-24/O] gi|319932186|gb|ADV87050.1| electron transport complex protein RnfC [Vibrio vulnificus MO6-24/O] Length = 690 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D++++ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKKI----QSGLGRTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +++ +++G I + I + ++L++A Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKK 186 + DI++ Y G E L++ L K+ Sbjct: 230 QNRDIVIRVIPTKYPSGGEKQLIKVLTNKE 259 >gi|290967901|ref|ZP_06559451.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782040|gb|EFD94618.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera genomosp. type_1 str. 28L] Length = 446 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 51/254 (20%) Query: 40 RDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPG- 90 RDW I++ VKA G+ G GGA F +K + ++P +VN E EP Sbjct: 115 RDWEKMSKEEILDAVKACGIVGCGGATFPVHVKLT------PNKPVDSFIVNGAECEPYL 168 Query: 91 TCKDRDIMRHEP-HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 TC R ++ EP + G I +G +I + +L A + ++ Sbjct: 169 TCDFRSMVEAEPTRKFVTGVQICMKVLGVKKGYIGIEDNKPEAIANLTEAFRQVPEVTVV 228 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 +K Y G E ++E+ G+ +P P NVG V+ Sbjct: 229 TCKTK---------------YPQGAEKMMIEACTGRLVEPG---GLPMNVG-----CVVS 265 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV ++ + + G ++ +++G + P + + T++E I+ Sbjct: 266 NVGTVIAITDAVCYGIPLIE----------RVTTVTGDCIAEPKNLRLRIGTTYEEAIQ- 314 Query: 269 HCGGIRGGWDNLLA 282 HCGG D ++A Sbjct: 315 HCGGFSQQPDRVIA 328 >gi|227012832|gb|ACP09042.1| RnfC-related protein [Vibrio cholerae O395] Length = 800 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239 >gi|16800175|ref|NP_470443.1| hypothetical protein lin1106 [Listeria innocua Clip11262] gi|16413565|emb|CAC96337.1| lin1106 [Listeria innocua Clip11262] Length = 454 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 67/320 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E AS + Sbjct: 59 VETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITELNAS--------------VT 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 148 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276 W +++ K +++G V P ++ + F+ C GG Sbjct: 149 ------WNVFHAIQDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 197 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D L L G M G + D + E T+ +IV + + + K ++ Sbjct: 198 LDEYLF----------LDGGPMMGKLNDQSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 247 Query: 337 --SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 248 VEQIFNETKSACIQCSLCSD 267 >gi|332297502|ref|YP_004439424.1| Electron transport complex protein rnfC [Treponema brennaborense DSM 12168] gi|332180605|gb|AEE16293.1| Electron transport complex protein rnfC [Treponema brennaborense DSM 12168] Length = 467 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 3/97 (3%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 D R + V ++ + ++ +G+ G GGA F T +K + + Y++ Sbjct: 123 DDSDRTEFLPVLDPFACSKEEALTRIREAGIVGMGGAAFPTHVKLN---PPAGKKIEYVL 179 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 NA E EP D M P LI+G IA GA Sbjct: 180 ANAAECEPYLTIDERTMIETPQKLIDGLAIAMNVTGA 216 >gi|229515401|ref|ZP_04404860.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21] gi|229347170|gb|EEO12130.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21] Length = 800 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239 >gi|291613328|ref|YP_003523485.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] gi|291583440|gb|ADE11098.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] Length = 492 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 40/240 (16%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 ++VD + I V +G+ G GGA F +K + S L++N E EP Sbjct: 113 ESVDDPFALSPENIAARVAVAGIVGLGGATFPAALKLNLS---RSSGVQTLIMNGGECEP 169 Query: 90 G-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 TC DR IMR ++EG + + A+ A +E L D + Sbjct: 170 YLTCDDR-IMRERAGQIVEGIRLIAIAVAA--------------KEVLVGIEDNKPEAIA 214 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 + G V ++ Y G E +++ L GK+ + PA++G+ V Sbjct: 215 AMQAAAEGSAVKVVTM--PSMYPMGSEKQIIQVLTGKEIPAGGR---PADIGVL-----V 264 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIE 267 +NV + V +R G S ++ ++S G + C VE + ELI+ Sbjct: 265 HNVATAFAVQQAIRYGRPLIS----------RIVTVSGGAIKTACNVEALVGTPVQELID 314 >gi|300936047|ref|ZP_07150994.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 21-1] gi|300458773|gb|EFK22266.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 21-1] Length = 578 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|167038505|ref|YP_001666083.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751374|ref|ZP_05492253.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter ethanolicus CCSD1] gi|320116900|ref|YP_004187059.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857339|gb|ABY95747.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749756|gb|EEU62781.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter ethanolicus CCSD1] gi|319929991|gb|ADV80676.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 443 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 42/233 (18%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II +K +G+ G GGAGF T +K S + ++VN E EP D +M P Sbjct: 127 IIEIIKEAGITGMGGAGFPTHVKLS---PPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ G A+G I V++ +L + +I Sbjct: 184 EKIVFGLKAIMKAVGVERGII---------------GVEKNKPDAILALREASKDEKNIQ 228 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 + Y G+E L+ ++ G R+ P P +VG+ VN + AV I Sbjct: 229 IATLKVKYPQGDEKRLINAILG-----RIVPSGGLPMDVGVI----VVNAATTKAVADAI 279 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 L G Y ++ +I+GH + P + + +LIE CGG Sbjct: 280 L-EGKPLYE----------RVTTITGHGIKQPKNLLVKIGTPLKDLIE-QCGG 320 >gi|167759827|ref|ZP_02431954.1| hypothetical protein CLOSCI_02190 [Clostridium scindens ATCC 35704] gi|167662446|gb|EDS06576.1| hypothetical protein CLOSCI_02190 [Clostridium scindens ATCC 35704] Length = 610 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR G G + ++ ++ G A +D++ + + +I CA+G +AA Sbjct: 50 QTCGKCVPCRIGLGQLNHFIKDVLDGKATMETLDIMEQTALSIMESADCAIGYEAANMVY 109 Query: 402 QGLI 405 +GLI Sbjct: 110 KGLI 113 >gi|15641030|ref|NP_230661.1| electron transport complex protein RnfC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081189|ref|YP_002809740.1| RnfC-related protein [Vibrio cholerae M66-2] gi|229505386|ref|ZP_04394896.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286] gi|229510944|ref|ZP_04400423.1| electron transport complex protein RnfC [Vibrio cholerae B33] gi|229608405|ref|YP_002879053.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236] gi|9655479|gb|AAF94176.1| RnfC-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009077|gb|ACP05289.1| RnfC-related protein [Vibrio cholerae M66-2] gi|229350909|gb|EEO15850.1| electron transport complex protein RnfC [Vibrio cholerae B33] gi|229357609|gb|EEO22526.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286] gi|229371060|gb|ACQ61483.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236] Length = 801 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239 >gi|255522301|ref|ZP_05389538.1| hypothetical protein LmonocFSL_13977 [Listeria monocytogenes FSL J1-175] Length = 211 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL++NA E EP D +MR+ I+ + +GA A I + + E +L++ Sbjct: 32 YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 91 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196 A+ E D + +H Y G+E ++ + G R+ PP P Sbjct: 92 AITEL--------------DASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 132 Query: 197 ANVG 200 VG Sbjct: 133 LMVG 136 >gi|255017212|ref|ZP_05289338.1| hypothetical protein LmonF_04473 [Listeria monocytogenes FSL F2-515] Length = 169 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL++NA E EP D +MR+ I+ + +GA A I + + E +L++ Sbjct: 32 YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 91 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196 A+ E D + +H Y G+E ++ + G R+ PP P Sbjct: 92 AITEL--------------DASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 132 Query: 197 ANVG 200 VG Sbjct: 133 LMVG 136 >gi|328474563|gb|EGF45368.1| electron transport complex protein RnfC [Vibrio parahaemolyticus 10329] Length = 907 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D +M+ Sbjct: 134 DTLIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDKLMQE 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 LI+G I + I Sbjct: 190 HAEELIQGIEIVEHILKPKLTII 212 >gi|300114448|ref|YP_003761023.1| electron transport complex RnfABCDGE type subunit C [Nitrosococcus watsonii C-113] gi|299540385|gb|ADJ28702.1| electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus watsonii C-113] Length = 515 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 N ++ +G+ G GGAGF +K + P + L++N E EP D +MR Sbjct: 131 NLIRRAGIVGLGGAGFPAFIKLNPGPH---PKVKTLILNGAECEPYITCDEALMRERAEE 187 Query: 105 LIEGCVIASFAIGAHCAFI 123 +I+G I + A+ H I Sbjct: 188 IIQGAAIMAHALNVHHCLI 206 >gi|153800907|ref|ZP_01955493.1| RnfC-related protein [Vibrio cholerae MZO-3] gi|124123498|gb|EAY42241.1| RnfC-related protein [Vibrio cholerae MZO-3] Length = 853 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212 >gi|313619417|gb|EFR91131.1| PduS type ferredoxin, putative [Listeria innocua FSL S4-378] Length = 455 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 67/320 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 7 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E AS + Sbjct: 60 VETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITELNAS--------------VT 105 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276 W +++ K +++G V P ++ + F+ C GG Sbjct: 150 ------WNVFHAIQDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 198 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D L L G M G + D + E T+ +IV + + + K ++ Sbjct: 199 LDEYLF----------LDGGPMMGKLNDQSTIAEKVVTKTTSGMIVAEDTGYLHKLHYQT 248 Query: 337 --SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 249 VEQIFNETKSACIQCSLCSD 268 >gi|153824972|ref|ZP_01977639.1| RnfC-related protein [Vibrio cholerae MZO-2] gi|149741484|gb|EDM55514.1| RnfC-related protein [Vibrio cholerae MZO-2] Length = 853 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212 >gi|253682064|ref|ZP_04862861.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum D str. 1873] gi|253561776|gb|EES91228.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum D str. 1873] Length = 439 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 72/316 (22%), Positives = 120/316 (37%), Gaps = 62/316 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ I+ VK +G+ G GGA F T +K + P D +++N E EP D Sbjct: 118 EMTKEEIVELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E + ++EG I +I + E+L+ A + Sbjct: 175 LMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDIP------------ 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ S+ K+ P K P A GC V NV ++ Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYSVM-KREVPSGKLPADA-----GC--IVQNVNTVRE 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V + G S ++ +++G V P + + +++ EL+E C G + Sbjct: 272 VYNAVVNGRPTIS----------RVVTVTGEAVKNPKNLRVRLGMSYRELVEA-CDGFK- 319 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 ++ + VI GG MG + T V V+ S+ I+ + Sbjct: 320 --EDPVKVISGGPM---------------------MGMAVSTLDVPVIKGSSGILCLTEK 356 Query: 336 LSVFYKHESCGQCTPC 351 +V SC +C C Sbjct: 357 QAVLPDESSCIRCGRC 372 >gi|298380776|ref|ZP_06990375.1| electron transport complex protein RnfC [Escherichia coli FVEC1302] gi|298278218|gb|EFI19732.1| electron transport complex protein RnfC [Escherichia coli FVEC1302] Length = 588 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|229525628|ref|ZP_04415033.1| electron transport complex protein RnfC [Vibrio cholerae bv. albensis VL426] gi|229339209|gb|EEO04226.1| electron transport complex protein RnfC [Vibrio cholerae bv. albensis VL426] Length = 841 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239 >gi|255505118|ref|ZP_05344567.3| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella formatexigens DSM 14469] gi|255269103|gb|EET62308.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella formatexigens DSM 14469] Length = 463 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 + I++ ++ +G+ G GGAGF T +K MPK D +++VN E EP D +M Sbjct: 144 KQEILDAIREAGIVGLGGAGFPTHVK--LMPK-NPDAIDHIIVNGAECEPYLTSDYRMMI 200 Query: 100 HEPHTLIEG 108 P ++ G Sbjct: 201 ENPEQIVGG 209 >gi|210623717|ref|ZP_03294001.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275] gi|210153405|gb|EEA84411.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275] Length = 447 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K+ + ++ I+ +K +G+ G GGA F T +K P ++ ++++N E EP Sbjct: 115 KLEDLSKEEIVEIIKEAGIVGMGGATFPTHVKVCPPPGSTAE---FVILNGAECEPYLTA 171 Query: 94 DRDIMRHEPHTLIEGC 109 D +M +P ++ GC Sbjct: 172 DHRLMLEQPEKVVLGC 187 >gi|210615656|ref|ZP_03290702.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787] gi|210150199|gb|EEA81208.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787] Length = 446 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ I+N + +G+ G GGAGF T +K S PK ++ Y++ N E EP D Sbjct: 125 ELTKEEILNLIGEAGIVGMGGAGFPTKVKLS--PKE-PEKIEYVIANCAECEPYITADYR 181 Query: 97 IMRHEPHTLIEG 108 M P L+ G Sbjct: 182 RMLENPEELVSG 193 >gi|47094983|ref|ZP_00232596.1| PduS protein [Listeria monocytogenes str. 1/2a F6854] gi|258612133|ref|ZP_05267836.2| PduS protein [Listeria monocytogenes F6900] gi|293596510|ref|ZP_05261826.2| PduS protein [Listeria monocytogenes J2818] gi|47016601|gb|EAL07521.1| PduS protein [Listeria monocytogenes str. 1/2a F6854] gi|258608728|gb|EEW21336.1| PduS protein [Listeria monocytogenes F6900] gi|293589768|gb|EFF98102.1| PduS protein [Listeria monocytogenes J2818] Length = 454 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 59 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139 >gi|213418457|ref|ZP_03351523.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 267 Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 19/151 (12%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 ++EG I + + I + + L+A + + + Sbjct: 188 DCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAH--------------- 232 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPR 190 DI + Y G + + +GK G PR Sbjct: 233 DISLRVIPTKYPSGGDKTAHPNTDGKTGSPR 263 >gi|284801462|ref|YP_003413327.1| hypothetical protein LM5578_1215 [Listeria monocytogenes 08-5578] gi|284994604|ref|YP_003416372.1| hypothetical protein LM5923_1168 [Listeria monocytogenes 08-5923] gi|284057024|gb|ADB67965.1| hypothetical protein LM5578_1215 [Listeria monocytogenes 08-5578] gi|284060071|gb|ADB71010.1| hypothetical protein LM5923_1168 [Listeria monocytogenes 08-5923] Length = 451 Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E AS + Sbjct: 56 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136 >gi|293405128|ref|ZP_06649120.1| electron transport complex protein RnfC [Escherichia coli FVEC1412] gi|291427336|gb|EFF00363.1| electron transport complex protein RnfC [Escherichia coli FVEC1412] Length = 633 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|260773218|ref|ZP_05882134.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP 69.14] gi|260612357|gb|EEX37560.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP 69.14] Length = 734 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + +I ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 EQLIEIIRNAGISGMGGAGFPTAKKI----QTGLSRTEILIINAAECEPYITADDALMRF 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 +I+G I + I + ++L+ A E Sbjct: 190 HADEIIQGISIVEHILRPKLTIIGIEDNKPEAIQALEQAAKE 231 >gi|167948564|ref|ZP_02535638.1| electron transport complex, RnfABCDGE type, C subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 285 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I V+ SG+ G GGA F + +K + D LVVN E EP D +M P Sbjct: 56 LIQAVQESGMVGLGGAAFPSHVKLTIPEGKQVD---TLVVNGCECEPYLSCDHRVMLEHP 112 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 L+ G A A G A I + + E LQ Sbjct: 113 KALMRGIRYAMRATGTKQAVIGIEDNKMDAVEQLQ 147 >gi|46907359|ref|YP_013748.1| PduS protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880626|gb|AAT03925.1| PduS protein [Listeria monocytogenes serotype 4b str. F2365] Length = 454 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 67/320 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 59 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 148 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276 W +++ K +++G V P ++ + F+ C GG Sbjct: 149 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 197 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D L L G M G + D + E T+ +IV + + + K ++ Sbjct: 198 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 247 Query: 337 --SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 248 VEQIFNETKSACIQCSLCSD 267 >gi|317133224|ref|YP_004092538.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ethanoligenens harbinense YUAN-3] gi|315471203|gb|ADU27807.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ethanoligenens harbinense YUAN-3] Length = 614 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F + ++CG+C PCR G + ++E ++ A + ++L+ ++ I CA+G AA Sbjct: 46 FCRAQTCGKCVPCRIGLAQLENLLEDVLDHRADMQTLELIERTARVIAASADCAIGWEAA 105 Query: 399 WPIQGLIKNFRPLIEERIDQYHRCN 423 + + FR E I + RC Sbjct: 106 NMVLKGVHGFRDDYIEHI-THGRCT 129 >gi|153829524|ref|ZP_01982191.1| electron transport complex protein RnfC [Vibrio cholerae 623-39] gi|148874984|gb|EDL73119.1| electron transport complex protein RnfC [Vibrio cholerae 623-39] Length = 853 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTVI 212 >gi|313157095|gb|EFR56525.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes sp. HGB5] Length = 447 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II +K +G+ G GGA F T +K S P + L++N E EP D M Sbjct: 125 IIARIKDAGIVGMGGATFPTHVKLSVPP---GRKAEALIINGVECEPYLTSDHRTMLEHG 181 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 L+ G I AI A+I Sbjct: 182 EELLVGVTILMKAIAVEKAYI 202 >gi|331663101|ref|ZP_08364011.1| electron transport complex protein RnfC [Escherichia coli TA143] gi|331058900|gb|EGI30877.1| electron transport complex protein RnfC [Escherichia coli TA143] Length = 640 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|293409940|ref|ZP_06653516.1| conserved hypothetical protein [Escherichia coli B354] gi|291470408|gb|EFF12892.1| conserved hypothetical protein [Escherichia coli B354] Length = 634 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|254898697|ref|ZP_05258621.1| hypothetical protein LmonJ_02740 [Listeria monocytogenes J0161] Length = 451 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E AS + Sbjct: 56 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136 >gi|291288394|ref|YP_003505210.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290885554|gb|ADD69254.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 657 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 17/131 (12%) Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC-GQCTPCREG 354 G+ A++++DG +V D D++ A+ E C G+C P R G Sbjct: 37 GKPLKALINWDGF------------LVYDEGVDMLAALANYMEEISSEGCCGRCFPGRVG 84 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 T + + ++ G + EI+ +++++I C + + P++ ++ FR + Sbjct: 85 TKLLAEQLMKIRSGETSEEEINKAVDMAESIFNSAKCTVAPTSTVPVRAFLREFRDQVTA 144 Query: 415 RI----DQYHR 421 ++ +YH+ Sbjct: 145 QVAKGTTEYHK 155 >gi|258611525|ref|ZP_05233188.2| PduS protein [Listeria monocytogenes FSL N3-165] gi|258600897|gb|EEW14222.1| PduS protein [Listeria monocytogenes FSL N3-165] Length = 454 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 59 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139 >gi|254993051|ref|ZP_05275241.1| PduS protein [Listeria monocytogenes FSL J2-064] Length = 451 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 67/320 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E AS + Sbjct: 56 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276 W +++ K +++G V P ++ + F+ C GG Sbjct: 146 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 194 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D L L G M G + D + E T+ +IV + + + K ++ Sbjct: 195 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 244 Query: 337 --SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 245 VEQIFNETKSACIQCSLCSD 264 >gi|170755456|ref|YP_001780021.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum B1 str. Okra] gi|169120668|gb|ACA44504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum B1 str. Okra] Length = 439 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 54/300 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A + G+ Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKA-----SEGI-------- 221 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V++ A Sbjct: 222 --ANIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAGCV--------VQNTAT 268 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V I Y+ ++ +++G V P + + EL+E CGG + Sbjct: 269 VREI-------YNAVVLGRPLTERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYK- 319 Query: 276 GWDNLLAVIPGGS----SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 ++ + VI GG ++P L ++G+ GL + TAA V+ +++ I+ Sbjct: 320 --EDPVKVISGGPMMGMTIPTLDIPTVKGS----SGLLSL-----TAAQAVLPQASSCIR 368 >gi|322804644|emb|CBZ02196.1| electron transport complex protein RnfC [Clostridium botulinum H04402 065] Length = 403 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P + ++VNA E EP D Sbjct: 82 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPP---DKKIDSIIVNAAECEPYLTCDHR 138 Query: 97 IMRHEPHTLIEG 108 +M E ++EG Sbjct: 139 LMLEESDKIVEG 150 >gi|47091942|ref|ZP_00229736.1| PduS protein [Listeria monocytogenes str. 4b H7858] gi|254932978|ref|ZP_05266337.1| PduS protein [Listeria monocytogenes HPB2262] gi|47019658|gb|EAL10397.1| PduS protein [Listeria monocytogenes str. 4b H7858] gi|293584536|gb|EFF96568.1| PduS protein [Listeria monocytogenes HPB2262] gi|328475177|gb|EGF45958.1| PduS protein [Listeria monocytogenes 220] gi|332311528|gb|EGJ24623.1| PduS type ferredoxin [Listeria monocytogenes str. Scott A] Length = 451 Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 67/320 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 56 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276 W +++ K +++G V P ++ + F+ C GG Sbjct: 146 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 194 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D L L G M G + D + E T+ +IV + + + K ++ Sbjct: 195 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 244 Query: 337 --SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 245 VEQIFNETKSACIQCSLCSD 264 >gi|283785156|ref|YP_003365021.1| electron transport complex protein [Citrobacter rodentium ICC168] gi|282948610|emb|CBG88201.1| electron transport complex protein [Citrobacter rodentium ICC168] Length = 678 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 L RD +I + G+ G GGAGF TG+K + D+ L++NA E EP D Sbjct: 128 LSHSRDELITRIHQYGVAGLGGAGFPTGVKL----QGGGDKIATLIINAAECEPYITADD 183 Query: 96 DIMRHEPHTLIEGCVI 111 +M+ ++EG I Sbjct: 184 RLMQDCAAEIVEGIRI 199 >gi|237809075|ref|YP_002893515.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] gi|237501336|gb|ACQ93929.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] Length = 483 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 46/240 (19%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIM 98 R+ +IN V+ +G+ G GGA F T K D L++N E EP TC DR +M Sbjct: 115 REEMINLVEEAGIVGMGGAMFPTSDKLRLSMHYLID---TLIINGSECEPYLTCDDR-LM 170 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKL 155 + + ++ G A FI + + E I E+L A GL Sbjct: 171 QEQGDRIMGGIRYLQQITLADKVFIGIEENKPEAIAAMEALCKAEKNMQVVGL------- 223 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 Y G E L+E++ G++ P K A+VG+ V NV + Sbjct: 224 -----------PALYPMGSEKQLIEAVTGRQ-VPSGK--LSADVGVL-----VQNVATSI 264 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 + LR FGR ++ +ISG V P V + + E++ + CGG++ Sbjct: 265 AIFEALR--------FGRPLTH--RVITISGDAVEVPSNVMAPVGMPISEIVAQ-CGGLK 313 >gi|16803182|ref|NP_464667.1| hypothetical protein lmo1142 [Listeria monocytogenes EGD-e] gi|16410558|emb|CAC99220.1| lmo1142 [Listeria monocytogenes EGD-e] Length = 454 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 59 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139 >gi|313624158|gb|EFR94226.1| PduS type ferredoxin, putative [Listeria innocua FSL J1-023] Length = 455 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 7 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 60 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 105 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 140 >gi|254291762|ref|ZP_04962548.1| RnfC-related protein [Vibrio cholerae AM-19226] gi|150422355|gb|EDN14316.1| RnfC-related protein [Vibrio cholerae AM-19226] Length = 854 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 H +I+G I + I Sbjct: 190 YAHEIIQGIEIVEHILKPKLTVI 212 >gi|290894304|ref|ZP_06557270.1| PduS protein [Listeria monocytogenes FSL J2-071] gi|290556123|gb|EFD89671.1| PduS protein [Listeria monocytogenes FSL J2-071] Length = 454 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 59 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139 >gi|153938550|ref|YP_001389736.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum F str. Langeland] gi|168181230|ref|ZP_02615894.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Bf] gi|170759143|ref|YP_001785705.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A3 str. Loch Maree] gi|226947599|ref|YP_002802690.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A2 str. Kyoto] gi|237793688|ref|YP_002861240.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Ba4 str. 657] gi|152934446|gb|ABS39944.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum F str. Langeland] gi|169406132|gb|ACA54543.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A3 str. Loch Maree] gi|182675506|gb|EDT87467.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Bf] gi|226843244|gb|ACO85910.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A2 str. Kyoto] gi|229260411|gb|ACQ51444.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Ba4 str. 657] gi|295317824|gb|ADF98201.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum F str. 230613] Length = 439 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVI 111 +M E ++EG I Sbjct: 175 LMLEESDKIVEGLKI 189 >gi|323486693|ref|ZP_08092014.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum WAL-14163] gi|323692168|ref|ZP_08106411.1| electron transport complex [Clostridium symbiosum WAL-14673] gi|323400074|gb|EGA92451.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum WAL-14163] gi|323503742|gb|EGB19561.1| electron transport complex [Clostridium symbiosum WAL-14673] Length = 441 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I N +K +G+ G GGAGF T +K + + D +++VN E EP D +M Sbjct: 124 KEEIRNIIKEAGIVGLGGAGFPTHVKLTPKDEAAID---HVIVNGAECEPYLTSDYRVMM 180 Query: 100 HEPHTLIEG 108 P +I G Sbjct: 181 ERPEQIIGG 189 >gi|224502562|ref|ZP_03670869.1| hypothetical protein LmonFR_08584 [Listeria monocytogenes FSL R2-561] gi|254830104|ref|ZP_05234759.1| hypothetical protein Lmon1_02045 [Listeria monocytogenes 10403S] Length = 451 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E AS + Sbjct: 56 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136 >gi|170682353|ref|YP_001743625.1| electron transport complex protein RnfC [Escherichia coli SMS-3-5] gi|226735444|sp|B1LEQ7|RNFC_ECOSM RecName: Full=Electron transport complex protein rnfC gi|170520071|gb|ACB18249.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli SMS-3-5] Length = 676 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|197334471|ref|YP_002155696.1| electron transport complex protein RnfC [Vibrio fischeri MJ11] gi|197315961|gb|ACH65408.1| electron transport complex protein RnfC [Vibrio fischeri MJ11] Length = 784 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I ++ SG+ G GGAGF T K + + L++NA E EP D +MR Sbjct: 137 LIERIRQSGISGMGGAGFPTSRKI----QSGIGKAEMLIINAAECEPYITADDRLMREHA 192 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +I+G I + I + ++L AV Sbjct: 193 EEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAV 230 >gi|168177711|ref|ZP_02612375.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum NCTC 2916] gi|182670754|gb|EDT82728.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum NCTC 2916] Length = 439 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVI 111 +M E ++EG I Sbjct: 175 LMLEESDKIVEGLKI 189 >gi|255526899|ref|ZP_05393795.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] gi|255509405|gb|EET85749.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] Length = 384 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 30/204 (14%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ N E EP + ++ P +I G A GA A+I ++ + + +SL+ Sbjct: 127 YIIANCVECEPVLRHNIKLIEENPGIVIRGIECAMKVTGAPKAYIGIKAKNKKAVQSLKN 186 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A L G N DI V Y GEE AL+ ++ GK +P + P A Sbjct: 187 A--------LKGRN-------DIEVSEVKNLYPMGEERALINAIFGKWLEPT-QLPLEAK 230 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 + T VN ++ ++ + + N G + HV + V Sbjct: 231 CVVINGETLVNITRAVEDRKPVIDKDITIAGKL----NSGKE-----SHVFFQIPV---- 277 Query: 259 SITFDELIEKHCGGIRGGWDNLLA 282 ELIEK CGGI+G + L+ Sbjct: 278 GTPIKELIEK-CGGIKGQYGELVV 300 >gi|226223743|ref|YP_002757850.1| PduS protein [Listeria monocytogenes Clip81459] gi|254823604|ref|ZP_05228605.1| PduS protein [Listeria monocytogenes FSL J1-194] gi|254852986|ref|ZP_05242334.1| PduS protein [Listeria monocytogenes FSL R2-503] gi|300764288|ref|ZP_07074282.1| PduS protein [Listeria monocytogenes FSL N1-017] gi|225876205|emb|CAS04914.1| Putative PduS protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606329|gb|EEW18937.1| PduS protein [Listeria monocytogenes FSL R2-503] gi|293592827|gb|EFG00588.1| PduS protein [Listeria monocytogenes FSL J1-194] gi|300514940|gb|EFK41993.1| PduS protein [Listeria monocytogenes FSL N1-017] Length = 451 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 67/320 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 56 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 +H Y G+E ++ + G R+ PP P VG V+NV ++ Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145 Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276 W +++ K +++G V P ++ + F+ C GG Sbjct: 146 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 194 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D L L G M G + D + E T+ +IV + + + K ++ Sbjct: 195 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 244 Query: 337 --SVFYKHES-CGQCTPCRE 353 +F + +S C QC+ C + Sbjct: 245 VEQIFNETKSACIQCSLCSD 264 >gi|145219605|ref|YP_001130314.1| electron transport complex, RnfABCDGE type, C subunit [Prosthecochloris vibrioformis DSM 265] gi|145205769|gb|ABP36812.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium phaeovibrioides DSM 265] Length = 441 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ II +K +G+ G GGAGF + +K S P D +++N E EP D +M Sbjct: 121 KESIIERIKDAGIVGMGGAGFPSSVKLSPPPDKTID---TIILNGAECEPFLTADHRVMV 177 Query: 100 HEPHTLIEGC-VIASFAIGAHCAFI 123 +I+G +I S G FI Sbjct: 178 EYAEEVIKGLEIITSLFQGKAKPFI 202 >gi|308094766|ref|ZP_07663043.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AN-5034] gi|308093502|gb|EFO43197.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AN-5034] Length = 772 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D +M+ Sbjct: 37 DALIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDKLMQE 92 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 LI+G I + I Sbjct: 93 HAEELIQGIEIVEHILKPKLTII 115 >gi|220935791|ref|YP_002514690.1| electron transport complex, RnfABCDGE type, C subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219997101|gb|ACL73703.1| electron transport complex, RnfABCDGE type, C subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 532 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 N ++ +G+ G GGA F +K + P D LV+N E EP D +MR Sbjct: 135 NRIREAGIVGLGGAAFPAAVKITPRPGQTLD---CLVINGAECEPYITCDDSLMRTHARG 191 Query: 105 LIEGCVIASFAIGAHCAFI 123 +IEG I A+ C I Sbjct: 192 VIEGIRILMQALKPSCCLI 210 >gi|153931630|ref|YP_001382770.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. ATCC 19397] gi|153936091|ref|YP_001386321.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. Hall] gi|152927674|gb|ABS33174.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. ATCC 19397] gi|152932005|gb|ABS37504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. Hall] Length = 439 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVI 111 +M E ++EG I Sbjct: 175 LMLEESDKIVEGLKI 189 >gi|283768913|ref|ZP_06341823.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia extructa W1219] gi|283104466|gb|EFC05840.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia extructa W1219] Length = 438 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 107/259 (41%), Gaps = 43/259 (16%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +++ VK +G+ G GGAGF T +K+ + D L++NA E EP D M Sbjct: 120 REELLDFVKNAGIMGLGGAGFPTYVKYMKV-----DGIDMLIINAVECEPFLTADYKAME 174 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + G V+A + + A + E +++ + A ++E + G ++ Sbjct: 175 ENMDSFKLG-VLALWKLSAAPKAVVAIKE---DKKEMIAKLEEAFVES--------GVEI 222 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 + Y G E L L KK RL P+ +GL VNN T Sbjct: 223 KAV----PDMYPMGYERTLAYQLT-KKNYDRL----PSEIGL-----IVNNAN------T 262 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 + G + +G + K ++SG V P TV + EL+ K GG++ G + Sbjct: 263 AIALGKALVTGMPITH----KYVTVSGDAVKKPQTVYVPVGTISGELL-KAVGGVKEGIE 317 Query: 279 NLLAVIPGGSSVPCLPAGQ 297 ++L + G +P Q Sbjct: 318 DILMINGGPMMGRAIPNNQ 336 >gi|158320804|ref|YP_001513311.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus oremlandii OhILAs] gi|158141003|gb|ABW19315.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus oremlandii OhILAs] Length = 442 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 38/233 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ +K +G+ G GGA F T +K S P D ++N E EP D +M Sbjct: 123 EEILAAIKDAGIVGMGGATFPTHVKLSVPPDKKVDN---FILNGAECEPFLTADHRLMLE 179 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 ++EG + + FI + +++ A ++ ++G ++K Sbjct: 180 HSDEIVEGLLAMMKVVNVQNGFIGIEDNKPDAIAAMKKAAEKYPNIKVVGLHTK------ 233 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 Y G E L+ + K+ P PA+ G VNNV + A V Sbjct: 234 ---------YPQGAEKQLIYACT-KREVPSGG--LPADAG-----AIVNNVATAAQVAKT 276 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 LR G ++ +++G + P + + + E+IE+ CGG Sbjct: 277 LRTGMPLID----------RITTVTGSAIANPKNLLMKIGVPIKEVIEQ-CGG 318 >gi|148378371|ref|YP_001252912.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. ATCC 3502] gi|148287855|emb|CAL81921.1| electron transport complex protein [Clostridium botulinum A str. ATCC 3502] Length = 439 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVI 111 +M E ++EG I Sbjct: 175 LMLEESDKIVEGLKI 189 >gi|77360046|ref|YP_339621.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis TAC125] gi|76874957|emb|CAI86178.1| Electron transport complex protein rnfC [Pseudoalteromonas haloplanktis TAC125] Length = 846 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 D +IN + +G+ G GGAGF T +K + +L++NA E EP D +M Sbjct: 132 SHDELINIIHQAGISGMGGAGFPTYVKADTKQPI-----EFLIINAVECEPYITADDMLM 186 Query: 99 RHEPHTLIEG 108 R +++G Sbjct: 187 REHAKQIVQG 196 >gi|225572996|ref|ZP_03781751.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM 10507] gi|225039647|gb|EEG49893.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM 10507] Length = 653 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 40/236 (16%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I++ V+ +G+ G GGAGF T +K V +++N E EP D ++ Sbjct: 344 DEIVDIVREAGIVGMGGAGFPTSVKLKPAKPV-----DTILLNGCECEPLLTADHRVLLE 398 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 +I G +GA I + E LQA + D+D Sbjct: 399 FADDVIYGLKAIIKTVGAEKGLIVIEDNKPDAIELLQAKTADI-------------SDID 445 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 ++V Y G E L++ + G++ PR PA+VG V+N+ + + Sbjct: 446 VVV--AKTKYPQGAEKMLIKRVMGRQ-VPR--GGLPADVG-----CVVSNISTTKAIADA 495 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 ++ G ++ +++G + P + ELI+ +CGG+ G Sbjct: 496 IKTGMPLIE----------RVVTVTGERIKKPGNYIVKIGTNVKELID-YCGGVIG 540 >gi|59711540|ref|YP_204316.1| electron transport complex protein RnfC [Vibrio fischeri ES114] gi|59479641|gb|AAW85428.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein (Rnf/Rsx reducing system) [Vibrio fischeri ES114] Length = 827 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Query: 43 IINEVKASGLRGRGGAGFSTGMK-WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 +I ++ SG+ G GGAGF T K S + K L++NA E EP D +MR Sbjct: 137 LIERIRQSGISGMGGAGFPTSRKIQSGIGKA-----EMLIINAAECEPYITADDRLMREH 191 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +I+G I + I + ++L AV Sbjct: 192 AEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAV 230 >gi|328466674|gb|EGF37805.1| PduS protein [Listeria monocytogenes 1816] Length = 423 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 61/284 (21%), Positives = 108/284 (38%), Gaps = 60/284 (21%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL++NA E EP D +MR+ I+ + +GA A I + + E +L++ Sbjct: 4 YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 63 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196 A+ E D + +H Y G+E ++ + G R+ PP P Sbjct: 64 AITE--------------LDASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 104 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTV 254 VG V+NV ++ W +++ K +++G V P + Sbjct: 105 LMVG-----CIVSNVSTM------------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLL 147 Query: 255 EESMSITFDELIEKHCGGIRGG--WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 + + F+ C GG D L L G M G + D + E Sbjct: 148 DVPVGTPFEV-----CLAAAGGTNLDEYLF----------LDGGPMMGKLNDKSTIAEKV 192 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRL--SVFYKHES-CGQCTPCRE 353 T+ +IV + + + K ++ +F + +S C QC+ C + Sbjct: 193 VTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSD 236 >gi|188995522|ref|YP_001929774.1| electron transport complex RnfABCDGE type C subunit [Porphyromonas gingivalis ATCC 33277] gi|188595202|dbj|BAG34177.1| electron transport complex RnfABCDGE type C subunit [Porphyromonas gingivalis ATCC 33277] Length = 443 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++ A+G+ G GGA F T +K S P ++ L++NA E EP D +M Sbjct: 126 IVAKISAAGIVGLGGATFPTHVKLSPPP---GNKAEILIINAVECEPYLTSDHVLMLEHG 182 Query: 103 HTLIEGCVIASFAIGAHCAFIYV 125 ++ G I AI + A I V Sbjct: 183 EEIMIGVSILMKAIQVNKAVIGV 205 >gi|187732180|ref|YP_001880384.1| electron transport complex protein RnfC [Shigella boydii CDC 3083-94] gi|226735456|sp|B2U2C8|RNFC_SHIB3 RecName: Full=Electron transport complex protein rnfC gi|187429172|gb|ACD08446.1| electron transport complex, RnfABCDGE type, C subunit [Shigella boydii CDC 3083-94] Length = 708 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ L+EG I Sbjct: 186 MQDCAAQLVEGIRI 199 >gi|323968397|gb|EGB63803.1| electron transporter [Escherichia coli M863] Length = 740 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|302338423|ref|YP_003803629.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta smaragdinae DSM 11293] gi|301635608|gb|ADK81035.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta smaragdinae DSM 11293] Length = 442 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Query: 27 GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G +D + K E+ DW ++ +V +G+ G GGA F + +K+S +PK + Y Sbjct: 105 GAFDRLGK-EERAGDWTQLSAEALMAKVVENGIVGLGGATFPSHVKFS-VPK--GKKAEY 160 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 VVN E EP D +M +IEG I S Sbjct: 161 FVVNGVECEPYLTADHRLMLERADQIIEGIRIIS 194 >gi|306813407|ref|ZP_07447597.1| electron transport complex protein RnfC [Escherichia coli NC101] gi|305853152|gb|EFM53592.1| electron transport complex protein RnfC [Escherichia coli NC101] Length = 740 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|218262923|ref|ZP_03477230.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii DSM 18315] gi|218223065|gb|EEC95715.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii DSM 18315] Length = 443 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++++ A+G+ G GGA F T +K MP S + +++NA E EP D +M + Sbjct: 126 IVDKIAAAGIVGLGGATFPTQVK--LMPPPGS-KAEIIIINAVECEPYLTSDHSLMMEKG 182 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G + A+ + A I Sbjct: 183 EQILVGVTLLMKAVNVNKAII 203 >gi|51246896|ref|YP_066780.1| electron transfer protein (PduS) [Desulfotalea psychrophila LSv54] gi|50877933|emb|CAG37773.1| probable electron transfer protein (PduS) [Desulfotalea psychrophila LSv54] Length = 447 Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust. Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 47/235 (20%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ + +G+ G GGAGF +K+ + ++ N E EP D+ IMR Sbjct: 5 KDSLLRSILDAGIVGEGGAGFPAHVKY-------DTQVDTVIANGCECEPLLHTDQHIMR 57 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 ++ GA I ++ ++ + + +A + G+ +L Sbjct: 58 TRAADIVVAMQAIVSVTGATRGVIGIKSKYTE--------IAKIFADCIEGTGLELAQLD 109 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVV 217 + Y G+E AL+ + GK PP P +VG V NV ++A V Sbjct: 110 NF--------YPAGDEQALVYEVTGKT-----IPPLGLPKDVG-----AVVANVGTLAEV 151 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++ + K+ +++G V P + + E + HCGG Sbjct: 152 AAAIKGTPLTH-----------KIVTVTGDVGSPAVIRVPLGTKMSECL-AHCGG 194 >gi|331003602|ref|ZP_08327098.1| hypothetical protein HMPREF0491_01960 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412322|gb|EGG91714.1| hypothetical protein HMPREF0491_01960 [Lachnospiraceae oral taxon 107 str. F0167] Length = 610 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 D+ +A L+ ++CG+C PCR G G + +++E ++ G + L+ + + +I Sbjct: 37 VDMSRAFLELA---HAQTCGKCVPCRIGLGQLEKLIENVLDGKGSMASLKLMEKTALSIM 93 Query: 387 GRTICALG-DAAAWPIQGLI 405 CA+G +AA +G+I Sbjct: 94 ESADCAIGYEAANMVYKGII 113 >gi|315650048|ref|ZP_07903127.1| pyridine nucleotide-disulfide oxidoreductase [Eubacterium saburreum DSM 3986] gi|315487677|gb|EFU77981.1| pyridine nucleotide-disulfide oxidoreductase [Eubacterium saburreum DSM 3986] Length = 595 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 D+ +A L+ ++CG+C PCR G G + +++E ++ G + L+ + + +I Sbjct: 22 VDMSRAFLELA---HAQTCGKCVPCRIGLGQLEKLIENVLDGKGSMASLKLMEKTALSIM 78 Query: 387 GRTICALG-DAAAWPIQGLI 405 CA+G +AA +G+I Sbjct: 79 ESADCAIGYEAANMVYKGII 98 >gi|313609317|gb|EFR84954.1| PduS type ferredoxin, putative [Listeria monocytogenes FSL F2-208] Length = 427 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL++NA E EP D +MR+ I+ + +GA A I + + E +L++ Sbjct: 8 YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 67 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196 A+ E D + +H Y G+E ++ + G R+ PP P Sbjct: 68 AITE--------------LDASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 108 Query: 197 ANVG 200 VG Sbjct: 109 LMVG 112 >gi|284921553|emb|CBG34625.1| electron transport complex protein [Escherichia coli 042] Length = 741 Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|323978231|gb|EGB73317.1| electron transporter [Escherichia coli TW10509] Length = 740 Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|218705130|ref|YP_002412649.1| electron transport complex protein RnfC [Escherichia coli UMN026] gi|300901564|ref|ZP_07119633.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 198-1] gi|226735442|sp|B7NB83|RNFC_ECOLU RecName: Full=Electron transport complex protein rnfC gi|218432227|emb|CAR13117.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli UMN026] gi|300355031|gb|EFJ70901.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 198-1] Length = 740 Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|217964789|ref|YP_002350467.1| PduS protein [Listeria monocytogenes HCC23] gi|217334059|gb|ACK39853.1| PduS protein [Listeria monocytogenes HCC23] gi|307570650|emb|CAR83829.1| propanediol utilization protein (electron transport protein) [Listeria monocytogenes L99] Length = 451 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++K +G+ G GGAGF T K+S YL++NA E EP D +MR+ Sbjct: 3 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 I+ + +GA A I + + E +L++A+ E D + Sbjct: 56 VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDATVT 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200 +H Y G+E ++ + G R+ PP P VG Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136 >gi|34540141|ref|NP_904620.1| RnfABCDGE type electron transport complex subunit C [Porphyromonas gingivalis W83] gi|34396453|gb|AAQ65519.1| electron transport complex, RnfABCDGE type, C subunit [Porphyromonas gingivalis W83] Length = 443 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ ++ A+G+ G GGA F T +K S P ++ L++NA E EP D +M Sbjct: 126 IVAKISAAGIVGLGGATFPTHVKLSPPP---GNKAEILIINAVECEPYLTSDHVLMLEHG 182 Query: 103 HTLIEGCVIASFAIGAHCAFIYV 125 ++ G I AI + A I V Sbjct: 183 EEIMIGVSILMKAIQVNKAVIGV 205 >gi|239617294|ref|YP_002940616.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga olearia TBF 19.5.1] gi|239506125|gb|ACR79612.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E RD II +K +G+ G GGA F T +K + PK + L++N E EP D Sbjct: 119 EFSRDEIIERIKEAGIVGLGGATFPTHVKLN-PPK--DKKIDVLIINGAECEPYLTVDYR 175 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M +I G A+G A I Sbjct: 176 LMLEMSEKIIRGIRALMKALGVEKAII 202 >gi|239623488|ref|ZP_04666519.1| electron transport complex [Clostridiales bacterium 1_7_47_FAA] gi|239521519|gb|EEQ61385.1| electron transport complex [Clostridiales bacterium 1_7_47FAA] Length = 441 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I + VK +G+ G GGAGF T +K + PK + Y++VN E EP D +M Sbjct: 122 KEEIRSIVKEAGIVGLGGAGFPTHVKLT--PKD-ENAIEYILVNGAECEPYLTSDYRMML 178 Query: 100 HEPHTLIEG 108 EP ++ G Sbjct: 179 EEPEKIVGG 187 >gi|322229364|dbj|BAJ72752.1| unnamed protein product [Lactococcus garvieae] Length = 447 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+CTPCREG + +++++++ A + ++ + + ++ + CA+G DA A + Sbjct: 81 QTCGKCTPCREGIPRIKALLDKVLRYEADRSDVAEIAKRARLLRDTADCAVGYDAGAQVL 140 Query: 402 QGL 404 +GL Sbjct: 141 KGL 143 >gi|251792842|ref|YP_003007568.1| electron transport complex protein RnfC [Aggregatibacter aphrophilus NJ8700] gi|247534235|gb|ACS97481.1| electron transport complex protein RnfC [Aggregatibacter aphrophilus NJ8700] Length = 843 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 +D L K + ++ ++ +G+ G GGA F T K K L++N E EP Sbjct: 125 MDDFLTKTPEQLVEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 TC DR +MR +IEG I + + I V + +L+ A+ Sbjct: 181 TCDDR-LMRDYADEIIEGVRIIRYILRPEKVVIAVEDNKLEAVSALERAL 229 >gi|218699803|ref|YP_002407432.1| electron transport complex protein RnfC [Escherichia coli IAI39] gi|226735439|sp|B7NU04|RNFC_ECO7I RecName: Full=Electron transport complex protein rnfC gi|218369789|emb|CAR17560.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli IAI39] Length = 740 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHKFGVAGLGGAGFPTGVKLQG----GGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|154495029|ref|ZP_02034034.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC 43184] gi|154085579|gb|EDN84624.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC 43184] Length = 443 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I++++ A+G+ G GGA F T +K MP S + +++NA E EP D +M + Sbjct: 126 IVDKIAAAGIVGLGGATFPTQVK--LMPPPGS-KAEIIIINAVECEPYLTSDHSLMMEKG 182 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G + A+ + A I Sbjct: 183 EQILVGVTLLMKAVNVNKAVI 203 >gi|238916166|ref|YP_002929683.1| glutamate synthase (NADPH) small chain [Eubacterium eligens ATCC 27750] gi|238871526|gb|ACR71236.1| glutamate synthase (NADPH) small chain [Eubacterium eligens ATCC 27750] Length = 615 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP-- 400 +SCG+C PCR G + R+ + ++ G A + +D++ ++ I CA+G AA Sbjct: 54 QSCGKCVPCRVGLRQLARLFDDVLDGNATEETLDVIRLTAEGIYYSADCAIGYEAAKLVL 113 Query: 401 --IQGLIKNFRPLIE 413 I G +FR +E Sbjct: 114 KCIDGCEDDFRSHME 128 >gi|327252745|gb|EGE64399.1| electron transport complex protein rnfC [Escherichia coli STEC_7v] Length = 633 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K D+ L++N Sbjct: 12 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIIN 64 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 65 AAECEPYITADDRLMQDCAAQVVEGIRI 92 >gi|154482955|ref|ZP_02025403.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC 27560] gi|149736239|gb|EDM52125.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC 27560] Length = 437 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +++I VK G+ G GGA F T +K + PK + Y++VNA E EP D + Sbjct: 119 KEYIREAVKDCGVVGLGGACFPTNVKLT--PKD-DNAIDYVIVNAAECEPYITSDYRRLV 175 Query: 100 HEPHTLIEGCVI 111 +P +IEG I Sbjct: 176 EQPQEVIEGLKI 187 >gi|256826477|ref|YP_003150436.1| putative glutamate synthase (NADPH) small subunit [Cryptobacterium curtum DSM 15641] gi|256582620|gb|ACU93754.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase [Cryptobacterium curtum DSM 15641] Length = 612 Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 7/78 (8%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR+G + R+++++V A + + ++++I + CA+G A Q Sbjct: 50 QTCGKCVPCRDGIPQLARLLDQVVTCHATTETLIQIRALAQSIRDTSDCAIGYQAG---Q 106 Query: 403 GLIKNFRPLIEERIDQYH 420 G++ +EE D+Y Sbjct: 107 GVLDG----LEEFADEYE 120 >gi|213861431|ref|ZP_03385901.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 82 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL SG V P E T E++E + GG+R G A PGG+ L Sbjct: 2 GTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAH 60 Query: 298 MRGAIMDYDGLKEMGSGLGTA 318 + M+++ + + GS LGTA Sbjct: 61 L-DLPMEFESIGKAGSRLGTA 80 >gi|303257905|ref|ZP_07343914.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderiales bacterium 1_1_47] gi|331000430|ref|ZP_08324105.1| pyridine nucleotide-disulfide oxidoreductase [Parasutterella excrementihominis YIT 11859] gi|302859248|gb|EFL82330.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderiales bacterium 1_1_47] gi|329571762|gb|EGG53442.1| pyridine nucleotide-disulfide oxidoreductase [Parasutterella excrementihominis YIT 11859] Length = 661 Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 +V +++ A+ + K SCG+CTPCR G+ + + +E+ ++G E L + Sbjct: 51 LVFHPHANLLFAMNKYYSTVKDNSCGKCTPCRSGSIIISQALEKALRGDPINWEN--LLD 108 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408 +++ + + C +G + + IK F Sbjct: 109 IARMMRNTSFCGVGQTSPVALIEAIKAF 136 >gi|296102657|ref|YP_003612803.1| electron transport complex protein RnfC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057116|gb|ADF61854.1| electron transport complex protein RnfC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 607 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I+ + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIDRIHQFGVAGLGGAGFPTGVKL----RGGGDKIQTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVIASFAIGAHCAFI 123 ++EG I + + I Sbjct: 188 DCAAQVVEGIRILAHVLQPREVLI 211 >gi|227874303|ref|ZP_03992490.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus F0268] gi|227839854|gb|EEJ50297.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus F0268] Length = 457 Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ I++ V+ +G+ G GGAGF T +K S PK D+ +VN E EP D M Sbjct: 131 REEIVSIVRDAGIVGLGGAGFPTFVKLS--PKEI-DKIDLFLVNGAECEPYLTSDYRDMM 187 Query: 100 HEPHTLIEG 108 P LI G Sbjct: 188 EMPEKLIGG 196 >gi|261253563|ref|ZP_05946136.1| electron transport complex protein RnfC [Vibrio orientalis CIP 102891] gi|260936954|gb|EEX92943.1| electron transport complex protein RnfC [Vibrio orientalis CIP 102891] Length = 881 Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I +++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 DELIEKIRLAGVSGMGGAGFPTAKKI----QSGLARTEILIINAAECEPYITADDMLMRE 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 +I+G + + I + ++LQ A + Sbjct: 190 HADEIIQGIEVVEHILKPKLTVIGIEDNKPEAVKALQHAAE 230 >gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 319 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 23/37 (62%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 D V K ++ G +I EV + L GRGGAGF TG KW Sbjct: 269 DAVSKAVKMGPTQVIKEVTEAKLLGRGGAGFMTGRKW 305 >gi|254509395|ref|ZP_05121478.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio parahaemolyticus 16] gi|219547669|gb|EED24711.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio parahaemolyticus 16] Length = 840 Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 28/186 (15%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 V+ + D +I ++ +G+ G GGAGF T K + R L+VNA E EP Sbjct: 125 VEDYRQSSPDELIEIIRQAGISGMGGAGFPTAKKI----QSGLARTEILIVNAAECEPYI 180 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +M+ +I+G I + I + +LQ A Sbjct: 181 TADDMLMQEHADEIIQGIEIVEHILKPKLTIIGIEDNKPNAVAALQHA------------ 228 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + DI++ Y G E L++ L K+ PA++GL V NV Sbjct: 229 ----ALNKDIVIRVIPTKYPSGGEKQLIKILTNKEVPANG---IPADIGLL-----VQNV 276 Query: 212 ESIAVV 217 S+ + Sbjct: 277 GSLQAI 282 >gi|218708972|ref|YP_002416593.1| hypothetical protein VS_0976 [Vibrio splendidus LGP32] gi|218321991|emb|CAV18003.1| putative membrane protein [Vibrio splendidus LGP32] Length = 276 Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 V+ K D +++ ++ +G+ G GGAGF T K + R L+VNA E EP Sbjct: 137 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 192 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +++ +++G + + I + ++L+ A Sbjct: 193 TSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA------------ 240 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 D DI++ Y G E L++ L K+ Sbjct: 241 ----AKDKDIVIRVIPTKYPSGGEKQLIKILTNKE 271 >gi|257452980|ref|ZP_05618279.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 3_1_5R] gi|317059520|ref|ZP_07924005.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. 3_1_5R] gi|313685196|gb|EFS22031.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. 3_1_5R] Length = 436 Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVK-------ASGLRGRGG 57 ++R+F L G + ++ + W + KI +W EVK G+ G GG Sbjct: 84 EERVFP-LMGTCKSIVIENDGQETWAELSKI----ENWETAEVKDLLAMIREKGIVGIGG 138 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 A F T +K + + L++N E EP D +M P ++IEG I +G Sbjct: 139 ASFPTHVKLN---PPADTKIDTLLLNGAECEPYLNSDNRLMLENPSSIIEGVKIIKKILG 195 Query: 118 AHCAFI 123 A I Sbjct: 196 VSTAII 201 >gi|167038752|ref|YP_001661737.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter sp. X514] gi|300913662|ref|ZP_07130979.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X561] gi|307723323|ref|YP_003903074.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter sp. X513] gi|166852992|gb|ABY91401.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X514] gi|300890347|gb|EFK85492.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X561] gi|307580384|gb|ADN53783.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X513] Length = 443 Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 89/233 (38%), Gaps = 42/233 (18%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II ++ +G+ G GGAGF T +K S + ++VN E EP D +M P Sbjct: 127 IIEIIREAGITGMGGAGFPTHVKLS---PPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ G A+G I V++ +L + +I Sbjct: 184 EKIVFGLKAIMKAVGVERGII---------------GVEKNKPDAILALREASKDEKNIQ 228 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220 + Y G+E L+ ++ G R+ P P +VG+ VN + AV I Sbjct: 229 IATLKVKYPQGDEKRLINAILG-----RIVPSGGLPMDVGVI----VVNAATTKAVADAI 279 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 L G Y ++ +I+GH + P + + +LIE CGG Sbjct: 280 L-EGKPLYE----------RVTTITGHGIKQPKNLLVKIGTPLKDLIE-QCGG 320 >gi|260437062|ref|ZP_05790878.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio crossotus DSM 2876] gi|292810371|gb|EFF69576.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio crossotus DSM 2876] Length = 439 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E +D II ++ +G+ G GGAGF T +K S PK +D ++VN E EP D Sbjct: 118 ELSKDEIIKIIEEAGIVGMGGAGFPTNVKLS--PK-NADIIDSIIVNGAECEPYLTSDYR 174 Query: 97 IMRHEPHTLIEGCVI 111 M + L++G I Sbjct: 175 RMVEQTDKLVKGLKI 189 >gi|301026785|ref|ZP_07190189.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 69-1] gi|300395323|gb|EFJ78861.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 69-1] Length = 804 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R WD+ + R+ +I + G+ G GGAGF TG+K D+ L++N Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|257466640|ref|ZP_05630951.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] gi|315917794|ref|ZP_07914034.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] gi|313691669|gb|EFS28504.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] Length = 436 Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVK-------ASGLRGRGG 57 ++R+F L G + ++ + W + KI +W EVK G+ G GG Sbjct: 84 EERVFP-LMGTCKSIVIENDGQETWAELSKI----ENWETAEVKDLLAMIREKGIVGIGG 138 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 A F T +K + + L++N E EP D +M P ++IEG I +G Sbjct: 139 ASFPTHVKLN---PPADTKIDTLLLNGAECEPYLNSDNRLMLENPSSIIEGVKIIKKILG 195 Query: 118 AHCAFI 123 A I Sbjct: 196 VSTAII 201 >gi|325849927|ref|ZP_08170966.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479951|gb|EGC83034.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 438 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ +K +GL G GGA F +K+S P D +++N E EP D I++ Sbjct: 122 KEKIVEAMKENGLVGMGGAAFPAHIKYS--PNKAVDT---VIINGAECEPYVTCDDYILK 176 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +P +++ + A+ A I + E ++ A+ Sbjct: 177 TKPEIIVDALELLVKAVDAKKGIIAIEDNKQESIEKVRKAI 217 >gi|89092705|ref|ZP_01165658.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92] gi|89083217|gb|EAR62436.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92] Length = 1047 Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + +++ ++ G+ G GGAGF T +K + LV+NA E EP D +M Sbjct: 123 SKQELLDFIRFRGISGMGGAGFPTDVKLHLGDDHIVN---TLVINAMECEPYITADDMLM 179 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R +++G I + + H I + +++ AV E SKL D Sbjct: 180 REHADQVVKGIEIIAHLLKPHHVMIGTEDNKPQAIRAMEQAVAE----------SKL--D 227 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 +DIIV Y G E L++ L G + P K PA+VG+ Sbjct: 228 IDIIV--VPTVYPSGGEKQLIKLLTGVEV-PSGK--IPADVGI 265 >gi|302389269|ref|YP_003825090.1| electron transport complex, RnfABCDGE type, C subunit [Thermosediminibacter oceani DSM 16646] gi|302199897|gb|ADL07467.1| electron transport complex, RnfABCDGE type, C subunit [Thermosediminibacter oceani DSM 16646] Length = 438 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D I N ++ +G+ G GGAGF T +K S D ++VN E EP D Sbjct: 118 EMTPDEIKNLIREAGIVGMGGAGFPTQVKLSPPAGKTID---TIIVNGAECEPYLTADHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M P ++ G A G A+I Sbjct: 175 LMVERPDDVVLGLRAIMKATGVEKAYI 201 >gi|218133996|ref|ZP_03462800.1| hypothetical protein BACPEC_01886 [Bacteroides pectinophilus ATCC 43243] gi|217991371|gb|EEC57377.1| hypothetical protein BACPEC_01886 [Bacteroides pectinophilus ATCC 43243] Length = 611 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 36/67 (53%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G G + + ++++G A + + ++K I CA+G AA + Sbjct: 50 QTCGKCVPCRVGLGQLADYLNQVLEGEATMETLGEIERLAKVISNSADCAIGYEAANMVL 109 Query: 403 GLIKNFR 409 ++ FR Sbjct: 110 RGLEGFR 116 >gi|257462466|ref|ZP_05626878.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D12] gi|317060123|ref|ZP_07924608.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12] gi|313685799|gb|EFS22634.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12] Length = 436 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKA-------SGLRGRGG 57 ++R+F L G + ++ + W + KI +W EVK G+ G GG Sbjct: 84 EERVFP-LMGTCKSIVIENDGQETWAELSKI----ENWETAEVKELLAMIREKGIVGIGG 138 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 A F T +K + + L++N E EP D +M P ++IEG I +G Sbjct: 139 ASFPTHVKLN---PPADTKIDTLLLNGAECEPYLNSDNRLMLENPSSIIEGVKIIKKILG 195 Query: 118 AHCAFI 123 A I Sbjct: 196 VSTAVI 201 >gi|261856372|ref|YP_003263655.1| electron transport complex, RnfABCDGE type, C subunit [Halothiobacillus neapolitanus c2] gi|261836841|gb|ACX96608.1| electron transport complex, RnfABCDGE type, C subunit [Halothiobacillus neapolitanus c2] Length = 567 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHEPHTL 105 ++ +G+ G GGA F T K + L++N E EP TC DR +MR +P + Sbjct: 140 LREAGIVGLGGAVFPTASKMATGQAAV----RTLILNGAECEPYITCDDR-LMREQPAEI 194 Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 + G IA IGA I + +LQ+A Sbjct: 195 LRGAAIAMHMIGAERCLIGIEDNKPEALAALQSA 228 >gi|210610169|ref|ZP_03288286.1| hypothetical protein CLONEX_00472 [Clostridium nexile DSM 1787] gi|210152599|gb|EEA83605.1| hypothetical protein CLONEX_00472 [Clostridium nexile DSM 1787] Length = 202 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI- 401 ++CG+C PCR G G + ++ ++ G A +D++ + + +I CA+G AA + Sbjct: 92 QTCGKCVPCRIGLGQLNGFIKDVLDGNATMETLDIMEQTALSIMESADCAIGYEAAHTVY 151 Query: 402 QGLI 405 +GLI Sbjct: 152 KGLI 155 >gi|300921314|ref|ZP_07137681.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 115-1] gi|300411733|gb|EFJ95043.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 115-1] Length = 576 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|300959104|ref|ZP_07171191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 175-1] gi|300314283|gb|EFJ64067.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 175-1] Length = 468 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 23 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 78 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 79 MQDCAAQVVEGIRI 92 >gi|212695714|ref|ZP_03303842.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM 7454] gi|212677387|gb|EEB36994.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM 7454] Length = 443 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I+ +K +GL G GGA F +K+S P D +++N E EP D I++ Sbjct: 127 KEKIVEAMKENGLVGMGGAAFPAHIKYS--PNKAVDT---VIINGAECEPYVTCDDYILK 181 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +P +++ + A+ A I + E ++ A+ Sbjct: 182 TKPEIIVDALELLVKAVDAKKGIIAIEDNKQEAIEKVRKAI 222 >gi|262165247|ref|ZP_06032984.1| electron transport complex protein RnfC [Vibrio mimicus VM223] gi|262024963|gb|EEY43631.1| electron transport complex protein RnfC [Vibrio mimicus VM223] Length = 825 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGAGF T K + R L++NA E EP D +MR + +I Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQHANEII 195 Query: 107 EGCVIASFAIGAHCAFI 123 +G I + I Sbjct: 196 QGIEIVEHILKPKLTII 212 >gi|301050123|ref|ZP_07197027.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 185-1] gi|300298145|gb|EFJ54530.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 185-1] Length = 579 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|301029281|ref|ZP_07192385.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 196-1] gi|299877809|gb|EFI86020.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 196-1] Length = 520 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 74 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 129 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 130 MQDCAAQVVEGIRI 143 >gi|315297365|gb|EFU56645.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 16-3] Length = 580 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|301329557|ref|ZP_07222340.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 78-1] gi|300844326|gb|EFK72086.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 78-1] Length = 576 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|300931505|ref|ZP_07146822.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 187-1] gi|300460699|gb|EFK24192.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 187-1] Length = 553 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 104 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 159 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 160 MQDCAAQVVEGIRI 173 >gi|300927478|ref|ZP_07143191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 182-1] gi|300416582|gb|EFJ99892.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 182-1] Length = 575 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|300990137|ref|ZP_07179144.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 200-1] gi|300305772|gb|EFJ60292.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 200-1] Length = 571 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|331653024|ref|ZP_08354029.1| electron transport complex protein RnfC [Escherichia coli M718] gi|331049122|gb|EGI21194.1| electron transport complex protein RnfC [Escherichia coli M718] Length = 596 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|312275027|gb|ADQ57822.1| hypothetical protein S500 [Hirudinaria manillensis] Length = 160 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II + G+ G GGA F T +K S P + L++NA E EP D +M + Sbjct: 50 IIQRISDCGIVGLGGATFPTHVKLSPPP---GSKAEVLIINAVECEPYLTSDHILMMEKS 106 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 ++ G I AI + A I Sbjct: 107 EEILVGVAILMKAIEVNRAII 127 >gi|300950446|ref|ZP_07164365.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 116-1] gi|300450223|gb|EFK13843.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 116-1] Length = 496 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 53 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 108 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 109 MQDCAAQVVEGIRI 122 >gi|300988844|ref|ZP_07178839.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 45-1] gi|300407382|gb|EFJ90920.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 45-1] Length = 570 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|300907218|ref|ZP_07124880.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 84-1] gi|300401022|gb|EFJ84560.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 84-1] Length = 573 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|256022710|ref|ZP_05436575.1| electron transport complex protein RnfC [Escherichia sp. 4_1_40B] Length = 597 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|256018178|ref|ZP_05432043.1| electron transport complex protein RnfC [Shigella sp. D9] gi|332279226|ref|ZP_08391639.1| electron transport complex protein rnfC [Shigella sp. D9] gi|332101578|gb|EGJ04924.1| electron transport complex protein rnfC [Shigella sp. D9] Length = 565 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|324014761|gb|EGB83980.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 60-1] Length = 574 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|315291967|gb|EFU51319.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 153-1] Length = 569 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|218282321|ref|ZP_03488611.1| hypothetical protein EUBIFOR_01193 [Eubacterium biforme DSM 3989] gi|218216694|gb|EEC90232.1| hypothetical protein EUBIFOR_01193 [Eubacterium biforme DSM 3989] Length = 436 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 5/103 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ ++ VK +G+ G GGAGF T +K+ + D Y+++NA E EP D + Sbjct: 127 REECVDFVKNAGIVGLGGAGFPTYVKY-----MKPDGVDYVLINAVECEPYITADYRSVM 181 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 + L+ G I A +I ++ E +++A+ + Sbjct: 182 DDAQDLVTGAKIMKKMAEAKTVYICIKESHPDLIEKVKSALQD 224 >gi|293414946|ref|ZP_06657589.1| electron transport complex protein RnfC [Escherichia coli B185] gi|291432594|gb|EFF05573.1| electron transport complex protein RnfC [Escherichia coli B185] Length = 611 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|315126996|ref|YP_004068999.1| electron transport complex protein RnfC [Pseudoalteromonas sp. SM9913] gi|315015510|gb|ADT68848.1| electron transport complex protein RnfC [Pseudoalteromonas sp. SM9913] Length = 679 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +++ + +G+ G GGAGF T +K + +L+VNA E EP D +MR Sbjct: 134 DELVDVIHNAGISGMGGAGFPTYVKADIKQPI-----EFLIVNAVECEPYITADDTLMRE 188 Query: 101 EPHTLIEG 108 +++G Sbjct: 189 HAAEIVKG 196 >gi|331673198|ref|ZP_08373966.1| electron transport complex protein RnfC [Escherichia coli TA280] gi|331069396|gb|EGI40783.1| electron transport complex protein RnfC [Escherichia coli TA280] Length = 608 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|262037146|ref|ZP_06010638.1| electron transport complex protein RnfC [Leptotrichia goodfellowii F0264] gi|261748834|gb|EEY36181.1| electron transport complex protein RnfC [Leptotrichia goodfellowii F0264] Length = 441 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 28/197 (14%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 S++M R +++ E + I++ +K SG+ G GGA F T +K+ KV Sbjct: 106 SENMERRAMESLS---EYTKREILDVIKESGIVGEGGAQFPTYVKYDIGDKVVDT----F 158 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 ++N E EP D IM +G I + I + E L Sbjct: 159 ILNGSECEPYLTADYTIMNEWTEQFFDGIKIVEKLLNPKKTVIGIE----EENRELVERF 214 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 E S K +++I V AY G E L++++ GK+ + K P N G Sbjct: 215 SEV-------SRKKNMTNIEICVL--PTAYPQGSELQLIKTITGKEIK---KGNLPVNYG 262 Query: 201 LYGCPTTVNNVESIAVV 217 + V+NV ++ V Sbjct: 263 V-----VVSNVGTVKSV 274 >gi|307310800|ref|ZP_07590446.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli W] gi|306908978|gb|EFN39474.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli W] Length = 608 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|307243115|ref|ZP_07525289.1| electron transport complex, RnfABCDGE type, C subunit [Peptostreptococcus stomatis DSM 17678] gi|306493475|gb|EFM65454.1| electron transport complex, RnfABCDGE type, C subunit [Peptostreptococcus stomatis DSM 17678] Length = 447 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I + ++ I+ VK +G+ G GGA F +K S P + Y+++N E EP D Sbjct: 116 IADLSKEEIVGIVKEAGIVGMGGATFPNHVKISPPP---DSKAEYVILNGAECEPYLTAD 172 Query: 95 RDIMRHEPHTLIEG 108 +M P ++ G Sbjct: 173 DRLMVENPEDVVYG 186 >gi|331677494|ref|ZP_08378169.1| electron transport complex protein RnfC [Escherichia coli H591] gi|331073954|gb|EGI45274.1| electron transport complex protein RnfC [Escherichia coli H591] Length = 544 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 53 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 108 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 109 MQDCAAQVVEGIRI 122 >gi|323973845|gb|EGB69018.1| electron transporter [Escherichia coli TA007] Length = 623 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|323940294|gb|EGB36486.1| electron transporter [Escherichia coli E482] Length = 631 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|331683136|ref|ZP_08383737.1| electron transport complex protein RnfC [Escherichia coli H299] gi|331079351|gb|EGI50548.1| electron transport complex protein RnfC [Escherichia coli H299] Length = 624 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|331668306|ref|ZP_08369154.1| electron transport complex protein RnfC [Escherichia coli TA271] gi|331063500|gb|EGI35411.1| electron transport complex protein RnfC [Escherichia coli TA271] Length = 620 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|331657598|ref|ZP_08358560.1| electron transport complex protein RnfC [Escherichia coli TA206] gi|331055846|gb|EGI27855.1| electron transport complex protein RnfC [Escherichia coli TA206] Length = 622 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|258627117|ref|ZP_05721913.1| RnfC-related protein [Vibrio mimicus VM603] gi|258580635|gb|EEW05588.1| RnfC-related protein [Vibrio mimicus VM603] Length = 820 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 + +I+G I + I Sbjct: 190 HANEIIQGIEIVEHILKPKLTII 212 >gi|37679374|ref|NP_933983.1| electron transport complex protein RnfC [Vibrio vulnificus YJ016] gi|37198117|dbj|BAC93954.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Vibrio vulnificus YJ016] Length = 885 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D++++ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKKI----QSGLGRTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +++ +++G I + I + ++L++A Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKK 186 + DI++ Y G E L++ L K+ Sbjct: 230 QNRDIVIRVIPTKYPSGGEKQLIKVLTNKE 259 >gi|227885955|ref|ZP_04003760.1| electron transport complex protein RnfC [Escherichia coli 83972] gi|227837047|gb|EEJ47513.1| electron transport complex protein RnfC [Escherichia coli 83972] Length = 616 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|323169935|gb|EFZ55591.1| electron transport complex protein rnfC [Escherichia coli LT-68] Length = 684 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 161 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 162 MQDCAAQIVEGIRI 175 >gi|307138283|ref|ZP_07497639.1| electron transport complex protein RnfC [Escherichia coli H736] gi|331642222|ref|ZP_08343357.1| electron transport complex protein RnfC [Escherichia coli H736] gi|331039020|gb|EGI11240.1| electron transport complex protein RnfC [Escherichia coli H736] Length = 621 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|262171980|ref|ZP_06039658.1| electron transport complex protein RnfC [Vibrio mimicus MB-451] gi|261893056|gb|EEY39042.1| electron transport complex protein RnfC [Vibrio mimicus MB-451] Length = 867 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGAGF T K + R L++NA E EP D +MR + +I Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQHANEII 195 Query: 107 EGCVIASFAIGAHCAFI 123 +G I + I Sbjct: 196 QGIEIVEHILKPKLTII 212 >gi|325299904|ref|YP_004259821.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides salanitronis DSM 18170] gi|324319457|gb|ADY37348.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides salanitronis DSM 18170] Length = 445 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ ++K +G+ G GGA F T +K + P + +++NA E EP D +M Sbjct: 123 EEIVTKIKNAGVVGMGGACFPTHVKLTPPPGC---KAECVIINAVECEPYLTADHRLMLE 179 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 +P ++ G I A + A+I Sbjct: 180 KPDEILVGVSILMKAAKVNQAYI 202 >gi|300821500|ref|ZP_07101647.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 119-7] gi|300526003|gb|EFK47072.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 119-7] Length = 640 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|257065213|ref|YP_003144885.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase [Slackia heliotrinireducens DSM 20476] gi|256792866|gb|ACV23536.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase [Slackia heliotrinireducens DSM 20476] Length = 612 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR+G + +M ++ A + +D + ++++ I+ + CA+G +A + Sbjct: 50 QTCGKCVPCRDGIPQLAALMRSVLNCEADECTLDTMRQLAQMIKDTSDCAIGYEAGKMAL 109 Query: 402 QGL 404 +GL Sbjct: 110 EGL 112 >gi|324119385|gb|EGC13272.1| electron transporter [Escherichia coli E1167] Length = 655 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|333005861|gb|EGK25377.1| electron transport complex protein rnfC [Shigella flexneri K-272] Length = 620 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D + Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 161 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 162 MQDCAAQVVEGIRI 175 >gi|323962199|gb|EGB57793.1| electron transporter [Escherichia coli H489] Length = 659 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|224541300|ref|ZP_03681839.1| hypothetical protein CATMIT_00460 [Catenibacterium mitsuokai DSM 15897] gi|224525737|gb|EEF94842.1| hypothetical protein CATMIT_00460 [Catenibacterium mitsuokai DSM 15897] Length = 402 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 46/263 (17%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 H +N+D + + + I +VK +G+ G GGAGF T +K + ++ Y++VN E Sbjct: 75 AHENNIDTLTFEEK---IEKVKNAGVVGLGGAGFPTHVKLNVKE---PEKIEYVIVNGAE 128 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EP D +M LIEG I +I + ++E++ C Sbjct: 129 CEPYLTSDYRLMLERSKELIEGLKIMLTLYPHAVGYIGIED---NKKEAIHTLEKLC--- 182 Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 ++ I V Y G E L+E+L G++ ++ P +VG Sbjct: 183 ---------EHEERISVKVLKTKYPQGGERMLIEALTGRRLNSKM---LPLDVG-----C 225 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDEL 265 V+NV ++ + ++ S + +++G VN PC VE + F + Sbjct: 226 IVDNVATVLAIRDAIKYDRPLIS----------TVMTLTGEGVNTPCNVEVPVGTDFQFI 275 Query: 266 IEKHCGGIRGGW-DNLLAVIPGG 287 +E RGG +N+ +I GG Sbjct: 276 VES-----RGGLKENVEKIISGG 293 >gi|323937424|gb|EGB33702.1| electron transporter [Escherichia coli E1520] Length = 631 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|225389877|ref|ZP_03759601.1| hypothetical protein CLOSTASPAR_03626 [Clostridium asparagiforme DSM 15981] gi|225044070|gb|EEG54316.1| hypothetical protein CLOSTASPAR_03626 [Clostridium asparagiforme DSM 15981] Length = 441 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 + I + VK +G+ G GGAGF T +K + PK + Y++VN E EP D +M Sbjct: 122 KQEIRDIVKEAGIVGLGGAGFPTHVKLT--PKD-ENAIEYILVNGAECEPYLTSDYRMMI 178 Query: 100 HEPHTLIEG 108 EP ++ G Sbjct: 179 EEPEKIVGG 187 >gi|149196444|ref|ZP_01873499.1| Iron-regulated ABC transporter ATPase subunit SufC [Lentisphaera araneosa HTCC2155] gi|149140705|gb|EDM29103.1| Iron-regulated ABC transporter ATPase subunit SufC [Lentisphaera araneosa HTCC2155] Length = 250 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 H DK + KG D+ +NE + + G GAG ST + K+ + P Y V S Sbjct: 8 HAKVADKTILKGLDFEVNEGEVHAIMGPNGAGKST------LSKIIAGHPDYEVTEGTVS 61 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASF 114 K++D+ EP + V SF Sbjct: 62 YEVNFKEKDLTDMEPEDIAREGVFLSF 88 >gi|260779357|ref|ZP_05888249.1| electron transport complex protein RnfC [Vibrio coralliilyticus ATCC BAA-450] gi|260605521|gb|EEX31816.1| electron transport complex protein RnfC [Vibrio coralliilyticus ATCC BAA-450] Length = 923 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 28/177 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D +I ++ +G+ G GGAGF T K + R L+VNA E EP D +M+ Sbjct: 134 DELIEIIRQAGVSGMGGAGFPTAKKI----QAGLARTEILIVNAAECEPYITADDMLMQE 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 +I+G I + I + + ++L+ A + D Sbjct: 190 HADEVIKGIEIVEHILNPKLTIIGIEDNKPQAIKALEQAAEH----------------KD 233 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 I++ Y G E L++ L K+ PA++GL V NV S+ + Sbjct: 234 IVIRVIPTKYPSGGEKQLIKILTNKEVPANS---IPADIGLL-----VQNVGSLQAI 282 >gi|315286322|gb|EFU45758.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 110-3] Length = 644 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|323952614|gb|EGB48486.1| electron transporter [Escherichia coli H252] Length = 651 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|300819310|ref|ZP_07099509.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 107-1] gi|300528081|gb|EFK49143.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 107-1] Length = 676 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|293446004|ref|ZP_06662426.1| electron transport complex protein RnfC [Escherichia coli B088] gi|291322834|gb|EFE62262.1| electron transport complex protein RnfC [Escherichia coli B088] Length = 662 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|170768759|ref|ZP_02903212.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia albertii TW07627] gi|170122307|gb|EDS91238.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia albertii TW07627] Length = 740 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREALIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|167751857|ref|ZP_02423984.1| hypothetical protein ALIPUT_00099 [Alistipes putredinis DSM 17216] gi|167660098|gb|EDS04228.1| hypothetical protein ALIPUT_00099 [Alistipes putredinis DSM 17216] Length = 449 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I+ +K +G+ G GGA F T +K + + +L++N E EP D +M Sbjct: 125 ILARIKEAGIVGMGGAAFPTQVKLTVP---AGKKVEHLIINGVECEPYLTSDHRVMLERS 181 Query: 103 HTLIEGCVIASFAIGAHCAFI 123 L+ G I A+G A I Sbjct: 182 EELLVGVTILMRALGVSGASI 202 >gi|333018895|gb|EGK38188.1| electron transport complex protein rnfC [Shigella flexneri K-227] Length = 644 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|187777028|ref|ZP_02993501.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC 15579] gi|187773956|gb|EDU37758.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC 15579] Length = 447 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ I+ ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 126 EMTKEEIMKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 182 Query: 97 IMRHEPHTLIEGCVI 111 +M E ++EG I Sbjct: 183 LMLEESDKIVEGLKI 197 >gi|331647118|ref|ZP_08348212.1| electron transport complex protein RnfC [Escherichia coli M605] gi|331043901|gb|EGI16037.1| electron transport complex protein RnfC [Escherichia coli M605] Length = 677 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|261867803|ref|YP_003255725.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413135|gb|ACX82506.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 745 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 ++ L + + +I ++ +G+ G GGA F T K K L++N E EP Sbjct: 125 LEDFLSQTPEQLIEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 TC DR +MR +IEG I + + I V + +SL+ A+ Sbjct: 181 TCDDR-LMRDYADEIIEGVRILRYILRPEKVVIAVEDNKPKAVKSLERAL 229 >gi|313648904|gb|EFS13341.1| electron transport complex protein rnfC [Shigella flexneri 2a str. 2457T] Length = 676 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|153854955|ref|ZP_01996168.1| hypothetical protein DORLON_02174 [Dorea longicatena DSM 13814] gi|149752452|gb|EDM62383.1| hypothetical protein DORLON_02174 [Dorea longicatena DSM 13814] Length = 471 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 17/79 (21%) Query: 47 VKASGLRGRGGAGFSTGMKWSFM----------PKVCSDRPH-------YLVVNADESEP 89 VKA+G+ G GGAGF TG+K + P++ + P Y++VNA E EP Sbjct: 90 VKAAGIVGMGGAGFPTGVKLNINLEETPMGELDPEINPELPKDFKLDCGYILVNAAECEP 149 Query: 90 GTCKDRDIMRHEPHTLIEG 108 G + + + LI G Sbjct: 150 GLEHNTRQIEEQSDKLIRG 168 >gi|323956694|gb|EGB52430.1| electron transporter [Escherichia coli H263] Length = 667 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|6900001|emb|CAB71310.1| electron transfer protein [Clostridium sticklandii] Length = 402 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%) Query: 44 INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103 I ++ +G+ G GGAGF T +K + + Y++ N E EP + +M +P Sbjct: 80 IEAIQEAGIVGSGGAGFPTHVKLNV-----NLEGGYVIANGAECEPVLGHNIKLMEEDPQ 134 Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163 +I G A A+I ++ + R++L+ +L + +L D+++ + Sbjct: 135 LIIRGLKYVKEITNASKAYIAMKA---KHRKALR----------ILKTACELEPDIEVKI 181 Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223 Y G+E A++ + G +P + P AN + NVE++ + + Sbjct: 182 L--PDMYPAGDERAIVRDILGVLLEPG-QLPKAAN-------AVIQNVETLKHIVNAIEL 231 Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH---CGG 272 + TK +++G V + M + E ++K+ CGG Sbjct: 232 RKPYI----------TKDITVAGRVMDATDGKVFMDVPVGESVKKYIDLCGG 273 >gi|146311475|ref|YP_001176549.1| electron transport complex protein RnfC [Enterobacter sp. 638] gi|145318351|gb|ABP60498.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter sp. 638] Length = 673 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 QSREALIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIQTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|332758459|gb|EGJ88780.1| electron transport complex protein rnfC [Shigella flexneri K-671] gi|332767030|gb|EGJ97229.1| electron transport complex, RnfABCDGE type, C subunit [Shigella flexneri 2930-71] Length = 684 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D + Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 161 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 162 MQDCAAQVVEGIRI 175 >gi|161503451|ref|YP_001570563.1| electron transport complex protein RnfC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043392|sp|A9MRW8|RNFC_SALAR RecName: Full=Electron transport complex protein rnfC gi|160864798|gb|ABX21421.1| hypothetical protein SARI_01525 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 673 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGIDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVIASF 114 ++EG I ++ Sbjct: 188 DCAAQIVEGIRILAY 202 >gi|330911436|gb|EGH39946.1| electron transport complex protein RnfC [Escherichia coli AA86] Length = 709 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|323186099|gb|EFZ71455.1| electron transport complex protein rnfC [Escherichia coli 1357] Length = 708 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|293390123|ref|ZP_06634457.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950657|gb|EFE00776.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 790 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 ++ L + + +I ++ +G+ G GGA F T K K L++N E EP Sbjct: 125 LEDFLNQTPEQLIEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 TC DR +MR +IEG I + + I V + +SL+ A+ Sbjct: 181 TCDDR-LMRDYADEIIEGVRILRYILRPEKVVIAVEDNKPKAVKSLERAL 229 >gi|310659538|ref|YP_003937259.1| electron transfer protein [Clostridium sticklandii DSM 519] gi|308826316|emb|CBH22354.1| Electron transfer protein [Clostridium sticklandii] Length = 428 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%) Query: 44 INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103 I ++ +G+ G GGAGF T +K + + Y++ N E EP + +M +P Sbjct: 79 IEAIQEAGIVGSGGAGFPTHVKLNV-----NLEGGYVIANGAECEPVLGHNIKLMEEDPQ 133 Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163 +I G A A+I ++ + R++L+ +L + +L D+++ + Sbjct: 134 LIIRGLKYVKEITNASKAYIAMKA---KHRKALR----------ILKTACELEPDIEVKI 180 Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223 Y G+E A++ + G +P + P AN + NVE++ + + Sbjct: 181 L--PDMYPAGDERAIVRDILGVLLEPG-QLPKAAN-------AVIQNVETLKHIVNAIEL 230 Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH---CGG 272 + TK +++G V + M + E ++K+ CGG Sbjct: 231 RKPYI----------TKDITVAGRVMDATDGKVFMDVPVGESVKKYIDLCGG 272 >gi|333005285|gb|EGK24805.1| electron transport complex protein rnfC [Shigella flexneri VA-6] Length = 708 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|323169187|gb|EFZ54863.1| electron transport complex protein rnfC [Shigella sonnei 53G] Length = 708 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|218554197|ref|YP_002387110.1| electron transport complex protein RnfC [Escherichia coli IAI1] gi|218695192|ref|YP_002402859.1| electron transport complex protein RnfC [Escherichia coli 55989] gi|226735440|sp|B7M0I6|RNFC_ECO8A RecName: Full=Electron transport complex protein rnfC gi|254807930|sp|B7L5I2|RNFC_ECO55 RecName: Full=Electron transport complex protein rnfC gi|218351924|emb|CAU97649.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli 55989] gi|218360965|emb|CAQ98538.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli IAI1] gi|323152867|gb|EFZ39137.1| electron transport complex protein rnfC [Escherichia coli EPECa14] Length = 708 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|91210842|ref|YP_540828.1| electron transport complex protein RnfC [Escherichia coli UTI89] gi|218558500|ref|YP_002391413.1| electron transport complex protein RnfC [Escherichia coli S88] gi|218689576|ref|YP_002397788.1| electron transport complex protein RnfC [Escherichia coli ED1a] gi|123387945|sp|Q1RBG7|RNFC_ECOUT RecName: Full=Electron transport complex protein rnfC gi|226735437|sp|B7M9Y3|RNFC_ECO45 RecName: Full=Electron transport complex protein rnfC gi|254807931|sp|B7MVA7|RNFC_ECO81 RecName: Full=Electron transport complex protein rnfC gi|91072416|gb|ABE07297.1| electron transport complex protein RnfC [Escherichia coli UTI89] gi|218365269|emb|CAR02990.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli S88] gi|218427140|emb|CAR08023.2| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli ED1a] gi|294490842|gb|ADE89598.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli IHE3034] gi|307626885|gb|ADN71189.1| electron transport complex protein RnfC [Escherichia coli UM146] Length = 708 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|253773413|ref|YP_003036244.1| electron transport complex protein RnfC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253324457|gb|ACT29059.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 708 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|27366363|ref|NP_761891.1| electron transport complex protein RnfC [Vibrio vulnificus CMCP6] gi|27362564|gb|AAO11418.1| Electron transport complex protein rnfC [Vibrio vulnificus CMCP6] Length = 919 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D++++ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKKI----QSGLGRTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +++ +++G I + I + ++L++A Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKK 186 + DI++ Y G E L++ L K+ Sbjct: 230 QNRDIVIRVIPTKYPSGGEKQLIKVLTNKE 259 >gi|283833246|ref|ZP_06352987.1| electron transport complex protein RnfC [Citrobacter youngae ATCC 29220] gi|291070882|gb|EFE08991.1| electron transport complex protein RnfC [Citrobacter youngae ATCC 29220] Length = 674 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIARIHQYGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|117623815|ref|YP_852728.1| electron transport complex protein RnfC [Escherichia coli APEC O1] gi|166225090|sp|A1ABH4|RNFC_ECOK1 RecName: Full=Electron transport complex protein rnfC gi|115512939|gb|ABJ01014.1| electron transport complex protein RnfC [Escherichia coli APEC O1] Length = 708 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|332343347|gb|AEE56681.1| electron transport complex RnfC [Escherichia coli UMNK88] Length = 708 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|188495694|ref|ZP_03002964.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 53638] gi|188490893|gb|EDU65996.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 53638] Length = 740 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|325264019|ref|ZP_08130752.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium sp. D5] gi|324031057|gb|EGB92339.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium sp. D5] Length = 439 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E RD +I + +G+ G GGAGF T +K S PK ++ Y++ N E EP D Sbjct: 118 EMTRDEVIGMIGEAGIVGMGGAGFPTKVKLS--PKE-PEKIDYIIANCAECEPYITADYR 174 Query: 97 IMRHEPHTLIEGCVI 111 M L+ G I Sbjct: 175 RMLENTEELVSGMKI 189 >gi|315925132|ref|ZP_07921349.1| pyridine nucleotide-disulfide oxidoreductase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622031|gb|EFV01995.1| pyridine nucleotide-disulfide oxidoreductase [Pseudoramibacter alactolyticus ATCC 23263] Length = 612 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR G + ++ ++ G A + L+ E +++I CA+G AA + Sbjct: 50 QTCGKCVPCRIGLLQLKHLLTEVLDGEATMATLALIEETARSISETADCAIGYEAAHMVW 109 Query: 403 GLIKNFRPLIEERIDQYHRCN 423 ++ R E I + RC+ Sbjct: 110 RCLRECRDDFEAHI-KSGRCH 129 >gi|256003828|ref|ZP_05428815.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 2360] gi|255992166|gb|EEU02261.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 2360] Length = 403 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 34/185 (18%) Query: 44 INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIMRHEP 102 I+ ++ SGL G GGAGF +K S P + L++NA E EP D R+I+ + Sbjct: 87 ISAIRESGLVGLGGAGFPAHVKLSPPP---DKKIDTLIINAAECEPYITSDYREIIENS- 142 Query: 103 HTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 ++ G I +G I + + E I+E + A D Sbjct: 143 WNVVSGINIIMEILGIENVLIGIEDNKPEAIKEMTRVAATDDR----------------- 185 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y G E L+ + G+K P PA+VG+ V NV S++ + Sbjct: 186 -INVIKLKSRYPQGAEKMLIYATTGRKVPPG---KLPADVGV-----IVMNVNSVSFISE 236 Query: 220 ILRRG 224 ++ G Sbjct: 237 YIKTG 241 >gi|215486806|ref|YP_002329237.1| electron transport complex protein RnfC [Escherichia coli O127:H6 str. E2348/69] gi|312966607|ref|ZP_07780827.1| electron transport complex protein rnfC [Escherichia coli 2362-75] gi|254807929|sp|B7URX0|RNFC_ECO27 RecName: Full=Electron transport complex protein rnfC gi|215264878|emb|CAS09264.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O127:H6 str. E2348/69] gi|312288717|gb|EFR16617.1| electron transport complex protein rnfC [Escherichia coli 2362-75] Length = 741 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|325265309|ref|ZP_08132034.1| PduS protein [Clostridium sp. D5] gi|324029488|gb|EGB90778.1| PduS protein [Clostridium sp. D5] Length = 449 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 59/286 (20%), Positives = 104/286 (36%), Gaps = 47/286 (16%) Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + Y +VNA E EP D+ + R LI+G + + + A ++I ++ ++ E + Sbjct: 29 KAEYFIVNAAECEPLIETDKYLCRTFADELIKGVMYIAGHLEAKKSYIALKAKYKAEIAA 88 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L+ A+++ A DI + Y G+E +++ + G+ R Sbjct: 89 LKEAIEKNNA--------------DIEIFEMRTFYPAGDEQIIVQQVTGRTVPER---GI 131 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P VG V+NV ++ V L G K S+ G V P ++ Sbjct: 132 PIEVG-----AVVDNVGTVLAVYRALTDGGKVTD----------KYLSVVGEVKEPIMLK 176 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG-LKEMGSG 314 + + IE A P S + G M G + D + + Sbjct: 177 VPIGTSVRTCIE--------------AAQPVISDYAIILGGPMMGKVFSDDSVIDQQVVT 222 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 T +IV+ + +I+ KH++ C CR T R Sbjct: 223 KTTGNIIVLPKDHYLIRRTQVSIQRIKHQARSACIQCRMCTDLCPR 268 >gi|323247769|gb|EGA31709.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 447 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|289679202|ref|ZP_06500092.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae FF5] Length = 41 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 24/40 (60%) Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 G+ +GT + +D S +++ + + F+ ESCG CTPC Sbjct: 1 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPC 40 >gi|213582925|ref|ZP_03364751.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 456 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 20 REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 75 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 76 DCAAQIVEGIRI 87 >gi|82544003|ref|YP_407950.1| electron transport complex protein RnfC [Shigella boydii Sb227] gi|123741996|sp|Q320Y6|RNFC_SHIBS RecName: Full=Electron transport complex protein rnfC gi|81245414|gb|ABB66122.1| putative membrane protein [Shigella boydii Sb227] gi|320186301|gb|EFW61037.1| Electron transport complex protein RnfC [Shigella flexneri CDC 796-83] Length = 740 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|332096012|gb|EGJ01017.1| electron transport complex protein rnfC [Shigella boydii 3594-74] Length = 716 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 161 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 162 MQDCAAQVVEGIRI 175 >gi|26247876|ref|NP_753916.1| electron transport complex protein RnfC [Escherichia coli CFT073] gi|81748475|sp|Q8FH95|RNFC_ECOL6 RecName: Full=Electron transport complex protein rnfC gi|26108279|gb|AAN80481.1|AE016761_56 Electron transport complex protein rnfC [Escherichia coli CFT073] gi|307553652|gb|ADN46427.1| electron transport complex protein RnfC [Escherichia coli ABU 83972] Length = 742 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|170020019|ref|YP_001724973.1| electron transport complex protein RnfC [Escherichia coli ATCC 8739] gi|312969650|ref|ZP_07783833.1| electron transport complex protein rnfC [Escherichia coli 1827-70] gi|189043391|sp|B1IQC5|RNFC_ECOLC RecName: Full=Electron transport complex protein rnfC gi|169754947|gb|ACA77646.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli ATCC 8739] gi|310337935|gb|EFQ03024.1| electron transport complex protein rnfC [Escherichia coli 1827-70] Length = 740 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|16129587|ref|NP_416146.1| electron transport complex protein required for the reduction of SoxR; predicted membrane-associated NADH oxidoreductase [Escherichia coli str. K-12 substr. MG1655] gi|89108471|ref|AP_002251.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli str. K-12 substr. W3110] gi|170081293|ref|YP_001730613.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|238900845|ref|YP_002926641.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli BW2952] gi|17368316|sp|P77611|RNFC_ECOLI RecName: Full=Electron transport complex protein rnfC gi|226735441|sp|B1XFU1|RNFC_ECODH RecName: Full=Electron transport complex protein rnfC gi|259494049|sp|C4ZY92|RNFC_ECOBW RecName: Full=Electron transport complex protein rnfC gi|1742688|dbj|BAA15384.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli str. K12 substr. W3110] gi|1787916|gb|AAC74701.1| electron transport complex protein required for the reduction of SoxR; predicted membrane-associated NADH oxidoreductase [Escherichia coli str. K-12 substr. MG1655] gi|169889128|gb|ACB02835.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|238861218|gb|ACR63216.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli BW2952] gi|260449247|gb|ACX39669.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli DH1] gi|309701855|emb|CBJ01167.1| electron transport complex protein [Escherichia coli ETEC H10407] gi|315136270|dbj|BAJ43429.1| electron transport complex protein RnfC [Escherichia coli DH1] Length = 740 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|157161091|ref|YP_001458409.1| electron transport complex protein RnfC [Escherichia coli HS] gi|166991047|sp|A8A0H2|RNFC_ECOHS RecName: Full=Electron transport complex protein rnfC gi|157066771|gb|ABV06026.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli HS] Length = 740 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|194436648|ref|ZP_03068749.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 101-1] gi|254161691|ref|YP_003044799.1| electron transport complex protein RnfC [Escherichia coli B str. REL606] gi|194424680|gb|EDX40666.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 101-1] gi|253973592|gb|ACT39263.1| electron transport complex protein RnfC [Escherichia coli B str. REL606] gi|253977787|gb|ACT43457.1| electron transport complex protein RnfC [Escherichia coli BL21(DE3)] gi|313848649|emb|CAQ32106.2| member of SoxR-reducing complex [Escherichia coli BL21(DE3)] Length = 740 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|157145890|ref|YP_001453209.1| electron transport complex protein RnfC [Citrobacter koseri ATCC BAA-895] gi|166225089|sp|A8AH10|RNFC_CITK8 RecName: Full=Electron transport complex protein rnfC gi|157083095|gb|ABV12773.1| hypothetical protein CKO_01641 [Citrobacter koseri ATCC BAA-895] Length = 705 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R W + + + R+ +I + G+ G GGAGF TG+K + D+ L++N Sbjct: 119 IERDGWADYQR---RSREELITRIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVI 111 A E EP D +M+ ++EG I Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199 >gi|333017993|gb|EGK37298.1| electron transport complex protein rnfC [Shigella flexneri K-304] Length = 601 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D + Sbjct: 23 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 78 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 79 MQDCAAQVVEGIRI 92 >gi|281418619|ref|ZP_06249638.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum JW20] gi|281407703|gb|EFB37962.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum JW20] Length = 439 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 34/185 (18%) Query: 44 INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIMRHEP 102 I+ ++ SGL G GGAGF +K S P D L++NA E EP D R+I+ + Sbjct: 123 ISAIRESGLVGLGGAGFPAHVKLSPPPDKKIDT---LIINAAECEPYITSDYREIIENS- 178 Query: 103 HTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 ++ G I +G I + + E I+E + A D Sbjct: 179 WNVVSGINIIMEILGIENVLIGIEDNKPEAIKEMTRVAATDDR----------------- 221 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y G E L+ + G+K P PA+VG+ V NV S++ + Sbjct: 222 -INVIKLKSRYPQGAEKMLIYATTGRKVPPG---KLPADVGV-----IVMNVNSVSFISE 272 Query: 220 ILRRG 224 ++ G Sbjct: 273 YIKTG 277 >gi|315618815|gb|EFU99398.1| electron transport complex protein rnfC [Escherichia coli 3431] Length = 740 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|24113019|ref|NP_707529.1| electron transport complex protein RnfC [Shigella flexneri 2a str. 301] gi|30063144|ref|NP_837315.1| electron transport complex protein RnfC [Shigella flexneri 2a str. 2457T] gi|110805602|ref|YP_689122.1| electron transport complex protein RnfC [Shigella flexneri 5 str. 8401] gi|81724487|sp|Q83RB9|RNFC_SHIFL RecName: Full=Electron transport complex protein rnfC gi|122366544|sp|Q0T4E8|RNFC_SHIF8 RecName: Full=Electron transport complex protein rnfC gi|24051983|gb|AAN43236.1| putative membrane protein [Shigella flexneri 2a str. 301] gi|30041393|gb|AAP17122.1| putative membrane protein [Shigella flexneri 2a str. 2457T] gi|110615150|gb|ABF03817.1| putative membrane protein [Shigella flexneri 5 str. 8401] gi|281601063|gb|ADA74047.1| Electron transport complex protein rnfC [Shigella flexneri 2002017] gi|332757136|gb|EGJ87476.1| electron transport complex protein rnfC [Shigella flexneri 4343-70] gi|332758063|gb|EGJ88388.1| electron transport complex protein rnfC [Shigella flexneri 2747-71] gi|333003991|gb|EGK23526.1| electron transport complex protein rnfC [Shigella flexneri K-218] Length = 740 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|157157957|ref|YP_001462918.1| electron transport complex protein RnfC [Escherichia coli E24377A] gi|166991046|sp|A7ZM89|RNFC_ECO24 RecName: Full=Electron transport complex protein rnfC gi|157079987|gb|ABV19695.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E24377A] Length = 740 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|315060936|gb|ADT75263.1| electron transport complex protein RnfC [Escherichia coli W] gi|323378493|gb|ADX50761.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli KO11] Length = 740 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|191165932|ref|ZP_03027769.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B7A] gi|193064894|ref|ZP_03045970.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E22] gi|260843935|ref|YP_003221713.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli O103:H2 str. 12009] gi|260855454|ref|YP_003229345.1| fused putative 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O26:H11 str. 11368] gi|260868121|ref|YP_003234523.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli O111:H- str. 11128] gi|301303141|ref|ZP_07209267.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 124-1] gi|190904063|gb|EDV63775.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B7A] gi|192927381|gb|EDV81999.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E22] gi|257754103|dbj|BAI25605.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O26:H11 str. 11368] gi|257759082|dbj|BAI30579.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O103:H2 str. 12009] gi|257764477|dbj|BAI35972.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O111:H- str. 11128] gi|300841550|gb|EFK69310.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 124-1] gi|315257571|gb|EFU37539.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 85-1] gi|320197812|gb|EFW72420.1| Electron transport complex protein RnfC [Escherichia coli EC4100B] gi|323163522|gb|EFZ49348.1| electron transport complex protein rnfC [Escherichia coli E128010] gi|323180943|gb|EFZ66481.1| electron transport complex protein rnfC [Escherichia coli 1180] Length = 740 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|110641752|ref|YP_669482.1| electron transport complex protein RnfC [Escherichia coli 536] gi|191173436|ref|ZP_03034964.1| electron transport complex protein RnfC [Escherichia coli F11] gi|123049190|sp|Q0THJ8|RNFC_ECOL5 RecName: Full=Electron transport complex protein rnfC gi|110343344|gb|ABG69581.1| electron transport complex protein RnfC [Escherichia coli 536] gi|190906278|gb|EDV65889.1| electron transport complex protein RnfC [Escherichia coli F11] Length = 774 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|194425849|ref|ZP_03058405.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B171] gi|194415904|gb|EDX32170.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B171] Length = 740 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|324019506|gb|EGB88725.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 117-3] Length = 543 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 99 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 154 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 155 DCAAQVVEGIRI 166 >gi|222033388|emb|CAP76129.1| electron transport complex protein rnfC [Escherichia coli LF82] gi|312946229|gb|ADR27056.1| electron transport complex protein RnfC [Escherichia coli O83:H1 str. NRG 857C] Length = 775 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|74312044|ref|YP_310463.1| electron transport complex protein RnfC [Shigella sonnei Ss046] gi|123759605|sp|Q3Z1Y4|RNFC_SHISS RecName: Full=Electron transport complex protein rnfC gi|73855521|gb|AAZ88228.1| putative membrane protein [Shigella sonnei Ss046] Length = 740 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|125974915|ref|YP_001038825.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum ATCC 27405] gi|125715140|gb|ABN53632.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum ATCC 27405] gi|316939126|gb|ADU73160.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 1313] Length = 439 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 34/185 (18%) Query: 44 INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIMRHEP 102 I+ ++ SGL G GGAGF +K S P D L++NA E EP D R+I+ + Sbjct: 123 ISAIRESGLVGLGGAGFPAHVKLSPPPDKKIDT---LIINAAECEPYITSDYREIIENS- 178 Query: 103 HTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 ++ G I +G I + + E I+E + A D Sbjct: 179 WNVVSGINIIMEILGIENVLIGIEDNKPEAIKEMTRVAATDDR----------------- 221 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y G E L+ + G+K P PA+VG+ V NV S++ + Sbjct: 222 -INVIKLKSRYPQGAEKMLIYATTGRKVPPG---KLPADVGV-----IVMNVNSVSFISE 272 Query: 220 ILRRG 224 ++ G Sbjct: 273 YIKTG 277 >gi|193070267|ref|ZP_03051211.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E110019] gi|192956448|gb|EDV86907.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E110019] Length = 740 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|309793394|ref|ZP_07687821.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 145-7] gi|308122981|gb|EFO60243.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 145-7] Length = 772 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|262402646|ref|ZP_06079207.1| electron transport complex protein RnfC [Vibrio sp. RC586] gi|262351428|gb|EEZ00561.1| electron transport complex protein RnfC [Vibrio sp. RC586] Length = 830 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + ++ ++ +G+ G GGAGF T K + R L++NA E EP D +MR Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189 Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123 +I+G I + I Sbjct: 190 YAQEIIQGIEIVEHILKPKLTII 212 >gi|320195473|gb|EFW70098.1| Electron transport complex protein RnfC [Escherichia coli WV_060327] Length = 740 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|323187054|gb|EFZ72370.1| electron transport complex protein rnfC [Escherichia coli RN587/1] Length = 773 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|289422880|ref|ZP_06424711.1| respiratory-chain NADH dehydrogenase family protein [Peptostreptococcus anaerobius 653-L] gi|289156710|gb|EFD05344.1| respiratory-chain NADH dehydrogenase family protein [Peptostreptococcus anaerobius 653-L] Length = 437 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 30/206 (14%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCK 93 +EKG I VK +G+ G GGAGF +K +D Y++ NA E EP Sbjct: 74 IEKGA-TIAETVKNAGIVGLGGAGFPAHVKLG------TDLGGTGYVLCNAAECEPILSH 126 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE----------C 143 + + + EP L+ G + A A ++ +E ++L+A +D+ Sbjct: 127 NMNQLLLEPEKLLRGMKLCMEATNAAHGVFALKEIHPKEIKALEAIIDDERIRIEAMPNM 186 Query: 144 YASGLLGSNSK--LGYDVDI-IVHHGAGAYICGEET--ALLESLEGKKGQPRLKPPFPAN 198 Y G + + LG ++D + A A + ET A+ ++++ LKP N Sbjct: 187 YPMGEERAVVRECLGIELDTDQLPSAANAVVINSETMCAIADAVD------DLKPLIEKN 240 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRG 224 + + G T N++E VP R G Sbjct: 241 ITVAGYLNTANSLEIFMNVPIGTRVG 266 >gi|261211947|ref|ZP_05926233.1| electron transport complex protein RnfC [Vibrio sp. RC341] gi|260838555|gb|EEX65206.1| electron transport complex protein RnfC [Vibrio sp. RC341] Length = 825 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 ++ +G+ G GGAGF T K + R L++NA E EP D +MR +I Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQYAQEII 195 Query: 107 EGCVIASFAIGAHCAFI 123 +G I + I Sbjct: 196 QGIEIVEHILKPKLTII 212 >gi|315634428|ref|ZP_07889715.1| electron transport complex protein RnfC [Aggregatibacter segnis ATCC 33393] gi|315477018|gb|EFU67763.1| electron transport complex protein RnfC [Aggregatibacter segnis ATCC 33393] Length = 701 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90 ++ + R+ +I ++ +G+ G GGA F T K K L++N E EP Sbjct: 125 IEDFFTQTREQLIEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 TC DR +MR +IEG I + + I + + +L+ A+ Sbjct: 181 TCDDR-LMRDYAGEIIEGVRILRYILRPEKVVIAIEDNKLEAVSALERAL 229 >gi|323224588|gb|EGA08865.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323254810|gb|EGA38608.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 552 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|255691580|ref|ZP_05415255.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides finegoldii DSM 17565] gi|260622789|gb|EEX45660.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides finegoldii DSM 17565] Length = 445 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELSSEEIVKKIAEAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203 >gi|322616074|gb|EFY12990.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322628769|gb|EFY25554.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631479|gb|EFY28237.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638814|gb|EFY35509.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322654536|gb|EFY50857.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322671624|gb|EFY67745.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|323221947|gb|EGA06338.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323234339|gb|EGA18426.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323260352|gb|EGA43970.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 562 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|322646614|gb|EFY43122.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 565 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|322650862|gb|EFY47253.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 559 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|281178701|dbj|BAI55031.1| putative transport protein [Escherichia coli SE15] Length = 806 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|324006984|gb|EGB76203.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 57-2] Length = 808 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D + Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|323217293|gb|EGA02013.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] Length = 579 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|323198190|gb|EFZ83299.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] Length = 557 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|210621817|ref|ZP_03292846.1| hypothetical protein CLOHIR_00791 [Clostridium hiranonis DSM 13275] gi|210154581|gb|EEA85587.1| hypothetical protein CLOHIR_00791 [Clostridium hiranonis DSM 13275] Length = 433 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 23/174 (13%) Query: 8 IFTNLYGLQGKSLSDS--MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 I ++YG+ +S+ D + + DK +E I+ V+ +G+ G GGAGF T +K Sbjct: 45 IHASIYGVV-ESIDDKKITIKANEKQDDKFVELTSTEPIDLVREAGIVGLGGAGFPTHVK 103 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 P ++ L++NA E EP + + +++ + A A I + Sbjct: 104 LG-KP---FEKGGVLLINAAECEPILDHNMRYINENAEYVVKSVKTVMDMVNAEKAIIGI 159 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 + E L+AA+D C +I +H Y GEE AL+ Sbjct: 160 KSLHTEEIAKLEAAID-CD---------------NITIHGLENMYPMGEERALI 197 >gi|323232168|gb|EGA16274.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] Length = 561 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|322658697|gb|EFY54955.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] Length = 570 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|261339612|ref|ZP_05967470.1| electron transport complex protein RnfC [Enterobacter cancerogenus ATCC 35316] gi|288318434|gb|EFC57372.1| electron transport complex protein RnfC [Enterobacter cancerogenus ATCC 35316] Length = 678 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 QSREALIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQVVEGIRI 199 >gi|322622924|gb|EFY19766.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] Length = 586 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|313673826|ref|YP_004051937.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase [Calditerrivibrio nitroreducens DSM 19672] gi|312940582|gb|ADR19774.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Calditerrivibrio nitroreducens DSM 19672] Length = 646 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 321 IVMDRSTDIIKAIWR-LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 +V D+ DI+K + + + CG+C P R GT + + +L + + +DL+ Sbjct: 50 LVFDKEADILKTLADYMFEISSYGCCGRCFPGRTGTRIIAEELMKLREDKSNAAPLDLIK 109 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++ +I C + A P+ I++F I + + +R Sbjct: 110 DLCVSINKSAKCTVAPTAVIPVIKFIEHFSDEIGLNVSKQYR 151 >gi|323205623|gb|EFZ90586.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] Length = 590 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|322620523|gb|EFY17385.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322685564|gb|EFY81560.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] Length = 569 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|251799748|ref|YP_003014479.1| glucose-1,6-bisphosphate synthase [Paenibacillus sp. JDR-2] gi|247547374|gb|ACT04393.1| Glucose-1,6-bisphosphate synthase [Paenibacillus sp. JDR-2] Length = 570 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 41/72 (56%) Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 +F G ++ Y+ G++ R+++++ A++ C A+ S K YDV + ++ G Y+ Sbjct: 402 AFLFGYEESYGYLTGDYARDKDAVVASLLICEAAAYYSSQGKTLYDVLLELYAKHGFYLE 461 Query: 173 GEETALLESLEG 184 G E+ L+ L+G Sbjct: 462 GLESRTLKGLDG 473 >gi|322667964|gb|EFY64124.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|301647804|ref|ZP_07247591.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 146-1] gi|301074064|gb|EFK88870.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 146-1] Length = 665 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D + Sbjct: 23 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 78 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 79 MQDCAAQVVEGIRI 92 >gi|323947999|gb|EGB43992.1| electron transporter [Escherichia coli H120] Length = 643 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|323211028|gb|EFZ95887.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323237790|gb|EGA21849.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323266729|gb|EGA50216.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 595 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|261258339|ref|ZP_05950872.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. FRIK966] Length = 589 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 681 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 ++ L+ + ++ + +G+RG GGA F + +K + + D LVVN E + Sbjct: 304 IEAPLQADPEALLRRIGEAGVRGMGGAAFPSALKLADGARSGVD---TLVVNGVECDTYL 360 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 D ++R +I+G IA+ A GA + V+ Sbjct: 361 TCDETLLRMRAAAIIDGARIAARACGAERILVAVK 395 >gi|238911689|ref|ZP_04655526.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 644 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|16760456|ref|NP_456073.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25330737|pir||AE0692 probable NADH reducing dehydrogenase STY1665 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502752|emb|CAD01910.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi] Length = 673 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|29141784|ref|NP_805126.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213051629|ref|ZP_03344507.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425981|ref|ZP_03358731.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649168|ref|ZP_03379221.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855037|ref|ZP_03383277.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|29137412|gb|AAO68975.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 673 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|237731407|ref|ZP_04561888.1| electron transport complex protein RnfC [Citrobacter sp. 30_2] gi|226906946|gb|EEH92864.1| electron transport complex protein RnfC [Citrobacter sp. 30_2] Length = 564 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIARIHQYGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|320658803|gb|EFX26477.1| electron transport complex protein RnfC [Escherichia coli O55:H7 str. USDA 5905] Length = 631 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|320086067|emb|CBY95841.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 642 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|52424786|ref|YP_087923.1| putative glutamate synthase (NADPH) small subunit [Mannheimia succiniciproducens MBEL55E] gi|52306838|gb|AAU37338.1| GltD protein [Mannheimia succiniciproducens MBEL55E] Length = 612 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 37/74 (50%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ++CG+C PCR+G + ++ ++ G + + E+++ I + CA+G A I Sbjct: 50 QTCGKCVPCRDGIPHLSFLLRDILAGEGDDSTMRQIRELAEMIRDGSDCAIGYQPAIEIL 109 Query: 403 GLIKNFRPLIEERI 416 I+ F+ E I Sbjct: 110 DSIEEFKEEYESHI 123 >gi|53713889|ref|YP_099881.1| electron transport complex protein RnfC [Bacteroides fragilis YCH46] gi|60682097|ref|YP_212241.1| electron transport complex protein [Bacteroides fragilis NCTC 9343] gi|253567119|ref|ZP_04844570.1| electron transport complex protein RnfC [Bacteroides sp. 3_2_5] gi|265764232|ref|ZP_06092800.1| electron transport complex protein RnfC [Bacteroides sp. 2_1_16] gi|52216754|dbj|BAD49347.1| Electron transport complex protein RnfC [Bacteroides fragilis YCH46] gi|60493531|emb|CAH08318.1| electron transport complex protein [Bacteroides fragilis NCTC 9343] gi|251944243|gb|EES84752.1| electron transport complex protein RnfC [Bacteroides sp. 3_2_5] gi|263256840|gb|EEZ28186.1| electron transport complex protein RnfC [Bacteroides sp. 2_1_16] gi|301163567|emb|CBW23118.1| electron transport complex protein [Bacteroides fragilis 638R] Length = 445 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELTSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEVMVGVAILMKAVKVNKAFI 203 >gi|206575962|ref|YP_002238213.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella pneumoniae 342] gi|226735447|sp|B5XWP9|RNFC_KLEP3 RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|206565020|gb|ACI06796.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella pneumoniae 342] Length = 753 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + SD+ L++NA E EP D + Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGSDKIKTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ +++G I Sbjct: 186 MQDCAAQIVDGIRI 199 >gi|260655573|ref|ZP_05861061.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella anthropi E3_33 E1] gi|260630021|gb|EEX48215.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella anthropi E3_33 E1] Length = 439 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 I + +K +G+ G GGAGF T +K + D+ L++NA E EP D ++ +P Sbjct: 123 IRDVIKNTGIVGMGGAGFPTFIKLTPPKDAVVDQ---LIINASECEPYLTCDYRLILEDP 179 Query: 103 HTLIEG 108 +++G Sbjct: 180 QPIMDG 185 >gi|322665219|gb|EFY61407.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|323194067|gb|EFZ79266.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323202876|gb|EFZ87911.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 642 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|227498875|ref|ZP_03929015.1| electron transport complex protein [Acidaminococcus sp. D21] gi|226904327|gb|EEH90245.1| electron transport complex protein [Acidaminococcus sp. D21] Length = 447 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 57/342 (16%) Query: 33 DKILEKGRDWIINEVKASGLR-----GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + I E+ + I +V + LR G GGA F T +K++ PK + +++N E Sbjct: 103 ETIKERSDEEITPDVIRTALREGGSVGLGGATFPTAVKYA-PPKEGARPIDTILLNGIEC 161 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D IM +I+G A GA I +++ Sbjct: 162 EPFITGDHRIMLEWADEMIQGLKYFMMASGAQKGII---------------GIEDNKPDA 206 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + K+ + +I V A Y G E L+ + G+ R PA+VG+ Sbjct: 207 IALVKEKVASEPNIEVCVCAEKYPEGSEKHLIYAATGRTVPDRG---LPADVGV-----I 258 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V+NV + ++++ Y ++ +ISG VN P + + + + Sbjct: 259 VDNVGTAVACYRMVKKNIPLYE----------RVTTISGDGVNKPGNYICRLGTLYSDAV 308 Query: 267 EKHCGGIRGGWDNLLA-VIPGGSSVPCL--PAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 E GG++G ++ + G S P L P + GA++ ++ + + + Sbjct: 309 ELAAGGLKGTPGKFISGGMMMGFSTPSLDYPIAKWSGAVLIFNSESPFAQYVEPSPCVHC 368 Query: 324 DR----------STDIIKAI----WRLSVFYKHESCGQCTPC 351 R T+I++A+ W + + +C +C C Sbjct: 369 ARCVDACPMKLEPTEIVQAVKRQNWEEAERFSCHACVECGSC 410 >gi|150390047|ref|YP_001320096.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus metalliredigens QYMF] gi|149949909|gb|ABR48437.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus metalliredigens QYMF] Length = 442 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 42/222 (18%) Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 G GGA F T +K S P + +++N E EP D IM P ++ G + Sbjct: 136 GMGGATFPTHVKLSPPP---GKKLDTIILNGAECEPYLTADHRIMLESPDEIVYGLKVIM 192 Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173 A+ A A+I + E+++ AV +N K DI V Y G Sbjct: 193 KAVQAEKAYIGIENNKPDAIEAMKKAV----------ANEK-----DIEVVSLETKYPQG 237 Query: 174 EETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 E L+ + R+ P P +VG+ VNNV + A + ++ G Sbjct: 238 AEKQLITACTQ-----RVVPSGGLPMDVGVL-----VNNVATAAQIAKTIKTGMPLIE-- 285 Query: 232 GRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 ++ ++SG + P + + ++IE CGG Sbjct: 286 --------RITTVSGKAIKTPKNLLIKVGTPMKDIIE-QCGG 318 >gi|332097845|gb|EGJ02818.1| electron transport complex protein rnfC [Shigella dysenteriae 155-74] Length = 708 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|262044609|ref|ZP_06017664.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038010|gb|EEW39226.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 582 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQIVEGIRI 199 >gi|323268765|gb|EGA52224.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 655 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|322641119|gb|EFY37762.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] Length = 644 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|299146146|ref|ZP_07039214.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides sp. 3_1_23] gi|298516637|gb|EFI40518.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides sp. 3_1_23] Length = 445 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203 >gi|320653114|gb|EFX21308.1| electron transport complex protein RnfC [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 677 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|205352830|ref|YP_002226631.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226735451|sp|B5RAK2|RNFC_SALG2 RecName: Full=Electron transport complex protein rnfC gi|205272611|emb|CAR37520.1| putative electron transport complex protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627901|gb|EGE34244.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 673 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|329898085|ref|ZP_08272294.1| Electron transport complex protein RnfC [gamma proteobacterium IMCC3088] gi|328920957|gb|EGG28382.1| Electron transport complex protein RnfC [gamma proteobacterium IMCC3088] Length = 574 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R ++ ++ G+ G GGAGF + K + SD L++N E EP D +MR Sbjct: 124 RTKLLGLIRDHGIAGLGGAGFPSAYKLN------SDHIDTLIINGVECEPYITADDRLMR 177 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 L +G I GA I + E++++A + Sbjct: 178 ERSDLLEQGINILQHITGAQRVLIGIEDNKPEATEAVRSACE 219 >gi|320181352|gb|EFW56271.1| Electron transport complex protein RnfC [Shigella boydii ATCC 9905] Length = 708 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|317488630|ref|ZP_07947173.1| hypothetical protein HMPREF1023_00871 [Eggerthella sp. 1_3_56FAA] gi|316912282|gb|EFV33848.1| hypothetical protein HMPREF1023_00871 [Eggerthella sp. 1_3_56FAA] Length = 617 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR+G + +++R+V A + ++ L +++ I + CA+G +AA + Sbjct: 55 QTCGKCVPCRDGIPQLAAMLKRVVDCDADEGVLEGLRALAEMIRDTSDCAIGYEAARSVL 114 Query: 402 QGL 404 +GL Sbjct: 115 EGL 117 >gi|260174483|ref|ZP_05760895.1| Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein rnfC [Bacteroides sp. D2] gi|315922750|ref|ZP_07918990.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. D2] gi|313696625|gb|EFS33460.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. D2] Length = 445 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203 >gi|237714547|ref|ZP_04545028.1| Na+ transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. D1] gi|262406413|ref|ZP_06082962.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 2_1_22] gi|293370174|ref|ZP_06616734.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides ovatus SD CMC 3f] gi|294643291|ref|ZP_06721117.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides ovatus SD CC 2a] gi|294806485|ref|ZP_06765326.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides xylanisolvens SD CC 1b] gi|298481059|ref|ZP_06999253.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides sp. D22] gi|229445316|gb|EEO51107.1| Na+ transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. D1] gi|262355116|gb|EEZ04207.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 2_1_22] gi|292634671|gb|EFF53200.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides ovatus SD CMC 3f] gi|292641414|gb|EFF59606.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides ovatus SD CC 2a] gi|294446348|gb|EFG14974.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides xylanisolvens SD CC 1b] gi|295083950|emb|CBK65473.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides xylanisolvens XB1A] gi|298272633|gb|EFI14200.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides sp. D22] Length = 445 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203 >gi|207857039|ref|YP_002243690.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226735450|sp|B5QV02|RNFC_SALEP RecName: Full=Electron transport complex protein rnfC gi|206708842|emb|CAR33172.1| Electron transport complex protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 704 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|323242646|gb|EGA26667.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 673 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|298385331|ref|ZP_06994889.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides sp. 1_1_14] gi|298261472|gb|EFI04338.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides sp. 1_1_14] Length = 445 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEVMVGVSILMKAVKVNKAFI 203 >gi|119473030|ref|ZP_01614852.1| electron transport complex protein RnfC [Alteromonadales bacterium TW-7] gi|119444608|gb|EAW25920.1| electron transport complex protein RnfC [Alteromonadales bacterium TW-7] Length = 780 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +++ + +G+ G GGAGF T +K K+ + +VNA E EP D +MR Sbjct: 136 LVDIIHQAGISGMGGAGFPTYIKADTKQKI-----DFFIVNAVECEPYITADDTLMREHA 190 Query: 103 HTLIEG 108 +I+G Sbjct: 191 AEIIQG 196 >gi|111075057|gb|ABH04901.1| ethanolamine utilization Fe-S center protein eut [Heliobacillus mobilis] Length = 444 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 73/318 (22%), Positives = 130/318 (40%), Gaps = 62/318 (19%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ I+ VK +G+ G GGAGF T +K + + ++ N E EP + +M Sbjct: 2 REKIVKAVKEAGVVGAGGAGFPTHIKMNASADI-------IIANGAECEPLLRSHQHLMA 54 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 E ++ G + A GA ++I ++ ++ E+L+ +++ +A G V Sbjct: 55 AESDRVVLGLIAVMLATGAQKSYIGLKKKYSVAIEALEQSIER-HAKG----------RV 103 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 ++ + Y G+E L+ + GK P P V + T VN +++ VP Sbjct: 104 ELFIL--PDFYPAGDEQVLVYEVTGKI-IPEGGIPLHVGVVVINVETLVNITKALDGVPV 160 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 + TK +++G V P T++ + I LIE G I + Sbjct: 161 M------------------TKYVTVTGAVRQPVTLKVPIGIPIRLLIEAAGGAIVNDY-- 200 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII--KAIWRLS 337 A+I GG M G I++ D +G +IV+ + +I K + + Sbjct: 201 --ALIDGGP---------MMGRIVEVDSPVTKTTG----GIIVLPKDHSLIAGKTLPWSA 245 Query: 338 VFYKHES----CGQCTPC 351 + + +S C CT C Sbjct: 246 IANRSKSVCCACRACTDC 263 >gi|29346028|ref|NP_809531.1| Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfC [Bacteroides thetaiotaomicron VPI-5482] gi|29337922|gb|AAO75725.1| Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC [Bacteroides thetaiotaomicron VPI-5482] Length = 445 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEVMVGVSILMKAVKVNKAFI 203 >gi|168819208|ref|ZP_02831208.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343902|gb|EDZ30666.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 704 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|322680007|gb|EFY76046.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] Length = 673 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|224584034|ref|YP_002637832.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254807932|sp|C0Q508|RNFC_SALPC RecName: Full=Electron transport complex protein rnfC gi|224468561|gb|ACN46391.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 704 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|332140732|ref|YP_004426470.1| electron transport complex protein RnfC [Alteromonas macleodii str. 'Deep ecotype'] gi|327550754|gb|AEA97472.1| electron transport complex protein RnfC [Alteromonas macleodii str. 'Deep ecotype'] Length = 852 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + +I + +G+ G GGAGF T +K S V +L++N E EP D +MR Sbjct: 138 NELIEAICQAGISGMGGAGFPTHIKTSTSKPV-----EFLILNGIECEPYITSDDRLMRE 192 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 + +G I + IG + V E+L A Sbjct: 193 HAWQIRQGLDILTHLIGPKAIIVAVEDNKPEAFEALSIA 231 >gi|325831614|ref|ZP_08164831.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp. HGA1] gi|325486485|gb|EGC88934.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp. HGA1] Length = 612 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR+G + +++R+V A + ++ L +++ I + CA+G +AA + Sbjct: 50 QTCGKCVPCRDGIPQLAAMLKRVVDCDADEGVLEGLRALAEMIRDTSDCAIGYEAARSVL 109 Query: 402 QGL 404 +GL Sbjct: 110 EGL 112 >gi|284047498|ref|YP_003397837.1| electron transport complex, RnfABCDGE type, C subunit [Acidaminococcus fermentans DSM 20731] gi|283951719|gb|ADB46522.1| electron transport complex, RnfABCDGE type, C subunit [Acidaminococcus fermentans DSM 20731] Length = 455 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 35/243 (14%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D I ++ G+ G GGA F T +K++ PK +++N E EP D + Sbjct: 124 DLIRQVLREKGIAGMGGATFPTAVKYA-PPKEGHCPIDTILLNGIECEPFVTADHRTLLE 182 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 +I+G A GA I + E +Q K+ + + Sbjct: 183 YADEIIQGLKYFMLASGAAKGIIGIEDNKPDAIELMQ---------------KKVAGEAN 227 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I V Y G E L+ + G+ R PA+VG+ V+NV + Sbjct: 228 IEVCVCKEKYPQGSEKHLIYAATGRTVPDR---GLPADVGV-----IVDNVGTAVAACRA 279 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 ++ Y ++ +ISG VN P + F + +EK GG++G Sbjct: 280 VKNNIPLYE----------RVVTISGDGVNKPGNYIVRLGTLFSDAVEKAAGGLKGDPGK 329 Query: 280 LLA 282 ++A Sbjct: 330 IVA 332 >gi|208816704|ref|ZP_03257824.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4045] gi|208731047|gb|EDZ79736.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4045] Length = 708 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|198244954|ref|YP_002215678.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226735449|sp|B5FIE7|RNFC_SALDC RecName: Full=Electron transport complex protein rnfC gi|197939470|gb|ACH76803.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623424|gb|EGE29769.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 704 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|194431936|ref|ZP_03064226.1| electron transport complex, RnfABCDGE type, C subunit [Shigella dysenteriae 1012] gi|194419844|gb|EDX35923.1| electron transport complex, RnfABCDGE type, C subunit [Shigella dysenteriae 1012] Length = 740 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|253568564|ref|ZP_04845975.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 1_1_6] gi|251842637|gb|EES70717.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 1_1_6] Length = 445 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+ ++ +G+ G GGA F T +K P S + +++NA E EP D Sbjct: 120 ELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFI 123 +M ++ G I A+ + AFI Sbjct: 177 LMLEHAEEVMVGVSILMKAVKVNKAFI 203 >gi|51246885|ref|YP_066769.1| propanediol utilization protein (PduS) [Desulfotalea psychrophila LSv54] gi|50877922|emb|CAG37762.1| related to propanediol utilization protein (PduS) [Desulfotalea psychrophila LSv54] Length = 447 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 47/235 (20%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 +D ++ + +G+ G GGAGF +K+ + ++ N E EP D+ IMR Sbjct: 5 KDSLLRSILDAGIVGEGGAGFPAHVKY-------DTQVDTVIANGCECEPLLHTDQHIMR 57 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 ++ GA I ++ ++ + + +A + G+ +L + Sbjct: 58 TRAADIVVAMQAIVSVTGATRGVIGIKRKYTE--------IAKIFADCIEGTGLEL-VQL 108 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVV 217 D Y G+E L+ + GK PP P +VG V NV ++A V Sbjct: 109 D-------NFYPAGDEQTLVYEVTGKT-----IPPLGLPKDVG-----AVVANVGTLAGV 151 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++ + K+ +++G+V P + + E + HCGG Sbjct: 152 ADAMKGTPVTH-----------KIVTVTGNVGSPAVIRVPLGTKLSECL-AHCGG 194 >gi|15802043|ref|NP_288065.1| electron transport complex protein RnfC [Escherichia coli O157:H7 EDL933] gi|17368144|sp|P58324|RNFC_ECO57 RecName: Full=Electron transport complex protein rnfC gi|12515618|gb|AAG56618.1|AE005386_9 putative membrane protein [Escherichia coli O157:H7 str. EDL933] Length = 740 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|324113403|gb|EGC07378.1| electron transporter [Escherichia fergusonii B253] Length = 627 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIARIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|161614124|ref|YP_001588089.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189043393|sp|A9N025|RNFC_SALPB RecName: Full=Electron transport complex protein rnfC gi|161363488|gb|ABX67256.1| hypothetical protein SPAB_01863 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 735 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|197250222|ref|YP_002146588.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226735448|sp|B5F6J0|RNFC_SALA4 RecName: Full=Electron transport complex protein rnfC gi|197213925|gb|ACH51322.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 735 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|168229832|ref|ZP_02654890.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470158|ref|ZP_03076142.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456522|gb|EDX45361.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335440|gb|EDZ22204.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 735 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|209918942|ref|YP_002293026.1| electron transport complex protein RnfC [Escherichia coli SE11] gi|226735443|sp|B6IB67|RNFC_ECOSE RecName: Full=Electron transport complex protein rnfC gi|209912201|dbj|BAG77275.1| putative transport protein [Escherichia coli SE11] Length = 740 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|62180045|ref|YP_216462.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75483500|sp|Q57PI0|RNFC_SALCH RecName: Full=Electron transport complex protein rnfC gi|62127678|gb|AAX65381.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714515|gb|EFZ06086.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 704 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|332091211|gb|EGI96300.1| electron transport complex protein rnfC [Shigella boydii 5216-82] Length = 740 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|168240973|ref|ZP_02665905.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448184|ref|YP_002045495.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226735452|sp|B4THD4|RNFC_SALHS RecName: Full=Electron transport complex protein rnfC gi|194406488|gb|ACF66707.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339389|gb|EDZ26153.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 735 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|168463131|ref|ZP_02697062.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633861|gb|EDX52213.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 735 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|168264620|ref|ZP_02686593.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200390674|ref|ZP_03217285.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603119|gb|EDZ01665.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205346950|gb|EDZ33581.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 735 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|56413574|ref|YP_150649.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362498|ref|YP_002142135.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360680|sp|Q5PIB9|RNFC_SALPA RecName: Full=Electron transport complex protein rnfC gi|226735454|sp|B5BKB2|RNFC_SALPK RecName: Full=Electron transport complex protein rnfC gi|56127831|gb|AAV77337.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093975|emb|CAR59471.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 735 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|255281825|ref|ZP_05346380.1| PduS protein [Bryantella formatexigens DSM 14469] gi|255267498|gb|EET60703.1| PduS protein [Bryantella formatexigens DSM 14469] Length = 449 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 28/160 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I VKA+G+ G GGAGF T +K + + Y +VNA E EP D+ + R Sbjct: 3 LIETVKAAGVVGAGGAGFPTHVKLN-------TKVEYFIVNAAECEPLIETDKYLCRTWA 55 Query: 103 HTLIEGC-VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 ++ VIA F +GA I ++ ++ RE +L+ AV+ C G DV+I Sbjct: 56 ERIVRTIPVIADF-LGASKKVIALKAKYEREIAALKQAVETC------------GSDVEI 102 Query: 162 IVHHGAGA-YICGEETALLESLEGKKGQPRLKPPFPANVG 200 G G Y G+E L++ + G+ R P++VG Sbjct: 103 F---GLGYFYPAGDEQTLIQQVTGRSVPER---GLPSDVG 136 >gi|167551572|ref|ZP_02345326.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323654|gb|EDZ11493.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 735 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|16764805|ref|NP_460420.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994288|ref|ZP_02575380.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|24638187|sp|Q8ZPM2|RNFC_SALTY RecName: Full=Electron transport complex protein rnfC gi|16419978|gb|AAL20379.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327844|gb|EDZ14608.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246661|emb|CBG24471.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993347|gb|ACY88232.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157990|emb|CBW17485.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912440|dbj|BAJ36414.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224076|gb|EFX49139.1| Electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129727|gb|ADX17157.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988342|gb|AEF07325.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 735 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|194443713|ref|YP_002040706.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226735453|sp|B4T594|RNFC_SALNS RecName: Full=Electron transport complex protein rnfC gi|194402376|gb|ACF62598.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 735 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|168750557|ref|ZP_02775579.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4113] gi|168757455|ref|ZP_02782462.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4401] gi|168771171|ref|ZP_02796178.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4486] gi|168775859|ref|ZP_02800866.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4196] gi|168783452|ref|ZP_02808459.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4076] gi|168789466|ref|ZP_02814473.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC869] gi|168800889|ref|ZP_02825896.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC508] gi|195939018|ref|ZP_03084400.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4024] gi|208810265|ref|ZP_03252141.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4206] gi|208821817|ref|ZP_03262137.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4042] gi|209399637|ref|YP_002270699.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4115] gi|254793246|ref|YP_003078083.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14359] gi|261227926|ref|ZP_05942207.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. FRIK2000] gi|226735438|sp|B5Z463|RNFC_ECO5E RecName: Full=Electron transport complex protein rnfC gi|187768715|gb|EDU32559.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4196] gi|188015238|gb|EDU53360.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4113] gi|188999240|gb|EDU68226.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4076] gi|189355522|gb|EDU73941.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4401] gi|189359999|gb|EDU78418.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4486] gi|189370921|gb|EDU89337.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC869] gi|189376869|gb|EDU95285.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC508] gi|208724781|gb|EDZ74488.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4206] gi|208741940|gb|EDZ89622.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4042] gi|209161037|gb|ACI38470.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4115] gi|254592646|gb|ACT72007.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. TW14359] gi|326343546|gb|EGD67308.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. 1125] Length = 772 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|204927691|ref|ZP_03218892.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323033|gb|EDZ08229.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 729 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|197265683|ref|ZP_03165757.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243938|gb|EDY26558.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 735 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|15831592|ref|NP_310365.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. Sakai] gi|168763667|ref|ZP_02788674.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4501] gi|217328656|ref|ZP_03444737.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14588] gi|13361805|dbj|BAB35761.1| putative membrane protein [Escherichia coli O157:H7 str. Sakai] gi|189366209|gb|EDU84625.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4501] gi|217318003|gb|EEC26430.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14588] gi|320188315|gb|EFW62977.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC1212] gi|326341995|gb|EGD65776.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. 1044] Length = 772 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|148977610|ref|ZP_01814186.1| electron transport complex protein RnfC [Vibrionales bacterium SWAT-3] gi|145963125|gb|EDK28393.1| electron transport complex protein RnfC [Vibrionales bacterium SWAT-3] Length = 964 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 20/155 (12%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 V+ K D +++ ++ +G+ G GGAGF T K + R L+VNA E EP Sbjct: 125 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 180 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +++ +++G I + I + ++ AA+ + Sbjct: 181 TSDDKLLQEHAEEVLKGIEIVEHILQPKLTVIGI-------EDNKPAAIKAVEVA----- 228 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 D DI++ Y G E L++ L K+ Sbjct: 229 ----AKDKDIVIRVIPTKYPSGGEKQLIKILTNKE 259 >gi|322677330|gb|EFY73394.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] Length = 735 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|84393396|ref|ZP_00992155.1| electron transport complex protein RnfC [Vibrio splendidus 12B01] gi|84376005|gb|EAP92894.1| electron transport complex protein RnfC [Vibrio splendidus 12B01] Length = 967 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 V+ K D +++ ++ +G+ G GGAGF T K + R L+VNA E EP Sbjct: 125 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 180 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +++ +++G + + I + ++L+ A Sbjct: 181 TSDDKLLQEHAEEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA------------ 228 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 D DI++ Y G E L++ L K+ Sbjct: 229 ----AKDKDIVIRVIPTKYPSGGEKQLIKILTNKE 259 >gi|257791994|ref|YP_003182600.1| putative glutamate synthase (NADPH) small subunit [Eggerthella lenta DSM 2243] gi|257475891|gb|ACV56211.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Eggerthella lenta DSM 2243] Length = 617 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401 ++CG+C PCR+G + +++R+V A + ++ L +++ I + CA+G +AA + Sbjct: 55 QTCGKCVPCRDGIPQLAAMLKRVVDCEADEGVLEGLRALAEMIRDASDCAIGYEAARSVL 114 Query: 402 QGL 404 +GL Sbjct: 115 EGL 117 >gi|291282761|ref|YP_003499579.1| Electron transport complex protein RnfC [Escherichia coli O55:H7 str. CB9615] gi|290762634|gb|ADD56595.1| Electron transport complex protein RnfC [Escherichia coli O55:H7 str. CB9615] gi|320647300|gb|EFX16108.1| electron transport complex protein RnfC [Escherichia coli O157:H- str. 493-89] gi|320652594|gb|EFX20863.1| electron transport complex protein RnfC [Escherichia coli O157:H- str. H 2687] gi|320668653|gb|EFX35458.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. LSU-61] Length = 772 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|271964835|ref|YP_003339031.1| hypothetical protein Sros_3349 [Streptosporangium roseum DSM 43021] gi|270508010|gb|ACZ86288.1| hypothetical protein Sros_3349 [Streptosporangium roseum DSM 43021] Length = 210 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 L+VIPG P ++ GA DYD LK + + G A ++D + D++ A W ++V Sbjct: 64 LSVIPGIRVEAVWPTREIPGAAPDYDLLKHVAADPGRAFATLVDAAPDLVSAAWAVAV 121 >gi|168235530|ref|ZP_02660588.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734341|ref|YP_002114470.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226735455|sp|B4TV17|RNFC_SALSV RecName: Full=Electron transport complex protein rnfC gi|194709843|gb|ACF89064.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291094|gb|EDY30447.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 732 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQIVEGIRI 199 >gi|156934161|ref|YP_001438077.1| electron transport complex protein RnfC [Cronobacter sakazakii ATCC BAA-894] gi|166225091|sp|A7MMK9|RNFC_ENTS8 RecName: Full=Electron transport complex protein rnfC gi|156532415|gb|ABU77241.1| hypothetical protein ESA_01988 [Cronobacter sakazakii ATCC BAA-894] Length = 776 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 RSREALIERIHQFGVAGLGGAGFPTGTKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ +I+G I Sbjct: 186 MQDCAAQIIDGVRI 199 >gi|82777103|ref|YP_403452.1| electron transport complex protein RnfC [Shigella dysenteriae Sd197] gi|309788404|ref|ZP_07683008.1| electron transport complex protein rnfC [Shigella dysenteriae 1617] gi|123742129|sp|Q32FE4|RNFC_SHIDS RecName: Full=Electron transport complex protein rnfC gi|81241251|gb|ABB61961.1| putative membrane protein [Shigella dysenteriae Sd197] gi|308923786|gb|EFP69289.1| electron transport complex protein rnfC [Shigella dysenteriae 1617] Length = 772 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K D+ L++NA E EP D +M+ Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|160902086|ref|YP_001567667.1| electron transport complex, RnfABCDGE type, C subunit [Petrotoga mobilis SJ95] gi|160359730|gb|ABX31344.1| electron transport complex, RnfABCDGE type, C subunit [Petrotoga mobilis SJ95] Length = 440 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 H +N K ++ +IN VK +G+ G GGA F + +K S + YL++N E Sbjct: 113 HDENFKKF---SKEELINIVKKAGIVGLGGAMFPSHVKLSIP---AGKKVDYLIINGAEC 166 Query: 88 EPGTCKDRDIMR 99 EP D +MR Sbjct: 167 EPYITVDDMMMR 178 >gi|325497183|gb|EGC95042.1| electron transport complex protein RnfC [Escherichia fergusonii ECD227] Length = 726 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIARIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|325261657|ref|ZP_08128395.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5] gi|324033111|gb|EGB94388.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5] Length = 400 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 35/69 (50%) Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 + +SCG+C CREG + + + +G + ID+ E+ + +E T C +G +A Sbjct: 234 RKQSCGRCVFCREGLLQLQYMNNEIKEGRGKPDYIDMTKEIGEAMEFSTPCTMGQVSAKI 293 Query: 401 IQGLIKNFR 409 + ++ F Sbjct: 294 VLSAVELFE 302 >gi|218548775|ref|YP_002382566.1| electron transport complex protein RnfC [Escherichia fergusonii ATCC 35469] gi|226735446|sp|B7LQP1|RNFC_ESCF3 RecName: Full=Electron transport complex protein rnfC gi|218356316|emb|CAQ88934.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia fergusonii ATCC 35469] Length = 726 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG+K + D+ L++NA E EP D +M+ Sbjct: 132 REELIARIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|225017719|ref|ZP_03706911.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum DSM 5476] gi|224949512|gb|EEG30721.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum DSM 5476] Length = 436 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 91/245 (37%), Gaps = 42/245 (17%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ + V GL G GGAGF T K SF V D L++N E EP D M Sbjct: 121 KEEFLEAVYEQGLVGLGGAGFPTHTKLSFGEDVKVD---ILIINGAECEPYITSDNREMV 177 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 ++ G +G A I + ++E+L LL ++ + Sbjct: 178 ENADDIVYGIEQVQKFLGIERALIGIED---NKQEAL----------SLLAQKTESSKGI 224 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKP--PFPANVGLYGCPTTVNNVESIAVV 217 +++ Y G E L+ S G R+ P PA VG+ V NV SI+ Sbjct: 225 EVVSLK--SRYPQGAEKVLIYSTTG-----RVVPEGAIPAEVGV-----VVMNVTSISKF 272 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 LR G + K ++ G + P V + ++I+ CGG + Sbjct: 273 GRYLRTGMPLTA----------KRLTVDGDCITNPQNVRALIGTPVQDVID-FCGGFKKT 321 Query: 277 WDNLL 281 +L Sbjct: 322 PKKIL 326 >gi|152970518|ref|YP_001335627.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955367|gb|ABR77397.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 715 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQIVEGIRI 199 >gi|260597797|ref|YP_003210368.1| electron transport complex protein RnfC [Cronobacter turicensis z3032] gi|260216974|emb|CBA30618.1| Electron transport complex protein rnfC [Cronobacter turicensis z3032] Length = 849 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 RSREALIERIHQFGVAGLGGAGFPTGTKL----QGGGDKIETLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ +I+G I Sbjct: 186 MQDCAAQIIDGVRI 199 >gi|153814812|ref|ZP_01967480.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756] gi|317500331|ref|ZP_07958556.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089660|ref|ZP_08338559.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847843|gb|EDK24761.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756] gi|316898272|gb|EFV20318.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|330405028|gb|EGG84566.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium 3_1_46FAA] Length = 439 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E R+ II + +G+ G GGAGF T +K S PK ++ Y++ N E EP D Sbjct: 118 EMTREEIIERIGEAGIVGMGGAGFPTRVKLS--PKE-PEKIEYIIANCAECEPYITADYR 174 Query: 97 IMRHEPHTLIEG 108 M L+ G Sbjct: 175 RMLENTGQLVNG 186 >gi|320537373|ref|ZP_08037328.1| electron transport complex, RnfABCDGE type, C subunit [Treponema phagedenis F0421] gi|320145838|gb|EFW37499.1| electron transport complex, RnfABCDGE type, C subunit [Treponema phagedenis F0421] Length = 473 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 9/147 (6%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 ++ I ++ G+ G GGA F T +K S P D Y++ N E EP D M Sbjct: 120 KEEAIARIRDCGICGMGGAAFPTHIKLSPPPNTKID---YVLANGAECEPYLTTDAATMY 176 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 H +++G I + A I + L+ A+ + L Sbjct: 177 HSADDIVDGLSIVMHILSASKGIIVLEDNKTDLVPFLEKALAK------LKDRPDTSGSF 230 Query: 160 DIIVHHGAGAYICGEETALLESLEGKK 186 DI + Y G E L+E G++ Sbjct: 231 DISIQLCKTKYPQGGEKNLVEVATGRQ 257 >gi|238895009|ref|YP_002919743.1| electron transport complex protein RnfC [Klebsiella pneumoniae NTUH-K2044] gi|238547325|dbj|BAH63676.1| electron transport complex protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 753 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ ++EG I Sbjct: 186 MQDCAAQIVEGIRI 199 >gi|188587192|ref|YP_001918737.1| electron transport complex, RnfABCDGE type, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351879|gb|ACB86149.1| electron transport complex, RnfABCDGE type, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 440 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIMRHEPHTL 105 +K SG+ G GGA F T + V +P YL++N E EP D M P L Sbjct: 128 LKDSGIAGMGGAAFPTYVN------VNQSQPIEYLLLNGAECEPYLTCDHRQMIEMPEKL 181 Query: 106 IEGCVIASFAIGAHCAFI 123 I+G I IGA +I Sbjct: 182 IKGAEILMRIIGAKKCYI 199 >gi|86147961|ref|ZP_01066265.1| electron transport complex protein RnfC [Vibrio sp. MED222] gi|85834286|gb|EAQ52440.1| electron transport complex protein RnfC [Vibrio sp. MED222] Length = 902 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 V+ K D +++ ++ +G+ G GGAGF T K + R L+VNA E EP Sbjct: 125 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 180 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +++ +++G + + I + ++L+ A Sbjct: 181 TSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA------------ 228 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 D DI++ Y G E L++ L K+ Sbjct: 229 ----ARDKDIVIRVIPTKYPSGGEKQLIKILTNKE 259 >gi|89073352|ref|ZP_01159876.1| electron transport complex protein RnfC [Photobacterium sp. SKA34] gi|89050839|gb|EAR56313.1| electron transport complex protein RnfC [Photobacterium sp. SKA34] Length = 762 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWS-FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 +I ++ SG+ G GGAGF T K + V L++NA E EP D +MR Sbjct: 136 LIETIRLSGIAGLGGAGFPTARKLQGGLGNV-----DILIINAAECEPYITADDRLMRDY 190 Query: 102 PHTLIEGCVIASFAIGAHCAFI 123 +IEG I I I Sbjct: 191 AEEVIEGVRILRHIISPKLTII 212 >gi|289825954|ref|ZP_06545113.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 442 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VNA E EP D+ +M + L+ G A A GA I ++ ++ R ++L Sbjct: 38 FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 S LL + +L D+ Y G+E + G++ P PA+V Sbjct: 95 ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G+ VNNV+ T+L + F + +++G V P TV + Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182 Query: 260 ITFDELI 266 ++ E++ Sbjct: 183 MSLHEVL 189 >gi|16760985|ref|NP_456602.1| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141319|ref|NP_804661.1| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052538|ref|ZP_03345416.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418914|ref|ZP_03351980.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425584|ref|ZP_03358334.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649054|ref|ZP_03379107.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850296|ref|ZP_03381194.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25513185|pir||AH0761 probable ferredoxin pduS [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503283|emb|CAD02414.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi] gi|29136946|gb|AAO68510.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 442 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VNA E EP D+ +M + L+ G A A GA I ++ ++ R ++L Sbjct: 38 FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 S LL + +L D+ Y G+E + G++ P PA+V Sbjct: 95 ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G+ VNNV+ T+L + F + +++G V P TV + Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182 Query: 260 ITFDELI 266 ++ E++ Sbjct: 183 MSLHEVL 189 >gi|153938051|ref|YP_001391784.1| putative electron transport protein [Clostridium botulinum F str. Langeland] gi|152933947|gb|ABS39445.1| putative electron transport protein [Clostridium botulinum F str. Langeland] Length = 436 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 30/203 (14%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ N E EP + + + P +I+G A A A A+I ++G+ + E L+ Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++ N ++ +DI Y GEE AL+ S+ G+ +P + P AN Sbjct: 171 HLEN-------EKNIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 + T N ++ ++ + + + I HV ++E + Sbjct: 215 CVVLNAETLANITRAVEDRKPVIDKDITLMGKLKK---------GIGPHV----FLQEPI 261 Query: 259 SITFDELIEKHCGGIRGGWDNLL 281 + ++IE CGGI G + ++ Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283 >gi|295096019|emb|CBK85109.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 673 Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 R+ +I + G+ G GGAGF TG K D+ L++NA E EP D +M+ Sbjct: 132 REALIERIHQFGVAGLGGAGFPTGAKLHG----GGDKIETLIINAAECEPYITADDRLMQ 187 Query: 100 HEPHTLIEGCVI 111 ++EG I Sbjct: 188 DCAAQVVEGIRI 199 >gi|290509259|ref|ZP_06548630.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55] gi|289778653|gb|EFD86650.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55] Length = 551 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ +++G I Sbjct: 186 MQDCAAQIVDGIRI 199 >gi|90579150|ref|ZP_01234960.1| electron transport complex protein RnfC [Vibrio angustum S14] gi|90439983|gb|EAS65164.1| electron transport complex protein RnfC [Vibrio angustum S14] Length = 858 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWS-FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 +I ++ SG+ G GGAGF T K + V L++NA E EP D +MR Sbjct: 136 LIETIRLSGIAGLGGAGFPTARKLQGGLGNV-----DILIINAAECEPYITADDRLMRDY 190 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 +IEG I I I + ++L+ V E Sbjct: 191 AEEVIEGVRILRHIISPKLTIIGIEDNKPEAIKALEQHVTEA 232 >gi|301061234|ref|ZP_07202016.1| NADH-quinone oxidoreductase subunit F domain protein [delta proteobacterium NaphS2] gi|300444553|gb|EFK08536.1| NADH-quinone oxidoreductase subunit F domain protein [delta proteobacterium NaphS2] Length = 46 Score = 37.0 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 303 MDYDGLKEMGSG--LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 MD+D + ++G G LGT AV+V D + ++ L F+ ESCG Sbjct: 1 MDFDSMAKIGPGHRLGTGAVMVFDHTCCLVGITLNLIQFFARESCG 46 >gi|120553868|ref|YP_958219.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter aquaeolei VT8] gi|120323717|gb|ABM18032.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter aquaeolei VT8] Length = 609 Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPG 90 +D + R+ ++ ++ +G+ G GGAGF T +K + DR L++N E EP Sbjct: 116 IDDYKQLDREAVLQRIREAGISGMGGAGFPTDIKL----RPPRDRKVDTLILNGAECEPY 171 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAI 116 D MR + ++ G + ++ + Sbjct: 172 ITADDMTMREQAAEVVAGLKVMAWIL 197 >gi|213616359|ref|ZP_03372185.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 356 Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VNA E EP D+ +M + L+ G A A GA I ++ ++ R ++L Sbjct: 38 FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 S LL + +L D+ Y G+E + G++ P PA+V Sbjct: 95 ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G+ VNNV+ T+L + F + +++G V P TV + Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182 Query: 260 ITFDELI 266 ++ E++ Sbjct: 183 MSLHEVL 189 >gi|289577375|ref|YP_003476002.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter italicus Ab9] gi|297543662|ref|YP_003675964.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527088|gb|ADD01440.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter italicus Ab9] gi|296841437|gb|ADH59953.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 444 Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II ++ +G+ G GGAGF T +K S + ++VN E EP D +M P Sbjct: 127 IIEIIREAGITGMGGAGFPTHVKLS---PPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183 Query: 103 HTLIEGCVIASFAIGAHCAFIYV 125 ++ G A+G I V Sbjct: 184 EKIVFGLKAIMKAVGVERGIIGV 206 >gi|258545780|ref|ZP_05706014.1| electron transport complex protein RnfC [Cardiobacterium hominis ATCC 15826] gi|258518970|gb|EEV87829.1| electron transport complex protein RnfC [Cardiobacterium hominis ATCC 15826] Length = 630 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 10/84 (11%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99 D + + A G+ G GGAGF T K LV+NA E EP TC D I R Sbjct: 136 DALRERIAACGIVGLGGAGFPTARKLGHPANT-------LVINAAECEPYITCDDLQI-R 187 Query: 100 HEPHTLIEGCVIASFAIGA-HCAF 122 +I G IA+ +GA H F Sbjct: 188 ENAADIIHGAQIAAKILGAEHIHF 211 >gi|168180629|ref|ZP_02615293.1| putative electron transport protein [Clostridium botulinum NCTC 2916] gi|182668399|gb|EDT80378.1| putative electron transport protein [Clostridium botulinum NCTC 2916] Length = 436 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 30/203 (14%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ N E EP + + + P +I+G A A A A+I ++G+ + E L+ Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + N ++ +DI Y GEE AL+ S+ G+ +P + P AN Sbjct: 171 HLKN-------EENIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 + T N ++ ++ + + + I HV ++E + Sbjct: 215 CVVLNAETLANITRAVENRKPVIDKDITLMGKLKK---------GIGPHV----ILQEPI 261 Query: 259 SITFDELIEKHCGGIRGGWDNLL 281 + ++IE CGGI G + ++ Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283 >gi|149912038|ref|ZP_01900631.1| electron transport complex protein RnfC [Moritella sp. PE36] gi|149804899|gb|EDM64934.1| electron transport complex protein RnfC [Moritella sp. PE36] Length = 931 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 21/127 (16%) Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +L++NA E EP D +MR +I+G I I I + ++L+ Sbjct: 166 EFLLINAAECEPYITSDDVLMRERADDIIQGIEILRHMIKPALCVIGIEDNKPDAAQALE 225 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK---KGQPRLKPP 194 A++ K+ DIIV Y G E L++ L GK KGQ Sbjct: 226 TAIN------------KINLSNDIIVRKVPTKYPNGGEKQLIQMLTGKEISKGQ------ 267 Query: 195 FPANVGL 201 PA G+ Sbjct: 268 IPAQSGI 274 >gi|260427004|ref|ZP_05780983.1| eleCtron transport complex, rnfabcdge type, c subunit [Citreicella sp. SE45] gi|260421496|gb|EEX14747.1| eleCtron transport complex, rnfabcdge type, c subunit [Citreicella sp. SE45] Length = 476 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101 I V +G+ G GGA F +K + + H L++NA E EP TC DR +R Sbjct: 169 IAARVAEAGIVGMGGATFPAAVKLNLRDRYAL---HTLIINAAECEPYLTCDDRH-LRER 224 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGE 128 + +G I + A+G + + G+ Sbjct: 225 AEEVADGAGIMARALGVARIIVAIEGD 251 >gi|209695337|ref|YP_002263266.1| electron transport complex protein RnfC [Aliivibrio salmonicida LFI1238] gi|208009289|emb|CAQ79555.1| electron transport complex protein RnfC [Aliivibrio salmonicida LFI1238] Length = 716 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I ++ SG+ G GGAGF T K + + L++NA E EP D +M+ Sbjct: 137 LIERIRQSGISGMGGAGFPTSRKL----QSGIGKADMLIINAAECEPYITADDRLMQDYA 192 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 +I G I + A I + ++L A V E Sbjct: 193 AEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTE 232 >gi|237738936|ref|ZP_04569417.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 2_1_31] gi|229423536|gb|EEO38583.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 2_1_31] Length = 435 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%) Query: 7 RIFTNLYGLQGKSLS---DSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGF 60 +I +Y L GK ++ ++ + W + KI + +++ ++ G+ G GGA F Sbjct: 81 KIENRVYPLSGKVMTIFIENDKKEEWAELTKIANWETADKKELLDIIREKGIVGIGGATF 140 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 T +K + P D L++N E EP D +M P + Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPSS 181 >gi|56413045|ref|YP_150120.1| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361969|ref|YP_002141606.1| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127302|gb|AAV76808.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093446|emb|CAR58904.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 442 Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 35/187 (18%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VNA E EP D+ +M + L+ G + A A GA R I +E + A Sbjct: 38 FLVNAAECEPMLKVDQQLMWQQAARLVRGVLYAMTATGA-------REGVIAPKEKYRRA 90 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 +D + LL + +L D+ Y G+E + G++ P PA+V Sbjct: 91 IDAL--TPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G+ VNNV+ T+L + F + +++G V P TV + Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182 Query: 260 ITFDELI 266 ++ E++ Sbjct: 183 MSLHEVL 189 >gi|237808455|ref|YP_002892895.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] gi|237500716|gb|ACQ93309.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] Length = 459 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 35/186 (18%) Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +VNA E EP D+ +M LI G A GA I ++ ++ +L+ + Sbjct: 56 LVNAAECEPMLKVDQQLMTQHASQLIRGLRYGMAATGAREGIIALKAKYQPAIAALEPLL 115 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 E ++ +H Y G+E + G++ P P ++G Sbjct: 116 PE-----------------NVRIHILPDVYPAGDEVITIWQATGRRVPPAA---LPISIG 155 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 + VNNV+ T+L A+ + E + +I+G V P TV + + Sbjct: 156 V-----VVNNVQ------TLLNLAAALET----ETPVTHRTLTINGAVRNPMTVTVPLGV 200 Query: 261 TFDELI 266 T +++ Sbjct: 201 TLRDVL 206 >gi|213024342|ref|ZP_03338789.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 344 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VNA E EP D+ +M + L+ G A A GA I ++ ++ R ++L Sbjct: 38 FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 S LL + +L D+ Y G+E + G++ P PA+V Sbjct: 95 ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 G+ VNNV+ T+L + F + +++G V P TV + Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182 Query: 260 ITFDELI 266 ++ E++ Sbjct: 183 MSLHEVL 189 >gi|170758234|ref|YP_001787803.1| putative electron transport protein [Clostridium botulinum A3 str. Loch Maree] gi|169405223|gb|ACA53634.1| putative electron transport protein [Clostridium botulinum A3 str. Loch Maree] Length = 436 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 30/203 (14%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ N E EP + + + P +I+G A A A A+I ++G+ + E L+ Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGVKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + N ++ +DI Y GEE AL+ S+ G+ +P + P AN Sbjct: 171 HLKN-------EENIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 + T N ++ ++ + + E G +F ++E + Sbjct: 215 CVVLNAETLANITRAVEDRKPVIDKDITLMGKL--EKGIGPHVF-----------LQEPI 261 Query: 259 SITFDELIEKHCGGIRGGWDNLL 281 + ++IE CGGI G + ++ Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283 >gi|121997094|ref|YP_001001881.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588499|gb|ABM61079.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 506 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 115/307 (37%), Gaps = 62/307 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101 I V +G+ G GGA F +K V + L++N E EP TC DR +MR Sbjct: 132 IAARVGEAGIVGMGGAAFPAAVKLGAGQPVAT-----LILNGGECEPYLTCDDR-LMRER 185 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 +I+G + + A+GA I V +L+ A D LG G DV Sbjct: 186 AAGIIDGAQLMARALGAERTAIGVEDNKPEAIHALRRASD------ALG-----GPDVVP 234 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + + G E L+ +L G++ P A G G V+NV + V Sbjct: 235 V----PSLWPQGSEKHLIYTLTGREV------PAGARAGDIG--VVVHNVGTAYAVHRAA 282 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 R G S R G G V P E + + LIE+ GG+R +L Sbjct: 283 RHGRPLIS---RPVTVG------GGAVAEPGNFEAPLGLPLQALIEQ-AGGLREPPARVL 332 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 A G M G + E GT VI + +T+I +A R + Sbjct: 333 A------------GGPMMGQVAPL----EAAVAKGTNGVIALT-ATEIREAEGRPCI--- 372 Query: 342 HESCGQC 348 CG+C Sbjct: 373 --RCGRC 377 >gi|325663070|ref|ZP_08151520.1| hypothetical protein HMPREF0490_02260 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470524|gb|EGC73754.1| hypothetical protein HMPREF0490_02260 [Lachnospiraceae bacterium 4_1_37FAA] Length = 438 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Query: 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106 V +G+ G GGAGF T +K S Y++VNA E EPG C + + + +I Sbjct: 82 VAYAGITGMGGAGFPTAVKLS-----ADLHGGYILVNAAECEPGLCHNIRQIEEQCDKII 136 Query: 107 EG 108 G Sbjct: 137 RG 138 >gi|170756335|ref|YP_001782031.1| putative electron transport protein [Clostridium botulinum B1 str. Okra] gi|169121547|gb|ACA45383.1| putative electron transport protein [Clostridium botulinum B1 str. Okra] Length = 436 Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 30/203 (14%) Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y++ N E EP + + + P +I+G A A A A+I ++G+ + E L+ Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + N ++ +DI Y GEE AL+ S+ G+ +P + P AN Sbjct: 171 HLKN-------EENIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 + T N ++ ++ + + + I HV ++E + Sbjct: 215 CVVLNAETLANITRAVEDRKPVIDKDITLMGKLKK---------GIEPHV----FLQEPI 261 Query: 259 SITFDELIEKHCGGIRGGWDNLL 281 + ++IE CGGI G + ++ Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283 >gi|330881185|gb|EGH15334.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. race 4] Length = 78 Score = 36.2 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 21/29 (72%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + ++ D I+ VK SGL+GRGGAGF TG Sbjct: 50 LTQQSPDDIVQSVKDSGLKGRGGAGFPTG 78 >gi|288935201|ref|YP_003439260.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella variicola At-22] gi|288889910|gb|ADC58228.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella variicola At-22] Length = 719 Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + R+ +I + G+ G GGAGF TG K + D+ L++NA E EP D + Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185 Query: 98 MRHEPHTLIEGCVI 111 M+ +++G I Sbjct: 186 MQDCAAQIVDGIRI 199 >gi|310829669|ref|YP_003962026.1| phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [Eubacterium limosum KIST612] gi|308741403|gb|ADO39063.1| phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [Eubacterium limosum KIST612] Length = 567 Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 41/86 (47%) Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 +FA G ++ Y+ G + R+++++ A+ C + YD ++ G +I Sbjct: 390 TFAFGYEESYGYLAGNYARDKDAVLASALVCEMADYYKKQGMTLYDALEGLYQKFGYFIE 449 Query: 173 GEETALLESLEGKKGQPRLKPPFPAN 198 G ++ LE +EGKK + F AN Sbjct: 450 GIQSMTLEGIEGKKQIANIMEKFRAN 475 Searching..................................................done Results from round 2 >gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] gi|254040535|gb|ACT57331.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] Length = 425 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 425/425 (100%), Positives = 425/425 (100%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC Sbjct: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH Sbjct: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 Query: 421 RCNFQ 425 RCNFQ Sbjct: 421 RCNFQ 425 >gi|163759536|ref|ZP_02166621.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283133|gb|EDQ33419.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea phototrophica DFL-43] Length = 435 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 332/421 (78%), Positives = 374/421 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ KSL +M+RGHWD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGVYDKSLKGAMARGHWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE++RERE+LQAA+DECY +GLLG NSKLGYD+D+ VHHGAGAYICGEETALLE Sbjct: 121 TYIYVRGEYMREREALQAAIDECYEAGLLGKNSKLGYDMDVYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGIGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+MSI F ELI+ HCGGIRGGWDNLLAVIPGGSSVP +P + Sbjct: 241 LFCVSGHVNTPCTVEEAMSIPFRELIDTHCGGIRGGWDNLLAVIPGGSSVPLVPGADIVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++ SGLGTAAVIVMD+STD++KAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 TPMDFDSLRDLKSGLGTAAVIVMDKSTDVVKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM+R+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI++FRP +E RIDQY Sbjct: 361 VMDRMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEMEARIDQYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|315122721|ref|YP_004063210.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496123|gb|ADR52722.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 424 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 385/424 (90%), Positives = 401/424 (94%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL+GKSL +SM+RGHWD D IL KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGLKGKSLDESMARGHWDGTDNILGKGRDWIISEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK CSDRPHYLVVNADESEPGTCKDRDIMRHEPH LIEGCVIASFAIGAHC Sbjct: 61 STGMKWSFMPKTCSDRPHYLVVNADESEPGTCKDRDIMRHEPHVLIEGCVIASFAIGAHC 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 FIYVRGEFIRERESLQ AVDECYA GLLG NSKLGYDVDIIVHHGAGAYICGEETALLE Sbjct: 121 VFIYVRGEFIRERESLQTAVDECYARGLLGRNSKLGYDVDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAVVPTILRRGASWYS FGRENNRGTK Sbjct: 181 SLEGKKGLPRLKPPFPANMGLYGCPTTVNNVESIAVVPTILRRGASWYSSFGRENNRGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL QMRG Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLTGDQMRG 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYD LK MGSGLGTAAVIVMDRSTDII+AIWRLSVFYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDSLKAMGSGLGTAAVIVMDRSTDIIRAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER+V+G+AQK EID+L+EVSKNIEGRTICALGDAAAWPIQGLIKNFR ++EERIDQY+ Sbjct: 361 LMERMVRGVAQKHEIDMLFEVSKNIEGRTICALGDAAAWPIQGLIKNFRHVMEERIDQYN 420 Query: 421 RCNF 424 +F Sbjct: 421 VHHF 424 >gi|110633381|ref|YP_673589.1| NADH dehydrogenase I subunit F [Mesorhizobium sp. BNC1] gi|110284365|gb|ABG62424.1| NADH dehydrogenase subunit F [Chelativorans sp. BNC1] Length = 434 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 334/421 (79%), Positives = 375/421 (89%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG +SL +M+RGHWD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGQFDRSLHGAMARGHWDGTKAILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +DRPHYLVVNADESEPGTCKDRDI+RHEPHTL+EGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKAPTDRPHYLVVNADESEPGTCKDRDILRHEPHTLVEGCLIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECYA GLLG N+ G+D D+IVHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAHGLLGKNNIHGWDFDVIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FGRENN+GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRENNKGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 LFCISGHVNNPCTVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDSLRDLKSGLGTAAVIVMDKSTDIVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G A K EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RID++ Sbjct: 361 VMERLVRGEAHKHEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIDEFT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|150396117|ref|YP_001326584.1| NADH dehydrogenase I subunit F [Sinorhizobium medicae WSM419] gi|150027632|gb|ABR59749.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae WSM419] Length = 434 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 351/421 (83%), Positives = 386/421 (91%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL +M+RGHWD + LEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNIYGLMDKSLKGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECYA GLLG N+KLGYD+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAYGLLGKNNKLGYDIDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P QM+ Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|328543691|ref|YP_004303800.1| Nadh dehydrogenase i chain f transmembrane protein [polymorphum gilvum SL003B-26A1] gi|326413435|gb|ADZ70498.1| Nadh dehydrogenase i chain f transmembrane protein [Polymorphum gilvum SL003B-26A1] Length = 433 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 318/419 (75%), Positives = 361/419 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL L + RGHWDN +++KGRDWI+ E+K+SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGLHDWGLEGARKRGHWDNTKALIDKGRDWIVEEMKSSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKASDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGRNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDNLLAVIPGGSSVPCL A Q++ Sbjct: 241 LFCISGHVNRPCTVEEELGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCLTADQVKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 VPMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM+R+V+G A K EID+L+ V+K +EG TICALGDAAAWPIQGLIKNFR +IEERID Y Sbjct: 361 VMDRMVQGNASKEEIDMLFTVTKQVEGHTICALGDAAAWPIQGLIKNFRHVIEERIDDY 419 >gi|15965023|ref|NP_385376.1| NADH dehydrogenase I subunit F [Sinorhizobium meliloti 1021] gi|307301095|ref|ZP_07580864.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] gi|307317829|ref|ZP_07597267.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] gi|7387963|sp|P56912|NUOF1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 1; AltName: Full=NADH dehydrogenase I subunit F 1; AltName: Full=NDH-1 subunit F 1 gi|5650740|emb|CAB51626.1| nuoF1 [Sinorhizobium meliloti] gi|15074202|emb|CAC45849.1| NADH-quinone oxidoreductase subunit F 1 [Sinorhizobium meliloti 1021] gi|306896591|gb|EFN27339.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] gi|306904050|gb|EFN34636.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] Length = 434 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 350/421 (83%), Positives = 386/421 (91%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M+RGHWD + LEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNIYGLKDKSLRGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECY GLLG N+KLGYD+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P QM+ Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|227821623|ref|YP_002825593.1| NADH dehydrogenase I subunit F [Sinorhizobium fredii NGR234] gi|227340622|gb|ACP24840.1| NADH-quinone oxidoreductase chain F 1 [Sinorhizobium fredii NGR234] Length = 434 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 347/421 (82%), Positives = 385/421 (91%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M+RGHWD +LEKGRDWIINEVKASGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNIYGLKDKSLKGAMARGHWDGTKALLEKGRDWIINEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMAANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQAA+DECY GLLG N+KLGYD+D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDVFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WYS FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYSSFGRPNNHGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHVN PCTVE++MSI F ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+P QM+ Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIDKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEQRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|222148279|ref|YP_002549236.1| NADH dehydrogenase I subunit F [Agrobacterium vitis S4] gi|221735267|gb|ACM36230.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4] Length = 434 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 332/421 (78%), Positives = 370/421 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PHTL+EGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLLEGCVIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY GLLG N+KLG+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYEYGLLGKNNKLGWDYDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE+M ITF ELIE+H GGIRGGWDNLLAVIPGG+S P + A + Sbjct: 241 LFMISGHVNKPCTVEETMGITFRELIERHAGGIRGGWDNLLAVIPGGASCPVVKAEDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+++ S GTAA+IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 VPMDFDGLRDVKSSFGTAAIIVMDKSTDIIKAIARLSQFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE RID Y Sbjct: 361 VMERMVKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEARIDDYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|118590033|ref|ZP_01547437.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM 12614] gi|118437530|gb|EAV44167.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM 12614] Length = 433 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 316/419 (75%), Positives = 360/419 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL L + RG WDN +++KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLIDKGRDWIIQEMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A +A+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGYAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSALGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN P T EE + I+F E+I+KHCGGIRGGWDNLLAVIPGGSSVPCL A Q++ Sbjct: 241 LFCVSGHVNKPSTFEEELGISFAEMIDKHCGGIRGGWDNLLAVIPGGSSVPCLTAEQIKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+V+G + EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y Sbjct: 361 VMERMVRGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419 >gi|149202664|ref|ZP_01879636.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035] gi|149143946|gb|EDM31980.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035] Length = 431 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 321/418 (76%), Positives = 365/418 (87%), Gaps = 1/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL +++RGHWD KIL+ GRDWI+N++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQTAIDEAYAAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+SGFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSGFGRPNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEFMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIK 418 >gi|83953906|ref|ZP_00962627.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1] gi|83841851|gb|EAP81020.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1] Length = 431 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 317/421 (75%), Positives = 362/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD IL+ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P QMR Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|83942667|ref|ZP_00955128.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36] gi|83846760|gb|EAP84636.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36] Length = 431 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 315/421 (74%), Positives = 361/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD IL+ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P QMR Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAA+IVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAIIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|222085581|ref|YP_002544111.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter K84] gi|221723029|gb|ACM26185.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter K84] Length = 434 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 327/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG + KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGHKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GA+ Sbjct: 61 PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY +GLLG N+KLG+D D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKLGWDYDVYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+M ITF EL++KH GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNRPCTVEETMGITFRELVDKHAGGIRGGWDNLLAVIPGGASCPIVPAADIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+E+ S GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLREVKSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VLERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|110680462|ref|YP_683469.1| NADH dehydrogenase I subunit F [Roseobacter denitrificans OCh 114] gi|109456578|gb|ABG32783.1| NADH-quinone oxidoreductase chain F [Roseobacter denitrificans OCh 114] Length = 431 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 311/421 (73%), Positives = 360/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD D I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|86357243|ref|YP_469135.1| NADH dehydrogenase I subunit F [Rhizobium etli CFN 42] gi|86281345|gb|ABC90408.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN 42] Length = 434 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 327/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNRPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +MER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 LMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|84516731|ref|ZP_01004089.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis SKA53] gi|84509199|gb|EAQ05658.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis SKA53] Length = 428 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 319/421 (75%), Positives = 360/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + +RGHWD I++KGRDWI+NE+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLKGAQARGHWDGTADIIKKGRDWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE YA+GL+G N+ K G+D +I + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYAAGLVGKNACKSGWDFEIYLTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG +W+SGFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGAWFSGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEEMSIPFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLV+G A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 361 RVMARLVEGNASVDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|190891291|ref|YP_001977833.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652] gi|190696570|gb|ACE90655.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli CIAT 652] Length = 434 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 328/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|85703201|ref|ZP_01034305.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217] gi|85672129|gb|EAQ26986.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217] Length = 431 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 317/418 (75%), Positives = 363/418 (86%), Gaps = 1/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL +++RGHWD KIL+ GRDWI+N++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQVAIDEAYAAGLVGKNACKSGWDFDIYLAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEHMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+I+AIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIRAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMDRLVRGDAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIK 418 >gi|116251471|ref|YP_767309.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. viciae 3841] gi|241204092|ref|YP_002975188.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115256119|emb|CAK07200.1| putative NADH-quinone oxidoreductase subunit F [Rhizobium leguminosarum bv. viciae 3841] gi|240857982|gb|ACS55649.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 434 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 329/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|304391405|ref|ZP_07373347.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130] gi|303295634|gb|EFL89992.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130] Length = 434 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 324/419 (77%), Positives = 367/419 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL +MSRGHW + + GRDW+IN+ KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLHDKSLKGAMSRGHWSETKQFIANGRDWVINQTKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S+RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCV+A FA+GAH Sbjct: 61 PTGLKWSFMPKEESERPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVLAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE++RERE+L+AA+DECY +GLLG N+K G+D DI V HGAGAYICGEETALLE Sbjct: 121 CYIYVRGEYMREREALEAAIDECYEAGLLGKNNKNGWDYDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES+AVVPTILRRG W++GFG ENNRGTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESVAVVPTILRRGPEWFAGFGAENNRGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE+MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSV +PA QM Sbjct: 241 LFCISGHVERPCTVEEAMSIPFRELIEKHCGGIRGGWDNLLAVIPGGSSVRMVPAEQMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L ++ SGLGTAAVIVMD+ TDII+AI RL+ FYKHESCGQCTPCREGTGWM R Sbjct: 301 TPMDFDSLSKLKSGLGTAAVIVMDKETDIIRAIARLAAFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+V+G AQKREID+L++V+K IEG TICALGDAAAWPIQGLI +FRP +E+RID+Y Sbjct: 361 VMERMVEGRAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLITHFRPEMEKRIDEY 419 >gi|163732058|ref|ZP_02139504.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149] gi|161394356|gb|EDQ18679.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149] Length = 431 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 311/421 (73%), Positives = 360/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD D I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P QM+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWGNLKAVIPGGSSVPMIPGAQMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|254469558|ref|ZP_05082963.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062] gi|211961393|gb|EEA96588.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062] Length = 433 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 322/426 (75%), Positives = 363/426 (85%), Gaps = 3/426 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YGL L + RG W +I+EKGRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLNDSDRIFTNIYGLHDWGLEGARQRGSWSGTKEIIEKGRDWIIDEMKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAV PTIL+RG +W+SG GRENN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVAPTILKRGGAWFSGIGRENNAGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+M I+F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +R Sbjct: 241 LFCVSGHVNKPCTVEEAMGISFKELIEKHCGGIRGGWDNLLAVIPGGSSVPCVKGEDIRD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+DGL+E+GS LGTAAVIVMD STDIIKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDGLREVGSSLGTAAVIVMDNSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 VMER+VKG + EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RIDQY Sbjct: 361 VMERMVKGESSYDEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEDRIDQYV 420 Query: 420 --HRCN 423 HR Sbjct: 421 AKHRTP 426 >gi|254486414|ref|ZP_05099619.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101] gi|214043283|gb|EEB83921.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101] Length = 431 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 311/421 (73%), Positives = 358/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD IL+ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMQANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P QM+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWSNLKAVIPGGSSVPMIPGAQMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGDANPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|209548868|ref|YP_002280785.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534624|gb|ACI54559.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 434 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 328/419 (78%), Positives = 370/419 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA + Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+DGL+ +GS GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419 >gi|114771823|ref|ZP_01449216.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium HTCC2255] gi|114547639|gb|EAU50530.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium HTCC2255] Length = 431 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 307/421 (72%), Positives = 353/421 (83%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ +SL + SRGHW KI++ G DWII+E+K SGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRSLRGAQSRGHWSETAKIIKNGHDWIIDEMKNSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMR++PH LIEG +IASFA+ ++ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRNDPHALIEGALIASFAMSSNA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE+LQ A+DECY +GLLG N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEFIREREALQLAIDECYDAGLLGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+ FGRENN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFKSFGRENNYGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI EL+++HCGG+RGGW NL AVIPGGSSVP LPA Sbjct: 241 KLFAISGHVNNPCVVEEAMSIPLQELLDRHCGGVRGGWKNLKAVIPGGSSVPLLPADICS 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDWLREQRSGLGTAAVIVMDQNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLVKG A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVKGDAEPDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|149914585|ref|ZP_01903115.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b] gi|149811378|gb|EDM71213.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b] Length = 431 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 315/421 (74%), Positives = 363/421 (86%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ +SL +M+RGHWD KIL+ GR+WII+++KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRSLKGAMARGHWDGTAKILQNGREWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASYAMKAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLIGKNACKSGYDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV PTILRRG W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAMAGLYGCPTTVNNVESIAVAPTILRRGPEWFAGFGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+ISGHVN PC VEESMSI+F+ELI+KHCGGIRGGW NL AVIPGGSSVPC+ MR Sbjct: 241 KIFAISGHVNAPCVVEESMSISFEELIDKHCGGIRGGWSNLKAVIPGGSSVPCVHGENMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MD+D LKE GS LGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKAQ 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|254501883|ref|ZP_05114034.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii DFL-11] gi|222437954|gb|EEE44633.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii DFL-11] Length = 433 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 313/419 (74%), Positives = 356/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL L + RG WDN +L+KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLLDKGRDWIIQEMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG W++ GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFASLGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN P T EE + + F E+I+KHCGGIRGGWDNLLAVIPGGSSVPC A +++ Sbjct: 241 LFCVSGHVNQPATFEEELGVPFSEMIDKHCGGIRGGWDNLLAVIPGGSSVPCCTADEIKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ MGSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGMGSGLGTAAVIVMDKSTDVIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMER+VKG + EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y Sbjct: 361 VMERMVKGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419 >gi|170039879|ref|XP_001847747.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex quinquefasciatus] gi|167863468|gb|EDS26851.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex quinquefasciatus] Length = 474 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 273/421 (64%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG +WIINE KASGLRGRGGAGF Sbjct: 48 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTEWIINETKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA +GA A Sbjct: 108 TGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRCMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFASFGRTRNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL +IPGGSS P +P Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLGIIPGGSSTPIIPKSVCDD 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM + Sbjct: 348 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGIAWMHK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ ++ Sbjct: 408 MMHRFVDGNARPDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKHE 467 Query: 421 R 421 + Sbjct: 468 Q 468 >gi|114707373|ref|ZP_01440270.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi HTCC2506] gi|114537254|gb|EAU40381.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi HTCC2506] Length = 434 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 323/421 (76%), Positives = 373/421 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M RGH+D +I+EKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLRDKSLKAAMKRGHFDGTKEIVEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKESAGRPHYLVVNADESEPGTCKDREIMRNDPFTLIEGCLIAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE+IRERE+LQ AVDECY GLLG+++K G+D DI+VHHGAGAYICGEETALLE Sbjct: 121 AYIYIRGEYIREREALQKAVDECYEEGLLGADNKCGWDFDIVVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA W++G GRENN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAGWFAGIGRENNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE+MSI+F ELI+KHCGG+RGGWDNLLAVIPGGSSVP +PA + Sbjct: 241 LFCISGHVEQPCTVEEAMSISFRELIDKHCGGVRGGWDNLLAVIPGGSSVPLVPAKDIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+DGLK++ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDGLKDIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V G A+K EID+L +V+K +EG TICALGDAAAWPIQGL+++FRP IE RID++ Sbjct: 361 VMERMVVGNAKKSEIDMLLQVTKQVEGHTICALGDAAAWPIQGLMRHFRPEIERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|325292639|ref|YP_004278503.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3] gi|325060492|gb|ADY64183.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3] Length = 434 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 316/419 (75%), Positives = 365/419 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL+ KSL +RGHWD +I+EKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGLKDKSLKGVRARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHV PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P + M+ Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++E+ S GT +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419 >gi|83951746|ref|ZP_00960478.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens ISM] gi|83836752|gb|EAP76049.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens ISM] Length = 431 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 321/421 (76%), Positives = 366/421 (86%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ +SL + +RGHWD IL KGRDWII+ +KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRSLKGAQARGHWDGTAGILAKGRDWIIDNMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMK 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E+GS LGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDALREVGSSLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI Sbjct: 361 RVMDRLVKGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRIKAQ 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|312116350|ref|YP_004013946.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii ATCC 17100] gi|311221479|gb|ADP72847.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii ATCC 17100] Length = 430 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 299/420 (71%), Positives = 350/420 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+D+DRIF NLYG L + RG WDN ILEKG+DWII E+KASGLRGRGGAGF Sbjct: 1 MLSDKDRIFKNLYGQHDWGLKGARERGAWDNTKAILEKGQDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PH LIEG +I +FA+ A+ Sbjct: 61 STGMKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIIRHDPHLLIEGSLIGAFAMRANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEFIRER+ LQAA+D+ Y + L+G ++ G+D DI VHHGAGAYICGEETA LE Sbjct: 121 VYIYIRGEFIRERQRLQAAIDQAYEARLIGKDNINGWDCDIYVHHGAGAYICGEETAQLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGKKGQPRLKPPFPAN GL+G PTTVNNVESIAVVP ILRRGA+W++ G+ NN GTK Sbjct: 181 SIEGKKGQPRLKPPFPANAGLWGAPTTVNNVESIAVVPDILRRGAAWFAALGKPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PC VEE M I+F EL++KH GG+RGGWDNLLA+IPGGSSVPC+PA Sbjct: 241 LFCISGHVERPCNVEEEMGISFRELVDKHAGGVRGGWDNLLAIIPGGSSVPCVPAHMCND 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++GSGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 LGMDFDSLRKVGSGLGTAAVIVMDKSTDIVKAISRLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V+G A+ EID+L++VSK IEG TICALGDAAAWP+QGLI++FR +E RID +H Sbjct: 361 VMERMVEGRAEHAEIDMLWDVSKQIEGHTICALGDAAAWPVQGLIRHFRHEMEARIDAFH 420 >gi|255262502|ref|ZP_05341844.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62] gi|255104837|gb|EET47511.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62] Length = 429 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 317/422 (75%), Positives = 365/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ +SL + RGHWD KI++ GRDWII+++KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNIYGMHDRSLKGAQKRGHWDGTAKIIKNGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N +K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKTGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ M+ Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEHMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGDADPEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIAH 420 Query: 419 YH 420 Sbjct: 421 KR 422 >gi|256159529|ref|ZP_05457297.1| NADH dehydrogenase I subunit F [Brucella ceti M490/95/1] gi|256254816|ref|ZP_05460352.1| NADH dehydrogenase I subunit F [Brucella ceti B1/94] gi|261221997|ref|ZP_05936278.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|265997961|ref|ZP_06110518.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] gi|260920581|gb|EEX87234.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|262552429|gb|EEZ08419.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] Length = 435 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 320/421 (76%), Positives = 365/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAVGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|161618771|ref|YP_001592658.1| NADH dehydrogenase I subunit F [Brucella canis ATCC 23365] gi|163843080|ref|YP_001627484.1| NADH dehydrogenase I subunit F [Brucella suis ATCC 23445] gi|254704122|ref|ZP_05165950.1| NADH dehydrogenase I subunit F [Brucella suis bv. 3 str. 686] gi|260566629|ref|ZP_05837099.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|261754788|ref|ZP_05998497.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] gi|161335582|gb|ABX61887.1| NADH-quinone oxidoreductase, F subunit [Brucella canis ATCC 23365] gi|163673803|gb|ABY37914.1| NADH-quinone oxidoreductase, F subunit [Brucella suis ATCC 23445] gi|260156147|gb|EEW91227.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|261744541|gb|EEY32467.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] Length = 435 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 320/421 (76%), Positives = 364/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|148559285|ref|YP_001258785.1| NADH dehydrogenase I subunit F [Brucella ovis ATCC 25840] gi|254701575|ref|ZP_05163403.1| NADH dehydrogenase I subunit F [Brucella suis bv. 5 str. 513] gi|254706978|ref|ZP_05168806.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M163/99/10] gi|254709915|ref|ZP_05171726.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis B2/94] gi|254713916|ref|ZP_05175727.1| NADH dehydrogenase I subunit F [Brucella ceti M644/93/1] gi|254717026|ref|ZP_05178837.1| NADH dehydrogenase I subunit F [Brucella ceti M13/05/1] gi|254718916|ref|ZP_05180727.1| NADH dehydrogenase I subunit F [Brucella sp. 83/13] gi|256031408|ref|ZP_05445022.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M292/94/1] gi|256369239|ref|YP_003106747.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915] gi|261218833|ref|ZP_05933114.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261314441|ref|ZP_05953638.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261317461|ref|ZP_05956658.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261321668|ref|ZP_05960865.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261752128|ref|ZP_05995837.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|265983903|ref|ZP_06096638.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|265988497|ref|ZP_06101054.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|294852164|ref|ZP_06792837.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026] gi|306838236|ref|ZP_07471088.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653] gi|306841955|ref|ZP_07474632.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2] gi|306843744|ref|ZP_07476343.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1] gi|148370542|gb|ABQ60521.1| NADH oxidoreductase (quinone), f subunit [Brucella ovis ATCC 25840] gi|255999399|gb|ACU47798.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915] gi|260923922|gb|EEX90490.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261294358|gb|EEX97854.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261296684|gb|EEY00181.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261303467|gb|EEY06964.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261741881|gb|EEY29807.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|264660694|gb|EEZ30955.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|264662495|gb|EEZ32756.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|294820753|gb|EFG37752.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026] gi|306275935|gb|EFM57648.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1] gi|306287946|gb|EFM59357.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2] gi|306406680|gb|EFM62907.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653] Length = 435 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 320/421 (76%), Positives = 365/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|256060919|ref|ZP_05451077.1| NADH dehydrogenase I subunit F [Brucella neotomae 5K33] gi|261324919|ref|ZP_05964116.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261300899|gb|EEY04396.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] Length = 435 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 319/421 (75%), Positives = 365/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTI+RRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTIMRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|126727150|ref|ZP_01742987.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium HTCC2150] gi|126703578|gb|EBA02674.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium HTCC2150] Length = 433 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 309/421 (73%), Positives = 361/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L+ + +RGHWD I++KGRDWI++E+KASGLRGRGGAGF Sbjct: 3 MLADKDRIFTNLYGMHDRTLAGAKARGHWDGTAAIIKKGRDWIVDEMKASGLRGRGGAGF 62 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG ++ASFA+ A+ Sbjct: 63 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALVASFAMNANT 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE+LQ A+DE YA GLLG N+ K G+D D+ +HHGAGAYICGEETALL Sbjct: 123 CYIYIRGEFIREREALQNAIDEAYADGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALL 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG+SW+ GFGR+NN GT Sbjct: 183 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSSWFKGFGRDNNAGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSIT EL++KHCGG+RGGW NL AVIPGGSSVP LPA + Sbjct: 243 KLFAISGHVNNPCVVEEAMSITLPELLDKHCGGVRGGWGNLKAVIPGGSSVPLLPADICK 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 303 DAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 363 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 422 Query: 420 H 420 Sbjct: 423 R 423 >gi|90417838|ref|ZP_01225750.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337510|gb|EAS51161.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans SI85-9A1] Length = 435 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 319/421 (75%), Positives = 363/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL+ KSL +M RGH+D + I+ KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNIYGLRDKSLKGAMKRGHFDGIADIIGKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADESEPGTCKDR+IMR++P TLIEGCVIA FA+GA+ Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVINADESEPGTCKDREIMRNDPFTLIEGCVIAGFAMGANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+IRER++LQ A+DECY +GLLG ++K G+D DIIVHHGAGAYICGEETALLE Sbjct: 121 CYIYVRGEYIRERQALQRAIDECYEAGLLGRDNKCGWDYDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG W++G GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFAGLGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV PCTVEE M I F ELIEKHCGG+RGGWDNLLAVIPGGSSVP +PA + Sbjct: 241 LYCISGHVEQPCTVEEEMGIPFRELIEKHCGGVRGGWDNLLAVIPGGSSVPLVPAADIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+DGL+E+ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDGLREIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+ G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR IE RID Y Sbjct: 361 VMERMATGNAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLVRHFRAEIERRIDDYS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|195030314|ref|XP_001988013.1| GH10936 [Drosophila grimshawi] gi|193904013|gb|EDW02880.1| GH10936 [Drosophila grimshawi] Length = 476 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 279/423 (65%), Positives = 330/423 (78%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINEVK SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEVKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G ++ GYD D+ +H GAGAYICGEETAL+E Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYDFDVFMHRGAGAYICGEETALIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPKKVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLIHFYKHESCGQCTPCREGIGWMNK 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 409 IMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 468 Query: 421 RCN 423 + Sbjct: 469 QQP 471 >gi|302791665|ref|XP_002977599.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii] gi|300154969|gb|EFJ21603.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii] Length = 483 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 286/421 (67%), Positives = 339/421 (80%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG+ L +M+RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 53 LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 112 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 113 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 172 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ AV E YA+G +G N+ GYD DI VH GAGAYICGEETALLE Sbjct: 173 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 232 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 233 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 292 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 293 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 352 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 353 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 412 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER+ G A EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 413 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILERA 472 Query: 421 R 421 + Sbjct: 473 K 473 >gi|195385529|ref|XP_002051457.1| GJ12140 [Drosophila virilis] gi|194147914|gb|EDW63612.1| GJ12140 [Drosophila virilis] Length = 476 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 277/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GY+ D+ +H GAGAYICGEETAL+E Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 289 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 409 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 468 Query: 421 R 421 + Sbjct: 469 Q 469 >gi|23501694|ref|NP_697821.1| NADH dehydrogenase I subunit F [Brucella suis 1330] gi|23347616|gb|AAN29736.1| NADH dehydrogenase I, F subunit [Brucella suis 1330] Length = 435 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 319/421 (75%), Positives = 363/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKG DWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGCDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|15888604|ref|NP_354285.1| NADH dehydrogenase I subunit F [Agrobacterium tumefaciens str. C58] gi|15156324|gb|AAK87070.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens str. C58] Length = 434 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 318/419 (75%), Positives = 366/419 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL+ KSL M+RGHWD +I+EKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGLKDKSLKGVMARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH Sbjct: 61 PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDYDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHV PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P + M+ Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++E+ S GT +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419 >gi|254461305|ref|ZP_05074721.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium HTCC2083] gi|206677894|gb|EDZ42381.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae bacterium HTCC2083] Length = 433 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 311/419 (74%), Positives = 361/419 (86%), Gaps = 2/419 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + +RGHWD I++KGRDW+I+++KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAAIIKKGRDWVIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DE Y +GL+G N +K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W+S FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGI+GGWDNL AVIPGGSSVPC+ +MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIKGGWDNLKAVIPGGSSVPCVRGEKMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+D L+ ++GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DATMDFDYLRNDLGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MRVMERLV G A EID+L++V+K +EG TICALGDAAAWPIQGLI NFR IE+RI Sbjct: 361 MRVMERLVHGNADPSEIDMLWDVTKQVEGHTICALGDAAAWPIQGLINNFRDEIEDRIK 419 >gi|163793192|ref|ZP_02187168.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199] gi|159181838|gb|EDP66350.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199] Length = 434 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 287/421 (68%), Positives = 333/421 (79%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YG L + RG W N +L + + ++ VKASGLRGRGGAGF Sbjct: 1 MLKDDDRIFTNVYGWFDWGLDGARKRGDWSNTKALLAQTPEELVEAVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK ++PHYLVVNADESEPGTCKDRDI+RHEPH LIEGC+I +++ A Sbjct: 61 PTGLKWSFMPKEVKEKPHYLVVNADESEPGTCKDRDILRHEPHKLIEGCLIGGYSMRAKA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E ++LQAA+D+ Y +GL+G N+ GYD D+ +H GAGAYICGEETALL Sbjct: 121 AYIYIRGEFYNEAQNLQAAIDQAYDAGLIGKNACGSGYDFDVFLHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVPTILRRG W++ GR N GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPTILRRGPEWFAALGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE + I ELI+KH GG+ GGWDNLL VIPGGSSVP LP Sbjct: 241 KLFCISGHVNNPCNVEEELGIPLRELIDKHAGGVIGGWDNLLGVIPGGSSVPVLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVM++STDI+KAI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLREVRSGLGTAAVIVMNQSTDIVKAIARLSAFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+V+G A EID+L EVS+ IEG TICALGDAAAWP+QGLI++FRP +E RI Y Sbjct: 361 RVMERMVRGEADVDEIDVLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRPEMERRIAAY 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|225627304|ref|ZP_03785341.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo] gi|260168542|ref|ZP_05755353.1| NADH dehydrogenase I subunit F [Brucella sp. F5/99] gi|261758015|ref|ZP_06001724.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99] gi|225617309|gb|EEH14354.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo] gi|261737999|gb|EEY25995.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99] Length = 435 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 319/421 (75%), Positives = 365/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPEQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|17987436|ref|NP_540070.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str. 16M] gi|62289756|ref|YP_221549.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 1 str. 9-941] gi|82699684|ref|YP_414258.1| NADH dehydrogenase I subunit F [Brucella melitensis biovar Abortus 2308] gi|189024001|ref|YP_001934769.1| NADH dehydrogenase I subunit F [Brucella abortus S19] gi|225852323|ref|YP_002732556.1| NADH dehydrogenase I subunit F [Brucella melitensis ATCC 23457] gi|237815243|ref|ZP_04594241.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308 A] gi|254689063|ref|ZP_05152317.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 6 str. 870] gi|254693545|ref|ZP_05155373.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 3 str. Tulya] gi|254697197|ref|ZP_05159025.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 2 str. 86/8/59] gi|254730093|ref|ZP_05188671.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 4 str. 292] gi|256044486|ref|ZP_05447390.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str. Rev.1] gi|256113342|ref|ZP_05454200.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 3 str. Ether] gi|256257312|ref|ZP_05462848.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 9 str. C68] gi|256264178|ref|ZP_05466710.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|260545494|ref|ZP_05821235.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260563840|ref|ZP_05834326.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260754561|ref|ZP_05866909.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260757782|ref|ZP_05870130.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260761607|ref|ZP_05873950.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260883588|ref|ZP_05895202.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|261213810|ref|ZP_05928091.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|265990910|ref|ZP_06103467.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|265994748|ref|ZP_06107305.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] gi|297248161|ref|ZP_06931879.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5 str. B3196] gi|17983129|gb|AAL52334.1| NADH-quinone oxidoreductase chain f [Brucella melitensis bv. 1 str. 16M] gi|62195888|gb|AAX74188.1| NuoF, NADH dehydrogenase I, F subunit [Brucella abortus bv. 1 str. 9-941] gi|82615785|emb|CAJ10783.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella melitensis biovar Abortus 2308] gi|189019573|gb|ACD72295.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella abortus S19] gi|225640688|gb|ACO00602.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis ATCC 23457] gi|237790080|gb|EEP64290.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308 A] gi|260096901|gb|EEW80776.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260153856|gb|EEW88948.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260668100|gb|EEX55040.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260672039|gb|EEX58860.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260674669|gb|EEX61490.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260873116|gb|EEX80185.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|260915417|gb|EEX82278.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|262765861|gb|EEZ11650.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] gi|263001694|gb|EEZ14269.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|263094396|gb|EEZ18241.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|297175330|gb|EFH34677.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5 str. B3196] gi|326408830|gb|ADZ65895.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella melitensis M28] gi|326538546|gb|ADZ86761.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis M5-90] Length = 435 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 319/421 (75%), Positives = 364/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+G H Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGVHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A M Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++E S GT +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|260462235|ref|ZP_05810479.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum WSM2075] gi|259032095|gb|EEW33362.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum WSM2075] Length = 434 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 317/421 (75%), Positives = 363/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF N+YGL KSL+ +M+RG WDN I+ KGR+WI+NE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFNNIYGLFDKSLAGAMARGAWDNTPGIIAKGREWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDRDI+R++PHTL+EG IA FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVVNADESEPGTCKDRDILRNDPHTLVEGSFIAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQ A+DE Y + L+G N+ GYD DI +HHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+ Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR +E RID++ Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|163746205|ref|ZP_02153564.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45] gi|161380950|gb|EDQ05360.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45] Length = 431 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 313/421 (74%), Positives = 359/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ ++L + SRGHWD I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGMHDRTLKGAQSRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 121 CYIYLRGEYIREREALQTAIDEAYEAGLVGKNASKSGWDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRANNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSIGFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|195115497|ref|XP_002002293.1| GI13499 [Drosophila mojavensis] gi|193912868|gb|EDW11735.1| GI13499 [Drosophila mojavensis] Length = 476 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 277/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GY+ D+ +H GAGAYICGEETAL+E Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 409 IMTRFVKGDAQPSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 468 Query: 421 R 421 + Sbjct: 469 Q 469 >gi|302786848|ref|XP_002975195.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii] gi|300157354|gb|EFJ23980.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii] Length = 460 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 286/421 (67%), Positives = 339/421 (80%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG+ L +M+RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 30 LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 89 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 90 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 149 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ AV E YA+G +G N+ GYD DI VH GAGAYICGEETALLE Sbjct: 150 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 209 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 210 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 269 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 270 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 329 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 330 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 389 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER+ G A EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 390 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILERA 449 Query: 421 R 421 + Sbjct: 450 K 450 >gi|56697615|ref|YP_167984.1| NADH dehydrogenase I subunit F [Ruegeria pomeroyi DSS-3] gi|56679352|gb|AAV96018.1| NADH-quinone oxidoreductase, F subunit [Ruegeria pomeroyi DSS-3] Length = 432 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 316/422 (74%), Positives = 367/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L +M+RGHWD I+ KGRDWII ++K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLKGAMARGHWDGTAGIIGKGRDWIIQQMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N +K G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAEPEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|126736062|ref|ZP_01751806.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2] gi|126714619|gb|EBA11486.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2] Length = 428 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 317/421 (75%), Positives = 360/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D++RIFTNLYG+ ++L + +RGHWD I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLKDENRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DECYA+GL+G N+ K G+D DI + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREKEALQAAIDECYAAGLVGPNAAKSGWDFDIYLTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++G GR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFAGMGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLV+G A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 361 RVMARLVEGNASVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRIKDK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|283046718|ref|NP_001164305.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Tribolium castaneum] gi|270008216|gb|EFA04664.1| hypothetical protein TcasGA2_TC014119 [Tribolium castaneum] Length = 478 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 275/423 (65%), Positives = 333/423 (78%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L ++ RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LSDEDRIFTNLYGKHDWRLKGALKRGDWYKTKEILLKGSDWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAKAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GLLG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQVAIAEAYQAGLLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 230 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGTWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSITF EL+E+H GGI GGWDNLLA+IPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSITFKELVERHAGGIIGGWDNLLAIIPGGSSTPLIPKSVCED 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG WM + Sbjct: 350 VIMDFDGLVAAQTSLGTAAIIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++H Sbjct: 410 IMYRFVDGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRKFH 469 Query: 421 RCN 423 N Sbjct: 470 EQN 472 >gi|289743527|gb|ADD20511.1| NADH dehydrogenase flavoprotein 1 ubiquinone [Glossina morsitans morsitans] Length = 474 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 278/419 (66%), Positives = 331/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L+ ++ RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LADQDRIFTNLYGRHDWRLNGALKRGDWYKTKEIVLKGADWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ A Sbjct: 110 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGAWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSIT ELIE+H GG+ GGW+NLLAVIPGGSS P +P Sbjct: 290 LFNISGHVNTPCTVEEEMSITLKELIERHAGGVCGGWENLLAVIPGGSSTPLIPKKVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DGL + LGTAA+IVMD+STDIIKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 AIMDFDGLIAAQTSLGTAAIIVMDKSTDIIKAIARLIEFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R V G AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y Sbjct: 410 IMARFVSGNAQAAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKY 468 >gi|195434685|ref|XP_002065333.1| GK15392 [Drosophila willistoni] gi|194161418|gb|EDW76319.1| GK15392 [Drosophila willistoni] Length = 478 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 275/419 (65%), Positives = 327/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGPWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVKNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKSVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLH 468 >gi|194760181|ref|XP_001962320.1| GF15407 [Drosophila ananassae] gi|190616017|gb|EDV31541.1| GF15407 [Drosophila ananassae] Length = 477 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG DWIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGNWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ QY Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEVEKRMQQYA 469 Query: 421 R 421 + Sbjct: 470 Q 470 >gi|154253660|ref|YP_001414484.1| NADH dehydrogenase I subunit F [Parvibaculum lavamentivorans DS-1] gi|154157610|gb|ABS64827.1| NADH-quinone oxidoreductase, F subunit [Parvibaculum lavamentivorans DS-1] Length = 429 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 311/417 (74%), Positives = 347/417 (83%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGLQ L + SRG WD I+ KGRDWI++E+K SGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGLQDWRLKAARSRGDWDGTADIIAKGRDWILDEMKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+P LIEGC+IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPQKLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+DE Y +GL+G N+ G+D +I VHHGAGAYICGEETALL Sbjct: 121 CYIYVRGEFIREREQLQAAIDEAYEAGLVGKNAAGSGWDFEIYVHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPANVGLYG PTTVNNVESIAV PTILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGAPTTVNNVESIAVAPTILRRGATWFSSLGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I EL+EKH GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 KLFCISGHVNRPCNVEEEMGIPLRELLEKHAGGVRGGWDNLLAVIPGGSSVPLLPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKNVQSGLGTAAVIVMDKSTDVIKAIARLSAFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 RVMERLV G A+ +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR IEERI Sbjct: 361 RVMERLVAGDAEVQEIDMLLDVTKRVEGHTICALGDAAAWPVQGLIRHFRGTIEERI 417 >gi|319782986|ref|YP_004142462.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168874|gb|ADV12412.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 434 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 317/421 (75%), Positives = 366/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL+ +M+RG WDN I+ KGR+WI+NE+KASGLRGRGGAGF Sbjct: 1 MLGDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQ A++E Y + L+G N+ GYD DI +HHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQRAIEEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+ Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G AQKREID+L +V+K IEG TICALGDAAAWPIQGL+++FR +E RID++ Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|288856265|ref|NP_001165788.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Nasonia vitripennis] Length = 472 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 267/421 (63%), Positives = 321/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W +IL+KG DWIINEVK SGLRGRGGAGF Sbjct: 45 LKDEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEILDKGADWIINEVKVSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+N DE EPGTCKDR+I+RH+PH LIEGC+IA A+GA A Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLIEGCLIAGRAMGACAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + Q A+ E Y +GLLG N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNTQVAIAEAYQAGLLGKNACGSGYDFDVFVQRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV P I RRG SW++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPAICRRGGSWFASFGRPRNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL +IPGGSS P +P Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGIIPGGSSTPVIPKHICDT 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L + S GTAA+IVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 VLMDYDDLVRVQSSFGTAAIIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGIAWMYK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ + Sbjct: 405 IMQRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIESRMLNFK 464 Query: 421 R 421 + Sbjct: 465 K 465 >gi|48097536|ref|XP_391916.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Apis mellifera] Length = 469 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 268/421 (63%), Positives = 323/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +I+EKG DWIINE+K SGLRGRGGAGF Sbjct: 45 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVEKGADWIINEIKVSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 105 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD DI V GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACGSGYDFDIFVQRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + + GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 VLLDFDDLVRVQTSFGTAAVIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGISWMYK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE RI Q+ Sbjct: 405 IMRRFVQGQAEVHEIDMLWELTKQIEMHTICALADGAAWPVQGLIRHFRPEIEARIAQHK 464 Query: 421 R 421 + Sbjct: 465 Q 465 >gi|254294097|ref|YP_003060120.1| NADH dehydrogenase I subunit F [Hirschia baltica ATCC 49814] gi|254042628|gb|ACT59423.1| NADH-quinone oxidoreductase, F subunit [Hirschia baltica ATCC 49814] Length = 436 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 290/421 (68%), Positives = 344/421 (81%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG SL + RG W++ ++++ G +WI +++K SGLRGRGGAGF Sbjct: 1 MLLDKDRIFTNLYGHHDWSLEGAKQRGAWNSTKELMQFGPEWICDQIKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+FMPK DRPHYLVVNADESEPGTCKDRDIMRH+PH LIEGC+IAS+A+ A+ Sbjct: 61 PTGLKWTFMPKEVKDRPHYLVVNADESEPGTCKDRDIMRHDPHLLIEGCLIASYAMRANT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+I ERE LQ A++E Y +GL+G N+ G+D D+ VHHGAGAYICGEETALL Sbjct: 121 CYIYLRGEYIFERERLQQAINEAYKAGLIGKNACGSGWDFDLHVHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W+ FGR+NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGAGWFKKFGRDNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+ISGHVN PC VEE MSI L+E HCGG+RGGW+NL AVIPGGSSVP +P Sbjct: 241 KVFAISGHVNRPCNVEEEMSIPLKTLLETHCGGVRGGWENLKAVIPGGSSVPMIPKDICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVMD+STD+++AI RL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDALREVQSGLGTAAVIVMDQSTDVVRAIARLAYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+VKG A+ EID+L +VS IEG TICALGDAAAWP+QGLI++FR IEERI Y Sbjct: 361 RVLTRMVKGEAEASEIDMLLDVSYQIEGHTICALGDAAAWPVQGLIRHFRSEIEERISSY 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|288958984|ref|YP_003449325.1| NADH dehydrogenase I chain F [Azospirillum sp. B510] gi|288911292|dbj|BAI72781.1| NADH dehydrogenase I chain F [Azospirillum sp. B510] Length = 429 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 295/421 (70%), Positives = 337/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L + RG WDN IL GR+WII +VK SGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNLYGFQDFGLDGARKRGDWDNTASILANGREWIIEQVKQSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK +D+P YLV+NADE EPGTCKDRDI+RH+PH LIEGC+IA FAIGA Sbjct: 61 STGMKWSFMPKNVTDKPVYLVINADEGEPGTCKDRDILRHDPHKLIEGCLIAGFAIGASA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE YA+GL+G N+ GYD D+ +H GAGAYICGEETAL+ Sbjct: 121 CYIYIRGEFYNEGSNVQRAIDEAYAAGLIGKNACGTGYDYDVYIHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPR KPPFPA GLY CPTTVNNVESIAVVPTILRRGASW++G GR N GT Sbjct: 181 ESIEGKKGQPRNKPPFPAQAGLYSCPTTVNNVESIAVVPTILRRGASWFAGLGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I ELIEKH GG+RGGWDNLL +IPGGSSVP LP Sbjct: 241 KLFCISGHVNNPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLGIIPGGSSVPVLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVMD+STDI+KAI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 TVLMDFDSLREVQSGLGTAAVIVMDKSTDIVKAIARLSSFYAHESCGQCTPCREGTGWMS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+R+V G A+ EID+L +V+K +EG TICALGDAAAWPIQGL ++FRP +E RI Y Sbjct: 361 RVMQRMVTGNARLEEIDMLLQVTKQVEGHTICALGDAAAWPIQGLFRHFRPEVERRIQAY 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|114327961|ref|YP_745118.1| NADH dehydrogenase I subunit F [Granulibacter bethesdensis CGDNIH1] gi|114316135|gb|ABI62195.1| NADH-quinone oxidoreductase chain F [Granulibacter bethesdensis CGDNIH1] Length = 438 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 293/422 (69%), Positives = 343/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L +++RG WD IL +GRD II ++K SGLRGRGGAGF Sbjct: 1 MLNDRDRIFTNLYGEHDWGLKGALARGDWDGTAAILARGRDAIIEDIKISGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PH L+EGC+IA+FA+GAH Sbjct: 61 PTGMKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPHKLVEGCLIAAFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IYVRGEF E LQAA+D+ Y +GL+G N+ G+D D+ VH GAGAYICGEETAL+ Sbjct: 121 AYIYVRGEFYNESCHLQAAIDQAYEAGLIGKNACGSGWDFDLYVHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++ GR N GT Sbjct: 181 ESIEGKKGMPRLKPPFPAGVGLYGCPTTVNNVESIAVCPTILRRGGAWFASLGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLFSISGHVN PC VEE + I EL+E++ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 KLFSISGHVNKPCNVEEELGIPLRELLERYAGGVRGGWDNLLAVIPGGSSVPLLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 DVLMDFDSLREQRSGLGTAAVIVMDKSTDVIKAIARLSHFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M R+V+G A EID+L +V++ +EG TICALGDAAAWP+QGLI++FRP+IE+RI Y Sbjct: 361 RIMNRMVEGRADLEEIDMLEQVTRQVEGHTICALGDAAAWPVQGLIRHFRPVIEDRIRAY 420 Query: 420 HR 421 + Sbjct: 421 KQ 422 >gi|158423296|ref|YP_001524588.1| NADH dehydrogenase I subunit F [Azorhizobium caulinodans ORS 571] gi|158330185|dbj|BAF87670.1| NADH-quinone oxidoreductase F subunit protein [Azorhizobium caulinodans ORS 571] Length = 433 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 308/423 (72%), Positives = 354/423 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + L ++ RG+WD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGYEDSGLKGALKRGNWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH Sbjct: 61 STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE++RERE L+AA+DE Y +GL+G N+ GY D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYVRERERLEAAIDEAYDAGLIGKNNIHGYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV P ILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPEILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF I GHVN PC VE++MSITF EL+EKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 LFGILGHVNTPCVVEDAMSITFRELVEKHGGGIRGGWDNLLAIIPGGASCPVVPAAACED 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 I+D+DGL+ + S GTA V+VMD+STDI++AI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 LILDFDGLRAVKSSFGTAGVLVMDKSTDIVRAIARISYFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ +G AQKREID L EV+ IEG TICALGDAAAWP+QGLI+NFR IE+RIDQY Sbjct: 361 VLNRMAEGRAQKREIDQLLEVTTQIEGHTICALGDAAAWPVQGLIRNFRHEIEKRIDQYA 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|148255908|ref|YP_001240493.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. BTAi1] gi|146408081|gb|ABQ36587.1| NADH dehydrogenase subunit F [Bradyrhizobium sp. BTAi1] Length = 441 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 308/420 (73%), Positives = 348/420 (82%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL L + RG WD +++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGLHDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G N+ G+ D+ V HGAGAYICGEETALL Sbjct: 121 ACYIYVRGEFIRERERLQAAIDQAYEANLIGKNNIHGWPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420 >gi|304319950|ref|YP_003853593.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503] gi|303298853|gb|ADM08452.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503] Length = 453 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 293/420 (69%), Positives = 340/420 (80%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL+ L + RG W+ IL+ G DW+I +VK SGLRGRGGAGF Sbjct: 22 MLQDKDRIFTNLYGLKDPFLEGAKDRGAWNGTKDILDMGIDWVIQQVKDSGLRGRGGAGF 81 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 82 PTGLKWSFMPKEVGERPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMRAHA 141 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE LQ A+DE YA+ L+G ++ GYD D+ + HGAGAYICGEETALLE Sbjct: 142 CYIYIRGEYIFEREQLQKAIDEAYAAKLIGKDNVHGYDFDLYLSHGAGAYICGEETALLE 201 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTI+RRGA W+ FGRENN GTK Sbjct: 202 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTIIRRGADWFKRFGRENNHGTK 261 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F ISGHVN PC VEE MSI LI+ HCGG+RGGWDNL AVIPGGSSV CLP Sbjct: 262 VFCISGHVNKPCNVEEEMSIPLKTLIDTHCGGVRGGWDNLKAVIPGGSSVRCLPKSICDD 321 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+E SGLGTAAVIVMD+STD++KAI R++ FYKHESCGQCTPCREGTGWM R Sbjct: 322 VLMDFDALREHKSGLGTAAVIVMDKSTDMVKAIARIAHFYKHESCGQCTPCREGTGWMWR 381 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ +G A+ EID L +V+ +EG TICALGDAAAWP+QGLI++FR IEE+I Y Sbjct: 382 VLVRMSRGEAEMWEIDKLLDVAGQVEGHTICALGDAAAWPVQGLIQHFRHEIEEKITAYR 441 >gi|27380023|ref|NP_771552.1| NADH dehydrogenase I subunit F [Bradyrhizobium japonicum USDA 110] gi|27353177|dbj|BAC50177.1| NADH ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum USDA 110] Length = 441 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 305/420 (72%), Positives = 345/420 (82%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG WD I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFKNLYGLHDWGLEGARRRGAWDGTKNIIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASCAMNAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ G+ DI V HGAGAYICGEETALL Sbjct: 121 ACYIYVRGEFIREREHLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 >gi|84502613|ref|ZP_01000732.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis HTCC2597] gi|84389008|gb|EAQ01806.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis HTCC2597] Length = 430 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 318/422 (75%), Positives = 369/422 (87%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + RGHWD I++KGRDWII+++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGMHDRTLQGARDRGHWDGTADIIKKGRDWIIDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG+N +K G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGANAAKSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGRENN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRENNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI Sbjct: 361 MRVMDRLVKGEASVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRIKH 420 Query: 419 YH 420 Sbjct: 421 KR 422 >gi|193587168|ref|XP_001946240.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Acyrthosiphon pisum] Length = 482 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 279/423 (65%), Positives = 329/423 (77%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L ++ RG W +IL KG D+IINEVK SGLRGRGGAGF Sbjct: 53 LSDSDRIFTNLYGRHDWQLKGALKRGDWYKTKEILIKGTDYIINEVKTSGLRGRGGAGFP 112 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A A+GA A Sbjct: 113 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGACAA 172 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ VH GAGAYICGEETAL+E Sbjct: 173 YIYIRGEFYNEASNLQQAICEAYQAGLIGKNACNSGYDFDVFVHRGAGAYICGEETALIE 232 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W+ G GR N GTK Sbjct: 233 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFLGLGRPRNSGTK 292 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GGI GGWDNLLAVIPGGSS P +P Sbjct: 293 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGIIGGWDNLLAVIPGGSSTPLIPKHVCET 352 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DGL + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG WM + Sbjct: 353 AIMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 412 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R+ +Y Sbjct: 413 IMYRFVDGQAQSSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELECRMKKYQ 472 Query: 421 RCN 423 N Sbjct: 473 EQN 475 >gi|220924010|ref|YP_002499312.1| NADH dehydrogenase subunit I F [Methylobacterium nodulans ORS 2060] gi|219948617|gb|ACL59009.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium nodulans ORS 2060] Length = 433 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 301/423 (71%), Positives = 351/423 (82%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYG L + RG WD +LE+GRDWI+ E+K SGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGFHSPGLDAARKRGAWDGTKFLLEQGRDWIVEEMKRSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE++ E+ +LQ AVDE Y + L+G ++ GY D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGQDNVHGYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV ILRRGA W++G GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAEWFAGIGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLL VIPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLCVIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ + SGLGTAAV+V+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGLQSGLGTAAVMVLDKSTDIVSAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRYS 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|170742516|ref|YP_001771171.1| NADH dehydrogenase I subunit F [Methylobacterium sp. 4-46] gi|168196790|gb|ACA18737.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium sp. 4-46] Length = 433 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 305/423 (72%), Positives = 355/423 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYG L + RG WD +LE+GRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGFHSPGLDAARRRGAWDGTKFLLEQGRDWIIDEMKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE++ E+ +LQ AVDE Y + L+G ++ GY D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGPDNVHGYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV ILRRGA+W+SG GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAAWFSGIGRPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIAD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D++TDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVLDKTTDIVAAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRYS 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|146341108|ref|YP_001206156.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. ORS278] gi|146193914|emb|CAL77931.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Bradyrhizobium sp. ORS278] Length = 441 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 309/420 (73%), Positives = 349/420 (83%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGLQ L + RG WD +++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFTNLYGLQDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH Sbjct: 61 PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ G+ DI V HGAGAYICGEETALL Sbjct: 121 TCYIYVRGEFIRERERLQAAIDQAYEAKLVGKDNVHGWPFDIYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420 >gi|126729558|ref|ZP_01745371.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37] gi|126709677|gb|EBA08730.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37] Length = 432 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 315/422 (74%), Positives = 363/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + RGHWD ++EKGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLHDQDRIFTNLYGMHDRTLDGAKKRGHWDGTAGLIEKGRDWIIQEMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+ ASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLFASFAMQAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQ A+DE Y +GL+G N + G+D +I +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQRAIDEAYDAGLVGPNAAGSGWDFEIFLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+ +M+ Sbjct: 241 KLFAVSGHVNKPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A + EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEADEEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|145354210|ref|XP_001421384.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581621|gb|ABO99677.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 449 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 292/423 (69%), Positives = 345/423 (81%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +M RG W N ++E G DWII+E+KASGLRGRGGAGF Sbjct: 21 LKDQDRIFTNLYGKHDPFLKGAMKRGDWHNTKSLVELGADWIISEMKASGLRGRGGAGFP 80 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMP+V RP+YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A A Sbjct: 81 SGLKWSFMPRVSDGRPNYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 140 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A+ ECYA+G LG N+ G D D+ +H+GAGAYICGEETAL+E Sbjct: 141 YIYIRGEYVNERLALERALAECYAAGYLGKNACGSGMDFDVNIHYGAGAYICGEETALIE 200 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK Sbjct: 201 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 260 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGWDNLLAVIPGGSSVP +P Sbjct: 261 LFCISGHVNNPCTVEEEMSIPLRDLIEKHCGGVRGGWDNLLAVIPGGSSVPLIPKNVCED 320 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 321 VLMDFDSLKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTSWLYN 380 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R+VKG A+ EID L E++K IEG TICALGDAAAWPIQG+I++FRPL+EERI Q+ Sbjct: 381 IMQRMVKGDARLEEIDTLQELTKQIEGHTICALGDAAAWPIQGVIRHFRPLLEERISQFS 440 Query: 421 RCN 423 Sbjct: 441 SSP 443 >gi|73982785|ref|XP_864381.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 7 [Canis familiaris] Length = 457 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 28 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 88 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 147 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 267 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 447 Query: 421 R 421 + Sbjct: 448 Q 448 >gi|281353395|gb|EFB28979.1| hypothetical protein PANDA_010233 [Ailuropoda melanoleuca] Length = 440 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 11 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 71 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 130 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 131 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 190 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 191 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 250 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 251 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 310 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 311 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 370 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 371 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 429 >gi|298291842|ref|YP_003693781.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506] gi|296928353|gb|ADH89162.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506] Length = 435 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 300/423 (70%), Positives = 348/423 (82%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG L + RG WD +L+ GRD+II +KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGHHDWGLDGARKRGSWDGTKLLLDAGRDFIIEHMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PH L+EGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKNNDGRPHYLVVNADESEPGTCKDREILRHDPHHLVEGCLIAGFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFI ERE LQAAVD+ Y +GL+G N+ G+D DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIVEREHLQAAVDQAYEAGLIGKNNVHGWDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W++G GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE+M I F ELIEKH GG+RGGWDNLLA+IPGG+S P +PA Q Sbjct: 241 LFGISGHVNTPCIVEEAMGIPFKELIEKHGGGVRGGWDNLLAIIPGGASCPIIPADQCDD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DG + + S GTA V+VMD++TD++KAI R+S F++HESCGQCTPCREGTGWM R Sbjct: 301 LIMDFDGCRAVKSSFGTAGVLVMDKTTDVVKAIARISYFFRHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V++R+V G AQKREIDLL +V+ +EG TICALGDAAAWP+QGLI++FR IE RIDQY Sbjct: 361 VLDRMVAGRAQKREIDLLLQVTTQVEGHTICALGDAAAWPVQGLIRHFRGEIERRIDQYA 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|194218547|ref|XP_001917609.1| PREDICTED: similar to NADH dehydrogenase [Equus caballus] Length = 464 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQSGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMHRF 453 >gi|159043865|ref|YP_001532659.1| NADH dehydrogenase subunit I F [Dinoroseobacter shibae DFL 12] gi|157911625|gb|ABV93058.1| NADH-quinone oxidoreductase, F subunit [Dinoroseobacter shibae DFL 12] Length = 433 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 314/422 (74%), Positives = 365/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L+ + RGHWD DK+++ GRD I+ +K SGLRGRGGAGF Sbjct: 1 MLQDQDRIFTNIYGMHDRTLAGARKRGHWDGTDKLIQMGRDDIVKIMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGE+IRERE+LQAA+DE Y +GLLG N + G+D D+ + HGAGAYICGEETAL+ Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYEAGLLGKNAAGSGWDFDLYLTHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAQFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|114799778|ref|YP_760453.1| NADH dehydrogenase I subunit F [Hyphomonas neptunium ATCC 15444] gi|114739952|gb|ABI78077.1| NADH-quinone oxidoreductase, F subunit [Hyphomonas neptunium ATCC 15444] Length = 435 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 297/420 (70%), Positives = 348/420 (82%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL L + RG W ++LE+G DWI N++KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGLHSPDLEAAKKRGAWHLTREMLEQGPDWICNQIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+FMPK DRPHYLVVNADESEPGTCKDR+I+RH+PH LIEGC++AS A+ AH Sbjct: 61 PTGLKWTFMPKEVRDRPHYLVVNADESEPGTCKDREILRHDPHLLIEGCMVASRAMRAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGE+I ER +L+ AV E Y + L+G ++ G+D D+ VHHGAGAYICGEETALLE Sbjct: 121 CYVYIRGEYINERHALEKAVKEAYEAKLIGKDNVNGWDFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV PTILRRGA W++GFGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAPTILRRGAQWFAGFGRPNNAGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE MSITF +LIE HCGGIRGGW+NL AVIPGGSSVP +PA Q+ Sbjct: 241 LFCISGHVNTPCNVEEEMSITFRDLIETHCGGIRGGWENLKAVIPGGSSVPMVPAEQIMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+ TD+I+AI RL+ FYKHESCGQCTPCREGTGWM R Sbjct: 301 AHMDFDTLRDLKSGLGTAAVIVMDKQTDLIRAIARLAYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+ +G A+ EID L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI QY Sbjct: 361 VLERMARGEAEHDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRHEIEDRITQYR 420 >gi|94468934|gb|ABF18316.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit [Aedes aegypti] Length = 486 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 60 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG W++ FGR N GTK Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL +IPGGSS P +P Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM + Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G + EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479 Query: 421 R 421 + Sbjct: 480 Q 480 >gi|19920794|ref|NP_608987.1| CG9140 [Drosophila melanogaster] gi|7297065|gb|AAF52334.1| CG9140 [Drosophila melanogaster] gi|15291595|gb|AAK93066.1| GM14163p [Drosophila melanogaster] gi|220945776|gb|ACL85431.1| CG9140-PA [synthetic construct] gi|220955472|gb|ACL90279.1| CG9140-PA [synthetic construct] Length = 474 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469 Query: 421 R 421 + Sbjct: 470 K 470 >gi|639834|emb|CAA58823.1| NADH dehydrogenase [Solanum tuberosum] Length = 487 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 287/419 (68%), Positives = 337/419 (80%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRAKAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER+SLQ A E Y +GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERKSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI+ ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 298 LFCISGHVNKPCTVEEEMSISLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI ++ Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIREH 476 >gi|330843279|ref|XP_003293586.1| ubiquinone oxidoreductase [Dictyostelium purpureum] gi|325076073|gb|EGC29892.1| ubiquinone oxidoreductase [Dictyostelium purpureum] Length = 477 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 282/420 (67%), Positives = 334/420 (79%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +M RG W I++KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 50 LKDQDRIFTNLYGEHDVYLKGAMLRGDWYRTKDIIDKGKDWILKEMMASGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RPHYLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A A Sbjct: 110 SGLKWSFMPKVLKGRPHYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMKACAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + L+ A++E Y +GL+G N+ GY D+ VH GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFHYEAKVLEQAIEEAYKAGLIGENASGTGYKFDVYVHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++GFGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNAGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI ELI+KHCGG+ GGW+NL VIPGGSSVP LP Sbjct: 290 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWENLKGVIPGGSSVPVLPKNICDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L++ SGLGTAAVIVM++ TD+IKAI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 350 VLMDFDDLRKHRSGLGTAAVIVMNKETDMIKAIARLSKFYKHESCGQCTPCREGTGWLWD 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + ERLV G A+ EID+L E+SK IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ Sbjct: 410 ITERLVTGDAKLDEIDMLEEISKQIEGHTICALGDAAAWPVQGLIRSFRPEIEDRIKQFQ 469 >gi|255547796|ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] gi|223546006|gb|EEF47509.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] Length = 486 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 288/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERINLERARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 298 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 358 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 475 >gi|254452337|ref|ZP_05065774.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 238] gi|198266743|gb|EDY91013.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 238] Length = 428 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 313/421 (74%), Positives = 361/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + +RGHWD I++KGR WI++++KASGLRGRGGAGF Sbjct: 2 MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRAWIVDQMKASGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 62 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DECY +G++G N+ K G+D DI +HHGAGAYICGEETALL Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYDAGMVGKNACKSGWDFDIYLHHGAGAYICGEETALL 181 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIA VPTILRRG W++GFGR NN GT Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIATVPTILRRGPDWFAGFGRPNNSGT 241 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL++ISGHVN PC VEESMSI F+ELIEKHCGG+RGGWDNL AVIPGGSSVP + MR Sbjct: 242 KLYAISGHVNNPCVVEESMSIPFEELIEKHCGGVRGGWDNLKAVIPGGSSVPMVRGENMR 301 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+DGLKE GS LGTAAVIVMD++TD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 302 DAIMDFDGLKEKGSSLGTAAVIVMDKNTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 361 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLVKG A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 362 RVMDRLVKGDADVSEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRIAHK 421 Query: 420 H 420 Sbjct: 422 R 422 >gi|154248547|ref|YP_001419505.1| NADH dehydrogenase I subunit F [Xanthobacter autotrophicus Py2] gi|154162632|gb|ABS69848.1| NADH-quinone oxidoreductase, F subunit [Xanthobacter autotrophicus Py2] Length = 433 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 307/423 (72%), Positives = 356/423 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGLQ L + +RG+WD ILEKGRDWIINE+K SGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLQDFGLKGARARGNWDGTKAILEKGRDWIINEMKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH Sbjct: 61 STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+I ER+ LQAA+DE Y +GL+G ++ Y D+ VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIFERKRLQAAIDEAYDAGLIGKSNIHDYPFDLYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFS++GHVN PC VEE+MSI F EL++KH GG+RGGWDNLL +IPGG+S P +PA Q Sbjct: 241 LFSLAGHVNTPCVVEEAMSIPFRELVDKHGGGVRGGWDNLLGIIPGGASCPVIPAEQCAD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DG + + S LGTA V+VMD+STDIIKAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 301 LIMDFDGTRAVKSSLGTAGVLVMDKSTDIIKAIARISAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ +G AQKREID+L EV+ IEG TICALGDAAAWP+QGLI+++R +IEERIDQY Sbjct: 361 VVNRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHYRHVIEERIDQYA 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|13471402|ref|NP_102968.1| NADH dehydrogenase I subunit F [Mesorhizobium loti MAFF303099] gi|14022144|dbj|BAB48754.1| NADH-ubiquinone dehydrogenase chain F 1 [Mesorhizobium loti MAFF303099] Length = 434 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 313/421 (74%), Positives = 364/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL KSL+ +M+RG WDN I+ KGR+WI+NE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE+LQ A+DE Y + L+G + GYD D+ +HHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKGNTSGYDFDVYMHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+ Sbjct: 241 LFCVSGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR +E RID++ Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|302383053|ref|YP_003818876.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides ATCC 15264] gi|302193681|gb|ADL01253.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides ATCC 15264] Length = 437 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 299/426 (70%), Positives = 346/426 (81%), Gaps = 2/426 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGLQ L + +RG W+ +L+ GRDW+I VK SGLRGRGGAGF Sbjct: 4 LLEDKDRIFTNLYGLQDWGLEGAKNRGCWNATKDMLDMGRDWLITNVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ERE ++AAV + Y + L+G N+ G+D D+ +HHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKNNIHGWDFDVYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAEWFAGFGRPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L SISGHVN PC VEE+MSI +LIE HCGG+RGGWDNL A+IPGG SVP + Sbjct: 244 LMSISGHVNRPCNVEEAMSIPLRQLIEDHCGGVRGGWDNLKAIIPGGVSVPLITREMSEV 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L+EM SGLGTAAV+VMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 304 ALMDFDSLREMKSGLGTAAVVVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 V+ER+ G A EID+L EVS IEG TICALGDAAAWP+QGLI++FR IE+RI QY Sbjct: 364 VLERMAVGEADPGEIDMLLEVSTQIEGHTICALGDAAAWPVQGLIRHFRHEIEDRISQYR 423 Query: 420 -HRCNF 424 R NF Sbjct: 424 TRRANF 429 >gi|311247118|ref|XP_003122486.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Sus scrofa] Length = 464 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+ Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 453 >gi|322791265|gb|EFZ15789.1| hypothetical protein SINV_06284 [Solenopsis invicta] Length = 469 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 266/423 (62%), Positives = 322/423 (76%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +MSRG W +I+EKG DWIINE+K SGLRGRGGAGF Sbjct: 44 LADQDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIEKGADWIINEIKVSGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 104 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + Q A+ E Y +GL+G N+ GYD DI V GAGAYICGEETAL+E Sbjct: 164 YIYIRGEFYNEASNTQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 223 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR +W++ FGR N GTK Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNTGTK 283 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 284 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 343 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLMSFYKHESCGQCTPCREGISWMHK 403 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ + Sbjct: 404 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKEQK 463 Query: 421 RCN 423 R Sbjct: 464 RAT 466 >gi|157116636|ref|XP_001658587.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes aegypti] gi|108876370|gb|EAT40595.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes aegypti] Length = 487 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 60 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG W++ FGR N GTK Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL +IPGGSS P +P Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM + Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G + EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479 Query: 421 R 421 + Sbjct: 480 Q 480 >gi|115502493|sp|Q0MQI5|NDUV1_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|111661793|gb|ABH12158.1| mitochondrial complex I subunit NDUFV1 [Gorilla gorilla] Length = 464 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+SGFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFSGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGW+NLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWENLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|296218952|ref|XP_002755638.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Callithrix jacchus] Length = 464 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454 Query: 421 R 421 + Sbjct: 455 Q 455 >gi|84686436|ref|ZP_01014330.1| NADH-quinone oxidoreductase, F subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665619|gb|EAQ12095.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium HTCC2654] Length = 433 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 313/422 (74%), Positives = 366/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + RGHWD I++KGRDWI++++KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLKGAQMRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N + G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++ FGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFASFGRKNNEGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A+MD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAVMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|149184631|ref|ZP_01862949.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21] gi|148831951|gb|EDL50384.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21] Length = 430 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 298/422 (70%), Positives = 352/422 (83%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L + +RG WD+ ++ +G D II EVKASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGFQNWGLKAAEARGDWDDTKSLIARGHDNIIEEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH LIEG +++ +A+ A Sbjct: 61 PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVSGYAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE E LQAA+DE Y +GL+G N+ K GYD D+ +H GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAEVLQAAIDEAYDAGLIGKNASKSGYDFDVFLHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PC VEE++SI F ELIEKHCGGI GG DNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVNKPCVVEEALSIPFSELIEKHCGGITGGKDNLLAVIPGGSSVPLVPAEQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+DGLK++GSGLGTA VIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 WDAPMDFDGLKDLGSGLGTAGVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+MERL G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++ Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420 Query: 419 YH 420 ++ Sbjct: 421 HN 422 >gi|66805535|ref|XP_636489.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4] gi|74852419|sp|Q54I90|NDUV1_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|60464845|gb|EAL62961.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4] Length = 479 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +++RG W I++KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 51 LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110 Query: 62 TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A Sbjct: 111 SGLKWSFMPKTTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E + L+ A+DE Y +GL+G N+ GY D+ VH GAGAYICGEETAL+ Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++ FGR N GT Sbjct: 231 ESIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNL VIPGGSSVP LP Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L++ SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +RLV G A+ EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470 Query: 420 H 420 Sbjct: 471 Q 471 >gi|226532265|ref|NP_001148767.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] gi|195621992|gb|ACG32826.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] Length = 504 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 285/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L ++ RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E+RI + Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELEKRIRE 493 >gi|311247120|ref|XP_003122487.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 2 [Sus scrofa] Length = 455 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 26 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 85 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 86 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 145 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 265 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+ Sbjct: 386 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 444 >gi|315499794|ref|YP_004088597.1| NADH-quinone oxidoreductase, f subunit [Asticcacaulis excentricus CB 48] gi|315417806|gb|ADU14446.1| NADH-quinone oxidoreductase, F subunit [Asticcacaulis excentricus CB 48] Length = 437 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 301/420 (71%), Positives = 343/420 (81%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RG W+ IL GRDWII VK SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGRDWIITNVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ERE L+AA+ + Y + L+G N+ G+D DI VHHG GAYICGEETALLE Sbjct: 124 CYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGGGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA+W++GFG +NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAAWFAGFGAQNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+ +GSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 304 MPMDFDTLRGLGSGLGTAAVIVMDKSTDLIKAIARLSYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+ KG A +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR IE+RI Y Sbjct: 364 VMERMAKGDADPKEIDILLDVTKQVEGHTICALGDAAAWPVQGLIRHFRHEIEDRIALYR 423 >gi|194860015|ref|XP_001969499.1| GG10139 [Drosophila erecta] gi|190661366|gb|EDV58558.1| GG10139 [Drosophila erecta] Length = 474 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGVWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469 Query: 421 R 421 + Sbjct: 470 K 470 >gi|39936010|ref|NP_948286.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris CGA009] gi|192291665|ref|YP_001992270.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris TIE-1] gi|39649864|emb|CAE28386.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris CGA009] gi|192285414|gb|ACF01795.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris TIE-1] Length = 441 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 298/422 (70%), Positives = 346/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL +L + RG W+ I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWTLKGARRRGGWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ GY D+ V HGAGAYICGEETALL Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRANNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|195473699|ref|XP_002089130.1| GE18950 [Drosophila yakuba] gi|194175231|gb|EDW88842.1| GE18950 [Drosophila yakuba] Length = 474 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W++GFGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469 Query: 421 R 421 + Sbjct: 470 K 470 >gi|20149568|ref|NP_009034.2| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial isoform 1 precursor [Homo sapiens] gi|20455501|sp|P49821|NDUV1_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH dehydrogenase flavoprotein 1; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|3095113|gb|AAC39722.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens] gi|3136152|gb|AAC39750.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens] gi|5138912|gb|AAD40373.1| 51kDa subunit of NADH dehydrogenase [Homo sapiens] gi|15990511|gb|AAH15645.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Homo sapiens] gi|48145595|emb|CAG33020.1| NDUFV1 [Homo sapiens] gi|119595061|gb|EAW74655.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_d [Homo sapiens] gi|119595062|gb|EAW74656.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_d [Homo sapiens] gi|123993121|gb|ABM84162.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic construct] gi|124000113|gb|ABM87565.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic construct] gi|307684728|dbj|BAJ20404.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic construct] gi|311347578|gb|ADP90734.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347580|gb|ADP90735.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347582|gb|ADP90736.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347584|gb|ADP90737.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347586|gb|ADP90738.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347588|gb|ADP90739.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347590|gb|ADP90740.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347592|gb|ADP90741.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347594|gb|ADP90742.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347596|gb|ADP90743.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347598|gb|ADP90744.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347600|gb|ADP90745.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347602|gb|ADP90746.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347604|gb|ADP90747.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347606|gb|ADP90748.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347608|gb|ADP90749.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347610|gb|ADP90750.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347612|gb|ADP90751.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347614|gb|ADP90752.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347616|gb|ADP90753.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347618|gb|ADP90754.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347620|gb|ADP90755.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347622|gb|ADP90756.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347624|gb|ADP90757.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347626|gb|ADP90758.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347628|gb|ADP90759.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347630|gb|ADP90760.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347632|gb|ADP90761.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347634|gb|ADP90762.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347636|gb|ADP90763.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347638|gb|ADP90764.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347640|gb|ADP90765.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347642|gb|ADP90766.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347644|gb|ADP90767.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347646|gb|ADP90768.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347648|gb|ADP90769.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347650|gb|ADP90770.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347652|gb|ADP90771.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347654|gb|ADP90772.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] gi|311347656|gb|ADP90773.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo sapiens] Length = 464 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|170748473|ref|YP_001754733.1| NADH dehydrogenase I subunit F [Methylobacterium radiotolerans JCM 2831] gi|170654995|gb|ACB24050.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium radiotolerans JCM 2831] Length = 433 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 301/419 (71%), Positives = 352/419 (84%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYGL L + RG WD +LE+GRDWII E+KASGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLEQGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++A FA+ AH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLACFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ E+ +LQ AVDE YA+ L+G ++ Y DI VHHGAGAYICGEETAL+E Sbjct: 121 CYIYIRGEYVAEKHALQKAVDEAYAARLVGQSNVHDYPFDIYVHHGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV TILRRG +W++G G +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL IPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVAAITRISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM+R+ +G AQKREID+L+EV+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y Sbjct: 361 VMQRMTEGRAQKREIDMLFEVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419 >gi|153009746|ref|YP_001370961.1| NADH dehydrogenase I subunit F [Ochrobactrum anthropi ATCC 49188] gi|151561634|gb|ABS15132.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum anthropi ATCC 49188] Length = 435 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 315/421 (74%), Positives = 364/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG +K G+D+D++V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDVLVSHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC +EE + I F +LIEKH GGIRGGWDNLLAVIPGG+S P + M Sbjct: 241 LFQISGHVNTPCVIEEGLGIPFRDLIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG+++ S GT +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|239831691|ref|ZP_04680020.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium LMG 3301] gi|239823958|gb|EEQ95526.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium LMG 3301] Length = 435 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 318/421 (75%), Positives = 362/421 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL +M+RGHWDN ++EKGRDWII E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDRSLKGAMARGHWDNTSGLIEKGRDWIIEEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA A+GAH Sbjct: 61 PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGEF+RERE+LQAA+DECY +GLLG +K G+D+DI V HGAGAYICGEETALLE Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDIFVTHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + M Sbjct: 241 LFQISGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG+++ S GT +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|86137594|ref|ZP_01056171.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193] gi|85825929|gb|EAQ46127.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193] Length = 432 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 317/422 (75%), Positives = 362/422 (85%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + +RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLKGAQARGHWDGTSGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|115392085|ref|NP_001065293.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Pan troglodytes] gi|115502494|sp|Q0MQI6|NDUV1_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|111661791|gb|ABH12157.1| mitochondrial complex I subunit NDUFV1 [Pan troglodytes] Length = 464 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|332373616|gb|AEE61949.1| unknown [Dendroctonus ponderosae] Length = 473 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 267/425 (62%), Positives = 329/425 (77%), Gaps = 4/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DR+FTNLYG L +M RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 46 LADEDRVFTNLYGRHDWRLKGAMKRGDWYKTKEILLKGSDWIVNELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM + RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA AIGA A Sbjct: 106 TGMKWSFMNRPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAIGAKAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTVNNVE+IAV P+I RRG W++ FGR N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADVGVFGCPTTVNNVETIAVSPSICRRGGPWFASFGRTRNSGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI EL+E H GG++GGWDNLLA+IPGGSS P +P Sbjct: 286 LFNISGHVNRPCTVEEEMSIPLKELVEIHAGGVQGGWDNLLAIIPGGSSTPLIPKSVCED 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG WM + Sbjct: 346 VLMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGVNWMNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 ++ R V G A+ EID+L+E+SK IEGR+ICAL D AAWP+QGLI++FRP +E+R+ ++ Sbjct: 406 MIYRFVDGNAKPEEIDMLWEISKQIEGRSICALADGAAWPVQGLIRHFRPELEDRMRKFA 465 Query: 420 --HRC 422 +C Sbjct: 466 ESKQC 470 >gi|296218954|ref|XP_002755639.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 2 [Callithrix jacchus] Length = 455 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 26 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 86 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 145 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 386 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 445 Query: 421 R 421 + Sbjct: 446 Q 446 >gi|119595060|gb|EAW74654.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_c [Homo sapiens] Length = 457 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 28 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 88 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 147 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 267 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 446 >gi|254465162|ref|ZP_05078573.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium Y4I] gi|206686070|gb|EDZ46552.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium Y4I] Length = 432 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 321/422 (76%), Positives = 366/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + +RGHWD I+EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKARGHWDGTAGIIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y GLLG+N + G+D DI +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDQGLLGNNAAGSGWDFDIFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A+MD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DALMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIKNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|224110746|ref|XP_002315622.1| predicted protein [Populus trichocarpa] gi|222864662|gb|EEF01793.1| predicted protein [Populus trichocarpa] Length = 485 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 286/418 (68%), Positives = 335/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL L +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 57 LKDEDRIFTNVYGLHDPFLKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 116 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 117 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 176 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 177 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 236 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 237 SLEGKQGKPRLKPPFPANSGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 296 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 297 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 356 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 357 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 416 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 417 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 474 >gi|158299072|ref|XP_319184.4| AGAP010039-PA [Anopheles gambiae str. PEST] gi|157014192|gb|EAA13847.5| AGAP010039-PA [Anopheles gambiae str. PEST] Length = 472 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 278/421 (66%), Positives = 331/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 45 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEMKVSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 105 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 225 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGTWFASFGRTRNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GGIRGGWDNLL +IPGGSS P +P Sbjct: 285 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG WM + Sbjct: 345 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ QY Sbjct: 405 IMHRFVTGNARPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIESRMKQYE 464 Query: 421 R 421 + Sbjct: 465 Q 465 >gi|260656005|ref|NP_001159574.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial isoform 2 precursor [Homo sapiens] gi|14198176|gb|AAH08146.1| NDUFV1 protein [Homo sapiens] gi|119595058|gb|EAW74652.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_a [Homo sapiens] Length = 455 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 26 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 86 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 145 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 386 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 444 >gi|308510360|ref|XP_003117363.1| CRE-NUO-1 protein [Caenorhabditis remanei] gi|308242277|gb|EFO86229.1| CRE-NUO-1 protein [Caenorhabditis remanei] Length = 479 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M+RG W +I+ KG DWI+ E+K SGLRGRGGAGF Sbjct: 46 LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I A+GA A Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E Y +G LG + GY+ D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ + Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465 Query: 421 R 421 + Sbjct: 466 K 466 >gi|62897683|dbj|BAD96781.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa variant [Homo sapiens] Length = 464 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +G +G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGPIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|323138150|ref|ZP_08073223.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC 49242] gi|322396612|gb|EFX99140.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC 49242] Length = 434 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 315/420 (75%), Positives = 363/420 (86%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+D DRIFTNLYGL +SL+ + RG WDN +L KGRD II EVKASGLRGRGGAGF Sbjct: 1 MLSDSDRIFTNLYGLGDRSLAGARKRGQWDNTKALLAKGRDKIIEEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK RPHYLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH Sbjct: 61 STGLKWSFMPKDVDPRRPHYLVINADESEPGTCKDREIMRNDPHTLVEGALVASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFI ERE+LQ AVDE YA+ L+G N+ GY D+ VHHGAGAYICGEETAL+ Sbjct: 121 ACYIYVRGEFIAEREALQRAVDEAYAANLIGKNNVHGYPFDLYVHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG +W++G G+ NN GT Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGPNWFAGIGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLFSISGHVN PC VEE+MSI+F ELI+ HCGG+RGGWDNLLAVIPGGSSV C+PA Q+ Sbjct: 241 KLFSISGHVNRPCNVEEAMSISFRELIDTHCGGVRGGWDNLLAVIPGGSSVRCVPAHQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMY 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V+G A K+EID+L++VSK IEG TICALGDAAAWPIQGLI +FR +IE+RIDQY Sbjct: 361 RVVQRMVEGRANKKEIDMLFDVSKQIEGHTICALGDAAAWPIQGLITHFRDVIEQRIDQY 420 >gi|217979054|ref|YP_002363201.1| NADH dehydrogenase I subunit F [Methylocella silvestris BL2] gi|217504430|gb|ACK51839.1| NADH-quinone oxidoreductase, F subunit [Methylocella silvestris BL2] Length = 436 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 301/423 (71%), Positives = 355/423 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L +++RG WDN ++EKG+DWI+ E+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGFGDWGLKGALARGAWDNTKGLIEKGKDWILTEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + RP YLVVNADESEPGTCKDR+IMR++PH L+EGC +ASFA+ AH Sbjct: 61 PTGLKWSFMPKADAARPSYLVVNADESEPGTCKDREIMRNDPHLLVEGCFVASFAMEAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I E + L+AA+ + Y +GL+G ++ G+ DI VH GAGAYICGEETALLE Sbjct: 121 CYIYIRGEYILEADRLEAAIQQAYEAGLVGKDNIHGWPFDIYVHRGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNSGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PC VEE+MSI F ELI+KHCGG+RGG DNLLAVIPGGSSVPC+PA Q+ Sbjct: 241 LFCISGHVNKPCNVEEAMSIPFRELIDKHCGGVRGGSDNLLAVIPGGSSVPCVPAAQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+++ SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREGTGW+ R Sbjct: 301 AAMDFDTLRDLKSGLGTAAVIVMDKSTDIIRAIARLSYFYKHESCGQCTPCREGTGWLWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ +G AQKREID+L EV+ IEG TICALGDAAAWP+QGLI++FRP IE+RIDQY Sbjct: 361 VVTRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHFRPEIEKRIDQYA 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|160420036|dbj|BAF93481.1| NADH dehydrogenase flavoprotein 1 [Macaca fascicularis] Length = 464 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|163412|gb|AAA30661.1| NADH dehydrogenase [Bos taurus] Length = 490 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 61 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 120 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 121 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 180 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 181 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 240 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 241 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 300 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 301 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 360 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 361 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 420 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 421 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 476 >gi|163850512|ref|YP_001638555.1| NADH dehydrogenase I subunit F [Methylobacterium extorquens PA1] gi|218529209|ref|YP_002420025.1| NADH dehydrogenase I subunit F [Methylobacterium chloromethanicum CM4] gi|240137577|ref|YP_002962048.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) [Methylobacterium extorquens AM1] gi|254560048|ref|YP_003067143.1| NADH-quinone oxidoreductase subunit F [Methylobacterium extorquens DM4] gi|163662117|gb|ABY29484.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium extorquens PA1] gi|218521512|gb|ACK82097.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium chloromethanicum CM4] gi|240007545|gb|ACS38771.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) [Methylobacterium extorquens AM1] gi|254267326|emb|CAX23158.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) [Methylobacterium extorquens DM4] Length = 433 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 300/423 (70%), Positives = 348/423 (82%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYGL L + RG WD +L+ GRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLADQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLDMGRDWIIDEMKGSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ E+ +LQ AVDE Y + L+G ++ Y DI VHHGAGAYICGEETAL+E Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV TILRRG +W++G G +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + ITF ELI+KHCGG+RGGWDNLL IPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDKHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQYS 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|303278834|ref|XP_003058710.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459870|gb|EEH57165.1| predicted protein [Micromonas pusilla CCMP1545] Length = 468 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 287/417 (68%), Positives = 337/417 (80%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W N ++ G DWI+NE+KASGLRGRGGAGF Sbjct: 42 LKDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKDLMLMGPDWIVNEIKASGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A Sbjct: 102 SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A DE YA+G LG N+ G D DI +H+GAGAYICGEETAL+E Sbjct: 162 YIYIRGEYVNERLNLERARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W+S FGR+NN GTK Sbjct: 222 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGAEWFSSFGRKNNAGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 282 LFCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKKICEE 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 342 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYN 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 VMER+ KG A+ EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+ Sbjct: 402 VMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 458 >gi|316933898|ref|YP_004108880.1| NADH-quinone oxidoreductase subunit F [Rhodopseudomonas palustris DX-1] gi|315601612|gb|ADU44147.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris DX-1] Length = 441 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 298/422 (70%), Positives = 345/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL +L + RG W+ I++KGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWTLKGARRRGAWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ GY D+ V HGAGAYICGEETALL Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLYGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|126740382|ref|ZP_01756070.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6] gi|126718518|gb|EBA15232.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6] Length = 432 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 318/422 (75%), Positives = 362/422 (85%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L + +RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLKGAQTRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|268532110|ref|XP_002631183.1| C. briggsae CBR-NUO-1 protein [Caenorhabditis briggsae] gi|187036977|emb|CAP23643.1| CBR-NUO-1 protein [Caenorhabditis briggsae AF16] Length = 479 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 268/421 (63%), Positives = 325/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L + +RG W +I+ KG DWI+ E+K SGLRGRGGAGF Sbjct: 46 LKDSDRIFTNLYGRHDYRLKGAQARGDWYKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I A+GA A Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E Y +G LG + GY+ D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKSVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ + Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465 Query: 421 R 421 + Sbjct: 466 K 466 >gi|115502495|sp|Q0MQI4|NDUV1_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|111661795|gb|ABH12159.1| mitochondrial complex I subunit NDUFV1 [Pongo pygmaeus] Length = 464 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVNYPCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNYPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|188580280|ref|YP_001923725.1| NADH dehydrogenase I subunit F [Methylobacterium populi BJ001] gi|179343778|gb|ACB79190.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium populi BJ001] Length = 433 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 299/423 (70%), Positives = 348/423 (82%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTNLYG L + RG WD +LE GRDWII+E+K SGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNLYGQHSPGLDAAKKRGAWDGTKFLLEMGRDWIIDEMKGSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ E+ +LQ AVDE Y + L+G ++ Y DI VHHGAGAYICGEETAL+E Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV TILRRG +W++G G +NN GTK Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL IPGGSSVP +PA Q+ Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQYS 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|169868608|ref|XP_001840875.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea okayama7#130] gi|116498033|gb|EAU80928.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea okayama7#130] Length = 516 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 268/426 (62%), Positives = 334/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + +MSRG W +IL KG WII +K SGLRGRGGAGF Sbjct: 51 LKDQDRIFTNVYSRHDHGIKGAMSRGDWHKTKEILLKGDAWIIQTIKDSGLRGRGGAGFP 110 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A A+ A Sbjct: 111 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 170 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A++E YA+G +G N+ GYD D+ VH GAGAYICGEETA Sbjct: 171 NAAYIYIRGEFYQEASHVQQAINEAYAAGFIGKNACGSGYDFDVYVHRGAGAYICGEETA 230 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGR+ N Sbjct: 231 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRQRNE 290 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PC VEE MSI +LIEKHCGG+RGGWDNLL ++PGGSSVP +P Sbjct: 291 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVRGGWDNLLGIVPGGSSVPIIPKDV 350 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGT AVIVMD+STD+++AI R + FYKHESCGQCTPCREGT W Sbjct: 351 CAEVLMDFDSLKDAQTGLGTGAVIVMDKSTDVVRAISRFADFYKHESCGQCTPCREGTTW 410 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++M+R+V+G A +REID+L E++K IEGRTICALGDAAAWPIQGL+++FRP +E RI Sbjct: 411 MKKMMDRMVEGRAHQREIDMLLELTKQIEGRTICALGDAAAWPIQGLMRHFRPEVERRIA 470 Query: 418 QYHRCN 423 ++ N Sbjct: 471 EFQAAN 476 >gi|17531727|ref|NP_496376.1| NADH Ubiquinone Oxidoreductase family member (nuo-1) [Caenorhabditis elegans] gi|3874218|emb|CAA90435.1| C. elegans protein C09H10.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 479 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M+RG W +I+ KG DWI+ E+K SGLRGRGGAGF Sbjct: 46 LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I A+GA A Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E Y +G LG + GY+ D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ + Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465 Query: 421 R 421 + Sbjct: 466 K 466 >gi|85717024|ref|ZP_01047986.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A] gi|85696148|gb|EAQ34044.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A] Length = 441 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 300/420 (71%), Positives = 344/420 (81%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I++KGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVDKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A +GAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE LQAA+DE Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++ GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 >gi|83858409|ref|ZP_00951931.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633] gi|83853232|gb|EAP91084.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633] Length = 435 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 291/420 (69%), Positives = 341/420 (81%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RGHW+ +ILE+GRDWII+E+K SGLRGRGGAGF Sbjct: 4 LLQDKDRIFTNLYGRHDWRLEGAKQRGHWNATKEILEQGRDWIIDEMKKSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IASFA+ AH Sbjct: 64 PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRNDPQTLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E ++AA+ E Y + L+G ++ G+D D+ +HHGAGAYICGEETALLE Sbjct: 124 CYIYIRGEYQFELGRMEAAIKEAYDAKLIGKDNIHGWDFDLYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W++GFGRE N GTK Sbjct: 184 SLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGADWFAGFGREGNAGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FSISGHVN PC VEE MSI LIE HCGG+RGGWDNL AVIPGGSSVP LP Sbjct: 244 VFSISGHVNAPCNVEEVMSIPLKTLIETHCGGVRGGWDNLKAVIPGGSSVPLLPKEICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD++KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 304 VLMDFDALKEHRSGLGTAAVIVMDKSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V++R+ +G A+ EID L +V+ +EG TICALGDAAAWP+QGLI++FR IE+RI+ Y Sbjct: 364 VLDRMSRGEAETSEIDDLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRGEIEDRINNYR 423 >gi|307195432|gb|EFN77318.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Harpegnathos saltator] Length = 470 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 1/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLYG L ++SRG W +IL+KG DWIINE+K SGLRGRGGAGF Sbjct: 46 LSDQDRIFTNLYGRHDWRLKGAISRGDWHKTKEILDKGADWIINEIKVSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+NADE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 106 SGMKWSFMNKPSDGRPKYLVINADEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GY+ DI V GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYNFDIFVQRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RR +W++ FGR N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNHGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNL+ VIPGGSS P +P Sbjct: 286 LFNISGHVNKPCTVEEEMSIPLKELIERHAGGVIGGWDNLMGVIPGGSSTPVIPKSVCDT 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 346 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ Q Sbjct: 406 ILKRFVEGNAEMHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKQQK 465 Query: 421 RCNF 424 F Sbjct: 466 EVAF 469 >gi|73982783|ref|XP_851761.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 2 [Canis familiaris] Length = 460 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 273/421 (64%), Positives = 326/421 (77%), Gaps = 5/421 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG WDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 331 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 391 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 450 Query: 421 R 421 + Sbjct: 451 Q 451 >gi|548387|sp|P25708|NDUV1_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH dehydrogenase flavoprotein 1; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|109939909|gb|AAI18305.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Bos taurus] gi|296471573|gb|DAA13688.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Bos taurus] Length = 464 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450 >gi|260434174|ref|ZP_05788145.1| NADH oxidoreductase (quinone), f subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260418002|gb|EEX11261.1| NADH oxidoreductase (quinone), f subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 432 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 317/422 (75%), Positives = 364/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD ++ KGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTADLIAKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N + G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ ++GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRNDLGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A+ EID+L+EV+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLFEVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 RK 422 >gi|87200309|ref|YP_497566.1| NADH dehydrogenase I subunit F [Novosphingobium aromaticivorans DSM 12444] gi|87135990|gb|ABD26732.1| NADH dehydrogenase subunit F [Novosphingobium aromaticivorans DSM 12444] Length = 428 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 301/422 (71%), Positives = 350/422 (82%), Gaps = 2/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q +L+ + +RG WDN ++E+G+D II E+KASGLRGRGGAGF Sbjct: 3 LQDKDRIFTNVYGFQPWNLAAARARGDWDNTKALMERGQDAIIEEIKASGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A Sbjct: 63 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE ++L AAV E Y +GL+G N+ GYD D+ VH GAGAYICGEETA++ Sbjct: 123 AYIYIRGEYIREADTLFAAVQEAYDAGLIGKNASGSGYDFDVFVHRGAGAYICGEETAMI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGASW+S FGRENN+GT Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSSFGRENNKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE MSI F ELIEKHCGGIRGG DNLLAVIPGGSSVP +PA ++ Sbjct: 243 KLFQISGHVNRPCVVEEEMSIPFSELIEKHCGGIRGGKDNLLAVIPGGSSVPLVPAAEIW 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMERL G A EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + Sbjct: 363 RVMERLRTGDADVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAEN 422 Query: 420 HR 421 R Sbjct: 423 AR 424 >gi|281203657|gb|EFA77854.1| ubiquinone oxidoreductase [Polysphondylium pallidum PN500] Length = 481 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 279/420 (66%), Positives = 331/420 (78%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L + RG W I+ KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 54 LKDQDRIFTNLYGEHDVYLKGAEKRGDWYRTKDIIGKGKDWILKEMMASGLRGRGGAGFP 113 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A A Sbjct: 114 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMRACAA 173 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + L+ A+DE Y +G LG+N+ GY D+ VH GAGAYICGEETAL+E Sbjct: 174 YIYIRGEFHHEAKVLEKAIDEAYKAGYLGANACGTGYHFDVYVHRGAGAYICGEETALIE 233 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG SW++GFGR N GTK Sbjct: 234 SLEGKQGKPRLKPPFPAMSGLYGCPTTVTNVETVAVAPTILRRGGSWFAGFGRPKNSGTK 293 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNLL VIPGGSSVP +P Sbjct: 294 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGVIPGGSSVPVIPKDICDD 353 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+ + SGLGTAAVIVMD+STDII AI RLS FYKHESCGQC+PCREGTGW+ Sbjct: 354 VLMDFDDLRRVRSGLGTAAVIVMDKSTDIIAAIARLSKFYKHESCGQCSPCREGTGWLWD 413 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + ERLV G A+ E+D+L E+S+ IEG TICALGDAAAWP+QGLI+++RP IE+RI + Sbjct: 414 ITERLVTGDAKLDEVDMLEEISRQIEGHTICALGDAAAWPVQGLIRHYRPEIEQRIQDFQ 473 >gi|326490041|dbj|BAJ94094.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326490708|dbj|BAJ90021.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 505 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 289/418 (69%), Positives = 336/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W+ ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAMKRGDWNRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YASGLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYASGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAV+VMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVMVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRD 493 >gi|301771850|ref|XP_002921334.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Ailuropoda melanoleuca] Length = 461 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 274/419 (65%), Positives = 325/419 (77%), Gaps = 5/419 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 36 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 95 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 96 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 155 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 156 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 215 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 216 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 275 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG WDNLLAVIPGGSS P +P Sbjct: 276 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 331 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 332 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 391 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 392 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 450 >gi|294011313|ref|YP_003544773.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S] gi|292674643|dbj|BAI96161.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S] Length = 438 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 299/421 (71%), Positives = 348/421 (82%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q ++ +M RG WDN K+LE G+D II +KASGLRGRGGAGF Sbjct: 8 LADKDRIFTNVYGFQDWAIDAAMKRGDWDNTKKLLEIGQDEIIERIKASGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 68 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRARA 127 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFI E + L AAV++ Y G LG N+ GYD D+ VH GAGAYICGEETA + Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRG++W+S FGRENN+GT Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGSAWFSSFGRENNKGT 247 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIM 307 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 308 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMERL G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++ Sbjct: 368 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINEN 427 Query: 420 H 420 Sbjct: 428 K 428 >gi|319408584|emb|CBI82239.1| NADH dehydrogenase I chain F [Bartonella schoenbuchensis R1] Length = 435 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 320/421 (76%), Positives = 369/421 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLTD+DRIFTN+YGL+ KSL +M RGHWD I+EKGRDWI++EVK SGLRGRGGAGF Sbjct: 1 MLTDKDRIFTNIYGLKDKSLKGAMLRGHWDGTKAIVEKGRDWIVDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FAIGA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAIGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQAA+DECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQAAIDECYDAGLLGKKTKCGHVCDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPT VNNVESIAV+PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTIVNNVESIAVIPTILRRGASWFSSIGRSNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+DG++++GS GT VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AVMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR IE+RID Y Sbjct: 361 LLERMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIEQRIDDYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|332024708|gb|EGI64897.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Acromyrmex echinatior] Length = 470 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 264/423 (62%), Positives = 325/423 (76%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +MSRG W +I++KG DWIINE+K SGLRGRGGAGF Sbjct: 45 LADEDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIDKGADWIINEIKISGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD DI V GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V+G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+++ Sbjct: 405 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMNEQK 464 Query: 421 RCN 423 R Sbjct: 465 RAT 467 >gi|254437215|ref|ZP_05050709.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 307] gi|198252661|gb|EDY76975.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter antarcticus 307] Length = 428 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 312/421 (74%), Positives = 358/421 (85%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + +RGHWD I++KGR+WII+ +KASGLRGRGGAGF Sbjct: 2 MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGREWIIDNMKASGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ Sbjct: 62 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRE+E+LQAA+DECY +G++G N+ K G+D DI + HGAGAYICGEETALL Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYEAGMVGKNASKSGWDFDIYLVHGAGAYICGEETALL 181 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG+ W++GFGR NN GT Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSDWFAGFGRPNNAGT 241 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEESMSI F+ELIEKHC GIRGGW NL AVIPGG+SVP + MR Sbjct: 242 KLFAISGHVNNPCVVEESMSIPFEELIEKHCDGIRGGWGNLKAVIPGGASVPMVRGENMR 301 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D LKE GS LGTAAVIVMD+ TD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM Sbjct: 302 DAIMDFDALKEKGSSLGTAAVIVMDKDTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 361 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMERLVKG A EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR IE+RI Sbjct: 362 RVMERLVKGDADVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRIAHK 421 Query: 420 H 420 Sbjct: 422 R 422 >gi|331226611|ref|XP_003325975.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309304965|gb|EFP81556.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 511 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 269/426 (63%), Positives = 328/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N Y L + +RG W I+ KG ++II E+K SGLRGRGGAGF Sbjct: 49 LKDQDRIFQNAYMKHDHLLQGAQARGDWHKTKDIILKGHEFIIKEIKESGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQAA+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 169 SAAYIYIRGEFIMEAHHLQAAIDEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PC VEE MSI +LI+KHCGG+ GGWDNLL ++PGGSSVP L + Sbjct: 289 GTKLFCISGHVNNPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 A+MD+D LK++ SGLGT AVIVM++STDI+ AI R + FYKHESCGQCTPCREGT W Sbjct: 349 CEEALMDFDSLKDLYSGLGTGAVIVMNKSTDIVAAIARFAKFYKHESCGQCTPCREGTTW 408 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++M+R V G A +REID+L+E+++ IE TICALGDAAAWPIQGL++ F+P IE RI Sbjct: 409 MEKMMDRFVVGRAHEREIDMLWELTRQIENHTICALGDAAAWPIQGLLRKFKPEIEARIQ 468 Query: 418 QYHRCN 423 + N Sbjct: 469 DFRAKN 474 >gi|89071182|ref|ZP_01158373.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus HTCC2516] gi|89043278|gb|EAR49504.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus HTCC2516] Length = 428 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 317/422 (75%), Positives = 364/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++ KGR+WII E+K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRTLAGAKKRGHWDGTAGLIGKGREWIIEEMKGSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N + G+D D+ +HHGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAVSGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGDAAVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKH 420 Query: 419 YH 420 Sbjct: 421 KR 422 >gi|1408306|gb|AAB03672.1| ndufv1 [Dictyostelium discoideum] Length = 479 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 274/421 (65%), Positives = 330/421 (78%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +++RG W I++KG+DWI+ E+ ASGLRGRGGAGF Sbjct: 51 LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110 Query: 62 TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMP+ S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A Sbjct: 111 SGLKWSFMPETTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E + L+ A+DE Y +GL+G N+ GY D+ VH GAGAYICGEETAL+ Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++ FGR N GT Sbjct: 231 GSIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNL VIPGGSSVP LP Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L++ SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +RLV G A+ EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470 Query: 420 H 420 Sbjct: 471 Q 471 >gi|62510804|sp|Q8HXQ9|NDUV1_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|23574759|dbj|BAC20599.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Macaca fascicularis] Length = 464 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 273/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYK+ESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|198415470|ref|XP_002131638.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Ciona intestinalis] Length = 457 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 274/421 (65%), Positives = 327/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L +M RG W +I+ KG DW++ ++K SGLRGRGGAGF Sbjct: 30 LKDQDRIFTNLYGRHDWKLKGAMQRGDWYKTKEIILKGNDWVLQQIKESGLRGRGGAGFP 89 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM + RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A A+GA A Sbjct: 90 TGMKWSFMNRPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGVAMGARAA 149 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +L A+ E Y +GL+G +S GYD DI VH GAGAYICGEET+L+E Sbjct: 150 YIYIRGEFYNEASNLNVAIKEAYDAGLIGKDSCGSGYDFDIFVHRGAGAYICGEETSLIE 209 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VG++GCPTTV NVE++AV PTI RR W++GFGRE N GTK Sbjct: 210 SLEGKQGKPRLKPPFPAEVGVFGCPTTVANVETVAVAPTICRRTPQWFAGFGRERNTGTK 269 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE+MSI ELIE+HCGG+RGGWDNLL VIPGGSS P LP Sbjct: 270 LFNISGHVNHPCTVEETMSIPMKELIERHCGGVRGGWDNLLCVIPGGSSTPLLPKNICDD 329 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L E+ SGLGTAA+IVMD+STD+I+AI RL FYKHESCGQCTPCREG WM Sbjct: 330 VLMDFDALVEVTSGLGTAALIVMDKSTDVIRAIARLMEFYKHESCGQCTPCREGVTWMND 389 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++R +G A EID L+E+SK +EG TICALGD AAWP QGLI++ RP+IEER+ YH Sbjct: 390 TLQRFTRGDADPEEIDSLWEISKQVEGHTICALGDGAAWPAQGLIRHMRPVIEERMKAYH 449 Query: 421 R 421 + Sbjct: 450 Q 450 >gi|19526814|ref|NP_598427.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Mus musculus] gi|47117274|sp|Q91YT0|NDUV1_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; AltName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit; Flags: Precursor gi|15928709|gb|AAH14818.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus] gi|26344485|dbj|BAC35893.1| unnamed protein product [Mus musculus] gi|27469887|gb|AAH41682.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus] gi|148701043|gb|EDL32990.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b [Mus musculus] Length = 464 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 273/421 (64%), Positives = 329/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ YD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++ Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRFA 454 Query: 421 R 421 + Sbjct: 455 Q 455 >gi|182679348|ref|YP_001833494.1| NADH dehydrogenase I subunit F [Beijerinckia indica subsp. indica ATCC 9039] gi|182635231|gb|ACB96005.1| NADH-quinone oxidoreductase, F subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 436 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 303/423 (71%), Positives = 355/423 (83%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L +M+RG WDN +++KG+DWI+NE+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGYGDWGLKGAMARGAWDNTKGLIDKGKDWILNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMR++PH LIEGC+IASFA+ AH Sbjct: 61 PTGLKWSFMPKADPARPSYLVVNADESEPGTCKDREIMRNDPHLLIEGCLIASFAMEAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE L+AAV + Y + L+G N+ G+ DI VHHGAGAYICGEETALLE Sbjct: 121 CYIYIRGEYIFERERLEAAVAQAYEAKLVGKNNIHGWPFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKG PR+KPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK Sbjct: 181 SLEGKKGMPRMKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNAGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN C VEE+MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVPC+PA ++ Sbjct: 241 LFCISGHVNKRCNVEEAMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCVPAHEIID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A MD+D L+ + SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGW+ R Sbjct: 301 APMDFDTLRGLKSGLGTAAVIVMDKSTDIVRAIARLSHFYKHESCGQCTPCREGTGWLWR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R+ +G AQKREID+L +V+ IEG TICALGDAAAWP+QGLI++FR IE++IDQY Sbjct: 361 VMTRMAEGRAQKREIDMLLDVTTRIEGHTICALGDAAAWPVQGLIRHFRSEIEKKIDQYA 420 Query: 421 RCN 423 Sbjct: 421 ANP 423 >gi|156396709|ref|XP_001637535.1| predicted protein [Nematostella vectensis] gi|156224648|gb|EDO45472.1| predicted protein [Nematostella vectensis] Length = 477 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 258/419 (61%), Positives = 323/419 (77%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +I+ KG +WI+ E+ SGLRGRGGAGF Sbjct: 46 LKDEDRIFTNLYGRHDWKLKGAISRGDWYKTKEIILKGPEWILKEITTSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A ++GA A Sbjct: 106 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGASMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A++E Y GL+G N+ G+D D+ +H GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEASNMQVAINEAYKKGLIGKNACGSGFDFDVYMHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W+SGFGR N GTK Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGEWFSGFGRPRNTGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ +LIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 286 LFNISGHVNNPCTVEEEMSVPLKDLIERHAGGVIGGWDNLLGVIPGGSSTPLIPLSVCDD 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IV ++ D+IK I RL FYKHESCGQCTPCREG WM++ Sbjct: 346 VLMDFDALVQAQTGLGTAALIVFNKQADVIKGIARLIEFYKHESCGQCTPCREGCNWMLK 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R +G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI+++RP IE+R+ ++ Sbjct: 406 IMNRFTEGNAKTSEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHYRPEIEQRMKEF 464 >gi|260574764|ref|ZP_05842767.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2] gi|259023181|gb|EEW26474.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2] Length = 431 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 305/421 (72%), Positives = 352/421 (83%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL+ + RG+WD L GRDWI+++VKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHDRSLAGARKRGNWDGTAGFLAHGRDWIVDQVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPKV RP YLV+NADESEPGTCKDR+IMRH+PHTL+EG +IA FA+GA Sbjct: 61 PTGLKWSFMPKVSDGRPAYLVINADESEPGTCKDREIMRHDPHTLVEGALIAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ GY+ D+ + HGAGAYICGEETA+L Sbjct: 121 GYIYIRGEYIREREALQAAIDEAYDAGLIGKNACGSGYNYDLYLVHGAGAYICGEETAML 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAASGLYGCPTTVNNVESIAVVPTILRRGASWFAGFGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+MSI EL++KHCGG+RGGW NL AVIPGGSSVP L A Q Sbjct: 241 KLFGISGHVVNPCVVEEAMSIPLRELLDKHCGGVRGGWKNLKAVIPGGSSVPMLNAAQCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMD+D L+E SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM Sbjct: 301 EAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLVKG A+ EID+L V+K +EG TICALGDAAAWPIQGL+++FR IE+RI Sbjct: 361 RVMDRLVKGEAEIEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLVRHFREEIEDRIKAR 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|134110700|ref|XP_776177.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258845|gb|EAL21530.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var. neoformans B-3501A] Length = 534 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 269/428 (62%), Positives = 331/428 (77%), Gaps = 4/428 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNL+ + +++RG W I+ KG W+I VK SGLRGRGGAGF Sbjct: 75 LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F +SGHVN PC VEE MSI EL+EKHCGG+RGGW NL ++PGGSSVP + Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494 Query: 418 QYHRCNFQ 425 Q+H N Q Sbjct: 495 QFHAKNGQ 502 >gi|168003423|ref|XP_001754412.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694514|gb|EDQ80862.1| predicted protein [Physcomitrella patens subsp. patens] Length = 462 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 286/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L+ + RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 31 LKDEDRIFTNLYGLHDPFLAGAKKRGDWYRTKDLVHKGTDWIVNEVKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 91 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +LQ A+ ECY GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGLLGKNACSTGYDFDVYIHYGAGAYICGEETALLE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 211 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 271 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+ Sbjct: 331 VLMDFDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLWT 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 391 MMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILE 448 >gi|71004398|ref|XP_756865.1| hypothetical protein UM00718.1 [Ustilago maydis 521] gi|46095874|gb|EAK81107.1| hypothetical protein UM00718.1 [Ustilago maydis 521] Length = 846 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N Y L + +RG W IL KG DWII+++K SG+RGRGGAGF Sbjct: 387 LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 446 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 447 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 506 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IYVRGEF E LQ A+ E YA GL+G N+ GYD D+ VH GAGAYICGEETA Sbjct: 507 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 566 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A PTI+RRG SW++GFGR+ N+ Sbjct: 567 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPSWFAGFGRDKNQ 626 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF+ISGHVN PC VEE MSI ELIE+HCGG+RGGWDNLL ++PGGSSVP LP + Sbjct: 627 GTKLFAISGHVNNPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 686 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D L+E S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W Sbjct: 687 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 746 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +MER +G REID++YE++K +EG TICAL DAAAWPIQGL++ FRP IEER+ Sbjct: 747 LANMMERFEEGRGNNREIDMIYELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 806 Query: 418 QYHRCN 423 Y N Sbjct: 807 LYQEKN 812 >gi|254475856|ref|ZP_05089242.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11] gi|214030099|gb|EEB70934.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11] Length = 432 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 317/422 (75%), Positives = 363/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDNGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|148222918|ref|NP_001080215.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus laevis] gi|27370996|gb|AAH41320.1| Ndufv1 protein [Xenopus laevis] gi|77748340|gb|AAI06321.1| Ndufv1 protein [Xenopus laevis] Length = 471 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 272/425 (64%), Positives = 330/425 (77%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L ++SRG W +IL KG DWI EVK SGLRGRGGAGF Sbjct: 41 LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWIQGEVKTSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A ++GA A Sbjct: 101 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 160 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ AV E Y++GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 161 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 220 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 221 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNSGTK 280 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 281 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPRSVCET 340 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IVM++STDI++AI RL FYKHESCGQCTPCREG WM + Sbjct: 341 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 400 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R+ +G A EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ + Sbjct: 401 VMWRMCRGDAHVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEQRMKLFD 460 Query: 421 RCNFQ 425 Q Sbjct: 461 TAKRQ 465 >gi|58265992|ref|XP_570152.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus neoformans var. neoformans JEC21] gi|57226385|gb|AAW42845.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 534 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 269/428 (62%), Positives = 331/428 (77%), Gaps = 4/428 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNL+ + +++RG W I+ KG W+I VK SGLRGRGGAGF Sbjct: 75 LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F +SGHVN PC VEE MSI EL+EKHCGG+RGGW NL ++PGGSSVP + Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494 Query: 418 QYHRCNFQ 425 Q+H N Q Sbjct: 495 QFHAKNGQ 502 >gi|58332830|ref|NP_001011491.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus (Silurana) tropicalis] gi|57033091|gb|AAH88876.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Xenopus (Silurana) tropicalis] gi|89269885|emb|CAJ83800.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Xenopus (Silurana) tropicalis] Length = 468 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 271/417 (64%), Positives = 331/417 (79%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+KASGLRGRGGAGF Sbjct: 40 LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A ++GA A Sbjct: 100 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 159 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ AV E Y++GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 160 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 219 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 220 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNAGTK 279 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 280 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPQSVCET 339 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IVM++STDI++AI RL FYKHESCGQCTPCREG WM + Sbjct: 340 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 399 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 VM R+ +G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ Sbjct: 400 VMWRMCQGDARVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEKRMK 456 >gi|296536151|ref|ZP_06898279.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC 49957] gi|296263522|gb|EFH10019.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC 49957] Length = 435 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 286/422 (67%), Positives = 331/422 (78%), Gaps = 2/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYGL +L ++ RG WD I+ KGRDWII E+K SGLRGRGGAGF Sbjct: 3 LSDKDRIFTNLYGLHPWNLKEARRRGSWDGTAAIIAKGRDWIIEEMKQSGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D YLVVN DESEPGTCKDRDI+R++PH LIEGC+ A +GAH Sbjct: 63 TGMKWSFMPKSNPDGRPSYLVVNGDESEPGTCKDRDIIRNDPHLLIEGCLYAGVGMGAHA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGE+ E + LQAA+DE Y +GLLG N+ G+D D+ VH GAGAYICGEETAL+ Sbjct: 123 GYIYVRGEYYNEIQILQAAIDEAYEAGLLGPNAAGSGWDFDLYVHRGAGAYICGEETALI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA VGLYGCPTTVNNVE+IAVVP IL+RGASW+S FGR N GT Sbjct: 183 ESLEGKKGMPRLKPPFPAAVGLYGCPTTVNNVETIAVVPAILKRGASWFSSFGRPKNVGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F I GHVN PC VE MSI ELIE++ GG+RGGWDNLLAVIPGGSS P LP Sbjct: 243 KIFCIQGHVNKPCNVEAEMSIPMRELIERYAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E SGLGTA VIVMD+STDIIKAI RL+ FYKHESCGQCTPCREG GW Sbjct: 303 DVLMDFDALREHKSGLGTAGVIVMDKSTDIIKAIARLAQFYKHESCGQCTPCREGMGWQK 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M+R+V+G A+ EIDLL V++ IEG TICAL D WP+QGLI++FRPL+EERI QY Sbjct: 363 RLMDRMVEGRAEIEEIDLLEGVTRQIEGHTICALADGGVWPVQGLIRHFRPLMEERIRQY 422 Query: 420 HR 421 + Sbjct: 423 KQ 424 >gi|226486986|emb|CAX75358.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 476 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 42 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R ++ Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460 >gi|226486984|emb|CAX75357.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 476 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 42 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R ++ Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460 >gi|99080589|ref|YP_612743.1| NADH dehydrogenase I subunit F [Ruegeria sp. TM1040] gi|99036869|gb|ABF63481.1| NADH-quinone oxidoreductase F subunit [Ruegeria sp. TM1040] Length = 432 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 316/422 (74%), Positives = 365/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDI+KAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|255078918|ref|XP_002503039.1| predicted protein [Micromonas sp. RCC299] gi|226518305|gb|ACO64297.1| predicted protein [Micromonas sp. RCC299] Length = 441 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 284/417 (68%), Positives = 338/417 (81%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RG W N +++ G DWI+NE+KASGLRGRGGAGF Sbjct: 15 LSDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKELMLMGPDWIVNEMKASGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A Sbjct: 75 SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A DE YA+G LG N+ G D DI +H+GAGAYICGEETAL+E Sbjct: 135 YIYIRGEYVNERLALMKARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK Sbjct: 195 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 254 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 255 LFCISGHVNKPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKSVCEE 314 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 315 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYA 374 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +MER+ KG A+ EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+ Sbjct: 375 IMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 431 >gi|56753822|gb|AAW25108.1| SJCHGC01665 protein [Schistosoma japonicum] gi|226486990|emb|CAX75360.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 475 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 41 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R ++ Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 459 >gi|90083182|dbj|BAE90673.1| unnamed protein product [Macaca fascicularis] Length = 464 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPAQGLIRHFRPELEERMQRF 453 >gi|75676073|ref|YP_318494.1| NADH dehydrogenase I subunit F [Nitrobacter winogradskyi Nb-255] gi|74420943|gb|ABA05142.1| NADH dehydrogenase subunit F [Nitrobacter winogradskyi Nb-255] Length = 441 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 300/420 (71%), Positives = 344/420 (81%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I+ KGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVGKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A +GAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE LQAA+DE Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHV PC VEE+M ITF ELI+ HCGGIRGGW NL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCVSGHVERPCNVEEAMGITFRELIDTHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR IEERIDQY Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420 >gi|55741424|ref|NP_001006973.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Rattus norvegicus] gi|54035438|gb|AAH83709.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Rattus norvegicus] gi|149061920|gb|EDM12343.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a [Rattus norvegicus] Length = 464 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 271/419 (64%), Positives = 326/419 (77%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ YD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSDYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVM+ STDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++ Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRF 453 >gi|319405693|emb|CBI79316.1| NADH dehydrogenase I chain F [Bartonella sp. AR 15-3] Length = 435 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 323/425 (76%), Positives = 369/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL ++ RGHWD I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR IE+RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDNYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAVQ 425 >gi|163868368|ref|YP_001609577.1| NADH dehydrogenase I subunit F [Bartonella tribocorum CIP 105476] gi|161018024|emb|CAK01582.1| NADH dehydrogenase I chain F [Bartonella tribocorum CIP 105476] Length = 435 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 320/421 (76%), Positives = 371/421 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLTD+DRIFTN+YGL+ KSL +M RGHW+ + +I++KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLTDKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEIIDKGRDWIIDEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQ AVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQTAVDECYEAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT VIVMD++TDIIKAIWR+S F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKTTDIIKAIWRISAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|329850724|ref|ZP_08265569.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum C19] gi|328841039|gb|EGF90610.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum C19] Length = 437 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 301/420 (71%), Positives = 339/420 (80%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RG W+ IL G WII+ VK SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGAPWIIDNVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE L+AAV + Y + L+G N+ G+D D+ VHHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYILERERLEAAVKQAYEAKLIGKNNVHGWDFDVYVHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA+W++ FG NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGSGLYGCPTTVNNVESIAVVGTILRRGAAWFASFGAPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRKLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L+ + SGLGTAAVIVMD+STD+I+AI RLS FYKHESCGQCTPCREGTGWM R Sbjct: 304 LAMDFDTLRNLKSGLGTAAVIVMDKSTDLIRAIARLSYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+VKG A+ EID L EV+ +EG TICALGDAAAWPIQGLI++FRP IE RI Y Sbjct: 364 VMERMVKGDAEPSEIDTLLEVTTQVEGHTICALGDAAAWPIQGLIRHFRPEIEARIAAYR 423 >gi|3184148|emb|CAA76757.1| NADH:ubiquinone oxidoreductase 51-kD subunit [Homo sapiens] Length = 464 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 273/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH G + GGWD LLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGFVTGGWDYLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453 >gi|326429055|gb|EGD74625.1| NADH dehydrogenase flavoprotein 1 [Salpingoeca sp. ATCC 50818] Length = 463 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 279/421 (66%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L +M RG W I+ KG D+I+ EVK SGLRGRGGAGF Sbjct: 31 LQDSDRIFQNLYGKHDWGLKGAMKRGTWYKTKDIVLKGDDFILEEVKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM DRP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A A+ A A Sbjct: 91 SGLKWSFMKGATDDRPKYLVVNADEGEPGTCKDREIMRHDPHMLIEGCLVAGRAMNARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF +E +LQ A++E Y +GL+G N+ GYD D+ + GAGAYICGEETAL+E Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDAGLIGKNACGSGYDFDVYLFRGAGAYICGEETALIE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPANVGL+GCPTTV NVE++AV PTILRRG W++GFGR+ N GTK Sbjct: 211 SLEGKTGKPRLKPPFPANVGLFGCPTTVANVETVAVAPTILRRGGDWFAGFGRKRNEGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PC VEESMSIT ELI+KHCGG+ GGWDNLL VIPGGSSVP LP Sbjct: 271 LFAISGNVNNPCVVEESMSITLRELIDKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVMD+S DII I RLS FY HESCGQCTPCREGT W+ + Sbjct: 331 VLMDFDALAAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLAK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+ Sbjct: 391 VMHRFVRGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450 Query: 421 R 421 + Sbjct: 451 K 451 >gi|219112977|ref|XP_002186072.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582922|gb|ACI65542.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 493 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 269/421 (63%), Positives = 329/421 (78%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L+DQDRIFTNLYG Q L D++ RG + +I+ G DWII E+K SGLRGRGGAGF Sbjct: 38 FLSDQDRIFTNLYGEQDWRLPDAIKRGDYHLTKEIMCMGPDWIIQEIKDSGLRGRGGAGF 97 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH LIEGC++A +A+ A Sbjct: 98 PSGLKWSFMPKETDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCILAGYAMRARA 157 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+ E L A+ E YA+GLLG N+ GYD DI +H GAGAYICGEETAL+ Sbjct: 158 AYIYIRGEYFNEAVVLDEAIHEAYAAGLLGKNACGSGYDYDIYLHRGAGAYICGEETALI 217 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++ FG ENNRGT Sbjct: 218 ESLEGKQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVAPTILRRGASWFASFGNENNRGT 277 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHV P VEESMSI +LI+KHCGG+R GW+++ A IPGGSSVP L Q Sbjct: 278 KLFAISGHVKNPMVVEESMSIPLRDLIDKHCGGMRNGWESVQACIPGGSSVPVLNKDQCG 337 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+M++D L+ GSGLGTAAV + D + D++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 338 EALMEFDDLRAKGSGLGTAAVTMFDNTVDMVGAIRRLSHFYKHESCGQCTPCREGTGWLE 397 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+ IE+RID Sbjct: 398 DILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRIDNP 457 Query: 420 H 420 Sbjct: 458 K 458 >gi|92117738|ref|YP_577467.1| NADH dehydrogenase I subunit F [Nitrobacter hamburgensis X14] gi|91800632|gb|ABE63007.1| NADH dehydrogenase subunit F [Nitrobacter hamburgensis X14] Length = 441 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 301/420 (71%), Positives = 344/420 (81%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTRTIVDKGRDWIISEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A +GAH Sbjct: 61 PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEFIRERE LQAA+DE Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AGYIYIRGEFIREREHLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV +PA Q+ Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 DTPMDFDSLGKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR IE RIDQY Sbjct: 361 RVLTRMADGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420 >gi|307174607|gb|EFN65028.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Camponotus floridanus] Length = 468 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 265/421 (62%), Positives = 324/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DR+FTNLYG L +MSRG W +IL+KG DWIINE+K SGLRGRGGAGF Sbjct: 44 LSDEDRVFTNLYGRHDWRLKGAMSRGDWYKTKEILDKGSDWIINEIKISGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA A+GA A Sbjct: 104 SGMKWSFMNKPADGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q AV E Y +GL+G NS GYD DI + GAGAYICGEETAL+E Sbjct: 164 YIYIRGEFYNEASNMQVAVAEAYQAGLIGKNSCGSGYDFDIFIVRGAGAYICGEETALIE 223 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 283 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELI++H GG+ GGWDNLL VIPGGSS P +P Sbjct: 284 LFNISGHVNNPCTVEEEMSIPLRELIDRHAGGVIGGWDNLLGVIPGGSSTPVIPKSACDT 343 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 ++D+D L + S GTAAVIVM++ TDIIKAI RL FYKHESCGQCTPCREG WM + Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMFK 403 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R V G A+ EID+L+E++K IE TICAL D AAWP+QGLI++FRP IE R+ + Sbjct: 404 ILKRFVDGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARLKEQK 463 Query: 421 R 421 R Sbjct: 464 R 464 >gi|114764726|ref|ZP_01443911.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Pelagibaca bermudensis HTCC2601] gi|114542926|gb|EAU45947.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Roseovarius sp. HTCC2601] Length = 431 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 291/421 (69%), Positives = 350/421 (83%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + RGHWD IL KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRTLQGAKKRGHWDGTAGILGKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGE+IRERE+LQAA+DE Y +G++G N+ G+D D+ +HHGAGAYICGEET+LL Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYDAGMIGKNACGSGWDFDLYLHHGAGAYICGEETSLL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL ++GHVN P EE MS++ E+IEKH GGIRGGWDNL A+IPGG+S P LP ++ Sbjct: 241 KLMGLTGHVNTPSVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPILPKDKLE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AI D+D ++E S GT +IVMD++TD++KA+WRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAIFDFDWMRENKSSFGTGCMIVMDQNTDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV+G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFREEIEDRIKAK 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|168052872|ref|XP_001778863.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669732|gb|EDQ56313.1| predicted protein [Physcomitrella patens subsp. patens] Length = 463 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 284/419 (67%), Positives = 336/419 (80%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG+ L+ + RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 31 LKDEDRIFTNLYGIHDPFLAGAKKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 91 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASG-LLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++ ER +LQ A+ ECY G LLG N+ GYD D+ +H+GAGAYICGEETALL Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGSLLGKNACGSGYDFDVYIHYGAGAYICGEETALL 210 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GT Sbjct: 211 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGT 270 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 271 KLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKNICD 330 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+ Sbjct: 331 DVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLW 390 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI + Sbjct: 391 TMMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILE 449 >gi|85708748|ref|ZP_01039814.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1] gi|85690282|gb|EAQ30285.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1] Length = 430 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 299/422 (70%), Positives = 356/422 (84%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG Q L + +RG WDN ++E+G+D II E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNVYGFQDAGLKAAQARGDWDNTKALIERGQDAIIEEIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+ A Sbjct: 61 PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE + LQ A+DE Y +GL+G N+ G+D D+ +H GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAQVLQKAIDEAYDAGLIGKNASGSGFDFDVFMHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRR A+W+S FGRENN+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRSANWFSSFGRENNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHV PC VEE+MSI F+ELIEKHCGGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGIRGGWDNLLAVIPGGSSVPLVPAEQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 RNAPMDFDGLKDLGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A EID+L+EV+K +EG TICALGDAAAWPIQGLI++FRP +E RI++ Sbjct: 361 WRVMERLRTGDAAIEEIDMLHEVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420 Query: 419 YH 420 ++ Sbjct: 421 HN 422 >gi|259418795|ref|ZP_05742712.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp. TrichCH4B] gi|259345017|gb|EEW56871.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp. TrichCH4B] Length = 432 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 317/422 (75%), Positives = 365/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD ++EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +MR Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|195146494|ref|XP_002014219.1| GL19080 [Drosophila persimilis] gi|194106172|gb|EDW28215.1| GL19080 [Drosophila persimilis] Length = 477 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG +WIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 469 Query: 421 R 421 + Sbjct: 470 Q 470 >gi|125986851|ref|XP_001357188.1| GA21571 [Drosophila pseudoobscura pseudoobscura] gi|54645518|gb|EAL34256.1| GA21571 [Drosophila pseudoobscura pseudoobscura] Length = 477 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG +WIINE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR N GTK Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKKVCDD 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM + Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 469 Query: 421 R 421 + Sbjct: 470 Q 470 >gi|328771741|gb|EGF81780.1| hypothetical protein BATDEDRAFT_31463 [Batrachochytrium dendrobatidis JAM81] Length = 462 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 275/422 (65%), Positives = 332/422 (78%), Gaps = 3/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L + RG W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 39 LSDNDRIFTNLYGRHDFKLEGAKKRGDWYKTKEIILKGHDWIISEMKTSGLRGRGGAGFP 98 Query: 62 TGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 +G+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++A A+ A Sbjct: 99 SGLKWSFMNKPGGPDGRPRYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLLAGRAMNAT 158 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+RGEF E +LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEETAL Sbjct: 159 ACYIYIRGEFYNEASNLQIAINEAYKAGLIGKNACGSGYDFDIYIHRGGGAYICGEETAL 218 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ES+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTILRRG SW++GFGRE N G Sbjct: 219 IESIEGKAGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTILRRGGSWFAGFGRERNSG 278 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLL +IPGGSSVP LP Sbjct: 279 TKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLGIIPGGSSVPVLPRKMC 338 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A+MD+D L++M SGLGTAAVIVMD+STDI+ AI RLS FY+HESCGQCTPCREGT W+ Sbjct: 339 EDALMDFDSLRDMQSGLGTAAVIVMDKSTDIVHAISRLSAFYQHESCGQCTPCREGTTWL 398 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R KG A+ EID++ E+S+ IEG TICALGDAAAWP+QGLI++FRP +E++I Q Sbjct: 399 SNMMRRFEKGNAKVAEIDMIEELSRQIEGHTICALGDAAAWPVQGLIRHFRPEVEKKIMQ 458 Query: 419 YH 420 + Sbjct: 459 FQ 460 >gi|260827659|ref|XP_002608782.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae] gi|229294134|gb|EEN64792.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae] Length = 475 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 265/421 (62%), Positives = 322/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M+RG + +I+ KG DWI+ E+ SGLRGRGGAGF Sbjct: 47 LSDEDRIFTNLYGRHDWKLKGAMARGDYYKTKEIILKGHDWILKEIVKSGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 107 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGVAMGARAA 166 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +L A+ E Y +GL+G N+ GYD DI VH GAGAYICGEET+L+E Sbjct: 167 YIYIRGEFYNEGTNLMVAIQEAYKAGLIGKNACGSGYDFDIYVHRGAGAYICGEETSLIE 226 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG W+ G GR N GTK Sbjct: 227 SLEGKAGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGMGRTRNSGTK 286 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG VN PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 287 LFNISGQVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPRSVCDD 346 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + + LGTAAVIV ++ D++K I RL FYKHESCGQCTPCREGTGWM + Sbjct: 347 VMMDFDALVQSQTALGTAAVIVFNKQADVVKGIARLIEFYKHESCGQCTPCREGTGWMTK 406 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G A+ EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R++ YH Sbjct: 407 IMYRFVEGNARPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMEAYH 466 Query: 421 R 421 + Sbjct: 467 K 467 >gi|196010577|ref|XP_002115153.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190582536|gb|EDV22609.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 442 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 267/434 (61%), Positives = 331/434 (76%), Gaps = 12/434 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D+DRIFTNLYG L ++SRG W +IL KG +WI+NEVK SGLRGRGGAGF Sbjct: 1 IKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGHEWILNEVKKSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A ++GA A Sbjct: 61 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 120 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A++E Y +GL+G N+ GYD DI +H GAGAYICGEETAL+E Sbjct: 121 YIYIRGEFYNEASNMQIAINEAYKAGLIGKNACSSGYDFDIFMHRGAGAYICGEETALIE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG W++ FGRE N GTK Sbjct: 181 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPAICRRGGDWFASFGRERNSGTK 240 Query: 241 -----------LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 LF ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLL +IPGGSS Sbjct: 241 ASLIIIFGYFDLFCISGHVNAPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLGIIPGGSS 300 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 VP +P +MD+D L+++ SGLGTAAVIVM++ +D+IK I RL FYKHESCGQCT Sbjct: 301 VPVIPRRICDDVLMDFDALQQVQSGLGTAAVIVMNKQSDMIKCISRLMDFYKHESCGQCT 360 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 PCREGTGW+ ++M R V+G A EID++ E+S+ IEG TICALGDAAAWP+QGL+++FR Sbjct: 361 PCREGTGWLAKIMARFVEGNADPEEIDMIEELSRQIEGHTICALGDAAAWPVQGLVRHFR 420 Query: 410 PLIEERIDQYHRCN 423 + ERI+QY N Sbjct: 421 HEMLERIEQYKAKN 434 >gi|40538780|ref|NP_777233.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Bos taurus] gi|162864|gb|AAA30450.1| mitochondrial NADH dehydrogenase (ubiquinone) 51kDa subunit [Bos taurus] Length = 464 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 274/416 (65%), Positives = 324/416 (77%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 VM R V+G A+ EID L E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 395 VMARFVRGDARPAEIDSLCEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450 >gi|254512379|ref|ZP_05124446.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae bacterium KLH11] gi|221536090|gb|EEE39078.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae bacterium KLH11] Length = 433 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 315/422 (74%), Positives = 364/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YG+ ++L + +RGHWD ++ KGRDWII +K SGLRGRGGAGF Sbjct: 2 MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTAGLINKGRDWIIQTMKDSGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH Sbjct: 62 PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y +GLLG N + G+D D+ +HHGAGAYICGEETAL+ Sbjct: 122 CYIYLRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 181 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 241 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F++LIE HCGGIRGGWDNLLAVIPGGSSVPC+ MR Sbjct: 242 KLFAISGHVNNPCVVEEAMSISFEDLIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 301 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 302 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 361 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 362 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 421 Query: 419 YH 420 Sbjct: 422 QK 423 >gi|121601753|ref|YP_989075.1| NADH dehydrogenase I subunit F [Bartonella bacilliformis KC583] gi|120613930|gb|ABM44531.1| NADH dehydrogenase (quinone), F subunit [Bartonella bacilliformis KC583] Length = 435 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 321/421 (76%), Positives = 366/421 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + +SL ++SRGHWDN I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDRSLKGAISRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +G LG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYDAGFLGKKTKHGHACDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EES+ I+F ELIEKH GGIRGGW+NLLAVIPGG+S P + + Sbjct: 241 LFMISGHVNAPCTFEESLGISFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDIMD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR IE RID Y Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIERRIDDYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|254420908|ref|ZP_05034632.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3] gi|196187085|gb|EDX82061.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3] Length = 437 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 297/426 (69%), Positives = 348/426 (81%), Gaps = 2/426 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG Q +L + +RG W+ +L+ GRDWIIN VKASGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGFQDWTLDGAKTRGAWNATKDMLDLGRDWIINNVKASGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLVVNADESEPGTCKDR+IMRH+P LIEGC+IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPQLLIEGCLIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ERE ++AAV + Y + L+G ++ G+D D+ +HHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKDNVHGWDFDVYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAGWFAGFGRPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L +ISGHVN PC VEE+MSI +L+E+HCGG+RGGWDNL A+IPGGSSVP + Sbjct: 244 LMAISGHVNAPCVVEEAMSIPLRQLLEEHCGGVRGGWDNLKAIIPGGSSVPLITREMSET 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L+EM SGLGTAAVIVMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R Sbjct: 304 ALMDFDSLREMRSGLGTAAVIVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 V+ER+ G A EIDLL +V+ +EG TICALGDAAAWP+QGLI++FR IEERI Y Sbjct: 364 VLERMSVGEADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIANYR 423 Query: 420 -HRCNF 424 R NF Sbjct: 424 SRRANF 429 >gi|163741486|ref|ZP_02148877.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis 2.10] gi|161385220|gb|EDQ09598.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis 2.10] Length = 432 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 316/422 (74%), Positives = 364/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD I+EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAA+IVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAIIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|260428309|ref|ZP_05782288.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45] gi|260422801|gb|EEX16052.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45] Length = 431 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 291/418 (69%), Positives = 347/418 (83%), Gaps = 1/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG+ ++L + RGHWD I+ KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLKDEDRIFTNLYGMHDRTLEGAKKRGHWDGTADIIGKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE+E+LQAA+DE Y G++G N+ G+D D+ +HHGAGAYICGEETAL+ Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDKGMIGRNACGTGWDFDLYLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +++GHVN PC EE MS++ E+IEKH GGIRGGWDNL A+IPGG+S P LP + Sbjct: 241 KLMALTGHVNTPCVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPVLPKHALE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AI D+D ++E S GT +IVMD S D++KA+WRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAIFDFDWMRENRSSFGTGCMIVMDNSVDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM+RLV G A+ EID+L +V+K +EG TICALGDAAAWPIQGLI++FR IE+RI Sbjct: 361 RVMDRLVTGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIK 418 >gi|328871524|gb|EGG19894.1| ubiquinone oxidoreductase [Dictyostelium fasciculatum] Length = 473 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 276/420 (65%), Positives = 329/420 (78%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +++RG W ++ KG+DWII E+ ASGLRGRGGAGF Sbjct: 46 LKDKDRIFTNLYGEHDVYLKGAIARGDWYRTKDLIGKGKDWIIKEMMASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A A Sbjct: 106 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGFAMRACAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E + ++ A+ E Y +G LG N+ GY D VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFHLEAKVMEQAIAEAYKAGYLGENACGTGYKFDCYVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA GLYGCPTTV NVE++AV PTILRRG +W++GFGR N GTK Sbjct: 226 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNSGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELI+KHCGG+ GGWDNLL +IPGGSSVP LP Sbjct: 286 LFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGIIPGGSSVPVLPKDICNE 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+ + SGLGTAAV VMD+STDI+ AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 346 VLMDFDDLRRVRSGLGTAAVTVMDKSTDIVGAIARLSKFYKHESCGQCTPCREGTGWMWD 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMERLV G A+ EID+L E+++ +EG TICALGDAAAWPIQGL+++FRP +E RI + Sbjct: 406 VMERLVTGDAKLDEIDMLEEITRQVEGHTICALGDAAAWPIQGLLRHFRPEVEARIHSFQ 465 >gi|209964545|ref|YP_002297460.1| NADH dehydrogenase I subunit F [Rhodospirillum centenum SW] gi|209958011|gb|ACI98647.1| NADH-quinone oxidoreductase chain F [Rhodospirillum centenum SW] Length = 433 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 297/421 (70%), Positives = 334/421 (79%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG + L + RG WDN IL GRD II VK SGLRGRGGAGF Sbjct: 1 MLRDEDRIFTNLYGFEDFRLEAARRRGDWDNTQDILALGRDRIIELVKESGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK P YLVVNADE EPGTCKDRDI+RH+PH L+EGC+IA FAIGA Sbjct: 61 STGMKWSFMPKKSDGGPVYLVVNADEGEPGTCKDRDILRHDPHKLVEGCLIAGFAIGATA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E +Q A+DE YA+GL+G N+ GYD DI +H GAGAYICGEETAL+ Sbjct: 121 CYIYIRGEFYDEGSHVQQAIDEAYAAGLIGRNACGSGYDFDIYLHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPA GLY PTTVNNVE+IAVVPTILRRGA+W++G GR N GT Sbjct: 181 ESLEGKKGQPRNKPPFPAMAGLYARPTTVNNVETIAVVPTILRRGATWFAGLGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I EL+EKH GG+RGGWDNLLA+IPGGSSVP LP Sbjct: 241 KVFCISGHVNRPCNVEEEMGIPLRELVEKHAGGVRGGWDNLLAIIPGGSSVPMLPRETCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAVIVMDRSTD++KAI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 TVLMDFDSLREVRSGLGTAAVIVMDRSTDVVKAIARLSKFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+VKG A+ EID+L +VSK IEG TICALGDAAAWPIQGLI+NFRP +E RI +Y Sbjct: 361 RVMERMVKGQARIEEIDMLLDVSKEIEGHTICALGDAAAWPIQGLIRNFRPEMERRILEY 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|49475653|ref|YP_033694.1| NADH dehydrogenase I subunit F [Bartonella henselae str. Houston-1] gi|49238460|emb|CAF27688.1| NADH dehydrogenase I, F subunit [Bartonella henselae str. Houston-1] Length = 435 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 321/421 (76%), Positives = 370/421 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYGL+ KSL ++SRGHWD I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGLKDKSLKAAISRGHWDGTRAIIDKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCV+A+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVLATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQAAVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFRP IE RID Y Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|86749697|ref|YP_486193.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris HaA2] gi|86572725|gb|ABD07282.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris HaA2] Length = 441 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 300/422 (71%), Positives = 345/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG W+ I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IA A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ GY D+ V HGAGAYICGEETALL Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|49474182|ref|YP_032224.1| NADH dehydrogenase I subunit F [Bartonella quintana str. Toulouse] gi|49239686|emb|CAF26061.1| NADH dehydrogenase I, F subunit [Bartonella quintana str. Toulouse] Length = 435 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 323/425 (76%), Positives = 370/425 (87%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD + I++KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLKDKSLKAAMSRGHWDGIKAIIDKGRDWIIDEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC +A+FA+GA+ Sbjct: 61 PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCALATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAAVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAVDECYDAGLLGKKTKYGHVCDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV+PTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVIPTILRRGASWFSSIGRANNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPVVRGEDMVD 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRITAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVS+ +EG TICALGDAAAWPIQGLI+NFRP IE RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSEQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSVIQ 425 >gi|319898887|ref|YP_004158980.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73] gi|319402851|emb|CBI76402.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73] Length = 435 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 324/425 (76%), Positives = 368/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + KSL +M RGHWDN I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDKSLKGAMLRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQ A+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQVAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGWDNLLAVIPGG+S P + M Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWDNLLAVIPGGASCPIVRGEDMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDIGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR IE+RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAIQ 425 >gi|163738803|ref|ZP_02146217.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis BS107] gi|161388131|gb|EDQ12486.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis BS107] Length = 432 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 317/422 (75%), Positives = 366/422 (86%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ ++L+ + RGHWD I+EKGRDWII +K SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH Sbjct: 61 PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DECY GLLG N+ G+D D+++HHGAGAYICGEETAL+ Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVLLHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG W++GFGR+NN GT Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+ +M+ Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ E+GSGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 MRVM+RLVKG A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420 Query: 419 YH 420 Sbjct: 421 QK 422 >gi|73982787|ref|XP_533212.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 1 [Canis familiaris] Length = 464 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 269/421 (63%), Positives = 324/421 (76%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRL P ++ G++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLNPSSHSSTGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454 Query: 421 R 421 + Sbjct: 455 Q 455 >gi|154298519|ref|XP_001549682.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia fuckeliana B05.10] gi|150858040|gb|EDN33232.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia fuckeliana B05.10] Length = 509 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 270/426 (63%), Positives = 320/426 (75%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L+ + G W IL KG DWII+E+KASGLRGRGGAGF Sbjct: 60 LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM + P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ Sbjct: 120 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 179 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 180 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 239 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG W++ FGRE N Sbjct: 240 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 299 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 300 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKDV 359 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 360 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 419 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 420 TEQIMKRFEKGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 479 Query: 418 QYHRCN 423 Y N Sbjct: 480 DYAEKN 485 >gi|91977350|ref|YP_570009.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB5] gi|91683806|gb|ABE40108.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris BisB5] Length = 441 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 299/422 (70%), Positives = 346/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG W+ I++KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A A+GAH Sbjct: 61 PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLVAGCAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAA+D+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGFPFDLYVAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA + Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STDI+ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDIVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|91205998|ref|YP_538353.1| NADH dehydrogenase I subunit F [Rickettsia bellii RML369-C] gi|157826638|ref|YP_001495702.1| NADH dehydrogenase I subunit F [Rickettsia bellii OSU 85-389] gi|122425283|sp|Q1RHA0|NUOF_RICBR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|166918573|sp|A8GYE0|NUOF_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|91069542|gb|ABE05264.1| NADH dehydrogenase I chain F [Rickettsia bellii RML369-C] gi|157801942|gb|ABV78665.1| NADH dehydrogenase I chain F [Rickettsia bellii OSU 85-389] Length = 417 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 295/418 (70%), Positives = 331/418 (79%), Gaps = 2/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIFTNL+G Q L S G WDN +L KG++WII EVK SGLRGRGGAGF Sbjct: 1 MLKKEDRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG KWSFMPK S +P YLVVNADESEPGTCKDRDI+R+EPH LIEGC++ASFAIGA+ Sbjct: 61 STGTKWSFMPK-ESKKPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANS 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G++ DI +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I E+IEKH GG+RGGWDNL A+IPGGSSVP LP Sbjct: 240 KIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+D LK GS LGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM RLVKG A+K EID L EV+K IEG TICALGDAAAWPIQGLIK+FR IE RI Sbjct: 360 RVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417 >gi|224009243|ref|XP_002293580.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana CCMP1335] gi|220970980|gb|EED89316.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana CCMP1335] Length = 499 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 269/418 (64%), Positives = 327/418 (78%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLYG Q L D++ RG + +++ G DWI+ E+K SGLRGRGGAGF Sbjct: 44 LSDQDRIFTNLYGEQDWRLKDALKRGDYHLTKEMMWMGPDWIVQEIKDSGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH LIEGC+IA +A+ A A Sbjct: 104 SGLKWSFMPKESDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCLIAGYAMRARAA 163 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E L A+ E YA+GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 164 YIYIRGEYFNEAVVLDEAIHEAYAAGLIGKNACGSGYDFDVYLHRGAGAYICGEETALIE 223 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++GFG NNRGTK Sbjct: 224 SLEGRQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVSPTILRRGASWFAGFGNPNNRGTK 283 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV P VEESMSI ELIEKHCGG+R GWD L A IPGGSSVP L Q Sbjct: 284 LFAISGHVKNPIVVEESMSIPLQELIEKHCGGMRNGWDTLQACIPGGSSVPVLNKAQCDE 343 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+M++D L+ GSGLGTAAV + D S D++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 344 ALMEFDDLRAKGSGLGTAAVTMFDNSVDMVGAIRRLSHFYKHESCGQCTPCREGTSWLED 403 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+ IE+RID Sbjct: 404 ILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRIDD 461 >gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] Length = 597 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 165/424 (38%), Positives = 252/424 (59%), Gaps = 6/424 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI N + L D ++ ++ + K L + I+ EVK SGLRGRGGAG Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMAPEAIVEEVKESGLRGRGGAG 171 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 FSTG+KWS SD Y++ NADE +PG DR ++ +PH +IEG +I ++AIGA Sbjct: 172 FSTGLKWSLCRATPSD-KKYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ ++LQ A+ + +G LG+N G++ + ++ GAGA++CGEETAL Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR++PPFPA GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G VN VE M + ++I GGI+ AV GG S CLP M Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDIGGGIK-DGKKFKAVQIGGPSGGCLPED-M 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L + G+ +G+ +++MD +T ++ F + ESCG+CTPCREG M Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++R+ +G ++ +I+ L ++ ++ ++C LG A PI +K FR EE I Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI-H 527 Query: 419 YHRC 422 +C Sbjct: 528 AKKC 531 >gi|326387456|ref|ZP_08209065.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM 19370] gi|326208112|gb|EGD58920.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM 19370] Length = 430 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 299/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG Q +L+ + +RG WDN +LE+GRD II E+K SGLRGRGGAGF Sbjct: 3 LADKDRIFTNLYGFQPWNLAAARARGDWDNTKALLERGRDAIIQEMKDSGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+GA Sbjct: 63 TGMKWSFMPKESRDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMGARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE E+L AAV E Y +GL+G N+ GYD D+ VH GAGAYICGEETA++ Sbjct: 123 AYIYIRGEYIREAETLFAAVREAYDAGLIGRNASGSGYDFDVFVHRGAGAYICGEETAMI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGA+W+S FGR+NN+GT Sbjct: 183 ESIEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRDNNKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV+ PC VEE MSI F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P+ Q+ Sbjct: 243 KLFQISGHVDKPCVVEEEMSIPFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPSEQIM 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + Sbjct: 363 RVMERLRTGDASVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 421 >gi|307293265|ref|ZP_07573111.1| NADH-quinone oxidoreductase, F subunit [Sphingobium chlorophenolicum L-1] gi|306881331|gb|EFN12547.1| NADH-quinone oxidoreductase, F subunit [Sphingobium chlorophenolicum L-1] Length = 438 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 297/421 (70%), Positives = 344/421 (81%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q + +M RG WDN K++E G+D II +KASGLRGRGGAGF Sbjct: 8 LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTRKLMEIGQDEIIERIKASGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A Sbjct: 68 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIVRHDPHKLIEGALIAGFAMRARA 127 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFI E + L AAV++ Y G LG N+ GYD D+ VH GAGAYICGEETA + Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRG+ W+S FGRENN+GT Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRGSEWFSSFGRENNKGT 247 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 307 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 308 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMERL G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++ Sbjct: 368 RVMERLRSGDADISEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINEN 427 Query: 420 H 420 Sbjct: 428 K 428 >gi|103486791|ref|YP_616352.1| NADH dehydrogenase I subunit F [Sphingopyxis alaskensis RB2256] gi|98976868|gb|ABF53019.1| NADH-quinone oxidoreductase, F subunit [Sphingopyxis alaskensis RB2256] Length = 430 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 298/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG Q +L + +RG WDN ++++G+D II E+KASGLRGRGGAGF Sbjct: 3 LADKDRIFTNLYGFQPWNLKAAQARGDWDNTRDLMKRGQDAIIEEIKASGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A Sbjct: 63 TGLKWSFMPKEPRADRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRE E+L AAV E Y +GLLG N+ K GYD D+ VH GAGAYICGEETA++ Sbjct: 123 AYIYIRGEFIREAETLFAAVQEAYDAGLLGKNAAKSGYDFDVFVHRGAGAYICGEETAMI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGRENN+GT Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAPWFASFGRENNKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 243 KLFQISGHVNKPCVVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAEIM 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+DGLK +GSGLGTAA IVMD+STD+++AI R+S FYKHESCG CTPCREGTGWM Sbjct: 303 DCPMDFDGLKAVGSGLGTAAAIVMDKSTDVVQAISRISYFYKHESCGHCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI + Sbjct: 363 RVMERLRTGDADISEIDTLFDVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIRE 421 >gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 607 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 162/425 (38%), Positives = 251/425 (59%), Gaps = 6/425 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI T NL + + + ++R + + K L+ + +I E+K SGLRGRGGAG Sbjct: 111 FFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 170 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + ++ ++V NADE +PG DR ++ +PH +IEG IA++AIGA Sbjct: 171 FPTGLKWELAARQKAE-KKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 229 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 F+YVR E+ E L A+++ G LG N + DI + GAGA++CGEETAL Sbjct: 230 KGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETAL 289 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++GQP++KPP+P GL+G PT +NNVE++A VP I+R GA + +G EN+ G Sbjct: 290 MASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPG 349 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V VE M IT ELI + GGI G L A+ GG S C+PA + Sbjct: 350 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGD-KKLKAIQTGGPSGGCIPAEYV 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D++ L+++G+ +G+ +IVMD ++ F ESCG+CTPCREGT M Sbjct: 409 -DTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 467 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++E++ G + +I+ L +++ ++ ++C LG A P+ ++ FR + + Sbjct: 468 LEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVKE 527 Query: 419 YHRCN 423 RC Sbjct: 528 -KRCP 531 >gi|332185757|ref|ZP_08387504.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17] gi|332014115|gb|EGI56173.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17] Length = 436 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 303/422 (71%), Positives = 350/422 (82%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q ++ +M RG WDN +LE G+D II+ +KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGYQPWNVDAAMKRGDWDNTKALLELGQDKIIDVIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 61 PTGMKWSFMPKEPRPDRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE E+L AAV E Y G LG N+ GYD D+ VH GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAETLFAAVAEAYDRGFLGKNACGSGYDFDVFVHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGA W+S FGRENN+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAEWFSSFGRENNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHV+ PC VEESMSI+F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 241 TKLFQISGHVDRPCVVEESMSISFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPAAEI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 MDAPMDFDGLKAVGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMER+ G A EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI + Sbjct: 361 WRVMERMRTGDADVSEIDTLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMERRIRE 420 Query: 419 YH 420 Sbjct: 421 RK 422 >gi|118367869|ref|XP_001017144.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena thermophila] gi|89298911|gb|EAR96899.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena thermophila SB210] Length = 474 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 278/421 (66%), Positives = 331/421 (78%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY + ++ RG W +IL G +WII+E+K SGLRGRGGAGF Sbjct: 35 LKDQDRIFTNLYRDGDPFVKGALKRGDWHQTKEILSNGPEWIIDEIKKSGLRGRGGAGFL 94 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D YLV+N+DESEPGTCKDR+I+R++PH L+EG ++ F++ A Sbjct: 95 SGLKYSFMPKVNPDGRPSYLVINSDESEPGTCKDREILRNDPHKLVEGALVVGFSMRARA 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE YA G +G N+ GYD D+ +H GAGAYICGEET L+ Sbjct: 155 AYIYIRGEFWVEANILQQAIDEAYAKGFIGKNACGSGYDFDVYIHRGAGAYICGEETGLI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK GQPR+KPPFPAN GLYGCPTTV NVE++AV PTI+RRGASW++ FGR NN GT Sbjct: 215 ESIEGKAGQPRVKPPFPANAGLYGCPTTVTNVETVAVCPTIMRRGASWFASFGRPNNAGT 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PCTVEE MSI EL+EKHCGG+RGGWDNLLAVIPGGSSVP +P Sbjct: 275 KLYCISGHVNNPCTVEEEMSIPLRELLEKHCGGVRGGWDNLLAVIPGGSSVPMMPKNVCD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK +GSGLGTAAVIVMD+STD I AI RLS FYKHESCGQCTPCREGTGW++ Sbjct: 335 DVLMDFDALKAVGSGLGTAAVIVMDKSTDPIDAILRLSKFYKHESCGQCTPCREGTGWIV 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VMERL+ G A EID+L +V++ IE TICALGDAAAWP+QGLIKNFR IE+RID Y Sbjct: 395 DVMERLLVGNADYAEIDMLQQVTQQIEMHTICALGDAAAWPVQGLIKNFREEIEDRIDSY 454 Query: 420 H 420 H Sbjct: 455 H 455 >gi|294083716|ref|YP_003550473.1| NADH-quinone oxidoreductase subunit F [Candidatus Puniceispirillum marinum IMCC1322] gi|292663288|gb|ADE38389.1| NADH-quinone oxidoreductase, F subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 430 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 301/421 (71%), Positives = 340/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YG L+ + RG WDN IL+ G I+ +KASGLRGRGGAGF Sbjct: 1 MLKDADRIFTNIYGWNDAMLAGAKKRGDWDNTAAILKLGHGEIVERMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ DRPHYLVVNADESEPGTCKDRDI+RHEPH L+EGCV+A FA+ AH Sbjct: 61 PTGLKWSFMPQEVRDRPHYLVVNADESEPGTCKDRDIIRHEPHKLLEGCVVAGFAMRAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF+ E LQAA+DE Y +GLLG N+ K G+D DI +H GAGAYICGEETALL Sbjct: 121 AYIYIRGEFVNEARRLQAAIDEAYDAGLLGKNAAKSGWDFDIYLHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG+ W++G G+ENN GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGSDWFAGLGKENNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I EL+EKH GG+RGGWDNLLAVIPGGSS P +P Sbjct: 241 KLFCISGHVNKPCNVEEEMGIPLKELLEKHAGGVRGGWDNLLAVIPGGSSTPMMPKDTCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+E G+GLGTA VIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 TMTMDFDALREAGTGLGTAGVIVMDKSTDVVKAISRLSYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+MERLV+G A+ EID LYEV+K +EG TICALGDAAAWPIQGLIK+FRP IE RI Sbjct: 361 RMMERLVRGEAEPHEIDTLYEVTKQVEGHTICALGDAAAWPIQGLIKHFRPEIERRIAAR 420 Query: 420 H 420 H Sbjct: 421 H 421 >gi|303311397|ref|XP_003065710.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105372|gb|EER23565.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] Length = 529 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 79 LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498 Query: 418 QYHRCN 423 ++ + N Sbjct: 499 KFAQQN 504 >gi|83592895|ref|YP_426647.1| NADH dehydrogenase I subunit F [Rhodospirillum rubrum ATCC 11170] gi|83575809|gb|ABC22360.1| NADH-quinone oxidoreductase, F subunit [Rhodospirillum rubrum ATCC 11170] Length = 429 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 295/421 (70%), Positives = 339/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L+ + RG WD IL KGRD IINE+KASGLRGRGGAGF Sbjct: 1 MLNDKDRIFTNLYGFQDWRLAGARKRGDWDGTGAILAKGRDGIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK +RPHYLVVNADE EPGTCKDRD+MR +PH LIEGC+IA FA+GAH Sbjct: 61 PTGLKWSFMPKDIGERPHYLVVNADEGEPGTCKDRDMMRFDPHKLIEGCLIAGFAMGAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF RE E L+ A+ E +GLLG N+ G+D+++ VH GAGAYICGEETAL+ Sbjct: 121 AYIYIRGEFFREAEHLEFAIAEAREAGLLGPNACGSGWDMEVYVHRGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++G GRENN GT Sbjct: 181 QSLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGRENNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I ELI+KH GG+RGGWDNLL VIPGG+SVP LP Sbjct: 241 KVFCISGHVNKPCNVEEEMGIPLRELIDKHAGGVRGGWDNLLGVIPGGASVPVLPRELCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTAAV+VMD+STDI++AI RLS FY HESCGQCTPCREGTGW+ Sbjct: 301 DVLMDFDSLKAVKSGLGTAAVMVMDKSTDIVRAIARLSAFYTHESCGQCTPCREGTGWLS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLV G A EID+L +V++ IEG TICALGDAAAWPIQGLI++FRP IE RI + Sbjct: 361 RVMTRLVNGDAAIEEIDVLEQVTRQIEGHTICALGDAAAWPIQGLIRHFRPEIERRIIEK 420 Query: 420 H 420 Sbjct: 421 R 421 >gi|77463076|ref|YP_352580.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides 2.4.1] gi|77387494|gb|ABA78679.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Rhodobacter sphaeroides 2.4.1] Length = 431 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 291/421 (69%), Positives = 348/421 (82%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+Q +SL +M+RG WD +L GRD II+ VKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGQNAAKSGYDFDVYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV+P ILRRG W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC +EESMSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Q Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYDG++E+ S GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV+G A+ EID+L V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAK 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|156042201|ref|XP_001587658.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Sclerotinia sclerotiorum 1980] gi|154696034|gb|EDN95772.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Sclerotinia sclerotiorum 1980 UF-70] Length = 508 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 270/426 (63%), Positives = 321/426 (75%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L+ + G W IL KG DWII+E+KASGLRGRGGAGF Sbjct: 59 LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 118 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM + P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ Sbjct: 119 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 178 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 179 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 238 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+IAV PTI RRG W++ FGRE N Sbjct: 239 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 298 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 299 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKNV 358 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 359 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 418 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 419 TEQIMQRFEKGQGKIREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 478 Query: 418 QYHRCN 423 Y N Sbjct: 479 DYAEKN 484 >gi|119194275|ref|XP_001247741.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Coccidioides immitis RS] Length = 529 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 79 LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498 Query: 418 QYHRCN 423 ++ + N Sbjct: 499 KFAQQN 504 >gi|126461948|ref|YP_001043062.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17029] gi|221638932|ref|YP_002525194.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides KD131] gi|332557949|ref|ZP_08412271.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N] gi|126103612|gb|ABN76290.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides ATCC 17029] gi|221159713|gb|ACM00693.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides KD131] gi|332275661|gb|EGJ20976.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N] Length = 431 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 291/421 (69%), Positives = 348/421 (82%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+Q +SL +M+RG WD +L GRD II+ VKASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGRNAAKSGYDFDVYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV+P ILRRG W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC +EESMSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Q Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYDG++E+ S GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV+G A+ EID+L V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAK 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|296283840|ref|ZP_06861838.1| NADH dehydrogenase I subunit F [Citromicrobium bathyomarinum JL354] Length = 431 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 298/419 (71%), Positives = 347/419 (82%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG Q L + +RG WD+ +L KG+D II+++KASGLRGRGGAGF Sbjct: 3 LQDKDRIFTNLYGFQDWGLKAAQARGDWDDTKALLAKGQDSIIDDMKASGLRGRGGAGFP 62 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D +LV+NADESEPG+CKDR+IMRH+PH LIEG ++A FA+ A Sbjct: 63 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIMRHDPHKLIEGALVAGFAMRARA 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE E+LQ A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+ Sbjct: 123 AYIYIRGEYIREAETLQKAIDEAYDAGLIGKNACGSGYDYDVFLHRGAGAYICGEETALI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRG SW++ FGRE N GT Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPSWFASFGREKNDGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHV PC VEE MSI F ELIE+HCGG+RGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 243 KLFQISGHVEKPCVVEEEMSIPFRELIERHCGGVRGGWDNLLAVIPGGSSVPLVPAEQIM 302 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGLKE+GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 303 DAPMDFDGLKELGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWMW 362 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVM+RL G A EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP +E RI + Sbjct: 363 RVMKRLETGDADIDEIDMLHTVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIAE 421 >gi|320039567|gb|EFW21501.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coccidioides posadasii str. Silveira] Length = 529 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 79 LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498 Query: 418 QYHRCN 423 ++ + N Sbjct: 499 KFAQQN 504 >gi|189183823|ref|YP_001937608.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str. Ikeda] gi|189180594|dbj|BAG40374.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Ikeda] Length = 422 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 272/421 (64%), Positives = 326/421 (77%), Gaps = 2/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +D+IFTNL G L+ + RG W ++ R+WII E+K SGLRGRGGAGF Sbjct: 1 MLNIEDKIFTNLSGSMAVDLASAKKRGDWHATKDLILNSREWIIEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S++ YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA Sbjct: 61 PTGLKWSFMPKN-SEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E LQ A+ E Y + L+G NS ++ ++ +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYDARLIGLNSCGTDFNFNLYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPAN+GLYGCPTT+NNVESIAVVPTILRRGA W++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPANIGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FSISGHVN PC +EE+M + LIEK+ GG+RGGWDNL A+IPGGSSVP +P Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D LK +GSGLGT +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TVEMDFDSLKSVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M RLVKG A +ID+L +V+K IEG TICALGDAAAWPIQGLIK+FR IE+RI + Sbjct: 360 RIMMRLVKGSASVSDIDMLLDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419 Query: 420 H 420 + Sbjct: 420 N 420 >gi|89053670|ref|YP_509121.1| NADH dehydrogenase I subunit F [Jannaschia sp. CCS1] gi|88863219|gb|ABD54096.1| NADH dehydrogenase subunit F [Jannaschia sp. CCS1] Length = 431 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 309/419 (73%), Positives = 358/419 (85%), Gaps = 2/419 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG+ +SL+ + RGHWD ++ GRD I+ +KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGMHDRSLAGAKQRGHWDGTKDLIGLGRDKIVEIMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+ A+ Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMNANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+DE Y GLLG ++ K G+D D+ + HGAGAYICGEETALL Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEDGLLGKDAAKSGWDFDLYLAHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT Sbjct: 181 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVPC+ MR Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300 Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 AIMD+D L+ ++ SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DAIMDFDYLRNDLQSGLGTAAVIVMDNSTDMIKAIWRLAAFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MRVMERLVKG AQ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 MRVMERLVKGEAQVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIR 419 >gi|319407262|emb|CBI80901.1| NADH dehydrogenase I chain F [Bartonella sp. 1-1C] Length = 435 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 321/425 (75%), Positives = 367/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + KSL ++ RGHWD I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPIVRGEDMIN 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK IEG TICALGDAAAWPIQGLI+NFR IE RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQIEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAVQ 425 >gi|85374157|ref|YP_458219.1| NADH dehydrogenase I subunit F [Erythrobacter litoralis HTCC2594] gi|84787240|gb|ABC63422.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter litoralis HTCC2594] Length = 430 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 293/422 (69%), Positives = 352/422 (83%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG Q L + +RG WD+ ++ +G + II E+K SGLRGRGGAGF Sbjct: 1 MLADKDRIFTNVYGFQDWGLKAAQARGDWDDTKALIARGEENIIEEIKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 61 PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGE+IRE E+LQAA+DE Y +GL+G N+ G+D D+ +H GAGAYICGEETA+ Sbjct: 121 AAYIYIRGEYIREAETLQAAIDEAYDAGLIGKNASGSGFDYDVFLHRGAGAYICGEETAM 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVVPTILRRG +W++ FGRENN G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGNWFASFGRENNHG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHV PC VEE+MSI F+ELIEKHCGGI GGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGITGGWDNLLAVIPGGSSVPLVPAEQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM Sbjct: 301 RQAPMDFDGLKDVGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+MERL G A EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++ Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420 Query: 419 YH 420 ++ Sbjct: 421 HN 422 >gi|83025076|ref|NP_001032653.1| hypothetical protein LOC641566 [Danio rerio] gi|82414771|gb|AAI10121.1| Zgc:123290 [Danio rerio] Length = 479 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 270/419 (64%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L + +RG W ++L KG +WI+NE+K SGLRGRGGAGF Sbjct: 48 LSDEDRIFTNLYGRHDWRLKGAEARGDWYKTKEVLLKGHEWILNEMKKSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 108 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +G LG N+ GYD D+ VH GAGAYICGE+TAL+E Sbjct: 168 YIYIRGEFYNEGTNLQVAIHEAYKAGYLGKNACNSGYDFDVFVHRGAGAYICGEKTALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI+RRG W++ GR N GTK Sbjct: 228 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTIVRRGGEWFASLGRPRNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI EL+EKH GG+ GGWDNLLA+ PGGSSVP LP Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELVEKHAGGVLGGWDNLLAITPGGSSVPMLPKNLCEE 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVM++ TD++KAI RLS FYKHESCGQCTPCREGTGW+ + Sbjct: 348 VLMDFDSLLAAQSGLGTAAVIVMNKQTDVVKAIARLSEFYKHESCGQCTPCREGTGWLTK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R V G A+ EID+++E++K IEG TICALGDAAAWP+QGLI++FRP +E R+ +Y Sbjct: 408 MMYRFVDGNARPEEIDMIWELTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMQEY 466 >gi|225708652|gb|ACO10172.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Osmerus mordax] Length = 472 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 278/421 (66%), Positives = 336/421 (79%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLYG L ++SRG W +IL KG DWIINE+K+SGLRGRGGAGF Sbjct: 46 LSDQDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGVDWIINEIKSSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A +GA A Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRCMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E YA+GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNESSNLQVAINEAYANGLIGRNACGSGYDFDVFVMRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN P TVEE MSI ELIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 286 LFNISGHVNTPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAVIPGGSSTPMIPRSVCET 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + +GLGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG WM Sbjct: 346 VLMDFDGLIQAQTGLGTAAIIVMDKSTDVIKAIARLIEFYKHESCGQCTPCREGVDWMNT 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G A++ EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ Sbjct: 406 MMWRFVRGDAKEAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEFQ 465 Query: 421 R 421 Sbjct: 466 E 466 >gi|308811771|ref|XP_003083193.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS) [Ostreococcus tauri] gi|116055072|emb|CAL57468.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS) [Ostreococcus tauri] Length = 491 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 285/416 (68%), Positives = 340/416 (81%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L +M+RG W K++E G DWI+NE+KASGLRGRGGAGF Sbjct: 65 LSDADRIFTNLYGRHDPFLKGAMARGDWYETKKLVELGADWIVNEMKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA A+ A A Sbjct: 125 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 184 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A+ E YA+G LG ++ G D D+ +H+GAGAYICGEETAL+E Sbjct: 185 YIYIRGEYVNERLALERALAEAYAAGFLGKDACGTGLDFDVNIHYGAGAYICGEETALIE 244 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 245 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGPEWFASFGRKNNAGTK 304 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGWDNLLAVIPGGSSVP + Sbjct: 305 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAVIPGGSSVPMITKDVCDD 364 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK +GSGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 365 VLMDFDALKGVGSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTSWIYN 424 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +M+RLVKG A+ E+++L E++K IEG TICALGDAAAWP+QGL+KNF PLI ERI Sbjct: 425 IMKRLVKGDARLEEVEMLQEITKQIEGHTICALGDAAAWPVQGLLKNFSPLIRERI 480 >gi|302684473|ref|XP_003031917.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8] gi|300105610|gb|EFI97014.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8] Length = 501 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 272/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN Y L + SRG W I+ KG WII +K SGLRGRGGAGF Sbjct: 40 LKDQDRIFTNAYCRHDHGLKGAKSRGDWHRTKDIILKGDSWIIQTIKDSGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLVVNADE EPGTCKDR+I+R +PH LIEGC++A A+ A Sbjct: 100 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 159 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF +E +Q A++E YA+GL+G ++ GY D+ +H GAGAYICGEETA Sbjct: 160 TAAYIYIRGEFFQEASHVQQAINEAYAAGLIGKDACGSGYSFDVYLHRGAGAYICGEETA 219 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N+ Sbjct: 220 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNQ 279 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PC VEE MSI +LIEKHCGG+ GGWDNLL ++PGGSSVP LP + Sbjct: 280 GTKLFCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVIGGWDNLLGIVPGGSSVPILPIDK 339 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ SGLGT AVIVMD+STD++ AI R + FYKHESCGQCTPCREGT W Sbjct: 340 CSEVLMDYDSLKDAQSGLGTGAVIVMDKSTDVVSAIARFASFYKHESCGQCTPCREGTTW 399 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M R+V+G REID+L E+SK IEGRTICALGDAAAWPIQGL+++FRP +E+RI+ Sbjct: 400 MMNMMNRMVEGRGHVREIDMLLEISKQIEGRTICALGDAAAWPIQGLMRHFRPEVEKRIE 459 Query: 418 QYHRCN 423 ++ R N Sbjct: 460 EFRRAN 465 >gi|125559373|gb|EAZ04909.1| hypothetical protein OsI_27090 [Oryza sativa Indica Group] Length = 529 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 101 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 160 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 161 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 220 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 221 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 280 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 281 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 340 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 341 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 400 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 401 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 460 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 461 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 508 >gi|225713920|gb|ACO12806.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Lepeophtheirus salmonis] Length = 463 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 325/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +MSRG W +I+ KG DWIINEVK SGLRGRGGAGF Sbjct: 34 LKDSDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIINEVKVSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 94 SGMKWSFMQKPDDGRPKYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 153 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGEF E +LQ A+ E Y G LG NS GYD D+ VH GAGAYICGEETAL+E Sbjct: 154 YIYVRGEFYNETTNLQVAIKEAYTKGFLGKNSCGTGYDFDVFVHRGAGAYICGEETALIE 213 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+S FGR N GTK Sbjct: 214 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGTWFSSFGRPRNTGTK 273 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF++SGHVN PCTVEE MS+ ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 274 LFNVSGHVNNPCTVEEEMSVPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPKHVCND 333 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ D++KAI RL+ FYKHESCGQCTPCREG WM Sbjct: 334 VMMDFDALIAAQTGLGTAAVIVMNKQCDVVKAIARLATFYKHESCGQCTPCREGCNWMDT 393 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V+G AQ EID+L+E++K IEG TICAL D AAWP+QGLI++FRP +E R ++YH Sbjct: 394 MMWRFVEGNAQAGEIDMLWELTKQIEGHTICALADGAAWPVQGLIRHFRPELEARFEEYH 453 Query: 421 R 421 R Sbjct: 454 R 454 >gi|327260438|ref|XP_003215041.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Anolis carolinensis] Length = 467 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 282/425 (66%), Positives = 334/425 (78%), Gaps = 1/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 39 LKDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILNEIKTSGLRGRGGAGFP 98 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 99 TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 158 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 159 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVARGAGAYICGEETALIE 218 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW+ GFGRE N GTK Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFVGFGRERNSGTK 278 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG++GGWDNLLAVIPGGSS P +P Sbjct: 279 LFNISGHVNTPCTVEEEMSIPLRDLIERHAGGVKGGWDNLLAVIPGGSSTPLIPKSVCET 338 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + +GLGTAAVIVMD+STD+++AI RL FYKHESCGQCTPCREG WM + Sbjct: 339 VLMDFDGLIQAQTGLGTAAVIVMDKSTDLVRAIARLIEFYKHESCGQCTPCREGVDWMNK 398 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R VKG AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ QYH Sbjct: 399 VMWRFVKGNAQVAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRQYH 458 Query: 421 RCNFQ 425 Q Sbjct: 459 ESKAQ 463 >gi|159489210|ref|XP_001702590.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas reinhardtii] gi|158280612|gb|EDP06369.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas reinhardtii] Length = 484 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 283/417 (67%), Positives = 337/417 (80%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF N+YG S+ +MSRG W +I+ KGRDWII+++K SGLRGRGGAGF Sbjct: 56 LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A A+GA Sbjct: 116 SGLKWSFMPKASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF++ER +++ A+ E YA G LG N+ G D D++VH+GAGAYICGEETAL+E Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN P TVEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP LP G Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR +EERI Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERIK 472 >gi|83311881|ref|YP_422145.1| NADH dehydrogenase I subunit F [Magnetospirillum magneticum AMB-1] gi|82946722|dbj|BAE51586.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 427 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 295/417 (70%), Positives = 337/417 (80%), Gaps = 1/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTNLYG+ L +M+RG W+ IL KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLRDSDRIFTNLYGIHDWRLKGAMARGDWNGTKDILAKGRDWIIEEMKNSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IASFAIGAH Sbjct: 61 PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIASFAIGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF+RE E L A+DE A+GLLG N+ G+D ++ VH GAGAYICGEE+AL+ Sbjct: 121 AYIYIRGEFVREAEHLNIAIDEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I ELIEKH GG+RGGWDNLLA+IPGGSSVP L Q Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLAIIPGGSSVPMLTKQQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ M SGLGTAAV+VMD+STD+++AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 EVTMDFDALRAMRSGLGTAAVMVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+M R+V G A+ EIDLL E+S+ IEG TICALGDAAAWPIQGLI+ FRP +E RI Sbjct: 361 RMMGRMVTGDAELSEIDLLEEISRQIEGHTICALGDAAAWPIQGLIRAFRPEMERRI 417 >gi|162148806|ref|YP_001603267.1| NADH dehydrogenase I subunit F [Gluconacetobacter diazotrophicus PAl 5] gi|209545446|ref|YP_002277675.1| NADH dehydrogenase subunit I F [Gluconacetobacter diazotrophicus PAl 5] gi|161787383|emb|CAP56978.1| NADH-quinone oxidoreductase chain F [Gluconacetobacter diazotrophicus PAl 5] gi|209533123|gb|ACI53060.1| NADH-quinone oxidoreductase, F subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 441 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 290/421 (68%), Positives = 341/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG Q L+ + +RG WD +I+ +GRD IINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGQQDWRLAGARARGDWDGTAEIIARGRDAIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR+I+RH+PH LIE +IASFA+GAH Sbjct: 61 PTGVKWSFMPKNSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE YA+GL+G N+ G+D D +H GAGAYICGEETALL Sbjct: 121 AYIYIRGEFFNEARHLQIAIDEAYAAGLIGQNAAGSGWDFDFYIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV TILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVAATILRRGATWFSSLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + ++IEKH GG+RGGWDNLLAVIPGGSSVP LPA Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKDIIEKHGGGVRGGWDNLLAVIPGGSSVPLLPASVCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ SGLGTA +IVMD+STD+I+AI R S FYKHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDVIRAIARFSQFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM R+V+G A+ EID+L +V++ +EG TICALGDAAAWPIQGLI++FRP++EERI Y Sbjct: 361 RVMHRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRHFRPVMEERIRAY 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|148555895|ref|YP_001263477.1| NADH dehydrogenase I subunit F [Sphingomonas wittichii RW1] gi|148501085|gb|ABQ69339.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas wittichii RW1] Length = 432 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 296/420 (70%), Positives = 345/420 (82%), Gaps = 2/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG Q +L + RG WD+ +L +G D II ++KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFTNVYGFQPWNLEAARKRGDWDDTKALLARGPDQIIEDIKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A Sbjct: 61 PTGMKWSFMPKEPKPGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEFI E + L AAV+E YA+GLLG N+ GYD D+ VH GAGAYICGEETA Sbjct: 121 AAYIYIRGEFIYEAKVLFAAVEEAYAAGLLGKNAAGSGYDFDVFVHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRRGA+W++G GRE N+G Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGREGNKG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PC VEE+M I F ELI++H GGIRGGWDNLLAVIPGGSSVP +PA Q+ Sbjct: 241 TKLFQISGHVNKPCVVEEAMGIPFRELIDRHAGGIRGGWDNLLAVIPGGSSVPLVPAAQI 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 MDAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A+ EID L +V+K +EG TICALGDAAAWPIQGL+++FRP +E RI + Sbjct: 361 WRVMERLRTGEARIDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLLRHFRPEVERRIRE 420 >gi|328856677|gb|EGG05797.1| hypothetical protein MELLADRAFT_43743 [Melampsora larici-populina 98AG31] Length = 510 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 266/426 (62%), Positives = 329/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N Y L + +RG W I+ KG D++I E+K SGLRGRGGAGF Sbjct: 49 LRDSDRIFQNAYMRHDHLLKGAQARGDWHRTKDIILKGHDYLIKEIKDSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQ A++E Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 169 SAAYIYIRGEFIMEAAHLQNAIEEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PC VEE MSI +LI+KHCGG+ GGWDNLL ++PGGSSVP L + Sbjct: 289 GTKLFCISGHVNTPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 A+MD+D LK++ SGLGT AVIVM++STD+I AI R + FYKHESCGQCTPCREGT W Sbjct: 349 CEEALMDFDSLKDLQSGLGTGAVIVMNKSTDMISAIARFAKFYKHESCGQCTPCREGTTW 408 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++M+RLV G A +RE+D+L+E+++ IEG TICALGDAAAWPIQGL++ F+P +E RI Sbjct: 409 MEKIMDRLVVGRAHERELDMLWELTRQIEGHTICALGDAAAWPIQGLLRKFKPEVEARIQ 468 Query: 418 QYHRCN 423 ++ N Sbjct: 469 EFRSKN 474 >gi|240850588|ref|YP_002971988.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup] gi|240267711|gb|ACS51299.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup] Length = 435 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 316/421 (75%), Positives = 371/421 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +M RGHW+ + ++++KGRDWII+EVKASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEMIDKGRDWIIDEVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIY+RGE+IRERE+LQAAVDECY +GLLG +K G+ DII+HHGAGAYICGEETALLE Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT E+++ ++F ELIEKH GG+RGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGVRGGWNNLLAVIPGGASCPVVRGEDMID 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420 Query: 421 R 421 R Sbjct: 421 R 421 >gi|119384975|ref|YP_916031.1| NADH dehydrogenase I subunit F [Paracoccus denitrificans PD1222] gi|119374742|gb|ABL70335.1| NADH dehydrogenase subunit F [Paracoccus denitrificans PD1222] Length = 431 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 307/418 (73%), Positives = 354/418 (84%), Gaps = 1/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL+ + RGHWD I+++GRD II+E+KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRERE+LQAA+DECY +GLLG N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ++GHVN PC VEE+MSI ELIEKH GGIRGGW NL AVIPGG+S P L A Q Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMDYDG++E+ S GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 NAIMDYDGMRELRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVMERLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIK 418 >gi|299135027|ref|ZP_07028218.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2] gi|298590004|gb|EFI50208.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2] Length = 441 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 299/422 (70%), Positives = 347/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L + RG WD I++KGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKAIIDKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRERE LQAAVD+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AAYIYIRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++ GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VE+++ ITF ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLFGISGHVNTPCVVEDALGITFKELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAHDCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 TR 422 >gi|115524534|ref|YP_781445.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisA53] gi|115518481|gb|ABJ06465.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris BisA53] Length = 441 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 300/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF N+YGL L + RG WD I++KG+DWIINE+KASGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNVYGLGDWGLDGARRRGGWDGTKAIIDKGKDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++ASFA+GAH Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 A++YVRGEFIRERE LQAA+D+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 TAYVYVRGEFIRERERLQAAIDQAYEARLIGKDNIHGWPFDLYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++ GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFASIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA + Sbjct: 241 KLFGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A +REID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLSRMVEGRAHRREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|319404254|emb|CBI77847.1| NADH dehydrogenase I chain F [Bartonella rochalimae ATCC BAA-1498] Length = 435 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 320/425 (75%), Positives = 368/425 (86%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YG + KSL ++ RGHWD I+EKGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ Sbjct: 61 PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 AFIYVRGE+IRERE+LQAA+DECY +GLLG +K G+ DIIVHHGAGAYICGEETALLE Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P + M Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DG++++GS GT +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR IE RID Y Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420 Query: 421 RCNFQ 425 R Q Sbjct: 421 RSAVQ 425 >gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] Length = 610 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 162/420 (38%), Positives = 248/420 (59%), Gaps = 5/420 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q +I T NL + + + ++R + + K L+ + +I E+K SGLRGRGGAG Sbjct: 114 FFKKQVKIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 173 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW K ++ ++V NADE +PG DR ++ +PH +IEG IA++AIGA Sbjct: 174 FPTGLKWELAAKQKAE-KKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 232 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 F+YVR E+ E L A+++ G LG N + DI + GAGA++CGEETAL Sbjct: 233 KGFVYVRAEYPLAIERLSIALEQAREYGFLGENIMGTDFSFDIEIRIGAGAFVCGEETAL 292 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++GQPR+KPP+P GL+G PT +NNVE++A VP I+R GA + +G E + G Sbjct: 293 MASIEGERGQPRVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTETSPG 352 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V VE M IT ELI + GGI G L AV GG S C+PA + Sbjct: 353 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIVGD-KKLKAVQTGGPSGGCIPAEYI 411 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D++ L+++G+ +G+ +IVMD ++ F ESCG+CTPCREGT M Sbjct: 412 -DTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 470 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++E++ G + +I+ L +++ I+ ++C LG A P+ ++ FR + + Sbjct: 471 LEILEKITSGEGTEEDIEELEKLANVIKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVRE 530 >gi|242019360|ref|XP_002430129.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus humanus corporis] gi|212515220|gb|EEB17391.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus humanus corporis] Length = 472 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 265/420 (63%), Positives = 323/420 (76%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L + RG W +IL KG DWIINE+K SGLRGRGGAGF Sbjct: 45 LCDDDRIFTNLYGRHDWRLCGAYKRGDWYKTKEILHKGPDWIINEIKISGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+I+R++PH LIEGC++A A+GA A Sbjct: 105 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREILRNDPHKLIEGCLVAGRAMGAQAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 165 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++G++GCPTTV+NVE++AV PTI RRG SW++ FGR N GTK Sbjct: 225 SIEGKQGKPRLKPPFPADIGVFGCPTTVSNVETVAVAPTICRRGGSWFASFGRPRNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELI+ H G + GGWDNLLA+IPGGSS P +P Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIQLHAGDVIGGWDNLLAIIPGGSSTPLIPKDVCEE 344 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AIMD+DGL + + LGTAAVIVM++ TDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 345 AIMDFDGLVAVQTSLGTAAVIVMNKQTDIVKAIARLIEFYKHESCGQCTPCREGINWMNK 404 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R + G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R++ Sbjct: 405 IIHRFITGNAEPGEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMENKQ 464 >gi|329114683|ref|ZP_08243442.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001] gi|326696163|gb|EGE47845.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001] Length = 442 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 292/421 (69%), Positives = 337/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L + RG WDN I+ KGRD +I E+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGQDDWRLPAARKRGDWDNTAAIIAKGRDAVIAEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR++MRHEPH LIE +IASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF RE E LQAA+DE Y +GLLG N+ G+D D +H GAGAYICGEETALL Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGTGWDFDFRIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA GLYGCPTTVNNVESIAV TI+RRGA+W+SG GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + ++ E+IEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 241 KLMAISGHVNTPCVFEEELGVSLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M R+V+G A+ EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY Sbjct: 361 RMMNRMVQGKAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|51230625|ref|NP_001003747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial precursor [Danio rerio] gi|50925098|gb|AAH78648.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Danio rerio] gi|94733524|emb|CAK04074.1| novel protein (zgc:86620) [Danio rerio] Length = 492 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 334/421 (79%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL+KG DWI+NE+K SGLRGRGGAGF Sbjct: 66 LADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFP 125 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A A+GA A Sbjct: 126 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAA 185 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E YA+GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 186 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEETALIE 245 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 246 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 305 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 306 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDT 365 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + +GLGTAA+IVMD+STD+I+AI RL FYKHESCGQCTPCREG WM + Sbjct: 366 VLMDFDALIQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 425 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG A+ EID+++E+SK IEG TICALGD AAWP+QGLI++FRPL+E RI + Sbjct: 426 MMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLMESRIADFQ 485 Query: 421 R 421 + Sbjct: 486 Q 486 >gi|321258005|ref|XP_003193778.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus gattii WM276] gi|317460248|gb|ADV21991.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Cryptococcus gattii WM276] Length = 495 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 266/423 (62%), Positives = 329/423 (77%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNL+ + +++RG W I+ KG WII VK SGLRGRGGAGF Sbjct: 36 LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWIIQTVKDSGLRGRGGAGFP 95 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 96 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 155 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E +Q A+DE Y +GL+G N+ GYD D+ +H GAGAYICGEETA Sbjct: 156 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 215 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N Sbjct: 216 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 275 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK++ +SGHVN PC VEE MSI EL+EKHCGG+RGGW NL ++PGGSSVP + Sbjct: 276 GTKVYCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVITRET 335 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ G+ LGT AVIVMD +TD+I AI R S FYKHESCGQCTPCREGT W Sbjct: 336 SEKCLMDYDSLKDNGTSLGTGAVIVMDNTTDMIAAIARFSKFYKHESCGQCTPCREGTSW 395 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ Sbjct: 396 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 455 Query: 418 QYH 420 Q+H Sbjct: 456 QFH 458 >gi|266651|sp|P29913|NQO1_PARDE RecName: Full=NADH-quinone oxidoreductase chain 1; AltName: Full=NADH dehydrogenase I, chain 1; AltName: Full=NDH-1, chain 1 gi|150598|gb|AAA25585.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 431 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 306/418 (73%), Positives = 354/418 (84%), Gaps = 1/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL+ + RGHWD I+++GRD II+E+KASGLRGRGGAGF Sbjct: 1 MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH Sbjct: 61 PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFIRERE+LQAA+DECY +GLLG N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ++GHVN PC VEE+MSI ELIEKH GGIRGGW NL AVIPGG+S P L A Q Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMDYDG++++ S GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM Sbjct: 301 NAIMDYDGMRDVRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVMERLV+G A+ EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR IE+RI Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIK 418 >gi|242001646|ref|XP_002435466.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative [Ixodes scapularis] gi|215498802|gb|EEC08296.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative [Ixodes scapularis] Length = 477 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 271/420 (64%), Positives = 328/420 (78%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIF NLYG L +MSRG W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 48 LSDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIIDEIKKSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A A+GA A Sbjct: 108 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLVAGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +G LG N+ GYD D+ VH GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNEASNLQIAIREAYQAGYLGKNACGSGYDFDVFVHRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG W++ FGR N GTK Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGEWFASFGRTRNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLL VIPGGSS P +P Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDD 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ TD+I+AI RL FYKHESCGQCTPCREG GW+ + Sbjct: 348 VLMDFDALVAAQTGLGTAAVIVMNKQTDMIRAIARLLEFYKHESCGQCTPCREGVGWLHK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G A+ EID++YE+SK IEG TICALGD AAWP+QGL+++FRPL+EERI Q+ Sbjct: 408 MMGRFVSGNARVDEIDMVYELSKQIEGHTICALGDGAAWPVQGLVRHFRPLMEERIRQFQ 467 >gi|46202357|ref|ZP_00208485.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 427 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 295/421 (70%), Positives = 335/421 (79%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTNLYG L + SRG WDN IL+KGRDWII E+K SGLRGRGGAGF Sbjct: 1 MLRDSDRIFTNLYGFHDWRLKGAQSRGDWDNTKAILDKGRDWIIEEMKNSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IA FAIGAH Sbjct: 61 PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIACFAIGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF+ E E L A+ E A+GLLG N+ G+D ++ VH GAGAYICGEE+AL+ Sbjct: 121 AYIYIRGEFVLEAEHLNTAIAEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I +LIEKH GG+RGGWDNLLA+IPGGSSVP L Q Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKDLIEKHAGGVRGGWDNLLAIIPGGSSVPMLNKQQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ M SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 EVTMDFDALRAMRSGLGTAAVIVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M R+V G A+ EIDLL EVS+ IEG TICALGDAAAWPIQGLI+ FRP +E RI + Sbjct: 361 RMMGRMVTGDAELSEIDLLEEVSRQIEGHTICALGDAAAWPIQGLIRTFRPEMERRIKER 420 Query: 420 H 420 Sbjct: 421 Q 421 >gi|209885057|ref|YP_002288914.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha carboxidovorans OM5] gi|209873253|gb|ACI93049.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha carboxidovorans OM5] Length = 441 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 301/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYGL L+ + RG WD I+EKGRDWI++E+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFKNLYGLDDWGLAGARRRGAWDGTKSIIEKGRDWIVSEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 A+IYVRGEFIRERE LQAAVD+ Y + L+G ++ G+ D+ V HGAGAYICGEETALL Sbjct: 121 AAYIYVRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VE+++ ITF ELI+KH GG+RGGWDNLLAVIPGG+S P +PA + Sbjct: 241 KLFGISGHVNTPCVVEDALGITFRELIDKHAGGVRGGWDNLLAVIPGGASCPLIPAADCQ 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S LGTA IVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 DLIMDFDGTRAVKSSLGTAGAIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 TR 422 >gi|170578164|ref|XP_001894295.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Brugia malayi] gi|158599191|gb|EDP36876.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative [Brugia malayi] Length = 481 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 268/423 (63%), Positives = 321/423 (75%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M G W ++L KG+DWII E+ ASG+RGRGGAGF Sbjct: 46 LKDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM + RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA A Sbjct: 106 TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A+ E Y +G +G NS GY D+ VH GAGAYICGEETAL+E Sbjct: 166 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFVHRGAGAYICGEETALIE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA P I +RGA WYS FGRE N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAKWYSSFGRERNHGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV PCTVEE MSI ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P Sbjct: 286 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 345 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L + +GLGTAAVIVM++ DI+K I RLS FY+HESCGQCTPCREGT W+ Sbjct: 346 VLMDYDALVAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 405 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R VKG A+ EID L+E+SK IE TICALGDAAAWP+QGLI++FRP IE RI +Y Sbjct: 406 VMWRFVKGQAKSSEIDSLWEISKQIEAHTICALGDAAAWPVQGLIRHFRPEIEHRISEYQ 465 Query: 421 RCN 423 N Sbjct: 466 AKN 468 >gi|167523547|ref|XP_001746110.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775381|gb|EDQ89005.1| predicted protein [Monosiga brevicollis MX1] Length = 463 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 274/421 (65%), Positives = 326/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L ++ RG W I+E G D+I++EVK SGLRGRGGAGF Sbjct: 31 LADDDRVFQNLYGRHDWGLKGALKRGTWYKTKNIVEAGSDFILDEVKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A A+GA A Sbjct: 91 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLLEGCLVAGRAMGAQAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF +E +LQ A++E Y GL+G N+ GYD DI + GAGAYICGEETAL+E Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDKGLIGKNACGSGYDFDIFLFRGAGAYICGEETALIE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG W++ FGRE N GTK Sbjct: 211 SIEGKTGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGDWFASFGRERNSGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PC VEE MSI+ EL+EKHCGG+ GGWDNLL VIPGGSSVP LP Sbjct: 271 LFAISGNVNKPCVVEEEMSISLRELLEKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVMD+S DII I RLS FY HESCGQCTPCREGT W+ + Sbjct: 331 VMMDFDALVAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLSK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+ Sbjct: 391 VMRRFVSGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450 Query: 421 R 421 + Sbjct: 451 Q 451 >gi|294677060|ref|YP_003577675.1| NADH-quinone oxidoreductase subunit F [Rhodobacter capsulatus SB 1003] gi|7387959|sp|O07948|NUOF_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|1938240|emb|CAA71232.1| complex I 51kDa subunit [Rhodobacter capsulatus] gi|2182080|emb|CAA71013.1| NADH:ubiquinone oxidoreductase 47 kD complex I subunit [Rhodobacter capsulatus] gi|3282565|gb|AAC24991.1| NUOF [Rhodobacter capsulatus] gi|294475880|gb|ADE85268.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter capsulatus SB 1003] Length = 431 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 295/421 (70%), Positives = 346/421 (82%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIFTN+YG+ +SL +M+RGHWD IL GRDWII +VKASGLRGRGGAGF Sbjct: 1 MLNDHDRIFTNIYGMHDRSLKGAMARGHWDGTAAILGNGRDWIIEQVKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP +LV+NADESEPGTCKDR+IMRH+PHTLIEG +IA FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE++RE+E+LQAA+DECY +GL+G N+ + YD D+ +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAVVPTILRRG +W++G GR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPNNTGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC VEE+MSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Sbjct: 241 KLFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPVIPAHLCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 AIMDYDG++E S GTA +IVMD+ TDIIKAI RLS F+KHESCGQCTPCREGT WM Sbjct: 301 DAIMDYDGMREKQSSFGTACLIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGTSWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMERLV G A+ EID+L+ V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMERLVTGEAEVEEIDMLFSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAR 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|258542717|ref|YP_003188150.1| NADH dehydrogenase I subunit F [Acetobacter pasteurianus IFO 3283-01] gi|256633795|dbj|BAH99770.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-01] gi|256636854|dbj|BAI02823.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-03] gi|256639907|dbj|BAI05869.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-07] gi|256642963|dbj|BAI08918.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-22] gi|256646018|dbj|BAI11966.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-26] gi|256649071|dbj|BAI15012.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-32] gi|256652058|dbj|BAI17992.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655115|dbj|BAI21042.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO 3283-12] Length = 442 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 290/421 (68%), Positives = 336/421 (79%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L + RG W+N I+ KGRD ++ E+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNLYGQDDWRLPAARKRGDWENTAAIIAKGRDAVVAEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR++MRHEPH LIE +IASFA+GAH Sbjct: 61 PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF RE E LQAA+DE Y +GLLG N+ G+D D +H GAGAYICGEETALL Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGSGWDFDFRIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA GLYGCPTTVNNVESIAV TI+RRGA+W+SG GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + E+IEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M R+V+G A+ EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY Sbjct: 361 RMMNRMVQGTAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|296444799|ref|ZP_06886762.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium OB3b] gi|296257747|gb|EFH04811.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium OB3b] Length = 434 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 305/424 (71%), Positives = 350/424 (82%), Gaps = 1/424 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG + L+ + RG WDN +L GRD II EVK SGLRGRGGAGF Sbjct: 1 MLADKDRIFTNLYGYGDRGLAGARKRGQWDNTKALLALGRDKIIQEVKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK YLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH Sbjct: 61 STGLKWSFMPKTPDPARPSYLVINADESEPGTCKDREIMRNDPHTLVEGAMVASFAMGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFI ER +LQ AVDE YA+ L+G ++ GY D+ VHHGAGAYICGEETAL+ Sbjct: 121 ACYIYVRGEFIAERVALQRAVDEAYAARLIGKDNVHGYPFDLYVHHGAGAYICGEETALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWFAGIGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLFSISGHVN PC VEE+MSI F ELI++HCGG+RGG DNLLAVIPGGSSV +PA Q+ Sbjct: 241 KLFSISGHVNKPCNVEEAMSIPFRELIDRHCGGVRGGSDNLLAVIPGGSSVRLVPADQII 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+ +G A KREID+L++VSK IEG TICALGDAAAWPIQGLI +FR IE RID+Y Sbjct: 361 RVVTRMAEGRAHKREIDMLFDVSKQIEGHTICALGDAAAWPIQGLINHFRGEIERRIDRY 420 Query: 420 HRCN 423 Sbjct: 421 AANP 424 >gi|115647097|ref|XP_001178525.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 1 [Strongylocentrotus purpuratus] gi|115924266|ref|XP_001178444.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 2 [Strongylocentrotus purpuratus] Length = 471 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 268/421 (63%), Positives = 327/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M+RG W +IL KG DWI+ E++ SGLRGRGGAGF Sbjct: 42 LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETA++E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PCTVEESMSI LIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ D+I+ I RL FY+HESCGQCTPCREGTGWM + Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + R V+G A+ EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461 Query: 421 R 421 Sbjct: 462 E 462 >gi|148259937|ref|YP_001234064.1| NADH dehydrogenase I subunit F [Acidiphilium cryptum JF-5] gi|326403109|ref|YP_004283190.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] gi|146401618|gb|ABQ30145.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5] gi|325049970|dbj|BAJ80308.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] Length = 431 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 285/421 (67%), Positives = 339/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+D+DRI+TNLYGL L+ + +RG WD IL +GRD II E+K+SGLRGRGGAGF Sbjct: 1 MLSDRDRIYTNLYGLHDWRLAGARARGDWDGTKDILARGRDAIIEEIKSSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RP YLV+NADESEPGTCKDRDI+RHEPH L+EG +IA FA+GAH Sbjct: 61 PTGMKWSFMPKETDGRPSYLVINADESEPGTCKDRDILRHEPHKLVEGALIAGFAMGAHR 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 AFIYVRGE+ E ++LQAAVDE +GLLG ++ G+ DI VH GAGAYICGEE+AL+ Sbjct: 121 AFIYVRGEYYNEYKNLQAAVDEAREAGLLGDDACGSGWAFDITVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA +GLYGCPTTVNNVE+IA V TI+RRGA+W+S GR N GT Sbjct: 181 ESIEGKKGLPRMKPPFPAALGLYGCPTTVNNVETIAGVATIMRRGAAWFSALGRPKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEKH GG+RGGWDNL AVIPGGSSV +P Sbjct: 241 KIFCISGHVNRPCNVEEELGIPLRELIEKHAGGVRGGWDNLQAVIPGGSSVHMIPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+E +GLGTAAVIVMD+STD+I+AI RL+ FYKHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLREQRTGLGTAAVIVMDKSTDLIRAIARLAAFYKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M RLV+G A+ +IDLL +V+K +EG TIC LGDAAAWPIQGL+++FRP++E+RI Y Sbjct: 361 RMMYRLVEGRAEIADIDLLEQVTKQVEGHTICPLGDAAAWPIQGLLRHFRPVVEQRIADY 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|146278038|ref|YP_001168197.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17025] gi|145556279|gb|ABP70892.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides ATCC 17025] Length = 431 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 292/421 (69%), Positives = 347/421 (82%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ +SL +M+RG WD +L GRD II+ VK SGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNLYGMGDRSLKGAMARGQWDGTADLLALGRDRIIDIVKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +++ FA+GA Sbjct: 61 PTGLKWSFMPKQSDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALLSGFAMGAVA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDAGLIGRNAAKSGYDFDIYLHHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV+P ILRRG W++GFGR NN G Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFAGFGRPNNAGV 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF++SGHVN PC +EESMSI+ ELIEKH GG+RGGW NL AVIPGG+S P +PA Q Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYDG++E+ S GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+RLV+G A+ EID+L V+K +EG TICALGDAAAWPIQGLI+++R IE+RI Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAK 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|72087543|ref|XP_791098.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 2 [Strongylocentrotus purpuratus] gi|115924268|ref|XP_001178353.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) isoform 1 [Strongylocentrotus purpuratus] Length = 471 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 268/421 (63%), Positives = 327/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M+RG W +IL KG DWI+ E++ SGLRGRGGAGF Sbjct: 42 LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETA++E Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG+VN PCTVEESMSI LIEKH GG+ GGWDNLLAVIPGGSS P +P Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAAVIVM++ D+I+ I RL FY+HESCGQCTPCREGTGWM + Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + R V+G A+ EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461 Query: 421 R 421 Sbjct: 462 E 462 >gi|34328784|gb|AAQ63696.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlamydomonas reinhardtii] Length = 484 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 283/417 (67%), Positives = 337/417 (80%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF N+YG S+ +MSRG W +I+ KGRDWII+++K SGLRGRGGAGF Sbjct: 56 LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A A+GA Sbjct: 116 SGLKWSFMPKASDSRPIYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF++ER +++ A+ E YA G LG N+ G D D++VH+GAGAYICGEETAL+E Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN P TVEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP LP G Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR +EERI Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERIK 472 >gi|296808193|ref|XP_002844435.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS 113480] gi|238843918|gb|EEQ33580.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS 113480] Length = 534 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 273/421 (64%), Positives = 329/421 (78%), Gaps = 4/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWII+EVK SGLRGRGGAGF Sbjct: 84 LKDQDRIFQNLYGRHPPDLKHAMKSGDWYKTKEIILKGHDWIISEVKTSGLRGRGGAGFP 143 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+ A+ A Sbjct: 144 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 203 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 204 TAAYIYIRGEFYEEATVLQQAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 263 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+ Sbjct: 264 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 323 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 324 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 383 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 384 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 443 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 444 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 503 Query: 418 Q 418 Q Sbjct: 504 Q 504 >gi|300023448|ref|YP_003756059.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525269|gb|ADJ23738.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 428 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 299/420 (71%), Positives = 349/420 (83%), Gaps = 1/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYG L ++SRG WD ++KG D+II+EVK SGLRGRGGAGF Sbjct: 1 MLHDRDRIFRNLYGFHDARLKGAISRGAWDGTKFFIDKGHDYIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLV+NADESEPG+CKDR+IMRH+PH LIEG ++A+FA+ AH Sbjct: 61 PTGLKWSFMPKAD-HRPSYLVINADESEPGSCKDREIMRHDPHLLIEGALLAAFAMRAHT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++IYVRGE+IRERE+LQ A+DE YA+ L+G N+ G+D D+ VHHGAGAYICGEETA+LE Sbjct: 120 SYIYVRGEYIREREALQRAIDEAYAAKLIGKNNVHGWDFDLYVHHGAGAYICGEETAMLE 179 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGKKGQPRLKPPFPANVGLYG PTT+NNVESIAV ILRRGA+W++ G NN GTK Sbjct: 180 SIEGKKGQPRLKPPFPANVGLYGAPTTINNVESIAVTGEILRRGANWFAALGLPNNTGTK 239 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE M I ELI+KHCGGIRGGWDNLLAVIPGGSSV C+ A Q Sbjct: 240 LFQISGHVERPCTVEEEMGIPLKELIDKHCGGIRGGWDNLLAVIPGGSSVRCITAEQAMN 299 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L ++GSGLGTAA+IVMD+STDII AI R++ FYKHESCGQCTPCREGTGWM R Sbjct: 300 VTMDFDALGKLGSGLGTAAIIVMDKSTDIIGAIRRIAYFYKHESCGQCTPCREGTGWMWR 359 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+ +G A+KREIDLL++V+K IEG TICALGDAAAWP+QGLIKNFRP+IEERIDQY Sbjct: 360 VLERMERGQAEKREIDLLFDVTKQIEGHTICALGDAAAWPVQGLIKNFRPVIEERIDQYQ 419 >gi|16126190|ref|NP_420754.1| NADH dehydrogenase I subunit F [Caulobacter crescentus CB15] gi|221234961|ref|YP_002517397.1| NADH dehydrogenase I subunit F [Caulobacter crescentus NA1000] gi|13423406|gb|AAK23922.1| NADH dehydrogenase I, F subunit [Caulobacter crescentus CB15] gi|220964133|gb|ACL95489.1| NADH-quinone oxidoreductase chain F [Caulobacter crescentus NA1000] Length = 439 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 294/421 (69%), Positives = 339/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGL L + RG W+ IL+ GRDWII +K SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGLHDWGLEGAKKRGCWNGTKDILDAGRDWIIENMKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH Sbjct: 64 STGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++ ERE L+AA+ + Y + L+G N+ G+D DI VHHGAGAYICGEETALL Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGAGAYICGEETALL 183 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYG PTTVNNVESIAV TILRRGA+W++GFGR NN GT Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLVEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 304 DLPMDFDALRNLKSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+V G A +EID L +V+ +EG TICALGDAAAWPIQGL ++FR +EERI Y Sbjct: 364 RVMERMVTGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423 Query: 420 H 420 Sbjct: 424 R 424 >gi|302658280|ref|XP_003020846.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517] gi|291184712|gb|EFE40228.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517] Length = 595 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 145 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 204 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A Sbjct: 205 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 265 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+ Sbjct: 325 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 385 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 444 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 445 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 504 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 505 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEGRIR 564 Query: 418 QYHRCN 423 Q + N Sbjct: 565 QNAQAN 570 >gi|258567288|ref|XP_002584388.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii 1704] gi|237905834|gb|EEP80235.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii 1704] Length = 532 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 270/422 (63%), Positives = 331/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF NLYG G L ++M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 82 LKDRDRIFQNLYGRHGPDLKNAMKTGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 141 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 142 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 201 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEET+ Sbjct: 202 TAAYIYIRGEFYEEATVLQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 261 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 262 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 321 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 322 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 381 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 382 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 441 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG +ICALG+A AWPIQGLI++FRP +E RI Sbjct: 442 TMQIMQRFERGQAREREIDMLQELTKQVEGHSICALGEAFAWPIQGLIRHFRPELEARIQ 501 Query: 418 QY 419 ++ Sbjct: 502 KF 503 >gi|170112662|ref|XP_001887532.1| predicted protein [Laccaria bicolor S238N-H82] gi|164637434|gb|EDR01719.1| predicted protein [Laccaria bicolor S238N-H82] Length = 501 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN Y + ++SRG W I+ KG WII ++K SGLRGRGGAGF Sbjct: 41 LKDQDRIFTNAYCRHDHGIKGALSRGDWHRTKDIILKGDAWIIQQIKDSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A ++ A Sbjct: 101 SGLKWSFMNKPGWQNDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRSMNA 160 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF +E +Q A+ E Y +GLLG N+ GY D+ VH GAGAYICGEETA Sbjct: 161 TAAYIYIRGEFYQEASHVQQAIHEAYTAGLLGPNACGSGYAFDVYVHRGAGAYICGEETA 220 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRGASW++GFGRE N+ Sbjct: 221 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGASWFAGFGRERNQ 280 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PC VEE MSI +LIEKHCGG+ GGWDNLL ++PGGSSVP +P Sbjct: 281 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVVGGWDNLLGIVPGGSSVPVIPKDV 340 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK+ +GLGT AVIVM++STDI+ AI R S FYKHESCGQCTPCREGT W Sbjct: 341 CAEVLMDYDSLKDAQTGLGTGAVIVMNKSTDIVAAIARFSQFYKHESCGQCTPCREGTTW 400 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM +M R+V+G REID+L E++K +EGRTICALGDAAAWPIQGL+++FRP +E RI Sbjct: 401 MMNMMNRMVEGRGHLREIDMLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVERRIQ 460 Query: 418 QYHRCN 423 ++ N Sbjct: 461 EFRAVN 466 >gi|312221816|emb|CBY01756.1| similar to NADH-ubiquinone oxidoreductase 51 kDa subunit [Leptosphaeria maculans] Length = 508 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 265/422 (62%), Positives = 324/422 (76%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +IL KG DWII+E+K SGLRGRGGAGF Sbjct: 59 LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKTSGLRGRGGAGFP 118 Query: 62 TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 119 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 178 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E L+ A+ E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 179 TAAYIYIRGEFYHEAAVLERAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 238 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++ FGRE N+ Sbjct: 239 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFASFGRERNQ 298 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL++ISGHVN PC VEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 299 GTKLYAISGHVNKPCVVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 358 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W Sbjct: 359 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 418 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Sbjct: 419 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 478 Query: 418 QY 419 Y Sbjct: 479 DY 480 >gi|289615344|emb|CBI57930.1| unnamed protein product [Sordaria macrospora] Length = 493 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 271/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII EVKASGLRGRGGAGF Sbjct: 44 LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 104 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 163 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQ A++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 164 TAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 223 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++ FGRE N+ Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFASFGRERNQ 283 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 284 GTKLYCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 344 CDDQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 463 Query: 418 QYHRCN 423 ++ + N Sbjct: 464 KFAQEN 469 >gi|261199832|ref|XP_002626317.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081] gi|239594525|gb|EEQ77106.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081] gi|239607916|gb|EEQ84903.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ER-3] gi|327357999|gb|EGE86856.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ATCC 18188] Length = 518 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 272/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 68 LKDQDRIFQNLYGNHGADLKTAMKFGDWYKTKEIMLKGHDWIISEIKASGLRGRGGAGFP 127 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 128 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 187 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E S+Q A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 188 TAAYIYIRGEFYNEATSVQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 247 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 248 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGKWFASFGRERNQ 307 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 308 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 367 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 368 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 427 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 428 TYQMMKRFESGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 487 Query: 418 QYHR 421 +Y + Sbjct: 488 KYEQ 491 >gi|114569910|ref|YP_756590.1| NADH dehydrogenase I subunit F [Maricaulis maris MCS10] gi|114340372|gb|ABI65652.1| NADH dehydrogenase subunit F [Maricaulis maris MCS10] Length = 437 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 280/420 (66%), Positives = 334/420 (79%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNL+G L + RG W+ +IL++GRDWII +KASGLRGRGGAGF Sbjct: 5 LLQDKDRIFTNLFGHHSPDLEGAKQRGCWNGTTEILQQGRDWIIENMKASGLRGRGGAGF 64 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASF++ AH Sbjct: 65 PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFSMQAHA 124 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +++ AV E Y + L+G ++ G+ + +HHGAGAYICGEETALLE Sbjct: 125 CYIYLRGEYVTERLAMEKAVKEAYEAKLIGDDNIHGWPFHVYIHHGAGAYICGEETALLE 184 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV TILRRGA W++ FGRE N GTK Sbjct: 185 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAGTILRRGAEWFASFGRERNVGTK 244 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FSISGHVN PC VEE+MSI LIE H GG+RGGWDNL AVIPGGSSV LP Sbjct: 245 IFSISGHVNNPCNVEEAMSIPMKTLIETHAGGVRGGWDNLKAVIPGGSSVSLLPKDICDD 304 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L SGLGTAAVIVMD+STD++KAI R+S FY+HESCGQCTPCREGTGWM R Sbjct: 305 VLMDFDALSAHKSGLGTAAVIVMDKSTDVVKAIARISYFYRHESCGQCTPCREGTGWMWR 364 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ +G + EID+L +V+ +EG TICALGDAAAWP+QGLI++FR IE+RI+ Y Sbjct: 365 VLTRMSRGESTIEEIDMLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRSEIEDRINNYR 424 >gi|90423909|ref|YP_532279.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB18] gi|90105923|gb|ABD87960.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris BisB18] Length = 441 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 300/422 (71%), Positives = 342/422 (81%), Gaps = 1/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLYG L + RG WD I+EKGRDWIINE+K SGLRGRGGAGF Sbjct: 1 MLDDKDRIFRNLYGQGDWGLEGARRRGSWDGTKAIIEKGRDWIINEMKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSFMPK +D YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GA Sbjct: 61 PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHVLVEGCLLASFAMGAK 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGEFIRERE LQAAVD+ Y + L+G ++ G+ ++ V HGAGAYICGEETALL Sbjct: 121 VCYIYVRGEFIREREHLQAAVDQAYEAKLIGQDNIHGWPFELYVTHGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S GR NN GT Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA Sbjct: 241 KLFGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCG 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID + Sbjct: 361 RVLSRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420 Query: 420 HR 421 R Sbjct: 421 SR 422 >gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 597 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 171/426 (40%), Positives = 253/426 (59%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 Q R+ N + +S+ + ++R + + K+L K + +I+ +KASGLRGRGGA Sbjct: 111 FFKRQTRVTLRNTGLINPESIEEYIARDGYQALGKVLSKYSPEEVISAIKASGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + S P Y+V NADE +PG DR I+ +PH+++E I +AIGA Sbjct: 171 GFPTGLKWEFTARA-SGNPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAICGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ + L+ A+ +C GLLG N G++ DI + GAGA++CGEETA Sbjct: 230 EKGFIYVRAEYPLAVQRLETAIGKCLEYGLLGRNIFSTGFNFDIEIRVGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR KPPFPA GL+G PT +NNVE+ A +P I+ G W+S G EN++ Sbjct: 290 LLASIEGRRGEPRPKPPFPAQEGLWGKPTVINNVETWANIPPIILNGPEWFSAIGTENSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M E+I GGI AV GG S C+PA Sbjct: 350 GTKVFALAGKINNTGLVEVPMGTPLKEIIYDIGGGIP-NGKKFKAVQTGGPSGGCIPAEY 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L ++G+ +G+ +I++D T ++ F + ESCG+C PCR GT Sbjct: 409 L-DTPVDYDSLVKLGTIMGSGGMIIVDEDTCMVDLAKFFLEFVQEESCGKCAPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +MER+V+G + +I+LL E+S+ I+ +C LG A P+ +++FR I Sbjct: 468 MLEIMERIVEGNGKDGDIELLEELSQGIKSSALCGLGQTAPNPVLSTLRHFREEYIAHIK 527 Query: 418 QYHRCN 423 RC Sbjct: 528 D-KRCP 532 >gi|315042968|ref|XP_003170860.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] gi|311344649|gb|EFR03852.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] Length = 535 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 274/426 (64%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWIINEVK SGLRGRGGAGF Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIINEVKTSGLRGRGGAGFP 144 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+ A+ A Sbjct: 145 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 204 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV P I RRG W++GFGRE N+ Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPAICRRGGKWFAGFGRERNQ 324 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 384 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504 Query: 418 QYHRCN 423 Q + N Sbjct: 505 QNAQAN 510 >gi|322698851|gb|EFY90618.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium acridum CQMa 102] Length = 486 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 268/426 (62%), Positives = 331/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG +L + G W +I+ KG DWIINE+KASGLRGRGGAGF Sbjct: 37 LKDQDRIFQNLYGRLPPNLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 97 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E Y GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R +G ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QYHRCN 423 ++ + N Sbjct: 457 KFAQEN 462 >gi|171682190|ref|XP_001906038.1| hypothetical protein [Podospora anserina S mat+] gi|170941054|emb|CAP66704.1| unnamed protein product [Podospora anserina S mat+] Length = 497 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 272/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII E+KASGLRGRGGAGF Sbjct: 48 LRDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEILLKGHDWIIGEIKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 108 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 167 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI E LQ A++E YA GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 168 SAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYVHRGGGAYVCGEETS 227 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 228 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 287 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 288 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHV 347 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 408 TEQIMQRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 467 Query: 418 QYHRCN 423 ++ + N Sbjct: 468 KFAQEN 473 >gi|298711911|emb|CBJ48598.1| NUOF homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus siliculosus] Length = 511 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 271/416 (65%), Positives = 331/416 (79%), Gaps = 1/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG Q + D++ RG W +I+ G DWI+ E+K SGLRGRGGAGF Sbjct: 54 LKDQDRIFTNLYGEQDWRVGDALKRGDWHQTKEIMWMGPDWIVQEMKDSGLRGRGGAGFP 113 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A +A+ A A Sbjct: 114 SGLKWSFMPKNTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAA 173 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E + A+ E Y G LG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 174 YIYIRGEYFNEAVVMDEAIHEAYQKGFLGKNACGSGYDFDVYLHRGAGAYICGEETALIE 233 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G+PRLKPPFPANVG++GCPTTV NVE++AV PTILRRGASW++ FGR+NN GTK Sbjct: 234 SLEGRQGKPRLKPPFPANVGVFGCPTTVTNVETVAVAPTILRRGASWFASFGRKNNHGTK 293 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN P VEE MSIT EL++KHCGG+RGGWDNL AVIPGGSSVP L Sbjct: 294 LFAISGHVNNPIVVEEEMSITLRELLDKHCGGVRGGWDNLQAVIPGGSSVPVLDINDCAD 353 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ GSGLGTAAV VMD+S D+I AI RL+ FYKHESCGQCTPCREGTGW+ + Sbjct: 354 VMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCREGTGWLEQ 413 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++ KG A REI +L E+S++IEG TICALGDAAAWP+QGLI+ F+P+IEERI Sbjct: 414 MLVKMEKGEADTREIPMLEEISRSIEGHTICALGDAAAWPVQGLIRRFQPVIEERI 469 >gi|330914723|ref|XP_003296758.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1] gi|311330967|gb|EFQ95153.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1] Length = 506 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 266/422 (63%), Positives = 325/422 (77%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L + G W +IL KG +WII+E+KASGLRGRGGAGF Sbjct: 57 LKDQDRIFQNLYGHHGADLKSAQKYGDWHKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 117 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 176 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 177 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 236 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+ Sbjct: 237 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 296 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL++ISGHVN PC VEE MSI +LIEKHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 297 GTKLYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 356 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W Sbjct: 357 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 416 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Sbjct: 417 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 476 Query: 418 QY 419 Y Sbjct: 477 DY 478 >gi|125601292|gb|EAZ40868.1| hypothetical protein OsJ_25349 [Oryza sativa Japonica Group] Length = 514 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 86 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 145 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 146 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 205 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 206 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 265 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 266 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 325 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 326 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 385 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 386 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 445 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 446 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 493 >gi|157803300|ref|YP_001491849.1| NADH dehydrogenase I subunit F [Rickettsia canadensis str. McKiel] gi|166918574|sp|A8EXI1|NUOF_RICCK RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|157784563|gb|ABV73064.1| NADH dehydrogenase I chain F [Rickettsia canadensis str. McKiel] Length = 420 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 288/419 (68%), Positives = 334/419 (79%), Gaps = 2/419 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IF NL+G Q L S RG WDN +L+KGRD+II EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFIIEEVKQSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHCGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA+ GLYGCPTT+NNVESIAVVPTILRRGA+W++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVPTILRRGANWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE M I ELIEK+ GG++GGW+NL A+IPGGSSVP +P Sbjct: 240 KVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGGWNNLKAIIPGGSSVPLIPKSICE 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVM++STDI+ AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TVDMDFDSLRTAGSGLGTGGIIVMNQSTDIVYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IEERI Sbjct: 360 RVMMRLVKGNAKKSEIDQLLSVTKAIEGHTICALGDAAAWPIQGLIRHFRDEIEERICH 418 >gi|329889336|ref|ZP_08267679.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC 11568] gi|328844637|gb|EGF94201.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC 11568] Length = 437 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 285/426 (66%), Positives = 336/426 (78%), Gaps = 2/426 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYG L + RG W+ +L+ GRDWII VK SGLRGRGGAGF Sbjct: 4 ILQDKDRIFTNLYGFHDWGLEGAKKRGAWNATKDMLDLGRDWIIANVKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK DRPHYLV+NADESEP TCKDR+IMRH+P LIEG +IASFA+ AH Sbjct: 64 STGLKWSFMPKEVKDRPHYLVINADESEPATCKDREIMRHDPQLLIEGALIASFAMQAHA 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+I ERE ++AAV + Y + L+G ++ G+D + +HHGAGAYICGEETALLE Sbjct: 124 CYIYLRGEYILERERMEAAVKQAYEAKLIGDDNVHGWDFHVYIHHGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGADWFAGFGRPNNTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L S+SGHVN PC VEE+MSI +LIE H GG+RGGW+NL A+IPGG+S P + Q Sbjct: 244 LMSLSGHVNTPCVVEEAMSIPLRQLIEDHGGGVRGGWENLKAIIPGGASCPVITREQAEV 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D ++EM S LGTA V VMD+STDI+KAI R+S F+KHESCGQCTPCREGTGWM R Sbjct: 304 ALMDFDSMREMRSSLGTAGVTVMDQSTDIVKAIARISYFFKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419 V+ER+ G A EIDLL +V+ +EG TICALGDAAAWP+QGLI++FR IEERI Y Sbjct: 364 VLERMAIGDADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIHTYR 423 Query: 420 -HRCNF 424 R NF Sbjct: 424 SRRANF 429 >gi|94496476|ref|ZP_01303053.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58] gi|94424222|gb|EAT09246.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58] Length = 445 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 295/419 (70%), Positives = 340/419 (81%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG Q + +M RG WDN +LE G+D IIN +KASGLRGRGGAGF Sbjct: 17 LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTKALLEIGQDEIINRIKASGLRGRGGAGFP 76 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK D +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A Sbjct: 77 TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGFAMRARA 136 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEFI E + L AAV++ YA G LG N+ GYD D+ VH GAGAYICGEETA + Sbjct: 137 AYIYIRGEFIYEAKVLFAAVEQAYAKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 196 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYGCPTTVNNVESIAV PTILRR W++ GR NN GT Sbjct: 197 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRSPEWFASIGRPNNLGT 256 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE+M I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ Sbjct: 257 KLFQISGHVNKPCVVEEAMGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 316 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 317 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 376 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RVMERL G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + Sbjct: 377 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 435 >gi|302498901|ref|XP_003011447.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371] gi|291174998|gb|EFE30807.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371] Length = 535 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 144 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A Sbjct: 145 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 204 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+ Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 324 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 384 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504 Query: 418 QYHRCN 423 Q + N Sbjct: 505 QNAQAN 510 >gi|302833609|ref|XP_002948368.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f. nagariensis] gi|300266588|gb|EFJ50775.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f. nagariensis] Length = 489 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 283/420 (67%), Positives = 334/420 (79%), Gaps = 3/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+YG S+ +MSRG W +++ KGRDWII+++K SGLRGRGGAGF Sbjct: 59 LKDDDRIFQNIYGRHDTSIKGAMSRGDWYMTKELVLKGRDWIIDQMKKSGLRGRGGAGFP 118 Query: 62 TGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 +G+KWSFMPK RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA A+GA Sbjct: 119 SGLKWSFMPKAMASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVAMGAR 178 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+RGEF+ ER S+ A+DE YA G LG N+ G D D++VH+GAGAYICGEETAL Sbjct: 179 AGYIYIRGEFVNERRSVMRAIDEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETAL 238 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG W+S FGR+NN G Sbjct: 239 IESLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAG 298 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TKLF ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP L Sbjct: 299 TKLFCISGHVNRPCTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLTKKLC 358 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +MD+D LKE SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 359 DTVLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWL 418 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR +E+RI Sbjct: 419 YDIMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRIKN 478 >gi|219885535|gb|ACL53142.1| unknown [Zea mays] Length = 504 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 279/408 (68%), Positives = 327/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L ++ RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMR +PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRQDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|242769552|ref|XP_002341788.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces stipitatus ATCC 10500] gi|218724984|gb|EED24401.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces stipitatus ATCC 10500] Length = 497 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 270/424 (63%), Positives = 333/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W +++ KG DW+I+E+KASGLRGRGGAGF Sbjct: 48 LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 108 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 167 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 168 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGTGYDFDVYLHRGAGAYVCGEETS 227 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+ Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 287 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCT+EE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 288 GTKLFCISGHVNNPCTIEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKKI 347 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 408 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 467 Query: 418 QYHR 421 +Y Sbjct: 468 KYEE 471 >gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 599 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 252/426 (59%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I T N+ + ++ + ++R + + K+L+ D ++ EVK SGLRGRGGA Sbjct: 111 FFARQVKIATRNVGYIDPMNIEEYIARDGYFALAKVLKHMSPDQVVEEVKKSGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K + Y++ NADE +PG DR ++ +PHT++E IA +AIGA Sbjct: 171 GFPTGLKWELTRKSKGE-KKYIICNADEGDPGAFMDRSVLEGDPHTILEAMAIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ E L AA+ + G LG N + DI + GAGA++CGEETA Sbjct: 230 NQGYIYVRAEYPLAIERLNAAISQAKEYGFLGENIMDSNFGFDIEIRIGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+GQPR+KPP+PA G++GCPT +NNVE++A +P I+ +GA W+ G E + Sbjct: 290 LIASIEGKRGQPRVKPPYPAQSGVWGCPTVINNVETLACIPPIIIKGADWFRSIGTEKSP 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M IT EL+ + GG + AV GG S C+P+ Sbjct: 350 GTKVFALAGKITNTGLVEVPMGITLKELLYEIGGG-SSTGKKIKAVQTGGPSGGCIPSDY 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L+++G+ +G+ +IVMD ++ F ESCG+CTPCREGT Sbjct: 409 -FDTPVDYESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVDESCGKCTPCREGTRQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+++++++ G +R+++ L ++ I+ ++C LG A P+ ++ +R E + Sbjct: 468 MLKILDKITSGEGTERDLEELERLANVIKDTSLCGLGQTAPNPVLSTLQYYRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|169606386|ref|XP_001796613.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15] gi|111064942|gb|EAT86062.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15] Length = 502 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 269/426 (63%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +IL KG DWII+E+KASGLRGRGGAGF Sbjct: 53 LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKASGLRGRGGAGFP 112 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A Sbjct: 113 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 172 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E L+ A+ E Y +G +G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 173 TAAYIYIRGEFYHEAAVLERAIQEAYKAGFIGKNACGSGYDFDVYVHRGMGAYVCGEETS 232 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+ Sbjct: 233 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 292 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF+ISGHVN+PCTVEE MSI ELI+KHCGG+ GGWDNL AVIPGGSS P LP Sbjct: 293 GTKLFAISGHVNHPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKAVIPGGSSTPILPKHV 352 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W Sbjct: 353 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 412 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Sbjct: 413 THQIMDRFNKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIQ 472 Query: 418 QYHRCN 423 Y N Sbjct: 473 GYAEKN 478 >gi|15242306|ref|NP_196470.1| CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH [Arabidopsis thaliana] gi|9759347|dbj|BAB10002.1| NADH dehydrogenase [Arabidopsis thaliana] gi|20260144|gb|AAM12970.1| NADH dehydrogenase [Arabidopsis thaliana] gi|30387597|gb|AAP31964.1| At5g08530 [Arabidopsis thaliana] gi|332003932|gb|AED91315.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Arabidopsis thaliana] Length = 486 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 280/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD ++ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|212542183|ref|XP_002151246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium marneffei ATCC 18224] gi|210066153|gb|EEA20246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium marneffei ATCC 18224] Length = 505 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 271/424 (63%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W ++ KG DW+I+E+KASGLRGRGGAGF Sbjct: 56 LKDQDRIFTNLYGHHGTDLKSAMKYGDWYKTKDMILKGHDWLISEIKASGLRGRGGAGFP 115 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 116 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 175 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 176 TAAYIYIRGEFYEEATTLQRAIHEAYQAGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 235 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRG SW++GFGRE N+ Sbjct: 236 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIMRRGGSWFAGFGRERNQ 295 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 296 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKSI 355 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 356 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 415 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 416 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 475 Query: 418 QYHR 421 QY + Sbjct: 476 QYEK 479 >gi|115473713|ref|NP_001060455.1| Os07g0645400 [Oryza sativa Japonica Group] gi|23307584|dbj|BAC16718.1| putative NADH dehydrogenase [Oryza sativa Japonica Group] gi|113611991|dbj|BAF22369.1| Os07g0645400 [Oryza sativa Japonica Group] Length = 504 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|321467624|gb|EFX78613.1| hypothetical protein DAPPUDRAFT_53209 [Daphnia pulex] Length = 437 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG LS +M RG W +IL KG DWI+NEVK SGLRGRGGAGF Sbjct: 8 LKDEDRIFTNLYGRHDWRLSGAMKRGDWYKTKEILLKGVDWILNEVKKSGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 68 SGMKWSFMNKPSDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 127 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y GL+G N+ + GYD D+ VH GAGAYICGEETAL+E Sbjct: 128 YIYIRGEFYNEGTNVQVAIHEAYKQGLIGKNACESGYDFDVFVHRGAGAYICGEETALIE 187 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG W+ GFGR N GTK Sbjct: 188 SIEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGFGRPRNSGTK 247 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H G+ GGWDNLLAVIPGGSS P +P Sbjct: 248 LFNISGHVNNPCTVEEEMSIPLRELIERHARGVVGGWDNLLAVIPGGSSTPMIPRKVCDD 307 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAA+IVM++ TD+I+AI RL FYKHESCGQCTPCREGTGWM + Sbjct: 308 VLMDFDALVAAQTGLGTAALIVMNKQTDVIRAIARLIEFYKHESCGQCTPCREGTGWMNK 367 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M R V+G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ ++ Sbjct: 368 IMYRFVEGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPEIEDRMKRF 426 >gi|225559879|gb|EEH08161.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] gi|225559929|gb|EEH08211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 512 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 62 LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481 Query: 418 QYHR 421 +Y + Sbjct: 482 KYEQ 485 >gi|148284884|ref|YP_001248974.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str. Boryong] gi|146740323|emb|CAM80727.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Boryong] Length = 422 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 2/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +D+IFTNL G L+ + RG W ++ R+WII E+K+SGLRGRGGAGF Sbjct: 1 MLNIEDKIFTNLSGAMAVDLASAKKRGDWYTTKNLILNSREWIIEEIKSSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S++ YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA Sbjct: 61 PTGLKWSFMPKN-SEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E LQ A+ E Y + L+G N+ ++ ++ +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYGARLIGLNACGTDFNFNLYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPAN GLYGCPTT+NNVESIAVVPTILRRGA W++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPANTGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FSISGHVN PC +EE+M + LIEK+ GG+RGGWDNL A+IPGGSSVP +P Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D LK +GSGLGT +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 300 TVEMDFDSLKAVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M RLV+G A +ID++ +V+K IEG TICALGDAAAWPIQGLIK+FR IE+RI + Sbjct: 360 RIMMRLVEGNASVSDIDMILDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419 Query: 420 H 420 + Sbjct: 420 N 420 >gi|73667105|ref|YP_303121.1| NADH dehydrogenase I subunit F [Ehrlichia canis str. Jake] gi|72394246|gb|AAZ68523.1| NADH dehydrogenase subunit F [Ehrlichia canis str. Jake] Length = 427 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 275/422 (65%), Positives = 326/422 (77%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DR+FTNLYG Q L + SRG W N+ +IL G D II EVK SGLRGRGGAGF Sbjct: 1 MLKDSDRVFTNLYGQQSPFLKSAKSRGVWSNILEILNLGPDHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK D +P YLVVNADESEPGTCKDRDI+R++PH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKDGQPAYLVVNADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A++Y+RGEF E L A+DE Y + L+G N+ GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYVYIRGEFYNEYLVLSKALDEAYKAKLIGKNACGSGYDLDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V I+RRG+ W++ G+ENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTVTMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+M+++VKG A IDLL ++ +EG TICALGDAAAWPIQGLI++FR +IE+RI Sbjct: 361 WRIMQKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRDVIEDRIKN 420 Query: 419 YH 420 Y+ Sbjct: 421 YN 422 >gi|225462161|ref|XP_002266661.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 487 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++GFGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 298 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ Sbjct: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|295689621|ref|YP_003593314.1| NADH-quinone oxidoreductase subunit F [Caulobacter segnis ATCC 21756] gi|295431524|gb|ADG10696.1| NADH-quinone oxidoreductase, F subunit [Caulobacter segnis ATCC 21756] Length = 439 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 293/421 (69%), Positives = 340/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGLQ L + RG W+ IL+ GRDWII+ +K SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ A+ Sbjct: 64 STGLKWSFMPKEVKEGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAN 123 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++ ERE L+AA+ + Y + L+G N+ G+D D+ VHHGAGAYICGEETALL Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYG PTTVNNVESIAV TILRRGA+W++GFGR NN GT Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ + SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKSTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+ G A +EID L +V+ +EG TICALGDAAAWPIQGL ++FR +EERI Y Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423 Query: 420 H 420 Sbjct: 424 R 424 >gi|46134221|ref|XP_389426.1| NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Gibberella zeae PH-1] Length = 486 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 272/426 (63%), Positives = 334/426 (78%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY L + G W +I+ KG DWII+EVKASGLRGRGGAGF Sbjct: 37 LRDQDRIFQNLYNRYPVDLKSARKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLV+NADE EPGTCKDR+IMR +PH LIEGC+I+ A+ A Sbjct: 97 SGLKWSFMNFKDWDKDNKPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E YA+GL+G N+ + GYD D+ +H GAGAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYAAGLIGKNACESGYDFDVYLHRGAGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGSWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 277 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKSV 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQMMKRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QYHRCN 423 ++ + N Sbjct: 457 KFAQEN 462 >gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] Length = 597 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + + + K+L + +I+ +K SGLRGRGGA Sbjct: 111 FYNRQRRIVLKNCGVIDPENIEEYIGADGYQALAKVLTGMTQQEVIDTIKKSGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F D Y++ NADE +PG DR ++ +PH L+E IA +A+GA Sbjct: 171 GFPTGLKWQFTHDAIGD-KKYVLCNADEGDPGAFMDRSVLEGDPHALLEAMTIAGYAVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L A+++ GLLGSN G+ DI + GAGA++CGEETA Sbjct: 230 DQGYIYVRAEYPLAVKRLNIAINQAREYGLLGSNIFGTGFKFDIDLRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR +PPFPAN G++G PT +NNVE+ A VP I+ G W++ G + ++ Sbjct: 290 LMTSIEGKRGEPRPRPPFPANKGVFGKPTLLNNVETYANVPQIILNGPEWFASIGTDKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I GGI G A GG S C+PA Q Sbjct: 350 GTKVFALGGKINNTGLVEIPMGTTLREVIYDIGGGIPQG-KAFKAAQTGGPSGGCIPA-Q 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 ++YD L ++GS +G+ +IVMD ++ F ESCG+C PCR GT Sbjct: 408 FLDMPIEYDSLIQIGSMMGSGGMIVMDEDNCMVDIARFFLQFTVDESCGKCPPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++R+V+G ++ +I+LL ++KNI+ +C LG A P+ +K FR E I Sbjct: 468 MLEILDRIVEGKGKEGDIELLETLAKNIKASALCGLGQTAPNPVLSTLKYFRDEYEAHIR 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|147841727|emb|CAN73193.1| hypothetical protein VITISV_022287 [Vitis vinifera] Length = 489 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 60 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 119 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 120 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 179 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 180 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACXSGYDFDVHIHYGAGAYICGEETALLE 239 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++GFGR+NN GTK Sbjct: 240 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 299 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 300 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 359 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ Sbjct: 360 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 419 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 420 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 467 >gi|325089901|gb|EGC43211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 512 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 62 LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481 Query: 418 QYHR 421 +Y + Sbjct: 482 KYEQ 485 >gi|85086245|ref|XP_957659.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A] gi|67477366|sp|P24917|NDUV1_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; Flags: Precursor gi|28918753|gb|EAA28423.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A] gi|39979235|emb|CAE85605.1| NADH2 dehydrogenase (ubiquinone) flavoprotein 1 precursor [Neurospora crassa] Length = 493 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 272/426 (63%), Positives = 332/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII EVKASGLRGRGGAGF Sbjct: 44 LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103 Query: 62 TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI+E LQ A++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 283 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 463 Query: 418 QYHRCN 423 ++ + N Sbjct: 464 KFAQEN 469 >gi|322710840|gb|EFZ02414.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium anisopliae ARSEF 23] Length = 486 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 266/426 (62%), Positives = 329/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWIINE+KASGLRGRGGAGF Sbjct: 37 LKDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 97 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E Y GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGGGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLA+IPGGSS P LP Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAIIPGGSSTPILPKNI 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R +G ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QYHRCN 423 ++ + N Sbjct: 457 KFAQEN 462 >gi|157828027|ref|YP_001494269.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932725|ref|YP_001649514.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. Iowa] gi|166918576|sp|A8GQT6|NUOF_RICRS RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|27312012|gb|AAO00970.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800508|gb|ABV75761.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907812|gb|ABY72108.1| NADH-quinone oxidoreductase chain F [Rickettsia rickettsii str. Iowa] Length = 421 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 292/420 (69%), Positives = 334/420 (79%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Y Sbjct: 359 RVMMRLVKGNVTKSEIDELLNVTKAIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418 >gi|307136131|gb|ADN33976.1| NADH-ubiquinone oxidoreductase flavoprotein [Cucumis melo subsp. melo] Length = 480 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 285/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 52 LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 111 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 112 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATAA 171 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER++L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 172 YIYIRGEYVNERKNLEKARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 231 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 232 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 291 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 292 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 351 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STDI+ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 352 VLMDYDALKAVQSGLGTAAVIVMDKSTDIVDAIARLSYFYKHESCGQCTPCREGTGWLWM 411 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLIKNF Sbjct: 412 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIKNF 459 >gi|297810971|ref|XP_002873369.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp. lyrata] gi|297319206|gb|EFH49628.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp. lyrata] Length = 486 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 282/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 LTD+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LTDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|320589001|gb|EFX01469.1| NADH-ubiquinone oxidoreductase mitochondrial precursor [Grosmannia clavigera kw1407] Length = 525 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 268/426 (62%), Positives = 331/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY L + G W +IL KG +WII+EVKASGLRGRGGAGF Sbjct: 76 LKDQDRIFQNLYSRYPPDLKHARKMGDWHKTKEILLKGHEWIISEVKASGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 136 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 195 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E E LQAA++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 196 TAAYIYIRGEFVYEAEVLQAAINEAYAEGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 255 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VG++GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 256 LIESIEGKPGKPRLKPPFPAAVGVFGCPSTVTNVETVAVAPTICRRGGAWFAGFGRERNQ 315 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWD LLAVIPGGSS P LP Sbjct: 316 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDKLLAVIPGGSSTPILPKSM 375 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 376 CEDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 435 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 436 TEQIMSRFEKGMGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 495 Query: 418 QYHRCN 423 ++ N Sbjct: 496 KFAAEN 501 >gi|194700414|gb|ACF84291.1| unknown [Zea mays] gi|195621570|gb|ACG32615.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] gi|238010292|gb|ACR36181.1| unknown [Zea mays] Length = 504 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 281/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L+EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|226528477|ref|NP_001141461.1| hypothetical protein LOC100273571 [Zea mays] gi|194704660|gb|ACF86414.1| unknown [Zea mays] Length = 504 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 271/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W +++ KG DW+I+E+KASGLRGRGGAGF Sbjct: 55 LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 114 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 115 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 174 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 175 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 234 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+ Sbjct: 235 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 294 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 295 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKNI 354 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 355 CDEQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 414 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 415 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 474 Query: 418 QYHR 421 +Y + Sbjct: 475 KYEQ 478 >gi|330994059|ref|ZP_08317989.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1] gi|329759005|gb|EGG75519.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1] Length = 454 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 289/421 (68%), Positives = 339/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG +L+ + +RG WD +IL +GRD IINE+KASGLRGRGGAGF Sbjct: 14 MLQDKDRIFTNLYGQGDWTLAGARARGDWDGTAEILARGRDAIINEMKASGLRGRGGAGF 73 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR+I+RH+PH L+E +IASFA+GAH Sbjct: 74 PTGVKWSFMPKKNDGRPHYLVINGDESEPGTCKDREILRHDPHKLVESALIASFAMGAHA 133 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE YA+GL+G N+ G+D D +H GAGAYICGEETALL Sbjct: 134 AYIYIRGEFYNEAMHLQHAIDEAYAAGLIGPNACGSGWDFDFYIHRGAGAYICGEETALL 193 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV TILRRGA+W+SG GR NN GT Sbjct: 194 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVSATILRRGAAWFSGLGRPNNAGT 253 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + ELIEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 254 KLMAISGHVNTPCVFEEELGVPMRELIEKHGGGVRGGWDNLLAVIPGGCSVPMLPRDVCD 313 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ GSGLGT +IVMD+STDII AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 314 TVLMDYDSLRAEGSGLGTGCMIVMDKSTDIIAAIARFSKFFKHESCGQCTPCREGTGWMM 373 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M+R+V+G A+ EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI Y Sbjct: 374 RIMDRMVQGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIRAY 433 Query: 420 H 420 Sbjct: 434 K 434 >gi|70993752|ref|XP_751723.1| NADH-ubiquinone oxidoreductase, subunit F [Aspergillus fumigatus Af293] gi|66849357|gb|EAL89685.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus fumigatus Af293] gi|159125355|gb|EDP50472.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus fumigatus A1163] Length = 496 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 275/424 (64%), Positives = 331/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LRDQDRIFTNLYGHHGTDLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 167 TAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDNQIMDFDSLKDSQSGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QYHR 421 +Y R Sbjct: 467 EYER 470 >gi|238650711|ref|YP_002916564.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic] gi|238624809|gb|ACR47515.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic] Length = 421 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 292/420 (69%), Positives = 335/420 (79%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQHALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Y Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418 >gi|67459570|ref|YP_247194.1| NADH dehydrogenase I subunit F [Rickettsia felis URRWXCal2] gi|75536030|sp|Q4UKA6|NUOF_RICFE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|67005103|gb|AAY62029.1| NADH dehydrogenase I chain F [Rickettsia felis URRWXCal2] Length = 422 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 294/418 (70%), Positives = 336/418 (80%), Gaps = 3/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG WDN +L+KGR++II EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK + +P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNSA-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM RLVKG AQK EID L V+K IEG TICALGDAAAWPIQGLI++FR IEERI Sbjct: 359 RVMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIK 416 >gi|21593325|gb|AAM65274.1| NADH dehydrogenase [Arabidopsis thaliana] Length = 486 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 279/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 58 LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD ++ +H GAGAYICGEETALLE Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W+S FGR+NN GTK Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF IS HVN PCTVEE MSI ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P Sbjct: 298 LFCISXHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MER+ G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465 >gi|147678346|ref|YP_001212561.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146274443|dbj|BAF60192.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 551 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 165/422 (39%), Positives = 243/422 (57%), Gaps = 5/422 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 Q + N + S+ + + R + + K+L +I EVK SGLRGRGGAG Sbjct: 124 FKKQQKIVLRNTIYIDPLSIEEYIGRDGYAALAKVLTQMTPAQVIEEVKKSGLRGRGGAG 183 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 FSTGMKW F P Y+V N DE +PG DR ++ +PH++IEG I +AIGA Sbjct: 184 FSTGMKWGFTA-AAPGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGYAIGAE 242 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++YVR E+ + L A+++ GLLG N ++ DI + GAGA++CGEETAL Sbjct: 243 QGYVYVRAEYPLAIQRLSYAIEKAREYGLLGKNIFGTSFNFDIEIRIGAGAFVCGEETAL 302 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L S+EGK+G+PR +PPFPA G++G PT +NNVE+ A + I+ +GA WY+ G E ++G Sbjct: 303 LASIEGKRGEPRPRPPFPAQSGVWGKPTVINNVETWANIAPIILKGADWYASIGTEKSKG 362 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G +N VE M IT E++ + GGI AV GG S C+PA + Sbjct: 363 TKVFALAGRINNTGIVEVPMGITLREIVYEIGGGIP-RKKQFKAVQTGGPSGGCIPAEHL 421 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L +G+ +G+ +IVMD T ++ F ESCG+C+PCR GT M Sbjct: 422 -DTPIDYDSLGALGAIMGSGGMIVMDEDTCMVDIAKFFLDFVVDESCGKCSPCRIGTKRM 480 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++R+ G ++ +I+LL E++ I+ +C LG A P+ I+ FR EE I + Sbjct: 481 YEILDRITNGQGREGDIELLSELATTIKNTALCGLGQTAPNPVLSTIRYFRDEYEEHIKE 540 Query: 419 YH 420 Sbjct: 541 RK 542 >gi|229586353|ref|YP_002844854.1| NADH dehydrogenase I subunit F [Rickettsia africae ESF-5] gi|228021403|gb|ACP53111.1| NADH dehydrogenase I chain F [Rickettsia africae ESF-5] Length = 421 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 291/418 (69%), Positives = 334/418 (79%), Gaps = 3/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EQSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416 >gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] Length = 602 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q ++ T N+ + S+ + ++R + + K L E + +I VK SGLRGRGGA Sbjct: 111 FFSRQVKVATRNVGIIDPLSIDEYIARDGYFALHKALKEMTPEQVIEVVKESGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y++ NADE +PG DR I+ +PH++IE IA++AIGA Sbjct: 171 GFPTGLKWEFARKSPGD-EKYMICNADEGDPGAFMDRSILEGDPHSIIEAMTIAAYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E L A+++ G LG N + DI + GAGA++CGEETA Sbjct: 230 TKGFVYVRAEYPIAIERLTVALNQAREYGFLGENILGTDFSFDIEIRIGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+GQPR+KPPFPA GL+G P+ +NNVE++A VP I+ G W+ +G E + Sbjct: 290 LMHSIEGKRGQPRVKPPFPAQKGLWGKPSNINNVETLACVPPIIYHGPQWFRQWGTEKSP 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M IT ELI + GG G + AV GG S +P Sbjct: 350 GTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPEEY 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L+++G+ +G+ +IV+D ++ F ESCG+CTPCREGT Sbjct: 409 -FDTPVDYESLQQLGAIVGSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKK 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++++ KG + +I++L ++ I+ ++C LG A P+ ++ ++ + Sbjct: 468 MYEILDKITKGEGTEEDIEILENLANVIKDSSLCGLGQTAPNPVLSTLRYYKDEYLAHVR 527 Query: 418 QYHRCN 423 C Sbjct: 528 D-KTCP 532 >gi|34580891|ref|ZP_00142371.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246] gi|28262276|gb|EAA25780.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246] Length = 421 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 291/418 (69%), Positives = 334/418 (79%), Gaps = 3/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNVQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416 >gi|226529035|ref|NP_001141093.1| hypothetical protein LOC100273176 [Zea mays] gi|194702602|gb|ACF85385.1| unknown [Zea mays] Length = 504 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 280/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN PCTVEE MSI EL+E+HCGG+RGGWDNLLAVIP GSSVP LP Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPSGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+ Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 +MERL G A+ EID+L+EV+K IEG TICALGDAAAWP+QGLI++F Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483 >gi|15892078|ref|NP_359792.1| NADH dehydrogenase I subunit F [Rickettsia conorii str. Malish 7] gi|20139048|sp|Q92JB2|NUOF_RICCN RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|15619200|gb|AAL02693.1| NADH dehydrogenase I chain F [Rickettsia conorii str. Malish 7] Length = 421 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 291/418 (69%), Positives = 334/418 (79%), Gaps = 3/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK ++ YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G NS G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM RLVKG +K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416 >gi|302895873|ref|XP_003046817.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256727744|gb|EEU41104.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 486 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 272/424 (64%), Positives = 329/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWII EVKASGLRGRGGAGF Sbjct: 37 LRDQDRIFQNLYGRYPVDLKSAKRMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 97 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 156 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E YA GL+G N+ GYD D+ VH GAGAY+CGEET+ Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYADGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 216 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGNWFAGFGRERNQ 276 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 277 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Sbjct: 397 TEQIMSRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456 Query: 418 QYHR 421 ++ + Sbjct: 457 KFAQ 460 >gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] Length = 571 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + +++ + + K+L E + +I +K SGLRGRGGA Sbjct: 85 FYAKQRRIALRNCGVINPENIDEYIAQDGYAALGKVLTEMTPEQVIQVIKDSGLRGRGGA 144 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWS +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 145 GFPTGVKWSLAAGNKAD-QKYVCCNADEGDPGAFMDRSVLEGDPHCVLEAMAIAGYAIGA 203 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + GLLG N G+D DI + GAGA++CGEETA Sbjct: 204 TKGYIYVRAEYPIAVKRLEIAIGQAREYGLLGKNIFDSGFDFDIQLRLGAGAFVCGEETA 263 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR +PP+PA GL+G P+ +NNVE+ A + I+ GA W++ G E ++ Sbjct: 264 LMTSIEGKRGEPRPRPPYPAVKGLFGKPSILNNVETYANIAQIILHGAEWFNSVGTEKSK 323 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + + VE M T E++E+ GG+ A GG S C+PA Sbjct: 324 GTKVFALGGKIKHTGLVEIPMGTTLREIVEEIGGGVP-DGKKFKAAQTGGPSGGCIPAS- 381 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD +T ++ F ESCG+CTPCR GT Sbjct: 382 LIDTPIDYDNLIAIGSMMGSGGLIVMDETTCMVDIAKFFLEFTVDESCGKCTPCRVGTKR 441 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ G +ID + E+ I+ +C LG A P+ ++ FR E + Sbjct: 442 LLEMLNKITSGTGTMEDIDKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFRDEYEAHVK 501 Query: 418 QYHRCN 423 + HRC Sbjct: 502 E-HRCP 506 >gi|320166203|gb|EFW43102.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit [Capsaspora owczarzaki ATCC 30864] Length = 480 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 266/421 (63%), Positives = 328/421 (77%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG + +++RG W +IL KG DWI+NEVK SGLRGRGGAGF Sbjct: 39 LKDSDRIFTNLYGRHDWGIKGALARGDWYKTKEILLKGHDWILNEVKKSGLRGRGGAGFP 98 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 99 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 158 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 159 YIYIRGEFYNEASNMQVAIHEAYKAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 218 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR W++ FGRE N+GTK Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRTGEWFASFGRERNQGTK 278 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISG VN P TVEE MSI ELIE+H GG+ GGWDNLLA+IPGG+SVP LP Sbjct: 279 LFCISGQVNTPVTVEEEMSIPLKELIERHAGGVIGGWDNLLAIIPGGASVPLLPRKICDD 338 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+++ SGLGTAAVIVM++ +D+I+ I RLS FYKHESCGQCTPCREG GW+ + Sbjct: 339 VLMDFDALRDVTSGLGTAAVIVMNKQSDVIRCISRLSDFYKHESCGQCTPCREGVGWLAK 398 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R V G A+ EID++ E+++ IEG TICALGDAAAWP+QGLI++FRP IE RI + Sbjct: 399 IMKRFVDGNAKPAEIDMIEELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIESRIATFQ 458 Query: 421 R 421 + Sbjct: 459 Q 459 >gi|157964179|ref|YP_001499003.1| NADH dehydrogenase I subunit F [Rickettsia massiliae MTU5] gi|166918575|sp|A8F0M0|NUOF_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|157843955|gb|ABV84456.1| NADH dehydrogenase I chain F [Rickettsia massiliae MTU5] Length = 421 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 294/420 (70%), Positives = 338/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+I+ EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNACDSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-LLC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVEMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE RI Y Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418 >gi|312066286|ref|XP_003136198.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa] gi|307768633|gb|EFO27867.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa] Length = 468 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 268/423 (63%), Positives = 320/423 (75%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M G W ++L KG+DWII E+ ASG+RGRGGAGF Sbjct: 33 LRDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 92 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM + RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA A Sbjct: 93 TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 152 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A+ E Y +G +G NS GY D+ +H GAGAYICGEETAL+E Sbjct: 153 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFIHRGAGAYICGEETALIE 212 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA P I +RGA WYS FGRE N GTK Sbjct: 213 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAEWYSSFGRERNHGTK 272 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV PCTVEE MSI ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P Sbjct: 273 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 332 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L + +GLGTAAVIVM++ DI+K I RLS FY+HESCGQCTPCREGT W+ Sbjct: 333 VLMDYDALIAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 392 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R VKG A+ EID L+E+SK IE TICALGDAAAWPIQGLI++FRP IE RI Y Sbjct: 393 VMWRFVKGQAKPSEIDSLWEISKQIEAHTICALGDAAAWPIQGLIRHFRPEIEHRISDYC 452 Query: 421 RCN 423 N Sbjct: 453 AKN 455 >gi|323508270|emb|CBQ68141.1| probable NADH2 dehydrogenase (ubiquinone) flavoprotein 1 [Sporisorium reilianum] Length = 508 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 265/426 (62%), Positives = 326/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N Y L + +RG W IL KG DWII+++K SG+RGRGGAGF Sbjct: 49 LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K + RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 109 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 168 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IYVRGEF E LQ A+ E YA GL+G N+ GYD D+ VH GAGAYICGEETA Sbjct: 169 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 228 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A PTI+RRG +W++GFGR+ N+ Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPAWFAGFGRDKNQ 288 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF+ISGHVN PC VEE MSI ELIE+HCGG+RGGWDNLL ++PGGSSVP LP + Sbjct: 289 GTKLFAISGHVNTPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 348 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D L+E S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W Sbjct: 349 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 408 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +MER +G REID++ E++K +EG TICAL DAAAWPIQGL++ FRP IEER+ Sbjct: 409 LANMMERFEEGRGNLREIDMIQELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 468 Query: 418 QYHRCN 423 Y N Sbjct: 469 LYQEKN 474 >gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] Length = 599 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 163/426 (38%), Positives = 248/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q +I T NL + S+ + ++R + + K + E + +I+EVK S LRGRGGA Sbjct: 111 FFTKQVKIATRNLGVIDPLSIDEYIARDGYFALHKAIKEMTPEEVISEVKKSELRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F+ K D Y++ NADE +PG DR I+ +PH+++E IA++A+GA Sbjct: 171 GFPTGLKWEFVRKAKGDI-KYVICNADEGDPGAFMDRAILEGDPHSVVEAMTIAAYAVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ E A++ G LG N G+ DI + GAGA++CGEETA Sbjct: 230 QKGFIYVRAEYPLAIERFSKALETAREYGFLGKNILGTGFSFDIEIRIGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR+KPP+PA GL+G PT +NNVE+ A + I+ G W++ +G E +R Sbjct: 290 LINSIEGKRGVPRVKPPYPATYGLWGKPTLINNVETYANIAPIILHGGDWFAQYGVEGSR 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M IT ELI + GG+ L AV GG S C+P Sbjct: 350 GTKVFALAGKIKNTGLVEVPMGITLRELIYEIGGGVP-DGKKLKAVQTGGPSGGCIPEEH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + YD LK++G+ +G+ +IVMD ++ F ESCGQCTPCR+GT Sbjct: 409 L-DTPITYDNLKKLGTIIGSGGMIVMDEDDCMVDVAKFFLEFTVEESCGQCTPCRDGTKK 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G + ++++L E+ ++I ++C LG A P+ ++ F + Sbjct: 468 MLEILEKITAGEGTEEDLEVLKELGEHIMKTSLCGLGQTAPQPVVSTMRYFWDEYIAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|310800932|gb|EFQ35825.1| NADH oxidoreductase [Glomerella graminicola M1.001] Length = 477 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 268/422 (63%), Positives = 330/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG +L+ + G W +I+ KG DWII+EVKASGLRGRGGAGF Sbjct: 27 LKDQDRIFQNLYGRMPPTLASAKKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 86 Query: 62 TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 87 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 146 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF+ E LQ A++E Y GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 147 SAAYIYIRGEFVHEAAVLQNAINEAYKDGLIGKNACNSGYDFDVFIHRGAGAYVCGEETS 206 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+ Sbjct: 207 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 266 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 267 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNV 326 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W Sbjct: 327 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 386 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E+R++ Sbjct: 387 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEKRME 446 Query: 418 QY 419 +Y Sbjct: 447 EY 448 >gi|119500302|ref|XP_001266908.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya fischeri NRRL 181] gi|119415073|gb|EAW25011.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya fischeri NRRL 181] Length = 496 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 274/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSI 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDNQIMDFDSLKDSQTGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QYHR 421 +Y R Sbjct: 467 EYER 470 >gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 602 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 248/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q +I T N+ + K++ + ++R + + K L E + +I VK SGLRGRGGA Sbjct: 111 FFSRQVKIATRNVGIIDPKNIDEYIARDGYFALHKALKEMTPEEVIQVVKDSGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y++ NADE +PG DR I+ +PHT+IE IA +AIGA Sbjct: 171 GFPTGLKWEFARKSPGD-EKYMICNADEGDPGAFMDRSILEGDPHTIIEAMTIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E L A+++ G LG N + DI + GAGA++CGEETA Sbjct: 230 TKGFVYVRAEYPIAIERLTVALNQAREYGFLGENILGTDFSFDIEIRIGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+GQPR+KPPFPA GL+G P+ +NNVE++A VP I+ GASW+ +G E + Sbjct: 290 LMHSIEGKRGQPRVKPPFPAQKGLWGKPSNINNVETLACVPPIIYNGASWFRQWGTEKSP 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M IT ELI + GG G + AV GG S +P Sbjct: 350 GTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPEEY 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L+++G+ +G+ +IV+D ++ F ESCG+CTPCREGT Sbjct: 409 -FDTPVDYESLQKLGAIVGSGGLIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKK 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++++ KG + +I++L + I+ ++C LG A P+ ++ ++ + Sbjct: 468 MYEILDKITKGEGTEEDIEILENLGNVIKDSSLCGLGQTAPNPVLSTLRYYKDEYIAHVK 527 Query: 418 QYHRCN 423 + +C Sbjct: 528 E-GKCP 532 >gi|221105450|ref|XP_002162472.1| PREDICTED: similar to GF15407 [Hydra magnipapillata] Length = 470 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 263/420 (62%), Positives = 324/420 (77%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L + +RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 40 LSDDDRIFTNLYGRHDWKLKGAQARGDWYKTKEIILKGHDWILNEIKTSGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 100 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 159 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 160 YIYIRGEFYNEASNMQVAIQEAYKAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 219 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG SW++ GR N G K Sbjct: 220 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPEICRRGGSWFASMGRPRNSGQK 279 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MSI ELIE+H GG+ GGWDNLL +IPGGSS P +P Sbjct: 280 LFNISGHVNHPCTVEEEMSIPLKELIERHAGGVLGGWDNLLCIIPGGSSTPLIPKKVCED 339 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L +GLGTAA+IVM++ +D+++ I RL FYKHESCGQCTPCREG GWM Sbjct: 340 VLMDFDDLIRAQTGLGTAAIIVMNKQSDVVRCIARLIEFYKHESCGQCTPCREGVGWMNN 399 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R V G A+ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRPL+EER QY Sbjct: 400 IMKRFVDGKAKSAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLLEERFAQYQ 459 >gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] Length = 626 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + ++ + K+L D +I + SGLRGRGGA Sbjct: 140 FYKKQKRIALRNCGVINPENIEEYIGTSGYEALGKVLTTMTPDDVIQVILDSGLRGRGGA 199 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F ++ Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 200 GFPTGLKWKFAKGNQAE-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMTIAGYAIGA 258 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+ + G+LG + G+D DI + GAGA++CGEETA Sbjct: 259 SQGYIYVRAEYPIAIERLEIAIRQAREYGMLGKDIFGSGFDFDIDLRLGAGAFVCGEETA 318 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ +G W+ G G E ++ Sbjct: 319 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETWANIPQIILKGPEWFVGMGTEKSK 378 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G ++ VE M T E++E+ GGI A GG S C+PA Sbjct: 379 GTKVFALGGKIHNTGLVEIPMGTTLREIVEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 437 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L E+GS +G+ +IVMD +T ++ F ESCG+CTPCR GT Sbjct: 438 L-DVPIDYDNLMEIGSMMGSGGLIVMDENTCMVDIAKFFLEFTVDESCGKCTPCRIGTRR 496 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ KG A ++D L E+ +++ ++CALG A P+ ++ FR I Sbjct: 497 MLELLDKITKGQATMEDLDKLEELCYHLKDNSLCALGQTAPNPVLSTLRYFRDEYIAHIV 556 Query: 418 QYHRCN 423 +C Sbjct: 557 D-KKCP 561 >gi|325187212|emb|CCA21752.1| ubiquinone oxidoreductase putative [Albugo laibachii Nc14] Length = 502 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 267/419 (63%), Positives = 318/419 (75%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG + + ++ RG W +L G +WII EVK SGLRGRGGAGF Sbjct: 45 LKDEDRIFTNLYGEKTWRIDGALKRGDWYRTKDLLCMGPEWIIQEVKDSGLRGRGGAGFP 104 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A FA+ A A Sbjct: 105 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLVAGFAMRARAA 164 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E L+ A+ E Y G LG NS GYD D+ +H GAGAYICGEET+LLE Sbjct: 165 YIYIRGEFFNEAVILEEAIHEAYQKGFLGVNSCGSGYDFDVYLHRGAGAYICGEETSLLE 224 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++ GR+NN GTK Sbjct: 225 SLEGKQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNSGTK 284 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIEKHCGG+RGGW NL A IPGGSSVP L + Sbjct: 285 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWGNLQACIPGGSSVPVLDEELCQD 344 Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK GSGLGTAAV + D+S D++ AI RL+ FY HESCGQCTPCREGTGWM Sbjct: 345 IMMDFDDLKNRGGSGLGTAAVTIFDKSVDMVAAIRRLAHFYTHESCGQCTPCREGTGWME 404 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ ++ KG A EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+ I ERI+ Sbjct: 405 AILVKMEKGEADLEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKIIERIED 463 >gi|189191100|ref|XP_001931889.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973495|gb|EDU40994.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 500 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 262/419 (62%), Positives = 320/419 (76%), Gaps = 4/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L + G W +IL KG +WII+E+KASGLRGRGGAGF Sbjct: 57 LKDQDRIFQNLYGHHGADLKSAQKYGDWYKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KW + YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A A Sbjct: 117 SGLKWDWDKDSKP---RYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNATAA 173 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAY+CGEET+L+E Sbjct: 174 YIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETSLIE 233 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+GTK Sbjct: 234 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQGTK 293 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L++ISGHVN PC VEE MSI +LIEKHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 294 LYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHICDD 353 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W + Sbjct: 354 QLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKWTHQ 413 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M+R KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI Y Sbjct: 414 IMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIKDY 472 >gi|54650938|gb|AAV37047.1| AT08270p [Drosophila melanogaster] Length = 702 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M RG W +I+ KG WI+NE+K SGLRGRGGAGF Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGEF E +LQ A+ E Y +G LG N+ G+D D+ V GAGAYICGEET+L+E Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MS+ ELIE+H GG+ GGWDNLLA+IPGGSS PC+ Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI DYDGL + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG W+ Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R V G AQ EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI + Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675 >gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] Length = 597 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 163/424 (38%), Positives = 249/424 (58%), Gaps = 6/424 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI N + L D ++ ++ + K L + I+ EVK SGLRGRGGAG Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMDPEAIVEEVKESGLRGRGGAG 171 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 FSTG+KWS SD Y++ NADE +PG DR ++ +PH +IEG +I ++AIGA Sbjct: 172 FSTGLKWSLCRATPSD-KKYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ ++LQ A+ + +G LG+N G++ + ++ GAGA++CGEETAL Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR++PPFPA GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G VN VE M + ++I G AV GG S CLP M Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDIGG-GIKDGGKFKAVQIGGPSGGCLPED-M 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L + G+ +G+ +++MD +T ++ F + ESCG+CTPCREG M Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++R+ +G ++ +I+ L ++ ++ ++C LG A PI +K FR EE I Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI-H 527 Query: 419 YHRC 422 +C Sbjct: 528 AKKC 531 >gi|254693013|gb|ACT79356.1| MIP04331p [Drosophila melanogaster] Length = 704 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M RG W +I+ KG WI+NE+K SGLRGRGGAGF Sbjct: 260 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 319 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ Sbjct: 320 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 379 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGEF E +LQ A+ E Y +G LG N+ G+D D+ V GAGAYICGEET+L+E Sbjct: 380 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 439 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 440 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 499 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MS+ ELIE+H GG+ GGWDNLLA+IPGGSS PC+ Sbjct: 500 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 559 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI DYDGL + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG W+ Sbjct: 560 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 619 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R V G AQ EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI + Sbjct: 620 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 677 >gi|164662034|ref|XP_001732139.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966] gi|159106041|gb|EDP44925.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966] Length = 509 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 262/422 (62%), Positives = 332/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +++RG W I+E+G ++IIN++KASG+RGRGGAGF Sbjct: 43 LRDQDRIFQNLYGQHDFRLKGALARGDWHRTRDIIERGHEFIINQMKASGIRGRGGAGFP 102 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM K + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A A+GA Sbjct: 103 SGMKWSFMLKPGWEKDPRPRYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGA 162 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E +LQ A++E Y +GL+G N+ GYD D+ VH GAGAYICGEETA Sbjct: 163 NAAYIYIRGEFFLEAYNLQVAINEAYKAGLIGKNACGSGYDFDVYVHRGAGAYICGEETA 222 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK+G+PR+KPPFPA+ G++GCPTTV NVE+++V PTI+RRG W++ FGRE N Sbjct: 223 LIESLEGKQGKPRMKPPFPADTGVFGCPTTVANVETVSVAPTIIRRGPEWFASFGRERNH 282 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL++ISGHVN PC VEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 283 GTKLYAISGHVNRPCVVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSTPMIPKEV 342 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D L++ S LGT AVIVMD+STD++KAI RL+ FY HESCGQCTPCREGT W Sbjct: 343 CERTLMDFDSLRDNQSALGTGAVIVMDKSTDLVKAIARLTKFYHHESCGQCTPCREGTAW 402 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +M R G A REID+++E+++ +EG TIC L DA+AWPIQGL+++FRP++EERI Sbjct: 403 LDSMMTRFENGRASLREIDMIWEITRQMEGHTICGLADASAWPIQGLLRHFRPVVEERIK 462 Query: 418 QY 419 +Y Sbjct: 463 EY 464 >gi|15603992|ref|NP_220507.1| NADH dehydrogenase I subunit F [Rickettsia prowazekii str. Madrid E] gi|7387969|sp|Q9ZE33|NUOF_RICPR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|3860683|emb|CAA14584.1| NADH DEHYDROGENASE I CHAIN F (nuoF) [Rickettsia prowazekii] gi|292571708|gb|ADE29623.1| NADH dehydrogenase I chain F [Rickettsia prowazekii Rp22] Length = 421 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 289/420 (68%), Positives = 336/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNLYG Q L S RG W N +++KGRD+II+EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLYGQQSYDLKSSQKRGDWYNTKALIDKGRDFIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC +EE M + ELIEK+ GG+RGGW+NL A+IPGG+SVP LP + Sbjct: 240 KVFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNLKAIIPGGASVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLV G A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE+RI + Sbjct: 359 RVMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIKSF 418 >gi|290988111|ref|XP_002676765.1| predicted protein [Naegleria gruberi] gi|284090369|gb|EFC44021.1| predicted protein [Naegleria gruberi] Length = 480 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 266/421 (63%), Positives = 331/421 (78%), Gaps = 2/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLY + + +M RG W ++ KG DWII+++K SGLRGRGGAGF+ Sbjct: 46 LKDKDRIFTNLYENFDRHIDGAMKRGDWFKTKDLINKGPDWIIDQIKKSGLRGRGGAGFN 105 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPK D YLV+N+DESEPGTCKDR+I+R++PH L+EG ++ F + A Sbjct: 106 SGLKYSFMPKSNPDGRPSYLVINSDESEPGTCKDREIVRNDPHKLVEGALLVGFGMRARA 165 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E LQ A+DE Y G LG N+ GY+ D+ VH GAGAYICGEETAL+ Sbjct: 166 AYIYIRGEFYNESRRLQEAIDEAYQKGFLGKNACGTGYEFDVYVHRGAGAYICGEETALI 225 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G+PRLKPPFPA VGL+ CPTTV NVE++AVVPTILRR W++GFGR+NN GT Sbjct: 226 ESIEGKQGKPRLKPPFPAGVGLFSCPTTVTNVETVAVVPTILRRSPEWFAGFGRKNNAGT 285 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL++ISGHVN PC VEE MSI ELIE+H GG+RGGWDNLLA+IPGGSSVP +P Sbjct: 286 KLYAISGHVNTPCVVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLIPKEICE 345 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+E+ SGLGTAAV+VMD+STDI+ AI RLS FY HESCGQCTPCREGTGW++ Sbjct: 346 TVLMDFDALREVQSGLGTAAVMVMDKSTDIVDAIARLSKFYAHESCGQCTPCREGTGWLL 405 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +M+R+VKG A+ EID L EVS+ IEG TICALGDAAAWP+QGLI++FR +E+RI +Y Sbjct: 406 NMMDRMVKGNAEIEEIDTLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRGEMEDRIKKY 465 Query: 420 H 420 Sbjct: 466 K 466 >gi|51473234|ref|YP_066991.1| NADH dehydrogenase I subunit F [Rickettsia typhi str. Wilmington] gi|81390307|sp|Q68XY3|NUOF_RICTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|51459546|gb|AAU03509.1| NADH dehydrogenase (ubiquinone) subunit F [Rickettsia typhi str. Wilmington] Length = 421 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 292/420 (69%), Positives = 336/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IF NLYG Q L S RG W N +L+KGRD+II+EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFINLYGQQSYDLKSSKKRGDWYNTKALLDKGRDFIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYTEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC +EE+M I ELIEK+ GG+RGGWDNL A+IPGG+SVP LP + Sbjct: 240 KIFCISGHVNKPCNIEEAMGIPLKELIEKYAGGVRGGWDNLKAIIPGGASVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GSGLGT +IVMDRSTDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDRSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLV G A+K EI+ L V+K IEG TICALGDAAAWPIQGLI++FR IEERI + Sbjct: 359 RVMMRLVNGNAKKTEIETLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEERIKNF 418 >gi|296116530|ref|ZP_06835140.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC 23769] gi|295976742|gb|EFG83510.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC 23769] Length = 441 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 285/421 (67%), Positives = 338/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTNLYG L+ + RG W++ IL +GRD II E+KASGLRGRGGAGF Sbjct: 1 MLEDKDRIFTNLYGQNDWRLAGARQRGDWNDTAAILARGRDAIIAEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLV+N DESEPGTCKDR+I+RH+PH LIE +IASFA+GAH Sbjct: 61 PTGVKWSFMPKTSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHK 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF E + LQ A++E Y +GL+G N+ G+D D +H GAGAYICGEETALL Sbjct: 121 SYIYIRGEFFNEAQHLQHAIEEAYEAGLIGPNAAGSGWDFDFYIHRGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV TILRRGA+W+SG GR NN GT Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVTSTILRRGAAWFSGLGRPNNAGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL +ISGHVN PC EE + + ++IEKH GG+RGGWDNLLAVIPGG SVP LP Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLRDIIEKHGGGVRGGWDNLLAVIPGGCSVPMLPREVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD L+ GSGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM Sbjct: 301 TVLMDYDSLRAEGSGLGTACMIVMDKSTDIIRAIARFSQFFKHESCGQCTPCREGTGWMM 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM+R+V+G A+ EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI Y Sbjct: 361 RVMQRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIHAY 420 Query: 420 H 420 Sbjct: 421 K 421 >gi|45550452|ref|NP_611238.2| CG11423 [Drosophila melanogaster] gi|45445490|gb|AAF57825.3| CG11423 [Drosophila melanogaster] Length = 702 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L +M RG W +I+ KG WI+NE+K SGLRGRGGAGF Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA+ Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGEF E +LQ A+ E Y +G LG N+ G+D D+ V GAGAYICGEET+L+E Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV PCTVEE MS+ ELIE+H GG+ GGWDNLLA+IPGGSS PC+ Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI DYDGL + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG W+ Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R V G AQ EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI + Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675 >gi|302407582|ref|XP_003001626.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium albo-atrum VaMs.102] gi|261359347|gb|EEY21775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium albo-atrum VaMs.102] Length = 477 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 270/426 (63%), Positives = 326/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NL G +L+ + G W +IL KG +WII+EVKASGLRGRGGAGF Sbjct: 28 LKDSDRIFQNLNGRLPPTLASAKKMGDWHKTKEILAKGHEWIISEVKASGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 88 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 147 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y GL+G N+ GYD D+ VH GAGAY+CGEET+ Sbjct: 148 TAAYIYIRGEFYHEAAVLQTAINEAYKDGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 207 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+ Sbjct: 208 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 267 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 268 GTKLFCISGHVNNPVTVEEEMSIPLRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKDV 327 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W Sbjct: 328 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 387 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ Sbjct: 388 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMA 447 Query: 418 QYHRCN 423 +Y N Sbjct: 448 EYAAQN 453 >gi|121707889|ref|XP_001271969.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus clavatus NRRL 1] gi|119400117|gb|EAW10543.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus clavatus NRRL 1] Length = 496 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 273/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVNKGDDWLISEIKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKGWDKDPRPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++ FG E N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFNSFGAERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKAV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 IMD+D LK+ SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDDQIMDFDSLKDSQSGLGTAAVIVMDKSTDIIRAISRLSKFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TAQIMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QYHR 421 +Y + Sbjct: 467 EYEQ 470 >gi|67538918|ref|XP_663233.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Aspergillus nidulans FGSC A4] gi|40743532|gb|EAA62722.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Aspergillus nidulans FGSC A4] gi|259484902|tpe|CBF81519.1| TPA: NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Eurofung) [Aspergillus nidulans FGSC A4] Length = 497 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 270/422 (63%), Positives = 332/422 (78%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LKDQDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVFIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++GFGRE N Sbjct: 227 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFAGFGRERNA 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNL AVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLKAVIPGGSSTPIIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVIVMDKSTDVVRAISRLSTFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++M+RL KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 407 TLQMMQRLEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466 Query: 418 QY 419 +Y Sbjct: 467 EY 468 >gi|51947519|gb|AAU14244.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Euplotes sp. BB-2004] Length = 470 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 266/423 (62%), Positives = 321/423 (75%), Gaps = 1/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY + ++ RG W I+ G DWII+++KASGLRGRGGAGF Sbjct: 32 LQDQDRIFTNLYRDGDPFIDGALKRGDWHKTKDIVLNGDDWIIDQIKASGLRGRGGAGFP 91 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMPKV RP YLV+NADESEPGTCKDR+IMRH+PH LIEG + ++ A A Sbjct: 92 SGLKYSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLIEGALCVGVSMRAKAA 151 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF + L+ A+ E Y GL+G N+ GYD D+ V HGAGAYICGEET L+E Sbjct: 152 YIYIRGEFWYQYNCLERAISEAYERGLIGKNACGTGYDFDVHVVHGAGAYICGEETGLIE 211 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PR+KPPFPAN GLYGCPTTV NVE++AV PTILRR W++ FGR+NN GTK Sbjct: 212 SLEGKQGKPRMKPPFPANAGLYGCPTTVTNVETVAVCPTILRRTPEWFASFGRKNNAGTK 271 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF++SGHVN P EE MSI ELIEKHCGG+ GGWDNL A+IPGGSSVP LP Sbjct: 272 LFAVSGHVNNPGVFEEEMSIPLRELIEKHCGGVTGGWDNLKAIIPGGSSVPLLPKRICDD 331 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+++ SGLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREGT WM Sbjct: 332 VLMDFDALRDVRSGLGTAAVIVMDKSTDVIAAIHRLSKFYAHESCGQCTPCREGTSWMED 391 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ KG A EID+L E+S IEG TICALGDAAAWP+QGLI++FR +E+RI+ Y Sbjct: 392 MLGRMRKGNADFAEIDMLEELSYQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRIEDYK 451 Query: 421 RCN 423 N Sbjct: 452 AEN 454 >gi|239948357|ref|ZP_04700110.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of Ixodes scapularis] gi|239922633|gb|EER22657.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of Ixodes scapularis] Length = 417 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 293/418 (70%), Positives = 336/418 (80%), Gaps = 3/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG W+N +L+KGRD+II EVK SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y GL+G N+ G+ +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNETSNIQRALDEAYKEGLIGKNACGSGFYCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+R GWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRDGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IEERI Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIK 416 >gi|225682624|gb|EEH20908.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb03] Length = 515 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++ G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 65 LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484 Query: 418 QYHR 421 Y + Sbjct: 485 NYEQ 488 >gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Coprococcus catus GD/7] Length = 594 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 161/422 (38%), Positives = 236/422 (55%), Gaps = 6/422 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q R+ N + +S+ + + G ++ + ++L E D +I + ASGLRGRGGAGF T Sbjct: 111 QHRVALRNCGIINPESIDEYIGTGGYEALGRVLTEMSPDDVIETILASGLRGRGGAGFPT 170 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F + Y+ NADE +PG DR ++ +PH ++E IA +AIGA + Sbjct: 171 GMKWKFASGNRGNVQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGASQGY 230 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ E L A+ + GLLG N G+D DI + GAGA++CGEETAL+ S Sbjct: 231 IYVRAEYPIAVERLNIAIKQAREYGLLGKNIFDSGFDFDIDLRLGAGAFVCGEETALMTS 290 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ GA W++ G E ++GTK+ Sbjct: 291 IEGNRGEPRPRPPFPAVKGLFASPTILNNVETYANIPQIILNGAEWFASMGTEKSKGTKV 350 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G +N VE M T +IE GGI A GG S C+PA M Sbjct: 351 FAVNGKINNTGLVEVPMGTTLRTIIEDIGGGIP-NGKKFKAAQTGGPSGGCIPAEHM-DI 408 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DYD L +GS +G+ +IVMD T ++ F ESCG+CTPCR GT + + Sbjct: 409 PIDYDNLISIGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRVGTKRLYEM 468 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++++ KG ++D + E+ I+ +C LG A P+ ++ FR I + Sbjct: 469 LDKITKGEGTLEDLDKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFRDEYIAHIVD-KK 527 Query: 422 CN 423 C Sbjct: 528 CP 529 >gi|296425638|ref|XP_002842347.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638611|emb|CAZ86538.1| unnamed protein product [Tuber melanosporum] Length = 499 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +IL KG DWII E+K SGLRGRGGAGF Sbjct: 50 LKDQDRIFQNLYGHHGTDLKSAMKYGDWYKTKEILLKGHDWIIGEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +GMKWSFM + P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 110 SGMKWSFMTPPGWNTGTTPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMEA 169 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y++GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 170 TAAYIYIRGEFYHEATVLQRAIQEAYSAGLIGKNACGSGYDFDVFVHRGMGAYVCGEETS 229 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+++V PTI RRG SW++ FGR+ N Sbjct: 230 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETVSVAPTICRRGGSWFASFGRKRNE 289 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL A+IPGGSS P LP Sbjct: 290 GTKLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLQAIIPGGSSTPILPRKI 349 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK++ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGT W Sbjct: 350 CDDVLMDFDALKDVQSGLGTAAVIVMDKSTDVVRAISRLSKFYKHESCGQCTPCREGTRW 409 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++MER KG ++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ Sbjct: 410 TAQIMERFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMQ 469 Query: 418 QYHRCN 423 + + + Sbjct: 470 AHAQAS 475 >gi|295669264|ref|XP_002795180.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb01] gi|226285114|gb|EEH40680.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb01] Length = 515 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 270/424 (63%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L +M G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 65 LKDQDRIFQNLYGHHGADLKTAMKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 244 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484 Query: 418 QYHR 421 +Y + Sbjct: 485 KYEQ 488 >gi|226290045|gb|EEH45529.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides brasiliensis Pb18] Length = 515 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG G L ++ G W +I+ KG DWII+E+KASGLRGRGGAGF Sbjct: 65 LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA A+ A Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A+ E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++ FGRE N+ Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484 Query: 418 QYHR 421 Y + Sbjct: 485 NYEQ 488 >gi|323453876|gb|EGB09747.1| hypothetical protein AURANDRAFT_24188 [Aureococcus anophagefferens] Length = 469 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 271/424 (63%), Positives = 331/424 (78%), Gaps = 1/424 (0%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 DQDRIFTNLYG + L D+ RG W I+ G DWI+ E+K SGLRGRGGAGF + Sbjct: 2 KDQDRIFTNLYGEEDWRLGDAKKRGDWHMTKDIMWMGPDWIVQEMKDSGLRGRGGAGFPS 61 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK RP +LV+NADESEPGTCKDR+IMR +PH L+EGC++A +A+ A + Sbjct: 62 GLKWSFMPKASDGRPSFLVINADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARACY 121 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE+ E + A+ E Y +GL+G N+ GYD D+ +H GAGAY+CGEETAL+ES Sbjct: 122 IYIRGEYFNEAMVMDEAIHEAYTAGLIGKNACGSGYDFDMYLHRGAGAYVCGEETALIES 181 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G+PRLKPPFPANVG++GCPTTV NVE+IAV PTILRRGASW++GFGR+NN GTKL Sbjct: 182 LEGKQGKPRLKPPFPANVGVFGCPTTVTNVETIAVAPTILRRGASWFTGFGRKNNAGTKL 241 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+ISGHVN P VEE MSI F ELI+KHCGG+RGGW+ L AVIPGGSSVP LP + A Sbjct: 242 FAISGHVNNPIVVEEEMSIPFRELIDKHCGGVRGGWNKLQAVIPGGSSVPVLPIEECEEA 301 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +MD+D LK GSGLGTAAV VMD + D+I AI RL+ FY+HESCGQCTPCREGTGW+ + Sbjct: 302 LMDFDDLKARGSGLGTAAVTVMDDTVDMIAAIRRLAHFYRHESCGQCTPCREGTGWLETI 361 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+ G A REI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+P+IEERI Sbjct: 362 LERMEVGDADVREIGMLDEISRQIEGHTICALGDAAAWPVQGLIRRFQPVIEERIADPQG 421 Query: 422 CNFQ 425 +F+ Sbjct: 422 FDFE 425 >gi|3032|emb|CAA39676.1| 51 kD subunit of NADH dehydrogenase (ubiquinone) [Neurospora crassa] Length = 493 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 270/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +IL KG DWII EVKASGLRGRGGAGF Sbjct: 44 LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103 Query: 62 TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEFI+E LQ A++E YA GL+G N+ GYD D+ +H GAGAY+CGEET+ Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+ V PTI RRG +W++GFGRE N+ Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETAVVAPTICRRGGNWFAGFGRERNQ 283 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELI+KHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R KG ++REID+L E++K +EG TICALG+ AWPIQGLI++FRP +E RI Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGERFAWPIQGLIRHFRPELEARIR 463 Query: 418 QYHRCN 423 ++ + N Sbjct: 464 KFAQEN 469 >gi|157864056|ref|XP_001687575.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major strain Friedlin] gi|68223786|emb|CAJ02018.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania major strain Friedlin] Length = 481 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G + + RG W IL KG DW+INE+KASGLRGRGGAGF Sbjct: 20 LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK DRP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E S++ A+ E Y G LG N+ G+D D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MS+ EL+E+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++ Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|71896123|ref|NP_001026754.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Gallus gallus] gi|53136784|emb|CAG32721.1| hypothetical protein RCJMB04_33n14 [Gallus gallus] Length = 459 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 277/419 (66%), Positives = 330/419 (78%), Gaps = 1/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +IL KG DWI+ E+KASGLRGRGGAGF Sbjct: 31 LKDEDRIFTNLYGRHEWRLQGALRRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+GA A Sbjct: 91 TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 150 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GLLG N+ Y D+ V GAGAYICGEETAL+E Sbjct: 151 YIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEETALIE 210 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK Sbjct: 211 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRERNSGTK 270 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+RGGWDNLLAVIPGGSS P LP Sbjct: 271 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKSVCET 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAAVIVMD+STDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 331 VLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++ Sbjct: 391 VMARFVRGDAQAAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMRRF 449 >gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 584 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 ML Q RI N + + + D + G ++ + K+L + +I E+K SGLRGRGGA Sbjct: 98 MLKSQVRIALKNCGRINPEDIDDYIKNGGYEALKKVLTSMTPEEVIEEIKISGLRGRGGA 157 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW K D Y+V NADE +PG DR I+ +PH ++EG IA++AIGA Sbjct: 158 GFPTWFKWDAARKASGDI-KYVVCNADEGDPGAFMDRSILEGDPHAVLEGMTIAAYAIGA 216 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ LLG+N + DI + GAGA++CGEETA Sbjct: 217 KEGYIYVRAEYPLAIKRLEIAIEQARNRNLLGNNILNTNFSFDIKLKKGAGAFVCGEETA 276 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PRLKPPFPA GL+G PT +NNVE+ A VP I+ G ++ G E ++ Sbjct: 277 LIASIEGERGMPRLKPPFPAQSGLWGRPTNINNVETYANVPWIITNGGKAFASLGTEKSK 336 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M ++ E+I GGI+ AV GG S C+PA Sbjct: 337 GTKVFALAGKIKRGGLVEVPMGMSLREVIYNIGGGIKDD-KAFKAVQMGGPSGGCIPAD- 394 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + + G+ +G+ +IVMD +T ++ F ESCG+CT CR GT Sbjct: 395 LIDTPVDYESITKTGAIMGSGGMIVMDETTCMVDIARFFLEFTCKESCGKCTYCRVGTRR 454 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++R+ G + +++LL E++ +++ ++C LG A P+ ++ F+ I Sbjct: 455 MLEILDRICNGEGRDGDLELLEELAVSVKDGSLCGLGQTAPNPVLTTLRYFKDEYIAHIR 514 Query: 418 QYHRCN 423 +C Sbjct: 515 D-KKCP 519 >gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus litoralis DSM 5473] Length = 555 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 153/424 (36%), Positives = 242/424 (57%), Gaps = 5/424 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + + N + + + + ++ G ++ + K L+ + II+ + SGLRGRGGAGF Sbjct: 65 FAKQKKIVLENSGYINPEDIEEYIAAGGYEALKKALKMEPEEIIDIITKSGLRGRGGAGF 124 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F + D Y++ NADE +PG DR+++ +PH +IEG +I ++AIGA Sbjct: 125 PTGLKWKFTRQAKGD-EKYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 183 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIYVR E+ + L+ A+ + G LG N G+ DI++ GAGA++CGEETAL+ Sbjct: 184 GFIYVRAEYPLAVKRLRIALQQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALI 243 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G PR +PP+PA GL+G PT +NNVE+ A VP I+R G Y+ G E ++GT Sbjct: 244 ASIEGKRGMPRPRPPYPAQKGLFGKPTNINNVETWANVPWIIRHGPEAYASLGTEKSKGT 303 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F++SG + + VE M IT E++ + GG + G + AV GG S C+P + Sbjct: 304 KVFALSGKIKHGGNVEVPMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIPEE-LF 361 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + G+ +G+ ++VMD T ++ F ESCG+CT CR GT M Sbjct: 362 DTPVDYESVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMW 421 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++++ KG +I L E++ ++ ++C LG A P+ ++ FR + Sbjct: 422 EILDKITKGQGTMEDIKELEELAPMVKAGSLCGLGQTAPNPVLTTLQYFRDEYIAHVKD- 480 Query: 420 HRCN 423 RC Sbjct: 481 KRCP 484 >gi|209154510|gb|ACI33487.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo salar] gi|223647304|gb|ACN10410.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo salar] gi|223673187|gb|ACN12775.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo salar] Length = 474 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 333/421 (79%), Gaps = 1/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L + SRG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 48 LADQDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW FM K RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A A+GA A Sbjct: 108 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E YA+GL+G NS GYD D+ V GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNSCGSGYDFDVFVMRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+ GFGRE N GTK Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFLGFGRERNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKDLIERHAGGVRGGWDNLLCVIPGGSSTPLIPRSVCDT 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + +GLGTAA+IVMD+STD+I+AI RL FYKHESCGQCTPCREG WM + Sbjct: 348 VLMDFDGLVQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 407 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R VKG A+ EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ Sbjct: 408 MMWRFVKGDARAAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPIMETRIAEFQ 467 Query: 421 R 421 + Sbjct: 468 Q 468 >gi|115391293|ref|XP_001213151.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] gi|114194075|gb|EAU35775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] Length = 496 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 272/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LQDKDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNS 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGTAAV+VMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVVVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+RL G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP IE RI Sbjct: 407 TMQMMQRLETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPEIEARIQ 466 Query: 418 QYHR 421 +Y + Sbjct: 467 EYSK 470 >gi|157825290|ref|YP_001493010.1| NADH dehydrogenase I subunit F [Rickettsia akari str. Hartford] gi|166918572|sp|A8GM77|NUOF_RICAH RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|157799248|gb|ABV74502.1| NADH dehydrogenase I chain F [Rickettsia akari str. Hartford] Length = 423 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 292/420 (69%), Positives = 337/420 (80%), Gaps = 3/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML ++D+IFTNL+G Q L S RG WDN +L+KGRD+II E+K SGLRGRGGAGF Sbjct: 1 MLKEEDKIFTNLHGGQIHDLKSSKKRGDWDNTKALLDKGRDFIIEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STGMKWSFMPK S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ Sbjct: 61 STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++Q A+DE Y L+G N+ G+D +I +H GAGAYICGEETALL Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PRLKPPFPA GLYGCPTT+NNVESIAVVPTILRR ASW++ G+ NN GT Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRRASWFASIGKPNNTGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE+M I+ ELIEK+ GG+RGGWDNL A+IPGGSSVP LP + Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GSGLGT +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 EVDMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVM RLVKG A+K EID L V+K IEG TICALGDAAAWPIQGLI++FR IE+RI Y Sbjct: 359 RVMIRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEDRIKSY 418 >gi|146077013|ref|XP_001463061.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] gi|134067143|emb|CAM65408.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] gi|322496491|emb|CBZ31561.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 481 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G + + RG W IL KG DW+INE+KASGLRGRGGAGF Sbjct: 20 LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK DRP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E S++ A+ E Y G LG N+ G++ D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWNFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MS+ ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++ Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|145258049|ref|XP_001401928.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS 513.88] gi|134074533|emb|CAK38826.1| mitochondrial proton-pumping NADH:ubiquinone reductase nuo51-Aspergillus niger Length = 496 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 273/424 (64%), Positives = 335/424 (79%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 46 LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF +E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 166 NAAYIYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI+ ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 406 TMQMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465 Query: 418 QYHR 421 +Y + Sbjct: 466 EYSK 469 >gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] Length = 906 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + D ++ G + + K L +++EV SGLRGRGGA Sbjct: 414 FFHPQHRVALRNCGVINPEDIDDYLASGGYGGLAKALTAMTPAQVVDEVTKSGLRGRGGA 473 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW+F D P Y+V NADE +PG DR I+ +PH ++E IA +AIGA Sbjct: 474 GFLTGRKWAFTA-AAPDTPKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGA 532 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + +GLLG + G+ DI + GAGA++CGEETA Sbjct: 533 RQGYIYVRAEYPVAVHRLEVAIAQARQAGLLGEDILGTGFSFDIDLRLGAGAFVCGEETA 592 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PP+PA GL+G PT +NNVE+ A +P I+ GA+WY+ G E ++ Sbjct: 593 LLHSVSGKRGEPRARPPYPALSGLWGKPTLLNNVETYANIPQIIVNGAAWYAAMGTERSK 652 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G +N +E M T +I GGI GG AV GG S CLPA Sbjct: 653 GTKIFSLAGKINNTGLIEVPMGTTLRTIIYDIGGGIPGG-KAFKAVQTGGPSGGCLPAEY 711 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD S ++ F + ESCG+CTPCR GT Sbjct: 712 L-DTPIDYDSLIAVGSMMGSGGLIVMDESDCMVDIARFYLEFTQDESCGKCTPCRIGTRR 770 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ + +G + ++++ L E+ ++I ++C LG A + ++ FR E I+ Sbjct: 771 LLEIITGITEGKGEPKDLERLEELGRDIREASLCGLGQTAPNLVLSTLRYFRHEYEAHIN 830 Query: 418 QYHRCN 423 + RC Sbjct: 831 -HKRCP 835 >gi|310816709|ref|YP_003964673.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25] gi|308755444|gb|ADO43373.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25] Length = 437 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 317/432 (73%), Positives = 358/432 (82%), Gaps = 15/432 (3%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML+DQDRIFTN+YG +SL+ + RGH+D I+ KGRDWI+NE+KASGLRGRGGAGF Sbjct: 1 MLSDQDRIFTNIYGQHDRSLAGAQMRGHFDGTAGIIAKGRDWIVNEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK SDRP YLVVNADESEPGTCKDR+I+RHEP LIEGC++ASFAI AH Sbjct: 61 STGLKWSFMPKD-SDRPAYLVVNADESEPGTCKDREILRHEPFALIEGCLVASFAINAHA 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+IRERE+LQAA+D CY +GLLG+N+ G+D D+ +HHGAGAYICGEETALL Sbjct: 120 CYIYIRGEYIREREALQAAIDACYDAGLLGANAAGSGWDFDLYLHHGAGAYICGEETALL 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKG PR+KPPFPA GLYGCPTTVNNVESIAV PTILRRGASW+SGFGR NN GT Sbjct: 180 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSGFGRPNNAGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHC-------------GGIRGGWDNLLAVIPG 286 KLF+ISGHVN PC VEE MSI F ELI++HC GGIRGGWDNL VIPG Sbjct: 240 KLFAISGHVNRPCIVEEEMSIPFRELIDRHCGGIRGGGGTARHCGGIRGGWDNLKGVIPG 299 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 GSSVP LPA M AIMD+D L+ SGLGTAAVIVMD+S DI+KAIWRLS FYKHESCG Sbjct: 300 GSSVPVLPASVMGEAIMDFDWLRAQQSGLGTAAVIVMDQSVDIVKAIWRLSKFYKHESCG 359 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 QCTPCREGTGWMMRVMERLV G A EID+L EV+K +EG TICALGDAAAWPIQGL++ Sbjct: 360 QCTPCREGTGWMMRVMERLVAGTADPAEIDMLIEVTKQVEGHTICALGDAAAWPIQGLVR 419 Query: 407 NFRPLIEERIDQ 418 +FRP IE R+ Q Sbjct: 420 HFRPEIEARLHQ 431 >gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] Length = 595 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + +++ + + ++ + +L + +I + SGLRGRGGA Sbjct: 109 FYKKQHRVALRNCGVINPENIEEYIGTRGYEALGTVLTSMKPEEVIQVILDSGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 169 GFPTGLKWKFAAANEAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L A+++ GLLG N + G+D DI + GAGA++CGEETA Sbjct: 228 SQGYIYVRAEYPIAVERLNIAIEQAREYGLLGKNIFETGFDFDIDIRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE++A +P I+ GA W+S G E ++ Sbjct: 288 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQIILNGAEWFSSMGTEKSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN VE M T E++E+ GGI A GG S C+PA Sbjct: 348 GTKVFALGGKVNNTGLVEIPMGTTLREIVEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 407 -FDVPIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRVGTRR 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G ++D L E++ +++ ++CALG A P+ ++ FR I Sbjct: 466 MLEILEKITNGQGTMEDLDKLEELAAHLKTNSLCALGQTAPNPVLSTMRYFRDEYVAHIV 525 Query: 418 QYHRCN 423 +C Sbjct: 526 D-KKCP 530 >gi|54792418|emb|CAH65683.1| NADH-quinone oxidoreductase [Nilaparvata lugens] Length = 462 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 260/417 (62%), Positives = 315/417 (75%), Gaps = 1/417 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L ++ RG W +I+ KG D+IINEVKASGLRGRGGAGF Sbjct: 43 LNDSDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADFIINEVKASGLRGRGGAGFP 102 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFM K RP YL VNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 103 SGLKWSFMNKPSDGRPKYLCVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 162 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ G+D D+ +H GAGAYICGEETAL+E Sbjct: 163 YIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGTGFDFDVYMHRGAGAYICGEETALIE 222 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR N GTK Sbjct: 223 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNTGTK 282 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MS+ ELIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 283 LFNISGHVNRPCTVEEEMSVPLRELIERHAGGVRGGWDNLLAVIPGGSSTPLIPKRVCDD 342 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + GTAAVIVMD+STDIIKAI RL VFYKHESCGQCTPCREG WM + Sbjct: 343 VLMDFDALIAAETSFGTAAVIVMDKSTDIIKAIARLIVFYKHESCGQCTPCREGIAWMHK 402 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +M+R VKG A+ EID+L+E+SK + WP+QGLI++FRP IE R+ Sbjct: 403 MMQRFVKGDARPAEIDMLWEISKRLRDTLFARWVTGLRWPVQGLIRHFRPEIENRMK 459 >gi|322488209|emb|CBZ23455.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 481 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 267/424 (62%), Positives = 328/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G + + RG W IL KG DW+INE+KASGLRGRGGAGF Sbjct: 20 LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK DRP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E +++ A+ E YA G LG ++ G+D D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRAVEKAIHEAYAKGYLGKSACGSGWDFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASLEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISGHVN PCTVEE MS+ ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLYCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD++TD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKTTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERI+++ Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIERF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] Length = 639 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + + + G ++ + +L EK + +I + SGLRGRGGA Sbjct: 153 FYKKQHRVALRNCGVINPEKIDEYIGTGGYEALGIVLTEKKPEDVIQILLDSGLRGRGGA 212 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F +D Y+ NADE +PG DR I+ +PH ++E IA +AIGA Sbjct: 213 GFPTGLKWKFAAGNDAD-QKYVCCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGA 271 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ GLLG N G+D DI + GAGA++CGEETA Sbjct: 272 SQGYIYVRAEYPIAVQRLEIAIEQAREYGLLGKNIFDSGFDFDIELRLGAGAFVCGEETA 331 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ G W++ G E ++ Sbjct: 332 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETYANIPQIIVNGPEWFASMGTEKSK 391 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G ++ VE M T E++E+ GG+ A GG S C+PA Sbjct: 392 GTKVFALGGKIHNTGLVEIPMGTTLREIVEEIGGGVP-NGKKFKAAQTGGPSGGCIPAEH 450 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD T ++ F ESCG+CTPCR GT Sbjct: 451 L-DIPIDYDNLLSIGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRIGTRR 509 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ KG A ++D L E+ +++ ++CALG A P+ ++ FR I Sbjct: 510 MLEILEKITKGQATMEDLDKLEELCYHLQSNSLCALGQTAPNPVLSTLRYFRDEYIAHIV 569 Query: 418 QYHRCN 423 +C Sbjct: 570 D-KKCP 574 >gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 610 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 155/429 (36%), Positives = 245/429 (57%), Gaps = 10/429 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I N+ + S+ + ++R + + K L + +I E+K SGLRGRGGA Sbjct: 114 FFARQVKIALRNVGVVDPMSIEEYIARDGYFALHKALTTMTPEDVIKEIKDSGLRGRGGA 173 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + SD Y++ NADE +PG DR ++ +PH+++E IA +AIGA Sbjct: 174 GFPTGLKWELARQQKSDI-KYMICNADEGDPGAFMDRSVLEGDPHSIVEAMTIAGYAIGA 232 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E L A++ + G LG N + DI + GAGA++CGEETA Sbjct: 233 QKGFVYVRAEYPLAIERLGRAIETAHEYGFLGENILGTNFSFDIEIRIGAGAFVCGEETA 292 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+GQPR+KPPFP GL+G P+ +NNVE++++VP I+ +GASW+ +G E + Sbjct: 293 LMHSIEGKRGQPRVKPPFPVQKGLWGKPSVINNVETLSLVPPIILKGASWFRQYGTEKSP 352 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M IT EL+ + GG + AV GG S +P+ Sbjct: 353 GTKVFALAGKIKNTGLVEVPMGITLRELLYEIGGG-HPQGKQIKAVQTGGPSGGVIPSE- 410 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L ++G+ +G+ +IV+D ++ F ESCG+CTPCREGT Sbjct: 411 FFDTPVDYESLGKLGAIMGSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKV 470 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++++ KG +I+ L +++ I+ ++C LG A P+ ++ +R E + Sbjct: 471 MYDLLDKITKGEGTMEDIEKLERLAQVIKDSSLCGLGQTAPNPVLSTLRYYRHEYEAHVK 530 Query: 418 QY----HRC 422 +C Sbjct: 531 DNICPAKKC 539 >gi|225630643|ref|YP_002727434.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi] gi|225592624|gb|ACN95643.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi] Length = 417 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G + L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A Sbjct: 61 STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSS P +P Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414 >gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5] gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5] Length = 597 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + + + G ++ + +L EK + +I + SGLRGRGGA Sbjct: 111 FYKKQKRVALRNCGVINPEDIEEYIGTGGYEALGTVLTEKKPEDVIQILLDSGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 171 GFPTGLKWKFAAANAAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + GLLG N + G+D DI + GAGA++CGEETA Sbjct: 230 SQGYIYVRAEYPIAVKRLEIAIGQAREYGLLGKNIFESGFDFDIELRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ G W++ G E ++ Sbjct: 290 LMTSIEGNRGEPRPRPPFPALKGLFQRPTILNNVETYANIPQIIVNGPEWFASMGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E++E+ GG+ A GG S C+PA Sbjct: 350 GTKVFALGGKINNTGLVEIPMGTTLREIVEEIGGGVP-NGKKFKAAQTGGPSGGCIPAEH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 409 -FDVPIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRVGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ KG A ++D L E+ +++ ++CALG A P+ + FR I Sbjct: 468 MLEILEKITKGQATMADLDKLEELCYHLKSNSLCALGQTAPNPVLSTLHYFRDEYIAHIV 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|190571396|ref|YP_001975754.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018795|ref|ZP_03334603.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357668|emb|CAQ55112.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995746|gb|EEB56386.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 417 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 265/417 (63%), Positives = 319/417 (76%), Gaps = 3/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IF NL G + L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFINLNGKETPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPKNP--LKAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGRAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I+ ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KVFCISGHVNNPCNVEEELGISLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 R+M R+V G + E+D L +++ IEG TICALGDAAAWP+QGLI++FR +IEERI Sbjct: 359 RIMRRMVAGNIKPGEVDKLLDLTTQIEGHTICALGDAAAWPVQGLIRHFRHIIEERI 415 >gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] Length = 600 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 154/424 (36%), Positives = 243/424 (57%), Gaps = 6/424 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + + N + +++ + + G ++ + K L+ + II + SGLRGRGGAGF Sbjct: 112 FAKQKKIVLENSGYIDPENIDEYIQAGGYEALKKALKMDPEEIIEIITKSGLRGRGGAGF 171 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F + D Y++ NADE +PG DR+++ +PH +IEG +I ++AIGA Sbjct: 172 PTGLKWKFTRQAPGD-EKYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 230 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIYVR E+ L+ A+ + G LG N G+ DI++ GAGA++CGEETAL+ Sbjct: 231 GFIYVRAEYPLAIRRLKIALKQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALI 290 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G PR +PP+PA GL+G PT +NNVE+ A VP I+R G Y+ G E ++GT Sbjct: 291 ASIEGKRGMPRPRPPYPAQKGLWGKPTNINNVETWANVPWIIRHGWEAYASLGTEKSKGT 350 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F++SG + + VE M IT E++ + GG + G + AV GG S C+P + Sbjct: 351 KVFALSGKIKHGGNVEVPMGITLREILYEIGGGTKTG-KRIKAVQLGGPSGGCIPEE-LF 408 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + G+ +G+ ++VMD T ++ F ESCG+CT CR GT M Sbjct: 409 DTPVDYESVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMW 468 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++R +G A + +++ L ++ ++ ++C LG A P+ ++ FR E I+ Sbjct: 469 EILDRFTRGEATEEDLEKLERLAYQVKAGSLCGLGQTAPNPVLTTLRYFREEYIEHIN-- 526 Query: 420 HRCN 423 RC Sbjct: 527 GRCP 530 >gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] Length = 595 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + +++ + + ++ + +L + +I + SGLRGRGGA Sbjct: 109 FYKKQHRVALRNCGVINPENIEEYIGTRGYEALGTVLTTMKPEEVIQVILDSGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 169 GFPTGLKWKFAAANEAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+ + GLLG N + G+D DI + GAGA++CGEETA Sbjct: 228 SQGYIYVRAEYPIAVERLKIAIGQAREYGLLGKNIFESGFDFDIDIRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE++A +P I+ G W+S G E ++ Sbjct: 288 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQIILNGPEWFSSMGTEKSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M T E++E+ GGI A GG S C+PA Sbjct: 348 GTKVFALGGKVKNTGLVEIPMGTTLREIVEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 407 -FDVPIDYDNLIAIGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCAPCRIGTRR 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G ++D L +++ +++ ++CALG A P+ ++ F+ I Sbjct: 466 MLEILEKITNGQGTMEDLDKLEDLAAHLKSNSLCALGQTAPNPVLSTLRYFKDEYIAHIV 525 Query: 418 QYHRCN 423 +C Sbjct: 526 D-KKCP 530 >gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 596 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + ++++ + + K+L E + +I+E+K SGLRGRGG Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVISEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR ++ +PH+++E IA +AIGA Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W+S G E ++ Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+C+PCR GT Sbjct: 408 L-DTPIDYDSLLSIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ G ++ +I+ L ++ +I+ ++C LG A P+ ++ FR E I Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTLRYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|116202325|ref|XP_001226974.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Chaetomium globosum CBS 148.51] gi|88177565|gb|EAQ85033.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Chaetomium globosum CBS 148.51] Length = 495 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 264/421 (62%), Positives = 325/421 (77%), Gaps = 4/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWII EVKASGLRGRGGAGF Sbjct: 52 LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 111 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KW + ++P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A A Sbjct: 112 SGLKWDW---DKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNASAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEFI E LQ A++E YA GL+G N+ GYD D+ VH G GAY+CGEET+L+E Sbjct: 169 YIYIRGEFIEEAAVLQNAINEAYADGLIGKNACNSGYDFDVYVHRGGGAYVCGEETSLIE 228 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+GTK Sbjct: 229 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQGTK 288 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHVN P TVEE MSI ELI+KHCGG+RGGWDNL AVIPGGSS P LP Sbjct: 289 LYCISGHVNNPATVEEEMSIPLRELIDKHCGGVRGGWDNLQAVIPGGSSTPILPKSVCDD 348 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W + Sbjct: 349 QLMDFDALKDSQSGLGTAAVIVMDKSADVVRAISRLSHFYRHESCGQCTPCREGSKWTEQ 408 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Q+ Sbjct: 409 IMQRFEKGLGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQQFA 468 Query: 421 R 421 + Sbjct: 469 K 469 >gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] Length = 595 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + +++ ++R + ++K+L E D +I E+K SGLRGRGGA Sbjct: 109 FYQKQFRVVLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKRSGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW F +V SD Y+V NADE +PG DR ++ +PH+++E +IA +GA Sbjct: 169 GFPTWRKWLFTKQVESDM-KYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IYVR E+ L A+++ GLLG + G+ DI + GAGA++CGEETA Sbjct: 228 HKGYIYVRAEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G PR +PPFPA GL+G PT +NNVE++A +P I+ RG W++ G E ++ Sbjct: 288 LLASIEGSRGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M T +++ GGI AV GG S +P Sbjct: 348 GTKVFALTGKVNNSGLVEVPMGTTLRDIVFNIGGGIP-NGKKFKAVQTGGPSGGVIPEEY 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L+++GS +G+ +IVMD ++ F ESCG+C PCR G Sbjct: 407 L-DTPIDYENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRK 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++R+ KG +ID + E+S ++ ++C LG A P+ + F I Sbjct: 466 LYNILDRISKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYFEDEYRAHIV 525 Query: 418 QYHRCN 423 + RC Sbjct: 526 E-KRCP 530 >gi|154332191|ref|XP_001561912.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059233|emb|CAM36932.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] Length = 481 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 271/424 (63%), Positives = 327/424 (77%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLY G ++ + RG W IL KG DW++NE+KASGLRGRGGAGF Sbjct: 20 LRDQDRIFTNLYEDFGTGINAAERRGDWYRTKDILLKGHDWVVNEIKASGLRGRGGAGFP 79 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK DRP Y+VVN DESEPGTCKDR+IMRHEPH L+EG ++A FA+ A Sbjct: 80 SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKLVEGALVAGFAMRARY 139 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E S+ A+ E Y G LG N+ G+D D+ + GAGAYICGEETA++ Sbjct: 140 GYIYIRGEFYNEWRSVDKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG W++ FGR+ N GT Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+H GG+RGGWDNLL VIPGGSS P +P Sbjct: 260 KLFCISGHVNRPCTVEEEMSIPLQELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+K EI L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERID++ Sbjct: 380 KMMKRFVHGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIDRF 439 Query: 420 HRCN 423 N Sbjct: 440 WEAN 443 >gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum] Length = 596 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + ++++ + + K+L E + +INE+K SGLRGRGG Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVINEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR ++ +PH+++E IA +AIGA Sbjct: 170 GFPTGIKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W++ G E ++ Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+C+PCR GT Sbjct: 408 L-DTPIDYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ G ++ +I+ L ++ +I+ ++C LG A P+ I+ FR E I Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTIRYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] Length = 596 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + ++++ + + K+L E + +I E+K SGLRGRGG Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEQVIAEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR ++ +PH+++E IA +AIGA Sbjct: 170 GFPTGIKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W++ G E ++ Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALGGKINNTGLVEVPMGTTLREIIFEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+C+PCR GT Sbjct: 408 L-DTPIDYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ G ++ +I+ L ++ +I+ +C LG A P+ IK FR E I Sbjct: 467 MLELLNKITSGKGEEGDIEKLEALANSIKASALCGLGQTAPNPVLSTIKYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 616 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + +++ + ++ + + +L E +I VK SGLRGRGGA Sbjct: 130 FFNKQMRVALRNCGLIDPENIDEYIAFDGYKALAAVLSEMSPSDVIQTVKTSGLRGRGGA 189 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KW F K ++ Y+ NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 190 GFSTGTKWEFASKNEAE-RKYVCCNADEGDPGAFMDRSILEGDPHSVIEAMAIAGYAIGS 248 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ L+ A+ + GLLG N G+D D+ + GAGA++CGEETA Sbjct: 249 NQGYIYVRAEYPIAVHRLKIAISQARNYGLLGRNILDSGFDFDVDIRLGAGAFVCGEETA 308 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR++PPFPA GL+ PT +NNVE++A V IL GA W++ G ++ Sbjct: 309 LMASIEGKRGEPRVRPPFPAEKGLWQEPTILNNVETLANVAPILLNGAEWFADLGTLKSK 368 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+I G + VE M T E++ + GGI GG A GG S C+PA Sbjct: 369 GTKVFAIGGKIANTGLVEIPMGTTLREIVYEIGGGIPGG-KAFKAAQTGGPSGGCIPAKH 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A +DY+ L E+GS +G+ +IVMD T ++ F ESCG+CTPCR GT Sbjct: 428 I-DAPIDYESLIELGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRVGTRM 486 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++++ +G ++++D L ++ I ++CALG A P+ +K FR I Sbjct: 487 MYDILDKITQGNGTEKDLDELERYARVITKTSLCALGQTAPNPVLSTLKYFREEYIAHIK 546 Query: 418 QYHRCN 423 + RC Sbjct: 547 E-KRCP 551 >gi|50424275|ref|XP_460724.1| DEHA2F08360p [Debaryomyces hansenii CBS767] gi|49656393|emb|CAG89064.1| DEHA2F08360p [Debaryomyces hansenii] Length = 487 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+Y G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 32 LKDQDRIFQNVYNKYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 92 SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 151 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 152 TAAYIYIRGEFYNEAVILQQAINEAYKEGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 211 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG W++ FGR+NN Sbjct: 212 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRKNNT 271 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIPGG SVP +P Sbjct: 272 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGCSVPVMPKSV 331 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 MDYD L+++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W Sbjct: 332 CDDIAMDYDALRDVGSGLGTAAVIVMNKETDMIRAIQRFAAFYKHESCGQCTPCREGTTW 391 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++M+R VKG A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRPL+ +RI Sbjct: 392 LQKMMDRFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPLMVDRIK 451 Query: 418 QYHR 421 QY + Sbjct: 452 QYEQ 455 >gi|50547327|ref|XP_501133.1| YALI0B20372p [Yarrowia lipolytica] gi|7684614|gb|AAF65194.2|AF197536_1 nucleotide-binding respiratory complex I subunit [Yarrowia lipolytica] gi|6689650|emb|CAB65520.1| NUBM protein [Yarrowia lipolytica] gi|49646999|emb|CAG83386.1| YALI0B20372p [Yarrowia lipolytica] Length = 488 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 262/423 (61%), Positives = 328/423 (77%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G L+ + +G W +++ KG WII+E+K SGLRGRGGAGF Sbjct: 34 LKDQDRIFQNLYDNYGWDLASARKQGDWYKTKELILKGDTWIIDEIKKSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 94 SGLKWSFMNPPGWEKNEGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNA 153 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA+GL+G ++ GYD D+ +H G GAY+CGEET+ Sbjct: 154 TAAYIYIRGEFYNEAAVLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETS 213 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG W++ FGRE N Sbjct: 214 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNS 273 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISG+VN PCTVEE MSI EL+EKHCGGI+GGWDNLL VIPGG SVP LP Sbjct: 274 GTKLFCISGNVNEPCTVEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNI 333 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK++ SGLGTAAVIV+++ D+I+AI R + FYKHESCGQCTPCREGT W Sbjct: 334 CEDVLMDFDALKDVQSGLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTW 393 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++ M+R G A++REID+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ Sbjct: 394 LLKAMDRFRTGQAKEREIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMK 453 Query: 418 QYH 420 ++H Sbjct: 454 KFH 456 >gi|255947866|ref|XP_002564700.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591717|emb|CAP97960.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255] Length = 495 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 275/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L SM G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 46 LKDQDRIFTNLYGHHGADLKSSMKYGDWYRTKDIISKGDDWLISEIKASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEET+ Sbjct: 166 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGSGYDFDVYIHRGMGAYICGEETS 225 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN P TVEE MSI+ ELIEKHCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 286 GTKLFCISGHVNNPVTVEEEMSISLRELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKTV 345 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 346 ADNQLMDFDALKDSQTGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++M+RL G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 406 TMQMMQRLETGNAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465 Query: 418 QYHR 421 QY + Sbjct: 466 QYEK 469 >gi|42520789|ref|NP_966704.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410529|gb|AAS14638.1| NADH dehydrogenase I, F subunit, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 417 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414 >gi|301111442|ref|XP_002904800.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Phytophthora infestans T30-4] gi|262095130|gb|EEY53182.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Phytophthora infestans T30-4] Length = 498 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 265/419 (63%), Positives = 318/419 (75%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG + ++ RG W +L G DWI+ E+K SGLRGRGGAGF Sbjct: 40 LKDEDRIFTNVYGEDTWRVDGAVRRGDWHRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFP 99 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP +LVVNADESEPGTCKDR+IMR +PH L+EGC+IA FA+ A A Sbjct: 100 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLIAGFAMRARAA 159 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGEF E LQ A+ E Y G LG N+ GYD D+ +H GAGAYICGEET LLE Sbjct: 160 YVYIRGEFFNEALILQEAIHEAYQRGFLGRNACGSGYDFDVYLHRGAGAYICGEETGLLE 219 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++ GR+NN GTK Sbjct: 220 SLEGRQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNHGTK 279 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI +LIE+HCGG+RGGWDNL A IPGGSSVP L + Sbjct: 280 LFCISGHVNNPCTVEEEMSIPLRDLIERHCGGVRGGWDNLQACIPGGSSVPVLDEELCQD 339 Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LK+ GSGLGTAAV + D+S D++ AI R S FY HESCGQCTPCREGTGWM Sbjct: 340 IMMDYDDLKQRGGSGLGTAAVTIFDKSVDMVGAIRRYSHFYTHESCGQCTPCREGTGWME 399 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +V+ R+ G A+ EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+ + ERI+ Sbjct: 400 KVLTRMETGDAELEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKLVERIED 458 >gi|254569928|ref|XP_002492074.1| hypothetical protein [Pichia pastoris GS115] gi|238031871|emb|CAY69794.1| hypothetical protein PAS_chr2-2_0462 [Pichia pastoris GS115] gi|308152238|emb|CBI83538.1| NUBM (51 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] gi|328351436|emb|CCA37835.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Pichia pastoris CBS 7435] Length = 473 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 271/420 (64%), Positives = 332/420 (79%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+Y G+ L S RG W +I+ KG +W+INE+KASGLRGRGGAGF Sbjct: 19 LKDSDRIFQNVYSKYGEDLKSSQQRGDWYKTKEIILKGHEWLINELKASGLRGRGGAGFP 78 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMP + P YLVVNADE EPGTCKDR+I+R EPH L+EGC++A A+ A A Sbjct: 79 SGLKYSFMPPNPNREPQYLVVNADEGEPGTCKDREIIRKEPHKLVEGCLLAGRAMNATAA 138 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A++E Y +GLLG N+ GYD D+ +H G GAYICGEETAL+E Sbjct: 139 YIYIRGEFYNEAVALQTAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYICGEETALIE 198 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA VGL+G PTTV NVE++AV PTI RR +W++ FGR+ N+GTK Sbjct: 199 SIEGKAGKPRLKPPFPAGVGLFGRPTTVTNVETVAVTPTIFRRSGAWFASFGRDRNQGTK 258 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEESMSI EL+EKHCGGI+GGWDNLL V+PGGSSVP +P Sbjct: 259 LFCISGHVNEPCTVEESMSIPLKELLEKHCGGIKGGWDNLLGVVPGGSSVPIMPKHVCED 318 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK++GSGLGTAAVIV+++ TDII+AI R S FYKHESCGQCTPCREGT ++ R Sbjct: 319 VLMDFDALKDVGSGLGTAAVIVLNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTYLQR 378 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M+R V G A+++EIDL+YE+SK IEG TICALGDAAAWP+QGLIK+FRP + ERI QY Sbjct: 379 MMDRFVTGQAKEKEIDLIYELSKEIEGHTICALGDAAAWPVQGLIKSFRPEMVERIKQYE 438 >gi|2499312|sp|Q92406|NDUV1_ASPNG RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; Flags: Precursor gi|1556376|emb|CAA45744.1| 51kDa subunit of NADH:ubiquinone reductase (complex I) [Aspergillus niger] Length = 496 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 270/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 46 LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A++Y+RGEF +E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 166 NAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI+ ++I++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Sbjct: 406 TMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465 Query: 418 QYHR 421 +Y + Sbjct: 466 EYSK 469 >gi|39974413|ref|XP_368597.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] gi|145018439|gb|EDK02718.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] Length = 497 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 269/422 (63%), Positives = 322/422 (76%), Gaps = 4/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L + G W +I+ KG DWII E+KASGLRGRGGAGF Sbjct: 48 LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEIKASGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM D+ P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A A+ A Sbjct: 108 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 167 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E YA GL+G N+ GYD D+ VH G GAY+CGEET+ Sbjct: 168 TAAYIYIRGEFYHEAAVLQGAINEAYADGLIGKNACGSGYDFDVFVHRGGGAYVCGEETS 227 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+ Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 287 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISG VN PCTVEE MSI ELIEKHCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 288 GTKLFCISGQVNNPCTVEEEMSIPMRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 347 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSADVVRAIARLSHFYRHESCGQCTPCREGSKW 407 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M R G + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E+R+ Sbjct: 408 TEQIMHRFEHGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEKRMA 467 Query: 418 QY 419 + Sbjct: 468 DF 469 >gi|190895700|gb|ACE96363.1| esterase/lipase/thioesterase [Populus tremula] gi|190895702|gb|ACE96364.1| esterase/lipase/thioesterase [Populus tremula] gi|190895708|gb|ACE96367.1| esterase/lipase/thioesterase [Populus tremula] gi|190895710|gb|ACE96368.1| esterase/lipase/thioesterase [Populus tremula] gi|190895714|gb|ACE96370.1| esterase/lipase/thioesterase [Populus tremula] gi|190895716|gb|ACE96371.1| esterase/lipase/thioesterase [Populus tremula] gi|190895720|gb|ACE96373.1| esterase/lipase/thioesterase [Populus tremula] gi|190895722|gb|ACE96374.1| esterase/lipase/thioesterase [Populus tremula] gi|190895724|gb|ACE96375.1| esterase/lipase/thioesterase [Populus tremula] gi|190895726|gb|ACE96376.1| esterase/lipase/thioesterase [Populus tremula] gi|190895728|gb|ACE96377.1| esterase/lipase/thioesterase [Populus tremula] gi|190895730|gb|ACE96378.1| esterase/lipase/thioesterase [Populus tremula] gi|190895732|gb|ACE96379.1| esterase/lipase/thioesterase [Populus tremula] gi|190895734|gb|ACE96380.1| esterase/lipase/thioesterase [Populus tremula] gi|190895736|gb|ACE96381.1| esterase/lipase/thioesterase [Populus tremula] gi|190895738|gb|ACE96382.1| esterase/lipase/thioesterase [Populus tremula] gi|190895740|gb|ACE96383.1| esterase/lipase/thioesterase [Populus tremula] gi|190895742|gb|ACE96384.1| esterase/lipase/thioesterase [Populus tremula] gi|190895744|gb|ACE96385.1| esterase/lipase/thioesterase [Populus tremula] gi|190895746|gb|ACE96386.1| esterase/lipase/thioesterase [Populus tremula] gi|190895752|gb|ACE96389.1| esterase/lipase/thioesterase [Populus tremula] gi|190895756|gb|ACE96391.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 279/405 (68%), Positives = 324/405 (80%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408 >gi|99035131|ref|ZP_01314914.1| hypothetical protein Wendoof_01000244 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 417 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFLHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414 >gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2] gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2] Length = 595 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 241/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R N + + + + ++R + + K L E D II E+ ASGLRGRGGA Sbjct: 111 FFASQMFRAMRNKGLIDPEVIDEYIARDGYFALAKALNEMTPDNIIEEMMASGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF GMKW F + D +++ NADE +PG DR ++ +PH ++EG IA+ AI A Sbjct: 171 GFPAGMKWKFAKQAEGD-KKFVLCNADEGDPGAFMDRSLLESDPHAILEGMTIAAKAINA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IY R E+ + L A+ + GLLG + G++ DI V+ GAGA++CGEETA Sbjct: 230 HKGYIYCRSEYPLAIKRLGIAIAQAKDYGLLGEDILGSGFNFDIEVYQGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFPA+ GL+ PT +NNVE++ VP I+ +G WY+ G E ++ Sbjct: 290 LMRSIEGKRGMPRPRPPFPAHKGLWEKPTILNNVETLVNVPQIILKGGEWYASVGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++SG V VE M T L+ GG+ AV GG S C+P Sbjct: 350 GTKVFALSGDVANIGLVEIPMGTTLRTLVYDIGGGVPNKRK-FKAVQLGGPSGGCVPEEY 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + ++G+ +G+ IVMD T ++ F + ESCG+CTPCREGT Sbjct: 409 L-DTPIDYEEIVKVGAIMGSGGAIVMDNHTCMVDMARYFMDFIQDESCGKCTPCREGTKQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E + KG Q +I+ L ++ I ++C LG A P+ ++ FR E I+ Sbjct: 468 MLEILEAICKGKGQSGDIERLETLAHVIRRTSLCGLGQTAPNPVLSTLRYFRDEYEAHIE 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|262277296|ref|ZP_06055089.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium HIMB114] gi|262224399|gb|EEY74858.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium HIMB114] Length = 427 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 263/417 (63%), Positives = 328/417 (78%), Gaps = 2/417 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D DRIF NLYG + +LS++++RG W + +I+ KG++WII++VK S LRGRGGAGF Sbjct: 1 MLKDTDRIFRNLYGDESFNLSNALNRGDWKDTKEIIAKGKEWIIDQVKKSELRGRGGAGF 60 Query: 61 STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TGMKWSF PK +DRPHYLV+NADESEPGTCKDRDI+R+EP LIEG +IA++A+GA Sbjct: 61 PTGMKWSFAPKEPTADRPHYLVINADESEPGTCKDRDILRYEPQKLIEGSLIAAYAVGAK 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+RGE++ E + LQ A+DE Y L+G N+ G+D D+ +H GAGAYICGEETAL Sbjct: 121 TCYVYIRGEYVNEGKVLQQAIDEAYEKNLIGKNAAGSGWDFDMYIHFGAGAYICGEETAL 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG KGQPRLKPPFPA VGLYGCPT VNNVE+IAVVPTILRRG W++ FGR NRG Sbjct: 181 LESLEGNKGQPRLKPPFPALVGLYGCPTIVNNVETIAVVPTILRRGPEWFASFGRPKNRG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISG+V PC VEE MSI ELIE H GG+ GGW NL AVIPGGSS+P LP Sbjct: 241 TKIFCISGNVVNPCNVEEEMSIPLKELIETHAGGVIGGWGNLQAVIPGGSSMPLLPKKVC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +MD+D L E SG+GTA ++V+D+S DI+ I R+S FYKHESCGQCTPCREG+GW+ Sbjct: 301 DNILMDFDALVEAKSGMGTAGIVVIDKSQDIVSCISRISRFYKHESCGQCTPCREGSGWL 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+MER+ +G A+ EID+L EV+K IEG TICA G+A+AWP+QGL+++FR +EE+ Sbjct: 361 WRMMERINRGEAEIHEIDMLLEVTKQIEGHTICAFGEASAWPVQGLLRHFREQMEEK 417 >gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta thermophila DSM 6578] Length = 595 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + +++ ++R + ++K+L E D +I E+K SGLRGRGGA Sbjct: 109 FYQKQFRVVLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKKSGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW F + D Y+V NADE +PG DR ++ +PH+++E +IA + A Sbjct: 169 GFPTWRKWLFTMQAKDD-VKYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVEA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IYVR E+ L A+++ GLLG + G+ DI + GAGA++CGEETA Sbjct: 228 HKGYIYVRAEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G PR +PPFPA GL+G PT +NNVE++A +P I+ RG W++ G E ++ Sbjct: 288 LLASIEGSRGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M T +++ GGI AV GG S +P Sbjct: 348 GTKVFALTGKVNNSGLVEVPMGTTLRDIVFNIGGGIP-NGKKFKAVQTGGPSGGVIPEEY 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L+++GS +G+ +IVMD ++ F ESCG+C PCR G Sbjct: 407 L-DTPIDYENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRK 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++R+ KG +ID + E+S ++ ++C LG A P+ + F I Sbjct: 466 LYNILDRISKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYFEDEYRAHIV 525 Query: 418 QYHRCN 423 + RC Sbjct: 526 E-KRCP 530 >gi|225631349|ref|ZP_03788019.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590954|gb|EEH12166.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 417 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 265/416 (63%), Positives = 317/416 (76%), Gaps = 3/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 1 MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A AI A Sbjct: 61 STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P Sbjct: 239 KIFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQG I++FR +I+ER Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGFIRHFRHVIKER 414 >gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 600 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 157/423 (37%), Positives = 241/423 (56%), Gaps = 5/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61 Q + + + + D + G + + K+L +++EVK+SGLRGRGGAGF Sbjct: 116 RQQKIVLAKCGKINPERIEDYLVLGGYRAMKKVLTIMTPQAVVDEVKSSGLRGRGGAGFP 175 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW Y++ NADE +PG DR I+ PH ++EG +I +A G+ Sbjct: 176 TGTKWEGALHAKIKDKKYVICNADEGDPGAFMDRSILEGNPHEVLEGMIICGYATGSDEG 235 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ L+ A+ + A+G LG+N G++ I + GAGA++CGE TAL+ Sbjct: 236 YIYVRAEYPMAIRRLKIAISQAEAAGYLGNNILNSGFNFHIKIKAGAGAFVCGEGTALMA 295 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G PR K GL+ PTT+NNVE+ A +PTI+ +GA WYS G +N++GTK Sbjct: 296 SIEGNRGMPRFKASRSTEKGLWDKPTTMNNVETFANIPTIIVKGALWYSSIGTDNSKGTK 355 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS++G V VE M + ++I GGI AV GG S C+PA + Sbjct: 356 VFSLTGKVVNTGLVEVPMGTSLRQIIFDIGGGIPNNRK-FKAVQSGGPSGGCIPAKYL-D 413 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L ++G+ +G+ ++VMD +T ++ F K+ESCG+CTPCREGT M+ Sbjct: 414 LPVDYNSLGKVGAMMGSGGLVVMDDTTCMVDVARFFLNFTKNESCGKCTPCREGTLRMLE 473 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G + ++ID L ++K I G ++C LG +A +P+ ++ FR EE I Sbjct: 474 ILTRICEGKGEPKDIDDLERLAKVICGTSLCGLGQSAPFPVLSTLRYFRHEYEEHIYN-K 532 Query: 421 RCN 423 RC Sbjct: 533 RCP 535 >gi|190895712|gb|ACE96369.1| esterase/lipase/thioesterase [Populus tremula] gi|190895718|gb|ACE96372.1| esterase/lipase/thioesterase [Populus tremula] gi|190895748|gb|ACE96387.1| esterase/lipase/thioesterase [Populus tremula] gi|190895754|gb|ACE96390.1| esterase/lipase/thioesterase [Populus tremula] gi|190895758|gb|ACE96392.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 279/405 (68%), Positives = 325/405 (80%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK+ RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408 >gi|316978440|gb|EFV61427.1| putative NADH oxidoreductase, F subunit [Trichinella spiralis] Length = 709 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 263/427 (61%), Positives = 318/427 (74%), Gaps = 22/427 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+ SGLRGRGGAGF Sbjct: 281 LKDEDRIFTNLYGRHDWKLKGALSRGDWYKTKEILLKGEDWIVKEITKSGLRGRGGAGFP 340 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 341 AGLKWSFMNKPYDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 400 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+R +GL+G N+ GYD D+ VH GAGAYICGEETALLE Sbjct: 401 YIYIR-------------------AGLIGRNACGTGYDFDVFVHRGAGAYICGEETALLE 441 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 442 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVSPTICRRGGSWFASFGRERNHGTK 501 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV+ PCTVEE MSI ELIE+H GG+ GGWDNLLAVIPGGSS P +P Sbjct: 502 LFCISGHVHTPCTVEEEMSIPLKELIERHGGGVIGGWDNLLAVIPGGSSTPVIPKQICND 561 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L E +GLGTAAVIVM++ TDI+KAI RLS+FYKHESCGQCTPCREG W+ + Sbjct: 562 VLMDFDALIEAKTGLGTAAVIVMNKQTDIVKAIARLSLFYKHESCGQCTPCREGCSWLNK 621 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M R V G + E+D+++E+SK +EG TICAL DAAAWP+QGL+++FRP +E R+ ++ Sbjct: 622 MMWRFVDGNSVPEELDMIWELSKQLEGHTICALADAAAWPVQGLVRHFRPELEARMKKFE 681 Query: 421 --RCNFQ 425 R N Q Sbjct: 682 TLRKNIQ 688 >gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] Length = 596 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 172/426 (40%), Positives = 250/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + +S+ + ++ G +D + K L E + ++ EVK SGLRGRGG Sbjct: 111 FYKKQMRLVLANCGHINPESIEEYIAVGGYDALAKALTEMTPEQVVAEVKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F D Y+V NADE +PG DR ++ +PH +IEG I +AIGA Sbjct: 171 GFPTGLKWEFTRNAKGD-KKYVVCNADEGDPGAFMDRSVLEGDPHRVIEGMAICGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+ + GLLG N G++ + + GAGA++CGEETA Sbjct: 230 DEGYVYVRAEYPLAIKRLKLAIKQAEDMGLLGDNILGTGFNFHLKIKEGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR +PPFPA GL+G PT +NNVE+ A VP I+ RGA WY+ G E ++ Sbjct: 290 LLASIEGKRGMPRPRPPFPAISGLWGKPTNINNVETFANVPQIITRGADWYASIGTERSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N E M IT E+I GGI GG AV GG S CLP Sbjct: 350 GTKVFALTGRINNTGLAEVPMGITMREIIYDIGGGIPGGRK-FKAVQIGGPSGGCLPEE- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT Sbjct: 408 LLDLPIDYDSLTQAGAMMGSGGLVVMDETTCMVDVAKFFLNFTQSESCGKCTPCREGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G + +I LL +++KNI+ +C LG A P+ ++ FR E I+ Sbjct: 468 MLEILTRITEGKGRPDDIALLEDLAKNIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIN 527 Query: 418 QYHRCN 423 RC Sbjct: 528 D-KRCP 532 >gi|169771479|ref|XP_001820209.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40] gi|238485950|ref|XP_002374213.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus flavus NRRL3357] gi|83768068|dbj|BAE58207.1| unnamed protein product [Aspergillus oryzae] gi|220699092|gb|EED55431.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus flavus NRRL3357] Length = 496 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 265/424 (62%), Positives = 330/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG G L +M G W I+ KG DW+I+E+KASGLRGRGGAGF Sbjct: 47 LQDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGDDWLISELKASGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+K+SFM D RP YLVVNADE EPGTCKDR+IMR +P LIEGC++ A+ A Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEET+ Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 286 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN P TVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P +P Sbjct: 287 GTKLYCISGHVNNPVTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W Sbjct: 347 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSSFYRHESCGQCTPCREGSKW 406 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++M+R+ G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E +I Sbjct: 407 TQQIMQRMETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEAKIR 466 Query: 418 QYHR 421 ++ + Sbjct: 467 EHAQ 470 >gi|145498931|ref|XP_001435452.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402584|emb|CAK68055.1| unnamed protein product [Paramecium tetraurelia] Length = 462 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 266/407 (65%), Positives = 315/407 (77%), Gaps = 2/407 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 23 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D YLV+NADESEPGTCKDR+I+RH+PH L+EG + FA+ A Sbjct: 83 SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+ Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+ Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 429 >gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] Length = 594 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 248/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I N + ++ D +S + ++K+L E + +I E+K SGLRGRGG Sbjct: 108 FFKGQKKIALRNTGVIDPDNIEDYLSHDGYKALEKVLTEMSPEEVIEEIKESGLRGRGGG 167 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + + Y+V NADE +PG DR I+ +PH++IE IA +A+GA Sbjct: 168 GFPTGLKWQFTAQSEGE-QKYIVCNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAVGA 226 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + ++ A+ + +G +G+N + D+ + GAGA++CGEETA Sbjct: 227 NQGYVYVRAEYPLAVKRMEKAISDARENGFIGNNIFDTNFKFDLEIRVGAGAFVCGEETA 286 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+PR KPPFPA GL+G PT +NNVE+ A +P I+ +GA W++ G E ++ Sbjct: 287 LMASIEGERGEPRPKPPFPAQSGLWGKPTLINNVETYANIPVIILKGAKWFNHIGTEKSK 346 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I CGGI G A GG S C+P Sbjct: 347 GTKVFAVAGDINTTGLVEVPMGTTLREIIFDICGGIPEG-KKFKAAQTGGPSGGCIPREH 405 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MDYD L E+GS +G+ +IVMD +T ++ F + ESCG+C PCR GT Sbjct: 406 L-DISMDYDSLIEIGSMMGSGGLIVMDENTCMVDVARFFLDFTQDESCGKCVPCRIGTKR 464 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ KG + +I+ L ++ K I+ +C LG A P+ IK FR E I Sbjct: 465 MLEILERITKGQGEPGDIEKLEKLGKYIKENALCGLGQTAPNPVLSTIKYFRDEYEAHIK 524 Query: 418 QYHRCN 423 C Sbjct: 525 D-KNCP 529 >gi|58584731|ref|YP_198304.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419047|gb|AAW71062.1| NADH:ubiquinone oxidoreductase, NADH-binding, chain F [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 424 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 263/416 (63%), Positives = 322/416 (77%), Gaps = 2/416 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +QD+IFTNL G + L + RG W ++L+ G + II+EV+ SGLRGRGGAGFS Sbjct: 1 MKEQDKIFTNLSGKETPLLKGAKKRGSWQKTKELLDLGSEKIIDEVRKSGLRGRGGAGFS 60 Query: 62 TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK S ++P YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A Sbjct: 61 TGLKWSFMPKNPSKEQPTYLVVNADESEPGTCKDRDILRYEPHKLLEGVLLASRAISASV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y GL+G N+ K YD+++ +H GAGAYICGEETA L Sbjct: 121 AYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSSYDLNVFIHRGAGAYICGEETAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 181 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILYRGGEWFASLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F +SGHVN PC VEE + I ELIE++ GG+RGGWDNLLAVIPGGSSV +P Sbjct: 241 KIFCVSGHVNNPCNVEEELGIPLRELIEEYAGGVRGGWDNLLAVIPGGSSVSLIPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 IIKMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R+M+R+V G + EID L +++ IEG TICALGDAAAWPIQGLI++FR +IEER Sbjct: 361 RIMKRMVTGNIKHGEIDKLLDLTTQIEGNTICALGDAAAWPIQGLIRHFRHVIEER 416 >gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 590 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 163/425 (38%), Positives = 252/425 (59%), Gaps = 7/425 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 + Q RI N + + + +++SRG ++ K + E D +I+EV SGLRGRGGAG Sbjct: 105 MAKQVRIVLRNCGIIDPEKIDEAISRGAYEAFSKAVKEMSPDEVIDEVYRSGLRGRGGAG 164 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F + + P Y++ NADE +PG DR ++ +PHT+IEG I ++A+GA Sbjct: 165 FPTGLKWKFTRQAKGE-PKYVICNADEGDPGAFMDRSVLEGDPHTVIEGMAICAYAVGAS 223 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + L A+D+ G LG N G++ DI + GAGA++CGEETAL Sbjct: 224 HGYIYCRAEYPLAIKRLNIALDQARERGFLGDNVFGSGFNFDIEIKEGAGAFVCGEETAL 283 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR +PPFPA G++G PT +NNVE+ A VP I+R GAS +S FG E ++G Sbjct: 284 IASIEGKRGMPRPRPPFPAESGVWGKPTNINNVETYANVPWIIRHGASEFSAFGTEKSKG 343 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V +E M + E+I GGI G + + AV GG S C+P + Sbjct: 344 TKVFALAGKVAKGGLIEIPMGMPIREVIYDIGGGIADGKE-IKAVQMGGPSGGCIP-SWL 401 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + G+ +G+ +IV+D ++ ++ F + ESCG+C CR GT M Sbjct: 402 LDTPVDYESITATGAIMGSGGMIVLDETSCVVDVAKFFLNFTQRESCGKCPFCRIGTKRM 461 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ER+ G + ++DLLYE++ ++ ++C LG A P+ +K FR E + Sbjct: 462 LEILERISNGEGKMEDLDLLYELALQVKEGSLCGLGQTAPNPVLTTLKYFREEYETHVKD 521 Query: 419 YHRCN 423 +C Sbjct: 522 -KKCP 525 >gi|190895704|gb|ACE96365.1| esterase/lipase/thioesterase [Populus tremula] gi|190895706|gb|ACE96366.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLE K+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEVKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408 >gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] Length = 596 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q RI N+ + ++ + ++R + + K+L E + +I EVK SGLRGRGGA Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMTPEEVIEEVKKSGLRGRGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K + Y+V NADE +PG DR IM +PH++IEG +I +AIGA Sbjct: 170 GFPTGLKWELGKKAKGE-EKYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+Y+R E+ + L AA+++ GLLG N + DI + GAGA++CGEETA Sbjct: 229 KKGFVYIRAEYPLAIKRLTAALEQAREYGLLGENILGTNFSFDIEIRIGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+ G+ W+S FG E ++ Sbjct: 289 LIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGSEWFSKFGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M IT E++ G G AV GG + C+PA Sbjct: 349 GTKVFALAGKINMTGLIEVPMGITLREVVYDIGG-GIPGGKKFKAVQIGGPAGGCIPAEY 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + +G+ +G+ +IVMD ++ F + ESCG+C PCR GT Sbjct: 408 L-DTPIDYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ KG + ++ L +++ + ++C LG A P+ +K FR I Sbjct: 467 MLEILDKITKGEGTEEDLVELEQLAYTVRNTSLCGLGKGAPNPVLTTLKYFRDEYLAHIR 526 Query: 418 QYHRCN 423 +C Sbjct: 527 D-KKCP 531 >gi|51947511|gb|AAU14240.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus ovalis] Length = 474 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 256/420 (60%), Positives = 327/420 (77%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++DQDRIF+NLY Q ++ ++ RG W IL +D++I+E+K SGLRGRGGAGF Sbjct: 34 ISDQDRIFSNLYKDQDPFINGALKRGDWYRTKDILSCPQDFVIDEIKKSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMPK RP YLVVNADESEP TCKDR+IMRH+PH L+EG +I +A+ A A Sbjct: 94 SGLKYSFMPKKSDGRPSYLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRAKAA 153 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGEF E + L+ AV E Y G +G N+ GYD DI VH GAGAY+CGEET++L Sbjct: 154 YVYIRGEFWHEAQQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYVCGEETSMLS 213 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG G+PR+KPP+PA GLYGCPTTV NVE+++ VPTI+RRG SW++ FGR+NN GTK Sbjct: 214 SIEGVVGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGSWFASFGRKNNHGTK 273 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGH+N PCTVE+ MSI+ ELIE+H GG+RGGWDNLL VIPGGSS P + Sbjct: 274 LYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 333 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L E GS GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ Sbjct: 334 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 393 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ G A EID LYE++K IEG TICALG+AAAWP+QGLIK++RP++E+R+D+YH Sbjct: 394 MLERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRPVMEDRMDKYH 453 >gi|149245198|ref|XP_001527133.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus NRRL YB-4239] gi|146449527|gb|EDK43783.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus NRRL YB-4239] Length = 491 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 265/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 35 LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 95 SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAY+CGEETA Sbjct: 155 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYVCGEETA 214 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG W+ GRE N Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGEWFDSLGRERNS 274 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI+GGWDNLL VIPGGSSVP +P Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPVMPKET 334 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R + FYKHESCGQCTPCREGT W Sbjct: 335 CDTVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFAHFYKHESCGQCTPCREGTTW 394 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R G A +REID+++E++K IEG TICALGDAAAWPIQGLIK+F+P++ +RI+ Sbjct: 395 LQRMMDRFQTGQATEREIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFKPVMIDRIN 454 Query: 418 QYHR 421 +Y + Sbjct: 455 EYQK 458 >gi|190895750|gb|ACE96388.1| esterase/lipase/thioesterase [Populus tremula] Length = 408 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF Sbjct: 4 LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPK RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 64 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLE Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 +MERL G A+ EID+L EV+K IEG TICALGDAAA P+QGLI Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAARPVQGLI 408 >gi|241951346|ref|XP_002418395.1| NADH dehydrogenase complex I subunit, putative [Candida dubliniensis CD36] gi|223641734|emb|CAX43695.1| NADH dehydrogenase complex I subunit, putative [Candida dubliniensis CD36] Length = 491 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 35 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 95 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAYICGEETA Sbjct: 155 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 214 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG W++ FGRE N Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 274 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI GGWDNLL VIPGGSSVP +P Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 334 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 335 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 394 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R G A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI Sbjct: 395 LQRMMDRFYTGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 454 Query: 418 QYHR 421 ++ + Sbjct: 455 EFQQ 458 >gi|68171485|ref|ZP_00544869.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88658598|ref|YP_507360.1| NADH dehydrogenase I subunit F [Ehrlichia chaffeensis str. Arkansas] gi|67999091|gb|EAM85758.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88600055|gb|ABD45524.1| NADH dehydrogenase I, F subunit [Ehrlichia chaffeensis str. Arkansas] Length = 427 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 268/422 (63%), Positives = 323/422 (76%), Gaps = 2/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D D++FTNL G L + SRG W N+ +IL G + II E+K SGLRGRGGAGF Sbjct: 1 MLKDSDKVFTNLSGQYSPFLRSAKSRGIWSNILEILNLGPEHIIQEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK +P YL++NADESEPGTCKDRDI+R++PH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLIINADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A++E Y + L+G N+ GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLVLSKALEEAYKAKLIGKNACNSGYDLDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V I+RRG+ W++ GRENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGRENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTVNMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+M+++VKG A IDLL ++ +EG TICALGDAAAWPIQGLI++FR +IE+RI Sbjct: 361 WRIMKKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRNVIEDRIRD 420 Query: 419 YH 420 Y+ Sbjct: 421 YN 422 >gi|145538866|ref|XP_001455133.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422921|emb|CAK87736.1| unnamed protein product [Paramecium tetraurelia] Length = 463 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 266/407 (65%), Positives = 315/407 (77%), Gaps = 2/407 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 24 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 83 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D YLV+NADESEPGTCKDR+I+RH+PH L+EG + FA+ A Sbjct: 84 SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 143 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+ Sbjct: 144 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 203 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT Sbjct: 204 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 263 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 264 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 323 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 324 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 383 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+ Sbjct: 384 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 430 >gi|255724736|ref|XP_002547297.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] gi|15425872|gb|AAK97627.1|AF399714_1 NADH dehydrogenase complex I 51 kDa subunit [Candida tropicalis] gi|240135188|gb|EER34742.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 489 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 267/424 (62%), Positives = 328/424 (77%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 33 LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 92 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 93 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 152 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD D+ +H G GAY+CGEETA Sbjct: 153 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYVCGEETA 212 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG W++ FGRE N Sbjct: 213 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 272 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI+GGWDNLL VIPGGSSVP +P Sbjct: 273 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPIMPKET 332 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 333 CDHVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 392 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R KG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI Sbjct: 393 LQRMMDRFYKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 452 Query: 418 QYHR 421 Q+ Sbjct: 453 QFQE 456 >gi|307105658|gb|EFN53906.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlorella variabilis] Length = 444 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 276/409 (67%), Positives = 330/409 (80%), Gaps = 1/409 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTN+YG + + RG W I+ KG DW+++++K SGLRGRGGAGF Sbjct: 8 LADKDRIFTNIYGRHDPFIKGAEKRGDWYRTKDIVSKGSDWVVDQMKKSGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA + A Sbjct: 68 SGLKWSFMPKVSDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVGMRARAG 127 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF+ ER+++ A+DE YA G LG N+ GYD D+ VH GAGAYICGEETAL+E Sbjct: 128 YIYIRGEFVEERKAVMRAIDEAYAKGYLGRNACGSGYDFDLNVHWGAGAYICGEETALIE 187 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG W++GFGR+NN GTK Sbjct: 188 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNHGTK 247 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN P TVEE MSI+ ELIE+H GG+RGGWDNLLA+IPGGSSVP LP Q Sbjct: 248 LFAISGHVNRPVTVEEEMSISLKELIERHAGGVRGGWDNLLAIIPGGSSVPMLPKAQCED 307 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LKE SGLGTAAV+VMD+STD I+AI RLS FYKHESCGQCTPCREGTGW+ Sbjct: 308 VLMDFDALKERQSGLGTAAVMVMDKSTDPIEAIARLSYFYKHESCGQCTPCREGTGWLYD 367 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 +M R+ KG A+ EID+L+E++K IEG TICALGDAAAWP+QGLI++FR Sbjct: 368 IMTRMKKGDARVEEIDMLWELTKQIEGHTICALGDAAAWPVQGLIRHFR 416 >gi|313238308|emb|CBY13392.1| unnamed protein product [Oikopleura dioica] gi|313246735|emb|CBY35608.1| unnamed protein product [Oikopleura dioica] Length = 458 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 270/423 (63%), Positives = 320/423 (75%), Gaps = 3/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + DQDRIFTNLYG S+ + +RG W +IL KG DWI E+K SGLRGRGGAGF Sbjct: 25 MKDQDRIFTNLYGFHDFSIKGAEARGDWYKTKEILLKGADWIQQEMKDSGLRGRGGAGFP 84 Query: 62 TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFM +D RP YLVVNADE EPGTCKDRDIMRH+PH LIEGC++A +A+GA Sbjct: 85 TGLKWSFMNVPVTDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLIEGCLVAGYAMGATA 144 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IYVRGEF E +L AV E YA+G LG N+ GYD D+ V GAGAY+CGEETAL+ Sbjct: 145 AYIYVRGEFYNETSNLMYAVREAYAAGYLGQNACGTGYDFDVYVQRGAGAYVCGEETALI 204 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPA +G +GCPTTVNNVE+IAV PTI RRGA W+S FGRE N GT Sbjct: 205 ESLEGKQGKPRLKPPFPAAIGAFGCPTTVNNVETIAVAPTICRRGAEWFSSFGRERNTGT 264 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISG+VN PCTVEE+MSI ELIEKH GG+RGGWDNLLAVIPGGSS P LP Sbjct: 265 KLFNISGNVNTPCTVEETMSIPMRELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 324 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L SGLGTAA+IVM++ D ++ IWRL FYKHESCGQCTPCREG WM Sbjct: 325 DIMMDFDALAAAPSGLGTAALIVMNKDDDPVECIWRLMEFYKHESCGQCTPCREGVSWMN 384 Query: 360 RVMERLVKGIAQ-KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++R G ++ EI+ L+E+SK +EG TICAL D AAWP QGLI+ F+P +EER + Sbjct: 385 DILKRWTFGQSRGPEEIEQLWEISKQVEGNTICALADGAAWPAQGLIRWFKPYLEERFAE 444 Query: 419 YHR 421 R Sbjct: 445 DVR 447 >gi|68486372|ref|XP_712921.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|68486437|ref|XP_712889.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|46434308|gb|EAK93721.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|46434343|gb|EAK93755.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida albicans SC5314] gi|238882235|gb|EEQ45873.1| NADH-quinone oxidoreductase chain F [Candida albicans WO-1] Length = 490 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 267/424 (62%), Positives = 326/424 (76%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 34 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A A+ A Sbjct: 94 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 153 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GL+G N+ GYD DI +H G GAYICGEETA Sbjct: 154 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYICGEETA 213 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG W++ FGRE N Sbjct: 214 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNA 273 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF ISGHVN PCTVEE MSI EL+EKHCGGI GGWDNLL VIPGGSSVP +P Sbjct: 274 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 333 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 334 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 393 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R G A ++EID ++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI Sbjct: 394 LQRMMDRFYTGQATEKEIDQIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 453 Query: 418 QYHR 421 ++ + Sbjct: 454 EFQQ 457 >gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] Length = 599 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 154/424 (36%), Positives = 243/424 (57%), Gaps = 7/424 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q +I N + +++ + ++ G ++ + K L + II+ + SGLRGRGGAGF Sbjct: 112 FAKQVKIVLENSGYIDPENIDEYITVGGYEALKKALSMEPEEIIDIIMKSGLRGRGGAGF 171 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F + D Y++ NADE +PG DR+++ +PH +IEG +I ++AIGA Sbjct: 172 PTGLKWKFTREAKGD-EKYIICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 230 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIYVR E+ L+ A+ + G LG N G+ DI + GAGA++CGEETAL+ Sbjct: 231 GFIYVRAEYPLAIRRLRIALKQAKERGFLGENILGSGFSFDIEIKEGAGAFVCGEETALI 290 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G PR +PP+PA GL+G PT +NNVE+ A VP I+R G ++ G E ++GT Sbjct: 291 ASIEGKRGMPRPRPPYPAQKGLFGKPTNINNVETWANVPWIIRHGWKAFASLGTEKSKGT 350 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F++SG + + VE M T E++ GG + G + AV GG S C+P + Sbjct: 351 KVFALSGKIKHGGNVEVPMGTTLREILYDIGGGTKTG-KRIKAVQLGGPSGGCIP-EYLF 408 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + G+ +G+ ++VMD T ++ F ESCG+CT CR GT M+ Sbjct: 409 DTPVDYESVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRVGTKRML 468 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ER +G A K +++ L +++ ++ ++C LG A P+ ++ FR I+ Sbjct: 469 EILERFTEGKATKEDLERLEKLAHQVKAGSLCGLGQTAPNPVLTTLRYFRDEYLAHIE-- 526 Query: 420 HRCN 423 +C Sbjct: 527 GKCP 530 >gi|51947517|gb|AAU14243.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus ovalis] Length = 475 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 255/420 (60%), Positives = 321/420 (76%), Gaps = 1/420 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++DQDRIF+NLY Q + ++ RG W IL D++I+E+K SGLRGRGGAGF Sbjct: 35 ISDQDRIFSNLYKDQDPFIDGALKRGDWYRTKDILACPHDFVIDEIKKSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+SFMPK RP +LVVNADESEP TCKDR+IMRH+PH L+EG +I +A+ A A Sbjct: 95 SGLKYSFMPKKSDGRPSFLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++Y+RGEF E L+ AV E Y G +G N+ GYD DI VH GAGAYICGEET++L Sbjct: 155 YVYIRGEFWDEAMQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYICGEETSMLS 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG G+PR+KPP+PA GLYGCPTTV NVE+++ VPTI+RRG W++ FGR+NN GTK Sbjct: 215 SIEGVIGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGGWFASFGRKNNHGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SGH+N PCTVE+ MSI+ ELIE+H GG+RGGWDNLL VIPGGSS P + Sbjct: 275 LYCLSGHINNPCTVEDEMSISLRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 334 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+MD+D L E GS GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ Sbjct: 335 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 394 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ G A EID LYE++K IEG TICALG+AAAWP+QGLIK++R +IE+RID+YH Sbjct: 395 ILERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRDVIEDRIDKYH 454 >gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] Length = 643 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 236/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + + + G ++ + K+L + +I + ASGLRGRGGA Sbjct: 157 FYKKQKRVALRNCGVINPEKIEEYIGTGGYEALGKVLTTMSPEDVIEVITASGLRGRGGA 216 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW F +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 217 GFPTGRKWQFAKDNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 275 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L A+ + GLLG N G+D DI + GAGA++CGEETA Sbjct: 276 TQGYIYVRAEYPIAVERLNIAIKQAREMGLLGKNLFNTGFDFDIELRLGAGAFVCGEETA 335 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A VP I+ GA W+S FG E ++ Sbjct: 336 LMTSIEGHRGEPRPRPPFPAVKGLFEKPTILNNVETWANVPQIIMNGAEWFSSFGTEKSK 395 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G ++ VE M T E++E+ G G A GG S C+PA Sbjct: 396 GTKVFALGGKIHNTGLVEVPMGTTLREIVEEIGG-GIPGGKKFKAAQTGGPSGGCIPAEH 454 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD T ++ F ESCG+C+PCR GT Sbjct: 455 L-DVPIDYENLMAIGSMMGSGGLIVMDEETCMVDIAKFFLNFTVDESCGKCSPCRLGTKR 513 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ +++++ G A ++D L E+ I+ +CALG A P+ + FR I Sbjct: 514 LLEMLDKITSGNATMEDLDKLEELCYYIKDNALCALGQTAPNPVLSTLHYFRDEYIAHIV 573 Query: 418 QYHRCN 423 +C Sbjct: 574 D-KKCP 578 >gi|58579167|ref|YP_197379.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Welgevonden] gi|58417793|emb|CAI26997.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str. Welgevonden] Length = 425 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 275/420 (65%), Positives = 323/420 (76%), Gaps = 2/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+D++FTNL G L + SRG W N+ IL G + II EVK SGLRGRGGAGF Sbjct: 1 MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA + ILRRG++W++ G+ENN G Sbjct: 181 LESLEGRKGNPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++M +LVKG A +IDLL +S IEG TICALGDAAAWP+QGLI++FR +IEERID Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420 >gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] Length = 626 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 158/428 (36%), Positives = 237/428 (55%), Gaps = 7/428 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I N+ +Q +SL++ + + + K + + + II+E+K SGLRGRGGA Sbjct: 141 FYDKQYKIALRNVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGA 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW KV + Y++ NADE +PG DR I+ +PH+++EG I AIGA Sbjct: 201 GFPTGRKWESAYKVEN-SQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ + L+ A+ + + LLG N + DI + G+GA++CGE TA Sbjct: 260 NQGFIYVRAEYPIAVKRLRIAIQQAKETNLLGDNIFGSDFSFDIELRLGSGAFVCGEGTA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EG++G PR K A GL+ PT +NNVE+ A VP I+ RGA W++ FG E + Sbjct: 320 LMESIEGRRGMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M T E+I GGI+ AV GG S C+P Sbjct: 380 GTKVFALGGKVVNTGLVEVPMGSTLREIIFDIGGGIK-DGKKFKAVQTGGPSGGCIPEEF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L ++GS +G+ +IVMD ++ F ESCG+C PCREGT Sbjct: 439 L-DTPVDFESLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G + +I+ L ++ I ++C LG A P+ +K FR E I Sbjct: 498 MLEILEKITSGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHIY 557 Query: 418 QYHRCNFQ 425 +C Sbjct: 558 D-KKCPAH 564 >gi|145488753|ref|XP_001430380.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397477|emb|CAK62982.1| unnamed protein product [Paramecium tetraurelia] Length = 462 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 266/407 (65%), Positives = 315/407 (77%), Gaps = 2/407 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 23 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+K+SFMPKV D YLV+NADESEPGTCKDR+I+RH+PH L+EG + FA+ A Sbjct: 83 SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+ Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCE 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+ Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 429 >gi|197105262|ref|YP_002130639.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1] gi|196478682|gb|ACG78210.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1] Length = 437 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 261/420 (62%), Positives = 325/420 (77%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIF NLYGL L + +RG W+ I+ + +WI +++KASGLRGRGGAGF Sbjct: 4 ILADKDRIFLNLYGLHDWGLEGAKARGAWNGTKDIVAQSPEWICDQIKASGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+FMPK S+RPHYLVVNADESEPG CKDR+I+R++PH LIEGC+IA AI AH Sbjct: 64 PTGLKWTFMPKQESERPHYLVVNADESEPGACKDREILRNDPHLLIEGCLIACRAIRAHT 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IY+RGE++ ERE L AA+ + Y + L+G + G+D D+ + HG GAYICG+ETAL+E Sbjct: 124 AYIYIRGEYVHERERLTAAIQQAYDAKLIGPGNIHGWDCDVRIQHGGGAYICGDETALME 183 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPA G++G PTT+NNVESI+VV TILRRGA W++GFG E + GTK Sbjct: 184 SLEGKKGQPRLKPPFPAGAGIWGAPTTINNVESISVVGTILRRGADWFAGFGTEKSTGTK 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ SGHVN PC VE+++ I +LIE+H GG+RGGW NL AVIPGG SV +PA + Sbjct: 244 LFAASGHVNKPCVVEDAVGIPVRQLIEEHFGGVRGGWGNLKAVIPGGISVRMIPAHEAEE 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+M Y+ L+ GSGLGT +IV D+ D++KAI R S FYKHESCGQCTPCREGTGWM R Sbjct: 304 AVMTYEDLQARGSGLGTGTMIVFDKDADLVKAIARASYFYKHESCGQCTPCREGTGWMWR 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VMER+V G A+ EIDLL +V+ +EG TIC LGDAAAWPIQGL ++FR +EERI Y Sbjct: 364 VMERMVTGEAEMSEIDLLLDVASQVEGHTICGLGDAAAWPIQGLFRHFRHEVEERITSYR 423 >gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] Length = 602 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 151/424 (35%), Positives = 244/424 (57%), Gaps = 6/424 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + + + N + +++ + ++ G ++ + K + + II+ + SGLRGRGGAGF Sbjct: 112 FVKQKKIVLENSGYIDPENIEEYIAAGGYEALKKAFKMKPEEIIDFITKSGLRGRGGAGF 171 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F D Y+V NADE +PG DR+++ +PH +IEG +I ++AIGA Sbjct: 172 PTGLKWKFTRDAPGD-EKYIVCNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 230 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIYVR E+ + L+ A+ + G LG N G+ +I++ GAGA++CGEETAL+ Sbjct: 231 GFIYVRAEYPLAIKRLRIALKQAREKGFLGENILGSGFSFEIVIKEGAGAFVCGEETALI 290 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G PR +PP+PA GL+G PT +NNVE+ A VP I++ G Y+ G E ++GT Sbjct: 291 ASIEGKRGMPRPRPPYPAQKGLWGRPTNINNVETWANVPWIIKHGWEAYAALGTEKSKGT 350 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F++SG + + VE M IT E++ + GG + G + AV GG S C+P + Sbjct: 351 KVFALSGKIKHGGNVEVPMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIP-DYLF 408 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + G+ +G+ ++VMD T ++ F ESCG+CT CR GT M Sbjct: 409 NTPVDYESVTATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRLGTKRMW 468 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++++ KG +I+ L +++ ++ ++C LG A P+ +K F+ I+ Sbjct: 469 ELLDKITKGEGALEDIEKLEKLAPLVKTGSLCGLGQTAPNPVLTTLKYFKDEYLAHIE-- 526 Query: 420 HRCN 423 RC Sbjct: 527 GRCP 530 >gi|57239209|ref|YP_180345.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Welgevonden] gi|57161288|emb|CAH58209.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str. Welgevonden] Length = 425 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 275/420 (65%), Positives = 323/420 (76%), Gaps = 2/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+D++FTNL G L + SRG W N+ IL G + II EVK SGLRGRGGAGF Sbjct: 1 MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA + ILRRG++W++ G+ENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++M +LVKG A +IDLL +S IEG TICALGDAAAWP+QGLI++FR +IEERID Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420 >gi|144899470|emb|CAM76334.1| NADH-quinone oxidoreductase, F subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 425 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 300/418 (71%), Positives = 341/418 (81%), Gaps = 1/418 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTNLYG+ L + SRG WDN +L KGRD II EVK SGLRGRGGAGF Sbjct: 1 MLRDQDRIFTNLYGIHDWRLKGAQSRGDWDNTKALLAKGRDAIIEEVKTSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSFMPK RPHYLV+NADE EPGTCKDR+IMR +PH L+EG ++ASFAIGAH Sbjct: 61 GTGMKWSFMPKTEGARPHYLVINADEGEPGTCKDREIMRFDPHKLVEGALLASFAIGAHA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF+RE E LQ A+DE YA+GL+G N+ G+D D+ VH GAGAYICGEE+AL+ Sbjct: 121 SYIYIRGEFVREAEHLQVAIDEAYAAGLIGKNACGSGWDFDLYVHRGAGAYICGEESALI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVP ILRR +W++G GR N GT Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPAILRRSGAWFAGLGRAKNSGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISGHVN PC VEE M I+F ELI+KHCGGIRGGWDNL+ VIPGG S P L + Sbjct: 241 KLFCISGHVNKPCNVEEEMGISFRELIDKHCGGIRGGWDNLMGVIPGGCSTPVLTREVIE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+DGL+E GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 301 NCPMDFDGLREAGSGLGTAAVIVMDKSTDIVRAITRLSRFYKHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 R+MER+ KG A EIDLL +V+K +EG TICALGDAAAWPIQGLI+NFRP IE++I Sbjct: 361 RMMERMDKGDATIEEIDLLQQVTKQVEGHTICALGDAAAWPIQGLIRNFRPEIEKKIR 418 >gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067] gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067] Length = 596 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 163/426 (38%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R + N + +++ + ++ G ++ + K + +++EVK SGLRGRGG Sbjct: 111 FYKKQHRLVLANCGAINPEAIEEYIAVGGYEALAKAVTQMTPQEVVDEVKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKW F SD Y++ NADE +PG DR ++ +PH ++EG I +A+GA Sbjct: 171 GFPTGMKWQFAKNSESD-KKYVICNADEGDPGAFMDRSVLEGDPHRVLEGMAICGYAMGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + GLLG + + + I + GAGA++CGEETA Sbjct: 230 DEGYIYVRAEYPLAIKRLRTAIAQAEEMGLLGEHIFESDFSFTIHIKEGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFPA GL+G PT +NNVE+ A V I+ GA WY G E ++ Sbjct: 290 LMASIEGKRGMPRPRPPFPAVSGLWGKPTNINNVETFANVAQIIVNGADWYCRLGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N E M I+ E+I GGI AV GG S CLP Sbjct: 350 GTKVFALTGKINNTGLAEVPMGISMREIIYDIGGGI-TNGKKFKAVQIGGPSGGCLPES- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +DYD L G+ +G+ ++VMD T ++ F + ESCG+CTPCREGT Sbjct: 408 MLDLPVDYDSLIAAGAMMGSGGLVVMDEDTCMVDVAKFFLNFTQSESCGKCTPCREGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G ++ +I+LL ++KNI+ +C LG A P+ +K FR E I Sbjct: 468 MLEILTRITEGQGREGDIELLENLAKNIKETALCGLGQTAPNPVLSTLKYFRDEYEAHIK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|330813987|ref|YP_004358226.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp. IMCC9063] gi|327487082|gb|AEA81487.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp. IMCC9063] Length = 430 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 262/424 (61%), Positives = 329/424 (77%), Gaps = 4/424 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D++RIF NLYG + SL + RG W + +I+ KG+DWII EVK S LRGRGGAGF Sbjct: 1 MLEDKNRIFKNLYGDESFSLPAAEVRGDWKDTKEIISKGKDWIIEEVKKSELRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSF PK RPHYLV+NADESEPGTCKDRDI+R+EPH LIEGC+IA++A+ A+ Sbjct: 61 PTGVKWSFAPKEVKEGRPHYLVINADESEPGTCKDRDILRYEPHKLIEGCLIAAYAVSAN 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+RGE++ E + LQ A++E Y G LG N+ G+D+DI +H+GAGAYICGEETAL Sbjct: 121 ICYVYIRGEYVNEGKVLQEAINEAYEKGYLGKNAAGTGWDLDIFIHYGAGAYICGEETAL 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG KGQPRLKPPFPA +GLYGCPT VNNVE++AVVPTIL+RG+ W++ FGR NRG Sbjct: 181 LESLEGNKGQPRLKPPFPALIGLYGCPTIVNNVETVAVVPTILKRGSEWFASFGRVKNRG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISG+VN PC VEE M I LIEKH GG+ GGWDNL AVIPGGSS+P LP Sbjct: 241 TKIFCISGNVNNPCNVEEEMGIPLKVLIEKHAGGVIGGWDNLQAVIPGGSSMPLLPKNIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L E SGLGTA ++V+D+S DI+K + R++ FYKHESCGQCTPCREGTGWM Sbjct: 301 ETINMDFDALIEAKSGLGTAGIVVIDKSQDIVKCMTRIARFYKHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-- 416 R++ER+ +G + EID+L +V+K IEG TICA G+ ++WP+QGL+++FR +E + Sbjct: 361 WRMLERIGRGESNISEIDMLMDVTKQIEGHTICAFGEGSSWPVQGLLRHFRKEMEAKCNS 420 Query: 417 DQYH 420 DQYH Sbjct: 421 DQYH 424 >gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4] gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4] Length = 626 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 158/428 (36%), Positives = 236/428 (55%), Gaps = 7/428 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I N+ +Q +SL++ + + + K + + + II+E+K SGLRGRGGA Sbjct: 141 FYDKQYKIALRNVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGA 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW KV + Y++ NADE +PG DR I+ +PH+++EG I AIGA Sbjct: 201 GFPTGRKWESAYKVEN-SQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ + L+ A+ + LLG N + DI + G+GA++CGE TA Sbjct: 260 NQGFIYVRAEYPIAVKRLRIAIQQAKEMNLLGDNIFGSDFSFDIELRLGSGAFVCGEGTA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EG++G PR K A GL+ PT +NNVE+ A VP I+ RGA W++ FG E + Sbjct: 320 LMESIEGRRGMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M T E+I GGI+ AV GG S C+P Sbjct: 380 GTKVFALGGKVVNTGLVEVPMGSTLREIIFDIGGGIK-DGKKFKAVQTGGPSGGCIPEEF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L ++GS +G+ +IVMD ++ F ESCG+C PCREGT Sbjct: 439 L-DTPVDFESLGKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G + +I+ L ++ I ++C LG A P+ +K FR E I Sbjct: 498 MLEILEKITSGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHIY 557 Query: 418 QYHRCNFQ 425 +C Sbjct: 558 D-KKCPAH 564 >gi|58617220|ref|YP_196419.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Gardel] gi|58416832|emb|CAI27945.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str. Gardel] Length = 425 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 275/420 (65%), Positives = 323/420 (76%), Gaps = 2/420 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+D++FTNL G L + SRG W N+ IL G + II EVK SGLRGRGGAGF Sbjct: 1 MLEDKDKVFTNLSGQGSPFLKAAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 STG+KWSFMPK +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+ Sbjct: 61 STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF E L A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA + ILRRG++W++ G+ENN G Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++M +LVKG A +IDLL +S IEG TICALGDAAAWP+QGLI++FR +IEERID Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420 >gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] Length = 626 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 156/428 (36%), Positives = 236/428 (55%), Gaps = 7/428 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I N+ +Q +SL++ + + + K + + + II E+K SGLRGRGGA Sbjct: 141 FYDKQFKIALRNVEKIQLESLNEYIGADGYQALHKAIFDLDQKEIIEEMKKSGLRGRGGA 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW KV + Y++ NADE +PG DR I+ +PH+++EG I AIGA Sbjct: 201 GFPTGRKWESAYKVEN-NQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ + L+ A+ + LLG+N + DI + G+GA++CGE TA Sbjct: 260 NQGFIYVRAEYPIAVKRLRIAIQQAKEMNLLGNNIFGSDFSFDIELRLGSGAFVCGEGTA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EG++G PR K A GL+ PT +NNVE+ A VP I+ +GA W++ +G E + Sbjct: 320 LMESIEGRRGMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYKGADWFTSYGTEGSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M T E+I GGI+ AV GG S C+P Sbjct: 380 GTKVFALGGKVVNTGLVEVPMGSTLREIIFDIGGGIK-DGKKFKAVQTGGPSGGCIPEEF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L ++GS +G+ +IVMD ++ F ESCG+C PCREGT Sbjct: 439 L-DTPVDFESLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G + +I+ L ++ I ++C LG A P+ +K FR E I Sbjct: 498 MLEILEKITSGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHIY 557 Query: 418 QYHRCNFQ 425 +C Sbjct: 558 D-KKCPAH 564 >gi|126135420|ref|XP_001384234.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces stipitis CBS 6054] gi|126091432|gb|ABN66205.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces stipitis CBS 6054] Length = 484 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 263/426 (61%), Positives = 327/426 (76%), Gaps = 4/426 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+YG G L SM G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 31 LKDTDRIFQNIYGKYGHDLKSSMKMGDWHKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 90 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A + A Sbjct: 91 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 150 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +G LG N+ GYD DI +H G GAY+CGEETA Sbjct: 151 TAAYIYIRGEFYNEAVILQNAINEAYKAGFLGKNACGSGYDFDIYIHRGMGAYVCGEETA 210 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG W++ FGRE N+ Sbjct: 211 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNQ 270 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G KLF ISGHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIPGGSSVP + Sbjct: 271 GVKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPIMTKET 330 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD L+++GSGLGTAAVIVM++ TDII+ I R S FYKHESCGQCTPCREGT W Sbjct: 331 CDNILMDYDALRDVGSGLGTAAVIVMNKQTDIIRGIQRFSHFYKHESCGQCTPCREGTTW 390 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R+M+R +G A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+ Sbjct: 391 LQRMMDRFQEGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 450 Query: 418 QYHRCN 423 ++ + N Sbjct: 451 EFKKKN 456 >gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 625 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 242/422 (57%), Gaps = 6/422 (1%) Query: 4 DQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q RI G + +++ + ++ G + + K L+ + I + + LRGRGGAGF Sbjct: 142 KQSRIVLEHCGKINPENIKEYIAAGGYQALAKALQMTPEEICQVMLKAKLRGRGGAGFPA 201 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + K SD Y++ N DE +PG DR IM +PH +IEG +IA +A GA + Sbjct: 202 GIKWDSVRKQKSD-VKYVICNGDEGDPGAFMDRSIMEGDPHRVIEGMIIAGYASGATQGY 260 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ L+ A+++ GLLG N G+D DI ++ GAGA++CGE +AL+ S Sbjct: 261 IYVRAEYPLAVRRLKKAIEQAREFGLLGKNILGSGFDFDIKINMGAGAFVCGEGSALIAS 320 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++G P+ +PP GL+G PT +NNVE+ A VP I+ GA WY G E + GTK Sbjct: 321 IEGQRGMPKTRPPRTVEKGLFGKPTVLNNVETYANVPMIILNGADWYLSIGTETSPGTKA 380 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G++ +E M T E+I + GGI G + L AV GG S CL + Sbjct: 381 FALTGNIVNTGLIEVPMGTTLREVIYEIGGGIPNGKE-LKAVQIGGPSGGCLTKEHL-DL 438 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D L +G+ +G+ ++VMD T +++ F + ESCG+C PCREGT M+++ Sbjct: 439 PLDFDTLGTVGAMIGSGGMVVMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKRMLKL 498 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +E++ G +++++LL E++ ++ ++C LG A P+ +K FR + + R Sbjct: 499 LEKITSGKGTEKDLELLEELAVTVKDGSLCGLGQTAPNPVLTTLKYFRDEYLAHVRE-KR 557 Query: 422 CN 423 C Sbjct: 558 CP 559 >gi|254456627|ref|ZP_05070056.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083629|gb|EDZ61055.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 443 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 261/416 (62%), Positives = 323/416 (77%), Gaps = 1/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLY G L+ S RG W N ++ +KGRDWIINE+K+S LRGRGGAGF Sbjct: 1 MLKDKDRIFQNLYNDLGSDLNSSQKRGDWVNTKELTDKGRDWIINEIKSSELRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF PK RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFAPKEVGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ + + LQAA+DE Y L+G N+ G+D+DI +H+GAGAYICGEETALL Sbjct: 121 CYIYIRGEYFIDGQKLQAAIDEAYKKKLIGKNAAGTGWDLDIYIHYGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILRRG W+S GRE N GT Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRRGGKWFSSLGRERNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISG+VN PC VEE M+I ELIE H GG+ GGWDNL AVIPGGSS+P +P + Sbjct: 241 KIFCISGNVNNPCNVEEEMNIPLKELIEVHAGGVIGGWDNLQAVIPGGSSMPLIPKKKCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L SGLGTA ++V+++ DIIK + R++ FYKHESCGQCTPCREG+GWM Sbjct: 301 TLTMDFDSLMAEKSGLGTAGIVVINKDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R++ER+ KG A K EI++L +V+ I G TICA G+ ++WP+QGL+++F+ IEER Sbjct: 361 RMLERMAKGEATKDEIEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFKKEIEER 416 >gi|332295878|ref|YP_004437801.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM 14796] gi|332178981|gb|AEE14670.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM 14796] Length = 537 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q RI N + + +++ +++G ++++ K L +I +K S LRGRGGA Sbjct: 109 FFSKQTRIVLRNCGFINPEDITEYIAQGGYESLGKALTSMSSADVIKIIKDSLLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K SD Y++ NADE +PG +R ++ +PH+++EG IA +A+GA Sbjct: 169 GFPTGLKWELAKKQTSDI-KYIICNADEGDPGAYMNRSVLEGDPHSVLEGMTIAGYAVGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIY+R E+ + LQ A+ + GLLG N + DI + GAGA++CGEETA Sbjct: 228 QKGFIYIRAEYPLAVKRLQIAIKQAKEIGLLGKNILGTNFSFDIELRIGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S EGK+G+PR KPP+P +GL+G PT +NNVE++A VP I+ +GA+++ G E + Sbjct: 288 LINSTEGKRGEPRKKPPYPIEIGLFGRPTVINNVETLANVPIIIEKGANFFKQIGTEKSP 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS+ G VN +E + + ++ GGI A GG S +PA Sbjct: 348 GTKAFSLVGKVNIAGLIEVPLGTSLRTIVFDIGGGIP-EGHTFKAAQTGGPSGGVIPANY 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MDY+ L ++G+ +G+ +IVMD ++ ++ F ESCG+C PCREGT Sbjct: 407 I-DIPMDYENLPQLGAIMGSGGLIVMDETSCMVDVAKFFLKFTVDESCGKCVPCREGTRQ 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ +G +++DLL ++ I+ ++C LG A P+ +++FR + Sbjct: 466 MLNILEKITRGGGTMKDLDLLEKLGNVIKSTSLCGLGQTAPNPVLSTLRHFRDEYISHVK 525 Query: 418 QYHRCN 423 +C Sbjct: 526 D-KKCP 530 >gi|260945745|ref|XP_002617170.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720] gi|238849024|gb|EEQ38488.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720] Length = 486 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 4/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF N+YG G L + G W +I+ KG WII+E+K SGLRGRGGAGF Sbjct: 32 LKDSDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A + A Sbjct: 92 SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 151 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y SG LG N+ GYD D+ +H G GAYICGEETA Sbjct: 152 TAAYIYIRGEFYNETTILQNAINEAYKSGFLGKNACGSGYDFDVYIHRGMGAYICGEETA 211 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG W++ FGRE N Sbjct: 212 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNA 271 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ISGHVN PCTVEE MSI EL+EKHCGG+ GGWDNLL VIPGG SVP +P Sbjct: 272 GTKLYCISGHVNEPCTVEEEMSIPLKELLEKHCGGVIGGWDNLLGVIPGGCSVPVMPKDV 331 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MDYD LK++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W Sbjct: 332 CDNVLMDYDALKDVGSGLGTAAVIVMNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTW 391 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++M+R VKG A ++EID ++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+ Sbjct: 392 LQKMMDRFVKGQATEKEIDQIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 451 Query: 418 QYHR 421 QY + Sbjct: 452 QYQK 455 >gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 160/425 (37%), Positives = 241/425 (56%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q+R+ N + + + D + + K+ + +I+ +K SGLRGRGGAG Sbjct: 130 FYKKQERVALRNCGLVDPEDIDDYFLHDGYTALHKVTGMEQQAVIDIIKNSGLRGRGGAG 189 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 FSTGMKW F +D Y+V NADE +PG DR I+ +PH++IE I +AIGA Sbjct: 190 FSTGMKWQFALNNKAD-QKYVVCNADEGDPGAFMDRSILEGDPHSIIEAMAICGYAIGAT 248 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +Y+R E+ + L+ A++E SG+LG+N G++ DI + +GAGA++CGEETAL Sbjct: 249 KGLVYIRAEYPLAIKRLKIALEEAKESGVLGTNIFNSGFEFDIEIKYGAGAFVCGEETAL 308 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG +G+P KPPFPA G G PT VNNVE++A +P I+ +GA W+ FG E + G Sbjct: 309 IHSMEGHRGEPTTKPPFPAEHGYNGYPTNVNNVETLANIPVIINKGADWFKSFGTEKSSG 368 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G +N +E M T E+I + GGI+ +V GG S CL + Sbjct: 369 TKVFALAGKINNVGLIEVPMGTTLREVIYEIGGGIK-DGKKFKSVQTGGPSGGCLTEKHL 427 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L E GS +G+ +IVMD ++ F ESCG+CTPCR G + Sbjct: 428 -DVAIDFDSLMEQGSMMGSGGMIVMDEDDCMVAVSKFYLEFTVEESCGKCTPCRIGNQRL 486 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++E++ KG + ++ L E+S I+ ++C LG A PI + NF E + Sbjct: 487 LEILEKITKGNGTEDDLRKLKELSNVIKDTSLCGLGQTAPNPILSTLNNFWDEYEAHVKD 546 Query: 419 YHRCN 423 H+C Sbjct: 547 -HKCP 550 >gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 604 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 159/425 (37%), Positives = 246/425 (57%), Gaps = 7/425 (1%) Query: 2 LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 L Q RI N + +++ + G + + L E +I EV++SGLRGRGGAG Sbjct: 101 LDSQKRILLKNSGKIDPENIESYLEEGGYQGLLNALKEMTPKDVIEEVQSSGLRGRGGAG 160 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW F ++ +P Y++ NADE +PG DR ++ +PH+L+EG IA +AIGA+ Sbjct: 161 FPTFKKWEFT-RIEERQPKYVICNADEGDPGAFMDRSVLESDPHSLLEGMAIAGYAIGAN 219 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ + L+ A+++ G LG N G+D DI + GAGA++CGEETAL Sbjct: 220 TGYIYIRAEYPLAVKRLEIAIEQAKEKGYLGKNIQDTGFDFDIYIREGAGAFVCGEETAL 279 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G P KPPFPA GL+ P+ +NNVE++A VP + +GA YS G EN++G Sbjct: 280 IASIEGKRGTPTFKPPFPAQKGLWTQPSCINNVETLANVPRVFLQGAEAYSELGTENSKG 339 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V +E M I +++ + GGI AV GG S C+PA Sbjct: 340 TKVFALAGDVKRGGLIEVPMGIKIKDIVYEVGGGIVED-KGFKAVQIGGPSGGCIPAKY- 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + +DY+ L E+G+ +G+ ++VMD T ++ F ESCG+CT CR GT M Sbjct: 398 QDVSVDYESLNELGAIMGSGGLLVMDEDTCMVDVAKFFLDFTAEESCGKCTFCRIGTHQM 457 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++++ +G + +ID L ++ I ++C LG A P+ +K FR E + + Sbjct: 458 LDILDKITEGRGEMEDIDRLEDLGSKIIKGSLCGLGQTAPNPVLTTLKYFRDEYEAHVKE 517 Query: 419 YHRCN 423 +RC Sbjct: 518 -NRCP 521 >gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] Length = 595 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 236/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + G + + K+L E D +I + SGLRGRGGA Sbjct: 109 FYKKQHRIALRNCGVINPEVIEEYIGTGGYQALGKVLTEMTPDEVIQTLLDSGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 169 GFPTGLKWKLAKGNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHAVLEAMAIAGYAIGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ + L+ A+++ LLG + G+ DI + GAGA++CGEETA Sbjct: 228 SQGFIYVRAEYPIAVQRLKIAIEQAREMELLGKDIFGTGFSFDIDLRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR +PPFPA GL+G P+ +NNVE++A +P I+ G W++ G E ++ Sbjct: 288 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETLANIPQIILNGPEWFNAMGTEKSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G ++ VE M T E++E+ G G A GG S C+PA Sbjct: 348 GTKVFALGGKIHNTGLVEVPMGTTLREIVEEIGG-GIPGGKKFKAAQTGGPSGGCIPAEH 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IV+D ++ F ESCG+CTPCR GT Sbjct: 407 -FDIPIDYDNLISIGSMMGSGGLIVLDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKR 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ KG A +ID L E+ ++ ++C LG A P+ + FR E I Sbjct: 466 MLEILTKITKGQATMEDIDKLEELCYYVKTNSLCGLGQTAPNPVLSTLHFFRDEYEAHIK 525 Query: 418 QYHRCN 423 + RC Sbjct: 526 E-KRCP 530 >gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 582 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 157/427 (36%), Positives = 249/427 (58%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +L+ Q R+ N + +++ + ++ G ++ + K LE + +I E+K SGL+GRGGA Sbjct: 95 ILSKQKRVALKNCGIIDPENIDEYIATGGYEAMKKCLETMTPEDVIEEIKISGLKGRGGA 154 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ K Y+V NADE +PG DR ++ +PH LIEG +I +AIGA Sbjct: 155 GFPTWFKWN-AAKQSPGSVKYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMIINGYAIGA 213 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK--LGYDVDIIVHHGAGAYICGEET 176 + IYVR E+ L A++E + G LG N +D D+ + GAGA++CGEET Sbjct: 214 NEGIIYVRAEYPLAINRLNHAIEEARSRGYLGKNILGLDKFDFDLRIKAGAGAFVCGEET 273 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ESL+G++G PRLKPPFPA G + PT +NNVE+ A V I+ G + + G EN+ Sbjct: 274 ALIESLQGERGMPRLKPPFPAQRGYWDKPTNINNVETFANVAWIINNGGAAFGHMGTENS 333 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F+++G + VE M IT +++ GGI+G + AV GG S C+PA Sbjct: 334 KGTKVFALTGKIKKGGLVEVPMGITLRDIVYDIGGGIKGDKE-FKAVQMGGPSGGCIPAE 392 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ + ++G+ +G+ ++VMD +T ++ F + ESCG+C CR GT Sbjct: 393 -LLDTSVDYESIAKIGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCIHCRIGTK 451 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ R+ +G ++ +I+LL ++ + I+ ++C LG A P+ I+ FR E I Sbjct: 452 RMLEILTRICEGEGKEGDIELLEDLGEKIKEGSLCGLGQTAPNPVLSTIRYFREEYESHI 511 Query: 417 DQYHRCN 423 +C Sbjct: 512 -HRKKCP 517 >gi|322825181|gb|EFZ30268.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 484 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 269/424 (63%), Positives = 323/424 (76%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G +++ + RG W IL KG DW+I E+KASGLRGRGGAGF Sbjct: 23 LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPKV D YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 83 SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGEF E S++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG W+S FGR+NN G Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVE+ MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M R V G A+K EI + +VSK +EGRTICAL AAAWP+QGL ++F P++EERI++Y Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442 Query: 420 HRCN 423 N Sbjct: 443 WEAN 446 >gi|71410619|ref|XP_807595.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70871631|gb|EAN85744.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 484 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 268/424 (63%), Positives = 323/424 (76%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G +++ + RG W IL KG DW+I E+KASGLRGRGGAGF Sbjct: 23 LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPKV D YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 83 SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGEF E S++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG W+S FGR+NN G Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVE+ MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE+ +GLGTAAVIVMD++TD+I AI R+S FY +ESCGQCTPCREG+ W+ Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKTTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M R V G A+K EI + +VSK +EGRTICAL AAAWP+QGL ++F P++EERI++Y Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442 Query: 420 HRCN 423 N Sbjct: 443 WEAN 446 >gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 597 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 Q+RI +N + +S+ + ++RG + + + + + + EV + LRGRGGA Sbjct: 111 FYKQQERIVLSNCGYINPESIDEYIARGGYQGLARAVTEFDPQGVTEEVINANLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW F + + Y+V NADE +PG DR I+ +PH++IEG IAS+AIGA Sbjct: 171 GFPAGKKWKFASQEP-EPTKYMVCNADEGDPGAFMDRSILEGDPHSVIEGMAIASYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++Y+R E+ L+ A+ + GLLG N G++ + V GAGA++CGE TA Sbjct: 230 EVGYVYIRAEYPLAVRRLKEAIQQAEELGLLGENILGSGFNFKLKVKEGAGAFVCGESTA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG++G PR PP GL+G PT +NNVE++A V IL +GA ++ FG E + Sbjct: 290 LTRSIEGRRGMPRPTPPRSTEKGLWGKPTVLNNVETLACVSFILSKGAEEFTKFGTEQSP 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M I+ +++ GGI+ G + AV GG S CLP + Sbjct: 350 GTKVFALTGKVNNTGLVEVPMGISIRDIVFDIGGGIQHGNK-IKAVQIGGPSGGCLPEDK 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L + G+ +G+ ++VMD T ++ F + ESCG+CTPCREGT Sbjct: 409 L-DLSVDFDTLDDAGAMMGSGGLVVMDEETCVVDVSKFFLKFTQAESCGKCTPCREGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ KG + ++IDLL E+ + I ++C LG +A P+ ++ F E I+ Sbjct: 468 MLEILERITKGQGEPKDIDLLKELGEMIINTSLCGLGKSAPNPVLSTLRYFEDEYREHIE 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 K-GRCP 532 >gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis] Length = 846 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + +++++ ++ G + + K L +I + SGLRGRGGA Sbjct: 353 FFHPQIRVALRNCGIIDPENINEYIASGGYFGLAKALTAMKPTEVIETITCSGLRGRGGA 412 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW++ + Y+V NADE +PG DR I+ +PH ++E IA +AIGA Sbjct: 413 GFLTGRKWAYTA-AVKETVKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMTIAGYAIGA 471 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ L+ A+D+ + +GLLG N G+ DI + GAGA++CGEETA Sbjct: 472 QQGFVYVRAEYPIAVHRLEVAIDQAHQAGLLGQNILGTGFSFDIEIRLGAGAFVCGEETA 531 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PP+PA GL+G PT +NNVE+ A +P I+ +GA WY+ G ++ Sbjct: 532 LLNSVSGKRGEPRTRPPYPAVSGLWGKPTLLNNVETYANIPQIICKGADWYAAMGTSGSK 591 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G +N +E M + + GG AV GG S CLPA Sbjct: 592 GTKIFSLAGKINNTGLIEVPMGTSLRTI-IYGIGGGIPKGKAFKAVQTGGPSGGCLPAEY 650 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L ++GS +G+ +IVMD + ++ F + ESCG+CTPCR GT Sbjct: 651 L-DIPIDYDSLMKIGSMMGSGGLIVMDETDCMVDIARFYLEFTQDESCGKCTPCRIGTRR 709 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ +G ++++LL E+ +I+ ++C LG A P+ +++FR E I Sbjct: 710 LLEIITRITEGKGTMKDLELLEELGHDIKEASLCGLGQTAPNPVLSTLRHFRHEYEAHIK 769 Query: 418 QYHRCN 423 + RC Sbjct: 770 E-KRCP 774 >gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] Length = 538 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 155/421 (36%), Positives = 241/421 (57%), Gaps = 6/421 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 T Q + N + + + D ++ G + + K+L + +I EV+ SGLRGRGGA Sbjct: 114 FFTRQKKNALENAGVVDPERIEDYIATGGYAALIKVLTEFSPSEVIQEVQKSGLRGRGGA 173 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K + ++V NADE +PG DR I+ +PH ++EG +IA++A+GA Sbjct: 174 GYPTGLKWSTVAKAEGE-QKFVVCNADEGDPGAFMDRSILESDPHRVLEGMIIAAYAVGA 232 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + + A+ + G LG N + + V GAGA++CGEETA Sbjct: 233 NQGYVYVRAEYPLAVKRFRTAIRQAEKMGFLGQNICGTPFSFKVDVRLGAGAFVCGEETA 292 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+S+EG +G PRL+PP+PA GL+G PT VNNVE+ A +P ILR G W++ G E ++ Sbjct: 293 LLQSVEGNRGMPRLRPPYPAQSGLFGKPTLVNNVETYANIPAILRNGGEWFAQTGTEKSK 352 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V +E M IT E++ GG+ G AV GG S C+P Sbjct: 353 GTKVFALTGKVKNTGLIEVPMGITLREIVYDIGGGVPDGRK-FKAVQTGGPSGGCIPEE- 410 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ LK +GS +G+ +IV+D +D+I F ESCG+C PCR GT Sbjct: 411 LLDTPVDYESLKALGSMMGSGGMIVIDDRSDMIDVARYFMEFSMEESCGKCVPCRVGTVQ 470 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ + + A + ++ L E+ + ++C LG AA PI +K FR +I Sbjct: 471 LYNLLGKFQRREATEEDLKTLEELCDLVRSASLCGLGQAAPNPILSTLKYFREEYLAKIR 530 Query: 418 Q 418 + Sbjct: 531 K 531 >gi|301062485|ref|ZP_07203131.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] gi|300443415|gb|EFK07534.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] Length = 540 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q R I N + + + + ++ G + + K+L R+ +I+E+K SGLRG GGA Sbjct: 110 FYSKQQRTILRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW K Y++ N DE +PG +DR +M PH+++EG +IA++AIGA Sbjct: 170 GFPTGRKWEVCYKAQGP-KKYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + G LG + G+D I + GAGA++CGEETA Sbjct: 229 QQGYIYVRAEYPLAVKRLRIAISQAKQKGFLGKDILGSGFDFKIALFQGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G PRL+PPFPA G+ G PT ++NV+++A +P I+ +GA ++ G E ++ Sbjct: 289 LIASVEGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPVIIDQGAESFARVGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT +F+++G V +E M +T E+I GGI AV GG S CLP Sbjct: 349 GTVVFALTGKVENNGLIEVPMGMTLREIIFDIGGGIP-DGKTFKAVQTGGPSGGCLPESA 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK GS +G+ ++VMD T ++ F + ESCGQCTPCR GT Sbjct: 408 L-DMPVDFDSLKAAGSMMGSGGLVVMDEDTCMVDLARYFLDFTQRESCGQCTPCRLGTKQ 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ + KG + +IDLL E+S+ + ++CALG A P+ I+ FR E I+ Sbjct: 467 LFDILNDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHIN 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|301060418|ref|ZP_07201277.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] gi|300445472|gb|EFK09378.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] Length = 540 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q R + N + + + + ++ G + + K+L R+ +I+E+K SGLRG GGA Sbjct: 110 FYSKQQRTLLRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW K D Y++ N DE +PG +DR +M PH+++EG +IA++AIGA Sbjct: 170 GFPTGRKWEVCYKAQ-DTKKYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + G LG + G+D I + GAGA++CGEETA Sbjct: 229 QQGYIYVRAEYPLAVKRLRIAISQAKKKGFLGKDILGSGFDFKIALFQGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G PRL+PPFPA G+ G PT ++NV+++A +P I+ GA + G E ++ Sbjct: 289 LIASVEGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPIIIDEGAESFVRIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT +F+++G V +E M +T E+I GGI AV GG S CLPA Sbjct: 349 GTVVFALTGKVENNGLIEVPMGMTLREIIFDIGGGIP-DGKAFKAVQTGGPSGGCLPASF 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK GS +G+ ++VMD T ++ F + ESCGQC PCR GT Sbjct: 408 L-DMPVDFDSLKAAGSMMGSGGLVVMDEETCMVDLARYFLDFTQRESCGQCIPCRLGTKQ 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ + KG + +IDLL E+S+ + ++CALG A P+ I+ FR E I+ Sbjct: 467 LFDILNDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHIN 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] Length = 596 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + ++++ + + K+L E + +I EVK SGLRGRGG Sbjct: 110 FFRKQRRIALRNCGVINPEDIREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K + P Y+V NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGVKWEFAYKQK-ETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+ + GLLG + G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA G++G PT +NNVE+ A +P I+ G W++ G E ++ Sbjct: 289 LLNSIMGKRGEPRPRPPFPAVKGVWGKPTIINNVETFANIPPIILNGGEWFASIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E+ GG G AV GG S C+PA Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREI-IYEIGGGIPGGKKFKAVQIGGPSGGCIPAE- 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L G+ +G+ ++VMD T ++ F ESCG+C PCR GT Sbjct: 407 LLDTPIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G ++ +I+ L E++K I+ +C LG A P+ ++ FR E I Sbjct: 467 MLELLDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|71083587|ref|YP_266306.1| NADH dehydrogenase I subunit F [Candidatus Pelagibacter ubique HTCC1062] gi|71062700|gb|AAZ21703.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique HTCC1062] Length = 443 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 255/416 (61%), Positives = 321/416 (77%), Gaps = 1/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLY +G + S +RG W + +I++KGR+WII EVK+S LRGRGGAGF Sbjct: 1 MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF PK RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ + + LQ A+DE Y L+G N+ G+D+DI +H+GAGAYICGEETALL Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G W++ G+ N GT Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISG+VN PC VEE MSI+ ELIE H GG+ GGWDNL AVIPGGSS+P +P Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L SGLGTA ++V++ DIIK + R++ FYKHESCGQCTPCREG+GWM Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R++ER+ KG A K E+++L +V+ I G TICA G+ ++WP+QGL+++FR IEER Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEER 416 >gi|261327930|emb|CBH10907.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma brucei gambiense DAL972] Length = 496 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 265/424 (62%), Positives = 320/424 (75%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G + + RG W +L KG DW+INE+KASGLRGRGGAGF Sbjct: 35 LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 95 SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVEE MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LKE +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+ E+ + +VSK +EGRTICAL AAAWP+QGL ++F PL+EERI++Y Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLEERIEKY 454 Query: 420 HRCN 423 N Sbjct: 455 WEAN 458 >gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 589 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 157/425 (36%), Positives = 238/425 (56%), Gaps = 7/425 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 + Q RI N + + + + + R +D + K++ + + EV SGLRGRGGAG Sbjct: 104 MDKQVRIVLRNCGIIDPEKIDEYIEREGYDALKKVVSSMTSEQVYTEVLDSGLRGRGGAG 163 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F D Y+V NADE +PG DR ++ +PH +IEG I +AIGA Sbjct: 164 FPTGLKWKFANLSKGD-EKYVVCNADEGDPGAFMDRSVLEGDPHAIIEGMAICGYAIGAS 222 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 IY R E+ ++L A+++ G LG + G+ D+ + GAGA++CGEETAL Sbjct: 223 HGIIYCRAEYPLAIKNLNIAIEQAKERGFLGEDIMGSGFSFDLKIKEGAGAFVCGEETAL 282 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR +PPFPA G++G PT +NNVE+ A V I+R G+ +S +G +RG Sbjct: 283 IASIEGKRGMPRPRPPFPAQSGVFGKPTNINNVETYANVAWIIRNGSKEFSKYGIGKSRG 342 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G + VE M + E+I GGI + AV GG S C+P + Sbjct: 343 TKVFALAGKIAKGGLVEVPMGMPIREVIYDIGGGIPDDKE-FKAVQMGGPSGGCIPKE-L 400 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + G+ +G+ ++VMD T +I F ++ESCG+C CR GT M Sbjct: 401 LDTPVDYESINATGAIMGSGGMVVMDEDTCMIDVARFFLSFVQNESCGKCPFCRIGTKRM 460 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++R+ KG ++ +IDLL E+ I+ ++C LG A P+ IK F+ I Sbjct: 461 LEILDRITKGEGKESDIDLLLELCHQIKDGSLCGLGQTAPNPVLTTIKYFKDEYMAHIVD 520 Query: 419 YHRCN 423 HRC Sbjct: 521 -HRCP 524 >gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans Z-2901] gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 592 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R + N + + + D ++ G ++ + K+L +++E+K SGLRGRGG Sbjct: 106 FYAKQKRLVLHNCGHINPERIEDYVANGGYEALRKVLTSMSPQEVVDEIKKSGLRGRGGG 165 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F D Y+V NADE +PG DR ++ +PH ++EG I +A+GA Sbjct: 166 GFPTGLKWQFTRDAKGD-KKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAVGA 224 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + LQ A+ + G LG N G++ I + GAGA++CGEETA Sbjct: 225 DEGYIYVRAEYPLAIKRLQIAIKQAEEKGYLGENIFGSGFNFRIKIKAGAGAFVCGEETA 284 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G PR +PPFPA GL+G PT +NNVE+ A VP I++ GA WY+ G E ++ Sbjct: 285 LLTSIEGNRGMPRPRPPFPAVKGLWGKPTNINNVETFANVPLIIKNGADWYASMGTEGSK 344 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M IT ++ GG G AV GG S CLP Sbjct: 345 GTKIFALTGKVNNTGLVEVPMGITMRQI-IFDIGGGIKGGRKFKAVQIGGPSGGCLPEE- 402 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCREGT Sbjct: 403 LLDLPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVAKFFLRFTQKESCGKCVPCREGTKR 462 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ +G + +++ L +++ NI+ ++C LG A P+ ++ FR E I Sbjct: 463 MLEILEKITEGKGEPGDLETLEKLAYNIKNSSLCGLGQTAPNPVLSTLRYFRHEYEAHIY 522 Query: 418 QYHRCN 423 +C Sbjct: 523 D-KKCP 527 >gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] Length = 624 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 170/426 (39%), Positives = 255/426 (59%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q+RI +N + + L D ++ G + + K L E + + EV SGLRGRGG Sbjct: 138 FYANQNRIALSNCGNIDPEDLDDYLAHGGYKALSKALLEMSPEEVCKEVTESGLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW F + +D Y++VN DE +PG DR IM +PH +IEG IA +A GA Sbjct: 198 GFPTGKKWEFAYREKAD-QKYVIVNGDEGDPGAFMDRSIMEGDPHRVIEGITIAGYATGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ Y GLLG + G+D D+++ GAGA++CGEETA Sbjct: 257 TKGYIYVRAEYPLAVKRLRKAINDAYDQGLLGEDILGSGFDFDLMIKEGAGAFVCGEETA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P KPPFPA GL+G PTT+NNVE++A VP I+ +GA W++ G EN+ Sbjct: 317 LMASIEGKRGMPNPKPPFPAQSGLWGKPTTINNVETLANVPQIILKGADWFTSLGTENSP 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+I+G V +E M +T EL+ GGI+ AV GG S CL Sbjct: 377 GTKTFAITGDVANTGLIEVPMGMTLRELVYDIGGGIKNNNK-FKAVQIGGPSGGCLTEEH 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MD+D L+E+G+ +G+ ++VMD +T +++ F ++ESCG+C CREGT Sbjct: 436 L-DMPMDFDSLQEVGAMIGSGGLVVMDENTCMVEVARFFMEFTQNESCGKCVLCREGTKQ 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++++ER+V+G ++DLL E++ ++ ++C LG A P+ +K FR E + Sbjct: 495 MLKILERIVEGKGTMEDLDLLEELALAVKDGSLCGLGKTAPNPVLTTLKYFRDEYEAHVK 554 Query: 418 QYHRCN 423 +C Sbjct: 555 D-KKCP 559 >gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] Length = 593 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 156/421 (37%), Positives = 244/421 (57%), Gaps = 6/421 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++++ ++R + ++K L E + I++E+K SGLRGRGGA Sbjct: 108 FYQKQLRIVLRNCGVINPENINEYIARDGYLALEKALFELTPEQIVDEIKKSGLRGRGGA 167 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K D Y+V NADE +PG DR + +PH++IE +I AIGA Sbjct: 168 GFPTGLKWEAGMKASGD-VKYVVCNADEGDPGAYMDRSTIEGDPHSIIEAMIICGKAIGA 226 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H F+Y+R E+ + L+ A+ + + +GLLG N G+D DI + GAGA++CGEETA Sbjct: 227 HQGFVYIRAEYPLAIDRLRIAMAQAHENGLLGKNILGSGFDFDIEIRLGAGAFVCGEETA 286 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G P KPPFPA GL+G PT +NNVE+ A +P IL +GA W++ G ++++ Sbjct: 287 LLRSIEGQRGMPTPKPPFPAQCGLWGKPTVINNVETWANIPVILTKGADWFNKIGTDDSK 346 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M T E+I + GGI+ V GG S + Sbjct: 347 GTKVFALTGKVNNSGLVEVPMGTTLREIIFEIGGGIK-NGKKFKGVQTGGPSGGIITEEH 405 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+ L ++GS +G+ +IVMD ++ F ESCG+C+PCR GT Sbjct: 406 L-DTPIDFGALIKLGSMMGSGGMIVMDEDDCVVDVAKFYMEFCVDESCGKCSPCRIGTRQ 464 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++E++ +G + ++ L ++ + ++ ++CALG +A P I+ F + I Sbjct: 465 MYTILEKISRGNGEMDDLQKLKDIGQAMKTSSLCALGQSAPNPTLSTIRKFEQEYIDHIR 524 Query: 418 Q 418 Sbjct: 525 N 525 >gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] Length = 600 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ G ++ K L +I+E+K SGLRGRGG Sbjct: 113 FYKKQKRISLKNCGHIDPEDIDEYIALGGYEAAGKALTLMEPQGVIDELKESGLRGRGGG 172 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F SD Y++ NADE +PG DR ++ +PH +IEG +IA++AIGA Sbjct: 173 GFPTGLKWQFARNTESD-KKYVICNADEGDPGAFMDRSLLEGDPHVIIEGMMIAAYAIGA 231 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ L+ A+ + GLLG N G+D + + GAGA++CGEETA Sbjct: 232 DEGYVYVRAEYPLAITRLEKAIKDAEEYGLLGENIFNSGFDFKLHIKKGAGAFVCGEETA 291 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P+ +PP+P+ GL+G PT +NNVE+ A VP I+ G+ +S G E++ Sbjct: 292 LMNSIEGKRGMPKPRPPYPSVSGLWGKPTNINNVETFANVPFIINEGSEAFSSIGTESSA 351 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I + GG+ AV GG S CLP Sbjct: 352 GTKVFALTGKINNTGLVEVPMGTTLREVIFEIGGGLDKN-KKFKAVQTGGPSGGCLPEEY 410 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD + ++ F + ESCG+CTPCREGT Sbjct: 411 L-NLPIDYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQSESCGKCTPCREGTKR 469 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ G ++ +I+LL E+ +I+ ++C LG +A P+ I +FR E I Sbjct: 470 MLEILNRITTGEGREGDIELLEELGDHIKSTSLCGLGKSAPNPVLSTITHFRKEYEAHIH 529 Query: 418 QYHRCN 423 + + C Sbjct: 530 KQN-CP 534 >gi|71402029|ref|XP_803973.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70866690|gb|EAN82122.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 484 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 267/424 (62%), Positives = 321/424 (75%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G ++ + RG W +L KG DW+I E+KASGLRGRGGAGF Sbjct: 23 LKDQDRIFLNLYNDFGTDITSAERRGDWYRTKDLLLKGHDWVIAEMKASGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPKV D YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 83 SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGEF E S++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG G+PRLKPPFPANVGLYGCPTTV N E+++V PTILRRG W+S FGR+NN G Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNAETVSVSPTILRRGPQWFSSFGRKNNAGV 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVE+ MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M R V G A+K EI + +VSK +EGRTICAL AAAWP+QGL ++F P++EERI++Y Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442 Query: 420 HRCN 423 N Sbjct: 443 WEAN 446 >gi|188593015|emb|CAQ55523.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei TREU927] Length = 496 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 264/424 (62%), Positives = 320/424 (75%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G + + RG W +L KG DW+INE+KASGLRGRGGAGF Sbjct: 35 LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 95 SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVEE MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LKE +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+ E+ + +VSK +EGRTICAL AAAWP+QGL ++F PL++ERI++Y Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454 Query: 420 HRCN 423 N Sbjct: 455 WEAN 458 >gi|72388848|ref|XP_844719.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei TREU927] gi|62176128|gb|AAX70246.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei] gi|70801253|gb|AAZ11160.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 496 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 264/424 (62%), Positives = 320/424 (75%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLY G + + RG W +L KG DW+INE+KASGLRGRGGAGF Sbjct: 35 LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A Sbjct: 95 SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGEF E ++ A+ E YA G LG N+ GYD D+ + GAGAYICGEETA++ Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF I GHVN PCTVEE MSI +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LKE +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++M+R V G A+ E+ + +VSK +EGRTICAL AAAWP+QGL ++F PL++ERI++Y Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454 Query: 420 HRCN 423 N Sbjct: 455 WEAN 458 >gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] Length = 595 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 153/426 (35%), Positives = 230/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + G + + K+L E D +I + SGLRGRGGA Sbjct: 109 FYKKQHRIALRNCGVINPEEIEEYIGTGGYQALGKVLTEMTPDEVIQVLLDSGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + +D Y+ NADE +PG DR ++ +PH L+E IA +AIGA Sbjct: 169 GFPTGLKWKLASQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMTIAGYAIGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ LLG + G+ +I + GAGA++CGEETA Sbjct: 228 SQGYIYVRAEYPIAVQRLKIAIEQARKMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ G W++ G E ++ Sbjct: 288 LMVSIEGNRGEPRPRPPFPAQKGLFGKPTILNNVETYANIPQIILNGPEWFASMGTEKSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G ++ VE M T E+ + GG A GG S C+P Sbjct: 348 GTKVFALGGKIHNTGLVEVPMGTTLREI-IEEIGGGIPNGKKFKAAQTGGPSGGCIPVEH 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD + ++ F ESCG+CTPCR GT Sbjct: 407 Y-DIPIDYDNLISIGSMMGSGGLIVMDETDCMVDIAKFFLEFTVEESCGKCTPCRIGTKR 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++++ KG A ++D L E+ ++ + C LG A P+ +K FR I Sbjct: 466 MHEILDKITKGQATLEDLDRLEELCYYVKENSACGLGQTAPNPVLSTLKFFRDEYNAHIV 525 Query: 418 QYHRCN 423 C Sbjct: 526 D-KTCP 530 >gi|269958707|ref|YP_003328494.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel] gi|269848536|gb|ACZ49180.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel] Length = 430 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 261/422 (61%), Positives = 319/422 (75%), Gaps = 2/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +D +FTNL G + L + +RG WD +ILE G D II EVK SGLRGRGGAGF Sbjct: 1 MKSEDAVFTNLAGRECPYLEAARARGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW FMPK RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G Sbjct: 61 TGVKWGFMPKARPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A++Y+RGEF E L A+DE Y GL+G N+ GYD+DI +H GAGAYICGEE+A L Sbjct: 121 AYVYIRGEFYNEYLVLSRALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PRLKPPFPA VGLYGCPTTVNN+E++AVV I+RRG+ W++ G+ NN GT Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTVNNIETVAVVGDIMRRGSQWFASLGKPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVVGGWDNLLAVIPGGSSVPMLPKSICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M+++V G A+ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++E+RI Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRIGNK 420 Query: 420 HR 421 + Sbjct: 421 GK 422 >gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] Length = 584 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 ++ Q RI N + + + + ++R + +K+L + +I+ +K SGLRGRGGA Sbjct: 98 LMKKQKRIVLRNCGSINPEEIDEYIARDGYKATEKVLTTMTDEEVIDVIKVSGLRGRGGA 157 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ + +D Y+V NADE +PG DR ++ +PH+L+EG +I +A+GA Sbjct: 158 GFPTWFKWNAARQNKAD-QKYIVCNADEGDPGAFMDRAVLEGDPHSLLEGMIIGGYAMGA 216 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IYVR E+ + L+ A+ + G LG N G+D DI + GAGA++CGEETA Sbjct: 217 TEGVIYVRAEYPLAIKRLEIAIAQAKERGYLGKNIFSSGFDFDIRIKEGAGAFVCGEETA 276 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A V I+ G + G + + Sbjct: 277 LIASLEGERGMPRLKPPFPAQKGYWQKPTNINNVETYANVAWIMLNGGDTFGSMGTKTSN 336 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M I+ E+I GGI+ + AV GG S C+PA Sbjct: 337 GTKVFALAGKIKKGGLVEVPMGISLREVIYDIGGGIKEDKE-FKAVQMGGPSGGCIPAS- 394 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + + G+ +G+ +IVMD +T ++ F + ESCG+C CR GT Sbjct: 395 LIDTPVDYENINKTGAIVGSGGMIVMDETTCMVDMARYFLDFTRKESCGKCNYCRIGTKR 454 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G + +I+LL E++ ++ +C LG A P+ +K FR E+ I Sbjct: 455 MLEILERITNGEGKDGDIELLEELAYKVKDGAMCGLGQTAPNPVITTLKYFRHEYEDHIY 514 Query: 418 QYHRCN 423 +C Sbjct: 515 N-KKCT 519 >gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479] gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479] Length = 573 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 231/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + G + + K+L E D +I + SGLRGRGGA Sbjct: 87 FYKKQHRIALRNCGVINPEVIEEYIGTGGYQALGKVLTEMTPDDVIQVLLDSGLRGRGGA 146 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 147 GFPTGLKWKLAKGNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHAVLEAMTIAGYAIGA 205 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ LLG + G+ +I + GAGA++CGEETA Sbjct: 206 SQGYIYVRAEYPIAVQRLKIAIEQAREMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETA 265 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ G W++ G E ++ Sbjct: 266 LMVSIEGNRGEPRPRPPFPAQKGLFGKPTILNNVETWANIPQIILNGPEWFASMGTEKSK 325 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G ++ VE M T E+ + GG A GG S C+PA Sbjct: 326 GTKVFALGGKIHNTGLVEVPMGTTLREI-IEEIGGGIPNGKKFKAAQTGGPSGGCIPAEH 384 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 385 -FDIPIDYDNLVAIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKR 443 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ KG A ++D L E+ I+ + CALG A P+ ++ FR I Sbjct: 444 MLEILEKITKGQATMADLDKLEELCYYIKANSACALGQTAPNPVLSTLQYFRDEYVAHIV 503 Query: 418 QYHRCN 423 C Sbjct: 504 D-KTCP 508 >gi|222099432|ref|YP_002534000.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM 4359] gi|221571822|gb|ACM22634.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM 4359] Length = 545 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 172/423 (40%), Positives = 253/423 (59%), Gaps = 6/423 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 +++ RI N+ + + + ++R + + K L+ + II E+K SGLRGRGGAGF Sbjct: 107 SEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMKPEEIIEEIKRSGLRGRGGAGFP 166 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F K SD Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA Sbjct: 167 TGLKWEFTYKASSD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGARKG 225 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E L+ A+++ Y G LG N G+ D+ + GAGAY+ GEETAL+E Sbjct: 226 YIYIRGEYYSSIEILKRAIEQAYEYGFLGENILGTGFSFDLKIRLGAGAYVAGEETALIE 285 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GTK Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIILNGADWFRKFGTESSPGTK 345 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G+V VE M +T +LI K GG+ G L V GGS+ + ++ Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGVEKG-KRLKLVQTGGSAGTFIGPDKL-D 403 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + G LG+ ++V D S + + F++HESCG+CTPCREGT + Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADESHCAVDLALTVMRFFEHESCGKCTPCREGTRIAVE 463 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ +G +K ++DLL +V++N + C LG + P+ ++ NF I + Sbjct: 464 ILERISRGEGRKEDLDLLRKVAENAGETSFCGLGQSIPVPLLSIVNNFEDEFRAHI-ESK 522 Query: 421 RCN 423 C Sbjct: 523 ECP 525 >gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] Length = 630 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ + + K L D ++ EV SG+RGRGGA Sbjct: 144 FYRKQKRIALRNCGVIDPEDIEEYIATDGYQALYKALTSMTPDEVVKEVLDSGIRGRGGA 203 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW F D Y+ NADE +PG DR I+ +PH +IE IAS+A+GA Sbjct: 204 GFPTGRKWMFTKDAPGD-VKYVACNADEGDPGAFMDRSILEGDPHAVIEAMTIASYAVGA 262 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H ++YVR E+ LQ A+D+ GLLG N G+D DI + GAGA++CGEETA Sbjct: 263 HQGYVYVRAEYPVAVNRLQIALDQAREYGLLGKNILGTGHDFDIEIRLGAGAFVCGEETA 322 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G+PR +PPFPA GL+G PT +NNVE+ A + I+R+GA+WYS G E ++ Sbjct: 323 LLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQIIRKGAAWYSAMGTEKSK 382 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + VE M T E+ + GG A GG S C+PA Sbjct: 383 GTKVFALGGKITNVGLVEIPMGTTLREI-IEEIGGGIPDGKAFKAAQTGGPSGGCIPAQH 441 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 442 I-DTPIDYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNFTVDESCGKCTPCRVGTRK 500 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++++E++ G + +++ + +++ +++ ++CALG +A P+ ++ F I Sbjct: 501 LLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPNPVLSTLQYFGDEYLAHIK 560 Query: 418 QYHRCN 423 + +C Sbjct: 561 E-KKCP 565 >gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] Length = 596 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + ++++ + + K+L +I EVK SGLRGRGG Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIEEVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+++ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W+S G E ++ Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD T ++ F ESCG+C PCR GT Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ I+ FR E I Sbjct: 467 MLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 599 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 165/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T+Q RI T NL + S+ + ++R + + K+L E G D +I ++ S L+GRGGA Sbjct: 111 FFTEQVRIATRNLGVIDPLSIDEYIARDGYFALHKVLFEIGIDDVIEILRKSELKGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T MKW F K D Y++ NADE +PG DR ++ +PH+++E IA+ +GA Sbjct: 171 GFPTWMKWDFTKKAEGD-TKYVICNADEGDPGAFMDRAVLEGDPHSIVEAMTIAARVVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E L A+ G LG N + D+ + GAGA++CGEETA Sbjct: 230 QKGFVYVRAEYPLAIERLTHAMKMAREYGFLGENILGTDFSFDLEIRIGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR+KPPFPAN GL+ PT +NNVE+ A +P I+ G W+S FG E +R Sbjct: 290 LINSIEGKRGIPRVKPPFPANKGLWQKPTLLNNVETFANIPPIINNGGEWFSQFGVEGSR 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G+V VE M IT +LI + GG+ G L A+ GG S C+P Sbjct: 350 GTKVFALAGNVKNTGLVEVPMGITLRKLIFEIGGGVP-GGKKLKAIQTGGPSGGCIPLE- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + YD +K++G+ +G+ +IVMD + ++ F ESCGQCTPCR+GT Sbjct: 408 LIDTPITYDNMKKLGTIIGSGGMIVMDEDSCMVDVAKYFLEFTVEESCGQCTPCRDGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G ++ LL ++ +NI ++C LG A P+ ++ F E + Sbjct: 468 MLEILERITSGEGTMEDLQLLKDLGENIMATSLCGLGQTAPQPVISTMRYFWNEYEAHVK 527 Query: 418 QYHRCN 423 RC Sbjct: 528 D-GRCP 532 >gi|56416878|ref|YP_153952.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. St. Maries] gi|222475243|ref|YP_002563659.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str. Florida] gi|255003227|ref|ZP_05278191.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Puerto Rico] gi|56388110|gb|AAV86697.1| NADH dehydrogenase chain F [Anaplasma marginale str. St. Maries] gi|222419380|gb|ACM49403.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str. Florida] Length = 430 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 265/422 (62%), Positives = 317/422 (75%), Gaps = 2/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +D FTNL G + L + RG WD +ILE G D II EVK SGLRGRGGAGF Sbjct: 1 MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KWSFMPK RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G Sbjct: 61 TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L A+DE Y GL+G N+ GYD+DI +H GAGAYICGEE+A L Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV I+RRG+ W+S GR NN GT Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M+++V G A+ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++E+RI Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRIGNK 420 Query: 420 HR 421 + Sbjct: 421 GK 422 >gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] Length = 596 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + ++++ + + K+L +I EVK SGLRGRGG Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+++ GLLG N G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W+S G E ++ Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD T ++ F ESCG+C PCR GT Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ I+ FR E I Sbjct: 467 MLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|91761992|ref|ZP_01263957.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique HTCC1002] gi|91717794|gb|EAS84444.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique HTCC1002] Length = 443 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 253/416 (60%), Positives = 320/416 (76%), Gaps = 1/416 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIF NLY +G + S +RG W + +I++KGR+WII EVK+S LRGRGGAGF Sbjct: 1 MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF PK RPHYLV+N DESEPGTCKDRDI+R EP LIEGC+IAS+A+ AH Sbjct: 61 PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPQKLIEGCLIASYAVQAHV 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ + + LQ A+DE Y L+G N+ G+D+DI +H+GAGAYICGEETALL Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G W++ G+ N GT Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISG+VN PC VEE MSI+ ELIE H GG+ GGWDNL AVIPGGSS+P +P Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L SGLGTA ++V++ DIIK + R++ FYKHESCGQCTPCREG+GWM Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 R++ER+ KG A K E+++L +V+ I G TICA G+ ++WP+QGL+++FR IE+R Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEKR 416 >gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] Length = 628 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ + + K+L ++ EVK +GLRGRGG Sbjct: 142 FFRKQQRIALRNCGTIDPEDIDEYIAMNGYKALHKVLTTMEPAQVVAEVKEAGLRGRGGG 201 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K + P Y++ NADE +PG DR I+ +PH+++EG IA +AIGA Sbjct: 202 GFPTGIKWETAAKQQTG-PKYMICNADEGDPGAFMDRSILEGDPHSVLEGMAIAGYAIGA 260 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ +QAA+ + GLLG + G+ DI V GAGA++CGEETA Sbjct: 261 NHGFIYVRAEYPIAVRRVQAAIKQARDYGLLGEDLFGTGFSFDISVRLGAGAFVCGEETA 320 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P KPPFPA GL+G PT +NNVE++A VP I+ +GASWY+ G E ++ Sbjct: 321 LMNSVEGKRGMPNPKPPFPAVSGLWGQPTVINNVETLANVPIIMLKGASWYASIGTEKSK 380 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M IT ++I + GGI GG AV GG S CL + Sbjct: 381 GTKVFALGGKVVNTGLVEVPMGITLRDVIYEIGGGIPGG-KAFKAVQTGGPSGGCLTSEH 439 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD T ++ F + ESCG+C PCR GT Sbjct: 440 L-DRPIDYDTLLSLGSMMGSGGMLVMDEETCMVDVARYYLDFTRDESCGKCAPCRIGTKR 498 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++E++ +G +++ L ++S+ I+ ++C LG A P+ +K FR + Sbjct: 499 LLEILEKITEGKGTMEDLNALEDLSEQIKAASLCGLGQTAPNPVLSTLKYFREEYIAHVV 558 Query: 418 QYHRCN 423 +C Sbjct: 559 D-KKCP 563 >gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] Length = 625 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 162/425 (38%), Positives = 246/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + D+++ G ++ +K E + +I + S LRGRGGA Sbjct: 139 FYAKQTRLVLKNCGHIDAEHIEDALAVGAYEAFEKAVFEMTPEAVIKTITQSNLRGRGGA 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+ A Sbjct: 199 GFQTGRKWSQVAGQK-EKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + G+LG N G+ + ++ GAGA++CGE +A Sbjct: 258 QEGYIYVRAEYPLAVSRLRIAIRQAEELGILGDNILGTGFSFHLHINRGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+G PT +NNVE+ A VP I++ GA WY+G G + Sbjct: 318 LTASIEGKRGMPRVKPPRTVEKGLFGKPTVLNNVETYANVPMIVKHGADWYTGIGTPESP 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G+VN +E M IT E+I GGIR AV GG S CL Q Sbjct: 378 GTKAFALTGNVNNTGLIEVPMGITLREIIFDIGGGIR-DGKKFKAVQIGGPSGGCLTESQ 436 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + MD+D L ++G+ +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 437 L-DSKMDFDSLTKIGAMIGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G ++ +I+ L E++ IE +C LG +A P+ I+ FR EE I Sbjct: 496 MLEILERIVAGEGREGDIEELEELADMIENTALCGLGKSAPKPVISTIQAFREEYEEHIR 555 Query: 418 QYHRC 422 +C Sbjct: 556 D-KKC 559 >gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 597 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 167/426 (39%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + +++ ++ + ++K+L E + +I+ +K SGLRGRGG Sbjct: 111 FFNRQMRIALRNCGRINPEDINEYIAFDGYKALEKVLTEMTPEAVIDTMKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K +D Y+ NADE +PG DR ++ +PH++IE IA FAIGA Sbjct: 171 GFPTGVKWEFAAKQTAD-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMSIAGFAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ + LQ A+DE G+LG N G+ ++ + GAGA++CGEETA Sbjct: 230 TQGFIYVRAEYPIAVKRLQLAIDEAKEYGILGDNVLGTGHKFNLEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A VP I+ +GA W+SG G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWEKPTILNNVETYANVPVIILKGAEWFSGIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E++ GGI G A GG S C+PA Sbjct: 350 GTKVFALGGKINNTGLVEVPMGTTLREVVYDIGGGIPNG-KKFKAAQTGGPSGGCIPASH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+C PCR GT Sbjct: 409 L-DTPIDYDSLIALGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +I+ L ++KNI+ +C LG A PI +K FR E + Sbjct: 468 MLEILERITEGKGEAGDIEKLELLAKNIKASALCGLGQTAPNPILSTLKYFRDEYEAHVF 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile 630] gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-66c26] gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile CIP 107932] gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-63q42] gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile ATCC 43255] gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-76w55] gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-97b34] gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-37x79] gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-23m63] gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08] gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07] gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile QCD-32g58] gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit HymB-like [Clostridium difficile] gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08] gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07] Length = 628 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 140/428 (32%), Positives = 233/428 (54%), Gaps = 8/428 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + S+ + ++ + + K L +I EVK SGLRGRGGA Sbjct: 140 FYKKQLRIALKNCGLIDPDSIEEYIANDGYLALGKCLTSLTPQEVIAEVKTSGLRGRGGA 199 Query: 59 GFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 GF TG KW K + ++V NADE +PG DR ++ +PH+++E I +AI Sbjct: 200 GFPTGSKWEAASKNPAGPTDKKFVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAICGYAI 259 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175 G+ +IY+R E+ + E L+ A+ + GLLG N G++ + + +GAGA++CGE Sbjct: 260 GSDTGYIYIRAEYPKSIERLKVAIAQAEKYGLLGENILGTGFNFKLELKYGAGAFVCGEG 319 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EG++G+PR+K + GL+ PT +NNVE+ A +P I+ +G W++ G E+ Sbjct: 320 TALMHSIEGRRGEPRMKTYSSSKSGLWKSPTCLNNVETFANIPAIILKGGDWFANLGTED 379 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + GTK+F++ G V VE M T +++ + GGI AV GG S C+P Sbjct: 380 SSGTKVFALGGKVENVGLVEVPMGTTLRDIVFEIGGGIP-EGKKFKAVQTGGPSGGCIPT 438 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + +D+ L +GS +G+ ++V+D S ++ F ESCG+CTPCR GT Sbjct: 439 EHL-DTPIDFGSLSSIGSMMGSGGMLVLDESDCMVDIAKFFLEFTVEESCGKCTPCRIGT 497 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 ++ ++ ++ +G +++D L +++ I+ ++C LG AA P+ ++ F+ Sbjct: 498 TRLLEILTKITEGNGTLQDLDDLENLAETIQTASLCGLGKAAPNPVLSTLQYFKDEYIAH 557 Query: 416 IDQYHRCN 423 + +C Sbjct: 558 VVD-KKCP 564 >gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] Length = 622 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 149/423 (35%), Positives = 241/423 (56%), Gaps = 6/423 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ G ++ ++K+L + ++ ++E+ SGLRGRGGA Sbjct: 136 FYEKQTRIVLKNCGHIDAEHIEEYIAVGGYEGLEKVLFDMTKEEGLDEILKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW+ + K + Y+V N DE +PG DR IM +PH +IEG +I ++ +GA Sbjct: 196 GFPTGRKWAEVAKQP-VKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMIIGAYLVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+ + GLLG N G++ + ++ GAGA++CGE +A Sbjct: 255 QNGYIYVRAEYPLAVERLKIAIAQAEERGLLGDNILGSGFNFRLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP A GL+ PT +NNVE+ A VP I+ G+ WY GFG E + Sbjct: 315 LTASIEGNRGMPRVKPPRSAEKGLFERPTVLNNVETYANVPMIIANGSDWYRGFGTEGSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G VN +E M T E++ GG++ AV GG S CL + Sbjct: 375 GTKAFALTGSVNNTGLIEVPMGTTLREIVYDIGGGVKDNVP-FKAVQIGGPSGGCL-VEK 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D+D +K++ + +G+ ++VMD ++ ++ F + ESCG+CTPCR GT Sbjct: 433 HLDLPLDFDSVKKLNAIMGSGGLVVMDENSCMVDVARFFMSFTQRESCGKCTPCRIGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ +G ++D L E + + ++C LG +A P+ ++ FR EE I Sbjct: 493 MLEILDKITEGKGTLEDLDKLEETANTVRTMSLCGLGKSAPLPVISTLELFRHEYEEHIV 552 Query: 418 QYH 420 Sbjct: 553 DGK 555 >gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] Length = 659 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 166/425 (39%), Positives = 245/425 (57%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI N + + L + ++R + K L R +I EVK SGLRGRGGAG Sbjct: 174 FYARQHRIVLANCGHINPEDLGEYLARQGYRGFLKALAMERAAVIAEVKRSGLRGRGGAG 233 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW F + Y+V NADE +PG DR ++ +PH ++EG ++A +AIGA Sbjct: 234 FLTGQKWEFTADAPGE-EKYIVCNADEGDPGAFMDRSVLEGDPHAVLEGMLVAGYAIGAR 292 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ L+ A+ + A GLLG N G+ + V GAGA++CGEETAL Sbjct: 293 EGYIYVRAEYPLAIRRLRTAIAQAEACGLLGENILASGFSFRVYVKAGAGAFVCGEETAL 352 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L S+EG +G PR++PP+PA GL+ PT +NNVE++A +P ILRRGA WY+ G ++G Sbjct: 353 LTSIEGNRGMPRVRPPYPAVKGLWSKPTNINNVETLANIPHILRRGADWYAAMGVGRSKG 412 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 +K+F+++G VN VE M ++ E+I GGI G AV GG S CLP + Sbjct: 413 SKVFALTGKVNNTGLVEVPMGLSLREIIFAIGGGI-QGGKAFKAVQIGGPSGGCLPES-L 470 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ L E G+ +G+ ++VMD ST ++ F + ESCG+C PCREGT M Sbjct: 471 LDTPVDYESLLEAGAMVGSGGLVVMDESTCMVDIARYFLNFTQQESCGKCAPCREGTKRM 530 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ R+ +G + +++ L +++ I+ ++C LG +A P+ ++ FR E I Sbjct: 531 LEIVTRITEGEGRLEDLEALEKLAAVIKDTSLCGLGQSAPNPVLTTLRYFRDEYEAHI-H 589 Query: 419 YHRCN 423 RC Sbjct: 590 DQRCP 594 >gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 619 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 248/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q + N + S+ + ++ G ++ ++K+L + +I EVK SGLRGRGG Sbjct: 133 FYKKQVKTAIANCGIINPDSIEEYIAYGGYEALEKVLSSMSQTQVIEEVKKSGLRGRGGG 192 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K + Y++ NADE +PG DR ++ +PH ++EG I +AIGA Sbjct: 193 GFPTGLKWEFAYKSPGE-KKYVICNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAIGA 251 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + +GLLG N G++ + + GAGA++CGEETA Sbjct: 252 DEGYIYVRAEYPLAIKRLENAIAQAEEAGLLGENILGSGFNFKLRIKAGAGAFVCGEETA 311 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR++PPFPA GL+ PT NNVE+ A +P I+R+GA W++G G E ++ Sbjct: 312 LINSIEGKRGMPRVRPPFPAQSGLWNKPTNNNNVETYANIPGIIRKGADWFAGMGTEKSK 371 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G+K+F+++G VN E + IT E+I GGI+ AV GG S C+P Sbjct: 372 GSKVFALTGKVNRTGLAEVPIGITIREIIFDIAGGIQNN-KKFKAVQIGGPSGGCIPEEY 430 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT Sbjct: 431 L-DTPVDYDSLTALGAMMGSGGLVVMDETTCMVDVARFFLNFTQKESCGKCTPCREGTKR 489 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ G + +ID L +S I+ +C LG +A P+ ++ FR E+ I Sbjct: 490 MLEILNRICDGKGKPEDIDTLERLSNVIKSTALCGLGQSAPNPVLATLRYFRNEYEDHI- 548 Query: 418 QYHRCN 423 +C Sbjct: 549 HNKKCT 554 >gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 615 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 155/418 (37%), Positives = 240/418 (57%), Gaps = 6/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + +S+ ++R + + L E + I+ E++ SGLRGRGGAGF +KW Sbjct: 139 VLRNKGIIDPESIDQYIARDGYFAAARALTEMAPEDILQEMQKSGLRGRGGAGFPVHLKW 198 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F + S Y++ NADE +PG DR I+ PH+++EG +IA+ I A FIY R Sbjct: 199 KFAYRETSG-VKYVLCNADEGDPGAFMDRSILEANPHSVLEGMLIAARTINADQGFIYCR 257 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E +Q A+D GLLGS+ G+ D+ ++ GAGA++CGEETAL+ S+EG Sbjct: 258 TEYPLALERVQIAIDRAREYGLLGSDILGSGFGFDLEIYQGAGAFVCGEETALMRSIEGG 317 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA GL+ PT +NNVE++A VP I++ G WY+G G +++GTK+F++S Sbjct: 318 RGMPRPRPPFPAQKGLWDRPTVLNNVETLANVPLIIQAGGDWYAGVGTRHSKGTKVFALS 377 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V VE M + +I GGI G + AV GG S C+PA + +DY Sbjct: 378 GDVRNIGLVEVPMGTSLRSIIYDIGGGIPGKRE-FKAVQLGGPSGGCVPAEYL-DLPVDY 435 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + G+ +G+ +IVMD+ T ++ F + ESCG+CTPCREGT ++ +++R+ Sbjct: 436 EAISRAGAIMGSGGMIVMDQRTCMVDMARFFMDFVQEESCGKCTPCREGTMRILEILDRI 495 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 G +++ L ++S I ++C LG A P+ +K F E+ I + +C Sbjct: 496 RAGEGVIQDLWELEDLSATIRDSSLCGLGQTAPNPVLSTLKYFPKEYEDHI-RNKKCP 552 >gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 623 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 154/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K++ +I+EV SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGKIDAESIEEYIAVGGYQALAKVMGSMSPQEVIDEVTKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + ++ Y+V N DE +PG D +M +P+ +IEG IA++A+GA Sbjct: 196 GFPAGKKWSQVARQA-EKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ GLLG N G + + ++ GAGA++CGE +A Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEKYGLLGDNILNSGVNFHLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+G PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 315 LTASIEGNRGMPRVKPPRTVEKGLWGKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M T +I GG++ G V GG S CL Q Sbjct: 375 GTKTFSLTGSIENTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLILDQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A +D+D +K++ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 434 L-DAPLDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 493 MLEILERIVDGKGEMSDLDELEELANMVQNMALCGLGKSAPLPVISTLKRFRNEYEEHIR 552 Query: 418 QYHRC 422 +C Sbjct: 553 D-KKC 556 >gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] Length = 596 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 163/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + ++++ + + K+L +I+EVK SGLRGRGG Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIDEVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+++ GLLG + G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W+S G E ++ Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD T ++ F ESCG+C PCR GT Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ V++++ G ++ +I+ L E++K I+ +C LG A P+ I+ FR E I Sbjct: 467 MLEVLDKITSGKGEEGDIERLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|160872482|ref|ZP_02062614.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli] gi|159121281|gb|EDP46619.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli] Length = 426 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 216/421 (51%), Positives = 277/421 (65%), Gaps = 7/421 (1%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTG 63 D F L+ + SL + G ++ ++IL++ + II E+K S LRGRGGAGF TG Sbjct: 4 DICFRTLHFDKPWSLENYRRVGGYEVWERILKEKTPPEQIIAELKRSCLRGRGGAGFPTG 63 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+ + Y++ N+DE EPGTCKDRDI+R PH LIEG IA + +GA + Sbjct: 64 LKWSFITRNAPG-QKYILCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYVMGATVGYN 122 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE+ E + A+ E Y +G LG N G+D + H GAGAYICGEETAL+ESL Sbjct: 123 YIRGEYDEPFERCETALAEAYEAGWLGENIIGSGFDFQLYNHRGAGAYICGEETALMESL 182 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGKKG PR KPPFPAN GLYGCPTT+NN E++A VP IL++G W+ G+ NN G KLF Sbjct: 183 EGKKGFPRFKPPFPANYGLYGCPTTINNTETLASVPVILQKGGQWFLELGKPNNGGCKLF 242 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S++GHVN P E + I F EL+ G L AVIPGGSS+P L A M Sbjct: 243 SVTGHVNKPGNYEVPLGIPFKELLALAGGMKAN--RKLKAVIPGGSSMPVLTAEAMWNTA 300 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + + GS LG+ AVIVMD +T ++K + R++ FYK ESCGQCTPCREGTGWM RV+ Sbjct: 301 MDYDSIIKAGSMLGSGAVIVMDETTCMVKVLTRIAHFYKEESCGQCTPCREGTGWMWRVL 360 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ +G AQ+ ++DLL V+ I G TICALGDAAA P+Q IK+FR E I ++ RC Sbjct: 361 HRIEQGHAQRSDLDLLESVAGRIMGHTICALGDAAAMPVQSFIKHFRSEFIEHI-EHKRC 419 Query: 423 N 423 Sbjct: 420 P 420 >gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 596 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + ++++ + + K+L +I+EVK SGLRGRGG Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIDEVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+++ GLLG + G+D DI + GAGA++CGEETA Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W+S G E ++ Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD T ++ F ESCG+C PCR GT Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ I+ FR E I Sbjct: 467 MLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + +C Sbjct: 527 E-KKCP 531 >gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 597 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 165/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + +++ ++ + ++K+L E + +I+ +K SGLRGRGG Sbjct: 111 FFNRQMRIALRNCGRINPEDINEYIAFDGYKALEKVLTEMTPEAVIDTMKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKW F K ++ Y+ NADE +PG DR ++ +PH++IE IA FAIGA Sbjct: 171 GFPTGMKWDFAAKQTAE-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMSIAGFAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + LQ A+D+ G+LG N G+ ++ + GAGA++CGEETA Sbjct: 230 TQGYIYVRAEYPIAVKRLQMAIDQAVEYGILGDNVLGTGHKFNLEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A VP I+ +GA W+SG G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTILNNVETYANVPVIILKGADWFSGIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E++ GGI G A GG S C+P Sbjct: 350 GTKVFALGGKINNTGLVEVPMGTTLREVVYDIGGGIPKG-KKFKAAQTGGPSGGCIPTEH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+C PCR GT Sbjct: 409 L-DTPIDYDSLIALGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +I+ L ++KNI+ +C LG A PI +K FR E + Sbjct: 468 MLEILERITEGKGEAGDIEKLELLAKNIKASALCGLGQTAPNPILSTLKYFRDEYEAHVF 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] Length = 650 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 167/428 (39%), Positives = 247/428 (57%), Gaps = 7/428 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q+R I + + +S + + ++K+L + + +I EVK SGLRGRGGA Sbjct: 164 FYAKQNRVILKKCGLIDPERVSQYFAHQGYRALEKVLQKMKPEEVIEEVKQSGLRGRGGA 223 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSF D YL+ NADE +PG DR ++ +PH +IEG +I ++AIGA Sbjct: 224 GFPTGLKWSFCRAAEGD-KKYLICNADEGDPGAFMDRSVLEGDPHAVIEGMLIGAYAIGA 282 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ E L+ A+ + GLLG N G+ + + GAGA++CGEETA Sbjct: 283 AEGYIYCRAEYPLAVERLKTAIGQAEKYGLLGKNILNSGFHFKLRIKEGAGAFVCGEETA 342 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR++PP+PA GL+G PT +NNVE+ A VP I+ GA WYS FG E ++ Sbjct: 343 LIASIEGQRGMPRVRPPYPAVKGLWGKPTNINNVETWANVPHIILNGAGWYSQFGTEKSK 402 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M IT E+ GG G A GG S CLP Sbjct: 403 GTKIFAMTGKVNNTGLVEVPMGITLREI-IFDIGGGIKGGKKFKAAQIGGPSGGCLPES- 460 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L +G+ +G+ + ++D +T ++ F ++ESCG+CTPCREGT Sbjct: 461 MLDIPVDFDSLGAVGAMVGSGGLTILDETTCMVDMARYFLNFTQNESCGKCTPCREGTKR 520 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ KG ++ +++ L ++ I ++C LG A P+ IK FRP E I Sbjct: 521 MLEILVRITKGEGKEGDLENLERLAGVIRKTSLCGLGQTAPNPVSATIKYFRPEYEAHIK 580 Query: 418 QYHRCNFQ 425 + RC Sbjct: 581 E-KRCPAH 587 >gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC 51170] gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC 51170] Length = 512 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 164/422 (38%), Positives = 244/422 (57%), Gaps = 7/422 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q +I N + +S+ + ++RG + + K L E R II + S LRGRGGAGF T Sbjct: 29 QVKIALRNCGVIDPRSIDEYIARGGYFALHKALSEMDRKEIIEIISNSMLRGRGGAGFPT 88 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW D Y++ NADE +PG DR I+ ++PH+++E IA +AIG+ F Sbjct: 89 GKKWQTAYDYDVD-KKYIICNADEGDPGAYMDRSILENDPHSVLEAMAIAGYAIGSDEGF 147 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + ESL+ A+ + G LG N G++ I + G+GA++CGE TAL+ES Sbjct: 148 IYVRAEYPKAVESLKYAIKDAEEKGFLGKNIMDSGFNFTIELRLGSGAFVCGESTALMES 207 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR+K A GL+ PT +NNVE++A V I+ GA WY G E + GTK+ Sbjct: 208 IEGKRGMPRVKIHRTAFRGLWQKPTVINNVETLANVAQIIINGADWYRSIGTEKSPGTKV 267 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+ G V +E M T E+I GGI G + L AV GG S C+PA + + Sbjct: 268 FSLVGDVKNSGLIEVPMGTTLREIIYDLGGGIEGDKE-LKAVQTGGPSGGCIPAKYL-DS 325 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ LKE+ S +G+ ++VMD +T ++ F ESCG+C PCREGT ++ + Sbjct: 326 SVDYETLKELNSIMGSGGMVVMDENTCMVDIARFFLDFTCDESCGKCVPCREGTKRILEI 385 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+V G + +ID L E+S+ + ++C LG +AA+P+ +K ++ + I H Sbjct: 386 LERIVAGKGKMEDIDRLEELSELVTEASLCGLGKSAAFPVISTLKYYKDEYIDHIKNKH- 444 Query: 422 CN 423 C Sbjct: 445 CP 446 >gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] Length = 594 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 158/424 (37%), Positives = 246/424 (58%), Gaps = 7/424 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 + R+ N + ++ D ++ + + K+L + + +I+EV SGLRGRGGAGF Sbjct: 110 AKEVRVVLRNCGVIDPNNIEDYIAEDGYMALAKVLSDMTPEQVIDEVTRSGLRGRGGAGF 169 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW F +D Y+V NADE +PG +R ++ +PH++IEG +IA++AIGA Sbjct: 170 LTGRKWQFCRNSQADM-KYIVCNADEGDPGAFMNRRVLESDPHSVIEGMIIAAYAIGARQ 228 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY R E+ ++L A+ + G LG N G+ D+ V GAGA++CGEETAL+ Sbjct: 229 GYIYCRAEYPLAVKTLNIAIKQAREFGFLGENILGTGFSFDLEVRQGAGAFVCGEETALM 288 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++G+PR +PPFPA GL+G PT +NNVE+ A VP I+ +GA W++ G E ++GT Sbjct: 289 ASIEGRRGEPRPRPPFPAVSGLWGKPTNINNVETYANVPQIILKGADWFASMGTEKSKGT 348 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K F+++G V + +E + IT E++ GGI+ A+ GG CLPA + Sbjct: 349 KTFALAGDVKHTGLIEVPLGITLREIVYDVGGGIKDD-KGFKAIQTGGPMGGCLPAEFL- 406 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ L + GS +G+ ++VMD T ++ F + ESCG+CTPCR GT ++ Sbjct: 407 DLPVDYESLTQAGSIMGSGGMVVMDEETCMVDIARFFMEFTQEESCGKCTPCRIGTRRLL 466 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ +G + +I+ L E+ I ++C LG A P+ +K FR E I + Sbjct: 467 EILTRICEGKGEDGDIERLEELCDQIRTASLCGLGQGAPNPVASTLKYFRHEYEAHIYE- 525 Query: 420 HRCN 423 RC Sbjct: 526 KRCP 529 >gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] Length = 574 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + G + + K+L E D +I + +GLRGRGGA Sbjct: 88 FYKKQHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGA 147 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + +D Y+ NADE +PG DR ++ +PH L+E IA +AIG+ Sbjct: 148 GFPTGLKWKLCKQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGS 206 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ E L+ A+ + LLG N G+D DI + GAGA++CGEETA Sbjct: 207 NQGYIYVRAEYPIAVERLKIAIQQAREMELLGKNIFGTGFDFDIDLRLGAGAFVCGEETA 266 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR +PPFPA GL+G P+ +NNVE+ A +P I+ G W++ G E ++ Sbjct: 267 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSK 326 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T +IE+ GGI A GG S C+PA Sbjct: 327 GTKVFALGGKINNTGLVEVPMGTTLRTVIEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 385 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD ++ F ESCG+CT CR GT Sbjct: 386 -FDIPIDYDNLISIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKR 444 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ KG A ++D L E+ ++ ++C LG A P+ + FR E I Sbjct: 445 MVEILTKITKGQAVMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIK 504 Query: 418 QYHRCN 423 + RC Sbjct: 505 E-KRCP 509 >gi|71906593|ref|YP_284180.1| NADH-quinone oxidoreductase, F subunit [Dechloromonas aromatica RCB] gi|71846214|gb|AAZ45710.1| NADH dehydrogenase subunit F [Dechloromonas aromatica RCB] Length = 442 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 217/414 (52%), Positives = 280/414 (67%), Gaps = 7/414 (1%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 L G SL D ++RG + + +IL + ++ +I+EVK S LRGRGGAGF TG+KWSFM Sbjct: 15 LDGDNSWSLKDYVARGGYAQLKRILDSKMTQEDVISEVKKSVLRGRGGAGFPTGLKWSFM 74 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 P+ Y+V N DE EPGT KDRDIMR+ PH +IEG IA++A+GA+ + YV GE Sbjct: 75 PRSFPG-DKYVVCNTDEGEPGTFKDRDIMRYNPHAVIEGMAIAAYAMGANRGYNYVHGEV 133 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 E + + A+D+ A+G +G N G++ ++ HHG GAYICGEETALLES+EGKKGQ Sbjct: 134 WLEYKRFEEALDQARAAGFIGQNILGSGFNFELFAHHGYGAYICGEETALLESIEGKKGQ 193 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFPA+ GLYG PTT+NN E+ A +P IL+ G + G+ NN GTKLFS+SGHV Sbjct: 194 PRFKPPFPASFGLYGKPTTINNTETFASIPFILKMGGEEFLNLGKPNNGGTKLFSVSGHV 253 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 N P E + F L+E CGG+RGG L AVIPGGSS P +PA + MDYD + Sbjct: 254 NRPGNYEIPLGTPFATLLEM-CGGMRGGRK-LKAVIPGGSSAPVMPADVIMDCTMDYDSI 311 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + GS LG+ AVIVMD + ++KA+ RLS FY ESCGQCTPCREGT WM +V+ R+ G Sbjct: 312 SKGGSMLGSGAVIVMDETVCMVKALDRLSFFYHEESCGQCTPCREGTAWMYKVVHRIENG 371 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + + ++DLL V NI GRTICALGDAAA+P+Q IK+F E I ++ C Sbjct: 372 LGKPEDLDLLNSVLGNIAGRTICALGDAAAFPVQSFIKHFGKEFEYHI-EHKTC 424 >gi|255994340|ref|ZP_05427475.1| protein HymB [Eubacterium saphenum ATCC 49989] gi|255993053|gb|EEU03142.1| protein HymB [Eubacterium saphenum ATCC 49989] Length = 593 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +T Q RI N + + + D +S G ++ L EK + +I E+K SGLRGRGGA Sbjct: 108 FITRQQRIVLRNCGLINPEKIEDYISEGGYEAARIALTEKTPEEVIEEIKKSGLRGRGGA 167 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ +D Y+V NADE +PG DR ++ +PH L+EG +I +AIGA Sbjct: 168 GFPTWFKWNAARSNEAD-QKYIVCNADEGDPGAFMDRSVLEGDPHALLEGMLIGGYAIGA 226 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IYVR E+ + L+ A+++ + LG N G+D D+ + GAGA++CGEETA Sbjct: 227 TKGVIYVRAEYPLAIKRLENAMEQARKANYLGDNILGSGFDFDLYIKAGAGAFVCGEETA 286 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PRLKPPFPA G + PT +NNVE++A V I++ G ++ FG ++ Sbjct: 287 LIASIEGERGMPRLKPPFPAQKGFWKKPTNINNVETLANVAWIIKNGGDKFAEFGLGESK 346 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + E + + ++I GGI+ AV GG S C+PA Sbjct: 347 GTKVFALAGKIKKGGLCEVPLGMPLRDVIYNIGGGIKNDRK-FKAVQMGGPSGGCIPAE- 404 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + Y+ + + G+ +G+ +IVMD T ++ F + ESCG+C CR GT Sbjct: 405 LIDTKVTYEDIVKTGAIVGSGGMIVMDEDTCMVDMARYFLDFTRKESCGKCIYCRLGTKR 464 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +I+LL E+S ++ ++C LG A P+ IK FR E+ I Sbjct: 465 MLEILERITQGKGKDGDIELLLELSNKVKEGSMCGLGQTAPNPVLTTIKYFRHEYEDHIY 524 Query: 418 QYHRCN 423 H+C Sbjct: 525 N-HKCT 529 >gi|296132535|ref|YP_003639782.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296031113|gb|ADG81881.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 634 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 146/421 (34%), Positives = 234/421 (55%), Gaps = 5/421 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 +Q + + + + ++ ++R + + K L ++ E+K + LRGRGGAGF TG Sbjct: 137 EQKIVLADCGLINPEDINQYLARDGYSALAKALSMKPAEVVAEIKDAKLRGRGGAGFPTG 196 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + S Y++ NADE +PG DR ++ PH +IEG +IA FA+GA + Sbjct: 197 VKWEICHQAVSP-EKYVICNADEGDPGAFMDRALLESNPHQVIEGLMIAGFAVGASKGYF 255 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ L+ A+++ G+LGS+ + DI + G+GA++CGEETAL+ S+ Sbjct: 256 YVRAEYPLAITRLRTALEQAREKGILGSSVLGSDFGFDIEIFQGSGAFVCGEETALIASM 315 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK G P +PPFPA GL G PT +NNV++++ VP I+R+G W+ G ++ GT +F Sbjct: 316 EGKPGIPNHRPPFPAVSGLRGKPTVINNVKTLSYVPHIIRKGVDWFKSVGTPDSPGTAVF 375 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G V E M T LI GI+ AV GG S CLP + Sbjct: 376 ALAGKVVSTGLAEVPMGTTLRTLIYDVGNGIKDD-KPFKAVQIGGPSGGCLPESSL-DLP 433 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L++ G+ +G+ ++V+ +++ F + ESCG+CT CR GT M+ ++ Sbjct: 434 IDFDSLQQAGAMMGSGGLVVLSEDDCMVEIARYFLEFTQKESCGKCTFCRLGTKQMLEIL 493 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + KG + +IDLL E+ ++I+ ++C+LG A P+ I+ FR E I + RC Sbjct: 494 TDITKGQGKPEDIDLLLELGEDIKAGSLCSLGKTAPNPVLTTIRFFRHEYEAHIQE-KRC 552 Query: 423 N 423 Sbjct: 553 P 553 >gi|256072407|ref|XP_002572527.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni] gi|238657687|emb|CAZ28759.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1), putative [Schistosoma mansoni] Length = 413 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 257/397 (64%), Positives = 313/397 (78%), Gaps = 1/397 (0%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 M RGHW +I+ KG DWII E+K SGLRGRGGAGF +GMKWSFM K RP YLV+N Sbjct: 1 MQRGHWYKTKEIVLKGSDWIIEEIKKSGLRGRGGAGFPSGMKWSFMNKPSDGRPKYLVIN 60 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A+IY+RGEF E ++Q A+ E Sbjct: 61 ADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANAAYIYIRGEFYNEASNMQLAIKEA 120 Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 Y +G LG N+ G++ D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA++GL+ Sbjct: 121 YEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADIGLF 180 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 GCPTTV NVE++AV PTI RRG W++ FGRE NRGTKLF+ISGHVN PCTVEE MSI Sbjct: 181 GCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTKLFNISGHVNNPCTVEEEMSIPM 240 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +LIE+H GG+ GGWDNLLAVIPGGSS P LP +MD+D L + SGLGTAA+IV Sbjct: 241 RDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICSTVLMDFDALVQANSGLGTAALIV 300 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 M+RS D++ I RL FY+HESCGQCTPCREG W+ ++M R VKG A K EID+++E+S Sbjct: 301 MNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWLSQIMTRFVKGNANKDEIDMIWEIS 360 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 K +EGRTICAL D AAWP+QGLI++FRP +E R +Y Sbjct: 361 KQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKY 397 >gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 598 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E +++ +K SGLRGRGG Sbjct: 111 FFKRQMRIALRNCGIINPENIDEYIAYDGYKALAKVLTELKPTDVVDTLKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K Y+ NADE +PG DR ++ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKQPEG-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+++ GLLG N + D+ + GAGA++CGEETA Sbjct: 230 NQGYIYVRAEYPIAVKRLQIAIEQAKEYGLLGKNIFGTDFSFDLEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ +GA W+S G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWEKPTILNNVETYANIPMIILKGAEWFSSIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E++ GGI A GG S C+PA Sbjct: 350 GTKVFAVGGKINNTGLVEIPMGTTLREVLYDIGGGIP-NGKKFKAAQTGGPSGGCIPASH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L ++GS +G+ +IVMD ++ F ESCG+C PCR GT Sbjct: 409 I-DTPIDYDSLIQLGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +I+ L ++KNI+ +C LG A P+ +K F+ + Sbjct: 468 MLEILERITEGKGEIGDIEKLEILAKNIKASALCGLGQTAPNPVLSTLKYFKDEYMAHVI 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 608 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 158/422 (37%), Positives = 246/422 (58%), Gaps = 6/422 (1%) Query: 4 DQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q+R N + +++ + G + + K + + +I EVK+SGLRGRGGAGF T Sbjct: 108 RQERFLLHNCGNIDPENIESYLDAGGYKGLAKAVAMKPEEVIAEVKSSGLRGRGGAGFPT 167 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 KW+F + Y++ NADE +PG DR I+ +PH+++EG +IA +AIGA + Sbjct: 168 HQKWTFARDAKGE-QKYIICNADEGDPGAFMDRSILESDPHSVLEGMMIAGYAIGASVGY 226 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ L+ A+ + LG+N G+D DI + GAGA++CGEETAL+ S Sbjct: 227 IYIRAEYPLAIRRLKIAIAQAKEHYYLGTNILNSGFDFDIKIREGAGAFVCGEETALIAS 286 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR +PPFPA GL+ PT++NNVE+ A VP IL +GA+ Y+ G E ++GTK+ Sbjct: 287 IEGKRGMPRFRPPFPAVSGLFASPTSINNVETFANVPQILAQGAAAYNVHGTEFSKGTKV 346 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G VN +E M ++ ++++ GGI AV GG S C+PA + Sbjct: 347 FALAGKVNRGGLIEVPMGMSINDIVFAVGGGI-STGKAFKAVQTGGPSGGCIPAE-LADT 404 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ LKE+G+ +G+ +++MD T ++ F + ESCG+CT CR GT M+R+ Sbjct: 405 AVDYESLKEIGAIMGSGGLLIMDEETCMVDVAKFFLTFTREESCGKCTFCRVGTEQMLRI 464 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+ +G + +ID L ++ I+ ++C LG P+ IK FR E + Sbjct: 465 LERITEGEGTEEDIDTLEDLGSKIKAGSLCGLGQTVPNPVLTTIKYFRDEYEAHVRD-KV 523 Query: 422 CN 423 C Sbjct: 524 CP 525 >gi|154249673|ref|YP_001410498.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154153609|gb|ABS60841.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 539 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 167/422 (39%), Positives = 253/422 (59%), Gaps = 5/422 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L + + N+ + +++ + ++R + + K L+ + +I E+K SGLRGRGGAGF Sbjct: 104 LKETRIVTRNIGVIDPRNIDEYIARDGYFALSKALKMTPEEVIKEIKDSGLRGRGGAGFP 163 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F K +D Y+V NADE EPGT KDR IM +PH++IE +IA +A+GA Sbjct: 164 TGLKWEFTAKTKAD-QKYIVCNADEGEPGTFKDRLIMEGDPHSVIEAMIIAGYAVGATKG 222 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E+L+ A+ + Y G LG + G++ D+ V GAGAY+CGEETALLE Sbjct: 223 YIYIRGEYYNSVENLKKAIKDAYEYGFLGEDILGSGFNFDLTVRLGAGAYVCGEETALLE 282 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPP+P GL+G PT +NNVE++A VP I+ GA W+ G N+ GTK Sbjct: 283 SIEGKSGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAQWFRSIGTPNSPGTK 342 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F + G VN VE M +T E++ GG++GG + L V GG + + ++ Sbjct: 343 VFCLVGDVNRRGMVELPMGVTVREVLYGFGGGVKGGRE-LKMVQTGGLAGTFIGPDKL-D 400 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DYD +K G LG+ ++ +D S ++ F++HESCG+CTPCREGT Sbjct: 401 VPLDYDSMKNYGVSLGSGVILAIDDSHCVVDIALNTMEFFRHESCGKCTPCREGTRLACE 460 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQY 419 ++E++ K A ++ L +++ + C LG + P+ LI NF+ + I D+Y Sbjct: 461 ILEKMTKFEATMDDLKYLEQIAILSADASFCGLGQSINVPLLSLINNFKEEFIQHIKDKY 520 Query: 420 HR 421 + Sbjct: 521 CK 522 >gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 147/425 (34%), Positives = 230/425 (54%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q +I N + +++ D + + +DK L+ + ++ +K SGLRGRGGAG Sbjct: 130 FYKKQKKIALRNCGIIDPENIDDYVLADGYTALDKALKMTPEEVVEIIKKSGLRGRGGAG 189 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + Y+V NADE +PG DR I+ +PH+++E + +AIGA Sbjct: 190 FPTGKKWEIALHNKAP-KKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAVCGYAIGAE 248 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +Y+R E+ + L A+ + G LG N ++ DI + +GAGA++CGEETAL Sbjct: 249 YGLVYIRAEYPNAMKILAKAIKDAKNHGFLGKNIYNTNFNFDIQLKYGAGAFVCGEETAL 308 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S++GK+G+P KPPFPA G PT VNNVE++A +P I+++GA W+ FG EN+ G Sbjct: 309 IRSMQGKRGEPVNKPPFPAERGYKNSPTNVNNVETLANIPVIIKKGAEWFRSFGTENSPG 368 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G +N +E M T E+I + GGI+ AV GG S CL + Sbjct: 369 TKVFALAGKINNTGLIEVPMGTTLREIIYEIGGGIK-NGKKFKAVQTGGPSGGCLTMDDL 427 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L GS +G+ +I+MD + F ESCG+CTPCR G + Sbjct: 428 -DTPIDFDNLVAKGSMMGSGGMIIMDEDNCMPAVAKFYLDFTVDESCGKCTPCRIGNKRL 486 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++R+ G + ++D L E+S I+ +C LG A P+ ++ F + Sbjct: 487 LEILKRITDGEGTEDDLDTLKELSLIIKDSALCGLGQTAPNPVLSTLEKFWDEYVAHVRD 546 Query: 419 YHRCN 423 +C Sbjct: 547 -KKCP 550 >gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 596 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 163/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + ++++ + + K+L +I EVK SGLRGRGG Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + P Y+V NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVIEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+++ GLLG + G+D DI + GAGA++CGEETA Sbjct: 229 NYGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G++G+PR +PPFPA G++ PT +NNVE+ A +P I+ GA W+S G E ++ Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWSKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E+I + GGI A GG S C+PA Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD T ++ F ESCG+C PCR GT Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G ++ +I+ L E++K I+ +C LG A P+ I+ FR E I Sbjct: 467 MLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526 Query: 418 QYHRCN 423 + +C Sbjct: 527 E-KKCP 531 >gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Halanaerobium praevalens DSM 2228] Length = 601 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ G ++ K+L E +++ VK SGLRGRGG Sbjct: 113 FYKKQQRIALANCGQIDPEAIDEYIALGGYEAAGKVLTEMDAQEVVDTVKDSGLRGRGGG 172 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F D Y++ NADE +PG DR I+ +PH +IEG +IA++ IGA Sbjct: 173 GFPTGLKWQFAKNSDGD-KKYVICNADEGDPGAFMDRSILEGDPHRVIEGMLIAAYGIGA 231 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++Y R E+ + L+ A+ + GLLG N +D + + GAGA++CGEETA Sbjct: 232 DEGYVYARAEYPLAIKRLEKAIKDAEEYGLLGKNIFSSNFDFKLHIKKGAGAFVCGEETA 291 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A +P I+ GA+ +S G E + Sbjct: 292 LMNSIEGKRGMPIPRPPYPAKKGLWGKPTNINNVETYANIPFIINEGAAEFSKIGTEGSS 351 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I + GG+ AV GG S CLP Sbjct: 352 GTKVFALTGKINNTGLVEVPMGTTLKEVIYEIGGGL-NKGKKFKAVQTGGPSGGCLPEDY 410 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD + ++ F + ESCG+CTPCREGT Sbjct: 411 L-DLPIDYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQSESCGKCTPCREGTKR 469 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G ++ +I+LL E+ +I+ ++C LG +A P+ I+ FR E I Sbjct: 470 MLEILNRITEGEGKEGDIELLLELGDHIKSTSLCGLGQSAPNPVLSTIRYFRDEYEAHIK 529 Query: 418 QYHRCN 423 + C Sbjct: 530 DQN-CP 534 >gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 589 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 156/425 (36%), Positives = 244/425 (57%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +L +Q RI N + + + D +R + + K L+ R+ II E+K SGLRGRGGAG Sbjct: 104 LLANQQRIVLRNCGIIDPECIEDYEAREGYQALKKALKMERNAIIEEIKKSGLRGRGGAG 163 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW S Y++ NADE +PG DR + +PH++IEG +I ++AIGA+ Sbjct: 164 FPTGLKWQLCAFENS-SKKYVICNADEGDPGAFMDRSTLEGDPHSVIEGMIIGAYAIGAN 222 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ E L+ A+ G LG N + + + GAGA++CGEETAL Sbjct: 223 EGYIYCRAEYPMALEHLKTAISAAEKKGYLGKNILGSSFSFALHIKEGAGAFVCGEETAL 282 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 ++S+EGK+G P L+PP+PA GL+G PT +NNVE+ A +P I+ GA + +G E + G Sbjct: 283 MQSIEGKRGMPTLRPPYPAVKGLWGKPTNINNVETWANIPWIIMHGAQEFRKYGTEKSPG 342 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G + +E M I ++I K GG++ AV GG S C+PA ++ Sbjct: 343 TKVFALAGKIAGSGLIEVPMGIPLKDIIYKVGGGMKTANP-FKAVQMGGPSGGCIPAEKL 401 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I+DYD + G+ +G+ ++VMD T ++ F ++ESCG+CT CR GT M Sbjct: 402 E-TIVDYDSITATGAIMGSGGMVVMDSGTCMVDVARFFLNFTQNESCGKCTFCRIGTKRM 460 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ R+ +G + +++D L E+++N+ ++C LG A P+ + FR I Sbjct: 461 LEILTRITEGKGELQDLDNLEELAENVIKGSLCGLGQTAPDPVLTTLHYFRDEYLAHIVD 520 Query: 419 YHRCN 423 H C Sbjct: 521 KH-CP 524 >gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Clostridium thermocellum ATCC 27405] gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 597 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 156/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +++ +K SGLRGRGG Sbjct: 110 FFAKQQRIALRNCGVINPENIDEYIAFDGYKALAKVLTEMTPEQVVDVIKRSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K +D Y+ NADE +PG DR ++ +PH++IE IA +AIGA Sbjct: 170 GFPTGLKWEFAMKQDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + L A+ + GLLG N + D+ + GAGA++CGEETA Sbjct: 229 NQGYVYVRAEYPIAVKRLGIAIQQAREYGLLGKNIFGTDFSFDVDIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 289 LMTSIEGHRGEPRPRPPFPAVKGLWQKPTLLNNVETYANIPQIILKGPEWFASIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I GGI A GG S C+PA Sbjct: 349 GTKVFAVGGKINNTGLVEIPMGTTLREVIYDIGGGIP-NGKKFKAAQTGGPSGGCIPASH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L ++GS +G+ +I+MD T ++ F ESCG+C PCR GT Sbjct: 408 I-DTPIDYDSLTQLGSMMGSGGLIIMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ER+ +G ++ +I+ L ++KNI+ +C LG A PI ++ FR E + Sbjct: 467 MYEILERITEGKGEEGDIEKLEMLAKNIKASALCGLGQTAPNPILSTLRYFRHEYIEHVR 526 Query: 418 QYHRC 422 +C Sbjct: 527 D-KKC 530 >gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] Length = 599 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 163/427 (38%), Positives = 246/427 (57%), Gaps = 7/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ + ++K+L + +I+EVKASGLRGRGG Sbjct: 111 FYKKQKRIALANCGVIDPEDIEEYIAFDGYMALEKVLFKMTPQEVIDEVKASGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW F S D ++ NADE +PG DR ++ +PH LIE IA++AIG Sbjct: 171 GFPTGLKWQFAYNADSPDGVKFVACNADEGDPGAFMDRSVLEGDPHRLIEAMAIAAYAIG 230 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A ++YVR E+ + LQ A+D+ GLLG N + D+ + GAGA++CGEET Sbjct: 231 AQKGYVYVRAEYPIAVKRLQIAIDQAKDYGLLGDNVFDTDFSFDLEIRLGAGAFVCGEET 290 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G+PR +PPFPAN GL+ PT +NNVE+ A +PTI+ GA ++ G E + Sbjct: 291 ALMNSVEGKRGEPRPRPPFPANKGLFERPTVLNNVETYANIPTIILEGAESFASVGTEKS 350 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F++ G +N +E M T E+I + GGI A GG S C+P+ Sbjct: 351 KGTKVFALGGKINNTGLLEIPMGTTLREVIYEIGGGIP-NGKAFKAAQTGGPSGGCIPSS 409 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ +DYD L +G+ +G+ +IVMD ++ F + ESCG+C PCR GT Sbjct: 410 EL-DIPIDYDNLISIGAMMGSGGLIVMDEDNCMVDVARFFLDFTQDESCGKCPPCRIGTK 468 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ G ++ +I+ L E+++ I+ +C LG A P+ IK FR E I Sbjct: 469 RMLEILERICDGQGEEGDIERLEELAEGIKASALCGLGQTAPNPVLSTIKYFRDEYEAHI 528 Query: 417 DQYHRCN 423 + RC Sbjct: 529 YE-KRCP 534 >gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 573 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI +N + + + + ++R + + K L E + +++EVK SGLRGRGGA Sbjct: 87 FYSKQHRIVLSNCGYIDPEKIEEYIARDGYIALGKALLEMTPEEVLDEVKKSGLRGRGGA 146 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K Y++ NADE +PG DR + +PH++IEG + ++AIGA Sbjct: 147 GFPTGLKWEFARKAP-GNKKYVICNADEGDPGAFMDRSTLEGDPHSVIEGMALGAYAIGA 205 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + L+ A+ + GLLG N + + + GAGA++CGEETA Sbjct: 206 DEGYIYCRAEYPLAIKRLKIAIAQAEEMGLLGDNIMGTNFSFHLHLKEGAGAFVCGEETA 265 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A VP I+ GA W++ G E ++ Sbjct: 266 LMASIEGRRGMPRPRPPFPAQHGLWGKPTNINNVETWANVPKIILNGADWFASMGTEKSK 325 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT E+I + GGI AV GG S CL Sbjct: 326 GTKIFALTGKITNTGLIEVPMGITIKEIIYELGGGI-LNGKEFKAVQIGGPSGGCLTKEH 384 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L G+ +G+ ++VMD T ++ F + ESCG+C PCREGT Sbjct: 385 L-DLPIDYESLTGAGAIMGSGGLVVMDEDTCMVDVARFFLEFTQRESCGKCVPCREGTKQ 443 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ KG ++ L E++ ++ ++C LG A P+ I+ FR I+ Sbjct: 444 MLLMLEKICKGEGTLEDLSKLEELAYMVKETSLCGLGQTAPNPVITTIRYFRDEYLAHIE 503 Query: 418 QYHRCN 423 + RC Sbjct: 504 E-KRCP 508 >gi|289207898|ref|YP_003459964.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. K90mix] gi|288943529|gb|ADC71228.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. K90mix] Length = 426 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 215/419 (51%), Positives = 273/419 (65%), Gaps = 8/419 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 F Y SL S G + ++K+ + + +I EVK S LRGRGGAGF TG+KW Sbjct: 7 FATRYLDDPASLETYKSVGGYQALEKVYKGKMAPEDVIEEVKTSNLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DESEPGTCKDR+I+ + PH LIEG IA +AIGA + Y+R Sbjct: 67 SFMPRNTPG-QKYIVCNSDESEPGTCKDREILMYNPHALIEGMAIAGYAIGATVGYNYMR 125 Query: 127 GEFIRERE-SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GEF+ E AA+ E Y +G LG + G D D+ GAGAYICGEETALLESLEG Sbjct: 126 GEFMDEVNTRFTAALKEAYDAGYLGKDIFGSGVDFDLYPSLGAGAYICGEETALLESLEG 185 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPAN GLYG PTT+NN ES+A +P I+R G W++ G + G KLFS+ Sbjct: 186 KKGQPRFKPPFPANYGLYGKPTTINNTESLASIPAIIRNGGQWFADLGVPKSGGEKLFSV 245 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHVN P E + F +L+E G L AVIPGGSSVP +P M A MD Sbjct: 246 SGHVNKPGNYEIPLGTPFKDLLEMSGG--VLNGRKLKAVIPGGSSVPVVPGDVMLKANMD 303 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D + + GS LG+ AVIVMD + D++KA+ R+S FY ESCGQCTPCREGTGW+ R++ R Sbjct: 304 FDSIAQAGSMLGSGAVIVMDETADMVKALQRISRFYFSESCGQCTPCREGTGWLYRMLTR 363 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +V+G + +++ L +V+ IEG TICALGDAAA P++ IK+FR E I Q+ R Sbjct: 364 IVEGQGRPEDLERLDDVASKIEGHTICALGDAAAMPVRSFIKHFRHEFEYYI-QHGRSP 421 >gi|190895762|gb|ACE96394.1| esterase/lipase/thioesterase [Populus tremula] gi|190895772|gb|ACE96399.1| esterase/lipase/thioesterase [Populus tremula] Length = 396 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP Sbjct: 1 NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A+IY+RGE++ Sbjct: 61 KASDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLESLEGK+G+P Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTKLF +SGHVN Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP +MDYD LK Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ +MERL G Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396 >gi|328950036|ref|YP_004367371.1| NADH-quinone oxidoreductase, F subunit [Marinithermus hydrothermalis DSM 14884] gi|328450360|gb|AEB11261.1| NADH-quinone oxidoreductase, F subunit [Marinithermus hydrothermalis DSM 14884] Length = 442 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 197/421 (46%), Positives = 264/421 (62%), Gaps = 12/421 (2%) Query: 6 DRIFTNLYGL----QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60 R LY +L ++ G ++ K L D +I EVK SGLRGRGGAGF Sbjct: 14 PRFVRTLYAHVGRPNSWTLEYYLAHGGYEAARKALTRMTPDEVIEEVKKSGLRGRGGAGF 73 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK HY+V NADESEPG+ KDR ++ +PH LIEG +IA +AI A Sbjct: 74 PTGVKWSFMPKEPK-TQHYIVCNADESEPGSFKDRYLLEDDPHQLIEGMIIAGYAIRATK 132 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVRGE+ R + L AA+ E YA G LG N G+ D+ VH GAGAYICGEETAL+ Sbjct: 133 GYVYVRGEYRRAYDRLTAAIREAYAKGYLGENLFGSGFSFDLYVHRGAGAYICGEETALM 192 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG + PR+KPPFPA GLYG PTT+NNVE++ V I+ RGA W+ G E ++G Sbjct: 193 NSLEGLRANPRMKPPFPAQSGLYGKPTTINNVETLCSVVHIIERGADWFGQMGTERSKGH 252 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQM 298 KLF ISG V P E + TF ELI GG + + A+IPGGSS P +P ++ Sbjct: 253 KLFQISGPVRRPGVYELPLGTTFRELIYDWAGGPT---EPIKAIIPGGSSTPPVPWTDEV 309 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GW 357 + MDY+ + +G+ LGT VI++ S I+ A+W ++ FY HESCG+CTPCREG GW Sbjct: 310 LDSPMDYEHCQRLGTLLGTGGVILIPESVCIVNAMWNVTRFYAHESCGKCTPCREGVSGW 369 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ E++ +G + +++LL + NIEG+ C L DAA WP++G +K+FR E I+ Sbjct: 370 LPKLFEKIERGRGEPGDVELLENLLDNIEGKAFCPLADAAVWPVRGSLKHFRHEYEHHIE 429 Query: 418 Q 418 Sbjct: 430 H 430 >gi|190895764|gb|ACE96395.1| esterase/lipase/thioesterase [Populus tremula] gi|190895766|gb|ACE96396.1| esterase/lipase/thioesterase [Populus tremula] gi|190895768|gb|ACE96397.1| esterase/lipase/thioesterase [Populus tremula] gi|190895770|gb|ACE96398.1| esterase/lipase/thioesterase [Populus tremula] Length = 396 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP Sbjct: 1 NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A+IY+RGE++ Sbjct: 61 KTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLESLEGK+G+P Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTKLF +SGHVN Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP +MDYD LK Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ +MERL G Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396 >gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 583 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 161/422 (38%), Positives = 251/422 (59%), Gaps = 7/422 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + +S+ + + +G + ++K+L E + +I E+K SGLRGRGGAGF T Sbjct: 101 QVRIALRNCGAIDPESIEEYIEKGGYKALEKVLKEMTPEQVIEEMKVSGLRGRGGAGFPT 160 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 KW+ + P Y+V NADE +PG DR ++ +PH+++EG IA +AIGA + Sbjct: 161 WFKWNAT-RSAQGSPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAEHGY 219 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYVR E+ + L+ A+++ G LGSN G+ D+ + GAGA++CGEETAL+ S Sbjct: 220 IYVRAEYPLAIKRLEIAIEQAREKGFLGSNIFGTGFSFDVKIKAGAGAFVCGEETALIAS 279 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG++G PRLKPPFPA G G PT +NNVE+ A VP I+ G ++ G E ++GTK+ Sbjct: 280 LEGERGMPRLKPPFPAQKGYMGKPTNINNVETFANVPWIILNGGKAFAAIGTEKSKGTKV 339 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G V VE M I ++I + GGI+ + AV GG S C+P + Sbjct: 340 FALAGKVKKGGLVEVPMGIPLRDVIFRIGGGIKNDRK-IKAVQLGGPSGGCVPES-LLDT 397 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ + + G+ +G+ +IVMD +T ++ F + ESCG+CT CR GT M+ + Sbjct: 398 PVDYESIVKTGAIMGSGGMIVMDETTCMVDMARFFLDFTRKESCGKCTHCRLGTKRMLEI 457 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+ +G ++ +++LL E++ N++G ++C LG A P+ ++ FR E I + Sbjct: 458 LERICEGRGEESDLELLEELAVNVKGGSLCGLGQTAPNPVLTTLRYFRDEYEAHIKD-KK 516 Query: 422 CN 423 C Sbjct: 517 CP 518 >gi|312371261|gb|EFR19494.1| hypothetical protein AND_22330 [Anopheles darlingi] Length = 1009 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 258/401 (64%), Positives = 305/401 (76%), Gaps = 10/401 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG L ++ RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 61 LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEIKVSGLRGRGGAGFP 120 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 121 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGKAMGARAA 180 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+E Sbjct: 181 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 240 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG W++GFGR N GTK Sbjct: 241 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 300 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI ELIE+H GGIRGGWDNLL +IPGGSS P +P Sbjct: 301 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 360 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+DGL + + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG WM + Sbjct: 361 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 420 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGR---------TICA 392 +M R V G A+ EID+L+E+SK IE TIC Sbjct: 421 IMHRFVAGNARPSEIDMLWEISKQIEVAASHHIEEELTICG 461 >gi|296136701|ref|YP_003643943.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12] gi|295796823|gb|ADG31613.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12] Length = 442 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 211/421 (50%), Positives = 268/421 (63%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 Q +I L G +L + R + + KIL +G + +I EVKAS LRGRGGAGF T Sbjct: 21 QPQILAGLNG-DNWALEGYLQRDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPT 79 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N+DE EPGT KDRDI+R PH +IEG IA+FA+G + Sbjct: 80 GLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGY 138 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE + + + A+ + +G LG N + + HG GAYICGEETALLES Sbjct: 139 NYIHGEIFEDYDRFEEALRQARDAGYLGDNILGSNFSFQLHAAHGFGAYICGEETALLES 198 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+ Sbjct: 199 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRHGGQAYLEVGKPNNGGTKI 258 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 +S+SG V P E M F +L+E G L AVIPGGSS P LPA M Sbjct: 259 YSVSGDVAKPGNYEVPMGTPFAKLLELAGGM--REGRELKAVIPGGSSAPVLPASIMMDC 316 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIV++ + ++K++ RLS FY+HESCGQCTPCREGTGW+ RV Sbjct: 317 TMDYDSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLWRV 376 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G + ++DLL VS NI GRTICALGDAAA P++ +K+FRP E I + Sbjct: 377 VHRIENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHIT-HKT 435 Query: 422 C 422 C Sbjct: 436 C 436 >gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 649 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + + ++D ++ G + ++ ++L+ + +I EV+ SGLRGRGGA Sbjct: 163 FYAKQTRLLLANCGYIDPEQIADYVAVGGYRSLVQVLQHMAPEQVIEEVQQSGLRGRGGA 222 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW+ + D Y++ NADE +PG DR ++ +PH ++EG +IA +A+G+ Sbjct: 223 GFPTGKKWAAARRAAGDI-KYIICNADEGDPGAFMDRSVLEGDPHAVLEGMLIAGYAVGS 281 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + L+ A+++ GLLG N G+D DII+ GAGA++CGE TA Sbjct: 282 TVGYIYCRAEYPLAIKRLKIAIEQARRWGLLGRNILNSGFDFDIILKEGAGAFVCGEGTA 341 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG++G PR+KPP GL+ PT +NNVE++A +P I+R GA + G N+ Sbjct: 342 LQASIEGQRGMPRVKPPRSTEKGLWQKPTVLNNVETLANIPLIIRIGAERFRQIGTANSP 401 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++SG V P VE M +T E+I GGIR AV GG S CL Q Sbjct: 402 GTKIFALSGAVANPGLVEVPMGVTLREVIFGIGGGIR-DGKKFKAVQLGGPSGGCLT-EQ 459 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D+D L G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT Sbjct: 460 HLDLPVDFDSLTSAGATVGSGGMVVMDENTCMVDVARFFLAFTQAESCGKCTPCREGTKR 519 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G A ++ L + + ++ ++C LG A P+ +K FR I Sbjct: 520 MLEILERMCQGRAGMDDLADLERLCRVVKTTSLCGLGQACPNPVLSTLKYFRNEYLAHIV 579 Query: 418 QYHRCN 423 H C Sbjct: 580 DKH-CP 584 >gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 541 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 155/427 (36%), Positives = 237/427 (55%), Gaps = 8/427 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R + N + +++ D ++ G ++ + K+L R+ +I+EVK SGLRG GGA Sbjct: 110 FYNKQQRTLLKNCGHIDPENIDDYIAAGGYEALKKVLSGMTREQVIDEVKRSGLRGLGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW K D Y++ NADE +PG +DR ++ PH+L+EG VIA +AIGA Sbjct: 170 GFPAGRKWEACYKAEGD-VKYVICNADEGDPGAFQDRSVIEGTPHSLLEGMVIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + + LG + +I V GAGA++CGE TA Sbjct: 229 KVGYIYVRAEYPLAVKRLRTAISKAKKNKYLGKKILGTDFTFNIEVFQGAGAFVCGESTA 288 Query: 178 LLESLEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 L+ S+EGK+G P+ P P VGL+ PT +NNV+++A +P I+ GA W++G G E + Sbjct: 289 LVLSIEGKRGMPKASPRPRTTEVGLWDKPTLLNNVKTLAYIPQIIANGADWFAGIGTEKS 348 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GT + +++G V +E M IT E+ GG AV GG S CLP Sbjct: 349 KGTVILALTGKVVNNGLIEVPMGITLREI-IFGIGGGIPDGKKFKAVQTGGPSGGCLP-E 406 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+D L + GS +G+ ++VMD T ++ F + ESCGQC PCR GT Sbjct: 407 HLLDLPVDFDSLNDAGSIMGSGGIVVMDEETCMVDVARYFLDFTQRESCGQCIPCRLGTK 466 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M +++ + KG Q +ID+L E+ + + ++CALG A P+ ++ FR E I Sbjct: 467 QMFDILDDITKGKGQPEDIDMLLEIGEAVAKTSLCALGKTAPNPVLTTLRFFRHEYEAHI 526 Query: 417 DQYHRCN 423 ++ RC Sbjct: 527 NE-KRCP 532 >gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 613 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 250/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +Q +I TN + + + + ++ G + + + L + +I+EVK SGLRGRGG Sbjct: 128 FYNEQQQIALTNCGQINPEDIEEYLAVGGYQALGEALTGMKPEEVIDEVKESGLRGRGGG 187 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + D Y++ NADE +PG DR I+ +PH ++EG +IA +A+G+ Sbjct: 188 GFPTGLKWQFAQESEGD-KKYIICNADEGDPGAFMDRSILEGDPHKVLEGMIIAGYAVGS 246 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + GLLG N + DI + GAGA++CGEETA Sbjct: 247 DEGYIYVRAEYPLAVKRLREAISQAREYGLLGENLFGTEFSFDINIKEGAGAFVCGEETA 306 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G P+ +PP+PA GL+G PT +NNVE+ A + TI+ GA +S G E ++ Sbjct: 307 LIASIEGRRGMPQSRPPYPAQEGLWGKPTNINNVETYANISTIITEGAESFSSVGTEESK 366 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M IT +E+I GGI G D AV GG S CLP + Sbjct: 367 GTKVFALAGKINNTGLVEVPMGITVEEIIYDIGGGIPGDKD-FKAVQIGGPSGGCLPEEK 425 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L E G+ +G+ ++VMD T ++ F ESCG+C PC EGT Sbjct: 426 LH-LPIDYDSLLEAGAMMGSGGLVVMDEDTCMVDVARYFLDFTVSESCGKCAPCSEGTKR 484 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G ++ +++ L ++++ I+ ++C LG A P+ +K FR + + Sbjct: 485 MLDILERITDGNGKQEDLEQLEKLAEVIKDTSLCGLGQTAPNPVLSTLKYFRDEYKAHVK 544 Query: 418 QYHRCN 423 ++C Sbjct: 545 D-NKCP 549 >gi|294340856|emb|CAZ89251.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Thiomonas sp. 3As] Length = 442 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 211/421 (50%), Positives = 268/421 (63%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 Q +I L G L ++R + + KIL +G + +I EVKAS LRGRGGAGF T Sbjct: 21 QPQILAGLNGEN-WDLQGYLARDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPT 79 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N+DE EPGT KDRDI+R PH +IEG IA+FA+G + Sbjct: 80 GLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGY 138 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE + + + A+ + +G LG N + + HG GAYICGEETALLES Sbjct: 139 NYIHGEIFEDYDRFEEALRQARDAGYLGDNILGSNFSFQLHAAHGFGAYICGEETALLES 198 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+ Sbjct: 199 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKI 258 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 +S+SG V P E M F +L+E G L AVIPGGSS P LPA M Sbjct: 259 YSVSGDVAKPGNYEVPMGTPFAKLLELAGGM--REGRELKAVIPGGSSAPVLPASIMMDC 316 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIV++ + ++K++ RLS FY+HESCGQCTPCREGTGW+ RV Sbjct: 317 TMDYDSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLYRV 376 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G + ++DLL VS NI GRTICALGDAAA P++ +K+FRP E I + Sbjct: 377 VHRIENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHIT-HKT 435 Query: 422 C 422 C Sbjct: 436 C 436 >gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] Length = 597 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 153/427 (35%), Positives = 234/427 (54%), Gaps = 7/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + R ++ + K+L+ D +I + SGLRGRGG Sbjct: 109 FYKKQHRIALRNCGVINPECIDEYIGRNGYEALGKVLKTMTPDDVIQVILDSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG KW + D Y+ NADE +PG DR ++ +PH +IE IA +AIG Sbjct: 169 GFPTGKKWQLARNLVKDADQKYVCCNADEGDPGAFMDRSVLEGDPHVVIEAMAIAGYAIG 228 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY+R E+ + LQ A+D+ GLLG N G+D D+ + GAGA++CGEET Sbjct: 229 ATQGYIYIRAEYPIAVQRLQIAIDQAREYGLLGKNIFDSGFDFDLDIRLGAGAFVCGEET 288 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ GA W++ G E + Sbjct: 289 ALMTSIEGNRGEPRPRPPFPAESGLFKKPTVLNNVETYANIPQIILNGADWFASMGTEKS 348 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F++ G ++ VE M T E+I + GGI A GG S C+PA Sbjct: 349 KGTKVFALGGKIHNTGLVEVPMGTTLREVIYEIGGGIP-NGKAFKAAQTGGPSGGCIPAE 407 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 408 HL-DIPIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLQFTVDESCGKCTPCRIGTK 466 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++E++ G A ++D + ++ I+ ++C LG A P+ ++ F+ + Sbjct: 467 RLYEMLEKITSGNATMEDLDKMEKLCYYIKNNSLCGLGQTAPNPVLSTLRYFKDEYIAHV 526 Query: 417 DQYHRCN 423 +C Sbjct: 527 KD-KKCP 532 >gi|320161184|ref|YP_004174408.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] gi|319995037|dbj|BAJ63808.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] Length = 548 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 167/423 (39%), Positives = 252/423 (59%), Gaps = 6/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61 +Q + + ++ D + + + K+L + +I EV+ SGL+GRGGAGF Sbjct: 115 AEQRIVLERAGVIDPANIEDYILHDGYAALGKVLTSMKPEEVIAEVQKSGLKGRGGAGFP 174 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+ K Y++ NADESEPGT KDR I+ +PH ++E IA +A+GA Sbjct: 175 TGLKWSFVAKAP-GTKKYVICNADESEPGTFKDRVILEGDPHAILEAMAIAGYAVGADEG 233 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+ +E L A+ + G LG N ++ +I VH GAGAYICGEETAL+E Sbjct: 234 YIYVRGEYALAQERLAIAIAQAKEYGFLGKNIFGTEFNFEIHVHSGAGAYICGEETALIE 293 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PR +PP+P GL+G PT VNNVE++A +P ILR GA WY FG ++ GTK Sbjct: 294 SIEGKRGEPRARPPYPTTHGLWGKPTLVNNVETLANIPPILRNGAEWYRKFGTPSSPGTK 353 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +++I G+VN +E M IT E+I + G++ GGSS +PA ++ Sbjct: 354 VYTILGNVNNTGLIEVPMGITLREVIAIYGRGMK-NGRTFKLAQTGGSSGSVIPAS-LQD 411 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD++ + G LG+ A+++ D T ++ L F++ ESCG+CTPCR GT + Sbjct: 412 TPMDFESYNKAGVSLGSGALLICDEDTCVVDLAKVLMNFFRRESCGKCTPCRIGTYRAYQ 471 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R+ +G +++D L +S+N+ + C LG AA PI+ ++K FR +E I + Sbjct: 472 ILQRISEGQGVLKDLDELLSLSENLVNLSNCGLGQTAATPIKDILKYFRAEVEAHI-RLG 530 Query: 421 RCN 423 C Sbjct: 531 VCP 533 >gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 169/423 (39%), Positives = 252/423 (59%), Gaps = 6/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61 Q + +N + +S+ + ++ + V + L +I+EVK +GLRGRGG GF Sbjct: 116 KQQRVVLSNCGRVDPESIKEYIAEDGYQAVGETLTTMTSQEVIDEVKEAGLRGRGGGGFP 175 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F D Y++ NADE +PG DR I+ +PH +IEG +IA++AIGA Sbjct: 176 TGIKWQFAHDSEDD-KKYIICNADEGDPGAFMDRSILEGDPHRVIEGMIIAAYAIGASEG 234 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ E L+ A+++ GLLG N + G+D + + GAGA++CGEETAL+ Sbjct: 235 YIYVRAEYPLAIERLEKAIEQAEEYGLLGDNLFESGFDFKLQIKKGAGAFVCGEETALMN 294 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G PR +PPFPA GL+G P+ +NNVE+ A VP I+ +GA YS G E++ GTK Sbjct: 295 SIEGKRGMPRPRPPFPAQKGLWGYPSNINNVETYANVPVIINQGADEYSKVGTEDSTGTK 354 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+I+G + E M IT E+I GGI G + AV GG S CLP ++ Sbjct: 355 IFAITGKIQNTGLAEVPMGITMREIIYDVGGGI-MGGKDFKAVQIGGPSGGCLPEEKL-D 412 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DYD L E G+ +G+ ++VMD T ++ F + ESCG+CTPCREGT M+ Sbjct: 413 LSVDYDSLIEAGAMMGSGGLVVMDEDTCMVDVAKFFLDFTQSESCGKCTPCREGTKRMLE 472 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R+ G ++ +I+LL E+S +I+ ++C LG +A P+ I+ FR E I + Sbjct: 473 ILKRITAGEGKEGDIELLEELSHHIKSTSLCGLGQSAPNPVLSTIQYFRDEYEAHIYE-E 531 Query: 421 RCN 423 C Sbjct: 532 TCP 534 >gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] Length = 595 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 146/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + +++ ++ + + ++L E D +I +K SGLRGRGGA Sbjct: 109 FYKKQMRVALRNCGVIDPEDINEYIAYDGYQALGRVLTEMTPDDVIEILKTSGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T +KW+F + Y+ NADE +PG DR ++ +PH ++E IA + IG+ Sbjct: 169 GFPTWLKWNFAKAQPAG-QKYVCCNADEGDPGAFMDRSVLEGDPHAVLEAMTIAGYTIGS 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+++ G LG + G+D DI + GAGA++CGEETA Sbjct: 228 NQGYIYVRAEYPIAVKRLEIAINQSREMGFLGKDIFGSGFDFDIELRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G P+ +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 288 LMTSIEGHRGEPRPRPPFPAVKGLFGKPSILNNVETWANIPQIILKGPEWFASMGTEKSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G ++ VE M T E+ + GG A GG S C+PA Sbjct: 348 GTKVFALGGKIHNTGLVEVPMGTTLREI-IEEIGGGIPNGKKFKAAQTGGPSGGCIPAS- 405 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 406 LIDTEIDYDNLLAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKR 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++++ +G A ++D + E+ I+ +C LG A P+ ++ FR + Sbjct: 466 LYEMLDKITRGNATLEDLDKMEELCYYIKENALCGLGQTAPNPVLSTLRYFRDEYIAHVV 525 Query: 418 QYHRCN 423 RC Sbjct: 526 D-KRCP 530 >gi|190895760|gb|ACE96393.1| esterase/lipase/thioesterase [Populus tremula] gi|190895774|gb|ACE96400.1| esterase/lipase/thioesterase [Populus tremula] Length = 396 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 272/396 (68%), Positives = 317/396 (80%), Gaps = 1/396 (0%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 N+YGL +M RG W ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP Sbjct: 1 NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K+ RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A+IY+RGE++ Sbjct: 61 KISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 ER +L+ A E Y +GLLG N+ GYD D+ +H+GAGAYICGEETALLESLEGK+G+P Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTKLF +SGHVN Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP +MDYD LK Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+ +MERL G Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 A+ EID+L EV+K IEG TICALGDAAAWP+QGLI Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396 >gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 613 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 250/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q RI + + + + +S G + ++K L+ + +I E+ SGLRGRGGA Sbjct: 116 FIDKQQRIILKHCGVVNPEDIDSYLSVGGYKAIEKALKSMTPEQVIEEISRSGLRGRGGA 175 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWSF K R Y++ NADE +PG DR ++ PH+++EG +IA +A+GA Sbjct: 176 GFPTGTKWSFARKSP-GREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY+R E+ + L+ A+ + G LGS+ + +I++ GAGA++CGEETA Sbjct: 235 ENGYIYIRAEYPLAIKRLKIAIAQALEKGYLGSHILDSNFSFNIMIREGAGAFVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G R++PPFPA G++G PT++NNVE+ A VP I+ G +S FG EN++ Sbjct: 295 LIASVEGKRGMTRIRPPFPAQSGVWGKPTSINNVETFANVPWIILNGGDSFSRFGTENSK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M IT +E++ GG+ G L AV GG S C+PA Sbjct: 355 GTKVFALAGSIARGGLVEVPMGITINEIVYDVGGGLSSGRK-LKAVQTGGPSGGCIPAS- 412 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK++G+ +G+ +++MD ST ++ F K ESCG+CT CR GT Sbjct: 413 LADTQVDYDSLKKIGAIMGSGGMLIMDDSTCMVDVAKFFLKFTKSESCGKCTFCRVGTKQ 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++++ER+ G + +I+LL E+ + I +C LG P+ IK FR E I Sbjct: 473 LLKILERITNGEGRDGDIELLEELGQKISAGALCGLGQTVPNPVLTTIKYFRHEYEAHIF 532 Query: 418 QYHRCN 423 C Sbjct: 533 D-KACP 537 >gi|88607132|ref|YP_505037.1| NADH dehydrogenase I subunit F [Anaplasma phagocytophilum HZ] gi|88598195|gb|ABD43665.1| NADH dehydrogenase I, F subunit [Anaplasma phagocytophilum HZ] Length = 426 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 258/418 (61%), Positives = 315/418 (75%), Gaps = 2/418 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D+D IFTNL G + L+ + SRG W N ++L GRD II E+K SGLRGRGGAGF Sbjct: 1 MRDEDSIFTNLSGKESPYLAAAKSRGTWFNTKELLALGRDKIIQEIKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK YLVVNADESEPGTCKDRDI+R++PH ++EG +IA FA+G Sbjct: 61 TGLKWSFMPKALPEGSSAYLVVNADESEPGTCKDRDIIRYDPHKILEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L A+ E YA GLLG N+ GY++++ +H GAGAYICGEE+A + Sbjct: 121 AYIYIRGEFYNEYTVLFKALQEAYADGLLGENACGSGYNLNVFIHRGAGAYICGEESAQI 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG+KG PRLKPPFPA VGLYG PTTVNNVE+IAVV ILRRG+ W+S G NN GT Sbjct: 181 ESIEGRKGMPRLKPPFPAAVGLYGSPTTVNNVETIAVVGDILRRGSGWFSSLGIPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNNPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKHICD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ SGLGTA +IVMD+STD+I+AI R+S FY HESCGQC+PCREGTGWM Sbjct: 301 DITMDFDSLRAAKSGLGTAGLIVMDKSTDLIEAIERISSFYMHESCGQCSPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 R+M +++ G A++ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++EER+ Sbjct: 361 RMMRKMLDGTAEESEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRSVVEERLR 418 >gi|217077616|ref|YP_002335334.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] gi|217037471|gb|ACJ75993.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] Length = 537 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 165/410 (40%), Positives = 245/410 (59%), Gaps = 6/410 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N+ + K++ + ++ + + K L + IINE+K SGLRGRGGAGF TG+KW Sbjct: 110 VTRNIGKIDPKNIDEYIANDGYFALAKALSMKPEEIINEIKESGLRGRGGAGFPTGLKWE 169 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F K +D Y+V NADE EPGT KDR IM +PH++IE +IA +A+GA +IY+RG Sbjct: 170 FAYKTDAD-QKYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATKGYIYIRG 228 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E+++ A+++ Y G LG N G++ D+ + GAGAYICGEETALLES+EG Sbjct: 229 EYYGSIENIKKAINDAYEYGFLGENILNSGFNFDLSIRLGAGAYICGEETALLESIEGHA 288 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PRLKPPFP GL+G PT +NNVE++A VP I+ GA W+ G EN+ GTK+F +G Sbjct: 289 GRPRLKPPFPPQKGLFGKPTVINNVETLANVPQIILNGAEWFKQIGTENSPGTKVFCFAG 348 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 ++N VE M +T EL+ G L V GG + + ++ +DYD Sbjct: 349 NLNNRGIVELPMGVTVKELLIYAGG---ISGGKLKMVQTGGIAGTFIDESKL-DVPLDYD 404 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + G LG+ ++ ++ S ++ + F++HESCG+CTPCREGT + ++E++ Sbjct: 405 SFAKYGVSLGSGVILGVNDSHCVVDIAKNVMEFFRHESCGKCTPCREGTKIAVEILEKMS 464 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 K A +++ L E+S + +C LG + P+ LI NF+ E I Sbjct: 465 KFEATMDDLEHLIEISNVAKEAALCGLGQSFPVPLLSLIDNFKEEFEMHI 514 >gi|148269832|ref|YP_001244292.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|147735376|gb|ABQ46716.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] Length = 545 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 171/423 (40%), Positives = 254/423 (60%), Gaps = 6/423 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++ RI N+ + + + ++R + + K L+ +I E+K SGLRGRGGAGF Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFP 166 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F K +D Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E L+ AV++ Y G LG N G++ D+ + GAGAY+ GEETAL+E Sbjct: 226 YIYIRGEYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GTK Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTK 345 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G+V VE M +T +LI K GGI GG L V GGS+ + ++ Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK-LKVVQTGGSAGTFIGPDKL-D 403 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + G LG+ ++V D + ++ + F++HESCG+CTPCREGT ++ Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVN 463 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ +G +K ++D L E+++N + C LG + P+ ++ NF I Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFRAHIS-AD 522 Query: 421 RCN 423 +C Sbjct: 523 KCP 525 >gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 629 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 157/427 (36%), Positives = 243/427 (56%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I NL + + D ++ G + + K+L E + +I EVK SGLRGRGGA Sbjct: 129 FFRHQLKIALRNLGKINPMDIEDYLAVGGYTALAKVLTEMTPEEVIEEVKKSGLRGRGGA 188 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117 GF TG+KW + +++ N DE +PG D +M +PH++IEG +I ++AIG Sbjct: 189 GFPTGVKWEGARRAP-GARKFVICNGDEGDPGAFMDASLMEGDPHSVIEGMIICAYAIGN 247 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 +IYVR E+ + L A+++ A G LG + G+ DI + GAGA++CGE T Sbjct: 248 CREGYIYVREEYPLAVKRLSIALEQARAWGFLGEDILGTGFSFDIQLKKGAGAFVCGEST 307 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 L+ S+EGK+ PR+ PP GL+G PT +NNVE+ A +P I+ +G WY+ +G E + Sbjct: 308 TLMMSIEGKRPSPRVTPPRSVEKGLWGMPTCLNNVETFANIPIIILKGGEWYAQYGTETS 367 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK F I+G V +E M +T E+++K GG+ L AV GG S C+P Sbjct: 368 KGTKAFCITGKVRNTGLIEVPMGMTLREIVQKLGGGMLEEA-QLKAVQTGGPSGGCIPEE 426 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ L +GS +G+ ++V+D T +++ F + ESCG+C PCR GT Sbjct: 427 YL-DTPVDYESLTRLGSMMGSGGMVVVDEGTCMVEFARFFLNFTQQESCGKCPPCRIGTY 485 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M++++ R+V G Q+ +I+LL E+ + I+ ++C LG +A P+ IK FR E I Sbjct: 486 EMLQILNRIVAGEGQEGDIELLEELGRKIKETSLCGLGQSAPNPVLSTIKYFREEYEAHI 545 Query: 417 DQYHRCN 423 + RC Sbjct: 546 RE-KRCP 551 >gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment culture clone BF] Length = 595 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 167/426 (39%), Positives = 250/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 +Q RI N + + + ++R + + K+L + + ++N VK SGLRGRGG Sbjct: 110 FFQNQLRIALRNCGHINPDDVEEYIARDGYRALGKVLAEYKPEDVVNVVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K SD Y++ NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGLKWELTRKSTSDM-KYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E L A+ + GLLG N + G+ DI + GAGA++CGEETA Sbjct: 229 QQGFVYVRAEYAIAVERLTTAIKQAREKGLLGKNLFESGFSFDIDLRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE++A +P I+ GA W++GFG E ++ Sbjct: 289 LITSIEGNRGEPRPRPPFPAQQGLWGKPTLINNVETLANIPMIILNGADWFAGFGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+I+G + +E M IT ++I GGI G + A GG S C+PA Sbjct: 349 GTKVFAIAGKIGNTGLIEVPMGITLRDIIYNIGGGIPDGRE-FKAAQTGGPSGGCIPAK- 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L E+GS +G+ +I+MD ST ++ F ESCG+CTPCR GT Sbjct: 407 LIDTPIDYDSLLEIGSMMGSGGLIIMDDSTCMVDIAKFYLEFTCDESCGKCTPCRVGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G ++ +IDLL E+ I+ ++C LG +A P+ ++ F + Sbjct: 467 MLEILERITEGKGREEDIDLLQELGHGIKETSLCGLGQSAPNPVLSTLRYFEDEYIAHVR 526 Query: 418 QYHRCN 423 C Sbjct: 527 D-KVCP 531 >gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] Length = 623 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 153/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K + +I+EV SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGNINAESIDEYIAVGGFQAMAKAFFDMSPQDVIDEVTKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + ++ Y+V N DE +PG D +M +P+ +IEG IA++A+GA Sbjct: 196 GFPAGKKWSQVARQK-EKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ A GLLG N G + + ++ GAGA++CGE +A Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNILGSGVNFHLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 315 LTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M + +I GG++ G V GG S CL Q Sbjct: 375 GTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIEDQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D +K + + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 434 I-DRPLDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 493 MLEILERIVDGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHIK 552 Query: 418 QYHRC 422 +C Sbjct: 553 D-KKC 556 >gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270] gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270] Length = 531 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 151/426 (35%), Positives = 233/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI +G+ + S+ + ++ G + + K++ + ++NE+K SGLRGRGGA Sbjct: 46 FFEKQTRIALKNFGIVDEHSVKEYVALGGYYALAKVISSYTPEEVVNEMKNSGLRGRGGA 105 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + Y+V NADE +PG DR I+ +PH+++EG I +AIGA Sbjct: 106 GFPTGRKWEGAMQQPPG-QKYVVCNADEGDPGAFMDRSILEGDPHSVLEGMAICGYAIGA 164 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ + +L+ A+ + LLG N + + + GAGA++CGE TA Sbjct: 165 DRGFIYVRAEYPKAVINLREAIKKAEDENLLGDNIMGTDFSFHVELRLGAGAFVCGEGTA 224 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G PR K GL+ PT +NNVE+ A VP I+ +G+ WY G E++ Sbjct: 225 LIESIEGKRGMPRTKVYRTTVKGLFQKPTVLNNVETFANVPQIMYKGSDWYRSIGTEDSS 284 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M T +E++ GG + AV GG S C+P Sbjct: 285 GTKVFALVGKVANAGLVEVPMGTTINEIVYDIGGGTGND-KKVKAVQTGGPSGGCIPTDY 343 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D+ L ++GS +G+ ++VMD + ++ F ESCG+C PCREGT Sbjct: 344 -FDTPVDFGSLAKIGSIMGSGGMVVMDETDCMVDIARFFLDFTVEESCGKCVPCREGTKR 402 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G + +I+ L ++S+ I ++C LG AA P+ + FR E I Sbjct: 403 MLELLEKITSGKGEDGDIERLEDLSETITVASLCGLGQTAANPVVSTLHYFRNEYEAHIY 462 Query: 418 QYHRCN 423 +C Sbjct: 463 D-KKCP 467 >gi|167646790|ref|YP_001684453.1| NADH dehydrogenase subunit I F [Caulobacter sp. K31] gi|167349220|gb|ABZ71955.1| NADH-quinone oxidoreductase, F subunit [Caulobacter sp. K31] Length = 439 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 292/421 (69%), Positives = 340/421 (80%), Gaps = 1/421 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +L D+DRIFTNLYGLQ L + RG W+ IL+ GRDWII+ +K SGLRGRGGAGF Sbjct: 4 ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH Sbjct: 64 GTGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE++RERE L+AA+ + Y + L+G N+ G+D D+ VHHGAGAYICGEETALL Sbjct: 124 ACYIYIRGEYVREREVLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPRLKPPFPA GLYG PTTVNNVESIAV TILRRGA+W++GFGR NN GT Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNTGT 243 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLMEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 RVMER+ G A +EID L +V+ +EG TICALGDAAAWPIQGL ++FR +E+RI Y Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEDRIASY 423 Query: 420 H 420 Sbjct: 424 R 424 >gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 597 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q RI N + ++ + + R + + K+L+ RD +INE+K SGLRGRGG Sbjct: 111 FYSKQMRITLRNCGYINPDNIDEYIGRDGYQGLAKVLQDLSRDDVINEMKTSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKW F K D +++ NADE +PG DR ++ +PH ++EG I ++A+GA Sbjct: 171 GFPTGMKWEFCKKSPGD-KKFVICNADEGDPGAFMDRSLLEGDPHAILEGMAIGAYAMGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + L A+ + GLLG N + +I V GAGA++CGEETA Sbjct: 230 DEGYIYCRAEYPLAIKRLHQAIAQAEEYGLLGKNIMGTDFSFEIHVKEGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPAN GL+ P+ +NNVE+ A V I+ G +WY+ G E ++ Sbjct: 290 LMASIEGQRGMPRPRPPFPANKGLWEKPSNINNVETWANVAQIILHGGAWYASVGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M T E++ + GGI AV GG S CL Sbjct: 350 GTKVFALTGKVKNTGLVEVPMGTTIREVVFEIGGGILND-KKFKAVQIGGPSGGCLTEEH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + Y+ L G+ +G+ ++V+D T ++ F + ESCG+C PCREGT Sbjct: 409 L-DLPISYESLTAAGAIMGSGGLVVVDEDTCMVDVAKFFLEFTQAESCGKCVPCREGTKK 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G Q+ +I+ L + I+ ++C LG A P+ I+ FR E I Sbjct: 468 MLDILTRITEGKGQEGDIEKLQYLGTQIKDASLCGLGQTAPNPVLTTIRYFRHEYEAHIK 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 596 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q RI N+ + ++ + ++R + + K+L E + +I EVK SGLRGRGGA Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMKPEEVIEEVKKSGLRGRGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K + Y+V NADE +PG DR IM +PH++IEG +I +AIGA Sbjct: 170 GFPTGLKWELGRKAKGE-EKYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+Y+R E+ + L A+++ G+LG N + DI + GAGA++CGEETA Sbjct: 229 KKGFVYIRAEYPLAIKRLTVALEQARNYGILGENILGTDFSFDIEIRIGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+ GA W+S FG E ++ Sbjct: 289 LIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGAEWFSSFGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M IT E++ G G AV GG + C+PA Sbjct: 349 GTKVFALAGKINMTGLIEVPMGITLREVVYDIGG-GIPGGKKFKAVQIGGPAGGCIPAEY 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + +G+ +G+ +IVMD ++ F + ESCG+C PCR GT Sbjct: 408 L-DTPIDYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ KG + ++ L E++ + ++C LG A P+ +K FR I Sbjct: 467 MLDILDKITKGEGTEEDLVELEELAYTVRNTSLCGLGKGAPNPVLTTLKYFRDEYLAHIR 526 Query: 418 QYHRCN 423 +C Sbjct: 527 D-KKCP 531 >gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus obeum A2-162] Length = 623 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 154/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K + +I+EV SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGNIDAESIDEYIAAGGFQAMAKAFFDMSPQEVIDEVTKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + ++ Y+V N DE +PG D +M +P+ +IEG VIA++A+GA Sbjct: 196 GFPAGKKWSQVARQK-EKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ A GLLG N G + + ++ GAGA++CGE +A Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNILGSGINFHLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 315 LTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M + +I GG++ G V GG S CL Q Sbjct: 375 GTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIEDQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D +K + + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 434 I-DRPLDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V+G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 493 MLEILERIVEGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHIR 552 Query: 418 QYHRC 422 +C Sbjct: 553 D-KKC 556 >gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1] gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1] Length = 594 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 243/426 (57%), Gaps = 8/426 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58 L Q RI N+ + +SL RG + +++KI+ +G + +I EV+ SGLRGRGGA Sbjct: 106 LDRQTRIALRNIGQVDPQSLDAYRERGGYRSIEKIITEGIKPEQVIEEVRVSGLRGRGGA 165 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T +KW F + YL+ N DE +PG DR ++ +PH +EG +IA++AIGA Sbjct: 166 GFPTAVKWGF-ARSAKGEKKYLICNGDEGDPGAFMDRSLLEGDPHNALEGMLIAAYAIGA 224 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ E + A+D+ +GLLG+N +D D+ + GAGA++CGEETA Sbjct: 225 SSGYAYIRAEYPLAVEHFRKAIDDARKAGLLGNNILGSSFDFDVTIKQGAGAFVCGEETA 284 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR++PPFPA GL+G PT +NNVES+A +P I+ G + Y+ G E ++ Sbjct: 285 LIASIEGERGMPRIRPPFPAVKGLFGKPTIINNVESLANLPWIIEHGGAAYAEIGTEKSK 344 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M T E++ GG + AV GG S C+P Sbjct: 345 GTKVFALAGPIKRGGLVEVPMGTTVREVLYDIGGG-SSAGRPIKAVQLGGPSGGCIPES- 402 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++Y+ L G+ +G+ ++VMD + ++ F + ESCG+CT CR GT Sbjct: 403 LFDTPIEYEALNATGAIMGSGGMVVMDTKSCMVDIARYFLEFTQIESCGKCTFCRIGTLR 462 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ R+ G +ID L +++ + ++C LG A P+ +K FR ++ Sbjct: 463 MKELLTRICDGQGTMDDIDTLEDIAHQVRSSSLCGLGQTAPNPVLTTLKYFRDEYVAHVE 522 Query: 418 QYHRCN 423 + RC Sbjct: 523 E-KRCP 527 >gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 625 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + D + G + + K+L + + + +E+ SGLRGRGGA Sbjct: 139 FYRRQTRLVLKNCGKIDAEDIRDYIVCGGYKALAKVLMKMTPEEVCDEILKSGLRGRGGA 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + +D Y+V N DE +PG DR +M +PH ++EG +IA +A GA Sbjct: 199 GFPTGKKWKQVLMQDADI-KYVVCNGDEGDPGAFMDRSVMEGDPHQMLEGMIIAGYASGA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVRGE+ + LQ A+ + + G LG N +D DI ++ GAGA++CGE +A Sbjct: 258 REGYIYVRGEYPLAVKRLQVAIQQAHEWGFLGKNILGSNFDFDIHINKGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L +S+EG +G PR +PP GL+G PT +NNVE+ A VP I+ GA WY G + Sbjct: 318 LTQSIEGFRGMPRPRPPRTVEKGLFGKPTVLNNVETFANVPLIISNGADWYLSIGTPGSP 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G++N +E M IT ++I GIR AV GG S CL Sbjct: 378 GTKIFALTGNINNTGLIEVPMGITLRQIIFDIGAGIR-NGKKFKAVQIGGPSGGCLTEEH 436 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MD+D L+ G+ +G+ ++V+D + +++ F + ESCG+C PCREGT Sbjct: 437 L-DISMDFDSLEAAGAMVGSGGLVVLDEDSCMVEVARFFMDFTQRESCGKCVPCREGTKR 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++V G A +++ LL E+++ ++ ++C LG A P+ +K F+ + Sbjct: 496 MLEILEKIVSGNANIKDLQLLEELAEVVKIGSLCGLGKTAPNPVLTTMKYFKDEYMAHVV 555 Query: 418 QYHRCN 423 + RC Sbjct: 556 E-KRCP 560 >gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 596 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 163/426 (38%), Positives = 244/426 (57%), Gaps = 6/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q I N L +S+ + ++R + + K L E I+NEVK SGLRGRGG Sbjct: 111 FFAHQQLIALRNRGLLDAESIDEYIARDGYRALAKALTEMSPQDIVNEVKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + + Y++ NADE +PG DR I+ +PH++IEG IA+ AIGA Sbjct: 171 GFPTGLKWEFCQRTPGEI-KYVLCNADEGDPGAFMDRSILEADPHSVIEGMTIAAKAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H F+Y R E+ E L+ A+++ GLLG N G+ ++ ++ GAGA++CGEETA Sbjct: 230 HHGFVYCRAEYPLAIERLKLAIEKATEYGLLGDNILDTGFSFNLQIYQGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFPA GLY PT +NNVE+ A V I+ +G WY+ G ++ Sbjct: 290 LMRSIEGKRGMPRPRPPFPAVKGLYDKPTVLNNVETWANVAPIIIKGGDWYASIGTAGSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++GHVN VE M + +I GG+ AV GG S C+P Sbjct: 350 GTKVFALTGHVNNIGLVEVPMGTSLRTIIYDIGGGMPKKHRKFKAVQLGGPSGGCVPEQY 409 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + DY+ + + G+ +G+ +IVMD ST ++ F + ESCG+CTPCREGT Sbjct: 410 L-DLPCDYEEIIKAGAIMGSGGMIVMDDSTCMVDMARFFMEFVQDESCGKCTPCREGTRR 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++++E++ +G + ++DLL E++ I+ +C LG P+ ++ FR I Sbjct: 469 MLQILEKICEGRGEMSDLDLLEELAAMIKDSALCGLGQTGPNPVLSTLRYFRDEYVAHIV 528 Query: 418 QYHRCN 423 +C Sbjct: 529 D-KKCP 533 >gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 572 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 10/431 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q+RI N + S+ + + R + + K L ++ E+K SGLRGRGGA Sbjct: 136 LFKKQERIVLRNTLYIDPLSIEEYIGRDGYAALAKALTRMRPGEVVEEIKRSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTGMKWSF + P Y+V N DE +PG DR ++ +PH++IEG I AIGA Sbjct: 196 GFSTGMKWSFSA-AAAGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGRAIGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ E L+ A+ + GLLG + G++ DI + GAGA++CGEETA Sbjct: 255 EQGYVYVRAEYPLAIERLEHAIRKAREFGLLGKDIFGTGFNFDIEIRIGAGAFVCGEETA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR +PPFPA G++G PT +NNVE+ A +P I+ +GA W++ G ++ Sbjct: 315 LLASVEGRRGEPRPRPPFPAIEGVFGKPTVINNVETWANIPAIIFKGADWFASIGTPKSK 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M T E++ GGI + AV GG S C+PA Sbjct: 375 GTKVFALAGKITNTGIVEVPMGTTLREMVFDIGGGIPKKKE-FKAVQTGGPSGGCIPARH 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +G+ +G+ +IVMD+ T ++ F ESCG+C+PCR GT Sbjct: 434 L-DTPIDYDSLGALGAIMGSGGMIVMDQDTCMVDIAKFFLEFCVDESCGKCSPCRIGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ER+ G ++ +I+LL E++ I+ +C LG A P+ I+ FR E+ I Sbjct: 493 MHEILERISTGHGREGDIELLVELATTIKTTALCGLGQTAPNPVLSTIRYFRDEYEQHIR 552 Query: 418 QY----HRCNF 424 + C+F Sbjct: 553 DHVCVAKVCDF 563 >gi|281412285|ref|YP_003346364.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|281373388|gb|ADA66950.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 545 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 168/423 (39%), Positives = 254/423 (60%), Gaps = 6/423 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++ RI N+ + + + ++R + + K L+ +I E+K SGLRGRGGAGF Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFP 166 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F K +D Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E L+ A+++ Y G LG N G++ D+ + GAGAY+ GEETAL+E Sbjct: 226 YIYIRGEYHSSIEILKKAIEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG +++ GTK Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTDSSPGTK 345 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G+V VE M +T +LI K GG+ GG L V GGS+ + ++ Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGVEGGRK-LKVVQTGGSAGTFIGPDKL-D 403 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + G LG+ ++V D + + + F++HESCG+CTPCREGT ++ Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCAVDLALAVMRFFEHESCGKCTPCREGTRMIVN 463 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ +G +K ++D L E+++N + C LG + P+ ++ NF I + Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFRAHI-GAN 522 Query: 421 RCN 423 +C Sbjct: 523 KCP 525 >gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] Length = 592 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 165/425 (38%), Positives = 247/425 (58%), Gaps = 6/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R + N + +++ ++ + + K L R+ +IN +K SGLRGRGGAG Sbjct: 107 FYRQQSRHVLKNCGHINPENIDAYLAVEGYQGLKKALALPREEVINIIKESGLRGRGGAG 166 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + K D Y+V NADE +PG DR ++ +PH ++EG +IA++AIGA Sbjct: 167 FPTGLKWEYTFKAPGD-RKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMLIAAYAIGAR 225 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ + L+ A+ + G G + ++ + GAGA++CGEETAL Sbjct: 226 EGYIYVRAEYPLAVQRLRIALAQARERGFCGERILGTDFSCELYIREGAGAFVCGEETAL 285 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L S++G++G PR +PPFPA GL+G PT +NNVE+ A VP ILRRGA WY+ G E ++G Sbjct: 286 LASIQGERGMPRPRPPFPARQGLWGQPTNINNVETYANVPLILRRGAGWYASLGTEKSKG 345 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G V VE M IT E+I GGI AV GG S CLPA + Sbjct: 346 TKIFALTGKVKNTGLVEVPMGITLREIIFNIGGGILEDRG-FKAVQIGGPSGGCLPAEHL 404 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L G+ +G+ ++VMD ST +++ F + ESCG+CTPCREG M Sbjct: 405 -DLPVDYDSLTAAGAMMGSGGLVVMDDSTCMVEVARFFLNFTQAESCGKCTPCREGIQQM 463 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ R+ +G ++ +++ L +++ I+G +C LG A P+ ++ FR E I Sbjct: 464 LAILTRITRGQGREGDLEQLERLARVIKGTALCGLGQTAPNPVLSTLRYFRAEYEAHIRD 523 Query: 419 YHRCN 423 HRC Sbjct: 524 -HRCP 527 >gi|150021053|ref|YP_001306407.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149793574|gb|ABR31022.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 538 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 165/421 (39%), Positives = 251/421 (59%), Gaps = 7/421 (1%) Query: 2 LTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 LT + +I T N+ + K++ + ++ + + K + II E+K SGLRGRGGAGF Sbjct: 103 LTKEVKIVTRNIGKIDPKNIEEYIANDGYFALAKAFKMKPHEIIEEIKESGLRGRGGAGF 162 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F K SD Y+V NADE EPGT KDR IM +PH++IE +IA +A+GA Sbjct: 163 PTGLKWEFAFKTQSD-QKYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATK 221 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E+++ A+ + Y G LG N ++ D+ V GAGAYICGEETALL Sbjct: 222 GYIYIRGEYYGSVENIKKAIKDAYEYGFLGENILNSNFNFDLSVRLGAGAYICGEETALL 281 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG G+PRLKPP+P GL+G PT +NNVE++A VP I+ GA W+ FG EN+ GT Sbjct: 282 ESIEGNAGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAKWFKQFGTENSPGT 341 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F +G++N VE M +T EL+ G D L V GG + + + Sbjct: 342 KVFCFTGNLNNRGIVELPMGVTVRELLVHAGG---VSGDKLKMVQTGGIAGTFIDESK-F 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD + LG+ ++ ++ + ++ + F++HESCG+CTPCREGT ++ Sbjct: 398 DIPLDYDSFAKYSVSLGSGVILGVNNNHCVVDIAKNVMEFFRHESCGKCTPCREGTKMVV 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++++++ K A K +++ L E++ + +C LG + P+ LI NF+ + I+ Sbjct: 458 KILDKMSKLEANKEDLERLVEIANTAKETALCGLGQSFPVPLLSLINNFKEEFLDHIENK 517 Query: 420 H 420 + Sbjct: 518 N 518 >gi|159027690|emb|CAO89555.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 535 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 150/423 (35%), Positives = 250/423 (59%), Gaps = 7/423 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q +I N + + + ++ G + ++ K L E ++ E+ SGLRGRGGA Sbjct: 112 FFSHQVKIVRENSGKIDPDRIEEYIAVGGYQSLYKALYEMTPAQVVEEITKSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K + Y++ NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 172 GYPTGLKWATVAKQP-GKQKYVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + LQ A+++ GL+GS + +D + + GAGA++CGEETA Sbjct: 231 DHGYIYVRAEYPLAIDRLQKAINQAKKFGLMGSQVFESTFDFKVDIRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G PR +PP+PA GL GCPT +NNVES A + I+R GA+WY+ G ++ Sbjct: 291 LIHSIEGGRGTPRTRPPYPAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTATSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G ++ +E M IT E++E+ GG+ G + AV GG S C+PA Sbjct: 351 GTKIFALTGKISNNGLIEVPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPAN- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++GS +G+ ++VMD ST ++K F + ESCG+C PCR GT Sbjct: 408 LLDTPVDYESLAKLGSMMGSGGMVVMDDSTSMVKVAKFYMEFCREESCGKCIPCRTGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ +++ G A +++ L + + ++ ++C LG +A PI ++ F+ + Sbjct: 468 MFELLAKIIDGKADIHDLENLEHLCQMVKETSLCGLGQSAPNPILSTLQYFKEEYLALLQ 527 Query: 418 QYH 420 + Sbjct: 528 ETK 530 >gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 631 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R N + + +++ ++ + + K L + ++ E+KASGLRGRGG Sbjct: 146 FYKKQKRTALRNCGLINPEDINEYIAFDGYKALAKTLTTMTPEDVVAEIKASGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKW F K + Y+V NADE +PG DR I+ +P+ LIE +I+ +A+GA Sbjct: 206 GFPTGMKWDFTAKAE-GKEKYVVCNADEGDPGAFMDRSILEGDPNALIEAMIISGYAVGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ L A+ + GLLGSN + D+ + GAGA++CGEETA Sbjct: 265 QWGYVYVRAEYPIAVGRLDLAIKQAREKGLLGSNILGTDFSFDMEIRLGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR +PPFPA GL+G PT +NNVE+ A +P I+ GA + G E ++ Sbjct: 325 LLNSIEGKRGMPRPRPPFPAVKGLWGKPTLINNVETFANIPQIILHGAEEFIKTGTEKSK 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N+ VE M T E++ + GGI G AV GG S C+ Sbjct: 385 GTKVFALGGKINHTGLVEIPMGTTLREIVYEIGGGIPNG-KAFKAVQTGGPSGGCISVEH 443 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCREGT Sbjct: 444 L-DTPIDYDNLIALGSMMGSGGMIVMDEDNCMVDIARFFLDFTVDESCGKCTPCREGTKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G ++ +I+ L ++++I+ ++C LG A PI +K FR E I Sbjct: 503 MLEILERITEGKGKEGDIERLESLAQSIKISSLCGLGQTAPNPILSTLKYFRHEYEAHI- 561 Query: 418 QYHRCN 423 Q +C Sbjct: 562 QDKKCP 567 >gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA] gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA] Length = 596 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + G + + K+L E D +I + +GLRGRGGA Sbjct: 110 FYKKQHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + +D Y+ NADE +PG DR ++ +PH L+E IA +AIG+ Sbjct: 170 GFPTGLKWKLCKQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGS 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + L A+ + LLG N G+D D+ + GAGA++CGEETA Sbjct: 229 NQGYVYVRAEYPIAVDRLNIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR +PPFPA GL+G P+ +NNVE+ A +P I+ G W++ G E ++ Sbjct: 289 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T +I++ GGI A GG S C+PA Sbjct: 349 GTKVFALGGKINNTGLVEVPMGTTLRTVIDEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD ++ F ESCG+CT CR GT Sbjct: 408 -FDIPIDYDNLLSIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ KG A+ ++D L E+ ++ ++C LG A P+ + FR E I Sbjct: 467 MLEILEKITKGTAEMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIK 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-RRCP 531 >gi|170288518|ref|YP_001738756.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|170176021|gb|ACB09073.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] Length = 545 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 171/423 (40%), Positives = 253/423 (59%), Gaps = 6/423 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++ RI N+ + + + ++R + + K L+ +I E+K SGLRGRGGAGF Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFP 166 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F K +D Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E L+ AV+ Y G LG N G++ D+ + GAGAY+ GEETAL+E Sbjct: 226 YIYIRGEYHSSIEILKKAVERAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GTK Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTK 345 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G+V VE M +T +LI K GGI GG L V GGS+ + ++ Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK-LKVVQTGGSAGTFIGPDKL-D 403 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + G LG+ ++V D + ++ + F++HESCG+CTPCREGT ++ Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVN 463 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ +G +K ++D L E+++N + C LG + P+ ++ NF I Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFRAHI-GAD 522 Query: 421 RCN 423 +C Sbjct: 523 KCP 525 >gi|15643000|ref|NP_228042.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|4980726|gb|AAD35319.1|AE001707_6 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] Length = 545 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 172/423 (40%), Positives = 255/423 (60%), Gaps = 6/423 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 ++ RI N+ + + + ++R + + K L+ II E+K SGLRGRGGAGF Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEIIEEIKRSGLRGRGGAGFP 166 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F K +D Y++ NADE EPGT KDR IM +PH+LIEG +IA +A+GA Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ E L+ AV++ Y G LG N G++ D+ + GAGAY+ GEETAL+E Sbjct: 226 YIYIRGEYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK +PRLKPP+P GL+G PT VNNVE+ VP I+ GA W+ FG E++ GTK Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTK 345 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G+V VE M +T +LI K GGI GG L V GGS+ + ++ Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK-LKVVQTGGSAGTFIGPDKL-D 403 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + G LG+ ++V D + ++ + F++HESCG+CTPCREGT ++ Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVN 463 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ +G +K ++D L E+++N + C LG + P+ ++ NF + I Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFKAHI-GAD 522 Query: 421 RCN 423 +C Sbjct: 523 KCP 525 >gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 595 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 157/425 (36%), Positives = 238/425 (56%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R+ N + ++ + ++R + + K+L ++ +INEVKASGLRGRGG G Sbjct: 111 FYKKQMRVALRNCGFIDPDNIEEYIARDGYAALAKVLTMTQEEVINEVKASGLRGRGGGG 170 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F K +D Y+V NADE +PG DR I+ +P++++E I +AIGA Sbjct: 171 FPTGLKWEFAYKNKAD-QKYVVCNADEGDPGAFMDRSILEGDPNSIVEAMAICGYAIGAT 229 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +Y+R E+ + L++A+ GLLG N + DI + GAGA++CGEETAL Sbjct: 230 KGLVYIRAEYPLAIKRLESAIHSAREYGLLGDNIMGSDFCFDIDIRFGAGAFVCGEETAL 289 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG +G+P KPPFPA G +G PT VNNVE+ A +P I+ +GA W+S G E ++G Sbjct: 290 IHSMEGMRGEPTTKPPFPAASGYWGKPTNVNNVETFANIPVIILKGAEWFSKIGTEKSKG 349 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G +N +E M IT E+I GGI+ AV GG S CL + Sbjct: 350 TKVFALAGKINNVGLIEVPMGITLREVIYDIGGGIK-NGKQFKAVQTGGPSGGCLTVKDL 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L GS +G+ +IV+D + F ESCG+CTPCR GT + Sbjct: 409 -DTPIDFDNLIAKGSMMGSGGMIVLDEDDCMPAVAKFYLEFTAEESCGKCTPCRIGTKRL 467 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++E++ G + ++ +L E+S+ I+ +C LG A P+ + F I Sbjct: 468 LEILEKITAGKGSEEDLKVLKELSEVIKDTALCGLGQTAPNPVLSTLTTFEDEYLAHIYD 527 Query: 419 YHRCN 423 H+C Sbjct: 528 -HKCP 531 >gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] Length = 628 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 140/427 (32%), Positives = 237/427 (55%), Gaps = 7/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + +++ ++ + + K LE +I E+K SGLRGRGGA Sbjct: 141 FYKKQLRIALRNCGHINPEDITEYIANDGYLALAKCLEEMTPQEVIEEMKKSGLRGRGGA 200 Query: 59 GFSTGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW K + ++V NADE +PG DR ++ +P++++E IA +A+G Sbjct: 201 GFPTGVKWESASKNPAVNGKKFIVCNADEGDPGAFMDRSLLEGDPNSVLEAMAIAGYAVG 260 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY+R E+ + L+ A+ + +G+LG N G++ I + +GAGA++CGE T Sbjct: 261 ASQGYIYIRAEYPLAIDRLKIAIAQAEEAGVLGDNILGTGFNFKIELKYGAGAFVCGEGT 320 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G+PR+K + GL+ PT+VNNVE+ VP I+ +GA W++ +G E++ Sbjct: 321 ALINSIEGKRGEPRMKTFSSSKHGLWQAPTSVNNVETFGNVPAIINKGADWFASYGTEDS 380 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F++ G VN VE M T E++ + GGI G + AV GG S C+ A Sbjct: 381 KGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPNGKE-FKAVQTGGPSGGCISAR 439 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+ L +GS +G+ ++V+D + ++ F ESCG+CTPCR G Sbjct: 440 DL-DTPIDFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFTVDESCGKCTPCRIGNK 498 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++ ++ G + ++ L +++ I+ ++C LG A P+ + F + Sbjct: 499 RLLEMLTKICDGKGTEEDLADLKDLALTIKNTSLCGLGKCAPNPVLSTLDCFYDEYLAHV 558 Query: 417 DQYHRCN 423 +C Sbjct: 559 KD-KKCP 564 >gi|255004355|ref|ZP_05279156.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Virginia] Length = 430 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 262/422 (62%), Positives = 315/422 (74%), Gaps = 2/422 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + +D FTNL G + L + RG WD +ILE G D II EVK SGLRGRGGAGF Sbjct: 1 MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60 Query: 62 TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KWSFMPK RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G Sbjct: 61 TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L A+DE Y GL+G N+ GYD+DI +H GAGAYICGEE+A L Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV I+RRG+ W+S GR NN GT Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+M++ + ++ EID L +V+ IEG TICAL DAA WPIQGL ++FR ++E+RI Sbjct: 361 RMMKKNGRWNGKRWEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRIGNK 420 Query: 420 HR 421 + Sbjct: 421 GK 422 >gi|91202657|emb|CAJ72296.1| similar to nuoF subunit of the NADH:ubiquinone oxidoreductase [Candidatus Kuenenia stuttgartiensis] Length = 552 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 162/422 (38%), Positives = 250/422 (59%), Gaps = 6/422 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I N + K +S+ + R + ++K+L D +I EVKASGLRGRGGA Sbjct: 131 FYKKQKKIVLRNCGVIDPKKISEYILRNGYAALEKVLSGMSPDKVIEEVKASGLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW D Y++ N DE +PG DR ++ +PH++IEG +I +AIG+ Sbjct: 191 GFPTGKKWESAKNAVGD-EKYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGS 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IYVR E+ E ++ A+ + + GLLG N G+ DI V GAGA++CGEETA Sbjct: 250 GKGIIYVREEYPIAVEHVKIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE++A +P I+ GA ++S G E+++ Sbjct: 310 LIASIEGERGMPRPRPPFPAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M T EL+ + GGI A GG S C+P Sbjct: 370 GTKIFALAGSVNNTGLVEVPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPEQY 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ +KE+G+ +G+ +I+MD +T +++ F ++ESCG+CTPCR GT Sbjct: 429 L-DTPIDYESVKEVGAIMGSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKR 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ G ++ +I LL E+++ ++C LG +A P+ ++ F+ EE I Sbjct: 488 MLEILTRIANGEGEREDIGLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIA 547 Query: 418 QY 419 + Sbjct: 548 KK 549 >gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 595 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 232/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + ++ + K+L E D +I + SGLRGRGG Sbjct: 109 FYKKQHRIALRNCGVINPENIDEYIGTRGYEALGKVLTEMTPDDVIQVLLDSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW +D Y+ NADE +PG DR ++ +PH ++E IA +AIGA Sbjct: 169 GFPTGLKWKLAKGNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG+N + D+ + GAGA++CGEETA Sbjct: 228 TQGYIYVRAEYPIAVARLEIAIKQAREYGLLGNNIFGTDFSFDVGLRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ G+ W++ G E ++ Sbjct: 288 LMTSIEGNRGEPRPRPPFPAQKGLFQKPTILNNVETYANIPQIILNGSEWFASMGTEKSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + VE M T E++E+ GGI G A GG S C+P Sbjct: 348 GTKVFALGGKIKNTGLVEIPMGTTLREVVEQIGGGIPNG-KKFKAAQTGGPSGGCIPVEH 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 407 -FDIPIDYDNLISIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKR 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ KG ++D L E+ I+ ++C LG A P+ ++ FR + Sbjct: 466 MLEILEKITKGNGTLEDLDKLEELCYYIKDNSLCGLGQTAPNPVLSTLRYFRDEYVAHVV 525 Query: 418 QYHRCN 423 +C Sbjct: 526 D-KKCP 530 >gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM 10507] gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM 10507] Length = 584 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 L+ Q R+ N + + + + +++G ++ K++ +D +I VK SGLRGRGGA Sbjct: 99 FLSQQRRVVLRNCGLINPEKIDEYIAKGGYEAAKKVITTMTQDEVIEVVKVSGLRGRGGA 158 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ + K + Y+V NADE +PG DR ++ +PH+L+EG +I FA GA Sbjct: 159 GFPTWFKWNAI-KSNAGAQKYMVCNADEGDPGAFMDRSVLEGDPHSLLEGMIIGGFAAGA 217 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 IY R E+ L+ A+++ G LG N + DI + GAGA++CGEETA Sbjct: 218 TEGVIYCRAEYPLAIARLEIAMEQAREKGFLGKNLFGTDFSFDIRIKAGAGAFVCGEETA 277 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A VP I G ++ G ++ Sbjct: 278 LIASLEGERGMPRLKPPFPAAKGYWKLPTNINNVETYANVPWIFANGGEAFAAMGTAQSK 337 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M + E+I GGI+ N AV GG S C+PA Q Sbjct: 338 GTKVFALAGKIKKGGLVEVPMGLPLKEVIYGIGGGIKND-KNFKAVQMGGPSGGCIPA-Q 395 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + Y+ + + G+ +G+ +IVMD +T ++ F K ESCG+C CR GT Sbjct: 396 LIDTPVTYEDINKTGAIVGSGGMIVMDENTCMVDMARYFLDFTKKESCGKCNYCRIGTKR 455 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +I+LL E++ I+ +C LG A P+ I+ FR E+ I Sbjct: 456 MLEILERITRGEGKDGDIELLEELAGKIKDGAMCGLGQTAPNPVLTTIRYFRNEYEDHIY 515 Query: 418 QYHRCN 423 H C Sbjct: 516 N-HTCT 520 >gi|302879336|ref|YP_003847900.1| NADH-quinone oxidoreductase, F subunit [Gallionella capsiferriformans ES-2] gi|302582125|gb|ADL56136.1| NADH-quinone oxidoreductase, F subunit [Gallionella capsiferriformans ES-2] Length = 421 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 210/416 (50%), Positives = 270/416 (64%), Gaps = 7/416 (1%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67 T + Q +L + + G + + KIL + D II EVK S LRGRGGAGF TG+KWS Sbjct: 8 TTMDFDQPWTLENYLKVGGYQALRKILTEQTSPDAIIAEVKLSALRGRGGAGFPTGLKWS 67 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + Y+V N+DE EPGTCKD DIM + PH LIEG IA++ + + Y+ G Sbjct: 68 FMPRSFAG-DKYIVCNSDEGEPGTCKDWDIMLYNPHLLIEGMAIAAYTMNVKTGYNYIHG 126 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E ++ A + A+G LG N LG+ D+ H G GAYICGEETALLES+EGKK Sbjct: 127 EIFEAYERMEEACELARAAGFLGDNIMGLGFSFDLHNHLGYGAYICGEETALLESIEGKK 186 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ GLYG PTT+NN E+ A +P I+ G + G+ NN GTKLFS+SG Sbjct: 187 GQPRFKPPFPASFGLYGKPTTINNTETFASIPYIINNGGKAFLELGKPNNGGTKLFSVSG 246 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HVN P E M F +L+E G L AVIPGGSS+P L M MDYD Sbjct: 247 HVNNPGNFEVPMGTPFAKLLEMAGG--VRNGHKLKAVIPGGSSMPVLTGEVMMDLTMDYD 304 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 +++ GSGLG+ AVIVMD + +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 305 SIQKAGSGLGSGAVIVMDETVCMVRALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIE 364 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 G + ++DLL + +NI GRTICALG+AA WP+QG++KNFR E I ++ RC Sbjct: 365 HGQGRPEDLDLLLSIGENIAGRTICALGEAAVWPVQGMLKNFRAEFEYHI-EHKRC 419 >gi|220934167|ref|YP_002513066.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995477|gb|ACL72079.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 425 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 217/417 (52%), Positives = 277/417 (66%), Gaps = 8/417 (1%) Query: 7 RI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTG 63 RI FT L + +L + G + KIL + ++ +I EVK S LRGRGGAGF TG Sbjct: 3 RICFTTLQFDEPWTLESYLKVGGYQAWKKILTEKMSQEDVIEEVKKSNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSFMP+ Y+V N+DESEPGTCKDRDI+R PH L+EG I +AIGA + Sbjct: 63 LKWSFMPRNAPG-QKYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIGGYAIGATVGYN 121 Query: 124 YVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGEF+ E + AV E Y G LG + G D D+ GAGAYICGEETALLES Sbjct: 122 YMRGEFMDEPYQRFAQAVREAYEQGFLGKDILGSGVDFDLYPTLGAGAYICGEETALLES 181 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPAN GLYG PTT+NN ES++ +P+I+R G W++ G + G KL Sbjct: 182 LEGKKGQPRFKPPFPANFGLYGRPTTINNTESLSSIPSIIREGGDWFAALGIPKSGGEKL 241 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SGHVN P E + F +L+E G + G L AVIPGGSSVP +P M A Sbjct: 242 FSVSGHVNKPGNFEIPLGTPFKDLLEMAGGVLGG--RKLKAVIPGGSSVPVVPGDVMLTA 299 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD +TD+++A+ R+S FY ESCGQCTPCREGTGW+ R+ Sbjct: 300 NMDYDSIAKAGSMLGSGAVIVMDETTDMVRALQRISRFYFSESCGQCTPCREGTGWLYRM 359 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R+V+G + +++ L +V+ IEGRTICALGDAAA P++ +K+FR E I Sbjct: 360 LTRIVEGKGRPEDLERLDDVASKIEGRTICALGDAAAMPVRSFVKHFRHEFEYYIQH 416 >gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 572 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + S+ + + R + + ++L R+ ++ E+K SGLRGRGGA Sbjct: 136 FFNRQKRIVLRNCGIIDPLSIEEYIGRDGYTALARVLNGMTREQVVEEIKKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + D P Y+V N DE +PG DR ++ +PH+++EG I +A+GA Sbjct: 196 GFPTGLKWQFTLQAE-DEPKYVVCNGDEGDPGAFMDRSVLEGDPHSVLEGMAIGGYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ ++ AA+ GLLG++ G+ D+ + GAGA++CGEETA Sbjct: 255 SKGYAYIRAEYPLAIKNFGAAIKSAREMGLLGTDILDSGFSFDVEIRVGAGAFVCGEETA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ GK+G+PR +PPFPA GL+ PT +NNVE+ A + I+ RG WY+G G E ++ Sbjct: 315 LLHSIAGKRGEPRPRPPFPAQCGLFDKPTVINNVETWANIAPIILRGGDWYAGIGTEKSK 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE + T E++ GG++ +L A+ GG S +PA Sbjct: 375 GTKVFALAGKIVNTGLVEVPLGTTLREVVYDIGGGMK-NGKSLKAIQSGGPSGGAIPAEY 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L + S +G+ +IV+D + ++ F + ESCG+CTPCR GT Sbjct: 434 I-DTPIDYEALAALDSIMGSGGMIVLDEDSCMVDVARFFMDFVQDESCGKCTPCRIGTRR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ RL +G A K +++LL E++ ++ +C LG A P+ +++R + Sbjct: 493 MLEILTRLTQGRATKEDVELLIELANVVKKTALCGLGQTAGNPVLSTTRHYRHEYDRHAV 552 Query: 418 QYHRCN 423 + +C Sbjct: 553 E-KQCP 557 >gi|73982779|ref|XP_864317.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 5 [Canis familiaris] Length = 424 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 252/421 (59%), Positives = 301/421 (71%), Gaps = 41/421 (9%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKH------------------------------- 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM + Sbjct: 304 ---------AAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 354 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 355 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 414 Query: 421 R 421 + Sbjct: 415 Q 415 >gi|282895630|ref|ZP_06303755.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Raphidiopsis brookii D9] gi|281199324|gb|EFA74189.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Raphidiopsis brookii D9] Length = 533 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 150/421 (35%), Positives = 242/421 (57%), Gaps = 6/421 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q + N + + + ++ + + ++L E ++ + SGLRGRGGA Sbjct: 116 FFTKQLPIVLENSGRVDPERIQSYIAANGYQALYQVLREMKPTEVVEVITKSGLRGRGGA 175 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW + K S +++ NADE +PG DR ++ +PH ++EG IA+++IGA Sbjct: 176 GYPTGLKWGTVAKS-SGAKKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYSIGA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+ + G+LG+N + +D I + GAGAY+CGEETA Sbjct: 235 NQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKIEIRIGAGAYVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+R GA W++ G E ++ Sbjct: 295 LMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRNGAEWFANIGTEKSK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M T E++E+ GGI G AV GG S C+PA Sbjct: 355 GTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDGG-MAKAVQTGGPSGGCIPASA 413 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L +GS +G+ +IVMD+ST+++ F ESCG+C PCR GT Sbjct: 414 -FTTPVDYESLSALGSMMGSGGMIVMDQSTNMVDVARFFMEFCMDESCGKCIPCRVGTVQ 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ R+ KG + ++ LL E+ ++ ++C LG +A P+ ++ FR I Sbjct: 473 LHDLLTRISKGKGTQNDLHLLEELCDMVKYTSLCGLGQSAPNPVFSTLRYFREEYLALIK 532 Query: 418 Q 418 Q Sbjct: 533 Q 533 >gi|251771122|gb|EES51706.1| NADH dehydrogenase, subunit F [Leptospirillum ferrodiazotrophum] Length = 1059 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 159/425 (37%), Positives = 242/425 (56%), Gaps = 8/425 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 Q++I + G + S+ D ++ + ++K+L + +I V SGLRGRGGAG Sbjct: 117 FRKQNKIVSRRCGVIDPSSIDDYLATNGYKALEKVLGGMTPEQVIEVVTISGLRGRGGAG 176 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-A 118 F TG+KW F + D Y+V NADE +PG DR ++ +PH+++EG IA+FAIG A Sbjct: 177 FPTGLKWKFTLQSQGD-EKYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMTIAAFAIGHA 235 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + L A+ + G LG+N DI V GAGAY+CGEETA Sbjct: 236 KKGYIYCRAEYPHAIKLLNRAIGQARERGYLGNNILGTSLSFDIEVKEGAGAYVCGEETA 295 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL SL G +G P KPPFPA G++G PT +NNVE++A +P IL G WY+ FG E + Sbjct: 296 LLASLMGDRGMPWPKPPFPAQSGVWGKPTVINNVETLANIPHILLGGGEWYASFGTEKTK 355 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G + +E + T E++ + GG+ G A GG S C+P Sbjct: 356 GTKTFALTGKIKRTGLIEVNAGTTLKEIVYEIAGGMSGT-KKFKAAQLGGPSGGCIPGS- 413 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L G+ +G+ +IV+D + I+ F K ESCG+CTPCR+GT Sbjct: 414 LIETPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKV 473 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +++D L +S ++ ++C LG AA P+ I+ FR E+ I Sbjct: 474 MLDMIERISEGRGEMKDLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIK 533 Query: 418 QYHRC 422 + +C Sbjct: 534 R-KKC 537 >gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 639 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 240/426 (56%), Gaps = 8/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + + ++ G + ++ K E D II E+K SGLRGRGGA Sbjct: 146 FFRYQKRLVLRNSGIINPEDIEEYIAVGGYKSLFKAFKEMNPDEIIEEIKKSGLRGRGGA 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y++ NADE +PG +R+ M +PH +IEG +I + IGA Sbjct: 206 GFPTGLKWEFAKKEKSD-VKYVICNADEGDPGAYMNRNEMESDPHMIIEGMIICGYTIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + IYVR E+ E LQ A+D+ + G LG + G+D DI + GAGA++CGEETA Sbjct: 265 NEGIIYVRAEYPLAIERLQKAIDDARSLGFLGKDILGTGFDFDITIVKGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK G+P+ +PPFPA GL+G PT +NNVE+ + +P I+ +G W+S FG E + Sbjct: 325 LIASIEGKAGRPKPRPPFPAQKGLWGKPTNINNVETWSNIPIIVEKGGDWFSKFGTEKST 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V VE + ++I + AV GG S C+P+ Sbjct: 385 GTKVFSLVGKVENVGLVEVELGTPVRKIIYDIG--GGTKKGKIKAVQTGGPSGGCIPSK- 441 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L E+GS +G+ V+VMD T ++ F ESCG+C PCREG Sbjct: 442 LFDTPVDYEHLAEVGSIMGSGGVVVMDEDTCMVDTAKFFLDFSVDESCGKCVPCREGLTH 501 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++ + KG A +++ L E+S+ ++ ++C LG A P+ ++ F E + Sbjct: 502 MYEILDNITKGKASIEDVETLKELSETVKTTSLCGLGQTAPNPVLTTLEYFYEEYIEHVV 561 Query: 418 QYHRCN 423 RC Sbjct: 562 N-KRCP 566 >gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans SSM1] gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans SSM1] Length = 596 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + + + + + D ++ G ++ + K+L E + +I EVK SGLRGRGG Sbjct: 112 FYKLQKRYVLADCGKVDPEDIDDYIAHGGYEAIKKVLKEMTPEEVIEEVKKSGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW+F D YL+ NADE +PG DR I+ PH +IEG +IA++AIG Sbjct: 172 GFPTGLKWTFCRASKGD-LKYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGC 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + ++ A+ G LG N ++ + + GAGA++CGEETA Sbjct: 231 KEGYIYCRAEYPLAIKRVKKALKIAEERGFLGKNILGTDFEFHLHLKEGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G P+ VNNVE+ A +P I+ GA WY+ G E ++ Sbjct: 291 LIASIEGERGMPRPRPPFPAVKGLWGKPSNVNNVETFANLPLIINNGADWYASIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++SG V +E M +T +L+ GGI + AV GG S CLP Sbjct: 351 GTKIFALSGKVKSTGLIEVPMGVTVRQLVFDVGGGIPKKRK-IKAVQLGGPSGGCLPES- 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L G+ +G+ V+VMD + ++ F + ESCG+C PCR GT Sbjct: 409 LLDTPIDYDSLIAAGAMMGSGGVVVMDETNCMVNVAKFFLTFTQRESCGKCIPCRIGTKT 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G ++ +I+LL ++ +I+ ++C LG A P+ IK FR E I Sbjct: 469 MLDILERICAGEGREGDIELLESLAMDIKTASLCGLGQTAPNPVLTTIKYFRHEYEAHIK 528 Query: 418 QYHRCN 423 +C Sbjct: 529 D-RKCP 533 >gi|91200210|emb|CAJ73254.1| strongly similar to proton-translocating NADH dehydrogenase I, 51 kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis] Length = 552 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 162/422 (38%), Positives = 250/422 (59%), Gaps = 6/422 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I N + K +S+ + R + ++K+L D +I EVKASGLRGRGGA Sbjct: 131 FYKKQKKIVLRNCGVIDPKKISEYILRNGYVALEKVLSGMSPDKVIEEVKASGLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW D Y++ N DE +PG DR ++ +PH++IEG +I +AIG+ Sbjct: 191 GFPTGKKWESAKNAVGD-EKYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGS 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IYVR E+ E ++ A+ + + GLLG N G+ DI V GAGA++CGEETA Sbjct: 250 GKGIIYVREEYPIAVEHVKIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE++A +P I+ GA ++S G E+++ Sbjct: 310 LIASIEGERGMPRPRPPFPAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M T EL+ + GGI A GG S C+P Sbjct: 370 GTKIFALAGSVNNTGLVEVPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPEQY 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ +KE+G+ +G+ +I+MD +T +++ F ++ESCG+CTPCR GT Sbjct: 429 L-DTPIDYESVKEVGAIMGSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKR 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ G ++ +I LL E+++ ++C LG +A P+ ++ F+ EE I Sbjct: 488 MLEILTRIANGEGEREDIGLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIA 547 Query: 418 QY 419 + Sbjct: 548 KK 549 >gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] Length = 619 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 246/423 (58%), Gaps = 6/423 (1%) Query: 2 LTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q RI N + ++ ++RG + ++ L+ + +I ++K+SGLRGRGGAGF Sbjct: 130 MKPQVRRILRNCGLIDPSNIKHYIARGGYSGLNSALKTKPEKVIEQMKSSGLRGRGGAGF 189 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T MKW F S YL+ NADE +PG +R ++ +PH+++EG VIAS+AIG Sbjct: 190 PTWMKWQFCVDFDS-VEKYLICNADEGDPGAFMNRSLLESDPHSVLEGIVIASYAIGVKE 248 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY R E+ E L+ A+ + GLLG N + G+D++I + GAGA++CGEETAL+ Sbjct: 249 AYIYCRAEYPLALERLKQAISQMRDVGLLGKNILETGFDLEIKIKEGAGAFVCGEETALI 308 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G PR +PPFP GL+G PT +NNVE++A V I++ G + FG ++GT Sbjct: 309 ASIEGKRGMPRTRPPFPTTAGLWGKPTVINNVETMASVSLIMQTGHEQFKEFGTVESKGT 368 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K FS+ G+V P +E + T E+I GGI N AV GG S CLP + Sbjct: 369 KTFSLVGNVKKPGLIEVPLGTTLREVIYDIGGGI-NNEGNFKAVQIGGPSGGCLPEEFL- 426 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD L G+ +G+ ++VMD+++ ++ F ++ESCG+C PCR GT M+ Sbjct: 427 DTKIDYDSLTMAGAIMGSGGLVVMDQNSCMVDVARYFLEFIQNESCGKCVPCRLGTKQML 486 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ + +G ++ + DLL E+S+ I ++C LG + PI +K F I+ Sbjct: 487 DILSDITQGKGKQGDNDLLRELSQGIRDGSLCGLGQTSPNPILTTLKYFEDEYISHIED- 545 Query: 420 HRC 422 RC Sbjct: 546 KRC 548 >gi|166362850|ref|YP_001655123.1| bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] gi|166085223|dbj|BAF99930.1| bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] Length = 535 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 148/423 (34%), Positives = 249/423 (58%), Gaps = 7/423 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q +I N + + + ++ G + ++ K L E ++ E+ SGLRGRGGA Sbjct: 112 FFSHQVKIVRENSGKIDPDRIEEYIAVGGYQSLYKALYEMTPAQVVEEITQSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K + Y++ NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 172 GYPTGLKWATVAKQP-GKQKYVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + LQ A+++ GL+GS + +D + + GAGA++CGEETA Sbjct: 231 DHGYIYVRAEYPLAIDRLQKAINQAKKFGLMGSQVFESTFDFKVDIRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G PR +PP+PA GL GCPT +NNVES A + I+R GA+WY+ G +++ Sbjct: 291 LIHSIEGGRGTPRTRPPYPAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTASSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT E++E+ GG+ G + AV GG S C+PA Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPAN- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++GS +G+ ++VMD +T +++ F + ESCG+C PCR GT Sbjct: 408 LLDTPVDYESLAKLGSMMGSGGMVVMDDTTSMVEVAKFYMEFCREESCGKCIPCRTGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ +++ A +++ L + + ++ ++C LG +A PI +K F+ + Sbjct: 468 MFELLAKIIARKADIHDLENLEHLCQMVKETSLCGLGQSAPNPILSTLKYFKEEYLALLQ 527 Query: 418 QYH 420 + Sbjct: 528 EIK 530 >gi|300245619|gb|ADJ93867.1| putative aromatic-degrading protein [Clostridia bacterium enrichment culture clone BF] Length = 634 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 149/421 (35%), Positives = 238/421 (56%), Gaps = 5/421 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 +Q + + + ++ ++R + + K L ++ EVK S LRGRGGAGF TG Sbjct: 140 EQKVVLADCGLIDPDNIDHYLARDGYAALAKALTGKPAAVVAEVKDSKLRGRGGAGFPTG 199 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + P Y++ NADE +PG DR ++ PH ++EG ++A++A+GA+ +I Sbjct: 200 IKWETCM-NAAGSPKYVICNADEGDPGAFVDRALLESNPHQMLEGLILAAYAVGANEGYI 258 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ L A+++ GLLG + +++DI V G+GA++CGEETAL+ S+ Sbjct: 259 YVRAEYPLAITRLHTAIEQAREKGLLGESILGSDFNLDITVFQGSGAFVCGEETALIASI 318 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG G P +PPFPA GL G PT +NNV++++ +P I+R GA W+ G + GT +F Sbjct: 319 EGNAGIPTHRPPFPAVSGLRGKPTIINNVKTLSYIPNIIRNGADWFKSIGTPGSPGTAVF 378 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +++G V E M T L+ GI+ AV GG S CLP + Sbjct: 379 ALAGKVVGTGLAEVPMGTTIRTLVYDVGNGIKND-KQFKAVQIGGPSGGCLPESAI-DLP 436 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D LKE G+ +G+ ++V+D +++ F +HESCG+CT CR GT M+ ++ Sbjct: 437 IDFDSLKEAGAMMGSGGMVVLDEDDCMVEIARFFLEFTQHESCGKCTFCRLGTKQMLDIL 496 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +G + +IDLL+E++++I+ ++CALG A P+ I+ FR E I + RC Sbjct: 497 TDITQGRGKPEDIDLLWELAEDIKIGSLCALGKTAPNPVLTTIRFFRNEYEAHIQE-GRC 555 Query: 423 N 423 Sbjct: 556 P 556 >gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 636 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 169/426 (39%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLY-GLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ L + KSL D ++ G + + K L + + +I EVK + LRGRGGA Sbjct: 131 FYKNQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLKMTPEQVIGEVKQAKLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF +G KW F D Y+VVN DE +PG DR +M P T++EG +I ++AIGA Sbjct: 191 GFPSGTKWEFARNAPGD-QKYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ ++L A+ + G LG N G+D + VH GAGA+ICGEET+ Sbjct: 250 SEGYIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETS 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEGK G+P+ +PPFPA GL+G PT +NNVE+ A +P I+ +GA ++S G E+++ Sbjct: 310 LLQSLEGKPGEPKPRPPFPAIKGLWGKPTNINNVETWANIPVIINQGAEYFSSIGTESSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN VE M + ++I K GG+ AV GG S C+P Sbjct: 370 GTKIFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVP-NGKKFKAVQTGGPSGGCIPEEY 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +MG+ +G+ +IVMD T ++ F ESCG+C PCREG Sbjct: 429 L-DVKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++VM + +G ++ +I+LL ++ +G +CALG A P+ +K FR E I Sbjct: 488 MLKVMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIK 547 Query: 418 QYHRCN 423 + RC Sbjct: 548 E-KRCP 552 >gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] Length = 597 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N L +++ + ++R ++ + ++L +++ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGFLDPENVQEYIARDGYEALGRVLSTMKPADVVDTVKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K +D Y++ NADE +PG DR I+ +PH+++E I +AIGA Sbjct: 171 GFPTGLKWEIASKYGAD-QKYVICNADEGDPGAFMDRSILEGDPHSVVEAMAICGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E LQ A+ GLLG + G+D DI + +GAGA++CGEETA Sbjct: 230 SKGMVYIRAEYPLAVERLQKAIVAAREIGLLGKDILGTGFDFDIELRYGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++SLEG +G+P KPPFPA G +G P+ VNNVE+ A VP I+ +GA W++ G E ++ Sbjct: 290 LIQSLEGNRGEPTSKPPFPAEKGFWGKPSNVNNVETFANVPPIILKGADWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M T E+I GGIR AV GG S CL Sbjct: 350 GTKVFALAGKVNNVGLVEVPMGTTLREVIYDIGGGIR-DGKAFKAVQTGGPSGGCLTQKH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 409 L-DTPIDFDNLIAAGSMMGSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++E++ +G ++++ L E++ I+ +C LG A P+ + NF + Sbjct: 468 MHEILEKITQGKGTEKDLARLRELALVIKDTALCGLGQTAPNPVLSTLDNFGDEYLAHVR 527 Query: 418 QYHRCN 423 HRC Sbjct: 528 D-HRCP 532 >gi|156778103|gb|ABU95426.1| NADH dehydrogenase 51 kDa subunit [Sawyeria marylandensis] Length = 440 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 247/424 (58%), Positives = 311/424 (73%), Gaps = 2/424 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLY L + RG W+N + ++ KG DWII+++K SGLRGRGGAGFS Sbjct: 18 LKDSDRIFTNLYKDFDDFLDGAKKRGDWNNTENLITKGSDWIIDQLKKSGLRGRGGAGFS 77 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+K+SFMPK + +PHYLV+N DESEP TCKDR+I+RHEPH LIEG ++ +++ A A Sbjct: 78 TGLKYSFMPKKDN-KPHYLVINGDESEPQTCKDREIIRHEPHKLIEGALVCGYSLNAKAA 136 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGEF E + LQ A+DE Y SGL+G N+ GYD D+ VH GAGAY+ GEETALLE Sbjct: 137 YIYVRGEFYNEVKVLQKAIDEAYKSGLIGKNACGTGYDFDVFVHRGAGAYVSGEETALLE 196 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PR+KPPFPA GL+G PT V+NVE+++VVPTIL+RGA W+S GR NN GTK Sbjct: 197 SLEGKSGKPRIKPPFPAQAGLWGFPTMVSNVETVSVVPTILKRGADWFSSLGRPNNTGTK 256 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ ISGHV YPCTVEE MSI LIEKHCGG+RGGWDNLLAVIPGGSS +P Sbjct: 257 LYCISGHVKYPCTVEEEMSIPLKTLIEKHCGGVRGGWDNLLAVIPGGSSTAPIPKKVCDS 316 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + S GTA+++V+D+STDI+KA R + FYK ESCGQCTPCREG W+ Sbjct: 317 VLMDFDSLASVNSSFGTASILVLDKSTDIVKAFARQAHFYKEESCGQCTPCREGYAWITD 376 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ KG + +ID L + ++I GR+ICAL D A I GLI NFRP +E + + + Sbjct: 377 MLDSFQKGEGRLEDIDFLMDTCQHISGRSICALADGACQGIIGLINNFRPYLEAKCQKKN 436 Query: 421 RCNF 424 + F Sbjct: 437 KHEF 440 >gi|319789711|ref|YP_004151344.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans HB-1] gi|317114213|gb|ADU96703.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans HB-1] Length = 421 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 184/420 (43%), Positives = 254/420 (60%), Gaps = 7/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ ++ + G + + K L E D ++ EVK SGLRGRGGAGF TGMKW Sbjct: 5 LLRNVDKENSHTIEVYLKGGGYSALRKALKEMSPDDVVEEVKLSGLRGRGGAGFPTGMKW 64 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F + P + V NADE EP T KDR I+ +PH LIEG +I ++A G +IY+R Sbjct: 65 EFAAADLKE-PKFFVCNADEGEPCTFKDRVIIEKDPHALIEGMLIGAYATGCRYGYIYLR 123 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ ++ L+ A+ E Y G LG N + D+ VH GAGAYICGEETAL+ESLEGK Sbjct: 124 GEYPIGKKILERAIAEAYEKGFLGENILGTDFSFDLYVHSGAGAYICGEETALIESLEGK 183 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR+KPPFP N G PT VNNVE++A VP I+ RG WYS G + G KLF +S Sbjct: 184 RGEPRIKPPFPVNAGYLWKPTVVNNVETLANVPLIIERGGKWYSQIGSPDCPGPKLFPVS 243 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E M E+I +H GGI L AV PGG+S L A ++ MD+ Sbjct: 244 GKVKRPGVYELPMGTPLREIIFEHAGGIVKDRK-LKAVFPGGASSSLLTADEI-DVPMDF 301 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 L + G+ LG+ A++V+D + ++KA RL F++HESCG+CTPCREGT W++R+M R+ Sbjct: 302 PSLAKAGTMLGSGAIMVLDETDCVVKAALRLIEFFRHESCGKCTPCREGTDWLVRIMRRI 361 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +G+ + ++D + VS+ +E + C LG AA P+ ++ FR E I + RC F+ Sbjct: 362 EEGLGTEEDLDTILSVSETME-NSFCGLGMAAHNPVASSVRKFRDEFLEHI-KLGRCPFR 419 >gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative [Geobacter bemidjiensis Bem] Length = 636 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 169/426 (39%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLY-GLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ L + KSL D ++ G + + K L + + +I EVK + LRGRGGA Sbjct: 131 FYKNQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLQMTPEEVIGEVKGAKLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF +G KW F D Y+VVN DE +PG DR +M P T++EG +I ++AIGA Sbjct: 191 GFPSGTKWEFARNAPGD-QKYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ ++L A+ + G LG N G+D + VH GAGA+ICGEET+ Sbjct: 250 SEGYIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETS 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEGK G+P+ +PPFPA GL+G PT +NNVE+ A +P I+ +GA ++S G E+++ Sbjct: 310 LLQSLEGKPGEPKPRPPFPAVRGLWGKPTNINNVETWANIPVIINKGADYFSSIGTESSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN VE M + ++I K GG+ AV GG S C+P Sbjct: 370 GTKIFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVP-NGKKFKAVQTGGPSGGCIPEEY 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +MG+ +G+ +IVMD T ++ F ESCG+C PCREG Sbjct: 429 L-DVKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++VM + +G ++ +I+LL ++ +G +CALG A P+ +K FR E I Sbjct: 488 MLKVMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIK 547 Query: 418 QYHRCN 423 + RC Sbjct: 548 E-KRCP 552 >gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 595 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 249/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ N + + + +++ + + K L E + ++ E+K SGLRGRGG Sbjct: 110 FFRNQTRVVLRNCGQINPDDIHEYIAKDGYKALGKALKEMTPNQVVAEIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K D Y++ NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 170 GFPTGLKWELTAKSSGD-TKYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 F+YVR E+ E + A+++ GLLG N + + DI V GAGA++CGEETA Sbjct: 229 RQGFVYVRAEYAIAVERVSHAIEQARELGLLGKNLFETDFAFDIEVRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE++A +P I+ GA W++ FG E +R Sbjct: 289 LITSIEGNRGEPRPRPPFPAQKGLWGNPTLINNVETLANIPAIILNGAEWFTQFGTERSR 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T +I GGI NL AV GG S C+PA Sbjct: 349 GTKVFALAGKINNTGLIEVPMGATLRHVIYDIGGGIP-DGKNLKAVQTGGPSGGCIPA-H 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++YD L E+GS +G+ +IV+D S ++ F + ESCG+CTPCR GT Sbjct: 407 LLDTPIEYDTLLELGSMMGSGGMIVLDESDCMVDIAKFYLEFTRDESCGKCTPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ER+ +G ++ +I LL E+++ I+ ++C LG +A P+ ++ F+ + Sbjct: 467 LLEILERITEGRGKEDDIPLLQELAEGIKETSLCGLGQSAPNPVLSTLRYFKDEYMAHVR 526 Query: 418 QYHRCN 423 C Sbjct: 527 D-KVCP 531 >gi|300113270|ref|YP_003759845.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii C-113] gi|299539207|gb|ADJ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii C-113] Length = 427 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 215/425 (50%), Positives = 277/425 (65%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58 M+ F L L + ++ +IL++ II+E+K SGLRGRGGA Sbjct: 1 MIALNQVCFRTLDLDPPWGLESYLKVKGYEVWKRILKEKTPPSKIIDEIKTSGLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMPK + Y+V N+DE EPGT KDRDI+R+ PH LIEG IA + IGA Sbjct: 61 GFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYTIGA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y RGEF E + A++E Y +GLLG N G D D+ H GAGAYICGEETA Sbjct: 120 TVGYNYTRGEFSEPIERFEDALEEAYQAGLLGKNILASGVDFDLYSHPGAGAYICGEETA 179 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKG PR KPPFPA GLYG PTT+NN E++A VP IL +G W+ G + Sbjct: 180 LLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVILEKGGPWFLKLGTPTSG 239 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+SGHVN P E M I+F +L+E G + L AVIPGG+SVP +PA Sbjct: 240 GTKIFSVSGHVNRPGNYEVPMGISFKDLLELAGGM--RNGNALKAVIPGGTSVPVMPAET 297 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A MDYD L + GS LG +VI+MD +T +++A+ R+S FY+ ESCGQCTPCREGTGW Sbjct: 298 IMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYREESCGQCTPCREGTGW 357 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV+ R+ +G + ++D + V++NI+G TICALGDAAA P+ IK+FR + ID Sbjct: 358 LYRVVHRIEQGQGTQEDLDKVVNVAQNIDGHTICALGDAAAAPVISFIKHFRDEFQYHID 417 Query: 418 QYHRC 422 + RC Sbjct: 418 -HKRC 421 >gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 635 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 157/424 (37%), Positives = 236/424 (55%), Gaps = 7/424 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 Q RI N + +S+ + ++ + + K + E +I+ VKASGLRGRGG GF Sbjct: 145 KRQHRIALKNCGVIDPESIDEYLALDGYKALQKAITEMAPQDVIDVVKASGLRGRGGGGF 204 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKW F K +D Y+V NADE +PG DR I+ +P +++E IA +AIG+ Sbjct: 205 PTGMKWEFTAKAAND-KKYVVCNADEGDPGAFMDRSILEGDPQSVLEAMAIAGYAIGSDK 263 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ L+ A+ + GLLG ++ DI + GAGA++CGEETAL+ Sbjct: 264 GFIYIRAEYPMAVRRLEKAIAQAKEYGLLGQRIMGTEFNFDIEIRLGAGAFVCGEETALI 323 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++G KPPFPAN GL+G PT +NNVE+ A V I+ +GA W+ G E + GT Sbjct: 324 RSIEGERGMSVQKPPFPANSGLWGKPTLINNVETFANVAQIILKGAEWFKSVGSEKSAGT 383 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F++ G + VE M T E+I GGI AV GG S C+P + Sbjct: 384 KVFALGGKITNTGLVEIPMGTTLKEVIYDIGGGIPHN-KKFKAVQTGGPSGGCIPYTHI- 441 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + +DYD L +GS +G+ +IVMD ++ F HESCG+C+PCR GT ++ Sbjct: 442 DSPIDYDTLTTIGSMMGSGGMIVMDEDNCMVDVAKFFLEFVSHESCGKCSPCRIGTKRLL 501 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ ++ +G +++ L ++S +I+ +C LG A P+ +K F+ E + + Sbjct: 502 EILTKITEGKGTMEDLENLEKLSHDIKATALCGLGQTAPNPVLSTLKYFKHEYEAHVRE- 560 Query: 420 HRCN 423 RC Sbjct: 561 DRCP 564 >gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Synergistetes bacterium SGP1] Length = 628 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 149/414 (35%), Positives = 234/414 (56%), Gaps = 5/414 (1%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 + L++ ++RG + + K L + + + +E+ SGLRGRGGAGF TG KW + Sbjct: 152 CGKIDAVDLNEYIARGGYAALGKALHDMTPEAVCDEIDRSGLRGRGGAGFPTGKKWKSVL 211 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + + HY+V N DE +PG D IM P+ +IEG IA++A + +IYVR E+ Sbjct: 212 RQKAP-KHYVVCNGDEGDPGAFMDCSIMEGAPYRMIEGMTIAAYAARSDEGYIYVRAEYP 270 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + L+ A++ +GLLG + + ++ GAGA++CGE +AL S+EG +G P Sbjct: 271 LAVKRLRTAIERATEAGLLGDGILGTDFSFKLHINQGAGAFVCGEGSALTSSIEGNRGMP 330 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R+KPP GL+G PT +NNVE+ A VP I++ GA W+ G G E + GTK F+++G+V Sbjct: 331 RVKPPRTVEQGLFGKPTVLNNVETYANVPKIVQEGADWFRGIGTEGSPGTKAFALTGNVV 390 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 +E M T ++I GGIR AV GG S CL + +D+D L+ Sbjct: 391 NTGLIEVPMGTTLRKIIFDIGGGIR-NGKKFKAVQIGGPSGGCLCLDEHLDLPLDFDSLQ 449 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +G+ +G+ ++VMD T +++ F + ESCG+C PCREGT M+ ++ER+V G Sbjct: 450 RIGAMIGSGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEIVERIVGGQ 509 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + ++DLL E++ ++ +C LG AA P+ ++ FR E + + RC Sbjct: 510 GRPEDLDLLEELADTVKNTALCGLGKTAANPVTSTLRYFRDEYEAHVSE-KRCP 562 >gi|74317165|ref|YP_314905.1| NADH-quinone oxidoreductase subunit F [Thiobacillus denitrificans ATCC 25259] gi|74056660|gb|AAZ97100.1| NADH-quinone oxidoreductase, chain F [Thiobacillus denitrificans ATCC 25259] Length = 426 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 203/410 (49%), Positives = 264/410 (64%), Gaps = 7/410 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 SL+ ++ G + + +++ + D II E+K S LRGRGGAGF TG+KWSFMP+ Sbjct: 19 DPASLATYVANGGYQALRRVVTEAVPGDDIIAEIKTSALRGRGGAGFPTGLKWSFMPRAF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N+DE EPGT KDRDI+R+ PH LIEG IA + +GA + Y+ GE Sbjct: 79 PG-DKYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYVLGARVGYNYIHGEIFEVY 137 Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + + A++E +G LG+N + D+ HHG GAYICGEETALLES+EGKKGQPR K Sbjct: 138 QIFERALEEARQAGYLGANLFGTDFCFDLHAHHGYGAYICGEETALLESIEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E++A VP I++ G + G+ NN G KLFS+SGHVN P Sbjct: 198 PPFPASFGLYGKPTTINNTETLASVPWIVQHGGQAFLELGKPNNGGAKLFSVSGHVNRPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F EL+E G +L AVIPGGSS P LP M MD+D + + G Sbjct: 258 NYEVPLGTPFTELLEMAGG--VRDGRSLKAVIPGGSSAPVLPGHIMMETTMDFDSIAKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVIVMD + +++A+ RLS FY ESCGQCTPCREGTGWM RV+ R+ G + Sbjct: 316 SMLGSGAVIVMDETVCMVRALERLSYFYYEESCGQCTPCREGTGWMYRVIHRIENGQGRP 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++DLL V+ I G TICALGDAAA P+Q +K+F E I ++ RC Sbjct: 376 EDMDLLNSVAGQIGGHTICALGDAAAMPVQSFLKHFGHEFEHHI-EHKRC 424 >gi|319779203|ref|YP_004130116.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis MCE9] gi|317109227|gb|ADU91973.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis MCE9] Length = 452 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 215/421 (51%), Positives = 272/421 (64%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 + +I +L G L D + RG ++ + KIL G ++ II E+KASGLRGRGGAGF T Sbjct: 31 KPQILADLDGSN-WHLEDYVKRGGYEAIKKILTTGLKQEDIIAELKASGLRGRGGAGFPT 89 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ Y+V N+DE EPGT KDRDI+R PH +IEG +I FA+G + Sbjct: 90 GLKWSFMPRAFPG-QKYIVCNSDEGEPGTFKDRDILRFNPHCIIEGMIIGGFAMGVTRGY 148 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E Q A+ E A+G LGSN + D+ HHG GAYICGEETALLES Sbjct: 149 NYIHGEIFEVYERFQEAIHEARAAGYLGSNILGTDFCFDLEAHHGYGAYICGEETALLES 208 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G NN GTKL Sbjct: 209 IEGKKGQPRFKPPFPASFGLYGKPTTINNAETFAAVPWIIRNGGPAYLEVGLPNNGGTKL 268 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FSISG V P T E + F +L+E G L AVIPGGSS P LPA M Sbjct: 269 FSISGDVEKPGTYEIPLGTPFSKLLELAGGM--REGRPLKAVIPGGSSSPVLPAEIMMQT 326 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVM+ + ++K++ RLS FY+ ESCGQCTPCREGTGW+ R+ Sbjct: 327 NMDYDSISKAGSMLGSGAVIVMNDTRCMVKSLLRLSHFYQDESCGQCTPCREGTGWLYRL 386 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G + ++D L V+ NI GRTICALGDAAA P++G +K++R I+ + Sbjct: 387 VHRIEHGHGKLEDLDQLDRVAGNIMGRTICALGDAAAMPVRGFLKHYRDEFIYHIEN-KK 445 Query: 422 C 422 C Sbjct: 446 C 446 >gi|270158109|ref|ZP_06186766.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae D-4968] gi|289163626|ref|YP_003453764.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150] gi|269990134|gb|EEZ96388.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae D-4968] gi|288856799|emb|CBJ10610.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150] Length = 425 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 212/408 (51%), Positives = 271/408 (66%), Gaps = 6/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +LS S G + KIL++ II+E+K S LRGRGGAGF TG+KWSFM + Sbjct: 16 EPWTLSAYESVGGYSAWRKILKEQTSPQHIIDELKTSALRGRGGAGFPTGLKWSFMNRN- 74 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + Y+V N+DE EPGTCKDRDI+R PH LIEG IA + +GA + Y+RGEF Sbjct: 75 NPVQKYVVCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYTMGATVGYNYIRGEFWLPY 134 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E + A+ E YA+GLLG N G+D D+ H GAGAYICGEETALL SLEGKKGQPR K Sbjct: 135 EHTEMAIKEAYAAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSLEGKKGQPRFK 194 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN G K FS+SGHVN P Sbjct: 195 PPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPG 254 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F L+E G + AVIPGG+S+P LP M G MDYD +++ G Sbjct: 255 NFEIPLGTPFKMLVELAGG--VREGRKIKAVIPGGTSMPVLPGDVMMGLDMDYDSIQKAG 312 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 SGLG+ AVI+MD +T ++ A++R++ FY ESCGQCTPCREGTGWM+R++ R+ G + Sbjct: 313 SGLGSGAVIIMDETTCMVDALYRIAEFYMDESCGQCTPCREGTGWMVRLLHRIKAGHGEP 372 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ L V+ NIEGRTICALG+AAAWP+Q IK+FR E + Sbjct: 373 GDVERLVNVANNIEGRTICALGEAAAWPVQSFIKHFRDEFEYFVKNKR 420 >gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 569 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R N + S+ + ++ + + K+L E +++EVK SGLRGRGGA Sbjct: 135 FFKKQKRNALRNCGLINQTSIEEYIAMDGYKALAKVLQEMTPQQVVDEVKKSGLRGRGGA 194 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKW F+ +D Y+VVN DE +PG DR ++ +P+++IE I +A+GA Sbjct: 195 GFPTGMKWQFVLDQKAD-QKYVVVNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGA 253 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ R + A+ GLLG+N + DI + GAGA++CGEETA Sbjct: 254 SKGYAYIRLEYPRAIDHFTKALARAREVGLLGNNILGTDFSFDIEIRVGAGAFVCGEETA 313 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR +PPFPA GL+G PT +NNVE+ A + I+ +G WY+ G E ++ Sbjct: 314 LLASIEGRRGEPRPRPPFPAVSGLFGKPTLINNVETWANICPIIIKGGDWYATMGTEKSK 373 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE + IT E++E GG+ GG A GG S C+PA Sbjct: 374 GTKVFTLAGKINNTGLVEVPLGITLREIVEDIGGGVPGG-KAFKAAQTGGPSGGCIPAAY 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +I++D T ++ F + ESCG+CTPCR GT Sbjct: 433 L-DTPIDYENLAALGSIVGSGGMIIVDEGTCMVDLAKFYLGFTQDESCGKCTPCRIGTKR 491 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ KG+ ++ +I+LL E++ +I+ +C LG A PI ++ FR E + Sbjct: 492 MLEILERITKGVGKEEDIELLIELANSIKASALCGLGQTAPNPILSTLRYFRDEYEAHVK 551 Query: 418 QYHRCN 423 C Sbjct: 552 D-KTCP 556 >gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] Length = 595 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + + + + + D ++ G ++ + K+L E + +I EVK SGLRGRGG Sbjct: 111 FYKLQKRYVLKDCGKVDPEDIDDYIAHGGYEAIKKVLKEMTPEQVIEEVKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F D YL+ NADE +PG DR I+ PH +IEG +IA++AIG Sbjct: 171 GFPTGVKWGFCRASKGD-LKYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGC 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + ++ A+ G LG N ++ + + GAGA++CGEETA Sbjct: 230 REGYIYCRAEYPLAIKRVKKALRIAEERGFLGKNILGTDFEFHLHLKEGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT VNNVE+ A +P I+ GA +Y+ G E ++ Sbjct: 290 LIASIEGERGMPRSRPPFPAVRGLWGKPTNVNNVETFANLPLIILDGADFYASMGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++SG V VE M IT +LI GGI AV GG S CLP Sbjct: 350 GTKIFALSGKVKSTGLVEVPMGITVRQLIFDVGGGIPKKRK-FKAVQLGGPSGGCLPES- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L G+ +G+ V+VMD + ++ F + ESCG+C PCR GT Sbjct: 408 LLDTPIDYDSLIAAGAMMGSGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKT 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ G ++ +I+ L +++++I+ ++C LG A P+ IK FR E I Sbjct: 468 MLDILNRITSGEGREGDIENLLDLAQDIKTASLCGLGQTAPNPVITTIKYFRDEYEAHIK 527 Query: 418 QYHRCN 423 +C Sbjct: 528 N-KKCP 532 >gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 596 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + +++++ ++R ++ + K+L +I EVK SGLRGRGG Sbjct: 110 FYKKQMRIALRNCGFIDPENVNEYIARDGYEALGKVLTSMKPQDVIAEVKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + +D Y++ NADE +PG DR I+ +PH++IE I +AIGA Sbjct: 170 GFPTGLKWEIASRFSAD-QKYVICNADEGDPGAFMDRSILEGDPHSVIEAMAICGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ + LQ A+++ GLLG + G+D D+ + +GAGA++CGEETA Sbjct: 229 TKGMVYIRAEYPLAVKRLQKAIEDAREVGLLGKDILGSGFDFDVELRYGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++SLEG +G+P KPPFPA G YG P+ VNNVE+ A VP I+ +GA W++ G E ++ Sbjct: 289 LIQSLEGNRGEPVSKPPFPAERGFYGKPSNVNNVETFACVPPIILKGADWFASIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M IT E+I GGIR G AV GG S CL Sbjct: 349 GTKVFALAGKVNNVGLVEVPMGITLREVIYDIGGGIRDGRK-FKAVQTGGPSGGCLTEKH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L E GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 408 L-DTPIDFDTLLEAGSMMGSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNRR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ +G A + +++ L E++ I+ ++C LG A P+ + NF ++ Sbjct: 467 MLEMLDKICQGKATRDDLNRLRELALIIKDTSLCGLGQTAPNPVLSTLDNFFDEYLAHVE 526 Query: 418 QYHRCN 423 + RC Sbjct: 527 E-KRCP 531 >gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] Length = 596 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + ++++ G ++ + K+L + +I+E+K SGLRGRGG Sbjct: 110 FYKKQMRVALRNCGIIDPEDIEEAIAMGAYEALGKVLTTMTPEQVIDEMKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K + P Y+V NADE +PG DR IM +PH+++EG IA +AIGA Sbjct: 170 GFPTGLKWEFAYKQK-ETPKYVVCNADEGDPGAFMDRSIMEGDPHSVLEGMAIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + IYVR E+ + LQ A+ + GLLG N + D+ + GAGA++CGEETA Sbjct: 229 NHGVIYVRAEYPLAVKRLQIAIKQAREYGLLGDNIFGTDFSFDVEIRFGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G++G+PR +PP+PA GL+ PT +NNVE+ A VP I+ GA W+S G E ++ Sbjct: 289 LLNSVMGRRGEPRPRPPYPAVKGLWNKPTIINNVETFANVPVIISNGAEWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E+I GGI AV GG S C+P Sbjct: 349 GTKVFALTGKVNRTGLIEVPMGTTLREIIFDIGGGIP-DGKRFKAVQIGGPSGGCIPEEH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++DYD L +G+ +G+ ++VMD T ++ F ESCG+C PCR GT Sbjct: 408 L-DTVIDYDSLISLGAMMGSGGLVVMDEDTCMVNVAKFFLEFIVDESCGKCAPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +ID L +++ I+ +C LG A + ++ FR E I+ Sbjct: 467 MLEILDKITSGKGEPEDIDRLEKLATTIKDTALCGLGQTAPNAVLSTLRYFRNEYEAHIN 526 Query: 418 QYHRCN 423 Q +C Sbjct: 527 Q-KKCP 531 >gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] Length = 622 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 156/425 (36%), Positives = 239/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + +++ G + ++K L E + +I + S LRGRGGA Sbjct: 135 FYAKQTRLVLKNCGHIDAEHIGGALAVGAYAGIEKALFEMTPEAVIQTIYDSNLRGRGGA 194 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+ A Sbjct: 195 GFRTGRKWQQVA-SQKEKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQA 253 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+ + A GLLG N + + ++ GAGA++CGE +A Sbjct: 254 QEGYIYVRAEYPLAIERLKTAISQAEAIGLLGDNILGTNFSFHLHINRGAGAFVCGEGSA 313 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G G + Sbjct: 314 LTASIEGKRGMPRVKPPRTVEQGLWARPTVLNNVETYANVPMIVTNGADWFKGIGTPESP 373 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G+V +E M IT E+I GGI+ AV GG S CL Q Sbjct: 374 GTKAFALTGNVRNTGLIEVPMGITLREVIYDIGGGIQND-KKFKAVQIGGPSGGCLTEDQ 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + MD+D L ++G+ +G+ +++MD T +++ F + ESCG+C PCREGT Sbjct: 433 L-DSKMDFDSLAKIGAMIGSGGLVIMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKR 491 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++D L E++ IE +C LG +A P+ + F E I+ Sbjct: 492 MLEILERIVAGNGKPSDMDELRELADMIESTALCGLGKSAPKPVISTMNAFEEEYLEHIN 551 Query: 418 QYHRC 422 + RC Sbjct: 552 E-KRC 555 >gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] Length = 628 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 234/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N L +++ + ++R ++ + K L E +I+E+K SGLRGRGG Sbjct: 141 FYAKQQRIALKNCGQLDPENIREYIARDGYEALAKALHEMQPQEVIDEIKKSGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + Y++ NADE +PG DR I+ +PH ++E IA +AIGA Sbjct: 201 GFPTGVKWQFAADQPAG-DKYVICNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++Y+R E+ + LQ A+++ GL G + + DI + GAGA++CGEETA Sbjct: 260 QQGYVYIRAEYPIAVKRLQIAIEQAKELGLFGEHILGTDFSFDIEIRLGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EGK+G P KPPFPA G++G PT +NNVE+ A V I+ +G+ W+S G E ++ Sbjct: 320 LIQSIEGKRGMPVPKPPFPAVSGVWGKPTIINNVETYANVAQIILKGSGWFSAIGTEKSK 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + VE M T E+I + GG AV GG S CL Sbjct: 380 GTKVFALGGKIVNTGLVEIPMGTTLREVIYEIGGGCP-NGKKFKAVQTGGPSGGCLTVED 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +GS +G+ +IV+D ++ F ESCG+CTPCR GT Sbjct: 439 L-DTPIDFDNLIALGSMMGSGGMIVLDEDNCMVDVARFYMEFIVDESCGKCTPCRVGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ + +G +D L + K I+ +C LG AA P+ ++ FR E + Sbjct: 498 MLELLTDICEGRGTMETLDELETLGKMIKDTALCGLGQTAANPVLSTLRLFRDEYEAHVK 557 Query: 418 QYHRCN 423 + RC Sbjct: 558 E-KRCP 562 >gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 582 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 158/425 (37%), Positives = 240/425 (56%), Gaps = 7/425 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 L Q RI N + +++ + + ++ + K + E +I E+K S +RGRGGAG Sbjct: 97 LRKQKRIALKNCGLIDPQNIHHYIDQNGYEAIKKCIGEMTPAEVIEEIKVSNIRGRGGAG 156 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW+ + ++ P Y+V NADE +PG DR I+ +PH +IEG +IA++AIGA Sbjct: 157 FPTWFKWNAAMQS-NEYPKYIVCNADEGDPGAFMDRSILEGDPHAIIEGMMIAAYAIGAQ 215 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +YVR E+ E LQ A+ + LLG + + DI V GAGA++CGEETAL Sbjct: 216 YGVVYVRAEYPLAIERLQKAILQAKELNLLGDHIFNSQFQFDIKVKAGAGAFVCGEETAL 275 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + SLEG++G PRLKPPFPA GL+ PT +NNVE+ A +P I+ +G ++ G N++G Sbjct: 276 IASLEGERGMPRLKPPFPAEKGLWQKPTNINNVETFANIPWIINQGGKAFADIGVNNSQG 335 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G + VE M + E+I GGI D A+ GG S C+P + Sbjct: 336 TKVFALTGKIRDGGLVEVPMGTSLQEIIFDIGGGILNDRD-FKALQLGGPSGGCVP-NAL 393 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I+DY+ + + G+ +G+ ++VMD +T ++ F ESCG+C CR GT M Sbjct: 394 LDTIVDYESVTKTGAIMGSGGMVVMDDTTCMVDMAKFFLDFTCKESCGKCIHCRLGTKRM 453 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ R+ +G Q +I+LL E+ I+ ++C LG A P+ IK FR E+ I Sbjct: 454 LEILTRITEGHGQTGDIELLEELGSGIKEGSLCGLGQTAPNPVLSTIKYFREEYEKHIID 513 Query: 419 YHRCN 423 C Sbjct: 514 -KTCP 517 >gi|52842982|ref|YP_096781.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630093|gb|AAU28834.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 428 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 211/408 (51%), Positives = 271/408 (66%), Gaps = 6/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + SLS S G + KIL++ II E+K S LRGRGGAGF TG+KWSFM + Sbjct: 19 ESWSLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNRN- 77 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 S Y+V N+DE EPGTCKDR+I+ PH LIEG IA + +GA + Y+RGEF Sbjct: 78 SPVQKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPF 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E +AA+ E Y +GLLG N G+D D+ H GAGAYICGEETALL S+EGKKG PR K Sbjct: 138 ERTEAAIKEAYDAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN G K FS+SGHVN P Sbjct: 198 PPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F L++ G I+G + AVIPGGSS+P LP M G MDYD +++ G Sbjct: 258 NYEIPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 SGLG+ AVI+MD +T ++ A++R+S FY ESCGQCTPCREGTGW++R++ R++ G + Sbjct: 316 SGLGSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEP 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ L V+ NIEGRTICALG+AAAWP+Q +K+F E I Sbjct: 376 GDVEKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKHKR 423 >gi|282899670|ref|ZP_06307634.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281195549|gb|EFA70482.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 533 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 146/421 (34%), Positives = 241/421 (57%), Gaps = 6/421 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q + N + + + ++ + + ++L E ++ + SGLRGRGGA Sbjct: 116 FFTKQLPIVLENSGRVDPERIQSYIAANGYQALYQVLREMKPAEVVEVITKSGLRGRGGA 175 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW + K +++ NADE +PG DR ++ +PH ++EG IA+++IGA Sbjct: 176 GYPTGLKWGTVAKSP-GAKKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYSIGA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + L+ A+ + G+LG+N + +D I + GAGAY+CGEETA Sbjct: 235 NQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKIEIRIGAGAYVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+R GA W++ G E ++ Sbjct: 295 LMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRNGAEWFANIGTEKSK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M T E++E+ GGI G AV GG S C+PA Sbjct: 355 GTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDGG-MAKAVQTGGPSGGCIPASA 413 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L +GS +G+ +IVMD++T+++ F ESCG+C PCR GT Sbjct: 414 -FTTPVDYESLSALGSMMGSGGMIVMDQTTNMVDVARFFMEFCMDESCGKCIPCRVGTVQ 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ R+ +G + ++ LL E+ ++ ++C LG +A P+ ++ F+ I Sbjct: 473 LHDLLTRISQGKGTQNDLHLLEELCDMVKHTSLCGLGQSAPNPVFSTLRYFKEEYLALIK 532 Query: 418 Q 418 Q Sbjct: 533 Q 533 >gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] Length = 631 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KWSF SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SKGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ +GA WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINKGADWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GGI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F E ++ Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|257095314|ref|YP_003168955.1| NADH-quinone oxidoreductase subunit F [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047838|gb|ACV37026.1| NADH-quinone oxidoreductase, F subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 442 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 211/414 (50%), Positives = 275/414 (66%), Gaps = 7/414 (1%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 L G L+D + RG + + +ILE+ ++++INEVK S LRGRGGAGF TG+KWSFM Sbjct: 15 LDGDNAWRLADYVKRGGYTALRRILEEKLPQEYVINEVKKSVLRGRGGAGFPTGLKWSFM 74 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 P+ Y+V N+DE EPGT KDRDI+R++PH++IEG IA FA+GA + Y+ GE Sbjct: 75 PRSFPG-DKYVVCNSDEGEPGTFKDRDILRYDPHSVIEGMAIAGFAMGAGRGYNYIHGEV 133 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 E + A+DE A+GLLG + G++ D+ HHG GAYICGEETALLES+EGKKGQ Sbjct: 134 WEIYERFEEALDEARAAGLLGKDILGSGFNFDLFAHHGYGAYICGEETALLESIEGKKGQ 193 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFPA+ GLYG PTT+NN E+ A +P I+ G Y G+ NN GTKLFS+SGHV Sbjct: 194 PRFKPPFPASFGLYGKPTTINNTETFASIPYIINLGGEHYLEAGKANNGGTKLFSVSGHV 253 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 N P E + F L++ G G L IPGGSS P +PA M MDYD + Sbjct: 254 NRPGNYEIPLGTPFATLLDMAGGM--RGGRQLKGCIPGGSSSPVVPAATMMDCTMDYDSI 311 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + GS LG+ AVIVMD +T ++KA+ RLS FY ESCGQCTPCREGT W+ +++ R+ G Sbjct: 312 SKAGSMLGSGAVIVMDETTCMVKALERLSFFYYEESCGQCTPCREGTNWLYKIVHRIEHG 371 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + ++DLL V+ NI GRTICALGDAA+ P+Q IK++R I ++ +C Sbjct: 372 QGRADDLDLLASVTTNIMGRTICALGDAASMPVQSFIKHYRDEFAYHI-EHKKC 424 >gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725] gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis 2002] gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725] gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis 2002] Length = 598 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +I+ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+++ GLLG N G++ DI + GAGA++CGEETA Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTGFEFDIEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN +E M T E++E G G AV GG S C+PA Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G+ +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +++ L E++ +I+ +C LG A P+ ++ FR E + Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|332285012|ref|YP_004416923.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas sp. T7-7] gi|330428965|gb|AEC20299.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas sp. T7-7] Length = 455 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 211/414 (50%), Positives = 261/414 (63%), Gaps = 9/414 (2%) Query: 14 GLQG--KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 GL G L D + RG ++ + KIL D +I EVKAS LRGRGGAGF TG+KWSFM Sbjct: 40 GLDGANWGLEDYVKRGGYEALRKILTTGMTPDDVIAEVKASSLRGRGGAGFPTGLKWSFM 99 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 P+ YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ GE Sbjct: 100 PRTLPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGITVGYNYIHGEI 158 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 E + A+++ A+G LG + + HG GAYICGEETALLESLEGKKGQ Sbjct: 159 FEIYERFEEALEQARAAGFLGDKILGSEFSFQLHAFHGYGAYICGEETALLESLEGKKGQ 218 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFPA+ GLYG PTT+NN E+ A VP I R A Y G N GTKLFSISG V Sbjct: 219 PRFKPPFPASFGLYGKPTTINNTETFAAVPWIFRHSAQEYLDIGVANAGGTKLFSISGDV 278 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + F +L+E G G L AVIPGGSS P LPA M MDYD + Sbjct: 279 ELPGNYEIPLGTPFSKLLELAGGM--RGGRKLKAVIPGGSSAPVLPAEIMMQTNMDYDSI 336 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G Sbjct: 337 AKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMLARIENG 396 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + ++D+L V+ NI GRTICALGDAAA P++ IK+FR I ++ C Sbjct: 397 QGRPEDLDVLDSVAHNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449 >gi|54295613|ref|YP_128028.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens] gi|54298767|ref|YP_125136.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris] gi|148361097|ref|YP_001252304.1| NADH dehydrogenase I subunit F [Legionella pneumophila str. Corby] gi|296108427|ref|YP_003620128.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy] gi|53752552|emb|CAH13984.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris] gi|53755445|emb|CAH16941.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens] gi|148282870|gb|ABQ56958.1| NADH dehydrogenase I, F subunit [Legionella pneumophila str. Corby] gi|295650329|gb|ADG26176.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy] gi|307611653|emb|CBX01344.1| NADH dehydrogenase I chain F [Legionella pneumophila 130b] Length = 425 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 211/408 (51%), Positives = 270/408 (66%), Gaps = 6/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + SLS S G + KIL++ II E+K S LRGRGGAGF TG+KWSFM + Sbjct: 16 EPWSLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNRN- 74 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 S Y+V N+DE EPGTCKDR+I+ PH LIEG IA + +GA + Y+RGEF Sbjct: 75 SPVQKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPF 134 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E +AA+ E Y +GLLG N G D D+ H GAGAYICGEETALL S+EGKKG PR K Sbjct: 135 ERTEAAIKEAYDAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFK 194 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN G K FS+SGHVN P Sbjct: 195 PPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPG 254 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F L++ G I+G + AVIPGGSS+P LP M G MDYD +++ G Sbjct: 255 NYEIPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAG 312 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 SGLG+ AVI+MD +T ++ A++R+S FY ESCGQCTPCREGTGW++R++ R++ G + Sbjct: 313 SGLGSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEP 372 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ L V+ NIEGRTICALG+AAAWP+Q +K+F E I Sbjct: 373 GDVEKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKHKR 420 >gi|119897692|ref|YP_932905.1| putative NADH-ubiquinone oxidoreductase subunit F [Azoarcus sp. BH72] gi|119670105|emb|CAL94018.1| putative NADH-ubiquinone oxidoreductase chain F [Azoarcus sp. BH72] Length = 439 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 216/418 (51%), Positives = 273/418 (65%), Gaps = 7/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G + L D + RG + + KI+ + + II E+KAS LRGRGGAGF TG+K Sbjct: 7 ILAGLDGDRTWRLQDYIGRGGYSALKKIIAEKIPPETIIAELKASALRGRGGAGFPTGLK 66 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YL N+DE EPGT KDRDI+R+ PHT+IEG VIA++A+GA + Y+ Sbjct: 67 WSFMPRSFPG-DKYLACNSDEGEPGTFKDRDILRYNPHTVIEGMVIAAYAMGATRGYNYI 125 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A+DE +GL+G N + ++ HHG GAYICGEETALLES+EG Sbjct: 126 HGEVFELYQRFEEALDEARQAGLVGQNILGSEFSFELFAHHGYGAYICGEETALLESIEG 185 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G + G+ NN GTKLFSI Sbjct: 186 KKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIINLGGEGFLNLGKPNNGGTKLFSI 245 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHVN P E ++ F EL+E G G L AVIPGGSS P LP M MD Sbjct: 246 SGHVNRPGVYEINLGTPFSELLEMAGGM--RGGRKLKAVIPGGSSAPVLPGDIMMDCTMD 303 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + ++KA+ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 304 YDSISKAGSMLGSGAVIVMDETVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRVVHR 363 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G+ + ++DLL V+ NI GRTICALGDAA+ P+Q IK+F E I+ +C Sbjct: 364 IENGLGRPDDLDLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGAEFEYHIEN-KKC 420 >gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] Length = 623 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 236/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + ++ G + + K L E + +I+EV SGLRGRGGA Sbjct: 136 FLKLQTRIVLENCGNIDAESIDEYIAIGGFSALSKALFEMTPETVIDEVDKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + ++ Y+V N DE +PG D +M +P+ +IEG IA++A+GA Sbjct: 196 GFPAGKKWKQVAGQP-EKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG + + + ++ GAGA++CGE +A Sbjct: 255 QEGYIYVRAEYPLSVARLKKAMRQAEEYGLLGDHILGTDFSFHLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G E + Sbjct: 315 LTASIEGNRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILEGADWFRTIGTEKSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M T +I GG++ G V GG S CL Sbjct: 375 GTKTFSLTGSIETTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLTEEH 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D +K+ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 434 L-DQPLDFDAVKKFDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V+G + +++D L E+++ + +C LG +A P+ +K FR EE I Sbjct: 493 MLEILERIVEGKGELKDLDQLEELAEMVRSMALCGLGKSAPLPVISTLKRFREEYEEHII 552 Query: 418 QYHRC 422 +C Sbjct: 553 N-KKC 556 >gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402 065] Length = 631 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KWSF SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ RGA WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINRGADWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GGI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F E +D Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVD 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 590 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ D + + + K+L + +I E++ S LRGRGGA Sbjct: 99 FLQQQLRIVLRNCGRIDPESIDDYRRQDGYSALQKVLAKMSPEEVIEEIEVSALRGRGGA 158 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + Y++ NADE +PG DR I+ +PH ++EG +IA++AIGA Sbjct: 159 GFLTGLKWKAT-REAGGLYRYIICNADEGDPGAFMDRSILEGDPHAVLEGMIIAAYAIGA 217 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY R E+ + L+ A+ + GLLG + DI + GAGA++CGEETA Sbjct: 218 EQGIIYCRAEYPLAVKRLEIAIAQARQKGLLGQRILGSDFSFDISIQQGAGAFVCGEETA 277 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPP+P+ GL+G P+++NNVE++A VP I+R G ++ G ++ Sbjct: 278 LIASLEGERGMPRLKPPYPSESGLWGYPSSINNVETLANVPWIIRNGGEAFAALGSRESK 337 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M T E+I GG++ G + AV GG S C+PA Sbjct: 338 GTKVFALAGKIERGGLVEVPMGTTLREIIYGIGGGVKTG-RRIKAVQMGGPSGGCIPAE- 395 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY L G+ +G+ ++V+D S+ ++ F + ESCG+C CR GT Sbjct: 396 LLDIPVDYQSLSNTGAIMGSGGMVVLDESSCMVDLARFFLDFTQKESCGKCVQCRIGTKR 455 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G Q+ +I+LL E+S +I ++C LG +A P+ I+ FR E I Sbjct: 456 MLEILERICQGEGQEGDIELLEELSAHISENSLCGLGQSAPNPVLTTIRYFRDEYEAHIR 515 Query: 418 QYHRCN 423 + +C Sbjct: 516 E-KKCP 520 >gi|226470474|emb|CAX70517.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 432 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 252/390 (64%), Positives = 305/390 (78%), Gaps = 1/390 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D+DRIFTNLYG L +M RGHW +I+ KG DWII E+K SGLRGRGGAGF Sbjct: 41 LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA A+GA+ A Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGAYICGEETAL+E Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ FGRE NRGTK Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS P LP Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCTPCREG WM + Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 +M R VKG A K EID+++E+SK +EGRTI Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTI 430 >gi|297565709|ref|YP_003684681.1| NADH-quinone oxidoreductase subunit F [Meiothermus silvanus DSM 9946] gi|296850158|gb|ADH63173.1| NADH-quinone oxidoreductase, F subunit [Meiothermus silvanus DSM 9946] Length = 444 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 196/414 (47%), Positives = 265/414 (64%), Gaps = 7/414 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 ++ ++ +L +S G ++ V K L + ++ EVK SGLRGRGGAGF TG+KWS Sbjct: 23 LYKHVGIKDSWTLEYYLSHGGYNAVKKALAMTPEQVVEEVKRSGLRGRGGAGFPTGLKWS 82 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMPK S + HY+V NADESEPG+ KDR +M +PH LIEG +IA +AI A +IY+RG Sbjct: 83 FMPK-PSGKQHYIVCNADESEPGSFKDRYLMEDDPHQLIEGMIIAGYAIHATKGYIYIRG 141 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R + L+ A+ E YA G LG N G+ D+ VH GAGAYICGEETAL+ SLEG + Sbjct: 142 EYRRAYDRLKGAIQEAYARGYLGQNLFGTGFSFDLYVHRGAGAYICGEETALMNSLEGLR 201 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 PRLKPPFPA GL+G PTT+NNVES+ I+ RGA W++ G E ++G KL+ +SG Sbjct: 202 ANPRLKPPFPAQAGLWGKPTTINNVESLCSAVHIIDRGADWFASMGTEKSKGHKLYQVSG 261 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDY 305 P E M TF EL+ GG + + A+IPGGSS P LP MDY Sbjct: 262 PFKRPGVYELPMGTTFRELLMDWAGGPT---EPIQAIIPGGSSCPPLPWNDDTLDTPMDY 318 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMER 364 + L GS LGT VI + S ++ A+W ++ FY HESCG+CTPCREG GWM+ + E+ Sbjct: 319 ESLAAKGSLLGTGGVIGIPASMSMVDAMWNVTRFYGHESCGKCTPCREGVSGWMVGLFEK 378 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +G + +++LL ++ IEGR+ CAL DAA WP++G +K+FR E ++Q Sbjct: 379 IGRGQGKPGDVELLEDLLDQIEGRSFCALADAACWPVRGSLKHFRHQYVELVEQ 432 >gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. 230613] Length = 631 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KWSF SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ +GA WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINKGADWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GGI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F E ++ Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|149927546|ref|ZP_01915800.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter sp. MED105] gi|149823819|gb|EDM83045.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter sp. MED105] Length = 420 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 201/413 (48%), Positives = 265/413 (64%), Gaps = 8/413 (1%) Query: 12 LYGLQG--KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67 L GL G L +RG + + KIL +G ++ +I EVK S LRGRGGAGF TG+KWS Sbjct: 3 LAGLDGSNWDLKGYEARGGYKALRKILTEGISQEDVIAEVKKSALRGRGGAGFPTGLKWS 62 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ YL N+DE EPGT KDRDI+R+ PH++IEG IA++A+G + Y+ G Sbjct: 63 FMPRQFPG-QKYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGISVGYNYIHG 121 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E E + A+++ A+G LG N + + H G GAYICGEETAL+ES+EGKK Sbjct: 122 EIWETYERFEEALEQARAAGYLGDNIMGSKFSFQLHAHQGYGAYICGEETALIESIEGKK 181 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPR KPPFPA+ G+YG PTT+NN E+ A VP I++ G W+ G+ NN GTK+FSISG Sbjct: 182 GQPRFKPPFPASYGIYGKPTTINNTETFAAVPFIIQNGGDWFLELGKPNNGGTKIFSISG 241 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E + F L+E G G + AVIPGGSS+P LP M MDYD Sbjct: 242 DVEKPGNYEIPLGTPFATLLEMAGGM--KGGRKIKAVIPGGSSMPVLPGDVMMATDMDYD 299 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ Sbjct: 300 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRIINRIE 359 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 G + ++D+L ++ NI+GRTICALGDAAA P++ +K+F E I Sbjct: 360 HGEGRPEDLDMLNSIADNIQGRTICALGDAAAMPVRAFLKHFHEEFEHHITHK 412 >gi|239616592|ref|YP_002939914.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] gi|239505423|gb|ACR78910.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] Length = 539 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 165/417 (39%), Positives = 250/417 (59%), Gaps = 5/417 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +T ++RI G + K++ + ++ + + K L+ + +I EVK SGLRGRGGAGF Sbjct: 106 ITKEERIVLKRAGEINPKNIDEYIAFDGYQGLAKALQMSPEDVIKEVKESGLRGRGGAGF 165 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F KV + + Y++ NADE EPGT KDR IM +PH++IEG I ++A+GA+ Sbjct: 166 PAGLKWEFTYKVDA-KEKYVICNADEGEPGTFKDRLIMEGDPHSVIEGMAITAYAVGANK 224 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ +L+ A+ + Y GLLG N + D+ V GAGAY+CGEETAL+ Sbjct: 225 GYIYIRGEYFESVNNLRIAISQAYDYGLLGENILGTNFSFDLSVRLGAGAYVCGEETALI 284 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG G+PRLKPP+P GLY PT VNNVE+ A VP I+ GA W+ G E++ GT Sbjct: 285 ESIEGHAGRPRLKPPYPPVKGLYQKPTVVNNVETFANVPWIVLNGAEWFRSIGTESSPGT 344 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K++S+ G++ E M T ELI KH GGI NL V GG++ + ++ Sbjct: 345 KVYSLCGNLVRRGITEVPMGTTVAELIYKHGGGIA-NGRNLKMVQTGGAAGTFIKPDEI- 402 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D++ ++ G LG+ ++ +D + + L F+ HESCG+C+PCREGT ++ Sbjct: 403 NTPLDFNSFRDYGVALGSGVILAVDDTHCAVDVALNLMEFFAHESCGKCSPCREGTKLIV 462 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ + KG K I LY++++ ++ C LG + P++ L+ FR IE I Sbjct: 463 NILKEISKGRGTKEMIGQLYDIAETMQNSAFCGLGQSVPVPLRSLLDRFRDEIEAHI 519 >gi|319943353|ref|ZP_08017635.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC 51599] gi|319743168|gb|EFV95573.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC 51599] Length = 449 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 203/423 (47%), Positives = 265/423 (62%), Gaps = 12/423 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-------KGRDWIINEVKASGLRGRGGAGF 60 IF L G +L +RG + + ++L + +I EVKASGLRGRGGAGF Sbjct: 25 IFAGLTSADGWTLEQYEARGGYQALKRVLLGADGKQPMTPEEVIAEVKASGLRGRGGAGF 84 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ YLV N+DE EPGT KDRDI+R+ PH +IEG IA++A+G Sbjct: 85 PTGLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRYNPHIVIEGMTIAAYAMGISA 143 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 + Y+ GE R E + A+ + A+G LG + ++ HHG GAYICGEETALL Sbjct: 144 GYNYIHGEIFRIYERFEEALAQARAAGYLGDRILGTDFSFNLNAHHGFGAYICGEETALL 203 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP I+R G + G+ NN GT Sbjct: 204 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSAVPWIIRNGGQAFLEAGKPNNGGT 263 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+ G V P E + F +L+E G L VIPGGSS P +P M Sbjct: 264 KIFSVGGDVERPGNYEVPLGTPFAKLLELAGG--VRYGRKLKMVIPGGSSAPVIPGHMMM 321 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDYD + + GS LG+ AVIVMD + ++++ RLS FY HESCGQCTPCREGTGW+ Sbjct: 322 DLTMDYDAIAKAGSMLGSGAVIVMDETRCPVRSLERLSYFYSHESCGQCTPCREGTGWLY 381 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R++ R+ G + +ID L V+ NI+GRTICALGDAAA P++G IK++R + ++ Sbjct: 382 RLVHRIEHGQGRPEDIDELDRVAGNIQGRTICALGDAAAMPVRGFIKHYRDEFVHHV-EH 440 Query: 420 HRC 422 C Sbjct: 441 KTC 443 >gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] Length = 628 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++RG + ++K L E +I VKASGLRGRGG Sbjct: 142 FYAKQMRIALRNCGAIDPENIDEYIARGGYLAIEKCLSEMTPAQVIETVKASGLRGRGGG 201 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + +D Y+ NADE +PG DR I+ +PH +IE IA +AIGA Sbjct: 202 GFPTGIKWGLAAQNKAD-QKYVCCNADEGDPGAFMDRSILEGDPHAVIEAMSIAGYAIGA 260 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ L+ A+++ GLLG N G+ D+ + GAGA++CGEETA Sbjct: 261 TQGYVYVRAEYPIAVHRLRVAIEQAREYGLLGDNVLGTGFKFDMDIRLGAGAFVCGEETA 320 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR +PP+PA GL+ PT +NNVE+ A +P I+ +GA W++ G + + Sbjct: 321 LMTSIEGKRGEPRPRPPYPAVKGLFEKPTILNNVETYANIPQIILKGADWFNSIGTKGST 380 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N+ VE M T ++E+ GGI G A GG S C+PA Sbjct: 381 GTKVFALGGKINHTGLVEVPMGTTLRTIVEEIGGGIPSGRP-FKAAQMGGPSGGCVPAEY 439 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L E+G+ +G+ +IVMD +T ++ F ESCG+CTPCR GT Sbjct: 440 L-DVPIDYDSLIEIGAMMGSGGLIVMDDTTCMVDIAKFFLEFTVDESCGKCTPCRIGTKR 498 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ +++R+ +G ++ + ++S++I+ +CALG A P+ +K FR + Sbjct: 499 LLELLDRISRGEGTMESLEEIEDLSQHIKNSALCALGQTAPNPVLSTLKFFRNEYVAHVK 558 Query: 418 QYHRCN 423 +C Sbjct: 559 D-RKCP 563 >gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 623 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 158/425 (37%), Positives = 240/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + +S S+ +++G + + K+L E + + S LRGRGG Sbjct: 137 FYRKQTRMVLKNCGSINAESFSEYVAKGGYKALGKVLFEMQPQEVCQSILDSNLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ +G KW + K S+ Y+V N DE +PG DR IM +PH +IEG IA +A + Sbjct: 197 GYPSGAKWKQVLKQDSE-VKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKS 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+++ G+LG N G+ DI ++ GAGA++CGE +A Sbjct: 256 TIGYIYVRAEYPLAVERLKIAIEDARKHGMLGENILSSGFSFDININMGAGAFVCGEGSA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG++G PR+KPP GL+ PT +NNVE+ A VP I+ G+ WY G EN+ Sbjct: 316 LTASIEGERGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPLIINNGSEWYKSIGPENSP 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+I+G+VN+ +E M T E+I GGI+ AV GG S CL Sbjct: 376 GTKAFAITGNVNHTGLIEVPMGTTLREVIFDIGGGIK-NGKKFKAVQIGGPSGGCLTEEH 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK +G+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 435 L-DLPLDFDSLKRVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKR 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++V G K ++DLL E++ I +C LG +AA P+ +K FR E + Sbjct: 494 MLEILEKIVNGKGSKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVV 553 Query: 418 QYHRC 422 +C Sbjct: 554 D-KKC 557 >gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] Length = 599 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 153/417 (36%), Positives = 232/417 (55%), Gaps = 5/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N+ + ++ D ++RG + + K L D II EV+ASG+RGRGGAGF TG KW Sbjct: 117 VLHNIGEIDPTNIDDYIARGGYSALKKALSMDADRIIGEVEASGIRGRGGAGFPTGTKWR 176 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 K SD Y+ N DE +PG DR I+ +PH++IEG +I + AI A ++Y+R Sbjct: 177 QALKYDSD-VKYVACNGDEGDPGAFMDRSILEGDPHSVIEGMIICACAIDAQEGYMYIRD 235 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E+ + A+ + G LG + G DI + G GA++CGE TAL+ S+EG+ Sbjct: 236 EYGLAVENCKIALQQAREKGFLGDSVMGTGKSFDIQIVRGGGAFVCGESTALMASVEGRV 295 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR K GL+ PT +NNVE++A +P I++ G + + G E + GTK+F++ G Sbjct: 296 GEPRAKYIRSVQRGLWNKPTVLNNVETLANIPRIIQDGGAKFKELGTEKSSGTKVFALVG 355 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V VE M T LI GGI G AV GG S C+PA + MD+D Sbjct: 356 KVKRTGLVEIPMGSTLRHLIYDIGGGIPGDRP-FKAVQTGGPSGGCIPAE-LLDLPMDFD 413 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L G+ +G+ VIVMD + +++ F ESCG+CTPCREG ++ ++ + Sbjct: 414 TLTSYGAMMGSGGVIVMDDRSCMVEVARYYIEFLCDESCGKCTPCREGLRHLLTILTDIC 473 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +G Q+ +I+L+ ++ ++ ++C+LG +AA P+ IK FR E I + RC Sbjct: 474 EGRGQEGDIELMEKICHTMQDASLCSLGKSAANPVLTTIKYFRDEYEAHIHE-KRCP 529 >gi|217968066|ref|YP_002353572.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217337165|gb|ACK42958.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 545 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 168/427 (39%), Positives = 244/427 (57%), Gaps = 10/427 (2%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 Q RI N + +S+ + ++ G ++ + K L E + +I E+K SGLRGRGGAGF Sbjct: 112 RRQVRIVLRNSGVINPESIEEYIANGGFEGLSKALSEMTPEDVIKEIKESGLRGRGGAGF 171 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F K+ SD Y+V NADE EPGT KDR I+ +P ++E IA +A+GA Sbjct: 172 PAGLKWEFTYKIPSD-EKYVVCNADEGEPGTFKDRLILEGDPFRIVEAMTIAGYAVGAKK 230 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ E +Q A++ GLLG N + DI V GAGAYICGEETAL+ Sbjct: 231 GYIYIRGEYKLSIERMQKAINTAREYGLLGENILGTNFSFDIEVRKGAGAYICGEETALI 290 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPP+P + GL PT VNNVE++A VP I+R GA W+ FG E GT Sbjct: 291 ESLEGKRGIPRIKPPYPVSQGLRNKPTVVNNVETLANVPDIIRNGAKWFRQFGTEKCPGT 350 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+++I G V +E M ++I ++ GGI+ G + GG++ L M Sbjct: 351 KVYTILGDVVNAGLIEVEMGTPLRDIIFQYGGGIKNGGK-FKCALVGGAAGAFLGEE-ML 408 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD++ LKE + LG+ A++VM I+ + + F+KHESCG+CTPCR GT ++ Sbjct: 409 DVKMDFENLKEYKAVLGSGAILVMSDGACIVDMLKSILRFFKHESCGRCTPCRVGTKRLV 468 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ER + ++D + +S ++ + C LG + P+ +K FR Sbjct: 469 EIIERFASLEGTEEDLDEMVNISLVMKDTSFCPLGQSVYLPVSSAVKYFREEFVSHFKDK 528 Query: 420 H----RC 422 + RC Sbjct: 529 YCVSGRC 535 >gi|116624103|ref|YP_826259.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus Ellin6076] gi|116227265|gb|ABJ85974.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus Ellin6076] Length = 548 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 154/419 (36%), Positives = 243/419 (57%), Gaps = 6/419 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I N + + + D ++ + + + E +I +VK+S LRGRGGA Sbjct: 116 FFARQKKIVLENSGVIDPERIEDYIAHHGYAALVTAITEMSPQEVIEQVKSSSLRGRGGA 175 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K ++ Y++ NADE +PG DR ++ +PH ++EG IA+FA+GA Sbjct: 176 GYPTGLKWSTVAKT-GEQQKYVICNADEGDPGAFMDRAVLESDPHRVLEGMAIAAFAVGA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ + L+ A+ + GLLG++ + I + GAGA++CGEETA Sbjct: 235 QKGFIYVRAEYPLAVKHLKGAIRQAERLGLLGNSICGTRFSFHIDIRLGAGAFVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFPA GL+ CPT +NNVE+ A + ILR GA+W++ G E ++ Sbjct: 295 LIASIEGKRGTPRPRPPFPAESGLWECPTLINNVETFANIAPILRNGAAWFAAIGTERSK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V +E M IT E+I + GG+ AV GG S C+P Q Sbjct: 355 GTKVFALAGRVANTGLIEVPMGITLREIIHEIGGGVP-DGKRYKAVQTGGPSGGCIP-EQ 412 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD+++ ++ F ESCG+C PCR GT Sbjct: 413 HLDSPVDYESLARIGSIMGSGGMIVMDQTSCMVDVAKYFMEFCMSESCGKCIPCRAGTQQ 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M ++E++ G A +++ LL E+ + ++C LG +A P+ +K FR + + Sbjct: 473 MHAILEKITAGEATAQDVALLEELCDLVRSTSLCGLGQSAPNPVVTTLKYFRGEYDAHL 531 >gi|302337010|ref|YP_003802216.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Spirochaeta smaragdinae DSM 11293] gi|301634195|gb|ADK79622.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Spirochaeta smaragdinae DSM 11293] Length = 1040 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 161/415 (38%), Positives = 246/415 (59%), Gaps = 5/415 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + + + S+ D+++ G + + K+L E+ D +I+ +K SGLRGRGGAGF T +KW Sbjct: 142 VLSRCGVVDPDSIEDAIACGAYTALAKVLNEEDADKVIDTLKISGLRGRGGAGFPTWLKW 201 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F K + Y++ NADE +PG DR ++ +PH LIEG IA IGA +YVR Sbjct: 202 DFTRKSPGE-EKYVLCNADEGDPGAFMDRSVLEGDPHALIEGMAIAGKTIGADHGVVYVR 260 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L A++ SGLLG N ++ DI + G+GA++CGEETAL+ S+EGK Sbjct: 261 AEYPLAVKRLGHAIEAAKESGLLGENILGSEFNFDIEIRMGSGAFVCGEETALIASIEGK 320 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR +PPFPAN GL+G P+ +NNVE+ A + I+++GA WY+ FG ++GTK+F+++ Sbjct: 321 RGEPRPRPPFPANKGLWGKPSLLNNVETYANIAGIIKKGAEWYASFGTTESKGTKVFALA 380 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G ++ VE + E++ GGI GG + A GG S C+P + +DY Sbjct: 381 GAISTSGLVEVPIGTCLGEVVFDIGGGIPGGKE-FKAAQIGGPSGGCIPREYL-NVPLDY 438 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 L+E+G+ +G+ +IVMD T ++ F + ESCG+CTPCR GT M+ ++ER+ Sbjct: 439 ASLQELGAIMGSGGLIVMDDDTCMVDVARYFLEFVQEESCGKCTPCRVGTKRMLEILERI 498 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G + +ID L E+ I+ +C LG A P+ I++FR EE I +H Sbjct: 499 CNGKGEMEDIDRLIELGTKIKETALCGLGQTAPNPVLSTIRHFRHEYEEHIRDHH 553 >gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 626 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 149/423 (35%), Positives = 241/423 (56%), Gaps = 6/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 Q + + + +++ ++ G + + +L + +I E+K SGLRGRGGAGF Sbjct: 143 KQQRVVLERCGYINPEDIAEYIAAGGYRALTSVLFSLSPEEVIEEIKKSGLRGRGGAGFP 202 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW +V S Y++ NADE +PG DR ++ +PH +IEG +I +AIG+ Sbjct: 203 TGKKWEAARRVPS-SKRYVICNADEGDPGAFMDRALLEGDPHAVIEGMIICGYAIGSDEG 261 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVR E+ + L+ A+++ YA+GLLG N G+ + ++ GAGA++CGE TAL+ Sbjct: 262 YVYVRAEYPLAVKRLRIAIEQAYAAGLLGENILGSGFSFHLHINEGAGAFVCGESTALMA 321 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G PR+K P GL+G PT +NNVE+ A VP I+ RG+ W++ G + ++GTK Sbjct: 322 SIEGNRGIPRIKVPRSTEKGLFGKPTVLNNVETFANVPLIILRGSQWFANIGTKGSKGTK 381 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F++SG V + VE M T ELI G G A+ GG S C+P M Sbjct: 382 IFALSGKVKHTGLVEVPMGTTLKELIFDIGG-GIKGGKRFKALQIGGPSGGCIPED-MLD 439 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L G+ +G+ +++VMD ++ F + ESCG+CTPCREGT M+ Sbjct: 440 LPIDYESLTGAGAMMGSGSIVVMDEDNCMVNTARFFLNFTERESCGKCTPCREGTKQMLN 499 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ER+ +G ++ LL + + ++ + C LG +A P+ ++ FR + + + Sbjct: 500 ILERITRGEGSPSDLSLLEFLGQVVKATSFCGLGTSAPNPVLTTLRFFRSEYLQHVTE-R 558 Query: 421 RCN 423 RC+ Sbjct: 559 RCS 561 >gi|225621401|ref|YP_002722660.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kDa) subunit [Brachyspira hyodysenteriae WA1] gi|225216222|gb|ACN84956.1| DH:ubiquinone oxidoreductase, DH-binding (51 kDa) subunit [Brachyspira hyodysenteriae WA1] Length = 562 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 157/419 (37%), Positives = 240/419 (57%), Gaps = 6/419 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + + + K+L E D +INE+ SGLRGRGGA Sbjct: 138 FYQKQRRIVLKNCGMIDPENIDEYIGNDGYKALSKVLFEMTPDDVINEMHTSGLRGRGGA 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KWSF +V SD Y+V NADE +PG DR I+ +PH++IE IA + IGA Sbjct: 198 GFPTWKKWSFTKEVKSD-QKYIVCNADEGDPGAYMDRSILEGDPHSVIEAMTIAGYTIGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++Y+R E+ E ++ A+ + Y GLLG + D+ + GAGA++CGEETA Sbjct: 257 NKGYLYIRAEYGLAVERVRIALKQAYDYGLLGEKILGSDFSFDLDIRLGAGAFVCGEETA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G PR +PPFPA GL+ PT +NNVE+ A V I+ G W++ G EN+ Sbjct: 317 LLASIEGNRGTPRPRPPFPAIKGLFEKPTVINNVETFANVTAIINNGGDWFASIGTENST 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G+VN VE M T E++ GGI + V GG S LP Sbjct: 377 GTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGGGIPND-KFVKGVQTGGPSGGILPES- 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + G +D+D L ++GS +G+ +IV+D ++++ F ESCG+C PCR G Sbjct: 435 LFGTRIDFDNLVKLGSMMGSGGMIVIDEDSNMVDFAKFYLGFCVDESCGKCVPCRVGGMQ 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M++++E+ K A++ +I L +++ + ++CALG AA P+ +K+F + I Sbjct: 495 MLKILEKFTKKRAKEDDIQKLRDIALTMRKASLCALGSTAANPVMSTLKHFEEEYKAGI 553 >gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium enrichment culture clone BF] Length = 597 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + + ++R ++ + K+L +I ++K +GLRGRGG Sbjct: 111 FYAKQQRVALRNCGHINPEYIQEYIARDGYEALAKVLTTMTPAQVIEDMKIAGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K Y++ NADE +PG DR ++ +PH+++EG +IA++AIGA Sbjct: 171 GFPTGLKWDFASKSPGP-KKYIICNADEGDPGAFMDRSVLEGDPHSVLEGMMIAAYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + GLLG N G++ + + GAGA++CGEETA Sbjct: 230 DEGYIYVRAEYPLAIKRLKVAIAQAEELGLLGENIMGSGFNCTLHIKEGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G P +PPFPA GL+ P+ +NNVE+ A VP I GA Y+ G E ++ Sbjct: 290 LMASIEGSRGMPNPRPPFPAVKGLWEKPSNINNVETFANVPVIYLNGAEKYASVGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V E M IT E+I GGI AV GG S C+P Q Sbjct: 350 GTKVFALTGKVRNTGLAEVPMGITLREIIFDIGGGI-MDDKKFKAVQIGGPSGGCIP-EQ 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD L +G+ +G+ ++VMD ++ ++ F + ESCG+C PCREGT Sbjct: 408 HLDTPVDYDSLIALGAMMGSGGLVVMDETSCMVDVARFFLNFTQKESCGKCIPCREGTMR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G +I L + I+ +CALG +A PI ++ FR E I Sbjct: 468 MLEILEKICAGKGVPEDITTLETLGAAIKNTALCALGQSAPNPILSTLRYFRHEYEAHI- 526 Query: 418 QYHRCN 423 +C Sbjct: 527 HDKKCP 532 >gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 623 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 157/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + +S ++ +++G + + K+L + + + S LRGRGG Sbjct: 137 FYKKQTRMVLKNCGSINAESFAEYVAKGGYQALGKVLFDMEPQEVCQSILDSNLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ G KW + K S + Y+V N DE +PG DR IM +PH +IEG IA +A + Sbjct: 197 GYPAGRKWQQVLKQDS-KIKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKS 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+++ G+LG N G+ DI ++ GAGA++CGE +A Sbjct: 256 TSGYIYVRAEYPLAVERLRIAIEDARKHGMLGENILNSGFSFDININKGAGAFVCGEGSA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG++G PR+KPP GL+ PT +NNVE+ A VP+I+ G+ WY G G EN+ Sbjct: 316 LTASIEGERGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPSIIINGSEWYKGIGPENSP 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+I+G+VN +E M T E+I GGI+ AV GG S CL Sbjct: 376 GTKAFAITGNVNNTGLIEVPMGTTLREVIFDIGGGIKDN-KKFKAVQIGGPSGGCLTEEH 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK++G+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 435 LE-LPLDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKR 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++V G K ++DLL E++ I +C LG +AA P+ +K FR E + Sbjct: 494 MLEILEKIVNGKGTKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVI 553 Query: 418 QYHRC 422 +C Sbjct: 554 D-KKC 557 >gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. SR1/5] Length = 623 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 154/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q RI N + +S+ + +S G + + K E +I+E+ SGLRGRGGA Sbjct: 136 FLNQQTRIVLENCGKIDAESIDEYISVGGFSAMAKAFFEMTPQGVIDEISKSGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + S++ Y+V N DE +PG D +M +P+ +IEG VIA++A+GA Sbjct: 196 GFPAGKKWSQVARQ-SEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ + GLLG N G + + ++ GAGA++CGE +A Sbjct: 255 EDGYIYVRAEYPLSVQRLRMAIEQAESYGLLGDNILGSGINFHLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+G PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 315 LTASIEGNRGMPRVKPPRTVEQGLWGKPTVLNNVETYANVPKIILQGADWFHTIGTEGSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M + +I GG++ G V GG S CL Q Sbjct: 375 GTKTFSLTGSIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIDDQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D +K++ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 434 I-DHPLDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR E I Sbjct: 493 MLEILERIVAGKGELSDLDELEELANMVQSMALCGLGKSAPLPVISTLKRFRDEYVEHIV 552 Query: 418 QYHRC 422 +C Sbjct: 553 D-KKC 556 >gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] Length = 640 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 151/423 (35%), Positives = 232/423 (54%), Gaps = 6/423 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q+R + + + +++ D + RG + + K L + + ++ EV + LRGRGG Sbjct: 131 FYKYQERTVLGDNEHINPQNIEDYIQRGGYSALVKALFQMTPESVLEEVDTANLRGRGGD 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW D Y++VN DE +PG DR IM PH ++EG I +FA+GA Sbjct: 191 GFPAGKKWRTTRDAP-DPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAVGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E+L AA+ + GLLG N G+D + VH GAGA++ GE +A Sbjct: 250 KEGYIYVRAEYPLAVENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ ++EG+ G+PR K A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++ Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN VE M T ++I K GG+R + AV GG S C+P Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +DYD L ++GS +G+ +I+MD T ++ F ESCG+C PCREG Sbjct: 428 LLDSPVDYDVLSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ +G ++D L ++S + +CALG A P+ +K FR + I Sbjct: 488 LVEILTRITEGKGTMADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547 Query: 418 QYH 420 H Sbjct: 548 NKH 550 >gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] Length = 631 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW F SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFPTGKKWGFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILNTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ GA+WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAESGLWNKPTVVNNVETLANIPAIINNGANWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M + E+I GGI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTSLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F E ++ Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|226939461|ref|YP_002794534.1| NuoF [Laribacter hongkongensis HLHK9] gi|226714387|gb|ACO73525.1| NuoF [Laribacter hongkongensis HLHK9] Length = 431 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 208/410 (50%), Positives = 263/410 (64%), Gaps = 7/410 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L + RG + + KI+ + ++ +I EVK S LRGRGGAGF TG+KWSFMP+ Sbjct: 19 NCWKLDAYVKRGGYQALKKIIGNKIPQEDVIAEVKGSNLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 YLV N DE EPGT KDRDI R PH LIEG +IA++A+G + Y+ GE E Sbjct: 79 PG-DKYLVCNTDEGEPGTFKDRDIHRFNPHALIEGMIIAAYAMGVKRGYNYIHGEIFEEY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + + A+DE +GLLG++ + D+ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEEALDEARRAGLLGNSILDSEFSFDLFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN ES A VP I+R G + G+ NN GTKLFS+SGHVN P Sbjct: 198 PPFPASFGLYGKPTTINNTESFASVPFIIRDGGQSFLEKGKPNNGGTKLFSVSGHVNRPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F EL+E G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NFEVPLGTPFAELLEMAGGM--KDGKKLKAVIPGGSSAPVLPADIMMDCTMDYDSIAKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVIVM+ ++KA+ RL+ FY ESCGQCTPCREGTGW+ R++ R+ G + Sbjct: 316 SMLGSGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRIIHRIEHGEGRP 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++DLL V N+ GRTICAL DAA +P++ K+FR E I ++ +C Sbjct: 376 EDLDLLASVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYHI-EHKKC 424 >gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] Length = 598 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 158/423 (37%), Positives = 243/423 (57%), Gaps = 6/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61 Q + +N + +S+ + +++ + V ++L +I+E+K SGLRGRGG GF Sbjct: 116 KQQRVVLSNCGKINPESIEEYIAQDGYQAVGEVLTTMEPQEVIDEIKKSGLRGRGGGGFP 175 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW F D Y++ NADE +PG DR ++ +PH L+EG +IA +AIGA Sbjct: 176 TGVKWQFAYDAEGD-KKYIICNADEGDPGAFMDRSLLEGDPHKLLEGMIIAGYAIGADEG 234 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ E L+ A+D+ GLLG N + D+ + GAGA++CGEETAL+ Sbjct: 235 YIYVRAEYPLAIERLEKAIDQANEHGLLGENLFGTDFSFDLQIKAGAGAFVCGEETALMA 294 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G PR +PPFPA GL+G PT +NNVE+ VP I+ GA +S G E+++GTK Sbjct: 295 SIEGERGMPRPRPPFPAQKGLWGKPTNINNVETYGNVPEIINNGAEAFSEIGTEDSKGTK 354 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N E M IT E+ GG + AV GG S CLP ++ Sbjct: 355 VFALTGKINNTGLAEVPMGITMREI-IDDIGGGIDEGKDFKAVQIGGPSGGCLPEEKL-D 412 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DYD L + G+ +G+ ++VMD T ++ F ESCG+CTPCREGT M+ Sbjct: 413 LPIDYDSLLDAGAMMGSGGLVVMDEDTCMVDVARFFLNFTVSESCGKCTPCREGTKRMLE 472 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++E++ G +ID L +++ I+ ++C LG A P+ ++ FR E +++ Sbjct: 473 ILEKITDGEGTLADIDKLESLAETIKTASLCGLGQTAPNPVLSTLRYFRDEYEAHVEE-Q 531 Query: 421 RCN 423 C Sbjct: 532 TCP 534 >gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 491 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 153/425 (36%), Positives = 234/425 (55%), Gaps = 6/425 (1%) Query: 3 TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 Q RI T N + +S+ D ++ ++ + K+L +++ VK SGLRGRGGAGF Sbjct: 8 KKQLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW +D Y+V NADE +PG DR ++ +PH+++E I +AIGA Sbjct: 68 TGIKWGIALGNKAD-QKYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATRG 126 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ + L+ A+D+ GLLG N G+D DI + +GAGA++CGEETAL+ Sbjct: 127 TVYIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIR 186 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+P KPPFPA G + PT VNNVE+ A +P I+ GA W+SG G ++GTK Sbjct: 187 SMEGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTK 246 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G + +E M I+ E+I GG AV GG S L A + Sbjct: 247 VFALAGKIQNVGLIEVPMGISLREVIFDIGGGCP-DGKAFKAVQTGGPSGGAL-ANKDLD 304 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + Sbjct: 305 VAIDYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYE 364 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R+ KG + ++D L +S+ I+ +C LG PI + F E +D Sbjct: 365 ILDRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD-K 423 Query: 421 RCNFQ 425 +C Sbjct: 424 KCPAH 428 >gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4] Length = 597 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 152/425 (35%), Positives = 232/425 (54%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ ++++R + + K L E + ++ E+K SGLRGRGGA Sbjct: 110 FYKKQLRIALRNCGFIDPENIEEAIARDGYAALGKCLTEMTPEQVVAEIKKSGLRGRGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K Y+V NADE +PG DR ++ +PH+++E I + IGA Sbjct: 170 GFPTGLKWEIAAKSRPGEQKYVVCNADEGDPGAFMDRSLLEGDPHSILEAMAICGYCIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ LQ A+ + GLLG + G++ +I + +GAGA++CGEETA Sbjct: 230 DKGLIYIRAEYPLAIHRLQVAIQQAEEYGLLGKDILGTGFNFEIELRYGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P KPPFPA G G PT VNNVE+ A +P I+ +GA W++ G E ++ Sbjct: 290 LIHSMEGKRGEPTFKPPFPAQSGYLGKPTNVNNVETYANIPVIINKGADWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M IT E+ GG G AV GG S CL Sbjct: 350 GTKVFALAGKINNVGLIEVPMGITLREI-IYEIGGGIKGGKKFKAVQTGGPSGGCLTEKH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 409 L-DTPIDYDSLVAAGSMMGSGGMIVMDEDDCMVAIAKFYLGFTVDESCGKCTPCRVGNRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ G +++ L +S I+ +C LG + P+ I NF E + Sbjct: 468 LLEILTKITDGNGTMEDLEELKNLSAVIKDTALCGLGQTSPNPVLSTINNFWDEYVEHVT 527 Query: 418 QYHRC 422 + +C Sbjct: 528 E-KKC 531 >gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] Length = 631 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KWSF SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ RGA WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINRGADWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GGI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F E ++ Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFIDEYEAHVN 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 488 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 153/424 (36%), Positives = 237/424 (55%), Gaps = 7/424 (1%) Query: 3 TDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 Q RI T G + + + ++ G + + + L + +I+E+ SGLRGRGGAGF Sbjct: 4 KKQLRIATRNSGFIDPEKVDAYIAVGGYQAIGRCLNDMTPSQVIDEMTRSGLRGRGGAGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F K SD Y+V NADE +PG DR ++ +PH+++EG ++A +A+GA+ Sbjct: 64 PTGVKWGFAAKYESD-TKYIVCNADEGDPGAFMDRAVLEGDPHSVLEGMLVAGYAVGANH 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 IY+R E+ + L+ A+ + A GLLG + + DI + +GAGA++CGEETAL+ Sbjct: 123 GVIYIRAEYPLAIKRLRTAIKQASAYGLLGEHILGSDFSFDIELKYGAGAFVCGEETALI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S++G +G+P KPPFPA G +G PT VNNVE++A VP I+ +GA W+S G +GT Sbjct: 183 RSIQGNRGEPYTKPPFPAESGYWGKPTIVNNVETLANVPAIMMKGADWFSSIGSPTAKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+ G + +E M IT E++ GG G AV GG S L + Sbjct: 243 KVFSLVGKITNVGLIEVPMGITLREVVFDIGGGCP-GGKKFKAVQTGGPSGGVLTYKDL- 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A +DY+ L S +G+ +IVMD ++ F ESCG+CTPCR G+ + Sbjct: 301 DAPIDYENLAARESIMGSGGMIVMDEDACMVAIAKFFLQFTMDESCGKCTPCRVGSKRLW 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++++ G A + +++ L +++ I+ +C LG PI ++ FR I + Sbjct: 361 ELLDKITLGQATEDDLETLVTLARTIKDTALCGLGQTMPNPILSTVRVFRDEYLAHIKE- 419 Query: 420 HRCN 423 RC Sbjct: 420 KRCP 423 >gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 552 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 152/425 (35%), Positives = 238/425 (56%), Gaps = 6/425 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 + + + + + + L ++RG + + L E + + E+ SG+RGRGGAG Sbjct: 121 FVKQKKIVLADSGTVDPEKLESYVARGGYTALGHALREMTPEEVCEEIARSGIRGRGGAG 180 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + +G+KW + K + Y+V N DE +PG DR +M +PH ++EG IA +A+GA Sbjct: 181 YPSGLKWHMVRKAPGE-KKYVVANGDEGDPGAYMDRTLMESDPHRVLEGMAIAGYAVGAD 239 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IYVRGE+ + L+ A+ GLLGS + I + GAGA++CGEETAL Sbjct: 240 QGYIYVRGEYPLAAKRLEKAIRAAERRGLLGSRVLDSNFSFRIDIRMGAGAFVCGEETAL 299 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+ G++GQP +PP+PAN GL+G PT +NNVE+ + I+ GA WY+ FG E ++G Sbjct: 300 MASIMGRRGQPVPRPPYPANKGLWGGPTLINNVETFGNIAAIIGNGAEWYASFGTEKSKG 359 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 K+F+++G VN +E + IT E++ GGI GG A GG S C+PA + Sbjct: 360 AKIFALAGKVNNTGLIEVPIGITLREIVYDIGGGIPGG-RAFKAAQTGGPSGGCIPAEYL 418 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ L+++GS +G+ +IVMD + + F ESCG+CTPCR GT M Sbjct: 419 -DTPIDYETLQKLGSIMGSGGLIVMDDQSCMPDVAKFFMEFCMDESCGKCTPCRVGTVQM 477 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+++++ G A ++ L E+ ++ ++C LG A PI ++ FR E I Sbjct: 478 HRMLDKITNGTATMDDLKRLEELCLMVKESSLCGLGQTAPNPIYSTLRYFRDEYEAHIKD 537 Query: 419 YHRCN 423 +H C Sbjct: 538 HH-CP 541 >gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548] gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548] Length = 526 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 148/426 (34%), Positives = 233/426 (54%), Gaps = 6/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R + N + S+ D + + + K + E R II+ VK SGLRGRGGA Sbjct: 40 FFENQKRLVLKNCGIIDPSSIEDYIGLDGYKALYKAIFELDRKEIIDIVKDSGLRGRGGA 99 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW +D Y++ NADE +PG DR ++ +PH+++E I + AIG+ Sbjct: 100 GFPTGRKWEAAFLQDTDI-KYIICNADEGDPGAFMDRSVLELDPHSVLEAMAICARAIGS 158 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ + +L+ A+D+ LLG N + DI + GAGA++CGE TA Sbjct: 159 NKGFIYVRAEYPKAVRALEIAIDQAKKYNLLGDNILGSDFSFDIELRLGAGAFVCGEGTA 218 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EG++G PR K GL+G PT +NNVE+ A + I+ +G++W+ FG E + Sbjct: 219 LMESIEGRRGMPRNKEYRTTVRGLWGKPTVINNVETFANIAQIINKGSAWFRSFGTEKSP 278 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++SG V VE M + D+++ GI+ D AV GG S C+P + Sbjct: 279 GTKVFALSGKVKNAGLVEVEMGTSIDQIVYDIGKGIQNDKDA-KAVQTGGPSGGCIPK-R 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + D++ L +GS +G+ ++VMD ++ F ESCG+CTPCR G Sbjct: 337 LFDTACDFESLGAIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++ + KG A +D L E+S+ + ++C LG ++ PI ++ F E ++ Sbjct: 397 LFEMLDDITKGKANHETLDKLEELSEIVSEASLCGLGKSSPNPIISTMRYFYDEYEAHVN 456 Query: 418 QYHRCN 423 + C Sbjct: 457 ENKTCP 462 >gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 598 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +I+ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+++ GLLG N ++ DI + GAGA++CGEETA Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN +E M T E++E G G AV GG S C+PA Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G+ +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +++ L E++ +I+ +C LG A P+ ++ FR E + Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 603 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 160/425 (37%), Positives = 242/425 (56%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 + Q RI N + + + D ++ G + + K L R +INE+K SGLRGRGG G Sbjct: 120 FFSPQRRIVLKNCGFINPEDIDDYIAVGGYQGIQKALGGSRMDVINEIKKSGLRGRGGGG 179 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TGMKW F D YL+ NADE +PG DR ++ +PH ++EG +IA++AIGA Sbjct: 180 FPTGMKWEFCHNSPGD-QKYLICNADEGDPGAFMDRAVLEGDPHAVLEGMMIAAYAIGAS 238 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY R E+ E A+D+ G LG D +I + GAGA++CGEETAL Sbjct: 239 KAYIYCRAEYPMAYERSMIAIDQATKRGFLGKKIFGSDMDFEIKLKLGAGAFVCGEETAL 298 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G P +PPFPA GL+G PT +NNVE+ + TI+ +G W++ G E ++G Sbjct: 299 MASIEGKRGMPMPRPPFPAVKGLFGKPTNINNVETFGNIATIMTKGGDWFASVGTEKSKG 358 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G ++Y VE M E+I++ GGI A GG S C+P+ Sbjct: 359 TKVFALAGKISYSGLVEIPMGTPLREIIDEIGGGIPNKRK-FKAAQTGGPSGGCIPSEH- 416 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ L ++GS +G+ +IV D +T ++ F + ESCG+C PCR GT M Sbjct: 417 FDIPMDYENLTQVGSIMGSGGLIVTDETTCMVDMAKFFLGFTQKESCGKCVPCRLGTKKM 476 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + V+ + KG A +++ L E++++++G ++C LG A P+ ++ FR E I + Sbjct: 477 LEVLGDISKGKATMEDLEQLLELAQDVKGGSLCGLGQTAPNPVLSTVRYFRDEYEAHILR 536 Query: 419 YHRCN 423 C Sbjct: 537 -KECP 540 >gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis OB47] gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis OB47] Length = 598 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +I+ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGLINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+++ GLLG N ++ DI + GAGA++CGEETA Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAINQAREYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN +E M T E++E G G AV GG S C+PA Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G+ +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +++ L E++ +I+ +C LG A P+ ++ FR E + Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] Length = 597 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 163/425 (38%), Positives = 242/425 (56%), Gaps = 5/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R + + + +SL D + G ++ + K + + +I EVKASGLRGRGG G Sbjct: 113 FYDKQKRYVLHDCGRVDPESLEDYVKLGGYEAIKKAITMKPEEVIEEVKASGLRGRGGGG 172 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW+F ++ YL+ NADE +PG DR I+ PH +IEG +IA +AIG Sbjct: 173 FPTGLKWTFCRGAKTEDHKYLICNADEGDPGAFMDRSIIEGNPHAVIEGMLIAGYAIGCD 232 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ E + A+ + A+G LG Y+ + + GAGA++CGEETAL Sbjct: 233 EGYIYCRAEYPLAIERVIKAIKDAEAAGYLGKGVFSSDYNFKLKLKEGAGAFVCGEETAL 292 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++G PR +PPFPA GL+ P+ VNNVE+ A +P I+ +G+ WYSG G E ++G Sbjct: 293 IASIEGERGMPRPRPPFPAVRGLWQKPSNVNNVETFANLPNIILKGSGWYSGIGTEKSKG 352 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F++SG + VE M IT ELI GGI AV GG S CL + Sbjct: 353 TKIFALSGKIKSSGLVEVPMGITVRELIFDVGGGIPKKRK-FKAVQLGGPSGGCLTPDHL 411 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L G+ +G+ V+VMD + ++ F + ESCG+C PCR GT M Sbjct: 412 E-TPIDYDSLIAAGAMMGSGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKTM 470 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++R+ G ++ +I+LL ++ ++I+ ++C LG A P+ IK FR E I Sbjct: 471 LDILDRITTGKGREGDIELLQQIGEDIKTSSLCGLGQTAPNPVLTTIKYFRHEYEAHIKD 530 Query: 419 YHRCN 423 +C Sbjct: 531 -KKCP 534 >gi|206900196|ref|YP_002251393.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] gi|206739299|gb|ACI18357.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] Length = 545 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 168/427 (39%), Positives = 247/427 (57%), Gaps = 10/427 (2%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 Q RI N + +S+ + +++G ++ + K L E + +I E+KASGLRGRGGAGF Sbjct: 112 RKQVRIVLRNSGVINPESIEEYIAQGGFEGLSKALSEMTPENVIKEIKASGLRGRGGAGF 171 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F KV SD Y+V NADE EPGT KDR I+ +P ++E IA +AIGA Sbjct: 172 PAGLKWEFTYKVPSD-EKYVVCNADEGEPGTFKDRLILEGDPFRIVEAMAIAGYAIGAKK 230 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+RGE+ + +Q A++ GLLG N + D+ V GAGAYICGEETAL+ Sbjct: 231 GYIYIRGEYKLSIDRMQKAINVAKEYGLLGDNILGTNFSFDLEVRKGAGAYICGEETALI 290 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPP+P + GL PT VNNVE++A VP I++ GA W+ FG E+ GT Sbjct: 291 ESLEGKRGIPRIKPPYPVSQGLRNKPTLVNNVETLANVPDIIKNGAQWFRQFGTESCPGT 350 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+++I G V +E M ++I ++ GGI+ + GG++ L +M Sbjct: 351 KVYTILGDVVNAGLIEVEMGTPLRDIIFQYGGGIK-DGKKFKCALVGGAAGAFL-GNEML 408 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D LKE + LG+ A++VM I+ + + F+KHESCG+CTPCR GT ++ Sbjct: 409 DVKMDFDNLKEYKAVLGSGAILVMSDGVCIVDMLKSILRFFKHESCGRCTPCRVGTKRLV 468 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++E+ + ++D + +S ++ + C LG + P+ IK FR Sbjct: 469 EIIEKFASLEGTEEDLDEMLNISLVMKDTSFCPLGQSVYLPVSSAIKYFRDEFISHFKDK 528 Query: 420 H----RC 422 + RC Sbjct: 529 YCVSGRC 535 >gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit [Candidatus Kuenenia stuttgartiensis] Length = 594 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 150/423 (35%), Positives = 237/423 (56%), Gaps = 6/423 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I N + ++ + +G ++ V K+L +I E+K SGLRGRGGA Sbjct: 108 FRQKQHKIVLENCGIIDPDDIAPYIKKGGYEAVKKVLGTMSPQQVIEEIKTSGLRGRGGA 167 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + Y++ NADE +PG DR ++ +PH +IEG +I +AIGA Sbjct: 168 GFPTGLKWQFARNSTGE-KKYMICNADEGDPGAFMDRAVLEGDPHKVIEGLIIGGYAIGA 226 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+ + LLG N + + + GAGA++CGEETA Sbjct: 227 EHGYVYVRAEYPLAIKRLKLAISQATEKNLLGHNILNSEFSFHLKIKEGAGAFVCGEETA 286 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PRLKPPFPA GL+G PT +NNVE++A VP I+ GA Y+ +G E ++ Sbjct: 287 LIASIEGERGHPRLKPPFPAGSGLWGYPTNINNVETLASVPWIINNGAKIYASYGTEKSK 346 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M ++I GG AV GG S C+P + Sbjct: 347 GTKVFSLAGKIARGGLIEVDMGTPLRDIIYTIGGGT-SSGKPFKAVQLGGPSGGCVP-ER 404 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + G+ +G+ ++VMD T I+ F ++ESCG+CT CR GT Sbjct: 405 LLDTPVDYESISVTGAIMGSGGMVVMDDDTCIVDVAKFFLTFTQNESCGKCTFCRIGTKR 464 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++E++ +G ++D L +S+ ++ ++C LG A PI +K F+ E I Sbjct: 465 LLEILEKITEGRGGMADLDELESLSEKVKDLSLCGLGKTAPNPIMTTLKYFKDEYVEHIK 524 Query: 418 QYH 420 + Sbjct: 525 ENK 527 >gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus 6A] gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus 6A] Length = 598 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +I+ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+++ GLLG N ++ DI + GAGA++CGEETA Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN +E M T E++E G G AV GG S C+PA Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G+ +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +++ L E++ +I+ +C LG A P+ ++ FR E + Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille] gi|151280658|gb|ABR89068.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille] Length = 431 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 207/416 (49%), Positives = 270/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65 IF L G L + + RG + ++ +IL + +I EVKAS LRGRGGAGF +G+K Sbjct: 13 IFAGLTG-DNWGLEEYVKRGGYASLKRILSEGMTPEQVIAEVKASTLRGRGGAGFPSGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK + YLV N+DE EPGT KDRDI+R+ PH++IEG IA++A+G + Y+ Sbjct: 72 WSFMPKNFAG-QKYLVCNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGVSVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E + + A+++ A+G LG N + + HG GAYICGEETALLESLEG Sbjct: 131 HGEIFAEYDRFEEALEQARAAGFLGDNILGSTHSFQLHAFHGFGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA Y+ G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGAEAYAAIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F EL++ G G L AVIPGGSSVP + M MD Sbjct: 251 SGDVENPGNYEIPLGTPFAELLKLAGG--VRGGKKLKAVIPGGSSVPVVKGDLMMATDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 309 YDSVAKAGSMLGSGAVIVMDETRCMVKALLRLSYFYYEESCGQCTPCREGTGWLYRMVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G + ++D+L V+ NI+GRTICALGDAAA P++ +I+ FR I+ H Sbjct: 369 IENGQGRPEDLDMLNSVADNIQGRTICALGDAAAMPVRAMIQQFREEFVYHIEHKH 424 >gi|254496126|ref|ZP_05109025.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12] gi|254354667|gb|EET13303.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12] Length = 428 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 213/415 (51%), Positives = 275/415 (66%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + ++ + +LS S G + KIL++ II+E+K S LRGRGGAGF TG+KW Sbjct: 12 YRTVHLPEPWTLSAYESVGGYSAWRKILKEQTSPQLIIDELKTSALRGRGGAGFPTGLKW 71 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFM + S Y+V N+DE EPGTCKDR+I+ PH LIEG IA + +G+ + Y+R Sbjct: 72 SFMNRN-SPVQKYVVCNSDEGEPGTCKDREILALNPHQLIEGMAIAGYVMGSSVGYNYIR 130 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF E +AA+ E YA+GLLG N G D D+ H GAGAYICGEETALL SLEGK Sbjct: 131 GEFWLPYERTEAALKEAYAAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSLEGK 190 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPAN GLYG PTT+NN E+ A VP I+ +G W+ G+ NN GTK FS+S Sbjct: 191 KGQPRFKPPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGTKCFSVS 250 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHVN P E + F L+E G G + AVIPGGSS+P LP M G MDY Sbjct: 251 GHVNKPGNFEIPLGTPFKTLLELAGG--VKGDRRIKAVIPGGSSMPVLPGDVMMGLDMDY 308 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D +++ GSGLG+ AVI+MD +T ++ A++R+S FY ESCGQCTPCREGTGW++R++ R+ Sbjct: 309 DSIQKAGSGLGSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRI 368 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +G + +I+ L V+ NIEGRTICALG+AAAWP+Q +K+F + I Sbjct: 369 KEGHGEPGDIEKLVNVADNIEGRTICALGEAAAWPVQSFVKHFYNEFDYFIKHKR 423 >gi|88608878|ref|YP_506590.1| NADH dehydrogenase I subunit F [Neorickettsia sennetsu str. Miyayama] gi|88601047|gb|ABD46515.1| NADH dehydrogenase I, F subunit [Neorickettsia sennetsu str. Miyayama] Length = 413 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 250/416 (60%), Positives = 309/416 (74%), Gaps = 7/416 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIF+N+ +G +LS+++ RG W + K L+K +WI+ E+K SGLRGRGGAGF Sbjct: 1 MLKPEDRIFSNIQKREGITLSEALRRGDWKDTKKFLDKEPEWIVEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+ Sbjct: 61 PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF E L+ + E + L+ K I VH GAGAYICGEETALL Sbjct: 121 VSYIYIRGEFYNESLVLEKVIQEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPPFPA GLYG PTT+NNVESIA VPTIL RG+ W++ G +N+ GT Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE++ I LIE++ GG+ GGWDNLLAVIPGGSSVP + Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEEYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GS LGT +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ Sbjct: 295 TVTMDFDSLRAVGSSLGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +M++L +G +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR IE R Sbjct: 355 SIMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRDEIEAR 410 >gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis 108] gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis 108] Length = 598 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +++ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVVDWVKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+++ GLLG N ++ DI + GAGA++CGEETA Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTNFEFDIEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN +E M T E++E G G AV GG S C+PA Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G+ +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +++ L E++ +I+ +C LG A P+ ++ FR E + Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 617 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 159/425 (37%), Positives = 251/425 (59%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 M+ Q RI N + ++ +++G + + + G + +I E+KASGLRGRGGAG Sbjct: 132 MIQPQVRIVLRNCGIIDPTNIDHYLAQGGYSGMARAFSLGPEQVIEEMKASGLRGRGGAG 191 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F +D Y++ NADE +PG DR ++ +PH ++EG +IA +AIGA Sbjct: 192 FPTGVKWGFARSSVAD-QKYVICNADEGDPGAFMDRSVLEGDPHAVLEGLLIAGYAIGAT 250 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ E LQ A+ + G LG+N G+D DI + GAGA++CGEET+L Sbjct: 251 VGYVYCRAEYPLAIERLQDAIAQMREQGFLGANILGSGFDFDIKIKKGAGAFVCGEETSL 310 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 ++S+EGK+G P KPPFPA GL+G PT +NNVE++A V I+ +GA+WY+GFG E +RG Sbjct: 311 MQSIEGKRGMPLSKPPFPAVSGLFGKPTNINNVETLAAVSAIMEKGAAWYAGFGTEKSRG 370 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK F+++G + +E M I +I++ GG+ G AV GG S C+PA + Sbjct: 371 TKTFALAGKITRTGLIEVPMGIRLRTIIDEVGGGV-LGGKPFKAVQTGGPSGGCIPAQFI 429 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ L +GS +G+ +IV+D + ++ F ++ESCG+C PCR GT + Sbjct: 430 -DLEVDYEHLASVGSIMGSGGMIVIDAESCMVDMARYFLTFTENESCGKCVPCRMGTQHL 488 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +R++ + +G ++D L ++ ++ ++C LG AA P+ ++ F I+ Sbjct: 489 LRILTGITQGKGTLDQLDTLRKIGDTMKSASLCGLGQTAANPVLTTLQYFEEEYRAHIED 548 Query: 419 YHRCN 423 H+C Sbjct: 549 -HKCP 552 >gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] Length = 600 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 147/428 (34%), Positives = 227/428 (53%), Gaps = 8/428 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGG 57 Q RI N + + + + + + + +IL + +I+E+ ASGLRGRGG Sbjct: 111 FYKHQLRIALRNCGVINPEDIDEYIGVDGYAALGRILTEKIPPQQVIDEILASGLRGRGG 170 Query: 58 AGFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 AGF TG KW F S D ++ NADE +PG DR ++ +PH++IE IA + I Sbjct: 171 AGFPTGRKWQFTHDAVSPDGVKFVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYCI 230 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175 GA +IYVR E+ + L+ A+ + GLLG N + ++ + GAGA++CGEE Sbjct: 231 GAQQGYIYVRAEYPIAVKRLEIAIKQAKEYGLLGDNIFGSDFSFNLELRLGAGAFVCGEE 290 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EGK+G+P +PPFPAN GL+ PT +NNVE+ A + IL GA ++ G Sbjct: 291 TALMTSIEGKRGEPHPRPPFPANKGLFERPTLLNNVETYANITWILNHGADKFAAIGTPK 350 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + GTK+F++ G + VE M +IE GG A GG S C+PA Sbjct: 351 STGTKVFALGGKITNTGLVEIPMGTPLRTVIEDIGGGCP-NGKKFKAAQTGGPSGGCIPA 409 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + MDYD L +GS +G+ +IVMD ++ F ESCG+C+ CR GT Sbjct: 410 S-LIDTPMDYDSLGAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFIVDESCGKCSVCRIGT 468 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 ++ ++ ++ +G ++D + E+ +++ +C LG A P+ +K+FR Sbjct: 469 KRLLGLLTKITEGEGTLEDLDTIEELCYHLKSSALCGLGQTAPNPVLSTLKHFRDEYVAH 528 Query: 416 IDQYHRCN 423 + + RC Sbjct: 529 VVE-KRCP 535 >gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] Length = 598 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +I+ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGIINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+++ GLLG N ++ DI + GAGA++CGEETA Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAINQAREYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+G PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN +E M T E++E G G AV GG S C+PA Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G+ +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 408 LIDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +++ L E++ +I+ +C LG A P+ ++ FR E + Sbjct: 468 MLEILQKITTGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|237748886|ref|ZP_04579366.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13] gi|229380248|gb|EEO30339.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13] Length = 433 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 211/419 (50%), Positives = 277/419 (66%), Gaps = 8/419 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65 +F L G +L+D +SRG ++ +IL R+ II+EV+ASGLRGRGGAGF T +K Sbjct: 13 LFRGLTG-DNWTLADYVSRGGYEQFKRILAERMPRERIIDEVRASGLRGRGGAGFPTAVK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W FMPK + YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G +IY+ Sbjct: 72 WGFMPKDHPGQM-YLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGYIYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E A+ + +GL+G + G+D ++ HG GAYICGEETALLES+EG Sbjct: 131 HGEIWAVYEQFGEAIRQAREAGLIGRDLQGSGFDFELHAFHGYGAYICGEETALLESMEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K+GQPR KPPFPA GLYG PTT+NNVE++A VP I+ G Y+ GR N GTK+F + Sbjct: 191 KRGQPRFKPPFPATNGLYGQPTTINNVETLAYVPFIMAMGGDAYAALGRNNCPGTKIFCL 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + I+F EL+E G + AVIPGGSS P LPA M MD Sbjct: 251 SGDVARPGNYEVPLGISFPELLELAGGM--KDGLAMKAVIPGGSSSPVLPAETMMQLNMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LGT VIV++ + ++KA+ LS FY +ESCGQCTPCREGTGW++ ++ER Sbjct: 309 YDSIAKAGSMLGTGGVIVLNETRCMVKALLNLSRFYWNESCGQCTPCREGTGWLVSLIER 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + G + ++DLL V+ NI GRTICALGDAAA P++ IK+FR E I ++ RC Sbjct: 369 IENGQGKTEDLDLLDNVAANIMGRTICALGDAAAMPVRSFIKHFRAEFEYHI-EHKRCP 426 >gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] Length = 631 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KWSF SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ +G WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINKGGDWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGEGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTAIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F E ++ Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|57234506|ref|YP_181467.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] gi|57224954|gb|AAW40011.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] Length = 623 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 165/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R +F N + S+ D ++ G + ++ K + + I+ EV SGLRGRGG Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIDDYLAVGGYKSLAKAISGLKPEEIVEEVIKSGLRGRGGG 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+ Sbjct: 196 GFPTGWKWKSC-RDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H A+IY+R E+ + A+ + GLLG N G+D+ I ++ G GA++CGE TA Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFDLKIHINRGGGAFVCGESTA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+PR K + GL+ PTT+NNVE+ A +P I+ +GA W++ G E ++ Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLHDKPTTLNNVETWANIPLIIEKGADWFNKIGTEGSK 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN +E M IT E++ GGI G A+ GG S CLP Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++ER+ KG ++ +I+LL ++S+ I+ ++CALG +A P+ IK FR E I Sbjct: 493 MRQILERITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVLSTIKYFRDEYEAHIR 552 Query: 418 QYHRCN 423 Q C Sbjct: 553 Q-KTCP 557 >gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7] gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7] Length = 631 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + +++S++ + + K + E D ++ + SGLRGRGG Sbjct: 146 FYKKQHRIALRNCGFINPEDITESIATKGYLALGKCITEMSADDVVKLIIDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWSF +D Y++ NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 206 GFPTGKKWSFAKAYDAD-QKYIICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ G+LG+N + +I + +GAGA++CGEETA Sbjct: 265 SKGVIYIRAEYPLAVSRLKTAIDQALECGVLGNNILGSEFSFNIDIRYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P KPPFPA GL+ PT VNNVE++A +P I+ GA WYS G ++ Sbjct: 325 LIHSVEGCRGEPTNKPPFPAESGLWDKPTCVNNVETLANIPAIINNGAEWYSSIGTATSK 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GGI+ G +V GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNGRK-FKSVQTGGPSGGCIPASN 443 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 444 L-DIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVEESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ G + +++ L E+++ I+ ++C LG A PI +K F E + Sbjct: 503 LLEILTKITNGQGTEDDLEKLKELAQTIKDTSLCGLGQTAPNPILSTMKYFADEYEAHVK 562 Query: 418 QYHRCN 423 + C Sbjct: 563 E-KSCP 567 >gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 3502] gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] Length = 631 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGLEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KWSF SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ RGA WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINRGADWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GGI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F + +D Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYKAHVD 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] Length = 597 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 163/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + +++ + ++ + + K+L E +I+EV SGLRGRGG Sbjct: 111 FYKRQKRVALRNCGLINPENIEEYIANDGYRALAKVLSEMTPQQVIDEVTRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW F D Y+V N DE +PG DR I+ +PHT++E IA +AIGA Sbjct: 171 GFPTGKKWQFAKDAPGD-VKYVVCNGDEGDPGAFMDRSILEGDPHTVLEAMAIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ GLLG N G++ DI + +GA++CGEETA Sbjct: 230 KEGYIYVRAEYPLAVKRLEIAIEQARERGLLGKNILGTGFEFDIFLRLRSGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR +PPFPA GL+G PT +NNVE+ A +P I+ GA W++ G E ++ Sbjct: 290 LLASIEGRRGEPRPRPPFPAIEGLWGKPTLINNVETFANIPPIILNGADWFASIGTERSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I GGI AV GG S C+PA Sbjct: 350 GTKVFAVGGKINNTGLVEIPMGTTLREVIYDIGGGIP-NGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++YD L + GS +G+ +IVMD T ++ F + ESCG+C PCR GT Sbjct: 408 LLDMPIEYDTLTQAGSMMGSGGMIVMDEDTCMVDIAKFFLTFTQDESCGKCPPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G ++ +I+LL ++KNI+ +C LG A P+ ++ FR E I Sbjct: 468 MLEILERITNGEGREGDIELLETLAKNIKASALCGLGQTAPNPVLSTLRYFRDEYEAHIR 527 Query: 418 QYHRCN 423 + +C Sbjct: 528 E-KKCP 532 >gi|300176713|emb|CBK24378.2| subunit NuoF (NDUFV1) [Blastocystis hominis] Length = 503 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 249/419 (59%), Positives = 308/419 (73%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLY + +M RG W ++LE G D II ++KASGLRGRGGA F Sbjct: 66 LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 125 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D +LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A Sbjct: 126 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 185 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A+ E Y G LG N+ GY+ D+ VH GAGAY+CGEE+A L Sbjct: 186 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 245 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG W++GFGR+NN G Sbjct: 246 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 305 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+ EL+EKH GG+RGGWDNL AVIPGG+S L Sbjct: 306 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 365 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYD L SGLG+AAVIVMD+STD++ AI LS FY HESCGQCTPCREG W+ Sbjct: 366 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 425 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R+ +G ++REID+L E+ IE TIC L DAA WPI+GL+++++ I ER Sbjct: 426 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRH 484 >gi|300123837|emb|CBK25108.2| subunit NuoF (NDUFV1) [Blastocystis hominis] Length = 490 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 249/419 (59%), Positives = 308/419 (73%), Gaps = 2/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+DQDRIFTNLY + +M RG W ++LE G D II ++KASGLRGRGGA F Sbjct: 53 LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 112 Query: 62 TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +G+KWSFMPK D +LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A Sbjct: 113 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 172 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A+ E Y G LG N+ GY+ D+ VH GAGAY+CGEE+A L Sbjct: 173 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 232 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG W++GFGR+NN G Sbjct: 233 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 292 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF+ISGHVN PC VEE MSI+ EL+EKH GG+RGGWDNL AVIPGG+S L Sbjct: 293 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 352 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A+MDYD L SGLG+AAVIVMD+STD++ AI LS FY HESCGQCTPCREG W+ Sbjct: 353 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 412 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +M R+ +G ++REID+L E+ IE TIC L DAA WPI+GL+++++ I ER Sbjct: 413 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRH 471 >gi|75910850|ref|YP_325146.1| respiratory-chain NADH dehydrogenase domain-containing protein [Anabaena variabilis ATCC 29413] gi|1032476|emb|CAA55873.1| hydrogenase subunit [Anabaena variabilis ATCC 29413] gi|75704575|gb|ABA24251.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Anabaena variabilis ATCC 29413] Length = 535 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 145/413 (35%), Positives = 241/413 (58%), Gaps = 5/413 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + ++ + + ++L E +++ V SGLRGRGGAG+ TG+KW Sbjct: 126 VLENSGKIDPERIQAYIAAQGYQALYQVLREMTPAGVVDSVNRSGLRGRGGAGYPTGLKW 185 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K + +++ NADE +PG DR ++ +PH ++EG IA++A+GA +IYVR Sbjct: 186 ATVAKAKGE-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGASQGYIYVR 244 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + LQ A+ + GLLGSN + +D I + GAGAY+CGEETAL+ S+EGK Sbjct: 245 AEYPIAIKRLQTAIHQAQRLGLLGSNIFESPFDFKIDIRIGAGAYVCGEETALMASIEGK 304 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G P +PP+PA GL+G PT +NNVE+ A + I+R+GA W++ G ++GTK+F+++ Sbjct: 305 RGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRKGADWFASIGTAKSKGTKVFALA 364 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + +E M + +++E+ GGI G AV GG S C+PA +DY Sbjct: 365 GKIRNTGLIEVPMGTSLRQIVEQMGGGIPDGG-VAKAVQTGGPSGGCIPASA-FDTPVDY 422 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L +GS +G+ +IVMD +T+++ F ESCG+C PCR GT + ++ ++ Sbjct: 423 ESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHGLLSKI 482 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +G A +++LL E+ ++ ++C LG +A P+ ++ FR I + Sbjct: 483 REGKASFADLELLEELCDMVKNTSLCGLGQSAPNPVFSTLRYFRDEYLALIAE 535 >gi|148244394|ref|YP_001219088.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii HA] gi|146326221|dbj|BAF61364.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii HA] Length = 422 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 218/412 (52%), Positives = 275/412 (66%), Gaps = 6/412 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 F NL Q SL + G + + KIL E + II+E+K SGLRGRGGAGF TG+KW Sbjct: 6 FKNLKKDQCWSLKIYEASGGYSSWRKILKGELTPEQIIDELKLSGLRGRGGAGFPTGLKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ SD Y+V N+DE EPGTCKDRDI+R PH +IEG I F + A + Y+R Sbjct: 66 SFMPR-HSDGQKYVVCNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF+ + ++A++E Y +GLLG N + D+ H GAGAYICGEETALLES+EGK Sbjct: 125 GEFMEPFKRFESALEEAYKAGLLGQNINNSSINFDLYTHLGAGAYICGEETALLESIEGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPANVGL+G PTT+NN ES A VP ILR G W++ G EN+ G KLFS+S Sbjct: 185 KGQPRFKPPFPANVGLFGKPTTINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M I+F +L+E G L AVIPGGSS P L A + MDY Sbjct: 245 GHVTNPANFEVPMGISFKDLLEMAGGM--RDGAKLKAVIPGGSSTPVLTAEIVMNMTMDY 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DG+++ GS LG +VIVM+ ST +++ + RL+ FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 303 DGIEKAGSMLGAGSVIVMNESTCMVEVLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + G ++ +IDLL V I G TICALGDAAA P++ ++NFR E I Sbjct: 363 IDGNGRQGDIDLLLSVQNKIMGNTICALGDAAAMPVESFLRNFREEFEYYIK 414 >gi|82702225|ref|YP_411791.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis ATCC 25196] gi|82410290|gb|ABB74399.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196] Length = 425 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 208/410 (50%), Positives = 265/410 (64%), Gaps = 7/410 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L++ R + + KIL + II EVK S LRGRGGAGF TG+KWSFMPK Sbjct: 18 NDWRLNNYEQREGYAALRKILSDKIPPEKIIEEVKKSALRGRGGAGFPTGLKWSFMPKQY 77 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++A+G + YV GE Sbjct: 78 EG-DKYLVCNSDEGEPGTFKDRDIMRYNPHMLIEGMLIGAYAMGIRAGYNYVHGEIWDVY 136 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E ++ AVDE A+G LG N + + HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 137 ERMEEAVDEARAAGYLGDNILGSDFSFQLYNHHGYGAYICGEETALLESLEGKKGQPRFK 196 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ A VP I+R G + G+ NN GTK+FS+SGHVN P Sbjct: 197 PPFPASFGLYGKPTTINNTETFASVPWIIRHGGDKFLQLGKPNNGGTKIFSVSGHVNKPG 256 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F L+E G G L IPGGSS+P LP M MDYD + + G Sbjct: 257 NYEVPLGTPFAALLEMAGGM--RGGRKLKGCIPGGSSMPVLPGDVMMQTDMDYDSIAKAG 314 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVI+MD +T +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + Sbjct: 315 SFLGSGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIVHRIETGKGRM 374 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++DLL ++ NI+GRTICALGDAAA P++ +I++FR + ++ +C Sbjct: 375 EDLDLLNNLADNIQGRTICALGDAAAMPVRAMIQHFRDEFAYHV-EHKKC 423 >gi|332526752|ref|ZP_08402854.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] gi|332111155|gb|EGJ11187.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] Length = 448 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 211/425 (49%), Positives = 270/425 (63%), Gaps = 13/425 (3%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58 Q +I+ L G L+D ++RG + + KIL D +I EVK S LRGRGGA Sbjct: 24 QPQIYAGLDGRN-WRLADYVARGGYSALKKILGADGGPGMTPDQVIAEVKLSALRGRGGA 82 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ P YLV N+DE EPGTCKDRDI+ + PH +IEG IA++A+G Sbjct: 83 GFPTGLKWSFMPRQFPG-PKYLVCNSDEGEPGTCKDRDILSYNPHIVIEGMCIAAYAMGI 141 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+ GE + + A+DE A+G LG N + + HG GAYICGEETA Sbjct: 142 RTGYNYIHGEIFEVYQRFEEALDEARAAGFLGDNILGSQHSFQLHAFHGFGAYICGEETA 201 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G Y G+ NN Sbjct: 202 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINHGGQAYLEVGKPNNG 261 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V P E M F L+E G L AVIPGGSS P LPA Sbjct: 262 GTKIFSVVGDVERPGNFEIPMGTPFATLLEMAGG---VKGGALKAVIPGGSSAPVLPARV 318 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M MDYD + + GS LG+ AVIVM+ +++++ RLS FY+HESCGQCTPCREGTGW Sbjct: 319 MMDLTMDYDAIAKAGSMLGSGAVIVMNDKRCMVRSLMRLSYFYQHESCGQCTPCREGTGW 378 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R++ER+ G + ++ LL V+ NI+GRTICALGDAAA P+QG++K+FR + Sbjct: 379 LWRLVERIETGKGRAEDLALLDSVADNIKGRTICALGDAAAMPVQGMLKHFRDEFAWHV- 437 Query: 418 QYHRC 422 ++ C Sbjct: 438 EHKTC 442 >gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 774 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 154/429 (35%), Positives = 243/429 (56%), Gaps = 8/429 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q +I N + + ++ G + V K+ D ++ EVK + LRGRGGA Sbjct: 130 FYSKQVKIALRNTGKVDPHDIHQYIAAGGFKAVKKMFSRMSPDDVLEEVKKANLRGRGGA 189 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW+ + P ++ N DE +PG DR IM +P +L+EG +I +++I A Sbjct: 190 GFPAGFKWAHTKRSGKGVPKLVIANGDEGDPGAFMDRSIMEGDPFSLLEGMLICAYSIDA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ ++L+ A+ + GLLG N G+D + + GAGA++CGE T+ Sbjct: 250 NFGFIYVRHEYPLAIKTLEKAIKQAEEMGLLGRNILGTGFDFSVFIKEGAGAFVCGEATS 309 Query: 178 LLESLEGKKGQPRLKPPFPANVG--LYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 L+ SLEG++G PR +PP + VG +G P+ +NN+E+ A VP I+ +GA W+ G G Sbjct: 310 LVASLEGQRGFPRARPPRLSEVGGGAWGYPSNLNNIETYACVPPIIEKGADWFLGIGTPG 369 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + GTK+FS++G VN VE M IT E++++ GGI A+ GG S C+P Sbjct: 370 SPGTKVFSLAGKVNNTGLVEVPMGITLREIVDEIGGGILNNRK-FKAIQTGGPSGGCIPE 428 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + +D+D L ++GS +G+ ++VMD S ++ F + ESCG+C PCR GT Sbjct: 429 QYL-DLPVDFDSLWQVGSMMGSGGMVVMDESDCMVDIAKFFLAFCQSESCGKCPPCRVGT 487 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 M+++MER+ G Q +I+ L ++ + + ++C LG +A P+ ++ FR EE Sbjct: 488 YQMLQIMERITSGEGQPGDIERLEKLIETVGEGSLCGLGRSAPNPVATTLRYFREEYEEH 547 Query: 416 I-DQYHRCN 423 I D+Y R N Sbjct: 548 IHDKYCRAN 556 >gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. 18P13] Length = 597 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 156/427 (36%), Positives = 236/427 (55%), Gaps = 7/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ N + + + + + R + + K+L E + +I + SGLRGRGG Sbjct: 109 FYKNQHRVALRNCGVINPECIDEYIGRDGYQALGKVLTEMTPEEVIQCILDSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG KW V + Y+ NADE +PG DR ++ +PH ++E IA +AIG Sbjct: 169 GFPTGRKWQLARNIVPNADQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIG 228 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ + L+ A+ + GLLG N + DI + GAGA++CGEET Sbjct: 229 ATQGYIYVRAEYPIAVQRLEIAIKQAREYGLLGKNIFGTDFSFDIGLRLGAGAFVCGEET 288 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ +GA W++ G E + Sbjct: 289 ALMTSIEGNRGEPRPRPPFPAEKGLFQKPTILNNVETYANIPQIILKGADWFASMGTEKS 348 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F++ G ++ VE M T +IE+ GGI G A GG S C+PA Sbjct: 349 KGTKVFALGGKIHNTGLVEVPMGTTLRTVIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAE 407 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 M +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 408 HM-DIAIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTK 466 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M +++++ KG A ++D L E+ +++ ++C LG A P+ ++ FR I Sbjct: 467 RMYEILDKITKGKATLEDLDKLEELCYHVKANSLCGLGQTAPNPVLSTLRYFRDEYIAHI 526 Query: 417 DQYHRCN 423 + RC Sbjct: 527 VE-KRCP 532 >gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 677 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +Q R+ N + + +++ ++R + + IL + R +I++V S LRGRGG Sbjct: 137 FFHNQQRVVLRNCGVINPEDINEYIARDGYAALADILNHRSRAEVIDQVINSVLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + P Y+V NADE +PG DR I+ +PH ++EG I ++A+GA Sbjct: 197 GFPTGKKWQIAARQE-VNPKYIVCNADEGDPGAFMDRSILEGDPHAILEGMSIGAYAVGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + GLLG N G++ DI + GAGA++CGEETA Sbjct: 256 EQGYIYVRAEYPIAVDRLEIAIGQARQMGLLGKNILGSGFNFDIDIKLGAGAFVCGEETA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S G +G+PR +PP+PA GL+G PT +NNVE+ A V + ++G W+ G G + Sbjct: 316 LLHSCMGARGEPRPRPPYPAQEGLWGKPTVINNVETFANVTVVFQKGWQWFVGRGTAKSS 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M T +I GGI AV GG S C+P Sbjct: 376 GTKVFSLAGKIKNTGLIEVPMGSTLRSIIFDTGGGIP-DGHRYKAVQTGGPSGGCIPEEY 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++DYD L ++GS +G+ +IVMD ++ F + ESCG+CTPCR GT Sbjct: 435 L-DILVDYDSLAKVGSIMGSGGLIVMDDRDCMVDIARFYVEFAQDESCGRCTPCRVGTKR 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ +++R+ KG + ++ LL E+S++I+ ++C LG A P+ ++ FR I Sbjct: 494 LLEILQRITKGEGEMEDLRLLEELSQDIKVASLCGLGQTAPNPVLSTLRFFRDEYIAHIR 553 Query: 418 QYHRCN 423 H C Sbjct: 554 DKH-CP 558 >gi|77993213|dbj|BAE46793.1| bidirectional hydrogenase F subunit [Nostoc sp. PCC 7422] Length = 541 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 146/426 (34%), Positives = 246/426 (57%), Gaps = 11/426 (2%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q + N + + + ++ + + +L ++ +++++ SGLRGRGGA Sbjct: 118 FFTKQLPIVLENSGKVDPERIESYIAADGYQALYHVLRDRTPTEVVDDITRSGLRGRGGA 177 Query: 59 GFSTGMKWSFMPKVCSD------RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 G+ TG+KW+ + K D +++ NADE +PG DR ++ +PH ++EG IA Sbjct: 178 GYPTGVKWATVAKAKGDAYGAHSERKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIA 237 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYI 171 ++++GA+ +IY+R E+ LQ A+ + GLLGSN +D I + GAGAY+ Sbjct: 238 AYSVGANQGYIYIRAEYPIAINRLQIAIRQAQRLGLLGSNIFDSPFDFKIDIRIGAGAYV 297 Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 CGEETAL+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A VP I+R+GA ++ Sbjct: 298 CGEETALMASIEGKRGTPHPRPPYPAESGLWGFPTLINNVETYANVPWIIRKGADVFASI 357 Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 G E ++GTK+F+++G + +E M T +++E+ GG+ G AV GG S Sbjct: 358 GTEKSKGTKVFALAGKIKNTGIIEVPMGTTLRQIVEEMGGGVPDGG-TAKAVQTGGPSGG 416 Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 C+PA + +DY+ L ++GS +G+ +IVMD S++++ F ESCG+C PC Sbjct: 417 CIPASA-FDSAVDYESLTQLGSMMGSGGMIVMDESSNMVDVARFFMEFCMDESCGKCIPC 475 Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411 R GT + +++ ++ +G A +++LL E+ ++ ++C LG +A P+ ++ FR Sbjct: 476 RVGTVQLYKLLTKISEGKASFADLELLEELCDMVKHTSLCGLGQSAPNPVFSTLRYFRDE 535 Query: 412 IEERID 417 I Sbjct: 536 YLTLIK 541 >gi|307110580|gb|EFN58816.1| hypothetical protein CHLNCDRAFT_56910 [Chlorella variabilis] Length = 949 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 266/441 (60%), Positives = 316/441 (71%), Gaps = 18/441 (4%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIFTNLYG L + RG W ++ KG +WII+EVKASG+RGRGGAGFS Sbjct: 482 LQDSDRIFTNLYGRHDPFLEGAQKRGDWYRTADLIGKGPEWIISEVKASGIRGRGGAGFS 541 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMPK DRPHYLVVN DE EPGT KDR+IMRH+PH L+EG ++A A A A Sbjct: 542 TGLKWSFMPKNF-DRPHYLVVNGDEGEPGTSKDREIMRHDPHKLLEGILLAGVATRAQAA 600 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ R SL+ A+ E Y +G LG N+ G D + GAGAY+CGEETALLE Sbjct: 601 YIYIRGEYRNYRHSLERAIGEAYQAGYLGKNACGSGMDFHVYTQQGAGAYVCGEETALLE 660 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPP+PAN GLYGCPTT+NNVE+IA +P ILRRG+SWYS GR NN GTK Sbjct: 661 SLEGKQGRPRLKPPYPANAGLYGCPTTINNVETIASIPAILRRGSSWYSSLGRRNNTGTK 720 Query: 241 LFSISGHVNYPCTV--------------EESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 LFSI C +E S ELIEKH GG+RGGWDNLLAVIPG Sbjct: 721 LFSIRHATASQCPRGCRPRQPPVHGGGGDEHTSQARQELIEKHAGGVRGGWDNLLAVIPG 780 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 GSSVP +P +MDYD L+E G+ GT AVIVMD+STDI++AI RLS FYKHESCG Sbjct: 781 GSSVPLVPQSVASEVLMDYDSLQEAGTYFGTGAVIVMDKSTDIVEAIRRLSWFYKHESCG 840 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 QCTPCREG+GW+ ++ R+ G A +EID+ +SK IEG TICALGDAAAWP+QGLI+ Sbjct: 841 QCTPCREGSGWLWDILTRIQTGEADVKEIDMAISISKIIEGHTICALGDAAAWPVQGLIR 900 Query: 407 NFRPLIEERIDQYH--RCNFQ 425 +FRPL+EERI + R N Q Sbjct: 901 HFRPLVEERIRERQAARANNQ 921 >gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 598 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + K+L E + +I+ VK SGLRGRGG Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D Y+V NADE +PG DR I+ +PH++IE IA +AIG+ Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + L+ A+++ GLLG N ++ DI + GAGA++CGEETA Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAINQAREYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ +G W++ G E ++ Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWSKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN +E M T E++E G G AV GG S C+PA Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G+ +G+ +IVMD T ++ F ESCG+C PCR GT Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G + +++ L E++ +I+ +C LG A P+ ++ FR E + Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + RC Sbjct: 528 E-KRCP 532 >gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus mobilis] Length = 609 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 230/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 T Q +I G + + D + G + ++K + E D +I EV SGLRGRGGA Sbjct: 123 FYTPQVKIALRHVGEIDPHQIDDYIDHGGYGALEKTVKEMTPDVVIEEVHRSGLRGRGGA 182 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + P Y+V N DE +PG DR IM +PH++IEG +I ++A+GA Sbjct: 183 GFPTGRKWKQCASYEN-SPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGA 241 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIY+R E+ E+++ A+++ G LG N + D+ + G GA++CGE TA Sbjct: 242 NEGFIYIRDEYALAVETIRKAIEQARERGYLGRNILGSSFSFDLSIVRGGGAFVCGESTA 301 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK G+PR K GL+G PT +NNVE+ A +P IL +G + G E + Sbjct: 302 LMASIEGKVGEPRAKYIRSVEKGLWGQPTVLNNVETWANIPVILTQGGDQFRQIGTEKST 361 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V VE M I ELI GGI GG AV GG S C+P Sbjct: 362 GTKVFSLVGKVKNTGLVEVPMGIRLRELIFDIGGGILGGRK-FKAVQTGGPSGGCIPEE- 419 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L E GS +G+ +IVMD T ++ F ESCG+C PCREG Sbjct: 420 LLDLPVDFDSLTEAGSMMGSGGMIVMDDRTCMVDVARYYVQFLADESCGKCVPCREGIRR 479 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++E + +G Q+ ++DLL + + + +C LG +A P+ I+ FR I Sbjct: 480 MAEILEDICEGRGQESDLDLLLNIGETMAEAALCGLGKSAPNPVSTTIRYFREEYLAHIQ 539 Query: 418 QYHRCN 423 + RC Sbjct: 540 E-RRCP 544 >gi|296127182|ref|YP_003634434.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563] gi|296018998|gb|ADG72235.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563] Length = 562 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 153/419 (36%), Positives = 240/419 (57%), Gaps = 6/419 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + + + K L E D ++ E++ SGLRGRGGA Sbjct: 138 FYQKQRRIVLKNCGMIDPENIDEYIGNDGYKALSKALFEMTPDEVLKEMQISGLRGRGGA 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KWSF V ++ Y+V NADE +PG DR I+ +PH++IE IA + +GA Sbjct: 198 GFPTWKKWSFTKGVEAE-QKYIVCNADEGDPGAYMDRSILEGDPHSVIEAMTIAGYTVGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++Y+R E+ + ++ A+++ Y GLLG N + D+ + GAGA++CGEETA Sbjct: 257 SKGYLYIRAEYGLAVDRVKIALEQAYNYGLLGQNILGSNFSFDLDIRLGAGAFVCGEETA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G PR +PPFPA GL+ PT +NNVE+ A V I+ G +W++ G EN++ Sbjct: 317 LLASIEGNRGTPRPRPPFPAIKGLFEYPTVINNVETFANVTAIINNGGNWFASIGTENSK 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G+VN VE M T E++ GGI + V GG S LP Sbjct: 377 GTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGGGIPND-KFVKGVQTGGPSGGILPES- 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + G +D+D L E+GS +G+ +IV+D ++++ F ESCG+C PCR G Sbjct: 435 LFGTHIDFDNLVELGSMMGSGGMIVIDEDSNMVDFAKFYLGFCVDESCGKCVPCRVGGMQ 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M++++E+ K A++ +I L +++ + ++CALG AA P+ +K+F I Sbjct: 495 MLKILEKFTKKRAKEDDIQKLKDIALTMRKASLCALGSTAANPVMSTLKHFEDEYRAGI 553 >gi|254491610|ref|ZP_05104789.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxidans DMS010] gi|224463088|gb|EEF79358.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxydans DMS010] Length = 425 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 204/415 (49%), Positives = 271/415 (65%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 F + Q +L G + ++ +L+ + I+ +VK S LRGRGGAGF TG+KW Sbjct: 8 FRTSHLEQSWTLDAYRQVGGYQVLENLLKNKMRPEEILEQVKNSALRGRGGAGFPTGLKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDRDI+R+ PH LIEG +IA + IGA + Y+R Sbjct: 68 SFMPRRMPG-EKYIVCNSDEGEPGTCKDRDILRYNPHQLIEGMIIAGYTIGAGTGYNYIR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF E +AA+ E +GLLG N + ++ H GAGAYICGEETALLESLEGK Sbjct: 127 GEFYEPIERFEAALKEAREAGLLGKNILGSDFHFELHTHIGAGAYICGEETALLESLEGK 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA GLYG PTT+NN E++A +P IL+ G W+ G +NN G+K+F ++ Sbjct: 187 KGQPRYKPPFPAGYGLYGRPTTINNTETLASIPVILQYGGDWFHEIGTQNNGGSKIFCMT 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHVN P E + F EL+E G ++L AVIPGG+S P +P +M M Y Sbjct: 247 GHVNKPGNYEVPLGTPFSELLELAGG--VRDGNSLKAVIPGGTSTPVVPGDKMLQLDMSY 304 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DG+ + GS LG +VI+MD T ++KA+ R++ FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 305 DGIGKGGSMLGAGSVIIMDEKTCMVKALKRIAYFYYEESCGQCTPCREGTGWLYRVIKRI 364 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +G ++ ++D L V++NI G TICALGDAAA P+ IK+FR + ID H Sbjct: 365 EEGQGKQEDLDRLVNVAENINGNTICALGDAAAAPVMSFIKHFRDEFQYHIDHGH 419 >gi|299066338|emb|CBJ37522.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CMR15] Length = 431 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 211/421 (50%), Positives = 275/421 (65%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + II +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Sbjct: 69 GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+GLLG N G++ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + F +L+E G G L AVIPGGSS P +PA M + Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ + Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|33597906|ref|NP_885549.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella parapertussis 12822] gi|33574335|emb|CAE38671.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella parapertussis] Length = 455 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 211/408 (51%), Positives = 263/408 (64%), Gaps = 7/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + + RG ++ + KIL + +I EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 46 WRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YLV N+DE EPGT KDRDI+R PH +IEG VIA++A+G + Y+ GE E Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMVIAAYAMGISVGYNYIHGEIFEVYER 164 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A++E A+G LG + + HG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 165 FEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTKLFSISG V P Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNY 284 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M F +L+E G G L AVIPGGSS P LPA M MDYD + + GS Sbjct: 285 EIPMGTPFSKLLELAGGM--RGGRKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSM 342 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPED 402 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +D+L V+ NI GRTICALGDAAA P++ IK+FR I ++ C Sbjct: 403 LDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449 >gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] Length = 599 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 234/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++++ + + + + K+L E +++ +K SGLRGRGG Sbjct: 112 FYNKQKRIALHNCGVIDPENINEYIGKDGYFALAKVLQEMTSQEVVDVIKESGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F D Y++ NADE +PG DR I+ PH++IE IA +AIGA Sbjct: 172 GFPTGVKWQFALDEPGD-EKYVICNADEGDPGAFMDRSILEGNPHSVIEAMAIAGYAIGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY+R E+ E L +A+ + GLLG N G+D D+ + GAGA++CGEETA Sbjct: 231 NHGYIYIRAEYPIAVERLTSAIKQARELGLLGKNIFDSGFDFDLEIRLGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EG++G P KPPFPA+ G++G PT +NNVE+ A + I++ GA W+ G E + Sbjct: 291 LIKSIEGERGMPNPKPPFPAHKGVWGKPTIINNVETYANIAQIIQHGAKWFRSIGTETSP 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + +E M T E+I + GG AV GG S CL Q Sbjct: 351 GTKVFALGGKIVNTGLIEVPMGTTLREVIYEIGGGCPNH-KRFKAVQTGGPSGGCLTEEQ 409 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +D L ++GS +G+ +IV+D ++ F ESCG+CTPCR GT Sbjct: 410 L-DTPIGFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKR 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ +G +D L ++ I+ +C LG A P+ I FR I Sbjct: 469 MLELLEQICEGKGTMATLDELEMLASTIQDTALCGLGQTAPNPVLSTIHQFRDEYIAHIV 528 Query: 418 QYHRCN 423 +C Sbjct: 529 D-KKCP 533 >gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] Length = 485 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 157/417 (37%), Positives = 235/417 (56%), Gaps = 5/417 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + +Q RI N + +++ D + + + K L R+ +I V S LRGRGG GF Sbjct: 1 MPEQVRIVLRNAGNIDPENIEDYLKNNGYLALAKALNSKREEVIQTVLDSNLRGRGGGGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F + D Y++ NADE +PG DR ++ +PH+++EG IA +AIGA Sbjct: 61 PTGLKWKFAMQAKGD-EKYVICNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAQK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 IY+R E+ L+ A+ + GLLG N + DI + GAGA++CGEETAL+ Sbjct: 120 GIIYIRAEYPLAVARLKVAISQAKDYGLLGENILGSNFSFDIEIRLGAGAFVCGEETALI 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+P KPPFPAN GL+ PT +NNVE++A + I+ GA W+ FG EN+ GT Sbjct: 180 HSIEGLRGEPTNKPPFPANSGLWKKPTVINNVETLANIAPIILNGADWFKQFGTENSPGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+++G V VE M T E+I GGI+G AV GG S C+PA + Sbjct: 240 KVFALAGDVKKVGLVEVPMGTTLREIIFDIGGGIKGD-KKFKAVQTGGPSGGCIPAEYL- 297 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD L+ +GS +G+ +IVMD T ++ F ESCG+CT CR G ++ Sbjct: 298 DTPIDYDSLQALGSMMGSGGMIVMDEDTCMVDVAKFYLQFTVDESCGKCTTCRVGNVRLL 357 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++E++ G AQ ++D + ++ ++ ++C LG A PI + F +E I Sbjct: 358 EILEKITSGNAQLEDLDHMLTLANVVKNGSLCGLGQTAPNPILSTYRYFEDEYKEHI 414 >gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 624 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 165/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ G + S+++ ++ G + ++K L + D IINE+ + LRGRGG Sbjct: 138 FYKKQTRLVLEHCGQIDSTSITEYLATGGYYALEKALFDMTGDEIINEITEANLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW+ + + + + Y+V N DE +PG DR IM +PH +IEG +IA A GA Sbjct: 198 GFPAGRKWAQVKRQNA-KQKYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMIIAGIACGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+++ GLLG N + +I ++ GAGA++CGE +A Sbjct: 257 SEGYIYVRAEYPLAVSRLKRAIEQAKEFGLLGENILGSNFSFNIHINRGAGAFVCGEGSA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I++ GA WY G E + Sbjct: 317 LTASIEGKRGMPRVKPPRTVEQGLFDMPTVLNNVETFANVPLIIKNGADWYKSIGTEKSP 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G++ +E M T E+I GG+R G D AV GG S CL Sbjct: 377 GTKAFALTGNIENTGLIEIPMGTTLREVIFDIGGGMRNGAD-FKAVQIGGPSGGCLSEKD 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+ G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT Sbjct: 436 L-DLPLDFDSLKKAGAMIGSGGLVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V+G Q +I+LL E++ I +C LG AAA+P+ IKNFR E I Sbjct: 495 MLEILERIVEGNGQDGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHIY 554 Query: 418 QYHRCN 423 RC Sbjct: 555 D-KRCP 559 >gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909] gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1] gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909] gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1] Length = 606 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + +++ + ++ + + K L E + +I EVK SGLRGRGG Sbjct: 111 FYAKQTRVALRNCGNINPENIDEYIAHDGYRALGKALTEMTPEQVIEEVKKSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF+TG+KW F K SD Y+ NADE +PG DR I+ +PH+++E +A +AIGA Sbjct: 171 GFTTGLKWEFTYKSKSD-KKYVACNADEGDPGAFMDRSILEGDPHSVLEAMALAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L A+++ GLLG ++ DI + GAGA++CGEETA Sbjct: 230 DTGYIYVRAEYPIAVKRLSIAIEQAREYGLLGHGIFGTDFNFDIELRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G PR +PPFPA G++G PT +NNVE+ A VP I+ +G W++ G E ++ Sbjct: 290 LIESIEGKRGMPRPRPPFPAVKGVWGKPTLLNNVETYANVPLIILKGGEWFARIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE M T E+I GGI A GG S CL Sbjct: 350 GTKVFALGGKINNTGLVEIPMGTTLKEVIYGIGGGIP-NGKKFKAAQTGGPSGGCLTEE- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L ++GS +G+ +I+MD ++ F ESCG+CTPCREGT Sbjct: 408 LLDTEIDFDNLVKLGSMMGSGGMIIMDEDNCMVDIARFYLDFTCDESCGKCTPCREGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 MM ++ R+ +G + ++D L +++ I+ ++C LG A P+ + +F+ + Sbjct: 468 MMEILNRITEGKGELSDLDELEHLAEYIKSSSLCGLGQTAPNPVLSTLSHFKDEYLAHVV 527 Query: 418 QYHRCN 423 RC Sbjct: 528 D-KRCP 532 >gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] Length = 620 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 154/419 (36%), Positives = 246/419 (58%), Gaps = 6/419 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 + Q RI + ++++ ++ G + + + LE + II EVK SGLRGRGGAG Sbjct: 127 FMEKQSRRILRRGGLIDPENINHYLATGGYRGLLRALEMKPEDIIEEVKDSGLRGRGGAG 186 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +KWS + SD YLV NADE +PG +R ++ +PH+L+EG +IAS+A+GA Sbjct: 187 FPTWLKWSLCRQEESD-VKYLVCNADEGDPGAFMNRSLIEGDPHSLLEGILIASYAVGAE 245 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY R E+ E L+ A+ + GLLG + G+ +DI + GAGA++CGEETAL Sbjct: 246 EAYIYCRAEYPLALERLRTAISDLRDLGLLGEDILDSGFSLDIRIKEGAGAFVCGEETAL 305 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR +PPFP GL+G PT +NNVE++A V I++ G +++ G E + G Sbjct: 306 IASIEGKRGMPRTRPPFPTTSGLWGKPTVINNVETLAAVSMIMQHGPEYFNTPGTEGSPG 365 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK FS+ G V +E + + E+I GG+R G L AV GG S CLPA + Sbjct: 366 TKTFSLVGDVRRTGLIEVPLGTSLREVIHDIGGGVRDG--ELKAVQIGGPSGGCLPAE-L 422 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L G+ +G+ ++V+ T +++ F + ESCG+C PCR GT M Sbjct: 423 VDTGIDYDSLTSAGAIMGSGGLVVLSDHTCMVELARYFLEFTQRESCGKCVPCRVGTRQM 482 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ +V+G ++ ++++L ++++ + ++C LG + P+ ++ F + I+ Sbjct: 483 LMILNDIVEGSGREEDLEILRDIAETVRAASLCGLGQTSPNPVLTTLRYFEREYRDHIN 541 >gi|325983284|ref|YP_004295686.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212] gi|325532803|gb|ADZ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212] Length = 425 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 204/408 (50%), Positives = 267/408 (65%), Gaps = 7/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L R + + KIL K + +I EVK S LRGRGGAGF TG+KWSFMPK Sbjct: 20 WRLRSYEKREGYAALKKILIKKIAPEEVIEEVKKSALRGRGGAGFPTGLKWSFMPKGYEG 79 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V N+DE EPGT KDRDI+R+ PH LIEG +IA++A+G + Y+ GE E Sbjct: 80 -DKYIVCNSDEGEPGTFKDRDILRYNPHILIEGMIIAAYAMGVKAGYNYIHGEIWETYER 138 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ AV+E ++G LG+N + + HHG GAYICGEETALLES+EGKKGQPR KPP Sbjct: 139 MEDAVEEARSAGYLGNNILGSTFSFQLYNHHGYGAYICGEETALLESIEGKKGQPRFKPP 198 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPAN GLYG PTT+NN E+ A VP I+R Y G+ NN GTK+FS+SGHVN P Sbjct: 199 FPANYGLYGKPTTINNTETFASVPWIIRNSGEKYLQLGKPNNGGTKIFSVSGHVNKPGNY 258 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + +F +L+E G G L IPGGSS+P LP M MDYD + + GS Sbjct: 259 EIPLGTSFAKLLELAGGM--RGGRKLKGCIPGGSSMPVLPGDIMMQTDMDYDSIAKAGSM 316 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVI+MD +T +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 317 LGSGAVIIMDETTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIVNRIEHGKGRSED 376 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +DLL ++ NI+GRTICALGDAAA P++ ++++FR I ++ +C Sbjct: 377 LDLLDNIADNIQGRTICALGDAAAMPVRAMLQHFRDEFAYHI-EHKKC 423 >gi|114321114|ref|YP_742797.1| NADH-quinone oxidoreductase, F subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227508|gb|ABI57307.1| NADH dehydrogenase subunit F [Alkalilimnicola ehrlichii MLHE-1] Length = 425 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 214/416 (51%), Positives = 275/416 (66%), Gaps = 7/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 T L SL + G + +KIL++ ++ II VK + LRGRGGAGF G+KW Sbjct: 7 LTTLDKETPWSLETYRAMGGYQAWEKILKEKTPQEEIIETVKKANLRGRGGAGFPAGVKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 FMP+ Y+V N+DESEPGTCKDRDI+R PH L+EG IA +A+GA + Y+R Sbjct: 67 GFMPRNAPG-QKYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIAGYAMGATVGYNYLR 125 Query: 127 GEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GEF E E ++ AV E +GLLG N G D ++ H GAGAYICGEE+AL+ESLEG Sbjct: 126 GEFHHEPFERIEQAVREAREAGLLGRNIQGSGIDFELHNHIGAGAYICGEESALMESLEG 185 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA VG+YG PTT+NN E++A VP+I+R+G+ W+ G+ NN G K+F + Sbjct: 186 KKGQPRYKPPFPAQVGVYGRPTTINNTETLASVPSIMRKGSEWFLELGKPNNGGEKIFCV 245 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHV P E + F +L+E G G L AVIPGGSS+P +P M A MD Sbjct: 246 SGHVERPGNFEVPLGTPFKDLLEMAGG--VRGGRKLKAVIPGGSSMPVVPGETMLQATMD 303 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YDGL E+GS LG+ VIVMD +TD++KAI R+S FY ESCGQCTPCREGTGWM RV+ R Sbjct: 304 YDGLAEIGSALGSGGVIVMDETTDMVKAILRISRFYFAESCGQCTPCREGTGWMQRVLRR 363 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +V+G + +I+LL + I G TICA G+AAAWP+Q +K+FR E ++ Sbjct: 364 IVEGKGRHEDIELLEAAAGQIAGHTICAFGEAAAWPVQSFLKHFRHEFEYYVEHKR 419 >gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1] gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1] Length = 597 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 153/426 (35%), Positives = 235/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + +++ + + K+L E +++E+K SGLRGRGG Sbjct: 110 FYEKQKRIALHNCGVIDPENIQEYIAKDGYFALGKVLTEMKPQEVVDEIKESGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F D Y++ NADE +PG DR I+ PH++IE IA +AIGA Sbjct: 170 GFPTGLKWQFALNEPGD-EKYVICNADEGDPGAFMDRSILEGNPHSVIEAMEIAGYAIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IY+R E+ E L+ A+ E GLLG++ G+ D+ + GAGA++CGEETA Sbjct: 229 HHGYIYIRAEYPIAVERLKHAIQEAKELGLLGNDIFGSGFHFDLEIRLGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EG++G P KPPFPA+ G++G PT +NNVE+ A + I+ GA W+ G E + Sbjct: 289 LIQSIEGERGMPSPKPPFPAHKGVWGKPTIINNVETYANIAQIITHGAKWFRSIGTETSA 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + VE M T E+I + GG + AV GG S CL Q Sbjct: 349 GTKVFALGGKIVNTGLVEVPMGTTLREVIYEIGGGCP-NRKSFKAVQTGGPSGGCLTESQ 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +D L ++GS +G+ +IV+D ++ F ESCG+C+PCR GT Sbjct: 408 L-DTPIGFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCSPCRIGTKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E + +G +D L ++ I+ +C LG +A P+ I FR I Sbjct: 467 MLELLEDICEGRGTMETLDELEVLATTIKDTALCGLGQSAPNPVLSTILQFREEYIAHII 526 Query: 418 QYHRCN 423 +C Sbjct: 527 D-KKCP 531 >gi|255067286|ref|ZP_05319141.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256] gi|255048437|gb|EET43901.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256] Length = 431 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + +IL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYSALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ A VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 605 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 T Q ++ N+ + ++ D ++R + + K+L+ + +I+EV+ SGLRGRGGA Sbjct: 119 FYTKQLKVALRNIGEIDPANIQDYIARDGYQALAKVLKSMSPEQVIDEVQRSGLRGRGGA 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW ++ P Y+V N DE +PG DR IM +PH++IEG +I ++A+GA Sbjct: 179 GFPTGLKWKACASQAAE-PRYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ +L A+++ SG LG N G+ DI + G GA++CGEETA Sbjct: 238 AAGFIYVRDEYDLAVVNLGRAIEDARRSGYLGDNILGSGFSFDIEIVRGGGAFVCGEETA 297 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG G+PR K +P GL+G PT +NNVES A VP I+ RGA ++ G ++ Sbjct: 298 LLASIEGNVGEPRDKYVYPTEKGLWGQPTVINNVESWANVPVIINRGADEWARVGTATSK 357 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V VE M T E+I GGI G AV GG S C+PA Sbjct: 358 GTKVFSLVGKVYNTGLVEVPMGTTLREIIFDIGGGIPNG-RQFKAVQTGGPSGGCIPAS- 415 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +GS +G+ +IVMD T +++ F ESCG+C PCREG Sbjct: 416 LIDLPVDFDSLTSVGSMMGSGGMIVMDDRTCMVEVARYYLNFLAGESCGKCVPCREGIRR 475 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ ++++L + + ++ ++C LG A P+ ++ FR I Sbjct: 476 MLEILTRICNAQGHPEDLEILSSLGETLQVASLCGLGKTAPNPVLSTLRYFRDEYVAHIV 535 Query: 418 QYHRCN 423 + RC Sbjct: 536 E-KRCP 540 >gi|261378535|ref|ZP_05983108.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685] gi|269145085|gb|EEZ71503.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685] Length = 431 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL + + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|33592012|ref|NP_879656.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis Tohama I] gi|33602811|ref|NP_890371.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella bronchiseptica RB50] gi|33571656|emb|CAE41149.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis Tohama I] gi|33577253|emb|CAE35810.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella bronchiseptica RB50] gi|332381428|gb|AEE66275.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis CS] Length = 455 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 210/408 (51%), Positives = 262/408 (64%), Gaps = 7/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + + RG ++ + KIL + +I EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 46 WRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ GE E Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYER 164 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A++E A+G LG + + HG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 165 FEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTKLFSISG V P Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNY 284 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M F +L+E G G L AVIPGGSS P LPA M MDYD + + GS Sbjct: 285 EIPMGTPFSKLLELAGGM--RGGRKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSM 342 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPED 402 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +D+L V+ NI GRTICALGDAAA P++ IK+FR I ++ C Sbjct: 403 LDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449 >gi|225077023|ref|ZP_03720222.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens NRL30031/H210] gi|224951580|gb|EEG32789.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens NRL30031/H210] Length = 431 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQVFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|241760593|ref|ZP_04758685.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114] gi|261379575|ref|ZP_05984148.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703] gi|241318774|gb|EER55300.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114] gi|284798049|gb|EFC53396.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703] Length = 431 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|291296251|ref|YP_003507649.1| NADH-quinone oxidoreductase F subunit [Meiothermus ruber DSM 1279] gi|290471210|gb|ADD28629.1| NADH-quinone oxidoreductase, F subunit [Meiothermus ruber DSM 1279] Length = 438 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 198/414 (47%), Positives = 270/414 (65%), Gaps = 7/414 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 ++ ++ +LS ++ G + + K + +G+DW+I EVK SGLRGRGGAGF TG+KWS Sbjct: 17 LYKHVGQPNSWTLSYYLAHGGYQAIRKAIAQGQDWVIEEVKKSGLRGRGGAGFPTGLKWS 76 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 FMP+ + HY+V NADESEPG+ KDR +M +PH LIEG +IA AI A +IY+RG Sbjct: 77 FMPRNT-GKQHYIVCNADESEPGSFKDRYLMEDDPHQLIEGMMIAGVAIQASKGYIYIRG 135 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R + L AA+ E YA+G LG N G+ D+ VH GAGAYICGEETAL+ SLEG + Sbjct: 136 EYRRAYDRLIAAIREAYAAGYLGQNVMGTGFSFDLYVHRGAGAYICGEETALMNSLEGLR 195 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 PR+KPPFPA GL+G PTT+NNVES+ V I+ RGA W++ G E ++G KLF +SG Sbjct: 196 ANPRMKPPFPAQAGLWGMPTTINNVESLCSVVHIIERGADWFASMGTEKSKGHKLFQVSG 255 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDY 305 P E + TF EL+ GG + + A+IPGGSS P LP ++ MDY Sbjct: 256 PFKRPGVYELPLGTTFRELLFDWAGGPT---EPIQAIIPGGSSCPPLPWNDEILDTPMDY 312 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMER 364 + + GS LGT VI + S ++ A+W ++ FY HESCG+CTPCREG GWM+ + E+ Sbjct: 313 ESISAKGSLLGTGGVIGIPASMSMVDAMWNITRFYGHESCGKCTPCREGVSGWMVSLFEK 372 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + G QK +++LL + IEGR+ CAL DAA WP++G +K+FR E ++Q Sbjct: 373 IGTGQGQKGDVELLESMLDQIEGRSFCALADAACWPVRGSLKHFRHQFVEAVEQ 426 >gi|91789111|ref|YP_550063.1| NADH-quinone oxidoreductase subunit F [Polaromonas sp. JS666] gi|91698336|gb|ABE45165.1| NADH dehydrogenase subunit F [Polaromonas sp. JS666] Length = 467 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 216/419 (51%), Positives = 270/419 (64%), Gaps = 11/419 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I +L G L D +RG + + KIL K D +I EVKAS LRGRGGAGF Sbjct: 37 ILADLDGSN-WRLKDYEARGGYQALRKILGKDGGEGLTPDQVIAEVKASSLRGRGGAGFP 95 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ YLV N+DE EPGTCKDRDIM++ PH++IEG IA++A+G Sbjct: 96 TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISIG 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + A+DE A+GL+G + + HG GAYICGEETALLE Sbjct: 155 YNYIHGEIFATYRRFEEALDEARAAGLIGEKILGSSFTFQLHASHGFGAYICGEETALLE 214 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 215 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 274 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++S+SG V P E M F L+E G L AVIPGGSS P LPA M Sbjct: 275 IYSVSGDVELPGNYEVPMGTPFARLLELAGG--VRKGRTLKAVIPGGSSAPVLPASIMMD 332 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 333 CTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWR 392 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V++R+ G ++ ++DLL V+ NI+GRTICALGDAAA P++ +IK+FR E I Q Sbjct: 393 VVDRIHNGHGKQTDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEAMIPQK 451 >gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] Length = 631 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 238/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K+L E D +I + SGLRGRGG Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTLDELIKLITDSGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KWSF SD Y++ NADE +PG DR I+ +PH++IE IA +AIGA Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ L+ A+D+ GLLG N G++ +I + +GAGA++CGEETA Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+ PT VNNVE++A +P I+ GA WY G E + Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINGGADWYKSIGTEKSN 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I GGI+ AV GG S C+PA Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ + ++ G + +++ L E+S I+ ++C LG A P+ ++ F E ++ Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562 Query: 418 QYHRCN 423 + RC Sbjct: 563 E-KRCP 567 >gi|241663479|ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12D] gi|309781857|ref|ZP_07676590.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] gi|240865506|gb|ACS63167.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12D] gi|308919498|gb|EFP65162.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA] Length = 431 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + +I +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Sbjct: 69 GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+G LG N G++ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + F +L+E G G L AVIPGGSS P +PA M + Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRV 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ + Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] Length = 601 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 229/426 (53%), Gaps = 8/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q++I N+ + + D + RG + + K++ + + ++ EV SGLRGRGGA Sbjct: 114 FCKRQNKIALRNVGEIDPTVIEDYIERGGYKALKKVISQMKPEDVLKEVGDSGLRGRGGA 173 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW ++ + P Y+V N DE +PG DR IM +PH++IEG I ++A+G Sbjct: 174 GFPTSRKWQTAAEIDT-TPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMTICAYAVGG 232 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F Y+R E+ E++Q A++ G LG N + DI + G GA++CGE TA Sbjct: 233 TLGFAYIRDEYGLAVENMQKAINVARERGFLGENILGTNFSFDIQIVRGGGAFVCGESTA 292 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENN 236 L+ S+EG G+PR K GL+G PT +NNVE+ A +P IL +G WY G E + Sbjct: 293 LMSSIEGMVGEPRAKYIHTTEKGLWGQPTVLNNVETWANIPIILDKGGQWYHSIGTMEKS 352 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+FS+ G V VE M T E+I GG+ AV GG S CLP Sbjct: 353 KGTKVFSLVGKVKNTGLVEVPMGTTLREIIFNIGGGVLNDRK-FKAVQIGGPSGGCLPEE 411 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DYD L + S +G+ +IVMD T I+ F ESCG+C PCREG Sbjct: 412 YL-DLPVDYDTLTKADSMMGSGGMIVMDDRTCIVDVTRYYLGFLAEESCGKCVPCREGVK 470 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ +M + G ++ +++ L E++ + +C+LG +AA P+ I+ FR EE I Sbjct: 471 RMLEIMTDICNGEGREGDLEELLEIASMSKEAALCSLGKSAANPVLASIRYFRDEFEEHI 530 Query: 417 DQYHRC 422 + RC Sbjct: 531 -RNKRC 535 >gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] Length = 628 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 140/427 (32%), Positives = 237/427 (55%), Gaps = 7/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + + +S+ ++ + + K LE +I+E+K SGLRGRGGA Sbjct: 141 FYKKQLRVALRNCGHINPEDISEYIANDGYLALAKCLEEMTPQGVIDEMKKSGLRGRGGA 200 Query: 59 GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW+ + + Y+V NADE +PG DR ++ +PH+++E IA +A Sbjct: 201 GFPTGLKWAAAAENPRLNGHKYIVCNADEGDPGAFMDRSLLEGDPHSVLEAMAIAGYATD 260 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 + +IY+R E+ E L+ A+ + +G+LG N G++ I + +GAGA++CGE T Sbjct: 261 SDMGYIYIRAEYPLAIERLKIAIAQAEEAGVLGENILGTGFNFKIELKYGAGAFVCGEGT 320 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL++S+EG +G+P + FP GL+ PTTVNNVE+ +P I+ +GA W++ FG E++ Sbjct: 321 ALIKSIEGNRGEPIVNKYFPTEHGLWQAPTTVNNVETFGNIPAIINKGADWFASFGTEDS 380 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F++ G VN VE M T E++ + GGI GG + AV GG S C+ + Sbjct: 381 KGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPGGKE-FKAVQTGGPSGGCISSK 439 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+ L +GS +G+ ++V+D + ++ F ESCG+CTPCR G Sbjct: 440 DL-DTPIDFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFTVDESCGKCTPCRIGNR 498 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++ ++ +G + ++ L ++ I+ ++C LG A P+ + F + Sbjct: 499 RLLEILNKICRGNGTEEDLVNLKSLATIIKNTSLCGLGKCAPNPVLSTLNCFYDEYLAHV 558 Query: 417 DQYHRCN 423 +C Sbjct: 559 KD-KKCP 564 >gi|296313741|ref|ZP_06863682.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768] gi|296839664|gb|EFH23602.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQIDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL + + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|17546776|ref|NP_520178.1| NADH dehydrogenase I chain F [Ralstonia solanacearum GMI1000] gi|17429076|emb|CAD15764.1| probable nadh dehydrogenaseI(chain f) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 211/421 (50%), Positives = 275/421 (65%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + II +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Sbjct: 69 GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+GLLG N G++ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKLFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + F +L+E G G L AVIPGGSS P +PA M + Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ + Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|325130975|gb|EGC53702.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis OX99.30304] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 262/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + ++G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKVG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|261391778|emb|CAX49233.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F; NDH-1, chain F) [Neisseria meningitidis 8013] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|83746302|ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] gi|207723878|ref|YP_002254276.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2] gi|207742740|ref|YP_002259132.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] gi|83727052|gb|EAP74177.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551] gi|206589083|emb|CAQ36045.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2] gi|206594134|emb|CAQ61061.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum IPO1609] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + +I +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Sbjct: 69 GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+G LG N G++ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + F +L+E G G L AVIPGGSS P +PA M + Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ + Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|218441075|ref|YP_002379404.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424] gi|218173803|gb|ACK72536.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424] Length = 530 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 153/417 (36%), Positives = 249/417 (59%), Gaps = 7/417 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI G + + + ++ G + ++ K L E +I+E++ SGLRGRGG Sbjct: 112 FFSRQVRIVREHTGKVDPERIESYIAVGGYQSLYKALYEMSSPEVISEIQKSGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ + Y++ N DE +PG DR I+ +PH ++EG IA++A+GA Sbjct: 172 GYPTGLKWATVAKMP-GKQKYVICNGDEGDPGAFMDRSILESDPHLVLEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + G+LGS + +D I + GAGA++CGEETA Sbjct: 231 DHGYIYVRAEYPLAIKRLEKAIAQAKKYGILGSQIFESPFDFKIDIRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PP+PA VGL+GCPT +NNVE+ A + I+R+G WYS G E ++ Sbjct: 291 LIHSIEGQRGNPRTRPPYPAEVGLWGCPTLINNVETYANIAAIIRKGGDWYSSIGTETSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT E++E+ GG+ G + AV GG S C+PA Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPAD- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++GS +G+ ++VMD+ T +++ F + ESCG+C PCR GT Sbjct: 408 LLDTPVDYNSLTKLGSMMGSGGMVVMDKETSMVEVAKFYMEFCQEESCGKCVPCRAGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M ++++LV A +I+ L + ++ ++C LG +A P+ + FR E Sbjct: 468 MYELLKKLVNRQATPADIEKLEALCLAVKETSLCGLGQSAPNPVLSTLHYFREEYEA 524 >gi|187929288|ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12J] gi|187726178|gb|ACD27343.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12J] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + +I +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Sbjct: 69 GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+G LG N G++ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + F +L+E G G L AVIPGGSS P +PA M + Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ + Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7] gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7] Length = 599 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 235/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++++ + + + + K++ E +++ +KASGLRGRGG Sbjct: 112 FYNKQKRIALHNCGVIDPENINEYIGKDGYFALAKVVSEMTPQEVVDVIKASGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW F + Y++ NADE +PG DR I+ PH++IE IA++AIGA Sbjct: 172 GFPAGVKWQFAL-NEPGKEKYVICNADEGDPGAFMDRSILEGNPHSVIEAMAIAAYAIGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY+R E+ E L A+++ GL+G N + G+D D+ + GAGA++CGEETA Sbjct: 231 NHGYIYIRAEYPIAVERLNTALEQARELGLIGKNIFESGFDFDLELRLGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EG++G P KPPFPA+ G++G PT +NNVE+ A + I++ GA W+ G E + Sbjct: 291 LIQSIEGERGMPNPKPPFPAHKGVWGKPTIINNVETYANIAQIIQHGAEWFRSIGTETSP 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G + VE M T E+I + GG AV GG S CL Q Sbjct: 351 GTKVFALGGKIVNTGLVEVPMGTTLREVIYEIGGGCPNH-KRFKAVQTGGPSGGCLTEEQ 409 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +D L ++GS +G+ +IV+D ++ F ESCG+CTPCR GT Sbjct: 410 L-DTPIGFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKR 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ G +D L ++ I+ +C LG A P+ I FR I Sbjct: 469 MLELLEQICDGKGTMETLDELELLASTIQDTALCGLGQTAPNPVLSTIHQFRDEYIAHIV 528 Query: 418 QYHRCN 423 +C Sbjct: 529 D-KKCP 533 >gi|313669280|ref|YP_004049564.1| NADH dehydrogenase I chain F [Neisseria lactamica ST-640] gi|313006742|emb|CBN88212.1| NADH dehydrogenase I chain F [Neisseria lactamica 020-06] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + ++A+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFESALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|300703647|ref|YP_003745249.1| NADH-quinone oxidoreductase subunit f [Ralstonia solanacearum CFBP2957] gi|299071310|emb|CBJ42628.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CFBP2957] Length = 431 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 208/421 (49%), Positives = 273/421 (64%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + +I +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I +A+G + Sbjct: 69 GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+G LG N G++ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGTGFNFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + F +L+E G L AVIPGGSS P +PA M + Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RDGKKLKAVIPGGSSAPVVPADLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ + Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] Length = 596 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + R + + K L E + +I+E+K SGLRGRGG Sbjct: 110 FYKKQLRIALRNCGFIDPENIEECIGRDGYSALAKCLTEMTPEAVIDEIKRSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K +D Y+V NADE +PG DR IM +PH++IE I ++IGA Sbjct: 170 GFPTGLKWEFARKYQAD-QKYVVCNADEGDPGAFMDRSIMEGDPHSVIEAMAICGYSIGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E L+ A+++ GLLG N + I + +GAGA++CGEETA Sbjct: 229 SKGLVYIRAEYPLAIERLRIAIEQAEKYGLLGENILGTDFSFHIEIRYGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P KPPFPA G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 289 LIHSMEGHRGEPTTKPPFPAESGYLNKPTNVNNVETLANIPVILNKGADWFASIGTERSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + GGI+ G AV GG S CL Sbjct: 349 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGGGIKNG-KKFKAVQTGGPSGGCLTEKH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+C+PCR G Sbjct: 408 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVAVAKFYLEFIVEESCGKCSPCRIGNKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ +G ++D L +S+ I+ +C LG + P+ +++F I Sbjct: 467 LLEILTRITEGKGTMEDLDNLRNLSQVIKDTALCGLGQTSPNPVLSTLEHFYDEYVAHIR 526 Query: 418 QYHRCN 423 H+C Sbjct: 527 D-HKCP 531 >gi|254674109|emb|CBA09893.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria meningitidis alpha275] Length = 433 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 199/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA + MDYD + + G Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIIMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL + + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|312796896|ref|YP_004029818.1| NADH-quinone oxidoreductase chain F [Burkholderia rhizoxinica HKI 454] gi|312168671|emb|CBW75674.1| NADH-quinone oxidoreductase chain F (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 441 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 207/416 (49%), Positives = 271/416 (65%), Gaps = 9/416 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLQDYVARGGYQQLRRILEQKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E + A+DE A+G LG N G+ ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYERFEQALDEARAAGYLGHNILGSGFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G +G PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASYGAFGKPTTINNTETFAAVPFLLAIGPQQYLELGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG VN P E + F +L+E G + AVIPGGSS P +P QM +D Sbjct: 251 SGDVNLPGNYEVPLGTPFAKLMELAGG----VRGQIKAVIPGGSSAPVVPGEQMMQTDLD 306 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVM+ + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 307 YDSIAKAGSMLGSGAVIVMNDTRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 366 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K+F E ++ H Sbjct: 367 IEHGQGRQEDLDLLNSVAQNIMGRTICALGDAAAMPVRGMLKHFWNEFEYHVEHKH 422 >gi|309379798|emb|CBX21574.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 431 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + +P I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSIPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] Length = 597 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 156/423 (36%), Positives = 242/423 (57%), Gaps = 7/423 (1%) Query: 4 DQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 Q RI N + ++ + + R ++ + K L E R+ +I EVK SGLRGRGG GF Sbjct: 114 KQHRIALENCGYINPDNIEEYIVRHGYEALGKALTEMTREQVIEEVKTSGLRGRGGGGFP 173 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF + D Y++ NADE +PG DR I+ +PH +IEG +I ++AIGA Sbjct: 174 TGLKWSFCARAQGD-KKYVICNADEGDPGAFMDRSILEGDPHCVIEGMMIGAYAIGADEG 232 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY R E+ + L+ A+++ A GLLG N + + + GAGA++CGEETAL+ Sbjct: 233 YIYCRAEYPLAIQRLKTAIEKAEAYGLLGKNIMGTDFSFIVHIKEGAGAFVCGEETALMA 292 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G PR +PPFPAN GL+ P+ +NNVE+ A +P I+ G Y+ G E ++GTK Sbjct: 293 SIEGQRGMPRPRPPFPANKGLWDKPSNINNVETWANIPYIILHGGDHYASMGTEKSKGTK 352 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G V + VE M IT E+I GGI AV GG S CL + Sbjct: 353 VFALTGKVKHTGLVEVPMGITLREIIFDIGGGILND-KKFKAVQIGGPSGGCLTEEHL-D 410 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + Y+ L E+G+ +G+ ++VMD ++ F + ESCG+CTPCREGT M+ Sbjct: 411 LPVSYESLAEVGAIMGSGGMVVMDEENCMVDVAKFFLEFTQRESCGKCTPCREGTKQMLL 470 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ ++ +G ++D L++++ ++ ++C LG A PI ++ FR + Sbjct: 471 LLNKISEGKGTMEDLDTLHDLAVMVKEMSLCGLGQTAPNPILTTLRYFRDEYVAHVKD-K 529 Query: 421 RCN 423 +C Sbjct: 530 KCP 532 >gi|34496401|ref|NP_900616.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum ATCC 12472] gi|34102254|gb|AAQ58620.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum ATCC 12472] Length = 431 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 206/408 (50%), Positives = 266/408 (65%), Gaps = 6/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L ++RG + + +IL + ++ +I EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWRLDAYVARGGYQALRRILDSKMTQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+R+ PH+LIEG +IA +A+G + Y+ GE + Sbjct: 79 PG-DKYVVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIAGYAMGTKAGYNYIHGEIFEDY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + A++E +G LG N G++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 LLFEEALEEARKAGFLGQNILGSGFNFELYAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN ES A VP I+R GA + G+ NN GTKLFS+SGHVN P Sbjct: 198 PPFPASFGLYGKPTTINNTESFASVPFIIRDGAQTFLEKGKPNNGGTKLFSVSGHVNRPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E ++ F EL+E G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEIALGTPFSELLEMAGGM--RDGKKLKAVIPGGSSAPVLPADIMMQCTMDYDSIAKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVIVM+ ++KA+ RL+ FY ESCGQCTPCREGTGW+ +V+ R+ G +K Sbjct: 316 SMLGSGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYKVIHRIASGQGRK 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++LL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 376 GDLELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYAIEHGK 423 >gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 527 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 154/425 (36%), Positives = 234/425 (55%), Gaps = 7/425 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAG 59 Q RI N + + + D ++ G + ++ K+L++ + + E+K S LRGRGGAG Sbjct: 43 FEKQTRIALKNYDIINPEKIEDYIAFGGYYSLAKVLQENDKTKVCEEIKKSNLRGRGGAG 102 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW K +D Y++ NADE +PG DR I+ +PH+++EG IA F GA Sbjct: 103 FPTGKKWEAAMKQNTD-QKYIICNADEGDPGAYMDRSILEGDPHSVLEGMAIAGFVTGAD 161 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 FIYVR E+ + +L A+ + + LLG N G++ ++ + GAGA++CGE TAL Sbjct: 162 SGFIYVRAEYPKAVATLITAIYQAKDNNLLGDNILGSGFNFNVELRLGAGAFVCGEGTAL 221 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ES+EGK+G PR K GL+G PT +NNVE+ A V I+ +GA W+ G E + G Sbjct: 222 MESIEGKRGMPRNKEFRTTVKGLWGKPTVINNVETYANVAQIIEKGADWFKSIGTEKSSG 281 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F++ G +N P VE M +++ G G AV GG S C+P + Sbjct: 282 TKVFALVGKINNPGLVEVPMGTKISDVVFDIGG-GIPGGKKAKAVQTGGPSGGCIPTD-L 339 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D++ LKE+GS +G+ ++VMD ++ F ESCG+CTPCR G + Sbjct: 340 FDTGLDFESLKEIGSIMGSGGMVVMDEDDCMVDISRFFLEFSVDESCGKCTPCRIGNKRL 399 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++++ V G A +ID L E+S I ++C LG A+ PI +K FR + + Sbjct: 400 LEMLDKFVSGNAVMSDIDKLEELSNMICDTSLCGLGQASPNPILSTLKYFRQEYIDH-AK 458 Query: 419 YHRCN 423 RC Sbjct: 459 DKRCT 463 >gi|256821520|ref|YP_003145483.1| NADH-quinone oxidoreductase subunit F [Kangiella koreensis DSM 16069] gi|256795059|gb|ACV25715.1| NADH-quinone oxidoreductase, F subunit [Kangiella koreensis DSM 16069] Length = 431 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 214/413 (51%), Positives = 267/413 (64%), Gaps = 6/413 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + +L S G + KIL + + II E+K S LRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPWTLKTYESAGGYRMWRKILAEKTPPEEIIEELKLSALRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGT KDRDI+R PH LIEG I + +GA + Y+R Sbjct: 67 SFMPRHAPG-QKYVVCNSDEGEPGTFKDRDILRFNPHQLIEGMAIGGYVMGATVGYNYMR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + + A+ E Y +GLLG N D D+ H GAGAYICGEETALLESLEGK Sbjct: 126 GEFYEPIDRFEQALKEAYKAGLLGKNILGSDVDFDLHSHIGAGAYICGEETALLESLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPAN GLYG PT VNN ES A VP IL +G W+ G+ENN GTK+FS+S Sbjct: 186 KGQPRFKPPFPANYGLYGRPTNVNNTESYASVPVILDKGGKWFLELGKENNGGTKIFSVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHVN P E + F +L++ G L AVIPGGSS P LPA M MDY Sbjct: 246 GHVNKPGNYEIGLGTPFKDLLDMAGGM--KDGKKLKAVIPGGSSAPVLPADVMMDITMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG+ AVI+MD TD+++ + R++ FY ESCGQCTPCREGTGWM R++ R+ Sbjct: 304 DAIGKAGSMLGSGAVIIMDEDTDMVEILGRIAHFYYEESCGQCTPCREGTGWMSRMIHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G ++ ++ L E++ NI GRTICALGDAAA P+Q IK F+ E +I+Q Sbjct: 364 ANGQGKQSDLKDLDEIAGNIMGRTICALGDAAAMPVQSFIKCFKQEFEAKIEQ 416 >gi|169830327|ref|YP_001716309.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169637171|gb|ACA58677.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 656 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 151/427 (35%), Positives = 235/427 (55%), Gaps = 8/427 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 Q R+ G + + + + + G + + +L + + +I+ V SGLRGRGGA Sbjct: 142 FYRHQQRVVLAYCGLINPEDIREYFAIGGYQALADVLTRYTPEEVIDAVTRSGLRGRGGA 201 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW+ + + P Y+V N DE +PG DR ++ +PH+++EG IA++A+GA Sbjct: 202 GFPTGRKWAAARRAEGE-PKYVVCNGDEGDPGAFMDRSVLEGDPHSVLEGMTIAAYAVGA 260 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+ + +LG + G++ DI + GAGA++CGE TA Sbjct: 261 GHGYIYVRAEYPLAVERLKIAIAQARQHRVLGQDIMGTGFNFDIEIFRGAGAFVCGESTA 320 Query: 178 LLESLEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 L+ SLEG +G P+ P P G+ G PT +NNV+S A VP I+ RG W++ G E + Sbjct: 321 LVRSLEGFRGMPKAMPRPRTTEEGIGGKPTLLNNVKSFAYVPQIITRGPEWFASMGTETS 380 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GT +F+++G +E M IT E+I GG G + AV GG S CLP Sbjct: 381 KGTAVFALTGKAKNTGLIEVPMGITLREIIFNIGGGTSTGQE-FKAVQTGGPSGGCLPKE 439 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+D L GS +G+ ++VMD+ T ++ F +ESCGQCTPCR GT Sbjct: 440 -LLDMPVDFDSLTSAGSMMGSGGMVVMDQDTCMVDVARYFLEFTVNESCGQCTPCRVGTY 498 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M++++E + +G + ++ LL ++ K I +IC LG A P+ ++ FR E I Sbjct: 499 QMLKILEDITQGRGKPTDLSLLEDIGKAIIAGSICGLGQTAPNPVLSTLRYFRSEYEAHI 558 Query: 417 DQYHRCN 423 + C Sbjct: 559 GE-KSCP 564 >gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] Length = 624 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q R+ + G + +S+ + ++ G + K L + +K S LRGRGG Sbjct: 138 FYSRQTRLVLHHCGDIDAESIDEYIAMGGYQAFRKALFTMEPADVCRLIKLSNLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ G KW + D Y+V N DE +PG DR +M +PH+++EG +IA FA A Sbjct: 198 GYPAGSKWEQVLSRP-DEIKYVVCNGDEGDPGAFMDRSVMEGDPHSVLEGMLIAGFATKA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L A++ GLLG N G+ DI V+ GAGA++CGE +A Sbjct: 257 TQGYIYVRAEYPVAVERLNKAIEAARGVGLLGENILGSGFSFDIRVNRGAGAFVCGEGSA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I++ G W+ G G EN+ Sbjct: 317 LTASIEGKRGMPRVKPPRTTEHGLWNRPTVLNNVETFANVPRIVQNGGDWFRGIGPENSP 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+ISG+VN +E M T E+I GGIRGG AV GG S CL + Sbjct: 377 GTKVFAISGNVNNTGLIEVPMGTTLREVIFDIGGGIRGG-KAFKAVQIGGPSGGCLTSEH 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK++G+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 436 L-DLPLDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTRR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+V+G + ++D+L E++ I +C LG +AA P+ +K FR + Sbjct: 495 MLEILTRIVEGKGEMEDLDMLEELADTISNTALCGLGKSAANPVVSTLKYFRDEYIAHVR 554 Query: 418 QYHRCN 423 +C Sbjct: 555 D-KKCP 559 >gi|118462706|ref|YP_883190.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104] gi|254776460|ref|ZP_05217976.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium subsp. avium ATCC 25291] gi|118163993|gb|ABK64890.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104] Length = 453 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 207/414 (50%), Positives = 270/414 (65%), Gaps = 8/414 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L G + + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + Sbjct: 31 ESWTLQTYHRHGGYAAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 90 Query: 76 ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI A+ AFIYVRGE + Sbjct: 91 AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPV 150 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQ AV E YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 151 LRRLQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 210 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 211 RPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRP 270 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ + Sbjct: 271 GQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGGV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 328 GSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGT 387 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S I G++ CALGD AA P+ IK FR ++ RC F Sbjct: 388 AEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440 >gi|15676170|ref|NP_273302.1| NADH dehydrogenase I chain F [Neisseria meningitidis MC58] gi|7225468|gb|AAF40700.1| NADH dehydrogenase I, F subunit [Neisseria meningitidis MC58] gi|316985174|gb|EFV64126.1| NADH oxidoreductase, F subunit [Neisseria meningitidis H44/76] gi|325141082|gb|EGC63585.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis CU385] gi|325199449|gb|ADY94904.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis H44/76] Length = 433 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|84494925|ref|ZP_00994044.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649] gi|84384418|gb|EAQ00298.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649] Length = 437 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 200/411 (48%), Positives = 257/411 (62%), Gaps = 5/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q +L + + + K L ++ K SGLRGRGGAGF TGMKW F+P Sbjct: 17 QSWTLETYENNDGYKALKKALATPPADLVQMTKDSGLRGRGGAGFPTGMKWGFLP-PPDG 75 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YLVVNADESEPGTCKD +M P LIEGCVI S+AIG + AFIY+RGE + Sbjct: 76 GPRYLVVNADESEPGTCKDIPLMMAAPQFLIEGCVITSYAIGCNHAFIYLRGEVVHVYRR 135 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV+E YA+G LG N G+D+DI VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 136 LLRAVEEAYAAGHLGKNIHGSGFDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVESIA +P I GA W+S G E ++G +FS+SGHV +P Sbjct: 196 FPAVAGLYARPTVVNNVESIASIPPIFLHGADWFSDMGTEKSQGFGIFSLSGHVKHPGQY 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL++ GG+R L PGGSS P A + +D++ + GS Sbjct: 256 EAPLGITLRELLDM-AGGMRDPEKALKFWTPGGSSTPLFTAEHL-DTPLDFESVAAAGSM 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ +++ RL G + + Sbjct: 314 LGTRALQIFDETTCVVRAVDRWTDFYKHESCGKCTPCREGTWWLKQILGRLEHGQGSEED 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L ++ NI GR+ CALGD A PI I+ FR + + C F Sbjct: 374 LDKLLDICDNILGRSFCALGDGATSPITSSIQYFREEFIAHLTEGS-CPFD 423 >gi|325129044|gb|EGC51894.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis N1568] Length = 431 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMVGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|313679590|ref|YP_004057329.1| NADH dehydrogenase subunit f [Oceanithermus profundus DSM 14977] gi|313152305|gb|ADR36156.1| NADH dehydrogenase subunit F [Oceanithermus profundus DSM 14977] Length = 439 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 190/421 (45%), Positives = 255/421 (60%), Gaps = 13/421 (3%) Query: 6 DRIFTNLYGL----QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60 R LY +L + G ++ +L K + ++ EVK SGLRGRGGAGF Sbjct: 12 PRFTPTLYAHVGKPNSWTLDYYLGHGGYETARAVLTGKQPEEVVEEVKKSGLRGRGGAGF 71 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP + HYL+ NADESEP + KDR +M +PH LIEG +I +AI A Sbjct: 72 PTGVKWSFMP--NDGQQHYLIANADESEPASFKDRYLMEDDPHQLIEGMIIGGYAIRATK 129 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+RGE+ + + L AA+ E Y G LG N G+D D+ VH GAGAYICGEETAL+ Sbjct: 130 GYVYIRGEYRKAYDRLTAAIREAYERGYLGKNLFGSGFDFDLYVHRGAGAYICGEETALM 189 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG + PR+KPPFPA GLYG PTT+NN+ES+A V IL+RGA W++ G E ++G Sbjct: 190 NSLEGLRANPRMKPPFPAQSGLYGKPTTINNIESLASVVHILQRGADWFAQMGTERSKGM 249 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298 KLF +SG P E + F ELI GG + + A IPGGSS P LP + Sbjct: 250 KLFQVSGPARRPGVYELPLGTPFRELIYDWAGGPT---EPIKAFIPGGSSTPLLPFTDEY 306 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GW 357 MDY+ L S LGT V+++ S I+ A+W L FY HESCG+CTPCREG GW Sbjct: 307 LDLPMDYESLVAAKSALGTGGVVLIPESVCIVDAMWNLIRFYGHESCGKCTPCREGVSGW 366 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ E+ +G A + ++ + ++ IEGR+ C L DAA WPI+G +++FR I+ Sbjct: 367 LPQLFEKFERGQATQEDLKTMEDLLDQIEGRSFCPLADAAVWPIRGALRHFRDEFLHHIE 426 Query: 418 Q 418 Sbjct: 427 H 427 >gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum] Length = 597 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 158/427 (37%), Positives = 241/427 (56%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRG-HWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57 Q RI + +Q + ++D + ++ + K + + R+ +I E+K SGLRGRGG Sbjct: 111 FYNKQVRIALEHCGRIQAEDINDYIETAEGYEAIKKAITKMTREDVIEEIKRSGLRGRGG 170 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW F D Y++ NADE +PG DR ++ +PH +IE +I +AIG Sbjct: 171 GGFPTGLKWQFAYNAPGD-QKYVICNADEGDPGAFMDRSVLEGDPHAVIEAMMITGYAIG 229 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A+ +IY+R E+ + L+ A+ + SG LG N ++ DI + GAGA++CGEET Sbjct: 230 ANHGYIYIRAEYPVAIKRLEIALAQARESGYLGKNVMGTDFEFDIELKLGAGAFVCGEET 289 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G KPPFPAN G++ PT +NNVE++A VP I+ +GA W++ G E + Sbjct: 290 ALINSIEGKRGMANPKPPFPANEGVWKKPTIINNVETLANVPKIILKGADWFASIGTEKS 349 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F++ G +N VE M T E+I + GGI G AV GG S C+ A Sbjct: 350 KGTKVFALGGKINNVGLVEVPMGTTLREIIYEVGGGIPNG-KAFKAVQTGGPSGGCITAD 408 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+D L +GS +G+ +IVMD ++ F ESCG+CTPCREGT Sbjct: 409 YL-DTQIDFDSLTALGSMMGSGGMIVMDEDNCMVDIAKFFLDFTVEESCGKCTPCREGTK 467 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ +G ++D L ++ I+ +C LG A P+ +K FR + Sbjct: 468 RMLEILERISEGHGTLEDLDKLERLANTIKSTALCGLGQTAPNPVLSTLKYFRDEYVAHV 527 Query: 417 DQYHRCN 423 +C Sbjct: 528 VD-KKCP 533 >gi|261856545|ref|YP_003263828.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus neapolitanus c2] gi|261837014|gb|ACX96781.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus neapolitanus c2] Length = 429 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 263/416 (63%), Gaps = 7/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKW 66 F + + +L + G + KIL + II E+K S LRGRGGAGF TG+KW Sbjct: 7 FATMQFDEPWTLESYLKTGGYSAWRKILAEKTDPALIIEELKTSNLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DESEPGT KDR I+ + PH L+EG IA + IGA + Y+R Sbjct: 67 SFMPRNAPG-QKYVVCNSDESEPGTAKDRQILLNNPHALVEGMAIAGYTIGATVGYNYMR 125 Query: 127 GEFI-RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GEF + AV E Y GLLG N G D D+ GAGAYICGEETALLESLEG Sbjct: 126 GEFTDLVFRRFETAVKEAYELGLLGKNLQGSGIDFDLYGSLGAGAYICGEETALLESLEG 185 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPAN GLYG PTTVNN E+++ VP I+R G W++ G N+ G KLFS+ Sbjct: 186 KKGQPRFKPPFPANFGLYGRPTTVNNTETLSSVPAIMRNGGQWFADLGVPNSGGLKLFSV 245 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHVN P E M + F EL+ G L AVIPGG+S P +P M MD Sbjct: 246 SGHVNKPGVFEIPMGLPFSELLSMAGG--VREGRKLKAVIPGGTSTPVVPGSVMMQTNMD 303 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + G+ LG+ +IV+D S +++A+ R+S FY ESCGQCTPCREGTGW+ R++ R Sbjct: 304 YDSIAKSGTFLGSGGLIVIDDSACMVEALRRISRFYYSESCGQCTPCREGTGWLYRMLTR 363 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +V+G +++ L +V+ IEGRTICALGDAAA P++ +K+FR E I+ H Sbjct: 364 VVEGKGAMADLNRLDDVASKIEGRTICALGDAAAVPVRSFLKHFRHEFEYYIEHGH 419 >gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio fructosovorans] Length = 490 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 152/425 (35%), Positives = 233/425 (54%), Gaps = 7/425 (1%) Query: 3 TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 Q RI T N + +S+ D ++ ++ + K+L +++ VK SGLRGRGGAGF Sbjct: 8 KKQLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFP 67 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW +D Y+V NADE +P DR ++ +PH+++E I +AIGA Sbjct: 68 TGIKWGIALGNKAD-QKYMVCNADEGDPE-FMDRAVLEGDPHSVVEAMAIGGYAIGATRG 125 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ + L+ A+D+ GLLG N G+D DI + +GAGA++CGEETAL+ Sbjct: 126 TVYIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIR 185 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+P KPPFPA G + PT VNNVE+ A +P I+ GA W+SG G ++GTK Sbjct: 186 SMEGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTK 245 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G + +E M I+ E+I GG AV GG S L A + Sbjct: 246 VFALAGKIQNVGLIEVPMGISLREVIFDIGGGCP-DGKAFKAVQTGGPSGGAL-ANKDLD 303 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + Sbjct: 304 VAIDYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYE 363 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R+ KG + ++D L +S+ I+ +C LG PI + F E +D Sbjct: 364 ILDRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD-K 422 Query: 421 RCNFQ 425 +C Sbjct: 423 KCPAH 427 >gi|254797065|ref|YP_003081903.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii str. Illinois] gi|254590311|gb|ACT69673.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii str. Illinois] Length = 413 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 251/416 (60%), Positives = 308/416 (74%), Gaps = 7/416 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIF+N+ + +LS+++ RG W + K L+K +WII E+K SGLRGRGGAGF Sbjct: 1 MLKPEDRIFSNIQKRESITLSEALRRGDWKDTKKFLDKEPEWIIEEIKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 TG+KWSFMPK + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+ Sbjct: 61 PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++IY+RGEF E L+ + E + L+ K I VH GAGAYICGEETALL Sbjct: 121 VSYIYIRGEFYNESLVLEKVIHEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPPFPA GLYG PTT+NNVESIA VPTIL RG+ W++ G +N+ GT Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE++ I LIEK+ GG+ GGWDNLLAVIPGGSSVP + Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEKYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MD+D L+ +GS LGT +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ Sbjct: 295 TVTMDFDSLRAVGSALGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +M++L +G +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR IE R Sbjct: 355 SLMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRGEIEAR 410 >gi|163855992|ref|YP_001630290.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii DSM 12804] gi|163259720|emb|CAP42021.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii] Length = 455 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 211/418 (50%), Positives = 269/418 (64%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65 I +L G L D + RG ++ + KIL + +I EVKASGLRGRGGAGF TG+K Sbjct: 37 ILADLDG-NNWHLQDYVKRGGYEALRKILSSGMKPEDVIAEVKASGLRGRGGAGFPTGLK 95 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ Sbjct: 96 WSFMPRAFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYI 154 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A++E A+G LG N + + HG GAYICGEETALLESLEG Sbjct: 155 HGEIFEVYQRFEEALEEARAAGFLGDNILGSEFSFQLHAFHGYGAYICGEETALLESLEG 214 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FSI Sbjct: 215 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKVFSI 274 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V P E + F +L+E G G L AVIPGGSS P LPA M MD Sbjct: 275 TGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIMMDITMD 332 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 333 YDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHR 392 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G ++ ++DLL V+ NI GRTICALGDAAA P++G +K++R I ++ C Sbjct: 393 IEHGQGRQEDLDLLDSVAGNIMGRTICALGDAAAMPVRGFLKHYRDEFAHHI-EHKSC 449 >gi|254805712|ref|YP_003083933.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14] gi|254669254|emb|CBA08142.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14] Length = 433 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMVGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|41409304|ref|NP_962140.1| hypothetical protein MAP3206 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398124|gb|AAS05754.1| NuoF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 453 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 207/414 (50%), Positives = 270/414 (65%), Gaps = 8/414 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L G + + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + Sbjct: 31 ESWTLQTYHRHGGYTAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 90 Query: 76 ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI A+ AFIYVRGE + Sbjct: 91 AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPV 150 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQ AV E YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 151 LRRLQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 210 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 211 RPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRP 270 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ + Sbjct: 271 GQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGGV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 328 GSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGT 387 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S I G++ CALGD AA P+ IK FR ++ RC F Sbjct: 388 AEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440 >gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528] gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528] Length = 599 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 153/426 (35%), Positives = 226/426 (53%), Gaps = 8/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I N+ + SL D + RG + + K + + ++ E+ SGLRGRGGA Sbjct: 112 FCKRQYKIALRNVGEIDPISLEDYVERGGYKALKKAISSMKPEDVLEEITKSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + Y+V N DE +PG DR IM +P+++IEG + ++A+G Sbjct: 172 GFPTGRKWKTAADIDTSPI-YVVCNGDEGDPGAFMDRSIMEGDPNSVIEGMTLCAYAVGG 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F Y+R E+ E++Q A+++ LLG+N + DI + G GA++CGE TA Sbjct: 231 TNGFAYIRDEYGLAVENMQKAINKAKDENLLGNNILGTDFSFDIQIVRGGGAFVCGESTA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENN 236 L+ S+EG G+PR K GL+G PT +NNVE+ A VP I+ +G WY G E + Sbjct: 291 LMSSIEGMVGEPRAKYIHTTEKGLWGQPTVLNNVETWANVPIIIEKGGDWYHAIGTMEKS 350 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+FS+ G V VE M T E+I GG+ AV GG S CLPA Sbjct: 351 KGTKVFSLVGKVKNTGLVEVPMGTTLREIIYDIGGGVLNDRK-FKAVQIGGPSGGCLPAE 409 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DYD L + S +G+ +IVMD T ++ F ESCG+C PCREG Sbjct: 410 YL-DLPVDYDTLVKADSMMGSGGMIVMDDRTCMVDVTRYYLSFLAEESCGKCVPCREGVK 468 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ + G ++ +I+ L E+ ++C+LG +A P+ I+ FR EE I Sbjct: 469 RMLEILTDICNGDGKEGDIEELLEICSMTSKASLCSLGKSAPNPVIASIRYFRDEFEEHI 528 Query: 417 DQYHRC 422 RC Sbjct: 529 KN-KRC 533 >gi|302553431|ref|ZP_07305773.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] gi|302471049|gb|EFL34142.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] Length = 449 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 200/425 (47%), Positives = 261/425 (61%), Gaps = 15/425 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 D+DR +L ++ + K L D +I VK SGLRGRGGAGF Sbjct: 24 FWDEDR---------SWTLDVYRRHDGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW F+P+ +PHYLVVNADESEPGTCKD ++ PH+LIEG +IA +AI + A Sbjct: 75 TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACYAIRSSHA 133 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGE + L +AV E Y +G LG N G D+DI VH GAGAYICGEETALL+ Sbjct: 134 FIYLRGEVVPVLRRLHSAVREAYEAGFLGENILGSGLDLDITVHAGAGAYICGEETALLD 193 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++GQPRL+PPFPA GLY CPT VNNVESIA VP I++RG W+ G E + G Sbjct: 194 SLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAIMQRGKEWFRSMGSEKSPGFT 253 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHV P E + IT +L++ G L PGGSS P + Sbjct: 254 LYSLSGHVASPGQYEAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 310 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+G+ GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++ Sbjct: 311 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 370 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ + G Q ++D L +++ NI G++ CALGD AA PI +K FR E+ I Sbjct: 371 LLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRDEYEQHITGRG 430 Query: 421 RCNFQ 425 C F Sbjct: 431 -CPFD 434 >gi|59802067|ref|YP_208779.1| hypothetical protein NGO1746 [Neisseria gonorrhoeae FA 1090] gi|194099642|ref|YP_002002773.1| NuoF [Neisseria gonorrhoeae NCCP11945] gi|239999839|ref|ZP_04719763.1| NuoF [Neisseria gonorrhoeae 35/02] gi|240014998|ref|ZP_04721911.1| NuoF [Neisseria gonorrhoeae DGI18] gi|240017446|ref|ZP_04723986.1| NuoF [Neisseria gonorrhoeae FA6140] gi|240081585|ref|ZP_04726128.1| NuoF [Neisseria gonorrhoeae FA19] gi|240113867|ref|ZP_04728357.1| NuoF [Neisseria gonorrhoeae MS11] gi|240116598|ref|ZP_04730660.1| NuoF [Neisseria gonorrhoeae PID18] gi|240118822|ref|ZP_04732884.1| NuoF [Neisseria gonorrhoeae PID1] gi|240122067|ref|ZP_04735029.1| NuoF [Neisseria gonorrhoeae PID24-1] gi|240124361|ref|ZP_04737317.1| NuoF [Neisseria gonorrhoeae PID332] gi|240126573|ref|ZP_04739459.1| NuoF [Neisseria gonorrhoeae SK-92-679] gi|240129038|ref|ZP_04741699.1| NuoF [Neisseria gonorrhoeae SK-93-1035] gi|254494622|ref|ZP_05107793.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|260439641|ref|ZP_05793457.1| NuoF [Neisseria gonorrhoeae DGI2] gi|268595649|ref|ZP_06129816.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02] gi|268597681|ref|ZP_06131848.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19] gi|268599933|ref|ZP_06134100.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268602267|ref|ZP_06136434.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268604533|ref|ZP_06138700.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268682988|ref|ZP_06149850.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268685153|ref|ZP_06152015.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268687416|ref|ZP_06154278.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291042882|ref|ZP_06568623.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2] gi|293398107|ref|ZP_06642312.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae F62] gi|59718962|gb|AAW90367.1| putative NADH dehydrogenase I chain F [Neisseria gonorrhoeae FA 1090] gi|193934932|gb|ACF30756.1| NuoF [Neisseria gonorrhoeae NCCP11945] gi|226513662|gb|EEH63007.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|268549038|gb|EEZ44456.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02] gi|268551469|gb|EEZ46488.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19] gi|268584064|gb|EEZ48740.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268586398|gb|EEZ51074.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268588664|gb|EEZ53340.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268623272|gb|EEZ55672.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268625437|gb|EEZ57837.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268627700|gb|EEZ60100.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291013316|gb|EFE05282.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2] gi|291611370|gb|EFF40440.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae F62] gi|317165127|gb|ADV08668.1| hypothetical protein NGTW08_1711 [Neisseria gonorrhoeae TCDC-NG08107] Length = 433 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVRRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFAHYIEH 421 >gi|320581561|gb|EFW95781.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor [Pichia angusta DL-1] Length = 488 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 255/433 (58%), Positives = 320/433 (73%), Gaps = 11/433 (2%) Query: 2 LTDQDRIFTNLY-------GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRG 54 L DQDRIF NLY G L +M G W +IL KG WII+E+KASGLRG Sbjct: 20 LADQDRIFQNLYLGNSKKHGTPSYDLKTAMKIGDWYKTKEILLKGDTWIIDEIKASGLRG 79 Query: 55 RGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 RGGAGF +G+KWSFM ++ P YLVVNADE EPGTCKDR+IMR EPH L+EGC++ Sbjct: 80 RGGAGFPSGLKWSFMNPPGWNKNVGPRYLVVNADEGEPGTCKDREIMRKEPHKLVEGCLV 139 Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAY 170 A A+ A A+IY+RGEF E +LQ A+++ Y +G LG ++ G+ D+ +H G GAY Sbjct: 140 AGRAMNATAAYIYIRGEFYNEAVTLQNAINQAYEAGFLGPDACGSGFAFDVYIHRGMGAY 199 Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230 +CGEETAL+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG W+S Sbjct: 200 VCGEETALIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTICRRGGKWFSS 259 Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 FGRE N GTKLF ISG+VN PCTVEE MSI+ ELI+KHCGG++GGWDNLLAVIPGGSS Sbjct: 260 FGRERNSGTKLFCISGNVNEPCTVEEEMSISMRELIDKHCGGVKGGWDNLLAVIPGGSST 319 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 P L +MDYD L++ GSGLGTAAVIV ++ D+++ I RL FYKHESCGQCTP Sbjct: 320 PILNKETCDDILMDYDALRDAGSGLGTAAVIVFNKQADVLRGIQRLLAFYKHESCGQCTP 379 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 CREG+ ++ ++M+R G AQ++EID E++K +EG +ICA+G+A +WP QGL+KNF+P Sbjct: 380 CREGSTYLSKMMDRFYVGQAQEKEIDKALELTKKVEGHSICAMGEAFSWPYQGLVKNFKP 439 Query: 411 LIEERIDQYHRCN 423 L+ ERI +Y R N Sbjct: 440 LMIERIREYKRQN 452 >gi|269128608|ref|YP_003301978.1| NADH-quinone oxidoreductase subunit F [Thermomonospora curvata DSM 43183] gi|268313566|gb|ACY99940.1| NADH-quinone oxidoreductase, F subunit [Thermomonospora curvata DSM 43183] Length = 433 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 199/411 (48%), Positives = 258/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L+ G + + K L D I+ VK SGLRGRGGAGF TGMKW F+P S Sbjct: 17 DSFTLAAYERTGGYQAMRKALRMEPDAIVQAVKDSGLRGRGGAGFPTGMKWGFLP-PNSP 75 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YLVVNADESEPGTCKD +M PH L+EG +I+++AI +H AFIYVRGE + Sbjct: 76 KPRYLVVNADESEPGTCKDIPLMMANPHVLVEGIIISAYAIRSHHAFIYVRGEVLHVIRR 135 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQ AV E Y +G LG + GYD+D++VH GAGAYICGEETALL+SLEG +GQPRLKPP Sbjct: 136 LQQAVAEAYQAGYLGKDILGTGYDLDVVVHTGAGAYICGEETALLDSLEGYRGQPRLKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLYG PT +NNVESI+ VP+I+ G W++ G E ++G +FS+SGHV P Sbjct: 196 FPAVAGLYGGPTVINNVESISSVPSIVANGPDWFASMGTEKSKGFGIFSLSGHVTRPGQY 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL+E G +L PGGSS P M +D++ + GS Sbjct: 256 EAPLGITLRELLEMAGGM--RKGRDLKFWTPGGSSTPLFTKEHM-DVPLDFESVGAAGSM 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R S FY HESCG+CTPCREGT W +++ RL G + + Sbjct: 313 LGTRALQIFDETTCVVRAVLRWSEFYAHESCGKCTPCREGTYWYKQMLRRLENGQGTEED 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++ L ++S NI GR+ CALGD A P+ IK FR I + C F Sbjct: 373 LETLLDLSDNILGRSFCALGDGATSPVTSSIKLFRDEYIAHITEGG-CPFD 422 >gi|218767064|ref|YP_002341576.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491] gi|121051072|emb|CAM07342.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491] gi|319411271|emb|CBY91678.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F; NDH-1, chain F) [Neisseria meningitidis WUE 2594] Length = 433 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL + + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|108760787|ref|YP_629345.1| NADH dehydrogenase I subunit F [Myxococcus xanthus DK 1622] gi|108464667|gb|ABF89852.1| NADH dehydrogenase I, F subunit [Myxococcus xanthus DK 1622] Length = 446 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 205/422 (48%), Positives = 270/422 (63%), Gaps = 14/422 (3%) Query: 13 YGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 Q +L RG ++ + K L+ II+EVK S LRGRGGAGF TG+KWSF+PK Sbjct: 17 GKPQSWTLDSYRKRGGYEALKKALQMEPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD 76 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 S +P YL VN DESEPGT KDR I+ +PH ++EG IAS+A+G H ++Y+RGEF Sbjct: 77 -SPKPKYLAVNGDESEPGTFKDRYILEDDPHMMLEGIAIASYALGVHTCYVYLRGEFKFP 135 Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 E QAA+DE Y +G+ G Y+++ + GAGAYICGEETALLESLEGKKG PRL Sbjct: 136 AERTQAAIDEAYKAGIFGKKVLGKDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFPA VGL+GCPT VNNVE++A VP I ++GA Y+ G + + GT+L +SG VN P Sbjct: 196 KPPFPAVVGLFGCPTVVNNVETLASVPAIFQQGAEAYAKLGTDKSGGTRLVCLSGTVNRP 255 Query: 252 CTVEESMSITFDELIEK--HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 E SM T ELI + G+ G + AVIPGGSS P L A ++ M+++ LK Sbjct: 256 GVYEVSMFTTLSELIFDDKYGRGMPAGRK-VKAVIPGGSSAPVLGADEL-DVAMEFEALK 313 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + G+ VIVMD +T +++++WR++ FY ESCGQCTPCREGT W R++ ++ +G Sbjct: 314 VKQTMAGSGGVIVMDDTTCMVRSLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGR 373 Query: 370 AQKREIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +ID+L V+ +I G TICALGDAAA P + FR E I + HRC Sbjct: 374 GEPGDIDMLSNVASSIAPYPPIGLGNTICALGDAAALPTHSFLMRFRDEFEAHIRE-HRC 432 Query: 423 NF 424 F Sbjct: 433 PF 434 >gi|261400476|ref|ZP_05986601.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970] gi|269209735|gb|EEZ76190.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970] Length = 431 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N + ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDLEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|187923345|ref|YP_001894987.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans PsJN] gi|187714539|gb|ACD15763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans PsJN] Length = 442 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 AGDVERPGNYEIPLGTPFSTLMELAGGM--RGVKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|161870818|ref|YP_001599991.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442] gi|161596371|gb|ABX74031.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442] Length = 433 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 199/406 (49%), Positives = 258/406 (63%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + + A+ + A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFETALAQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGCM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL + + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVYYIEH 421 >gi|126343112|ref|XP_001368340.1| PREDICTED: similar to NADH dehydrogenase [Monodelphis domestica] Length = 465 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 253/421 (60%), Positives = 307/421 (72%), Gaps = 16/421 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 48 LKDEDRIFTNLYGRHEWRLKGAQSRGDWYKTKEILLKGPDWILNEIKTSGLRGRGGAGFP 107 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+I A+GA A Sbjct: 108 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIGGRAMGARAA 167 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ YD D+ V GAGAYICGEETAL+E Sbjct: 168 YIYIRGEFYNEASNLQVAIREAYEAGLIGRNACGSDYDFDVFVVRGAGAYICGEETALIE 227 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGSWFASFGRERNSGTK 287 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLL VIPGGSS P +P Sbjct: 288 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLGVIPGGSSTPLIPKSVCET 347 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDR--STDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +MD+DGL + +GLGTAAVIVMDR T + + R+ P G WM Sbjct: 348 VLMDFDGLIQAQTGLGTAAVIVMDRSVRTPLARPAVRM-------------PLPAGVDWM 394 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +VM R VKG A+ EID +E+SK IEG TICALGD AWP+QGLI++FRP +E+R+ + Sbjct: 395 NKVMWRFVKGDARVSEIDAFWEISKQIEGHTICALGDGPAWPVQGLIRHFRPELEDRMHR 454 Query: 419 Y 419 + Sbjct: 455 F 455 >gi|254468829|ref|ZP_05082235.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium KB13] gi|207087639|gb|EDZ64922.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium KB13] Length = 437 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 200/430 (46%), Positives = 273/430 (63%), Gaps = 11/430 (2%) Query: 2 LTDQDRIFTNLYGL-----QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRG 54 L + ++ N+ S+ S G ++ + +IL+ +I+E+K SGLRG Sbjct: 11 LENNNKQLFNICLRTSSLKNPGSIKTYQSIGGYEQIKRILKNKIDPQQLIDEIKISGLRG 70 Query: 55 RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114 RGGAGF TG+KWSFMP+ D Y+V N+DE EPGT KDRDI+R+ PH LIEG +I ++ Sbjct: 71 RGGAGFPTGVKWSFMPRDY-DGTKYIVCNSDEGEPGTFKDRDIIRYNPHQLIEGMIIGAY 129 Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICG 173 + A F Y+ GE + + A+++ +G LG+N G+D ++ HG GAYICG Sbjct: 130 IMNAQVGFNYIHGEIWEDYVFFEKAIEDARKAGFLGNNILGSGFDFELHAVHGYGAYICG 189 Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233 EETAL+ES+EGKKGQPR KPPFPA G+YG PT VNN E+ A +P I+ G + G Sbjct: 190 EETALIESIEGKKGQPRYKPPFPATYGIYGKPTNVNNTETYASIPWIIEHGGQEFMSHGV 249 Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293 N+ GTK+FS+SGHV P E + + F +L+ + G + L AVIPGG S P + Sbjct: 250 PNSGGTKIFSVSGHVEKPGNYEIQLGMPFRQLLAEAGGVWKN--RQLKAVIPGGPSTPVV 307 Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353 PA + A +DYDGL ++GS +G ++IVMD ST +++A+ RLS F+ ESCGQCTPCRE Sbjct: 308 PANIIIDATLDYDGLAQIGSSVGAGSMIVMDDSTCMVQALRRLSYFFYEESCGQCTPCRE 367 Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 GTGW+ R+++R+ KG A ++DLL +VSK I GRTICALGDAAA P+ IK+FR E Sbjct: 368 GTGWVYRIIDRIFKGQATLADLDLLTDVSKKISGRTICALGDAAATPVLSFIKHFRSEFE 427 Query: 414 ERIDQYHRCN 423 I N Sbjct: 428 NFIKHGKSVN 437 >gi|224824818|ref|ZP_03697925.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002] gi|224603311|gb|EEG09487.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002] Length = 431 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 206/408 (50%), Positives = 260/408 (63%), Gaps = 6/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L ++RG + + KIL + ++ +I EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DAWRLDAYVARGGYQALRKILDSKLPQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+R PH LIEG +IA +A+G + Y+ GE E Sbjct: 79 PG-DKYVVCNTDEGEPGTFKDRDILRFNPHALIEGMIIAGYAMGTKAGYNYIHGEVFAEY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + + A++E +G LG + + ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEEALEEARKAGFLGQHILGTDFSFELYAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN ES A VP I+R GA + G+ NN GTKLFS+SGHVN P Sbjct: 198 PPFPASFGLYGKPTTINNTESFASVPFIIRDGAQKFLEAGKPNNGGTKLFSVSGHVNRPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F L+E G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEIPLGTPFSTLLEMAGGM--RDGKKLKAVIPGGSSAPILPAEIMMSCTMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVIVM+ +IKA+ RL+ FY ESCGQCTPCREGTGW+ RV+ R+ G + Sbjct: 316 SMLGSGAVIVMNEDVCMIKALERLAYFYHEESCGQCTPCREGTGWLYRVIHRIANGEGRP 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++LL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 376 GDLELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRHEFEYAIEHGK 423 >gi|296169187|ref|ZP_06850840.1| NADH-quinone oxidoreductase subunit F [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896085|gb|EFG75752.1| NADH-quinone oxidoreductase subunit F [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 440 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 204/414 (49%), Positives = 266/414 (64%), Gaps = 8/414 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L + + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + Sbjct: 21 ESWTLETYRRHDGYQALKKALAMAPDDVIATVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 80 Query: 76 ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 +PHYLVVNADESEPGTCKD +M PH L+EG +IA++AI A AFIYVRGE + Sbjct: 81 AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPV 140 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQ AV E YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 141 LRRLQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 200 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 201 RPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVARP 260 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ Sbjct: 261 GQYEAPLGITLRELL-AYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAA 317 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 318 GSMLGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGT 377 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S I G++ CALGD AA P+ IK FR ++ C F Sbjct: 378 NEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEDGG-CPFD 430 >gi|78224540|ref|YP_386287.1| NADH dehydrogenase I subunit F [Geobacter metallireducens GS-15] gi|78195795|gb|ABB33562.1| NADH dehydrogenase I, F subunit [Geobacter metallireducens GS-15] Length = 591 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 167/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 + Q RI T + +SL ++ + ++K + E +I+EVK +GLRGRGG Sbjct: 107 FVDQQMRIVMTGCGQIDPESLDAYLAEDGFKAIEKCVKEMTPAAVIDEVKKAGLRGRGGG 166 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKWSF + YL+ NADE +PG DR I+ +P+ +IEG +IA++AIG Sbjct: 167 GFPTGMKWSFCA-ATPGKLKYLICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGC 225 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ E LQ A+D C G LG N G+D D+I+ GAGA++CGEETA Sbjct: 226 SKGYVYVRAEYPLAIERLQKALDVCREKGYLGHNIQGWGFDFDLIIKKGAGAFVCGEETA 285 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+ PT +NNVE+ A V I+ +GA WY+ G + + Sbjct: 286 LMASIEGERGMPRPRPPFPAVKGLWAKPTNINNVETFANVRHIINKGAEWYASLGTDTTK 345 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE +T ++I CGGI AV GG S C+P Sbjct: 346 GTKIFAVTGKVKHTGLVEVPAGMTVRDVIYNVCGGIANNRK-FKAVQAGGPSGGCIPPEV 404 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G Sbjct: 405 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTRMESCGKCVPCRIGLKV 463 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G Q +I+ L E+ I+ ++C LG A PI I+ FR E I Sbjct: 464 MLDILERITAGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIRYFREEYEAHIT 523 Query: 418 QYHRCN 423 RC Sbjct: 524 D-KRCP 528 >gi|261364352|ref|ZP_05977235.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996] gi|288567616|gb|EFC89176.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996] Length = 433 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + +IL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + + A+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEVALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ A VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIIHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFREEFVHYIEH 421 >gi|297538951|ref|YP_003674720.1| NADH-quinone oxidoreductase subunit F [Methylotenera sp. 301] gi|297258298|gb|ADI30143.1| NADH-quinone oxidoreductase, F subunit [Methylotenera sp. 301] Length = 447 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 211/423 (49%), Positives = 272/423 (64%), Gaps = 7/423 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGA 58 L Q + L SL + G + + +I+ + II EVK SGLRGRGGA Sbjct: 22 LKGQTLVTLRTLTEEDPASLETYIKLGGYSALKRIVTEKTKATDIITEVKTSGLRGRGGA 81 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ D YLV N+DE EPGT KDRDI+R+ PH LIEG IA++ +GA Sbjct: 82 GFPTGLKWSFMPRYF-DGVKYLVCNSDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGA 140 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+ GE ++ E +AA+ E A+G LG N ++ D+ HG GAYICGEETA Sbjct: 141 RVGYNYIHGEIWQDYEIFEAALHEAKAAGYLGENILGSNFNFDLYAVHGYGAYICGEETA 200 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES +P IL G ++ G N+ Sbjct: 201 LIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWILEHGGQAFADLGVPNSG 260 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLFS+SGHV P E M + F+EL+E G +G L AVIPGG S P +PA Sbjct: 261 GTKLFSVSGHVEKPGNYEVKMGMPFNELLELAGGVWKG--RKLKAVIPGGPSTPVMPAEA 318 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A MDY+GL + S LG ++IVMD +T ++KA+ RLS F+ ESCGQCTPCREGTGW Sbjct: 319 IMAATMDYEGLSKARSSLGAGSMIVMDETTCMVKALHRLSYFFYEESCGQCTPCREGTGW 378 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV++R+V G + ++DLL +VS NI GRTICALG+AAA P+ IK+FRP E I Sbjct: 379 VYRVIDRIVNGKGKMEDLDLLTDVSNNIAGRTICALGEAAATPVLSFIKHFRPEFEYYIQ 438 Query: 418 QYH 420 Sbjct: 439 HGK 441 >gi|195576920|ref|XP_002078321.1| GD22602 [Drosophila simulans] gi|194190330|gb|EDX03906.1| GD22602 [Drosophila simulans] Length = 499 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 255/456 (55%), Positives = 310/456 (67%), Gaps = 46/456 (10%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP + +DR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKAWHL----------QDREIMRHDPHKLVEGCLIARRAMGAQAA 159 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG------------------------------- 150 +IY+RGEF E +L++ + + L Sbjct: 160 YIYIRGEFYNEEPALRSEISAHPPAVRLSDADAPWAQLPTLIVRVSTSFQHATGHAEPPS 219 Query: 151 -----SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GYD D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GCP Sbjct: 220 WSDWKKACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCP 279 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 TTV NVE++AV PTI RRG W++ FGR N GTKLF+ISGHVN PCTVEE MSI EL Sbjct: 280 TTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRPCTVEEEMSIPLKEL 339 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 IE+HCGG+ GGWDNLL VIPGGSS P +P IMD+DGL + LGTAA+IVMD+ Sbjct: 340 IERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMDK 399 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 STD+IKAI RL FYKHESCGQCTPCREG GWM ++M R VKG AQ EID+L+E+SK I Sbjct: 400 STDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQI 459 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 EG TICALGD AAWP+QGLI++FRP IE+R+ + + Sbjct: 460 EGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHAK 495 >gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] Length = 584 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 148/425 (34%), Positives = 231/425 (54%), Gaps = 5/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R+ N + +SL D ++ + + L + +IN +K +GLRGRGGAG Sbjct: 100 FFASQTRVVLANCGEIDPESLDDYLAHKGYIALQNALAMSPEDVINTMKTAGLRGRGGAG 159 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TGMKW F + D Y+V NADE +PG DR ++ +PH +IEG +IA +AIGA Sbjct: 160 FPTGMKWDFCRQAEGD-QKYIVCNADEGDPGAFMDRSVLEGDPHAVIEGMIIAGYAIGAT 218 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + L A+ + G LG N + + + GAGA++CGEETAL Sbjct: 219 EGYIYCRAEYPIAIKRLTKAIAQTEERGYLGKNIQGSDHSFHLTIKQGAGAFVCGEETAL 278 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L S+EG++G P+++PPFPA GL+G PTT+NNVE++A V + +GA W++ G E ++G Sbjct: 279 LASIEGRRGMPKIRPPFPAQKGLWGKPTTINNVETLANVRHVFEKGADWFASIGTEKSKG 338 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G + VE M +T +L+ GG+ + GG S CLP + Sbjct: 339 TKVFALAGKIKNTGLVEVPMGMTIRDLVFGPGGGMLRKKAKFKGIQLGGPSGGCLPES-L 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + + G+ +G+ ++VMD T ++ F +ESCG+C PCR G Sbjct: 398 LDTPIDYESINKTGAIMGSGGMVVMDTRTCMVDVARFFLDFTVNESCGKCVPCRVGLKRT 457 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + V++ + G + + L E+ I+ +C LG+ A P+ ++ F E I Sbjct: 458 LEVLDEITAGRGTEEHLTFLQEMGITIKNTALCGLGNTAPNPVLTTMRYFPQEYEAHIRD 517 Query: 419 YHRCN 423 H C Sbjct: 518 -HVCP 521 >gi|325135049|gb|EGC57677.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M13399] gi|325145239|gb|EGC67518.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240013] gi|325145310|gb|EGC67588.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240013] gi|325205331|gb|ADZ00784.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M04-240196] Length = 433 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|187477546|ref|YP_785570.1| NADH dehydrogenase I subunit F [Bordetella avium 197N] gi|115422132|emb|CAJ48656.1| NADH dehydrogenase I chain F [Bordetella avium 197N] Length = 455 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 210/418 (50%), Positives = 267/418 (63%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L++ + RG ++ + KIL + +I EVKASGLRGRGGAGF TG+K Sbjct: 37 ILEGLDG-DNWRLAEYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLK 95 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ Sbjct: 96 WSFMPRAFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYI 154 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E + A++E A+G LG ++ + HG GAYICGEETALLESLEG Sbjct: 155 HGEIFEVYERFEEALEEARAAGFLGDKLLGSDFNFQLHAFHGYGAYICGEETALLESLEG 214 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FSI Sbjct: 215 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKIFSI 274 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V P E M F +L+E G G L AVIPGGSS P LPA + MD Sbjct: 275 TGDVERPGNYEIPMGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIIMECTMD 332 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 333 YDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHR 392 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G + ++D+L V+ NI GRTICALGDAAA P++ IK+FR I ++ C Sbjct: 393 IETGQGRAEDLDMLDTVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449 >gi|124514282|gb|EAY55796.1| NADH dehydrogenase, subunit F [Leptospirillum rubarum] Length = 1048 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 149/425 (35%), Positives = 236/425 (55%), Gaps = 8/425 (1%) Query: 2 LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 Q +I + S+ D + G ++ + ++ + D +I+ + SGLRGRGGAG Sbjct: 116 FRKQVKIVSKRCGVIDPSSIDDYLKTGGYNALKAVIAGETPDSVIDTLIRSGLRGRGGAG 175 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-A 118 F TGMKW F + D Y+V NADE +PG DR ++ +PH++IEG +I +FAIG A Sbjct: 176 FPTGMKWKFTRQAQGD-VKYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ L+ A+ + G LG + + GAGAY+CGEETA Sbjct: 235 RQGYIYCRAEYPHAIRLLKKAIAQAMERGYLGERILGSDLSFHLEIKEGAGAYVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G +G P KPPFPA G++ PT +NNVE++A +P I+ GA W++ +G E + Sbjct: 295 LLASIMGDRGMPWPKPPFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G + +E + T E++ + GG+ G A GG S C+P Sbjct: 355 GTKTFALTGKIKRTGLIEVAAGTTLKEIVYEIAGGM-SGHKKFKAAQLGGPSGGCIPVD- 412 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L G+ +G+ +IV+D + I+ F K ESCG+CTPCR+GT Sbjct: 413 LIDTPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKV 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++R+ G + +++D L +S ++ ++C LG AA P+ I+ FR E+ I Sbjct: 473 MLDMIQRISDGRGEMKDLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIK 532 Query: 418 QYHRC 422 + +C Sbjct: 533 R-KKC 536 >gi|270308048|ref|YP_003330106.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] gi|270153940|gb|ACZ61778.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] Length = 626 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R +F N + S+ D ++ G + ++ K + + I++E+ SGLRGRGG Sbjct: 139 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISGLKPEEIVDEIIKSGLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+ Sbjct: 199 GFPTGWKWKSC-RDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H A+IY+R E+ A+ + GLLG N G+++ I ++ G GA++CGE TA Sbjct: 258 HEAYIYIRDEYPMAVRHALLAIKQAEDYGLLGGNILGSGFNLKIHINRGGGAFVCGESTA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++ Sbjct: 318 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIMEKGADWFNKIGTAGSK 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN +E M IT E++ GGI G A+ GG S CLP Sbjct: 378 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG Sbjct: 436 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++E++ KG ++ +I+LL ++S+ I+ ++CALG +A P+ IK FR E I Sbjct: 496 MRQILEKITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 555 Query: 418 QYHRCN 423 Q C Sbjct: 556 Q-KTCP 560 >gi|147669306|ref|YP_001214124.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|146270254|gb|ABQ17246.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] Length = 623 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R +F N + S+ D ++ G + ++ K + D I+ E+ SGLRGRGG Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGG 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+ Sbjct: 196 GFPTGWKWKSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H A+IY+R E+ + A+ + GLLG N G+ + I ++ G GA++CGE TA Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++ Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSK 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN +E M IT E++ GGI G A+ GG S CLP Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++E++ KG ++ +I+ L ++S+ I+ ++CALG +A P+ IK FR E I Sbjct: 493 MRQILEKITKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 552 Query: 418 QYHRCN 423 Q C Sbjct: 553 Q-KTCP 557 >gi|323525441|ref|YP_004227594.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1001] gi|323382443|gb|ADX54534.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1001] Length = 442 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|218244989|ref|YP_002370360.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801] gi|218165467|gb|ACK64204.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801] Length = 535 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 149/420 (35%), Positives = 246/420 (58%), Gaps = 6/420 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q + N + +S+ + +SRG + + ++L E + +I EV SGLRGRGG Sbjct: 117 FFARQFPIVLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGG 176 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ + + Y++ NADE +PG DR I+ +PH ++EG IA +A+GA Sbjct: 177 GYPTGVKWATVAKMPT-QQKYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGA 235 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY+R E+ + L+ A+ + GL+G +D I + GAGA++CGEETA Sbjct: 236 NHGYIYIRAEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRVGAGAFVCGEETA 295 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+R G +WY+ G E ++ Sbjct: 296 LMASVEGKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGAWYASIGTEKSK 355 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V +E M T E++E+ GG+ + + AV GG S C+P Sbjct: 356 GTKVFALTGKVKNIGLIEVPMGTTIREIVEEIGGGV-SDGEKVKAVQTGGPSGGCIP-EH 413 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++YD L+++G+ +G+ +IVMD ST +++ F + ESCG+C PCR GT Sbjct: 414 LFDTPVEYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQ 473 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ +LV+G A R++ L + + ++ ++C LG A P+ + FR I Sbjct: 474 LYNLLTKLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFRDEYLALIQ 533 >gi|118498236|ref|YP_899286.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. novicida U112] gi|118424142|gb|ABK90532.1| NADH dehydrogenase I, F subunit [Francisella novicida U112] Length = 424 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQKVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419 >gi|238023164|ref|ZP_04603590.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147] gi|237865547|gb|EEP66687.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147] Length = 431 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 203/418 (48%), Positives = 260/418 (62%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTG 63 IF ++ +L + + RG + + KI+ + +D IINE+K S LRGRGGAGF TG Sbjct: 9 IFKDVNTQDPSCWTLDEYIKRGGYQALRKIISEKTPQDDIINELKTSNLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSFMP+ Y+V N DE EPGT KDRDI+ PH LIEG +I + +GA + Sbjct: 69 LKWSFMPRAFEG-QKYVVCNTDEGEPGTFKDRDIILFNPHALIEGMIIGGYTMGASAGYN 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+ GE + +AA+ + + LLG N + ++ HHG GAY+CGEETALLESL Sbjct: 128 YIHGEIFEGYQRFEAALAQAREANLLGQNILGSDFSFELFAHHGYGAYVCGEETALLESL 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP ILR G ++ G E GTKLF Sbjct: 188 EGKKGQPRFKPPFPASFGLYGKPTTINNTETFSSVPFILRDGGQTFADIGIEKAGGTKLF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 SISGHV P E + F EL+ G G L AVIPGGSS P LPA + Sbjct: 248 SISGHVERPGNYEIPLGTPFAELLAMAGG--VRGGKKLKAVIPGGSSAPVLPADIIMQIN 305 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + + GS LG+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ Sbjct: 306 MDYDSIAKAGSMLGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIV 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+ G + ++DLL V N+ GRTICAL DAA +P++G K+FR I+ Sbjct: 366 HRIANGKGRMEDLDLLDSVGNNMAGRTICALADAAVFPVRGFTKHFREEFVHYIEHGK 423 >gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098] gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098] Length = 526 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 151/426 (35%), Positives = 234/426 (54%), Gaps = 6/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R + N + S+ D + + + K + E + II+ VK SGLRGRGGA Sbjct: 40 FYENQKRLVLKNCGIIDPSSIEDYIGLDGYKALYKAIYELDQREIIDIVKDSGLRGRGGA 99 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + S Y++ NADE +PG DR ++ +PH+++E I +FAIGA Sbjct: 100 GFPVGRKWEAAYREDSPI-KYIICNADEGDPGAFMDRSVLELDPHSVLEAMAIGAFAIGA 158 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ + ++L+ A+ + A LLG N + DI + GAGA++CGE TA Sbjct: 159 NKGFIYVRAEYPKAVKALEKAIKDAKAYNLLGENILDSDFSFDIELRLGAGAFVCGEGTA 218 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G PR K GL+G PT +NNVES+A + I+ +G +W+ FG E + Sbjct: 219 LMESIEGKRGMPRNKEYRTTVKGLWGKPTVINNVESLANIGQIINKGPAWFRTFGTEKSP 278 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++SG V VE +M + + ++ GI+ + AV GG S C+P + Sbjct: 279 GTKVFALSGKVKRAGLVEVAMGTSINTIVYDIGKGIQADKEA-KAVQTGGPSGGCIPK-R 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + D++ LK +GS +G+ ++VMD ++ F ESCG+CTPCR G Sbjct: 337 LFDTACDFESLKAIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++ L KG A + +D L E++ + ++C LG ++ PI +K F E I Sbjct: 397 LFEMLDDLTKGKADQESLDKLDELAHIVAETSLCGLGKSSPNPIISTMKYFYDEYEAHIG 456 Query: 418 QYHRCN 423 + C Sbjct: 457 KTKTCP 462 >gi|289432572|ref|YP_003462445.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|288946292|gb|ADC73989.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 623 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R +F N + S+ D ++ G + ++ K + D I+ E+ SGLRGRGG Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGG 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+ Sbjct: 196 GFPTGWKWKSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H A+IY+R E+ + A+ + GLLG N G+ + I ++ G GA++CGE TA Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++ Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSK 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN +E M IT E++ GGI G A+ GG S CLP Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++E++ KG ++ +I+ L ++S+ I+ ++CALG +A P+ IK FR E I Sbjct: 493 MRQILEKITKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 552 Query: 418 QYHRCN 423 Q C Sbjct: 553 Q-KTCP 557 >gi|73748525|ref|YP_307764.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] gi|73660241|emb|CAI82848.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] Length = 623 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R +F N + S+ D ++ G + ++ K + D I+ E+ SGLRGRGG Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGG 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + D Y++ N DE +PG DR +M PH++IEG +I ++AIG+ Sbjct: 196 GFPTGWKWKSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H A+IY+R E+ + A+ + GLLG N G+ + I ++ G GA++CGE TA Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+PR K + GLY PTT+NNVE+ A +P I+ +GA W++ G ++ Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSK 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN +E M IT E++ GGI G A+ GG S CLP Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L + GS +G+ A+IVMD +++ F + ESCG+C PCREG Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++E++ KG ++ +I+ L ++S+ I+ ++CALG +A P+ IK FR E I Sbjct: 493 MRQILEKITKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 552 Query: 418 QYHRCN 423 Q C Sbjct: 553 Q-KTCP 557 >gi|326473915|gb|EGD97924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton tonsurans CBS 112818] gi|326480914|gb|EGE04924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton equinum CBS 127.97] Length = 511 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 253/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DW F Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWS----------------FM 128 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W K P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A A Sbjct: 129 NFKDWDKDTK-----PRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETAL+E Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+GTK Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++ Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483 Query: 421 RCN 423 + N Sbjct: 484 QAN 486 >gi|121634118|ref|YP_974363.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18] gi|120865824|emb|CAM09556.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18] gi|325137073|gb|EGC59669.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M0579] gi|325139137|gb|EGC61683.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis ES14902] gi|325143087|gb|EGC65434.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis 961-5945] gi|325143157|gb|EGC65503.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis 961-5945] gi|325197532|gb|ADY92988.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis G2136] gi|325202925|gb|ADY98379.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240149] gi|325207277|gb|ADZ02729.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis NZ-05/33] Length = 433 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|239929609|ref|ZP_04686562.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291437933|ref|ZP_06577323.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291340828|gb|EFE67784.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 448 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 204/425 (48%), Positives = 264/425 (62%), Gaps = 15/425 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 D+DR +L G ++ + K L D +I VK SGLRGRGGAGF Sbjct: 23 FWDEDR---------SWTLDVYRRHGGYEGLRKALAMSPDDVIAYVKDSGLRGRGGAGFP 73 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW F+P+ +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + A Sbjct: 74 TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHA 132 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGE + L AAV E YA+GLLG N G D+++ VH GAGAYICGEETALL+ Sbjct: 133 FIYLRGEVVPVLRRLHAAVREAYAAGLLGENVLGSGLDLELTVHAGAGAYICGEETALLD 192 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++GQPRL+PPFPA GLY CPT VNNVESIA VP+IL RG W+ G E + G Sbjct: 193 SLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPSILHRGKEWFRSMGSEKSPGFT 252 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHV P E + IT +L+E G L PGGSS P + Sbjct: 253 LYSLSGHVANPGQYEAPLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 309 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+G+ GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++ Sbjct: 310 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 369 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ + G + ++D L +++ NI G++ CALGD AA PI +K FR E+ I Sbjct: 370 LLRDIEAGKGRMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG 429 Query: 421 RCNFQ 425 C F Sbjct: 430 -CPFD 433 >gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH [Geobacter metallireducens GS-15] Length = 635 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 242/426 (56%), Gaps = 8/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R I + L KS+ D ++ G + + K+L + + ++ E+K S LRGRGG Sbjct: 131 FYKNQQRNILSENLRLDSKSMDDYLAIGGYSALSKVLFQMTPEDVMGEIKKSNLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF KW + D Y++VNADE +PG DR ++ PH+++EG +I ++A+GA Sbjct: 191 GFPAWRKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H FIYVR E+ E++ A+ + G +G + G+D + VH GAGA++CGE +A Sbjct: 250 HEGFIYVRQEYPLAVENINLAIRQASERGFVGKDILGSGFDFTVKVHMGAGAFVCGESSA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ +LEG+ G+PR K A G++ P+ +NNVE+ A V I+ +GA W++ +G + Sbjct: 310 LMTALEGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIITKGADWFTSYGTAGST 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G + VE M +T ++I K GGI G AV GG S C+P Sbjct: 370 GTKIFSLVGKITNTGLVEVPMGVTLRDIITKVGGGIP-GGKKFKAVQTGGPSGGCIPEA- 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L + GS +G+ +IVMD T ++ F K ESCG+CTPCREG Sbjct: 428 MLDLPVDFDELTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ V+ R+ G ++ +I+LL E++++ G +CALG +A P+ I+ FR E I Sbjct: 488 MLAVLTRITVGKGKEGDIELLEELAES-TGAALCALGKSAPNPVLSTIRYFRDEYEAHIR 546 Query: 418 QYHRCN 423 + +C Sbjct: 547 E-KKCP 551 >gi|292493663|ref|YP_003529102.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] gi|291582258|gb|ADE16715.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] Length = 427 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 218/425 (51%), Positives = 276/425 (64%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58 M+ F L L + + + +IL++ II EVKASGLRGRGGA Sbjct: 1 MIALNQVCFRTLDLDPPWGLENYLKVKGYKVWKRILKEKTPPSKIIEEVKASGLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ Y+V N+DE EPGT KDRDIMR+ PH LIEG IA +AIGA Sbjct: 61 GFPTGLKWSFMPQNLPG-TKYIVCNSDEGEPGTFKDRDIMRYNPHQLIEGMAIAGYAIGA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+RGEF+ + +AA++E Y +GLLG N G D D+ H GAGAYICGEETA Sbjct: 120 TAGYNYIRGEFVEPIDRFEAALEEAYEAGLLGKNILGSGIDFDLYSHPGAGAYICGEETA 179 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKG PR KPPFPA GLYG PTT+NN ES+A VP IL +G W+ G + Sbjct: 180 LLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTESLASVPVILEKGGQWFLKLGTPTSG 239 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+SGHVN P E M F +L+E G + L AVIPGG+SVP +PA Sbjct: 240 GTKIFSVSGHVNRPGNYEVPMGTPFKDLLELAGGM--RNGNALKAVIPGGTSVPVMPAEA 297 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A MDYD L + GS LG +VI+MD +T +++A+ R+S FY ESCGQCTPCREGTGW Sbjct: 298 IMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYYEESCGQCTPCREGTGW 357 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV+ R+ G + ++D L V++NI+G TICALGDAAA P+ I++FR + ID Sbjct: 358 LYRVVRRIEHGQGTQEDLDKLVNVAQNIDGHTICALGDAAAAPVISFIQHFRDEFQYHID 417 Query: 418 QYHRC 422 + RC Sbjct: 418 -HKRC 421 >gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7] gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7] Length = 626 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + +++ ++ ++ + ++L D +I+E+K SGLRGRGG Sbjct: 140 FYKKQKRIALRNCGLINPEDITEYIAMNGYEALGRVLTQMTPDSVIDEIKKSGLRGRGGG 199 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K SD +++ NADE +PG DR I+ +P++++E IA + IGA Sbjct: 200 GFPTGIKWEMTKKSQSD-TKFIICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGA 258 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY+R E+ L+ A+ + Y GLLG N + I + +GAGA+ICGEETA Sbjct: 259 NKGYIYIRAEYPLAINRLRIAIKQAYDLGLLGDNILGSSFSFHIDLKYGAGAFICGEETA 318 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P +KPPFP+ +GL+ PT +NNVE++A + I+ G+ W+S G E ++ Sbjct: 319 LINSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIAPIILNGSQWFSSIGTEKSK 378 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M IT E+I GGIR G AV GG S C+PA Sbjct: 379 GTKVFALAGKINNVGLVEVPMGITLREIIYDLGGGIR-GGKKFKAVQTGGPSGGCIPADH 437 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L E+GS +G+ +IVMD ++ F ESCG+CT CR G Sbjct: 438 L-DIPIDYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGRCTACRIGNKR 496 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++E + G ++ L ++S I+ ++C LG + P+ +K F + Sbjct: 497 LLEILENITNGKGTMEHLEGLKDLSYVIKDSSLCGLGQTSPNPVISTMKFFWDEYVSHVK 556 Query: 418 QYHRCN 423 H C Sbjct: 557 DKH-CP 561 >gi|301060225|ref|ZP_07201092.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300445737|gb|EFK09635.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 651 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 152/421 (36%), Positives = 235/421 (55%), Gaps = 5/421 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 ++ + + + + D ++ G + + K L+ + +I EVKASGLRGRGGAGF TG Sbjct: 143 EKRLVMEKCGRVDPEEIDDYLAHGGYAALAKALQSSPEMVIEEVKASGLRGRGGAGFPTG 202 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW K ++ NADE +PG DR I+ PH ++EG +I + AIGA A + Sbjct: 203 MKWELAAKA-GRVEKTVICNADEGDPGAYMDRTILESNPHQVLEGIIICARAIGAQKAVV 261 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ + + A+ LLG + +DI V G+GA++CGEETAL++S+ Sbjct: 262 YVRAEYPLAVKMVTRAIARAKEMRLLGDRILGSPFSLDIEVFQGSGAFVCGEETALIQSI 321 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++G P +PPFP GL+G PT +NNV++ A VP ++ GA + G E + GT +F Sbjct: 322 EGRRGMPTYRPPFPVQKGLWGQPTVINNVKTFATVPFVVAHGALQFREVGTEKSPGTAIF 381 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+ G+V + VE M + L+ CGGI AV GG S CLPA + Sbjct: 382 SVVGNVRHAGLVEIPMGVDLRTLVFDTCGGIP-NKKAFKAVQIGGPSGGCLPAEFL-DTP 439 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L E G+ +G+ ++VMD T ++ F + ESCG+CT CR GT ++ ++ Sbjct: 440 IDFDSLTEAGAMMGSGGMVVMDEDTCMVDVARYFLDFTQKESCGKCTFCRVGTHHLLEIL 499 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ KG ++ ++++L +S++I+ ++C LG A P+ +K FR E I + RC Sbjct: 500 VRITKGEGREGDLEILESLSEDIKAGSLCGLGKTAPNPVLTSLKYFRDEYEAHIKE-KRC 558 Query: 423 N 423 Sbjct: 559 P 559 >gi|170696394|ref|ZP_02887523.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis C4D1M] gi|170138722|gb|EDT06921.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis C4D1M] Length = 442 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 208/416 (50%), Positives = 272/416 (65%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+ GG+RGG + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLM-DLAGGMRGGRK-IKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|311104663|ref|YP_003977516.1| NADH oxidoreductase (quinone) subunit F [Achromobacter xylosoxidans A8] gi|310759352|gb|ADP14801.1| NADH oxidoreductase (quinone), F subunit [Achromobacter xylosoxidans A8] Length = 455 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 212/421 (50%), Positives = 268/421 (63%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62 Q +I ++ G L+D + RG ++ + KIL + +I EVKASGLRGRGGAGF T Sbjct: 34 QPQIMADVDGAN-WRLADYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPT 92 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Sbjct: 93 GLKWSFMPRAFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGY 151 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + A++E A+G LG Y + HG GAYICGEETALLES Sbjct: 152 NYIHGEIFEVYERFEEALEEARAAGFLGDKILGSDYSFQLHAFHGYGAYICGEETALLES 211 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R Y G+ NN GTKL Sbjct: 212 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKL 271 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FSI+G V P E + F L+E G G L AVIPGGSS P LPA + Sbjct: 272 FSITGDVERPGNYEIPLGTPFSTLLELAGGM--RGGKKLKAVIPGGSSAPVLPADVIMEC 329 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R+ Sbjct: 330 TMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRM 389 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G + ++DLL V+ NI GRTICALGDAAA P++G +K+FR I ++ Sbjct: 390 VHRIENGHGRPEDLDLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHI-EHKS 448 Query: 422 C 422 C Sbjct: 449 C 449 >gi|257058013|ref|YP_003135901.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] gi|256588179|gb|ACU99065.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] Length = 535 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 149/420 (35%), Positives = 246/420 (58%), Gaps = 6/420 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q + N + +S+ + +SRG + + ++L E + +I EV SGLRGRGG Sbjct: 117 FFARQFPIVLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGG 176 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ + + Y++ NADE +PG DR I+ +PH ++EG IA +A+GA Sbjct: 177 GYPTGVKWATVAKMPT-QQKYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGA 235 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY+R E+ + L+ A+ + GL+G +D I + GAGA++CGEETA Sbjct: 236 NHGYIYIRAEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRVGAGAFVCGEETA 295 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P +PP+PA GL+G PT +NNVE+ A + I+R G +WY+ G E ++ Sbjct: 296 LMASVEGKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGNWYASIGTEKSK 355 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V +E M T E++E+ GG+ + + AV GG S C+P Sbjct: 356 GTKVFALTGKVKNIGLIEVPMGTTIREIVEEIGGGV-SDGEKVKAVQTGGPSGGCIP-EY 413 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++YD L+++G+ +G+ +IVMD ST +++ F + ESCG+C PCR GT Sbjct: 414 LFDTPVEYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQ 473 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ +LV+G A R++ L + + ++ ++C LG A P+ + FR I Sbjct: 474 LYNLLTKLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFRDEYLALIQ 533 >gi|15679545|ref|NP_276662.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter thermautotrophicus str. Delta H] gi|2622670|gb|AAB86023.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter thermautotrophicus str. Delta H] Length = 630 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 158/425 (37%), Positives = 245/425 (57%), Gaps = 8/425 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 + Q RI + +++ ++ G + + + LE D +I EVK SGLRGRGGAG Sbjct: 128 FMEGQSRRILRRCGLIDPENMGHYLATGGYRGLMRALEMEPDEVIEEVKDSGLRGRGGAG 187 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +KWS + S+ YL+ NADE +PG +R ++ +PH L+EG +IAS+A+GA Sbjct: 188 FPTWLKWSLCRQEASE-VKYLICNADEGDPGAFMNRSLIEGDPHALLEGILIASYAVGAR 246 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY R E+ E L+ A+ + GLLG + G+D+DI + GAGA++CGEETAL Sbjct: 247 EAYIYCRAEYPLALERLRVAISDLRNLGLLGKDILGSGFDLDIKIKEGAGAFVCGEETAL 306 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR +PPFP GL+G PT +NNVE++A V I++ GA +++ G +RG Sbjct: 307 ISSIEGKRGMPRTRPPFPTTRGLWGKPTVINNVETLAAVSMIMQHGADYFNSLGTPESRG 366 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK FS+ G V +E + T E+I GG+ G L AV GG S CLPA + Sbjct: 367 TKTFSLVGDVRRTGLIEVPLGTTLREVIFDIGGGVVDGE--LKAVQIGGPSGGCLPAE-L 423 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L G+ +G+ ++V+ T +++ F + ESCG+C PCR GT M Sbjct: 424 IDTGIDYDSLTSAGAIMGSGGLVVLSDRTCMVELARYFLEFTQRESCGKCVPCRVGTRQM 483 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ +V+G + + D+L +V++++ ++C LG + P+ ++ F + I Sbjct: 484 LMILNDIVEGSGRPEDPDILRDVAESVRAASLCGLGQTSPNPVLTTLRYFEDEYHDHIK- 542 Query: 419 YHRCN 423 RC Sbjct: 543 -GRCT 546 >gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 617 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 165/422 (39%), Positives = 242/422 (57%), Gaps = 6/422 (1%) Query: 4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q R + + L +S+ D ++ G ++ ++K L+ R II+EVK SGLRGRGG GF T Sbjct: 135 KQVRSVTSRLGRTNPESIEDYIATGGYEGIEKALKMDRQAIIDEVKKSGLRGRGGGGFPT 194 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW F+ D Y V NADE +PG DR ++ +PH ++EG +IA +AIGA + Sbjct: 195 GNKWQFVYNAPGD-KKYAVCNADEGDPGAFMDRSVLEGDPHAVLEGMMIAGYAIGADEGY 253 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY R E+ L A+ + GLLG N G+ I + GAGA++CGEETALL S Sbjct: 254 IYCRAEYPLAIRRLNLAIAQAEQLGLLGDNILDSGFSFRIKIKAGAGAFVCGEETALLNS 313 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR++PPFPA+ GL+ PT +NNVE+ A VP I+R+G WY+ G E ++G+K+ Sbjct: 314 IEGKRGMPRVRPPFPAHKGLWEKPTVLNNVETYANVPFIIRKGGDWYAAMGTEKSKGSKV 373 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G VN +E M IT + + GG G AV GG S CLP ++ Sbjct: 374 FCLTGKVNNTGLLEVPMGITLRD-VIFSIGGGIQGGKKFKAVQSGGPSGGCLPEEKL-DL 431 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ L G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT M+ + Sbjct: 432 PVDYESLTAAGAIMGSGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKRMLEL 491 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + ++ G + +ID L +++ I+ +C LG PI ++ FR E I R Sbjct: 492 LGKICDGRGELEDIDTLERLARVIKNSALCGLGQTCPNPILTTLRYFRHEYEAHIVD-KR 550 Query: 422 CN 423 C Sbjct: 551 CP 552 >gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 613 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 161/422 (38%), Positives = 245/422 (58%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 Q + +N + +S+ +S+G + V +L + +I+EVK SGLRGRGG GF Sbjct: 131 KQQKLVLSNCGEINPESIEAYISKGGYQAVGNVLTKMKPQEVIDEVKNSGLRGRGGGGFL 190 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW + Y++ NADE +PG D I+ +PH +IEG +IA+++IG+ Sbjct: 191 TGLKWQL-ARDSIGVKKYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQG 249 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ + L+ A+D+ G LG + +I + GAGA++CGEETAL+ Sbjct: 250 YIYVRAEYPLAIKRLEKAIDQAKQYGFLGKEMFGEVFSFNIEIKVGAGAFVCGEETALIA 309 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G PR KPPFPA GL+G PT +NNVE+ A +P I+ RGA ++ G + ++GTK Sbjct: 310 SIEGKRGMPRSKPPFPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTK 369 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS++G + VE M I+ E+I GG+ AV GG S CL ++ Sbjct: 370 VFSLTGKIENTGLVEVPMGISMKEIIYDIGGGVPNNRK-FKAVQIGGPSGGCLTEEKL-D 427 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DYD L ++G+ +G+ ++VMD ++ F ESCG+CTPC EGT M+ Sbjct: 428 LPVDYDSLLQVGAIMGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLE 487 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++E++V G A+ ++D L ++K I+ +C LG AA PI +K FR EE I +Y Sbjct: 488 ILEKIVNGRAKIEDLDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYK 546 Query: 421 RC 422 +C Sbjct: 547 KC 548 >gi|254375044|ref|ZP_04990524.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548] gi|151572762|gb|EDN38416.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548] Length = 424 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419 >gi|307297602|ref|ZP_07577408.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2] gi|306916862|gb|EFN47244.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2] Length = 540 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 163/411 (39%), Positives = 246/411 (59%), Gaps = 4/411 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N + ++L + ++ + + K L + +I E+K S LRGRGGAGF TG+KW Sbjct: 114 VLRNAGSIDPRNLEEYIALDGYQGLAKALRMTPEEVIEELKKSNLRGRGGAGFPTGLKWE 173 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F KV SD +++ NADE EPGT KDR IM +PH++IEG VIA +A+GA +IY+RG Sbjct: 174 FTQKVRSD-EKFVICNADEGEPGTFKDRLIMEGDPHSVIEGMVIAGYAVGASKGYIYIRG 232 Query: 128 EFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ SL+ A+ + Y GLLG S + D+ V GAGAY+CGEETAL+ES+EGK Sbjct: 233 EYFESVSSLRDAISKAYEYGLLGQSVLGTEFSFDLSVRLGAGAYVCGEETALIESIEGKS 292 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PRLKPP+P GLYG PT VNNVE+ A VP I+ +GA W+ G +++ GTK+FS+ G Sbjct: 293 GRPRLKPPYPPVSGLYGKPTVVNNVETFACVPPIIDKGAGWFRSIGTQSSPGTKVFSLCG 352 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + VE M + +L+ K GGI G L V GG++ + +M A +D+D Sbjct: 353 DLVKRGIVEVPMGTSVRDLVHKFGGGIPKG-RTLKMVQTGGAAGTFIKPEEM-DAELDFD 410 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 K+ G+ LG+ ++ +D + + L F+ HESCG+C+PCREGT ++ +++ Sbjct: 411 SFKKSGASLGSGVILAIDETHCAVDIAKNLMEFFAHESCGKCSPCREGTRVIVYILDEFS 470 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 KG + LY++S+ +E + C LG + P++ ++ F+ ++ Sbjct: 471 KGRGTVEMFNQLYDISETMEESSFCGLGQSVPIPLRSILDRFKDEFLSHLN 521 >gi|206602824|gb|EDZ39305.1| NADH dehydrogenase, subunit F [Leptospirillum sp. Group II '5-way CG'] Length = 1048 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 149/425 (35%), Positives = 235/425 (55%), Gaps = 8/425 (1%) Query: 2 LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 Q +I + S+ D + G + + ++ + D +I+ + SGLRGRGGAG Sbjct: 116 FRKQVKIVSKRCGVIDPSSIDDYLKTGGYSALKAVIAGETPDSVIDTLIRSGLRGRGGAG 175 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-A 118 F TGMKW F + D Y+V NADE +PG DR ++ +PH++IEG +I +FAIG A Sbjct: 176 FPTGMKWKFTRQAQGD-VKYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ L+ A+ + G LG + + GAGAY+CGEETA Sbjct: 235 RQGYIYCRAEYPHAIRLLKKAIAQAMERGYLGERILGSDLSFHLEIKEGAGAYVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G +G P KPPFPA G++ PT +NNVE++A +P I+ GA W++ +G E + Sbjct: 295 LLASIMGDRGMPWPKPPFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G + +E + T E++ + GG+ G A GG S C+P Sbjct: 355 GTKTFALTGKIKRTGLIEVAAGTTLKEIVYEIAGGMSGQ-KKFKAAQLGGPSGGCIPVD- 412 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L G+ +G+ +IV+D + I+ F K ESCG+CTPCR+GT Sbjct: 413 LIDTPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKV 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++R+ G + +++D L +S ++ ++C LG AA P+ I+ FR E+ I Sbjct: 473 MLDMIQRISDGRGEMKDMDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIK 532 Query: 418 QYHRC 422 + +C Sbjct: 533 R-KKC 536 >gi|327295324|ref|XP_003232357.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS 118892] gi|326465529|gb|EGD90982.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton rubrum CBS 118892] Length = 511 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 253/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF NLYG L +M G W +I+ KG DW F Sbjct: 85 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWS----------------FM 128 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W K P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++ A+ A A Sbjct: 129 NFKDWDKDTK-----PRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E LQ A++E YA+GL+G N+ GYD D+ +H G GAYICGEETAL+E Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W++GFGRE N+GTK Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELI++HCGG+RGGWDNLLAVIPGGSS P LP Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D LK+ SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++ Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +MER +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483 Query: 421 RCN 423 + N Sbjct: 484 QAN 486 >gi|304389071|ref|ZP_07371115.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC 13091] gi|304336944|gb|EFM03134.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC 13091] Length = 433 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 259/406 (63%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ + HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|222053575|ref|YP_002535937.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562864|gb|ACM18836.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 593 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 167/426 (39%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q R+ + + SL + + ++K ++ +I+EVK SGLRGRGG Sbjct: 109 FVDQQMRVVMSGCGQIDPDSLQAYLEEDGFKAIEKCIKTMKPAEVIDEVKKSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKWSF D YL+ NADE +PG DR ++ +P +IEG ++A++AIG Sbjct: 169 GFPTGMKWSFCAASPGD-KKYLICNADEGDPGAFMDRSVLEGDPFCIIEGMMVAAYAIGC 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + LQ A+D CY G LG N G+D D+ + GAGA++CGEETA Sbjct: 228 YYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDMRIKMGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ +GA WY+ G + + Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIINKGADWYASLGTDTTK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE ++ ++I CGGI AV GG S C+PA Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRQVIYDVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTRMESCGKCVPCRIGLKA 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ V+ER+ +G Q +ID L E+ I+ ++C LG A PI IK FR E I+ Sbjct: 466 MLDVLERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPILSTIKYFRHEYEAHIN 525 Query: 418 QYHRCN 423 RC Sbjct: 526 D-KRCP 530 >gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA] gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA] gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400] Length = 591 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 168/426 (39%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 + Q R+ T + +SL + + ++K + E +I+EVK SGLRGRGG Sbjct: 107 FVDQQMRVVMTGCGQIDPESLDAYLEEDGFKAIEKCVKEMTPAAVIDEVKKSGLRGRGGG 166 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKWSF + Y++ NADE +PG DR I+ +P+ +IEG +IA++AIG Sbjct: 167 GFPTGMKWSFCA-ATPGKLKYVICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGC 225 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ E LQ A+D CY G LG N G+D D+ + GAGA++CGEETA Sbjct: 226 TAGYVYVRAEYPLAIERLQKALDVCYEKGYLGKNVMGWGFDFDLRIKKGAGAFVCGEETA 285 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ +GA WY+ G + + Sbjct: 286 LMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIILKGADWYASLGTDTTK 345 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE ++ E+I CGGI AV GG S C+P+ Sbjct: 346 GTKIFAVTGKVKHTGLVEVPAGMSVREVIYNVCGGIANNRK-FKAVQAGGPSGGCIPSEV 404 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G Sbjct: 405 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTRMESCGKCVPCRIGLKA 463 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G Q +I+ L E+ I+ ++C LG A PI IK FR E I+ Sbjct: 464 MLDILERITEGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIKYFREEYEAHIN 523 Query: 418 QYHRCN 423 RC Sbjct: 524 D-RRCP 528 >gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] Length = 595 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 236/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + ++K L E + II E+K +GLRGRGGA Sbjct: 109 FYQKQFRIVLRNCGFIDPENIDEYIAREGYQGLEKALFEMTGEEIIEELKTAGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T MKW+F +V +D Y+V NADE +PG DR +PH+++E I IGA Sbjct: 169 GFPTWMKWNFSRQVQND-TKYVVCNADEGDPGAYMDRSTCEGDPHSVLEAMTICGKTIGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIY+R E+ L+ A+ + GLLG N G+D DI + GAGA++CGEETA Sbjct: 228 NQGFIYIRAEYPLAIHRLEIAMKQAREYGLLGKNILGSGFDFDIEIRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+S+EGK+G P+ +PPFPA GL+G PT +NNVE+ A VP IL +G +W++ G +++ Sbjct: 288 LLQSIEGKRGMPQPRPPFPAVKGLWGKPTVINNVETWANVPVILTKGGNWFNKIGTADSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M T E+I GGI AV GG S + A Sbjct: 348 GTKVFALTGKIRNSGLVEVPMGTTLREIIYDIGGGIAHD-KKFKAVQTGGPSGGVITAEN 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+ L +GS +G+ +IVMD I+ F ESCG+C PCR G Sbjct: 407 L-DTPIDFGSLIRIGSMMGSGGMIVMDEDDCIVDVAKFYLNFSVDESCGKCAPCRIGGKS 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++E++ G +++D L + + ++ ++CALG P+ IK+F+ I Sbjct: 466 LCNILEKITAGNGTLKDLDTLANIGEAMKKGSLCALGQTTPNPVLSSIKHFKEEYLAHIV 525 Query: 418 QYHRCN 423 C Sbjct: 526 D-KTCP 530 >gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 597 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 250/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI N + S+++ ++RG + + K+L ++NE+K SGLRGRGG Sbjct: 111 LFRKQHRIALRNCGMMDPDSVNEYIARGGYSGLAKMLDTMQPAEVVNEIKESGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW F K S Y++ NADE +PG DR ++ +PH+++EG +IA +AIGA Sbjct: 171 GFPTATKWEFCSKAKS-NKKYIICNADEGDPGAFMDRSLLEGDPHSVLEGMIIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++Y+R E+ + ++ A+++ GLLG N G+++++ + GAGA++CGEETA Sbjct: 230 DEGYLYIRAEYPLAIKRIRNAINQAKELGLLGENILGSGFNMELKIKEGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE++A +P I+ +GA ++ G + ++ Sbjct: 290 LIASIEGERGVPRSRPPFPAIKGLFGKPTIINNVETLANIPYIIDQGAQTFASVGTDKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M I+ E++ + GG AV GG S CLP + Sbjct: 350 GTKVFALTGKVKNSGLVEVPMGISVREIVYEIGGGT-FEGKKFKAVQTGGPSGGCLPESK 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L G+ +G+ ++VMD + +I F + ESCG+CTPCREGT Sbjct: 409 L-DLPIDYDSLASAGTIMGSGGLVVMDEDSCMIDVAKYFLTFTRKESCGKCTPCREGTMR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++E++ G + ++D L ++K I+ +C LG A PI ++ FR E I Sbjct: 468 LLEMLEKITAGEGEMADLDRLERLAKTIKTSALCGLGQTAPNPILSTLQYFRKEYETHIK 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|325203363|gb|ADY98816.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M01-240355] Length = 433 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLGEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ + HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC 27021] Length = 624 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ + + S+ + ++ + +K+L + D +I E++ S LRGRGG Sbjct: 138 FYKKQTRLALEHCGHIDATSIEEYLAIDGYSAFEKVLFDMKADEVIKEIEESNLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + + + Y+V N DE +PG DR IM +PH ++EG +IA A GA Sbjct: 198 GFPAGRKWSQVSRQKEEI-RYIVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGVACGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L A+++ G+LG N G+ D+ ++ GAGA++CGE +A Sbjct: 257 QKGYIYVRAEYPLAVSRLSNAIEQARKYGILGENILGTGFSFDLQINRGAGAFVCGEGSA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+G PT +NNVE+ A VP ++ +GA WY G EN+ Sbjct: 317 LTASIEGKRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPIVINKGAEWYRSIGPENSP 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G++ +E M T E+I GGIR AV GG S CL A Sbjct: 377 GTKAFALTGNIENTGLIEVPMGTTLREVIFDIGGGIR-DGKRFKAVQIGGPSGGCLTAEH 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+ G+ +G+ ++VMD T +++ F K+ESCG+C PCREGT Sbjct: 436 L-DLPLDFDSLKKAGAMIGSGGLVVMDEDTCMVEVARFFMNFTKNESCGKCVPCREGTKR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E +V G + ++D+L E++ I +C LG A P+ IKNF+ + I Sbjct: 495 MLVILEGIVAGKGKLEDMDMLLELADTISATALCGLGKTAPSPVVSTIKNFKDEYIKHIV 554 Query: 418 QYHRCN 423 +C Sbjct: 555 D-KKCP 559 >gi|91782617|ref|YP_557823.1| putative NADH dehydrogenase I (chain F), NuoF [Burkholderia xenovorans LB400] gi|91686571|gb|ABE29771.1| NADH dehydrogenase subunit F [Burkholderia xenovorans LB400] Length = 442 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 AGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] Length = 628 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + +++ D ++ G + + + L E + +I EVK S LRGRGG Sbjct: 131 FYKYQMRHLIKNNIKINPRNIEDYIALGGYSALARALSEMTPEEVIEEVKRSNLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + P Y++VN DE +PG DR +M PH+++EG +IA++A+G+ Sbjct: 191 GFPTGRKWKSTREAPGE-PKYVIVNCDEGDPGAFMDRALMEGNPHSVLEGLIIAAYAMGS 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H FIYVR E+ ++ A+ + GLLG N G+D D+ +H GAG+++ GE TA Sbjct: 250 HKGFIYVRMEYPLAVQNATLALQQAREYGLLGENILGTGFDFDVSIHRGAGSFVSGESTA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ +LEG G+PR K + GL+G P+ +NNVE+ A VP I+ GA W++ G E ++ Sbjct: 310 LMNALEGWVGEPRPKYVHTSQKGLWGRPSALNNVETFANVPLIIEHGAKWFNSIGTERSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G VN VE M +T ++I K GGI G L V GG S +PA Sbjct: 370 GTKIFSLVGKVNNTGLVEVPMGMTLADIIYKIGGGIPGN-KKLKGVQTGGPSGGIIPARY 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +GS +G+ ++IV+D T + F ESCG+C PCREG Sbjct: 429 L-NTPVDFDELTSLGSMMGSGSIIVIDEDTCAVDLARYFVDFLCSESCGKCLPCREGLKR 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++ + G + +I L E+++ + ++CALG A P+ I+ FR + I Sbjct: 488 MREILDAIESGRGTETDIQTLQEIAELMRTASLCALGRTAVNPVLSTIRYFREEYDAHIK 547 Query: 418 QYHRCN 423 RC Sbjct: 548 D-KRCP 552 >gi|307730335|ref|YP_003907559.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1003] gi|307584870|gb|ADN58268.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1003] Length = 442 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 271/416 (65%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F +L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFAKLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 369 IEHGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] Length = 595 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + +++ L + + IINE+K +GLRGRGGA Sbjct: 109 FYQKQFRIVLRNCGVINPENIDEYIARDGYKALERALFDMKPEDIINELKTAGLRGRGGA 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T MKW+F + D Y+V NADE +PG DR + +PH++IE IA A+GA Sbjct: 169 GFPTWMKWNFTKQAAGD-VKYIVCNADEGDPGAYMDRSTLEGDPHSIIEAMTIAGIAVGA 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IY+R E+ + LQ A+++ GLLG + G+D DI + GAGA++CGEETA Sbjct: 228 HQGYIYIRAEYPLAIKRLQIAMEQSRGYGLLGKDILGSGFDFDIEIRLGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G P+ +PPFPA GL+GCPT +NNVE+ A VP I+ RG W++ G E+++ Sbjct: 288 LLASIEGERGMPKPRPPFPATKGLWGCPTVINNVETWANVPVIISRGGDWFAKIGTEDSK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M T E++ GGI G AV GG S + A Sbjct: 348 GTKVFALTGKIRNSGLVEVPMGTTLREIVYDIGGGIPGN-KAFKAVQTGGPSGGVITADY 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY L+++GS +G+ +IVMD I+ F ESCG+C PCR G Sbjct: 407 L-DTPIDYSQLQKLGSIMGSGGMIVMDEDDCIVDVAKFYLGFTVEESCGKCAPCRVGGRT 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++R+ KG + +I+ L + K ++ ++C LG + P+ + F + I Sbjct: 466 LYNILDRITKGEGEMEDIERLKTIGKAMQKASLCGLGQTSPNPVMSTLHYFEDEYKAHIK 525 Query: 418 QYHRCN 423 RC Sbjct: 526 D-KRCP 530 >gi|209518510|ref|ZP_03267331.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160] gi|209501055|gb|EEA01090.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160] Length = 442 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A++E +G LG N G+ + HHG GAYICGEETALLES+EG Sbjct: 131 HGEIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDMMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ ++ ++DLL V++NI GRTICALGDAAA P++G++K+F E + H Sbjct: 369 IEHGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHFWDEFEYHVAHKH 424 >gi|269469173|gb|EEZ80715.1| NADH dehydrogenase I chain F [uncultured SUP05 cluster bacterium] Length = 422 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 216/415 (52%), Positives = 271/415 (65%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 F L + SL + G + KIL E D II+E+K SGLRGRGGAGF TG+KW Sbjct: 6 FKTLDQKKSWSLKTYEANGGYSVWRKILKGELTPDQIIDELKTSGLRGRGGAGFPTGLKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ D Y+V N+DE EPGTCKDRDI+R PH++IEG I F + A + Y+R Sbjct: 66 SFMPRNA-DMQKYVVCNSDEGEPGTCKDRDILRFNPHSVIEGMAIGGFVMNATKGYNYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF+ + A+ E Y +GLLG N K D+ H GAGAYICGEETALLESLEGK Sbjct: 125 GEFMEPFYRFEGALKEAYKAGLLGENIDKSSISFDLYAHLGAGAYICGEETALLESLEGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPAN+GLYG PTT+NN ES A VP IL +G W++ G EN+ G KLFS++ Sbjct: 185 KGQPRFKPPFPANIGLYGKPTTINNTESFASVPEILAQGGQWFADIGVENSGGCKLFSVT 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHVN P E M +F +L++ G L AVIPGGSS P L A G MDY Sbjct: 245 GHVNKPSNFEVPMGTSFKDLLKMAGG--IRKGRKLKAVIPGGSSTPVLTADVAMGMTMDY 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DG+++ GS LG +VIVMD +T +++ + RL+ FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 303 DGIEKAGSMLGAGSVIVMDDTTCMVETLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G + +IDLL V + I G TICALGDAAA P++ ++NFR E I+ Sbjct: 363 MDGNGKADDIDLLLGVQEKIIGNTICALGDAAAMPVESFLRNFREEFEYYIEHGK 417 >gi|296160634|ref|ZP_06843449.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1] gi|295889160|gb|EFG68963.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1] Length = 442 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A+DE +G LG N G+ ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 AGDVERPGNYEIPLGTPFATLMELAGG--VRGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ + ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 619 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R + + L +S+ D ++ G ++ ++KIL + +I+E+K SGLRGRGG Sbjct: 133 FYKMQVRTVTSRLGRTNPESIVDYIATGGYEGLEKILSGMTQQQVIDEIKTSGLRGRGGG 192 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKW F D Y+V NADE +PG DR ++ +PH+++EG +IA +AIGA Sbjct: 193 GFPTGMKWQFTHNSPGD-KKYIVCNADEGDPGAFMDRSVLEGDPHSVLEGMIIAGYAIGA 251 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L A+ + G+LG N G++ + + GAGA++CGEETA Sbjct: 252 DEGYIYVRAEYPLAIHRLNLAIAQAEEIGMLGENILDTGFNFKLRIKAGAGAFVCGEETA 311 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G PR++PPFPA GL+ PT +NNVE+ A VP I+R+G WY+ G E ++ Sbjct: 312 LLTSIEGNRGMPRVRPPFPAVKGLWEKPTNLNNVETYANVPFIIRKGGEWYASMGTEKSK 371 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G+K+F ++G + VE M I+ ++I K GGI+ AV GG S CLP + Sbjct: 372 GSKVFCLTGKIKNTGLVEVPMGISVRDIIYKVGGGIQDD-KKFKAVQAGGPSGGCLPEEK 430 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L G+ +G+ ++VMD +T ++ F + ESCG+CTPCREGT Sbjct: 431 L-DLPVDYDSLNAAGAIMGSGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKR 489 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ + R+ +G + +I+ L + + I +C LG A PI ++ F+ I+ Sbjct: 490 MLETLTRICEGTGKPEDIETLERMGRVITKTALCGLGQTCANPILSTMRYFKDEYLAHIN 549 Query: 418 QYHRCN 423 RC Sbjct: 550 D-KRCP 554 >gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F [Herminiimonas arsenicoxydans] gi|133738929|emb|CAL61976.1| NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I subunit F) (NDH-1 subunit F) [Herminiimonas arsenicoxydans] Length = 431 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 266/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L + + RG + ++ +IL D +I E+KAS LRGRGGAGF +G+K Sbjct: 13 ILAGLTG-DNWGLEEYVKRGGYASLKRILSEGMTSDQVIAEIKASTLRGRGGAGFPSGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMPK YLV N+DE EPGT KDRDI+R+ PH +IEG IA++A+G + Y+ Sbjct: 72 WSFMPKNYEG-QKYLVCNSDEGEPGTFKDRDILRYNPHAVIEGMAIAAYAMGVSVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E + A+++ A+G LG Y + HG GAYICGEETALLES+EG Sbjct: 131 HGEIFAEYARFEEALEQARAAGFLGDRILGSAYSFQLHAFHGYGAYICGEETALLESIEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA Y+ G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGADAYAAMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F EL++ G G L AVIPGGSSVP + M MD Sbjct: 251 SGDVENPGNYEIPLGTPFAELLKLAGG--VRGGKKLKAVIPGGSSVPVVKGDLMMATDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 309 YDSVAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G + ++D+L ++ NI+GRTICALGDAAA P++ +I NFR E I+ H Sbjct: 369 IENGQGRAEDLDMLNSIADNIQGRTICALGDAAAMPVRAMILNFREEFEYHIEHKH 424 >gi|297201628|ref|ZP_06919025.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] gi|297147935|gb|EDY55035.2| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] Length = 449 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 199/410 (48%), Positives = 257/410 (62%), Gaps = 6/410 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ + Sbjct: 30 SWTLDVYQRHEGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGK 88 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 PHYLVVNADESEPGTCKD ++ PH+LIEG +IA +AI + AFIY+RGE + L Sbjct: 89 PHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACYAIRSSHAFIYLRGEVVPVLRRL 148 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 +AV E YA+G LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 149 HSAVSEAYAAGYLGQNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 208 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY CPT VNNVESIA VP IL+RG W+ G E + G L+S+SGHV P E Sbjct: 209 PAVAGLYACPTVVNNVESIASVPAILQRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYE 268 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT +L+E G L PGGSS P + +DY+G+ GS L Sbjct: 269 APLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSML 325 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++ Sbjct: 326 GTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDL 385 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 386 DKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG-CPFD 434 >gi|160900607|ref|YP_001566189.1| NADH-quinone oxidoreductase subunit F [Delftia acidovorans SPH-1] gi|160366191|gb|ABX37804.1| NADH-quinone oxidoreductase, F subunit [Delftia acidovorans SPH-1] Length = 452 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 218/421 (51%), Positives = 277/421 (65%), Gaps = 11/421 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ +L G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF Sbjct: 30 IYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGFP 88 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ +LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G Sbjct: 89 TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISLG 147 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE E +AA++E A+G LG N + + HHG GAYICGEETALLE Sbjct: 148 YNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALLE 207 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GTK Sbjct: 208 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGTK 267 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG VN P E + F +L+E G L AVIPGGSS P LPA + Sbjct: 268 IFSVSGDVNLPGNYEVPLGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIME 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ R Sbjct: 326 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLWR 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ G + +I+LL VS NI GRTICALGDAAA P++ +IK+FR E +I Sbjct: 386 VVNRIEHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQNAS 445 Query: 421 R 421 + Sbjct: 446 K 446 >gi|91203919|emb|CAJ71572.1| similar to proton-translocating NADH dehydrogenase I, 51 kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis] Length = 616 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 147/418 (35%), Positives = 240/418 (57%), Gaps = 6/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I N + S+ + ++RG ++ + K+L+ + +I EV SGLRGRGG GFSTG KW Sbjct: 140 ILRNCGYIDPDSIEEYIARGGYEALKKVLKTMSPEQVIEEVSKSGLRGRGGGGFSTGNKW 199 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + K +D +++ NADE +PG DR ++ +PH ++EG +I +AIGA +IY+R Sbjct: 200 ASCAKYSTD-EKFVICNADEGDPGAFMDRSLLEGDPHAVLEGMIIGGYAIGATSGYIYIR 258 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ ++ +++ G LG N GY ++I + GAGA++CGE TAL S+EGK Sbjct: 259 AEYPLAVRRIKHTIEQAGKYGFLGENILGSGYSLNIYIKEGAGAFVCGESTALQYSIEGK 318 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PP GL+ PT +NNVE+ A VP ++ +GA WY+ G + ++GTK+FS++ Sbjct: 319 RGMPRTRPPQSVEAGLWDKPTVLNNVETFANVPLVMNKGAGWYAQMGTDKSKGTKIFSLT 378 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + +P VE M T +++ GGI AV GG S CLP + +DY Sbjct: 379 GKIKHPGLVEVPMGTTIRQIVFDIGGGIP-RKRRFKAVQIGGPSGGCLPES-LLDFPIDY 436 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L E+G+ +G+ + +V+D T +++ F ESCG+C PCR GT M+ ++ R+ Sbjct: 437 ESLLEIGAMMGSGSFVVVDDGTCMVEMARFFMDFCARESCGKCPPCRIGTTLMLDILTRI 496 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +G+ ++ +I +L E+ ++ ++C LG +A PI+ ++ F+ I C Sbjct: 497 TQGMGEEGDIAMLEEMCGEVKTMSLCGLGQSAPNPIKSTLRYFKDEYIAHIRD-KICP 553 >gi|308388466|gb|ADO30786.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha710] Length = 433 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 259/406 (63%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|30249732|ref|NP_841802.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas europaea ATCC 19718] gi|30180769|emb|CAD85683.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas europaea ATCC 19718] Length = 425 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 209/410 (50%), Positives = 270/410 (65%), Gaps = 7/410 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L + + R + + KIL + + +I+EVK S LRGRGGAGF TG+KWSFMPK Sbjct: 18 DNWRLKNYLKRDGYAALKKILSQKISPEAVIDEVKKSALRGRGGAGFPTGLKWSFMPKQY 77 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G + YV GE Sbjct: 78 TG-EKYLVCNSDEGEPGTFKDRDIMRYNPHILIEGMLIAAYAMGIRTGYNYVHGEIWDVY 136 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E ++ AV+E +G LG N G+ + HHG GAYICGEETALLES+EGKKGQPR K Sbjct: 137 ERMEEAVEEANVAGFLGDNILGSGFSFRLYNHHGYGAYICGEETALLESIEGKKGQPRFK 196 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPAN GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+SGHVN P Sbjct: 197 PPFPANFGLYGKPTTINNTETFASVPWIIRNGGERYLQLGKPNNGGTKIFSVSGHVNKPG 256 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E M F +L+E G G L IPGGSS+P LP M MDYD + + G Sbjct: 257 NYEVPMGTPFAKLLELAGGM--RGGRKLKGCIPGGSSMPVLPGDIMMETDMDYDSIAKAG 314 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVI+MD +T +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + Sbjct: 315 SMLGSGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRV 374 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++DLL ++ NI+GRTICALGDAAA P++ ++++FR I ++ +C Sbjct: 375 EDLDLLDNLADNIQGRTICALGDAAAMPVRAMLQHFRDEFVFHI-EHKKC 423 >gi|325267322|ref|ZP_08133984.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC 33394] gi|324981259|gb|EGC16909.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC 33394] Length = 433 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 208/418 (49%), Positives = 267/418 (63%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTG 63 IF ++ +L+ +RG + + KIL + +I+EVKASGLRGRGGAGF TG Sbjct: 9 IFKDVNTQDPNCWTLAAYQARGGYQALRKILSEKTPQNDVIDEVKASGLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSFMP+ Y+V N DE EPGT KDRDI+ + PH LIEG +IA +A+ A + Sbjct: 69 LKWSFMPRSLPG-AKYVVCNTDEGEPGTFKDRDIIMYNPHALIEGMIIAGYAMCAEAGYN 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+ GE + +AA+ E +GLLG N G+D ++ HHG GAYICGEETALLESL Sbjct: 128 YIHGEIFEGFQRFEAALKEAREAGLLGKNIMGSGFDFELFAHHGYGAYICGEETALLESL 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGKKGQPR KPPFPA+ GLYG PTT+NN E+++ +P I+R G ++ G E GTKLF Sbjct: 188 EGKKGQPRFKPPFPASFGLYGKPTTINNTETLSSIPFIIRDGGKTFADQGIEGAGGTKLF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 SISGHV P E + F +L+E G G L AVIPGGSS P LP M G Sbjct: 248 SISGHVERPGNYEVPLGTPFAKLLEMAGGM--RGGKKLKAVIPGGSSAPVLPGDIMMGLN 305 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + + GS LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ RV+ Sbjct: 306 MDYDSIAKAGSMLGSGAIIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRVV 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+ G + +++LL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 366 HRIASGKGRPDDLELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRAEFEHYIEHGK 423 >gi|148266249|ref|YP_001232955.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4] gi|146399749|gb|ABQ28382.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4] Length = 593 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 166/426 (38%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q R+ T + SL + + ++K ++ +I+EVK SGLRGRGG Sbjct: 109 FVDQQMRVVMTGCGQIDPDSLEAYLEEDGFKAIEKCIKTMKPAEVIDEVKKSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKWSF D YL+ NADE +PG DR ++ +P +IEG +I+++AIG Sbjct: 169 GFPTGMKWSFCAASPGD-KKYLICNADEGDPGAFMDRSVLEGDPFCIIEGMMISAYAIGC 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + LQ A+D CY G LG N G+D D+ + GAGA++CGEETA Sbjct: 228 YYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDMRIKMGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ +GA WY+ G + + Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIINKGADWYASLGTDTTK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE + ++ ++I CGGI AV GG S C+PA Sbjct: 348 GTKIFAVTGKVKHTGLVEVAAGMSVRQVIYDVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTRMESCGKCVPCRIGLKA 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G Q +ID L E+ I+ ++C LG A PI +K FR E I+ Sbjct: 466 MLDILERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRHEYEAHIN 525 Query: 418 QYHRCN 423 RC Sbjct: 526 D-KRCP 530 >gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Pelobacter carbinolicus DSM 2380] Length = 617 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 165/422 (39%), Positives = 243/422 (57%), Gaps = 6/422 (1%) Query: 4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q R + + L + + D ++ G + ++K L IIN+VK SGLRGRGG GF T Sbjct: 135 KQVRSVTSRLGRTNPERIEDYIATGGYAGLEKALTMEPQEIINQVKISGLRGRGGGGFPT 194 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW F+ D Y+V NADE +PG DR ++ +PH ++EG +IA +AIGA+ Sbjct: 195 GTKWQFVADAVGD-KKYIVCNADEGDPGAFMDRSVLEGDPHAIMEGMMIAGYAIGANEGV 253 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY R E+ + L A+ G+LG N ++ + + GAGA++CGEETALL S Sbjct: 254 IYCRAEYPLAIKRLNMAIAVAEEMGILGDNIMGTDFNFKLRIKAGAGAFVCGEETALLNS 313 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR++PPFPA+ GL+ PT +NNVE+ A +P I+R G WY+ G E ++G+K+ Sbjct: 314 IEGKRGMPRVRPPFPAHKGLWQKPTCLNNVETFANIPFIVRNGGDWYASMGTEKSKGSKV 373 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ++G +N E M IT E++ GGI AV GG S CLPA Q+ Sbjct: 374 FCLTGKINNTGLAEVPMGITLREVVFNIAGGIA-DGKKFKAVQSGGPSGGCLPAEQL-DL 431 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DYD L G+ +G+ ++VMD T ++ F + ESCG+CTPCREGT ++ + Sbjct: 432 PIDYDSLISGGAMMGSGGLVVMDEGTCMVDVAKFFLNFTQLESCGKCTPCREGTKRLLEI 491 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+ G+ +ID L ++K I+ +CALG A P+ ++ FR E I++ R Sbjct: 492 LERICDGLGVPEDIDTLERLAKTIKTSALCALGQTAPNPVLTTLRYFRNEYEAHINE-KR 550 Query: 422 CN 423 C Sbjct: 551 CP 552 >gi|157364371|ref|YP_001471138.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314975|gb|ABV34074.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 541 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 166/427 (38%), Positives = 256/427 (59%), Gaps = 10/427 (2%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 + RI N+ + K++ + ++R + + ++L E + +I+ VK SGLRGRGGAGF T Sbjct: 109 ETRIVLRNVGLIDPKNIDEYIARDGYFALHRVLKEMKPNQVIDWVKESGLRGRGGAGFPT 168 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW KV +D Y+V NADE EPGT KDR IM +PH++IE VI +A+GA + Sbjct: 169 GLKWDLTAKVQAD-QKYVVCNADEGEPGTFKDRLIMEGDPHSVIEAMVICGYAVGATKGY 227 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE+ E++Q A+ + Y G LG + G+D D++V GAGAYICGEETALLES Sbjct: 228 IYIRGEYYGSVENIQKAIKDAYEYGFLGKDIMGSGFDFDLVVRLGAGAYICGEETALLES 287 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK G+PRLKPP+P GL+G PT +NNVE+ A +P I++ W+ FG ++ GTK+ Sbjct: 288 IEGKSGRPRLKPPYPPTNGLFGKPTVINNVETFANIPPIIQNDPGWFKSFGTPSSPGTKV 347 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+ G+V VE M +T +LI + GG+ G L V GG++ + ++ Sbjct: 348 FSLVGNVVRRGIVEVPMGVTVRDLIYRFGGGL-VGGKQLYMVQTGGTAGTFVGVDKL-DV 405 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DYD K G +G+ ++ M T + +F++HESCG+CTPCREGT +++ Sbjct: 406 ALDYDSFKNHGVSIGSGVILAMSEDTCPVDVALNTMMFFEHESCGKCTPCREGTRLSVQI 465 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID---- 417 +ER+ KG ++ +++ L +++ + ++C LG + P+ ++ NF + Sbjct: 466 LERMSKGQGKEEDLETLRKIAIITQEASLCGLGQSINVPLLSILNNFEHDFLSHVGVEKC 525 Query: 418 QYHRCNF 424 + CNF Sbjct: 526 PHGVCNF 532 >gi|239627948|ref|ZP_04670979.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239518094|gb|EEQ57960.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 1032 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 160/424 (37%), Positives = 242/424 (57%), Gaps = 6/424 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N ++ SL +SR + + K L +++E+KASGLRGRGGA Sbjct: 131 FFQGQVRIALRNCGHMEYASLEAYISRDGYGALAKALCGMTPQDVVDEMKASGLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW K S D ++V NADE +PG DR I+ +PH++IEG ++ +AIG Sbjct: 191 GFPTGVKWEAGLKAVSEDGRKFMVCNADEGDPGAFMDRSILEGDPHSIIEGMMLGGYAIG 250 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A ++YVR E+ E L A+D+ +G+LG + G+ D+ + GAGA++CGEET Sbjct: 251 ASKGYVYVRAEYPIAVERLGNAIDQARKAGILGEDIMGSGFSFDLEIRIGAGAFVCGEET 310 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 +LL S+EGK+G+PR KPPFP GL+ PT +NNVE++A V I+ G+ WY GFG E + Sbjct: 311 SLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANVAPIILNGSGWYHGFGTEKS 370 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+F+++G + +E M ++ GG G A+ GG S CL Sbjct: 371 AGTKVFALAGDIVNAGIIEVPMGTVLGDI-IYRIGGGIIGGKRFKAIQSGGPSGGCLTRE 429 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ L ++G+ +G+ +IVM+ T ++ F ESCG+C PCR GT Sbjct: 430 HL-NTSVDYESLSKLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 488 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ +G + ++DLL E++K I+ +C LG A P+ ++ FR E I Sbjct: 489 RMLEILERITEGKGEPGDLDLLEELAKTIQQTAMCGLGQTAPNPVLSTLRYFRSEYEAHI 548 Query: 417 DQYH 420 + H Sbjct: 549 YEKH 552 >gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 630 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 148/425 (34%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + + + K++ E + +I E+ SGLRGRGG Sbjct: 145 FYKKQRRIALKNCGVIDPEDIKEYIGAKGYLALGKVINEMTPEDVIKEITDSGLRGRGGG 204 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS K D Y++ NADE +PG DR I+ +P+++IE IA +AIGA Sbjct: 205 GFPTGKKWSL-AKDSKDDIKYIICNADEGDPGAFMDRAILEGDPNSIIEAMAIAGYAIGA 263 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ + L A+++ G++G ++ D+ + +GAGA++CGEETA Sbjct: 264 SKGLIYIRAEYPLAVQRLMIAIEQAKEIGVIGEGILGSSFNFDVEIKYGAGAFVCGEETA 323 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P KPPFPA GL+ PT+VNNVE+ A + I+ G+ W+S G ++ Sbjct: 324 LVHSIEGCRGEPTTKPPFPAEKGLFNKPTSVNNVETFANITAIINNGSQWFSSIGTNTSK 383 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M I +E+I + GGI+ + AV GG S C+P Sbjct: 384 GTKVFALAGKIKNVGLVEVPMGIKLEEIIYEIGGGIKDNKE-FKAVQTGGPSGGCIP-SM 441 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 442 LLDLPIDYESLNAVGSMMGSGGMIVMDEDDCMVDIAKFYLEFIVDESCGKCTPCRVGNKR 501 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++V+G + +I L ++SK I+ +C LG A PI + F +D Sbjct: 502 LLEILNKIVEGKGTEDDIKKLKDLSKVIKDTALCGLGQTAPNPILSTMTYFMDEYNAHVD 561 Query: 418 QYHRC 422 + +C Sbjct: 562 E-KKC 565 >gi|183981493|ref|YP_001849784.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium marinum M] gi|183174819|gb|ACC39929.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium marinum M] Length = 448 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 208/420 (49%), Positives = 273/420 (65%), Gaps = 10/420 (2%) Query: 12 LYGLQG--KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 Y +L+ + ++K L G D +I VK SGLRGRGGAGFSTG KWSF+ Sbjct: 14 RYWDDPESWTLATYRRHDGYRALEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFI 73 Query: 70 PKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 P+ + PHYLVVNADESEPGTCKD +M PH L+EG +IA++AI A AFIYVR Sbjct: 74 PQGDAGPAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVR 133 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + LQ AV E YA+GLLG N G+D++++VH GAGAYICGEETALL+SLEG+ Sbjct: 134 GEVLPVLRRLQNAVAEAYAAGLLGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGR 193 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+S Sbjct: 194 RGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLS 253 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + IT EL+ + GGIR G L PGGSS P L + +DY Sbjct: 254 GHVTRPGQYEAPLGITLRELL-DYAGGIRAG-HQLKFWTPGGSSTPLLTDEHL-DVPLDY 310 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G+ +GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ RL Sbjct: 311 EGVGGVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARL 370 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + +ID L ++S +I G++ CALGD AA P+ IK+F+ ++Q C F Sbjct: 371 ETGKGTREDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFQDEYIAHVEQGG-CPFD 429 >gi|307304399|ref|ZP_07584150.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] gi|306902601|gb|EFN33195.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti BL225C] Length = 421 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 195/423 (46%), Positives = 267/423 (63%), Gaps = 6/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TG Sbjct: 3 EPVLLRNIDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++ Sbjct: 63 MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ ++ A+ E + +G LG G++ + +H GAGAYICGEETA+LESL Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGVSAPVIPEGELE-VG 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRC 418 Query: 423 NFQ 425 F Sbjct: 419 PFH 421 >gi|289523903|ref|ZP_06440757.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502559|gb|EFD23723.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 986 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 160/423 (37%), Positives = 243/423 (57%), Gaps = 7/423 (1%) Query: 4 DQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 +Q RI N + + + + ++R + + K L + +I EVK+S LRGRGG GF Sbjct: 57 NQTRILLRNCGLINPERIEEYIAREGYQGLAKALYKMSPQHVIEEVKSSNLRGRGGGGFP 116 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K ++ P Y++ NADE +PG DR ++ +PH LIEG +IA +AIGA Sbjct: 117 TGVKWDLTRKNPAE-PKYVICNADEGDPGAFMDRSLIEGDPHALIEGMLIAGYAIGAQKG 175 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY R E+ + L+ A+D+ GLLG ++ DI + GAGA++CGEETAL+ Sbjct: 176 FIYCRAEYPLAIQRLKIAIDQAKEYGLLGEGILGSNFNFDIEIKEGAGAFVCGEETALIA 235 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G+PR +PPFPA GL+G PT +NNV+S A VP I+ G W+S G E ++GT Sbjct: 236 SIEGRRGEPRPRPPFPAEKGLWGKPTNINNVKSYAFVPQIILNGHEWFSSIGTEKSKGTA 295 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G V +E M T E+I G+ AV GG CLP+ + Sbjct: 296 VFALTGKVKNTGLLEIPMGTTIGEIIFDVGEGVAKD-RQFKAVQTGGPLGGCLPSDAL-N 353 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L G+ +G+ +IV+D +T +++ F ESCGQCTPCR G M+ Sbjct: 354 LPVDFDSLTASGALMGSGGMIVVDETTCMVELARFFLQFAVAESCGQCTPCRVGGNKMLE 413 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ KG + ++D+L E++K ++ ++CALG A P+ ++ FR E I Sbjct: 414 ILMRITKGQGKMEDLDMLEEIAKFMKKASLCALGQGAPNPVLSTLRYFRDEYERHILDL- 472 Query: 421 RCN 423 RC Sbjct: 473 RCP 475 >gi|332184791|gb|AEE27045.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida 3523] Length = 424 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 212/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGGIR G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGIRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRDEFIYMIENNGR 419 >gi|326316104|ref|YP_004233776.1| NADH-quinone oxidoreductase subunit F [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372940|gb|ADX45209.1| NADH-quinone oxidoreductase, F subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 452 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 215/422 (50%), Positives = 275/422 (65%), Gaps = 11/422 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58 + +I+ L G S+ D +RG + + KIL +D +I VK SGLRGRGGA Sbjct: 26 EPQIYAGLDGTN-WSIKDYEARGGYQALRKILGTDGGEPMTQDQVIATVKESGLRGRGGA 84 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ YLV N+DE EPGTCKDRDI++ PH +IEG +IA+FA+G Sbjct: 85 GFPTGLKWSFMPRSFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGI 143 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+ GE + E + A++E A+G LG N + + HG GAYICGEETA Sbjct: 144 SVGYNYIHGEIFQTYERFEEALEEARAAGYLGDNILGSSFSFQLHAAHGFGAYICGEETA 203 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN Sbjct: 204 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNG 263 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+SG V P E + F +L+E G L AVIPGGSS P LPA Sbjct: 264 GTKIFSVSGDVEKPGNYEVPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASI 321 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW Sbjct: 322 IMECTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGW 381 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M RV++R+ G ++ ++DLL V+ NI+GRTICALGDAAA P++ +IK+FRP E I Sbjct: 382 MWRVIDRIQHGQGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIR 441 Query: 418 QY 419 Sbjct: 442 NK 443 >gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF + Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY R Sbjct: 256 SFT-RPLDVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EGK Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P VE IT ELI+ + GG+R G GG+S + + +D+ Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R+ Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|254373577|ref|ZP_04989063.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida GA99-3549] gi|151571301|gb|EDN36955.1| NADH dehydrogenase I [Francisella novicida GA99-3549] Length = 424 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 264/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D + +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETACMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419 >gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF + Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY R Sbjct: 256 SFT-RPLQVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EGK Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P VE IT ELI+ + GG+R G GG+S + + +D+ Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R+ Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 588 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 157/424 (37%), Positives = 239/424 (56%), Gaps = 5/424 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q+R+ N G + +++ + ++ G + + L + II E++A+ LRGRGG G Sbjct: 104 FYQKQERVVINRSGFIDPENIDEYLNSGGYQALQLGLTMEPEDIITEIQAANLRGRGGGG 163 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + K Y+V NADE +PG DR I+ +PH +IEG IA AIGA+ Sbjct: 164 FPTGLKWEYAKKGDEKTEKYVVCNADEGDPGAFMDRSILEGDPHVVIEGMAIAGLAIGAN 223 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 IYVR E+ + L+ A+ + G LG + DI + GAGA++CGEETAL Sbjct: 224 RGIIYVRAEYPLAVKRLEKAISQAKEYGYLGERVLGSNFSFDIEIKQGAGAFVCGEETAL 283 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ES+ G +G PR +PPFPA GLY PT +NNVE++A +P IL GA Y+ G ++++G Sbjct: 284 IESVHGNRGMPRPRPPFPAEKGLYDSPTILNNVETLANIPVILNWGAQKYNELGTKDSKG 343 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+I+G V E M I +LI GGI+ + AV GG S CLP + Sbjct: 344 TKVFAITGKVRNTGLCEVPMGIKLKDLIFDIGGGIKDDKE-FKAVQIGGPSGGCLPQESL 402 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 ++YD L + G+ +G+ ++VMD ST ++ F + ESCG+C PCREGT + Sbjct: 403 -DFPIEYDSLIDAGAMMGSGGLVVMDTSTCMVDLSRFFLNFTQSESCGKCNPCREGTKRL 461 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-D 417 + ++ R++ G + ++ +L + NI ++C LG +A P+ I+ F E I + Sbjct: 462 LEILNRIIDGYGENEDLKILNRLGNNIINTSLCGLGQSAPNPVLSTIRYFENEYLEHINN 521 Query: 418 QYHR 421 +Y R Sbjct: 522 KYCR 525 >gi|307318106|ref|ZP_07597542.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] gi|306896147|gb|EFN26897.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti AK83] Length = 421 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 194/423 (45%), Positives = 266/423 (62%), Gaps = 6/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TG Sbjct: 3 EPVLLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++ Sbjct: 63 MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ ++ A+ E + +G LG ++ + +H GAGAYICGEETA+LESL Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSDFNFMVHIHRGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVTRGSAWFRGIGPDRSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGISAPVIPEGELE-VS 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRC 418 Query: 423 NFQ 425 F Sbjct: 419 PFH 421 >gi|290958255|ref|YP_003489437.1| NADH dehydrogenase subunit NuoF [Streptomyces scabiei 87.22] gi|260647781|emb|CBG70886.1| NuoF, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 452 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 200/425 (47%), Positives = 258/425 (60%), Gaps = 15/425 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 D+DR SL ++ + K L D +I VK SGLRGRGGAGF Sbjct: 24 FWDEDR---------AWSLDVYRRHDGYEGLRKALAMSPDDVIAYVKESGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW F+P+ +PHYLVVNADESEPGTCKD ++ PH+L+EG +IA +AI + A Sbjct: 75 TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLVEGMIIACYAIRSSHA 133 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGE + L AV E Y +G LG N G D+DI VH GAGAYICGEETALL+ Sbjct: 134 FIYLRGEVVPVLRRLHEAVREAYEAGFLGENILGSGLDLDITVHAGAGAYICGEETALLD 193 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++GQPRL+PPFPA GLY CPT VNNVESIA VP IL +G W+ G E + G Sbjct: 194 SLEGRRGQPRLRPPFPAVEGLYACPTVVNNVESIASVPAILHKGKEWFRSMGSEKSPGFT 253 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHV P E + IT +L+E G L PGGSS P + Sbjct: 254 LYSLSGHVTSPGQYEAPLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 310 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+G+ GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++ Sbjct: 311 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 370 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ + G ++D L +++ NI G++ CALGD AA PI +K FR E+ I Sbjct: 371 LLRDIEAGKGVMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRAEYEDHITGRG 430 Query: 421 RCNFQ 425 C F Sbjct: 431 -CPFD 434 >gi|284034164|ref|YP_003384095.1| NADH-quinone oxidoreductase subunit F [Kribbella flavida DSM 17836] gi|283813457|gb|ADB35296.1| NADH-quinone oxidoreductase, F subunit [Kribbella flavida DSM 17836] Length = 433 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 201/412 (48%), Positives = 270/412 (65%), Gaps = 6/412 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ L+ G ++ + L ++ VK SGLRGRGGAGF TGMKWSF+P+ + Sbjct: 13 IRSWQLASYQRSGGYEALRTALRMQPADVVTAVKDSGLRGRGGAGFPTGMKWSFIPQD-N 71 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +P YLVVNADESEPGTCKD +M PHTL+EG +IAS+AI A AFIYVRGE + Sbjct: 72 PKPKYLVVNADESEPGTCKDIPLMLASPHTLVEGVIIASYAIRASTAFIYVRGEVLHVIR 131 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 LQ AV+E A+GL+G++ GYD+D+IVH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 132 RLQQAVEEAKAAGLIGTDILGSGYDLDVIVHAGAGAYICGEETALLDSLEGRRGQPRLRP 191 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLYGCPT +NNVESIA VP I++ GA W+ G E ++G L+S+SGHV P Sbjct: 192 PFPAVAGLYGCPTVINNVESIASVPAIIKNGADWFGSMGTEKSKGMTLYSLSGHVTRPGQ 251 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + IT +L++ G L PGGSS P L A + +DY+G+ +GS Sbjct: 252 YEAPLGITLRQLLDLAGG--VREGHELKFWTPGGSSTPLLTAEHL-DVPLDYEGVGSVGS 308 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+++++ERL G ++ Sbjct: 309 MLGTKALQIFDDTTCVVRAVLRWTEFYKHESCGKCTPCREGTWWLVQILERLEAGKGTEQ 368 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +++ L ++ NI GR+ CALGD A PI I+ F+ C F Sbjct: 369 DLETLLDLCDNILGRSFCALGDGATSPITSSIQYFKDEYLAHFTHGG-CPFD 419 >gi|293603924|ref|ZP_06686339.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii ATCC 43553] gi|292817761|gb|EFF76827.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii ATCC 43553] Length = 455 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 209/408 (51%), Positives = 261/408 (63%), Gaps = 7/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L D + RG ++ + KIL + +I EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 46 WRLEDYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YLV N+DE EPGT KDRDI+R PH +IEG IA+FA+G + Y+ GE E Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAFAMGISVGYNYIHGEIFEVYER 164 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A++E A+G LG + + HG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 165 FEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R Y G+ NN GTKLFSI+G V P Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNY 284 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F L+E G G L AVIPGGSS P LPA + MDYD + + GS Sbjct: 285 EIPLGTPFSTLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIIMECTMDYDSIAKAGSM 342 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPED 402 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +DLL V+ NI GRTICALGDAAA P++G +K+FR I ++ C Sbjct: 403 LDLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHI-EHKSC 449 >gi|317401993|gb|EFV82593.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54] Length = 455 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 208/408 (50%), Positives = 263/408 (64%), Gaps = 7/408 (1%) Query: 18 KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L+D + RG ++ + KIL + +I EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 46 WRLADYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YLV N+DE EPGT KDRDI+R PH +IEG IA++A+G + Y+ GE E Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYER 164 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A++E A+G LG ++ + HG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 165 FEEALEEARAAGFLGDRILGSEFNFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R Y G+ NN GTKLFSI+G V P Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNY 284 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + F L+E G G L AVIPGGSS P LPA M MDYD + + GS Sbjct: 285 EIPLGTPFSTLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIMMETTMDYDAIAKAGSM 342 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + + Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPED 402 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +D+L V+ NI GRTICALGDAAA P++G +K+FR I ++ C Sbjct: 403 LDMLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHI-EHKSC 449 >gi|114330930|ref|YP_747152.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas eutropha C91] gi|114307944|gb|ABI59187.1| NADH dehydrogenase subunit F [Nitrosomonas eutropha C91] Length = 425 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 208/410 (50%), Positives = 267/410 (65%), Gaps = 7/410 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 L + R + + KIL + + +I EVK S LRGRGGAGF TG+KWSFMPK Sbjct: 18 NNWRLKSYLKRDGYVALKKILSQKIPPEVVIEEVKKSALRGRGGAGFPTGLKWSFMPKQY 77 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G + YV GE Sbjct: 78 TG-EKYLVCNSDEGEPGTFKDRDIMRYNPHVLIEGMLIAAYAMGIRTGYNYVHGEIWDVY 136 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E ++ AV+E A+G LG N G+ + HHG GAYICGEETALLES+EGKKGQPR K Sbjct: 137 ERMEEAVEEANAAGFLGENILDSGFVFQLYNHHGYGAYICGEETALLESIEGKKGQPRFK 196 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPAN GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+SGHVN P Sbjct: 197 PPFPANFGLYGKPTTINNTETFASVPWIMRNGGESYLQLGKPNNGGTKIFSVSGHVNKPG 256 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E M F +L+E G G L IPGGSS+P LP M MDYD + + G Sbjct: 257 NYEVPMGTPFSKLLELAGGM--RGGRKLKGCIPGGSSMPVLPGSIMMETDMDYDSIAKAG 314 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVI+MD +T +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + Sbjct: 315 SMLGSGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRI 374 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++D+L ++ NI+GRTICALGDAAA P++ ++ +F I ++ +C Sbjct: 375 EDLDVLNNLADNIQGRTICALGDAAAMPVRAMLHHFWDEFVFHI-EHKKC 423 >gi|119489274|ref|ZP_01622081.1| hydrogenase subunit [Lyngbya sp. PCC 8106] gi|119454748|gb|EAW35893.1| hydrogenase subunit [Lyngbya sp. PCC 8106] Length = 538 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 243/417 (58%), Gaps = 7/417 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q + G + + + + +S G + + + E + +++E+ SGLRGRGGA Sbjct: 112 FFSRQMLVVREHSGKIDPEKIGEYLSVGGYQALHHAIYEMTPEDVVSEITKSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ Y++ NADE +PG DR ++ +PH ++EG IA +A+GA Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ LQ A+ + G+LG+ + + + GAGA++CGEETA Sbjct: 231 TQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQVFGSPVNFTVDIRVGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S++G +G PR +PP+PA GL+G PT +NNVE++A + I+R+GA W++ G E ++ Sbjct: 291 LIASIDGNRGVPRPRPPYPAVSGLWGEPTLINNVETLANIAPIIRKGADWFASIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M I+ E++E+ GG+ G + AV GG S C+P Sbjct: 351 GTKIFSLTGKIRNTGLIEVPMGISLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPV-H 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++GS +G+ ++VMD+ T +I+ F + ESCG+C PCR GT Sbjct: 408 LLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQVAQFYMDFCREESCGKCIPCRAGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M +++ +L+K A +++ L E+ + ++ ++C LG A PI + F E Sbjct: 468 MYQLLTKLIKKQATAADLEKLKELCEMVKATSLCGLGQTAPNPIVSTLHYFESEYTE 524 >gi|16263282|ref|NP_436075.1| NuoF2 NADH I chain F [Sinorhizobium meliloti 1021] gi|17380453|sp|P56913|NUOF2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 2; AltName: Full=NADH dehydrogenase I subunit F 2; AltName: Full=NDH-1 subunit F 2 gi|14523959|gb|AAK65487.1| NuoF2 NADH:quinone oxidoreductase (chain F) [Sinorhizobium meliloti 1021] Length = 421 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 195/423 (46%), Positives = 267/423 (63%), Gaps = 6/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TG Sbjct: 3 EPVLLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++ Sbjct: 63 MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ ++ A+ E + +G LG G++ + +H GAGAYICGEETA+LESL Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGVSAPVIPEGELE-VG 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRC 418 Query: 423 NFQ 425 F Sbjct: 419 PFH 421 >gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF + Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY R Sbjct: 256 SFT-RPLDVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EGK Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P VE IT ELI+ + GG+R G GG+S + + +D+ Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R+ Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|167627158|ref|YP_001677658.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597159|gb|ABZ87157.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 424 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+IMR+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNTPG-QKYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLGSN K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLYG PT +NN E+ A P IL+ G W+ G E + GTKLF IS Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV + +E + F +++E CGG+R G L AVIPGGSS L +M MDY Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLEM-CGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + E GS LG+ AV+V+D +T ++K + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ + Sbjct: 364 VAGEGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFREEFVYMIENGGK 419 >gi|297563972|ref|YP_003682945.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848421|gb|ADH70439.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 439 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 195/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + G + + K L D I++ VK SGLRGRGGAGF TGMKW F+P + Sbjct: 16 DSFTLEGYRATGGYGALRKALAMEPDAIVDLVKKSGLRGRGGAGFPTGMKWGFLP-ADNP 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YLVVNADESEPGTCKD +M PH L+EG IA++AI + AFIYVRGE + Sbjct: 75 NPRYLVVNADESEPGTCKDIPLMLANPHVLVEGVAIAAYAIKSSQAFIYVRGEVLHVIRR 134 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ AV E Y +GLLG + G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPP Sbjct: 135 LRRAVAEAYEAGLLGRDVLGTGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVESIA VP+I+ GA W++ G E + G FS+SGHV P Sbjct: 195 FPAVAGLYASPTVVNNVESIASVPSIVANGAEWFTSMGTEKSAGFGFFSLSGHVANPGQY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + +T EL++ G L PGGSS P + +D++ + GS Sbjct: 255 EAPLGVTLRELLDMSGGM--RPGHRLKFWTPGGSSTPIFTEEHL-DTPLDFESVGAAGSM 311 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T ++KA+ R FY HESCG+CTPCREG WM++V++RL G + + Sbjct: 312 LGTRALQIFDETTCVVKAVGRWIAFYAHESCGKCTPCREGNFWMVQVLDRLENGQGTEAD 371 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L ++ N+ GR+ CALGD A P+ IK+FR + +++ C F Sbjct: 372 LDKLLDICDNLLGRSFCALGDGATSPVTSSIKHFRQEYIDHVERGG-CPFD 421 >gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q+R + N + K++ D ++ G + + + L ++ EVK + LRGRGGA Sbjct: 131 FYRNQERNVICNNIKIDSKNIDDYLANGGYSALGEALGSMTPVEVLEEVKKANLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW + D Y++VNADE +PG DR ++ PH+++EG +I +AIGA Sbjct: 191 GFPAGVKWEG-SRNAPDPVKYVIVNADEGDPGAFMDRAVLEGNPHSVLEGLIIGGYAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E++ A+ + A GLLG N GY+ + V+ GAGA++CGE TA Sbjct: 250 QEGYIYVRHEYPLAVENITLAIQQAEACGLLGENIFGSGYNFRVFVNQGAGAFVCGESTA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG+ G+PR K VGL+G PT +NNVE+ A VP I+ +GA W++ G E+++ Sbjct: 310 LMTSIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINKGADWFTSIGTESSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G + VE M I+ +++ K GGI GG V GG S C+P Sbjct: 370 GTKIFSLVGKIANTGLVEVPMGISLRDIVFKIGGGIPGGKKFKA-VQTGGPSGGCIPES- 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +D L GS +G+ +IVMD T ++ F ESCG+C PCREG Sbjct: 428 LLDLPVGFDELTAAGSMMGSGGMIVMDEDTCMVDTARYFVKFLTDESCGKCVPCREGLRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ R+ +G + +I+LL +++ + ++CALG +A P ++ FR E I Sbjct: 488 MDNILTRITEGKGGEGDIELLEALAETAQEASLCALGKSAPNPFLSTLQYFRDEYEAHIK 547 Query: 418 QYHRCN 423 + RC Sbjct: 548 E-KRCP 552 >gi|5650749|emb|CAB51634.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 421 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 194/423 (45%), Positives = 266/423 (62%), Gaps = 6/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS + G + + K L E D I+ VK S LRGRGGAGF TG Sbjct: 3 EPVLLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++ Sbjct: 63 MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ ++ A+ E + +G LG ++ + +H GAGAYICGEETA+LESL Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGVGILGSKFNFMVHIHRGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I+ EL+E+H GG G + AVIPGG S P +P G++ Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGVSAPVIPEGELE-VG 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRC 418 Query: 423 NFQ 425 F Sbjct: 419 PFH 421 >gi|311897895|dbj|BAJ30303.1| putative NADH-quinone oxidoreductase subunit F [Kitasatospora setae KM-6054] Length = 453 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 205/412 (49%), Positives = 270/412 (65%), Gaps = 6/412 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + +L G +D + L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 23 HRPWTLDTYRRHGGYDGLAAALAMPPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQND- 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +PHYLVVNADESEPGTCKD ++ PH LIEG VIAS+AI AF+Y+RGE + Sbjct: 82 GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGMVIASYAIRCEHAFVYLRGEVVPVLR 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 LQAAV E YA+G LG + G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 142 RLQAAVAEAYAAGYLGKDIQGSGINLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY CPT VNNVESIA VP IL RG W++ G E + G L+S+SGHV P Sbjct: 202 PFPAIAGLYACPTVVNNVESIASVPPILARGKDWFTSLGTEKSPGFTLYSLSGHVTNPGQ 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + IT +L+E GG+R G L PGGSS P + +DY+G+ GS Sbjct: 262 YEAPLGITLRQLLE-ITGGVRAG-HRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 318 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ V D +T +++A+ R + FY HESCG+CTPCREGT W++++++R+ G Sbjct: 319 MLGTKALQVFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLKRIEAGQGAPG 378 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +++ L +++ NI G++ CALGD AA PI +++FR E+ +++ HRC F Sbjct: 379 DLEKLLDIADNINGKSFCALGDGAASPIVSSLQHFRAEYEQHLNE-HRCPFD 429 >gi|254368970|ref|ZP_04984983.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica FSC022] gi|157121891|gb|EDO66061.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica FSC022] Length = 424 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419 >gi|325131608|gb|EGC54315.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis M6190] Length = 433 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 199/406 (49%), Positives = 259/406 (63%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+++ A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + V I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCRE TGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCRESTGWLYRIVHRIVEGKGKM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|241667720|ref|ZP_04755298.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876264|ref|ZP_05248974.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842285|gb|EET20699.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 424 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+IMR+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNTPG-QKYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLGSN K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLYG PT +NN E+ A P IL+ G W+ G E + GTKLF IS Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV + +E + F +++E CGG+R G L AVIPGGSS L +M MDY Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLEM-CGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + E GS LG+ AV+V+D +T ++K + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ + Sbjct: 364 VAGDGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFREEFVYMIENGGK 419 >gi|89900291|ref|YP_522762.1| NADH-quinone oxidoreductase subunit F [Rhodoferax ferrireducens T118] gi|89345028|gb|ABD69231.1| NADH-quinone oxidoreductase, F subunit [Rhodoferax ferrireducens T118] Length = 458 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 213/430 (49%), Positives = 273/430 (63%), Gaps = 20/430 (4%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--------------KGRDWIINEVKASGLR 53 I+ +L G L D SRG + + KIL D +I VK SGLR Sbjct: 28 IYADLNGSN-WHLKDYESRGGYQALRKILAKNSGVTADDVTASGMTPDQVIAVVKESGLR 86 Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 GRGGAGF TG+KWSFMP+ + YLV N+DE EPGTCKDR+I++ PH +IEG +IA+ Sbjct: 87 GRGGAGFPTGLKWSFMPRQYAG-QKYLVCNSDEGEPGTCKDREILQFNPHMVIEGMIIAA 145 Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172 +A+G + Y+ GE + + A++E A+GLLG+N + + HG GAYIC Sbjct: 146 YAMGIAVGYNYIHGEIFKTYLRFEEAIEEARAAGLLGNNILGSDFSFQLHAAHGYGAYIC 205 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 GEET+LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G Sbjct: 206 GEETSLLESLEGKKGQPRYKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLACG 265 Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 + N+ GTK+FSISG V P E M F +L+E G L AVIPGGSS P Sbjct: 266 KPNSGGTKIFSISGDVELPGNYEVPMGTPFSQLLELAGG--VRSGRQLKAVIPGGSSSPV 323 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 LP M MDYD + + GS LG+ AVIV+D S ++K++ RLS FY HESCGQCTPCR Sbjct: 324 LPGSIMMDCTMDYDSIAKAGSMLGSGAVIVLDDSRCMVKSLQRLSYFYMHESCGQCTPCR 383 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGTGW+ RV++R+ G ++DLL V++NI GRTICALGDAAA P++ +IK+FRP Sbjct: 384 EGTGWLSRVVDRIENGHGHVTDLDLLDNVAENIMGRTICALGDAAAMPVRAMIKHFRPEF 443 Query: 413 EERIDQYHRC 422 E + ++ C Sbjct: 444 EYHV-EHKTC 452 >gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 633 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 156/424 (36%), Positives = 233/424 (54%), Gaps = 7/424 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q + N+ + ++DS++ G + + K L E + ++ EV+ SGLRGRGGAGF T Sbjct: 148 QQRVVLRNIGRIDPTDIADSIAIGSYQALAKALLEMTPEHVVREVEKSGLRGRGGAGFPT 207 Query: 63 GMKWSFMPKVCS--DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G KW P Y+V N DE +PG D +M +PH +IEG ++ +FA+GAH Sbjct: 208 GRKWRGAMAAAKKKGGPVYVVCNGDEGDPGAFMDCMVMEGDPHAVIEGMILGAFALGAHQ 267 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIYVR E+ + L A+D+ GLLG N G+ DI ++ GAGA++CGE TAL Sbjct: 268 GFIYVRAEYPVAIKHLTMAMDQARTLGLLGENILGSGFSFDIQINRGAGAFVCGESTALF 327 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK G+PR K A GL+G PT +NNVE+ A VP I+ G W++G G ++ GT Sbjct: 328 TSIEGKAGEPRPKYVRSAEEGLWGKPTVLNNVETWANVPQIIENGGQWFAGIGVPHSTGT 387 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+ G VN VE M + ++E GG+ G AV GG S CLP +R Sbjct: 388 KVFSLVGKVNNVGLVEVPMGVPLRTIVEDIGGGVP-GGKPFKAVQTGGPSGGCLP-YALR 445 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D L + GS +G+ +IVMD ++ F + ESCG+C PCR G + Sbjct: 446 DVAVDFDSLTKAGSMMGSGGMIVMDERDCVVDVARYFLRFLEEESCGKCLPCRLGVTRLR 505 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++ + G ++ +I+ + +S ++ ++CALG +A P+ +K FR I Sbjct: 506 EMLDEISAGRGKEEDIEAILSLSAAVKDGSLCALGGSAPNPVLTTLKYFRDEYLAHITD- 564 Query: 420 HRCN 423 +C Sbjct: 565 KKCP 568 >gi|264677203|ref|YP_003277109.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni CNB-2] gi|299530747|ref|ZP_07044162.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44] gi|262207715|gb|ACY31813.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni CNB-2] gi|298721263|gb|EFI62205.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44] Length = 454 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 217/421 (51%), Positives = 273/421 (64%), Gaps = 11/421 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ +L G S+ D +RG + + K+L K +D +I +K SGLRGRGGAGF Sbjct: 35 IYADLNGSN-WSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ +LV N+DE EPGTCKDRDI+ PH +IEG +IA+FA+G Sbjct: 94 TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISIG 152 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE E +AA++E A+G LG N + + HHG GAYICGEETALLE Sbjct: 153 YNYIHGEIFEVYERFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 212 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 213 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 272 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG VN P E M F +L+E G L AVIPGGSS P LPA + Sbjct: 273 IFSVSGDVNLPGNYEVPMGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIMD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+ R Sbjct: 331 CTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWLWR 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ G + +I+LL VS NI GRTICALGDAAA P++ +IK+FR E +I Sbjct: 391 VVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQNAS 450 Query: 421 R 421 + Sbjct: 451 K 451 >gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 625 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 151/425 (35%), Positives = 238/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI N +SL++ ++ G + ++K + E D +I++V SG+RGRGG Sbjct: 139 FIAKQTRIVLKNCGKFDAESLNEYIASGGFQALEKAMFEMDPDLVIDQVDKSGIRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + + D HY+V N DE +PG D +M +P+ LIEG ++A++A+ A Sbjct: 199 GFPAGKKWIQVARQA-DPVHYVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMMLAAYAVRA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ GLLG + G+ + ++ GAGA++CGE +A Sbjct: 258 QHGYIYVRAEYPQSVARLKHAIAVLEEVGLLGDDILGTGFSFHMHINRGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ A +P I+ +GA WY G E + Sbjct: 318 LTASIEGNRGMPRVKPPRTVEQGLWAKPTVLNNVETYANIPEIILKGADWYRSIGTEGSP 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M T E+I GG++ G AV GG S CL Sbjct: 378 GTKTFSLTGSIENTGLIEVPMGTTLREIIFDIGGGLKSGA-AFKAVQIGGPSGGCLTEEH 436 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D +K+ G+ +G+ ++VMD T +++ F + ESCG+C PCR GT Sbjct: 437 L-DVPLDFDSVKKYGAIVGSGGLVVMDEHTCMVEVARFFMGFTQRESCGKCGPCRIGTKR 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++D L + I+ R++C LG +A P+ ++NFR E I Sbjct: 496 MLEILERIVDGKGEVEDLDKLEHLGNFIKDRSLCGLGKSAPLPVLSTLRNFRDEYVEHIV 555 Query: 418 QYHRC 422 +C Sbjct: 556 D-KKC 559 >gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Pelobacter carbinolicus DSM 2380] Length = 486 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 148/425 (34%), Positives = 233/425 (54%), Gaps = 7/425 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 + Q RI T G + +S+ ++ G + + K L + +I +K SGLRGRGGAG Sbjct: 1 MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSKMKPADVIELMKNSGLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F K SD ++V NADE +PG DR ++ +PH+++E I ++AIG + Sbjct: 61 FPTGVKWGFAAKYESDI-KHVVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 IY+R E+ L+ A+++ G+LG N + D+ + +GAGA++CGEETAL Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNIMGTDFCFDLELKYGAGAFVCGEETAL 179 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG +G+P KPPFPA G + PT VNNVE++A +P I+ +GA W++ G E ++G Sbjct: 180 INSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSKG 239 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F I G + +E M T E+I GGI GG + AV GG S L + Sbjct: 240 TKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKDL 298 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A +DY+ L S +G+ +IVMD ++ F E+CG+CTPCR G+ + Sbjct: 299 -DAPIDYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRI 357 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++++ G + +++ L +S NI+ +C LG P+ ++ F + Sbjct: 358 YELLDKITIGQGTEEDLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFEDEYRAHVID 417 Query: 419 YHRCN 423 +C Sbjct: 418 -KKCP 421 >gi|89257085|ref|YP_514447.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica LVS] gi|115315442|ref|YP_764165.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|167009477|ref|ZP_02274408.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica FSC200] gi|169656768|ref|YP_001429364.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368321|ref|ZP_04984339.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica 257] gi|290952994|ref|ZP_06557615.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica URFT1] gi|295313814|ref|ZP_06804387.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica URFT1] gi|89144916|emb|CAJ80264.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica LVS] gi|115130341|gb|ABI83528.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134254129|gb|EBA53223.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. holarctica 257] gi|164551836|gb|ABU62408.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp. holarctica FTNF002-00] Length = 424 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVNMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T +++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419 >gi|150375769|ref|YP_001312365.1| NADH-quinone oxidoreductase subunit F [Sinorhizobium medicae WSM419] gi|150030316|gb|ABR62432.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae WSM419] Length = 421 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 191/423 (45%), Positives = 263/423 (62%), Gaps = 6/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS G + + K L E D I+ VK S LRGRGGAGF TG Sbjct: 3 EPVLLRNVDVPDGHLLSTYQVGGGYQALTKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++ Sbjct: 63 MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ ++ A+ + + +G LG+ + + +H GAGAYICGEETA+LESL Sbjct: 122 YIRGEYVTAIRRMEQAIAQAHENGYLGTGILGSNFKFMVHIHRGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG++W+ G G + + G KL+ Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I+ EL+E++ GG G + AVIPGG S P +P + Sbjct: 242 CVSGQVRKPGLYELPMGISLRELVEEYAGGPLPGRK-VKAVIPGGVSAPVIPESDLE-VG 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A V+V+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ Sbjct: 300 MDFDSLAAAGSMLGSAGVVVIDDSTCMVKIATRIIEFFHHESCGKCTPCREGLNWTVKVL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G + +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRC 418 Query: 423 NFQ 425 F Sbjct: 419 PFH 421 >gi|288942129|ref|YP_003444369.1| NADH-quinone oxidoreductase subunit F [Allochromatium vinosum DSM 180] gi|288897501|gb|ADC63337.1| NADH-quinone oxidoreductase, F subunit [Allochromatium vinosum DSM 180] Length = 427 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 217/427 (50%), Positives = 274/427 (64%), Gaps = 9/427 (2%) Query: 1 MLTDQDRIFTNLYGLQG---KSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGR 55 M+ Q+ + L +L+ G + ++IL + D +I EVK S LRGR Sbjct: 1 MVERQNTVCFRNQHLDPAIRHTLAAYRDLGGYAQWERILRERPDPADLIEEVKRSALRGR 60 Query: 56 GGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 GGAGF TG+KWSFMP+ Y+V N+DE EPGTCKDRDI+R+ PH LIEG IA + Sbjct: 61 GGAGFPTGLKWSFMPRQAPG-QKYIVCNSDEGEPGTCKDRDILRYNPHQLIEGMAIAGYC 119 Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174 IGA + Y+RGEF E + AV E YA+GLLG + G D D+ H GAGAYICGE Sbjct: 120 IGATVGYNYIRGEFYEPIERFEDAVREAYAAGLLGRDIQGSGVDFDLYAHMGAGAYICGE 179 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 ETALLES+EGKKGQPR KPPFPA VGLYG PTT+NN ES+A +P IL +G W+ GR Sbjct: 180 ETALLESIEGKKGQPRYKPPFPAQVGLYGRPTTINNTESLASIPVILEKGGQWFLEQGRP 239 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 NN G KLFS+SGHVN P E + F L+E G L AVIPGGSSVP +P Sbjct: 240 NNGGPKLFSVSGHVNAPNNFEVPLGTPFRALLEMAGG--VKDGRKLKAVIPGGSSVPVVP 297 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 M MDYD + + GS LG+ AVIV+ T ++K ++ LS FY HESCGQCTPCREG Sbjct: 298 GEIMMDVDMDYDSIAKAGSMLGSGAVIVIAEGTCMVKVLYNLSHFYMHESCGQCTPCREG 357 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 TGW+ RV++R++ G + +++LL V+ I G+TICALGDAAA P+Q +K++R Sbjct: 358 TGWLARVIKRILDGQGRAEDLELLDSVAGRIGGKTICALGDAAAMPVQSFLKHYRHEFAY 417 Query: 415 RIDQYHR 421 I+ HR Sbjct: 418 MIEHGHR 424 >gi|62261001|gb|AAX77952.1| unknown protein [synthetic construct] Length = 459 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 33 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 92 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 93 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 151 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 152 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 211 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 212 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 271 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 272 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 329 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 330 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 389 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 390 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 445 >gi|221068607|ref|ZP_03544712.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni KF-1] gi|220713630|gb|EED68998.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni KF-1] Length = 454 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 216/421 (51%), Positives = 273/421 (64%), Gaps = 11/421 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ +L G S+ D +RG + + K+L K +D +I +K SGLRGRGGAGF Sbjct: 35 IYADLNGSN-WSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGFP 93 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ +LV N+DE EPGTCKDRDI+ PH +IEG +IA+FA+G Sbjct: 94 TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISIG 152 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + +AA++E A+G LG N + + HHG GAYICGEETALLE Sbjct: 153 YNYIHGEIFEVYDRFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 212 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 213 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 272 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG VN P E M F +L+E G L AVIPGGSS P LPA + Sbjct: 273 IFSVSGDVNLPGNYEVPMGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIMD 330 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+ R Sbjct: 331 CTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWLWR 390 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ G + +I+LL VS NI GRTICALGDAAA P++ +IK+FR E +I Sbjct: 391 VVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQNAS 450 Query: 421 R 421 + Sbjct: 451 K 451 >gi|328884317|emb|CCA57556.1| NADH-ubiquinone oxidoreductase chain F [Streptomyces venezuelae ATCC 10712] Length = 449 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 198/411 (48%), Positives = 255/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 28 NSWTLETYERHEGYQGLRKALAMSPDALIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 86 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG +IA +AI + AFIY+RGE + Sbjct: 87 KPHYLVVNADESEPGTCKDIPLLYANPHSLIEGMIIACYAIRSEHAFIYLRGEVVPVLRR 146 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E YA+G LG N G +VDI VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 147 LHEAVREAYAAGYLGRNVLGSGLNVDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 206 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL RG W++ G E + G L+S+SGHV P Sbjct: 207 FPAVAGLYACPTVVNNVESIASVPAILNRGKEWFTSMGSEKSPGFTLYSLSGHVTSPGQY 266 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 267 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 323 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 324 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRSIENGTGTLAD 383 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 384 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG-CPFD 433 >gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 594 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q+R+ N + + + ++R ++ + K+L + ++ E+K SGLRGRGG Sbjct: 108 FYSKQERVALGNCGYIDADKIEEYIARDGYEALGKVLTSMTPEDVVEEMKTSGLRGRGGG 167 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSF K Y++ NADE +PG DR I+ +PH++IEG +I ++A+GA Sbjct: 168 GFPTGLKWSFCAKSPGP-KKYVICNADEGDPGAFMDRSILEGDPHSIIEGMMIGAYAMGA 226 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + L+ A+D+ GLLG N + + V GAGA++CGEETA Sbjct: 227 DEGYIYCRAEYPLAIKRLKRAIDQAEEYGLLGENVLGTDFSFSLHVKEGAGAFVCGEETA 286 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A VP+I+RRG +W++ G E ++ Sbjct: 287 LMGSIEGRRGMPRPRPPFPAVSGLWGKPTNINNVETWANVPSIIRRGGAWFASMGTEKSK 346 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE M IT E+I GGI G AV GG S CL Sbjct: 347 GTKVFALTGKVKHTGLVEVPMGITLREIIFDIGGGILGD-KKFKAVQIGGPSGGCLTEEH 405 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + Y+ L + G+ +G+ ++VMD ++ F + ESCG+C PCREGT Sbjct: 406 L-DLPVSYEDLAKAGAIMGSGGMVVMDEDNCMVDVAKFFLEFTQRESCGKCVPCREGTKQ 464 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ G ++ L E++ ++ ++C LG A P+ ++ FR E I Sbjct: 465 MLLLLKKICDGEGTMEDLAQLEELAHMVKDMSLCGLGQTAPNPVLTTLRYFRHEYEAHIK 524 Query: 418 QYHRCN 423 C Sbjct: 525 D-RSCP 529 >gi|295676042|ref|YP_003604566.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002] gi|295435885|gb|ADG15055.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002] Length = 441 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH+LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + A++E +G LG N G+ + HHG GAYICGEETALLES+EG Sbjct: 131 HGEIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDMMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G+ ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + H Sbjct: 369 IEHGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424 >gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 619 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 145/430 (33%), Positives = 234/430 (54%), Gaps = 10/430 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q ++ N + +S+ + ++ G ++ + +L I+ +K SGLRGRGG Sbjct: 110 FYQKQVKVALANCGYIDPESIEEYIATGGYEALGTVLTTLTPQQTIDIIKKSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T +KW + + Y + N DE +PG DR ++ +PH ++EG +IA++A GA Sbjct: 170 GFPTYLKWQMVHDNPVE-EKYFICNGDEGDPGAFMDRSLLEGDPHRVLEGMMIAAYATGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ + ++ A+++ +GLLG N + + V GAGA++CGEETA Sbjct: 229 QNGYFYIRAEYPLAIKRIKMAIEKAKETGLLGKNIFGSEFSFEAEVRTGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EG++G P KPP+PA GLY PT VNNVE++ + TI+ +GA W++ G E ++ Sbjct: 289 LIQSIEGQRGNPTPKPPYPAVQGLYKKPTVVNNVETLGNIATIILKGADWFASMGTETSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M IT ELI GG+ G AV GG S CL Sbjct: 349 GTKVFALTGDIRNTGLVEVPMGITLRELIFDVGGGMIGD-HKFKAVQLGGPSGGCLTTQH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ LKE G+ +G+ VIVM+ ++ F ESCG+C+PC+ G Sbjct: 408 L-DVPIDYESLKERGAMMGSGGVIVMNEEKCMVNVAKFFMDFCVDESCGKCSPCKIGLKQ 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++R+ G ++ +I+ L + + I ++C LG A P+ I+ FR E I Sbjct: 467 MLEILKRIDSGYGKEGDIEELQHLGETISKISLCGLGQTAPNPVLSTIRYFRDEYEAHIR 526 Query: 418 QY----HRCN 423 C Sbjct: 527 DKSCANKVCP 536 >gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N+ + + + D +++G + + + L + I+ EVKASGLRGRGGAGF TG+KW Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF + Y++ N DE EPGT KDR I+ +PH L+EG IA FA+GA +IY R Sbjct: 256 SFT-RPLDVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ + L A+ + A G LG N G+ DI V G G YICGEETAL+ES+EGK Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFP GL+ PT VNNVE++A +P I+ RG WY G + GTK++ I Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P VE IT ELI+ + GG+R G GG+S + + +D+ Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 G+ ++G LG+ ++VMD S + ++VF+ HESCGQCTPCREGT +++ + R+ Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G Q ++D L + K + + C LG A P+ L+K FR E+ I Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602 >gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 153/426 (35%), Positives = 237/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q+R + N + +S+ D ++ G + + K L ++ EVK + LRGRGGA Sbjct: 131 FYRNQERNVICNNIKIDSRSIDDYLANGGYSALGKALGSMTPVQVLEEVKKANLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW + D Y++VNADE +PG DR ++ PH+++EG ++ +AIGA Sbjct: 191 GFPAGVKWEG-SRNAPDPVKYVIVNADEGDPGAFMDRALLEGNPHSILEGLILGGYAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E++ A+ + GLLG N GY + V+ GAGA++CGE TA Sbjct: 250 PEGYIYVRHEYPLAVENITLAIQQAQTYGLLGENILGSGYSFRVYVNQGAGAFVCGESTA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG+ G+PR K VGL+G PT +NNVE+ A VP I+ RGA W++ G E+++ Sbjct: 310 LMTSIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINRGADWFTSIGTESSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G + VE M I+ +++ K GGI GG + GG S C+P Sbjct: 370 GTKIFSLVGKIANTGLVEVPMGISLRDIVYKIGGGIPGGKKFKA-IQTGGPSGGCIPES- 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +D L GS +G+ +I MD T ++ F ESCG+C PCREG Sbjct: 428 LLDLPVGFDELTAAGSMMGSGGMIAMDEDTCMVDTARYFIKFLTDESCGKCVPCREGLRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ R+ +G ++ +I+LL +++ + +CALG +A P ++ FR E I Sbjct: 488 MDNILTRITEGKGREGDIELLEALAETAQEAALCALGKSAPNPFLSTLQYFRDEYEAHIR 547 Query: 418 QYHRCN 423 + RC Sbjct: 548 E-KRCP 552 >gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 598 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ + + K+L E + +++ +K SGLRGRGG Sbjct: 111 FYKKQTRIALRNCGVINPEVIEEYIAYDGYKALGKVLTEMQPEEVVDIMKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW F K D Y+ NADE +PG DR ++ +PH +IE IA++A GA Sbjct: 171 GFPAGLKWEFTAKAEGD-EKYVACNADEGDPGAFMDRSVLEGDPHVVIEAMAIAAYAAGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++Y+R E+ E L+ A+ + +GLLG + G+D ++ + GAGA++CGEETA Sbjct: 230 NRGYVYIRAEYPIAVERLEIAIGQARENGLLGKDIFGTGFDFELEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFPA G++ PT +NNVE+ A VP I+ GA W++ G E ++ Sbjct: 290 LINSIEGKRGMPRPRPPFPAQKGIWNKPTLLNNVETYANVPRIILNGAEWFASIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N VE +M T E+I GGI AV GG S C+ A Sbjct: 350 GTKVFALGGKINNTGLVEIAMGTTLKEVIYDIGGGIP-DGKAFKAVQTGGPSGGCITAEH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L E+GS +G+ +IVMD ++ F ESCG+CTPCREGT Sbjct: 409 L-DTPIDYDNLIELGSMMGSGGMIVMDEDNCMVDIARFFLDFTVEESCGKCTPCREGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++ + +G ++D L ++K I+ ++C LG A P+ +K FR + + Sbjct: 468 MLELLDIISEGKGTVADLDKLESLAKTIKSSSLCGLGQTAPNPVLSTLKYFRDEYDAHV- 526 Query: 418 QYHRCN 423 C Sbjct: 527 HDKSCP 532 >gi|121609757|ref|YP_997564.1| NADH-quinone oxidoreductase subunit F [Verminephrobacter eiseniae EF01-2] gi|121554397|gb|ABM58546.1| NADH-quinone oxidoreductase, F subunit [Verminephrobacter eiseniae EF01-2] Length = 452 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 214/421 (50%), Positives = 278/421 (66%), Gaps = 11/421 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58 + +I+ L G +L+D +RG + + ++L D ++ VK SGLRGRGGA Sbjct: 26 EPQIYAGLNGSN-WTLADYEARGGYQGLRRVLGRDGGQGLTPDQVLAMVKESGLRGRGGA 84 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ YLV N+DE EPGTCKDRDI++ PH +IEG +IA++A+G Sbjct: 85 GFPTGLKWSFMPRSFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMLIAAYAMGI 143 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+ GE + E + A+DE A+G LG G+D + HG GAYICGEETA Sbjct: 144 SVGYNYIHGEIFKTYERFEVALDEARAAGYLGHGILGSGFDFQLHASHGFGAYICGEETA 203 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKGQPR KPPFP + GLYG PTT+NN E+ A VP I+R GA+ Y G+ NN Sbjct: 204 LLESLEGKKGQPRFKPPFPVSYGLYGKPTTINNTETFAAVPWIMRHGAAAYLECGKPNNG 263 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+SG V P E + F +L+E G L AVIPGGSS P LPA Sbjct: 264 GTKIFSVSGDVELPGNYEVPLGTPFAKLLELAGG--VRQGRRLKAVIPGGSSAPVLPAAA 321 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M MDYD + + GS LG+ AVIV+D S D+++++WRLS FY HESCGQCTPCREGTGW Sbjct: 322 MMACTMDYDAIAKAGSMLGSGAVIVLDDSRDMVESLWRLSYFYMHESCGQCTPCREGTGW 381 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M RV++R+ G + +++LL V+ NI+GRTICALGDAAA P++ +IK+FRP E I Sbjct: 382 MWRVIDRIRHGQGRAGDLELLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIG 441 Query: 418 Q 418 + Sbjct: 442 K 442 >gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 486 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 149/425 (35%), Positives = 233/425 (54%), Gaps = 7/425 (1%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 + Q RI T G + +S+ ++ G + + K L E +I +K SGLRGRGGAG Sbjct: 1 MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSEMKPADVIELMKNSGLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F K SD ++V NADE +PG DR ++ +PH+++E I ++AIG + Sbjct: 61 FPTGVKWGFAAKYDSDI-KHVVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 IY+R E+ L+ A+++ G+LG N + D+ + +GAGA++CGEETAL Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNIMGTDFCFDLELKYGAGAFVCGEETAL 179 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG +G+P KPPFPA G + PT VNNVE++A +P I+ +GA W++ G E ++G Sbjct: 180 INSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSKG 239 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F I G + +E M T E+I GGI GG + AV GG S L + Sbjct: 240 TKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKDL 298 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A +DY+ L S +G+ +IVMD ++ F E+CG+CTPCR G+ + Sbjct: 299 -DAPIDYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRI 357 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++++ G + +++ L +S NI+ +C LG P+ ++ F + Sbjct: 358 YELLDKITIGQGTEADLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFEDEYRAHVID 417 Query: 419 YHRCN 423 +C Sbjct: 418 -KKCP 421 >gi|120609955|ref|YP_969633.1| NADH-quinone oxidoreductase subunit F [Acidovorax citrulli AAC00-1] gi|120588419|gb|ABM31859.1| NADH dehydrogenase subunit F [Acidovorax citrulli AAC00-1] Length = 452 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 216/422 (51%), Positives = 277/422 (65%), Gaps = 11/422 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58 + +I+ L G S+ D +RG + + KIL +D +I VK SGLRGRGGA Sbjct: 26 EPQIYAGLDGTN-WSIKDYEARGGYQALRKILGVDGGEPMTQDQVIATVKESGLRGRGGA 84 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ YLV N+DE EPGTCKDRDI++ PH +IEG +IA+FA+G Sbjct: 85 GFPTGLKWSFMPRSFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGI 143 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+ GE + E +AA++E A+G LG N + + HG GAYICGEETA Sbjct: 144 SVGYNYIHGEIFQTYERFEAALEEARAAGYLGDNILGSSFSFQLHAAHGFGAYICGEETA 203 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN Sbjct: 204 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNG 263 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+SG V P E + F +L+E G L AVIPGGSS P LPA Sbjct: 264 GTKIFSVSGDVEKPGNYEIPLGTPFSKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASI 321 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW Sbjct: 322 IMECTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGW 381 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M RV++R+ G+ ++ ++DLL V+ NI+GRTICALGDAAA P++ +IK+FRP E I Sbjct: 382 MWRVIDRIQHGLGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIR 441 Query: 418 QY 419 Sbjct: 442 NK 443 >gi|197120282|ref|YP_002140709.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem] gi|197089642|gb|ACH40913.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem] Length = 593 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 166/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 + Q R+ T + + L + + ++K + E +I+EVK SGLRGRGG Sbjct: 109 FVDQQMRVVMTGCGQIDPERLDAYIEEDGFKAIEKCVKEMKPAEVIDEVKKSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKWSF YL+ NADE +PG DR I+ +P+ +IEG +IA++AIG Sbjct: 169 GFPTGMKWSFCA-ASPGNHKYLICNADEGDPGAFMDRSILEGDPYCVIEGMMIAAYAIGC 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + LQ A+D CY G LG N G+D D+ + GAGA++CGEETA Sbjct: 228 DAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFDFDMRIKKGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ +G WY+ G + + Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVRHIINKGFEWYASLGTDTTK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE ++ ++I K CGGI AV GG S C+PA Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F K ESCG+C PCR G Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTKMESCGKCVPCRIGLKA 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++ +G + +ID L E+ I+ ++C LG A PI +K FR E I Sbjct: 466 MLDILEKITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRNEYEAHII 525 Query: 418 QYHRCN 423 RC Sbjct: 526 D-KRCP 530 >gi|56707216|ref|YP_169112.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110669686|ref|YP_666243.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis FSC198] gi|187930993|ref|YP_001890977.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|224456277|ref|ZP_03664750.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254371432|ref|ZP_04987433.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|254874054|ref|ZP_05246764.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603708|emb|CAG44669.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320019|emb|CAL08052.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis FSC198] gi|151569671|gb|EDN35325.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|187711902|gb|ACD30199.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840053|gb|EET18489.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158324|gb|ADA77715.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp. tularensis NE061598] Length = 424 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419 >gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519] gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii] Length = 576 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 163/419 (38%), Positives = 241/419 (57%), Gaps = 7/419 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 L Q R+ N + +S+ D ++ G ++ + E K +D +I+E+K SGLRGRGGAG Sbjct: 90 LEKQPRVVLRNCGVINPESIDDYINIGGYEAIKNCYESKSQDAVIDEIKKSGLRGRGGAG 149 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW K + Y+V NADE +PG DR ++ +PH LIEG +I FAIGA Sbjct: 150 FPTWFKWDAAKKSA-GQKKYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMMICGFAIGAD 208 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETA 177 +YVR E+ LQ A+++ G LG N G + + + GAGA++CGEETA Sbjct: 209 EGIVYVRAEYPLAILRLQKAIEDATERGFLGENIFGIPGRNFSLRIKAGAGAFVCGEETA 268 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A VP I++ G ++ +G E +R Sbjct: 269 LIASLEGERGMPRLKPPFPAQKGYWQLPTNINNVETFANVPWIIKNGGEAFAKYGIETSR 328 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V VE M I+ E+ GG G AV GG S C+PA Sbjct: 329 GTKVFALTGKVKKGGLVEVPMGISLKEI-IYGVGGGIVGDRPFKAVQLGGPSGGCVPAE- 386 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ + + G+ +G+ ++VMD +T ++ F ESCG+CT CR GT Sbjct: 387 LIDTKVDYESITKTGAIVGSGGMVVMDDTTCMVDMARFFLDFTCKESCGKCTYCRLGTKR 446 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ G ++ +I+LL E+S ++ ++C LG A P+ IK FR E+ I Sbjct: 447 MLEILERITAGEGREGDIELLEELSYKVKDGSLCGLGQTAPNPVLTTIKYFRNEYEDHI 505 >gi|77166018|ref|YP_344543.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC 19707] gi|254436308|ref|ZP_05049814.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] gi|76884332|gb|ABA59013.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707] gi|207087998|gb|EDZ65271.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] Length = 427 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 218/425 (51%), Positives = 279/425 (65%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGA 58 M+ F L L + ++ +IL + II+E+KASGLRGRGGA Sbjct: 1 MIALNQVCFRTLDLDPPWGLESYLKVKGYEVWKRILREKTPPSKIIDEIKASGLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMPK + Y+V N+DE EPGT KDRDI+R+ PH LIEG IA +AIGA Sbjct: 61 GFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYAIGA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y RGEF E +AA++E Y +GLLG N G D D+ H GAGAYICGEETA Sbjct: 120 AVGYNYTRGEFSEPIERFEAALEEAYQAGLLGKNILASGVDFDLYSHPGAGAYICGEETA 179 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LLESLEGKKG PR KPPFPA GLYG PTT+NN E++A VP IL +G W+ G + Sbjct: 180 LLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVILEKGGQWFLKLGTPTSG 239 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+SGHVN P E M I+F +L+E G + L AVIPGG+SVP +PA Sbjct: 240 GTKIFSVSGHVNRPGNYEVPMGISFKDLLELAGGM--RNGNALKAVIPGGTSVPVMPAEA 297 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A MDYD L + GS LG +VI+MD +T +++A+ R+S FY+ ESCGQCTPCREGTGW Sbjct: 298 IMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYREESCGQCTPCREGTGW 357 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV+ R+ +G + ++D + V++NI+G TICALGDAAA P+ IK+FR + ID Sbjct: 358 LYRVVHRIEQGQGTQEDLDKVVNVAENIDGHTICALGDAAAAPVISFIKHFRDEFQYHID 417 Query: 418 QYHRC 422 + RC Sbjct: 418 -HKRC 421 >gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1] Length = 632 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 153/427 (35%), Positives = 232/427 (54%), Gaps = 7/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + + + R ++ + K+L E + +I + SGLRGRGG Sbjct: 137 FYKKQHRVALRNCGVINPECIDEYIGRHGYEALGKVLTEMTPEDVIQTILDSGLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TGMKW + D Y+ NADE +PG DR ++ +PH ++E IA +AIG Sbjct: 197 GFPTGMKWKLARNIVPDADQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMSIAGYAIG 256 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ E L A+ + +G+LG N + DI + GAGA++CGEET Sbjct: 257 ATQGYIYVRAEYPIAVERLNIAIKQAREAGMLGKNIFGTDFCFDIDLRLGAGAFVCGEET 316 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EG +G+PR +PPFPA GL+ PT +NNVE+ A +P I+ GA W++ G E + Sbjct: 317 ALMTSIEGNRGEPRPRPPFPAEKGLFQKPTILNNVETYANIPQIILNGAEWFASMGTEKS 376 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+F++ G + VE M T E+IE+ GGI A GG S C+ A Sbjct: 377 KGTKVFALGGKIKNTGLVEVPMGTTLREVIEEIGGGIP-NGKKFKAAQTGGPSGGCIDAS 435 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +DYD L +GS +G+ +IVMD ++ F ESCG+CTPCR GT Sbjct: 436 N-FDIPIDYDNLIGIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTK 494 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M +++++ KG ++D L E++ +I+ ++C LG A P+ ++ FR + Sbjct: 495 RMWEILDKITKGKGTLEDLDKLEELAYHIKANSLCGLGQTAPNPVLSTLRCFRDEYIAHV 554 Query: 417 DQYHRCN 423 +C Sbjct: 555 VD-KKCP 560 >gi|186470175|gb|ACC85638.1| HoxF [Lyngbya majuscula CCAP 1446/4] Length = 538 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 240/417 (57%), Gaps = 7/417 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q + G + + + + ++ G + ++ + E + ++ E+ SGLRGRGGA Sbjct: 112 FFSRQLLVVREHSGKIDPEKIGEYLAVGGYQSLHHAIYEMTPEEVVAEITKSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ Y++ NADE +PG DR ++ +PH ++EG IA +A+GA Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ LQ A+ + G+LG+ D + + GAGA++CGEETA Sbjct: 231 NQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQIFGAPVDFSVDIRVGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S++G +G PR +PP+PA GL+ PT +NNVE+ A + I+R+GA W+ G E ++ Sbjct: 291 LIASIDGNRGVPRPRPPYPAVSGLWEKPTLINNVETFANITPIIRKGADWFGSIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M IT E++E+ GG+ G + AV GG S C+P Sbjct: 351 GTKIFSLTGKIRNTGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPV-H 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++GS +G+ ++VMD+ T +I+ F + ESCG+C PCR GT Sbjct: 408 LLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQVAQFYMDFCREESCGKCIPCRAGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M +++ +L+K A +++ L E+ ++ ++C LG A PI + F E Sbjct: 468 MYQLLTKLIKKQATAADLEKLKELCSMVKATSLCGLGQTAPNPIVSTLHYFESEYTE 524 >gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 623 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 149/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + + + +S+ + ++ G + + K + + E+ +GLRGRGG Sbjct: 137 FYKSQTRLVLEHCGHIDSESIQEYIAYGGYQALAKAMDTMTPSEVCKEISDAGLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG KWS + SD Y++ N DE +PG DR +M +PH +IEG IA++ GA Sbjct: 197 GYPTGKKWSQVLSYASDM-KYVICNGDEGDPGAFMDRSLMEGDPHNIIEGMAIAAYGTGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L A+++ GLLG N G + D+ V+ GAGA++CGE +A Sbjct: 256 SEGYIYVRAEYPLAVARLNKAIEQAREIGLLGKNILGTGLNFDVHVNQGAGAFVCGEGSA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR+K GL+ PT +NNVE+ A V I+ GA+WY +G + + Sbjct: 316 LIASIEGERGMPRVKAKRTVEEGLWKKPTVLNNVETFANVRHIIMNGAAWYQSYGTKGSA 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G+VN +E M T ++I + GGIRG AV GG S CL Sbjct: 376 GTKAFALTGNVNNTGLIEVPMGTTLRKIIFEIGGGIRGN-KKFKAVQIGGPSGGCLTEEH 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L + G+ +G+ +++MD T +++ F ++ESCG+C PCREGT Sbjct: 435 L-DMALDFDSLIDAGAMIGSGGMVIMDEDTCMVEVAKFFMNFTQNESCGKCVPCREGTKI 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++V G +++LL E+S I +C LG AA P+ +K FR + Sbjct: 494 MLNILEKIVSGKGSMEDLNLLEELSDTITNTALCGLGKTAANPVVSSLKYFRDEYLAHVV 553 Query: 418 QYHRCN 423 + RC Sbjct: 554 E-KRCP 558 >gi|117927481|ref|YP_872032.1| NADH-quinone oxidoreductase, F subunit [Acidothermus cellulolyticus 11B] gi|117647944|gb|ABK52046.1| NADH dehydrogenase subunit F [Acidothermus cellulolyticus 11B] Length = 434 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 205/420 (48%), Positives = 262/420 (62%), Gaps = 7/420 (1%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T +G ++ G + + K L D ++ VK SGLRGRGGAGF TGMKW Sbjct: 8 VLTATWGTDRSWTIDAYHQAGGYQALRKALAMSPDAVLQLVKDSGLRGRGGAGFPTGMKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+P+ +PHYLVVNADESEPGTCKD ++ PHTLIEG +IAS+AI AH AFIY+R Sbjct: 68 GFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLMATPHTLIEGAIIASYAIRAHQAFIYIR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + L AV+E A+G LG + G+D+DI VH GAGAYICGEETALLESLEG Sbjct: 127 GEVVHVIRRLLRAVEEARAAGYLGRDILGSGFDLDITVHIGAGAYICGEETALLESLEGY 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLYGCPT +NNVE+IA VP I+R G WY G E + G K+FS+S Sbjct: 187 RGQPRLRPPFPATAGLYGCPTVINNVETIASVPAIVRGGVEWYRSMGTEKSPGFKIFSLS 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + IT EL++ G L PGGSS P A + +D+ Sbjct: 247 GHVARPGQYEAPLGITLRELLDAAGGM--REGHELKFWTPGGSSTPLFTAEHL-DVPLDF 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G + GS LGT A+ + D +T +++A+ R FY HESCG+CTPCREGT W ++ +RL Sbjct: 304 EGPPQHGSMLGTTALQIFDETTCVVRAVKRWCEFYAHESCGKCTPCREGTFWYAQIFDRL 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 KG+ +I+ L ++S NI GR CALGD A P+ I+ FR +Q C F Sbjct: 364 EKGLGTAEDIETLLDLSDNILGRAFCALGDGATSPVTSSIQYFRDEYIAHYEQGG-CPFD 422 >gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia bacterium enrichment culture clone BF] Length = 603 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 155/419 (36%), Positives = 249/419 (59%), Gaps = 6/419 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q RI N + +S+ ++ + + K L+ + +I E+ SGLRGRGG Sbjct: 114 FIDKQQRILLKNCGVINPESIDSYLAVDGYKAIQKALKSMAPEQVIAEIDRSGLRGRGGG 173 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFST KWSF K R Y++ NADE +PG DR ++ PH+++EG +IA +A+GA Sbjct: 174 GFSTATKWSFARKSP-GREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 232 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++Y+R E+ + L+AA+ + A G LG N + I++ GAGA++CGEETA Sbjct: 233 QTGYVYIRAEYPLAIKRLKAAISQAEAKGFLGGNILGSDFSFRIMIREGAGAFVCGEETA 292 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR++PP+P GL+G PT++NNVE+ A VP I+ GA ++ +G E ++ Sbjct: 293 LIMSVEGKRGMPRIRPPYPVEAGLWGKPTSINNVETFANVPWIILNGADAFNRYGTETSK 352 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT +E++ GG+ G L AV GG S C+PA Sbjct: 353 GTKVFALAGSIARGGLIEVPMGITINEIVFDIGGGLASGRK-LKAVQTGGPSGGCIPAS- 410 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ LK++G+ +G+ +++MD ST ++ F + ESCG+CT CR GT Sbjct: 411 LADTPVDYESLKKIGAIMGSGGLLIMDESTCMVDVAKFFLNFTQEESCGKCTFCRVGTRQ 470 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M++++ R+ G + +I++L ++ + I ++C LG +A P+ IK FR E I Sbjct: 471 MLKILNRITDGEGKDGDIEMLEDLGQKISAGSLCGLGQSAPNPVLTTIKYFRSEYEAHI 529 >gi|294814399|ref|ZP_06773042.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] gi|326442789|ref|ZP_08217523.1| NADH dehydrogenase I chain F [Streptomyces clavuligerus ATCC 27064] gi|294326998|gb|EFG08641.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] Length = 458 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 196/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L + + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 37 ESWTLETYRRHDGYQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 95 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG +IA +AI ++ AFIY+RGE + Sbjct: 96 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRR 155 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 156 LHEAVREAYEAGYLGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 215 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL RG W+ G + + G L+S+SGHV P Sbjct: 216 FPAVAGLYACPTVVNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQY 275 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P L + +DY+G+ GS Sbjct: 276 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVAAAGSM 332 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 333 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPAD 392 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI ++ FR E +D C F Sbjct: 393 LDKLADIADNINGKSFCALGDGAASPIFSSLRYFRAEYEAHLDGAG-CPFD 442 >gi|29831385|ref|NP_826019.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680] gi|29608500|dbj|BAC72554.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces avermitilis MA-4680] Length = 449 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 197/410 (48%), Positives = 255/410 (62%), Gaps = 6/410 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ + Sbjct: 30 SWTLDVYRRHEGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGK 88 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L Sbjct: 89 PHYLVVNADESEPGTCKDIPLLFANPHSLIEGMVIACYAIRSSHAFIYLRGEVVPVLRRL 148 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV E YA+G LG N G D++I VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 149 HEAVREAYAAGYLGKNILGSGLDLEITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 208 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E Sbjct: 209 PAVAGLYACPTVVNNVESIASVPAILHKGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYE 268 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT +L++ G L PGGSS P + +DY+G+ GS L Sbjct: 269 APLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSML 325 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++ Sbjct: 326 GTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMTDL 385 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 386 DKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG-CPFD 434 >gi|294788075|ref|ZP_06753319.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC 29453] gi|294484368|gb|EFG32051.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC 29453] Length = 433 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 208/418 (49%), Positives = 264/418 (63%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTG 63 IF N+ +L++ RG + + KIL + + +I+E+KASGLRGRGGAGF TG Sbjct: 9 IFENVDTRNPNCWTLAEYQVRGGYQALRKILTEKIPQTDVIDEMKASGLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSFMP+ Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Sbjct: 69 LKWSFMPRSFPG-AKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYN 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+ GE + + A+ E +G LG N + ++ HHG GAYICGEETALLESL Sbjct: 128 YIHGEIFEGFQLFEKALQEARDAGFLGKNIMGSEFSFELFAHHGYGAYICGEETALLESL 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G ++ G E+ GTKLF Sbjct: 188 EGKKGQPRFKPPFPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 SISGHV P E ++ F EL+ G G L AVIPGGSS P LPA M Sbjct: 248 SISGHVERPGNYEVALGTPFSELLAMAGG--VRGGKKLKAVIPGGSSAPVLPADIMMSCN 305 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + + GS LG+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ Sbjct: 306 MDYDSIAKAGSMLGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIV 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+ G + ++DLL V N+ GRTICAL DAA +P++ K+FR E I+ Sbjct: 366 HRIAMGKGRPEDLDLLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIEHGK 423 >gi|126656036|ref|ZP_01727420.1| hydrogenase subunit [Cyanothece sp. CCY0110] gi|126622316|gb|EAZ93022.1| hydrogenase subunit [Cyanothece sp. CCY0110] Length = 535 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 148/411 (36%), Positives = 248/411 (60%), Gaps = 5/411 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q + N + +S+ D +SRG + + +L E + + EV SGLRGRGG G+ T Sbjct: 121 QQPIVLENSGKIDPESIDDYISRGGYQQLHHVLLEMTPNDVTQEVTKSGLRGRGGGGYPT 180 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW+ + K+ S + Y++ NADE +PG DR ++ +PH ++EG IA++A+GA+ + Sbjct: 181 GVKWATVAKM-SGQQKYVICNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGANHGY 239 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ + L+ A+ + GL+GS +D I + GAGA++CGEETAL+ S Sbjct: 240 IYIRAEYPLAIKRLEKAIQQAKRYGLMGSQIFDSPFDFKIDIRVGAGAFVCGEETALIAS 299 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G PR +PP+PA GL+G PT +NNVE+ A + I+R G WY+ G EN++GTK+ Sbjct: 300 VEGKRGTPRPRPPYPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSKGTKV 359 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G V +E M + ++IE+ GG+ + AV GG S C+PA + Sbjct: 360 FALTGKVENNGLIEVPMGTSIRKIIEEIGGGVLDQG-TVKAVQTGGPSGGCIPA-HLLDT 417 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 ++YD L+++G+ +G+ +IVMD+ T +++ F + ESCG+C PCR GT + + Sbjct: 418 PVEYDSLQKLGTIMGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQLYDL 477 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +LV+ A ++++D L + + ++ ++C LG A P+ ++ F+ Sbjct: 478 LTKLVERKATQQDLDKLEALCQMVKDTSLCGLGMTAPNPVISTLQYFQDEY 528 >gi|227822748|ref|YP_002826720.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234] gi|227341749|gb|ACP25967.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234] Length = 420 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 191/423 (45%), Positives = 257/423 (60%), Gaps = 7/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G L+ + G + + K+L E D ++ VK S LRGRGGAGF TG Sbjct: 3 EPVLLKNIDAPDGHVLATYEAGGGYQALAKVLREHTPDEVVELVKQSNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F+PK SD+P YL NADE EPGT KDR IM +PH L+EG ++++AIGA A++ Sbjct: 63 MKWGFVPKQ-SDKPKYLCCNADEGEPGTFKDRIIMERDPHQLVEGLAVSAYAIGAETAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVRGE+++ L+ A+ E G LG+ + I +H GAGAYICGEETA+LESL Sbjct: 122 YVRGEYVKAIRRLEQAIAEARDKGYLGAGILGSDFSFAIHIHCGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG W+ G + + G KL+ Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGPHWFRAIGPDKSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I EL+E G + AVIPGG S P +P G + Sbjct: 242 CVSGQVRKPGLYELPMGIPLRELVEHAGG--PLPGRRIKAVIPGGVSAPVIPKGGL-DVG 298 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W ++V+ Sbjct: 299 MDFDSLAAAGSMLGSAGVIVVDDSTCMVKVAARIVEFFHHESCGKCTPCREGLNWAVKVL 358 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G +++ L ++ K I G T CALGD AA ++ + +FR I++ RC Sbjct: 359 RRIEAGEGAPGDLEQLEKLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFAAHIEE-RRC 417 Query: 423 NFQ 425 F Sbjct: 418 PFH 420 >gi|320449685|ref|YP_004201781.1| NADH-quinone oxidoreductase subunit F [Thermus scotoductus SA-01] gi|320149854|gb|ADW21232.1| NADH-quinone oxidoreductase, subunit F [Thermus scotoductus SA-01] Length = 437 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 192/426 (45%), Positives = 262/426 (61%), Gaps = 13/426 (3%) Query: 6 DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 R LY G +L + G ++ ++L EK + +I EVK SGLRGRGGAGF Sbjct: 11 PRFEKTLYAHVGQEGSWTLDYYLKHGGYETAKRVLKEKTPEEVIEEVKRSGLRGRGGAGF 70 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + HYL+ NADESEPG+ KDR IM PH L+EG ++A +AI A Sbjct: 71 PTGVKWSFMPKD--GKQHYLICNADESEPGSFKDRYIMEDVPHLLLEGMILAGYAIRATV 128 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGE+ + + L+AA+ E G LG N G+ D+ VH GAGAYICGEETAL+ Sbjct: 129 GYIYVRGEYRKAADRLEAAIREARTRGYLGENLFGSGFSFDVHVHRGAGAYICGEETALM 188 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V IL RGA W++ G E ++G Sbjct: 189 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPILERGADWFASMGTEQSKGM 248 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298 KL+ ISG V P E M TF ELI GG + + A+IPGGSS P LP ++ Sbjct: 249 KLYQISGPVRRPGVYELPMGTTFRELIYDWAGGP---LEPIQALIPGGSSTPPLPFTDEV 305 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357 M Y+ L+ GS LGT VI++ ++ A+W ++ FY HESCG+CTPCREG + Sbjct: 306 LDTPMSYEHLQAQGSMLGTGGVILIPERVSMVDAMWNVTRFYAHESCGKCTPCREGVAGF 365 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ + ++ G ++++++ L + IEGR+ C L DAA WP++G +K+F+ + Sbjct: 366 MVNLFAKIGSGEGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLKHFKDQYLALVR 425 Query: 418 QYHRCN 423 + Sbjct: 426 EKKPVP 431 >gi|254391142|ref|ZP_05006349.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] gi|197704836|gb|EDY50648.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus ATCC 27064] Length = 456 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 196/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L + + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 35 ESWTLETYRRHDGYQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 93 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG +IA +AI ++ AFIY+RGE + Sbjct: 94 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRR 153 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG N G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 154 LHEAVREAYEAGYLGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 213 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL RG W+ G + + G L+S+SGHV P Sbjct: 214 FPAVAGLYACPTVVNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQY 273 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P L + +DY+G+ GS Sbjct: 274 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVAAAGSM 330 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 331 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPAD 390 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI ++ FR E +D C F Sbjct: 391 LDKLADIADNINGKSFCALGDGAASPIFSSLRYFRAEYEAHLDGAG-CPFD 440 >gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 241/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N ++ ++ + ++R + + K L E + II+EVK S LRGRGG Sbjct: 114 FYKYQQRIALRNCGLIEPHNIREYIARDGYQALGKALTEMTPEEIIDEVKTSKLRGRGGG 173 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K P +++ NADE +PG DR I+ +PH++IEG I ++ IGA Sbjct: 174 GFPTGVKWELT-KSAEGSPKFIICNADEGDPGAFMDRSIVEGDPHSVIEGLAIGAYVIGA 232 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + L+ A++ G+LG + G+D ++ + GAGA++CGEETA Sbjct: 233 NQGYVYVRAEYPLAVDRLEKAIESARELGVLGEDIFGSGFDFNVEIRVGAGAFVCGEETA 292 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S++G +G P KPP+PAN GL+ PT +NNVE++A +P I+ G W+S G E + Sbjct: 293 LIHSVQGDRGDPHGKPPYPANDGLWDQPTVINNVETLANIPQIILNGGDWFSHIGTEEST 352 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G ++ +E M T E+I GGI + A GG S CLP + Sbjct: 353 GTKVFALAGDIHNTGLIEVPMGTTLREVIFNLGGGIPDDKE-FKAAQTGGPSGGCLPREK 411 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MDYD L E+GS +G+ +IVMD T ++ F + E+CG+CTP R GT Sbjct: 412 L-DISMDYDSLLEVGSMMGSGGLIVMDEDTCMVDVARFYLDFTQDEACGKCTPGRVGTKR 470 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+V G A++ +D L + I+ +C LG +A PI ++ FR E + Sbjct: 471 LLEMLNRIVSGEAEENILDKLEALCHEIKKTALCGLGQSAPNPILSTLEYFRDEYEAHVF 530 Query: 418 QYHRCN 423 C Sbjct: 531 D-KYCP 535 >gi|320009199|gb|ADW04049.1| NADH-quinone oxidoreductase, F subunit [Streptomyces flavogriseus ATCC 33331] Length = 457 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 196/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 30 ESWTLDTYHRHDGYEGLRKALAMEPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 89 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 149 LHEAVREAYEAGYLGTNVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 268 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 269 EAPLGITLRQLLDMSGG--IREGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 325 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q + Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMAD 385 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 435 >gi|154287522|ref|XP_001544556.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] gi|150408197|gb|EDN03738.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] Length = 419 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 253/390 (64%), Positives = 306/390 (78%), Gaps = 4/390 (1%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTC 92 L II+E+KASGLRGRGGAGF +G+KWSFM D+ P YLVVNADE EPGTC Sbjct: 3 LRTDDFQIISEIKASGLRGRGGAGFPSGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTC 62 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 KDR+IMR +PH LIEGC++A A+ A A+IY+RGEF E LQ A+ E Y +GL+G N Sbjct: 63 KDREIMRKDPHKLIEGCLVAGRAMNATAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKN 122 Query: 153 S-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + GYD D+ +H G GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NV Sbjct: 123 ACGSGYDFDVYLHRGMGAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNV 182 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++AV PTI RRG W++ FGRE N+GTKLF ISGHVN PCTVEE MSI ELIE+HCG Sbjct: 183 ETVAVAPTICRRGGKWFASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCG 242 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G+RGGWDNLLAVIPGGSS P LP +MD+D LK+ SGLGTAAVIVMD+STD++ Sbjct: 243 GVRGGWDNLLAVIPGGSSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVA 302 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 AI RLS FYKHESCGQCTPCREG+ W M++M+R +G A++REID+L E++K +EG TIC Sbjct: 303 AISRLSAFYKHESCGQCTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTIC 362 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ALG+A AWPIQGLI++FRP +E RI +Y + Sbjct: 363 ALGEAFAWPIQGLIRHFRPELEARIRKYEQ 392 >gi|253996968|ref|YP_003049032.1| NADH-quinone oxidoreductase subunit F [Methylotenera mobilis JLW8] gi|253983647|gb|ACT48505.1| NADH-quinone oxidoreductase, F subunit [Methylotenera mobilis JLW8] Length = 438 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 212/423 (50%), Positives = 274/423 (64%), Gaps = 7/423 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58 LT Q + L SL + G + + +++ + II+EVKASGLRGRGGA Sbjct: 13 LTGQTLVTLRTLTEENPASLETYLKLGGYAALKRVVTEKVKPTDIISEVKASGLRGRGGA 72 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFMP+ D YLV N DE EPGT KDRDI+R+ PH LIEG IA++ +GA Sbjct: 73 GFPTGLKWSFMPRYF-DGVKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGA 131 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + Y+ GE ++ E +AA+ E A+G LG + + D+ HG GAYICGEETA Sbjct: 132 RVGYNYIHGEIWQDYEIFEAALHEAKAAGYLGEDLFGTNFSFDLYAVHGYGAYICGEETA 191 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES +P I++ G ++ G N+ Sbjct: 192 LIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIMQNGGKAFADLGVANSG 251 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLFSISGHV P E +M + F EL+ G +G L AVIPGG S +PA Sbjct: 252 GTKLFSISGHVEKPGNYEVNMGMPFTELLALAGGIWKG--RQLKAVIPGGPSTAVMPASA 309 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + GA MDYDGL + S LG ++IVMD +T ++KA+ RLS F+ ESCGQCTPCREGTGW Sbjct: 310 ILGATMDYDGLSKARSSLGAGSMIVMDDTTCMVKALHRLSYFFYEESCGQCTPCREGTGW 369 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV++R+VKG + ++DLL +VS NI GRTICALG+AAA P+ IK+FRP E I Sbjct: 370 VYRVIDRIVKGQGKMEDLDLLTDVSNNIAGRTICALGEAAATPVLSFIKHFRPEFEYYIQ 429 Query: 418 QYH 420 Sbjct: 430 HGK 432 >gi|254382438|ref|ZP_04997797.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1] gi|194341342|gb|EDX22308.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1] Length = 448 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 195/411 (47%), Positives = 254/411 (61%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 29 QSWTLETYRRHEGYEGLRKALAMTPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + HYLVVNADESEPGTCKD ++ PH+LIEG +IA +AI + AFIY+RGE + Sbjct: 88 KSHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACYAIRSEHAFIYLRGETVPVLRR 147 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG++ G +DI VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 148 LHEAVREAYEAGYLGTDILGSGLKLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL RG W+ G E + G L+S+SGHV P Sbjct: 208 FPAVEGLYACPTVVNNVESIASVPAILNRGKDWFKAMGTEKSPGFTLYSLSGHVVGPGQY 267 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 268 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 324 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSD 384 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 434 >gi|78067041|ref|YP_369810.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. 383] gi|254247662|ref|ZP_04940983.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184] gi|77967786|gb|ABB09166.1| NADH dehydrogenase subunit F [Burkholderia sp. 383] gi|124872438|gb|EAY64154.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184] Length = 436 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|94309877|ref|YP_583087.1| NADH-quinone oxidoreductase, F subunit [Cupriavidus metallidurans CH34] gi|93353729|gb|ABF07818.1| NADH:ubiquinone oxidoreductase, chain F [Cupriavidus metallidurans CH34] Length = 431 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 205/418 (49%), Positives = 272/418 (65%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D + RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLDGKN-WHLEDYVKRGGYKQLRRILEEKVTPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRAFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E + + A++E +G LG N G++ + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIWNEYKIFEEALEEARRAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+FS+ Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLEVGPENYLKMGKPNNGGSKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M + MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLLELAGGM--RGGKKIKAVIPGGSSAPVVPGDLMMASDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + ++ +C Sbjct: 369 IEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQC 425 >gi|29654734|ref|NP_820426.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 493] gi|161830422|ref|YP_001597288.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 331] gi|29542002|gb|AAO90940.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii RSA 493] gi|161762289|gb|ABX77931.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 331] Length = 422 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 206/415 (49%), Positives = 275/415 (66%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 + L+ + +L S G + + KIL++ + IINE+K S LRGRGGAGF TG+KW Sbjct: 8 YRTLHLEKPWTLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P+ Y++ N+DESEPGT KDRDI+R PH ++EG IA + +GA + ++R Sbjct: 68 SFIPRDKPG-EKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + + A+ + +GL+G N G D++I H AGAYICGEETAL+ SLEGK Sbjct: 127 GEFWEPFDRCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGK 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFPAN GLY P+ +NN E+ A VP IL +G W++ G N GTK+FS+S Sbjct: 187 RGWPRFKPPFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVS 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + I F +L+ GG+R G + L AVIPGGSS+P LPA M AIM + Sbjct: 247 GHVAKPGNYEVPLGIPFADLL-ALAGGMREGSE-LKAVIPGGSSMPVLPAEVMMKAIMSF 304 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DGL E GS LG+ V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ Sbjct: 305 DGLVEAGSMLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRI 364 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 KG KR+I+ L V+K IEGRTICA G+AAAWP+ G++K+F E + Sbjct: 365 EKGEGTKRDIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTHGK 419 >gi|170733604|ref|YP_001765551.1| NADH-quinone oxidoreductase,subunit F [Burkholderia cenocepacia MC0-3] gi|169816846|gb|ACA91429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia MC0-3] Length = 436 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKRIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|167569427|ref|ZP_02362301.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis C6786] Length = 436 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA++E +G LG N G+ + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|134301251|ref|YP_001121219.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. tularensis WY96-3418] gi|134049028|gb|ABO46099.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp. tularensis WY96-3418] Length = 424 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 211/416 (50%), Positives = 266/416 (63%), Gaps = 6/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L+ + SL +S G + +KIL + + II E+K SGLRGRGGAGF TG+KW Sbjct: 7 FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DE EPGTCKDR+I+R+ PH LIEG IA + +GA + Y R Sbjct: 67 SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ E Y +GLLG+N K G D+ GAGAYICGEETALL SLEGK Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KG+PR KPPFPA GLY PT +NN E+ A VP IL+ G W+ G E + GTKLF +S Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV VE + + F EL++ CGG+R G L AVIPGGSS L A +M MDY Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + GS LG+ AV+V+D +T I++ + RL+ FY ESCGQCTPCREGTGW+ R + R+ Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G + +ID L V+ NIEG TIC+LGDAAAWP+Q I FR I+ R Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICSLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419 >gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 596 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + + ++ + + K+L E + +I+ +K SGLRGRGG Sbjct: 111 FYKKQKRVALRNCGIINPEVIEEYIAFDGYKALGKVLTEMKPEEVIDIIKRSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF +G+KW F K D Y+ NADE +PG DR ++ +PH +IE IA++A GA Sbjct: 171 GFPSGLKWEFTAKAEGD-EKYVACNADEGDPGAFMDRSVLEGDPHVIIEAMAIAAYAAGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++Y+R E+ E L+ A+ + +GLLG N +D ++ + GAGA++CGEETA Sbjct: 230 NRGYVYIRAEYPIAVERLEIAIKQARENGLLGKNIFGTEFDFELEIRLGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PPFPA+ G++ PT +NNVE+ A VP I+ GA W++ G E ++ Sbjct: 290 LINSIEGKRGMPRPRPPFPAHKGIWNKPTLLNNVETYANVPQIILNGAEWFASMGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N +E +M T E+I GGI G AV GG S C+ A Sbjct: 350 GTKVFALGGKINNTGLLEVAMGTTLREVIYDVGGGIPNG-KAFKAVQTGGPSGGCITAEH 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD ++ F ESCG+C PCR GT Sbjct: 409 L-DTPIDYDNLIALGSMMGSGGMIVMDEDNCMVDIARFFLDFTVEESCGKCPPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++++ +G + ++D L ++++I+ ++C LG A P+ +K FR E + Sbjct: 468 MLELLDKITEGKGELEDLDKLERLAESIKVASLCGLGQTAPNPVLSTLKYFRDEYEAHVK 527 Query: 418 QYHRCN 423 + C Sbjct: 528 E-KSCP 532 >gi|254251866|ref|ZP_04945184.1| NADH dehydrogenase [Burkholderia dolosa AUO158] gi|124894475|gb|EAY68355.1| NADH dehydrogenase [Burkholderia dolosa AUO158] Length = 436 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVVPGDVMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + ++GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|118617951|ref|YP_906283.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium ulcerans Agy99] gi|118570061|gb|ABL04812.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium ulcerans Agy99] Length = 448 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 208/420 (49%), Positives = 272/420 (64%), Gaps = 10/420 (2%) Query: 12 LYGLQG--KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 Y +L+ + ++K L G D +I VK SGLRGRGGAGFSTG KWSF+ Sbjct: 14 RYWDDPESWTLATYRRHDGYRALEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFI 73 Query: 70 PKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 P+ + PHYLVVNADESEPGTCKD +M PH L+EG +IA++AI A AFIYVR Sbjct: 74 PQGDAGPAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVR 133 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + LQ AV E YA+GLLG N G+D++++VH GAGAYICGEETALL+SLEG+ Sbjct: 134 GEVLPVLRRLQNAVAEAYAAGLLGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGR 193 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+S Sbjct: 194 RGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLS 253 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + IT EL+ + GGIR G L PGGSS P L + +DY Sbjct: 254 GHVTRPGQYEAPLGITLRELL-DYAGGIRAG-HQLKFWTPGGSSTPLLTDEHL-DVPLDY 310 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G+ +GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ RL Sbjct: 311 EGVGGVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARL 370 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + +ID L ++S +I G++ CALGD AA P+ IK+F+ +Q C F Sbjct: 371 ETGKGTREDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFQNEYIAHAEQGG-CPFD 429 >gi|257452669|ref|ZP_05617968.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] Length = 580 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 + RI N + +S+ D + + + + K L E +I E++ SGLRGRGG GF Sbjct: 98 KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 157 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A Sbjct: 158 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 216 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IY+R E+ LQ A+++ G LG + + D+ + GAGA++CGEETAL++ Sbjct: 217 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNLKFGAGAFVCGEETALIQ 276 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ AV GG S CL + Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 394 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 395 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR + I+ Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 513 Query: 421 RC 422 C Sbjct: 514 TC 515 >gi|326777367|ref|ZP_08236632.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus XylebKG-1] gi|326657700|gb|EGE42546.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus XylebKG-1] Length = 459 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 195/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 30 DSWTLDTYRRHEGYEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 89 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 149 LHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 268 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 269 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 325 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + + Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 385 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 435 >gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens PCA] gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens PCA] gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit [Geobacter sulfurreducens KN400] Length = 570 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 155/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 T Q +I N + + + + ++ G +D + L E + + E+ ASGLRGRGGAG Sbjct: 120 FTRQMKIVLANCGSIDPERIEEYVATGGYDALAHALHEMTPEDVCREISASGLRGRGGAG 179 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + G+KW+ K + Y+V N DE +PG DR +M +PH ++EG IA +AIGA Sbjct: 180 YPAGVKWNLARKAPGE-RKYVVANGDEGDPGAYMDRSVMESDPHRILEGMAIAGYAIGAD 238 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IYVRGE+ L+AA+ + GLLGS + I + GAGA++CGEET+L Sbjct: 239 QGYIYVRGEYYLAGRRLEAAIRDAERKGLLGSRVLGSNFSFRIDIRTGAGAFVCGEETSL 298 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+ G++GQP +PP+PA GL+GCPT +NNVE++A VP I+ RGA+WY+G G + G Sbjct: 299 MASIMGRRGQPWHRPPYPAQRGLWGCPTLINNVETLATVPAIIGRGATWYAGIGSTRSPG 358 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+++++G V +E M T E++ GGI GG A GG S C+PA + Sbjct: 359 TKVYALAGQVETAGLIEVPMGTTLREVVFDIGGGIPGG-KRFKAAQSGGPSGGCIPAEHL 417 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ ++ +G+ +G+ +I+MD ++ + F + ESCG+C PCR G+ M Sbjct: 418 -DTPLDYESMERIGTIMGSGGLIIMDETSCMPDVASFFLDFCRDESCGKCIPCRVGSMEM 476 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R++ R+ G A ++ L E+ + ++C LG A P+ ++ FR E I + Sbjct: 477 HRLLRRITSGTAWPDDLRRLEELCDLMGATSLCGLGQTAPNPVVSTLRYFRHEYEAHIRE 536 Query: 419 YHRCN 423 RC Sbjct: 537 -RRCP 540 >gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum] Length = 617 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 148/427 (34%), Positives = 230/427 (53%), Gaps = 7/427 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I T G + S+ D ++ + + K L + ++ +V SGLRGRGG Sbjct: 131 FFKGQVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117 GF TG+KWS K Y+V NADE +PG DR ++ +PH ++EG +IAS+A+G Sbjct: 191 GFPTGLKWSLTQKSPGP-EKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGG 249 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY R E+ L+ A+++ A LG N G DI + GAGAY+CGEET Sbjct: 250 AKKGYIYCRAEYPLAIRHLRKAIEDAKAHNFLGENILGTGLCFDIEIKEGAGAYVCGEET 309 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+ G++G P KPPFPA G++G P+ +NNVE++ + I+ G WY+ +G E Sbjct: 310 ALLASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGDWYASYGSEKT 369 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK F+++G + +E E+I GG+ A GG S C+P Sbjct: 370 KGTKTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVD 429 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D++ + G+ +G+ ++VMD + I+ F + ESCG+CTPCR G+ Sbjct: 430 GL-DTPVDFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSK 488 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ R+ +G Q+ ++D L +S ++ ++C LG AA P+ I+ FR E I Sbjct: 489 IMLDILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI 548 Query: 417 DQYHRCN 423 RC Sbjct: 549 RD-KRCP 554 >gi|282860724|ref|ZP_06269790.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE] gi|282564460|gb|EFB69996.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE] Length = 457 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 195/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 30 EPWTLETYRRHDGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 89 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 149 LHEAVREAYEAGYLGANILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL RG W+ G E + G L+S+SGHV P Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNRGKDWFKSMGSEKSPGFTLYSLSGHVAGPGQY 268 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 269 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 325 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + + Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 385 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ + C F Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHVT-GKGCPFD 435 >gi|182436772|ref|YP_001824491.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465288|dbj|BAG19808.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp. griseus NBRC 13350] Length = 460 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 195/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 31 DSWTLDTYRRHEGYEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 89 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 90 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 149 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 150 LHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 209 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 210 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 269 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 270 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 326 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + + Sbjct: 327 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 386 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 387 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 436 >gi|171316308|ref|ZP_02905529.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MEX-5] gi|171098534|gb|EDT43335.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MEX-5] Length = 436 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirillum seropedicae SmR1] gi|300073885|gb|ADJ63284.1| NADH dehydrogenase I (chain F) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 210/416 (50%), Positives = 269/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65 I +L G L D + RG ++++ +IL + + +I ++KASGLRGRGGAGF TG+K Sbjct: 13 ILADLNGEN-WHLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG +I +A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E + A++E A+G LG N G+ + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFSAYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + G Y+ G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P + M MD Sbjct: 251 SGDVERPGNYEIPLGTPFSTLLELAGGM--RGGKKIKAVIPGGSSAPVIRGDVMMDTTMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGWM R++ER Sbjct: 309 YDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWMYRMVER 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G + ++D+L V+ NI+GRTICALGDAAA P++ +KNFR E I+ H Sbjct: 369 IENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHIEHKH 424 >gi|107023183|ref|YP_621510.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia AU 1054] gi|116690265|ref|YP_835888.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia HI2424] gi|105893372|gb|ABF76537.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia AU 1054] gi|116648354|gb|ABK08995.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia HI2424] Length = 436 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGTEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|115352333|ref|YP_774172.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria AMMD] gi|115282321|gb|ABI87838.1| NADH dehydrogenase subunit F [Burkholderia ambifaria AMMD] Length = 436 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGARKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|222110091|ref|YP_002552355.1| NADH-quinone oxidoreductase subunit F [Acidovorax ebreus TPSY] gi|221729535|gb|ACM32355.1| NADH-quinone oxidoreductase, F subunit [Acidovorax ebreus TPSY] Length = 453 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 215/420 (51%), Positives = 275/420 (65%), Gaps = 11/420 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ L G SL D +RG + + K+L K +D +I +K SGLRGRGGAGF Sbjct: 29 IYAGLNGSN-WSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G Sbjct: 88 TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVG 146 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + E +AA++E A+G LG N + + HHG GAYICGEETALLE Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 206 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V P E + F +L+E G L AVIPGGSS P LPA + Sbjct: 267 IFSVSGDVERPGNYEVPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIIME 324 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM R Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWR 384 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ ++ ++DLL V+ NI+GRTICALGDAAA P++ ++K+FRP E I H Sbjct: 385 VINRIQHEAGRESDLDLLNSVADNIQGRTICALGDAAAMPVRAMLKHFRPEFEALIRNAH 444 >gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 637 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I N + +++ + ++RG + + K L + +I EVK SGLRGRGG Sbjct: 151 FYRKQVKIALRNCGMIDPENMDEYIARGGYTALHKALTTMSPEDVILEVKTSGLRGRGGG 210 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + Y++ N DE +PG DR +M +PH+++EG +I ++AIGA Sbjct: 211 GFPTGTKWESCRRAEGEI-KYVICNGDEGDPGAYMDRSLMEGDPHSVLEGMIIGAYAIGA 269 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IYVR E+ +LQ A+ + +GLLG N G++ DI + GAGA++CGE TA Sbjct: 270 HEGYIYVRNEYPLAVANLQHAIGQAREAGLLGKNILGTGFEFDIKIAKGAGAFVCGESTA 329 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+PR K GL+ P+ +NNVE+ A VP I+ RG W+SG G +++ Sbjct: 330 LMASLEGKAGEPRAKYIHTVEQGLWNRPSNLNNVETWANVPVIIARGGQWFSGIGVKHST 389 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G +N VE M I ++I + GGI GG AV GG S C+P Sbjct: 390 GTKVFSLVGKINNIGLVEVPMGIPLKDIIYEIGGGIPGGRK-FKAVQTGGPSGGCIP-DT 447 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +D+D L E GS +G+ +IVMD T ++ F ESCG+C PCREG Sbjct: 448 MIDLPVDFDSLWEAGSMMGSGGMIVMDDKTCMVDIARYFIEFLVSESCGKCVPCREGIYR 507 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++ + G ++ +++LL +++ I+ ++CALG +A P+ I+ FR + I Sbjct: 508 MNEILQDICAGKGRRGDLELLGRMAEAIKDGSLCALGGSAPNPVLSTIRYFRSEYDAHI- 566 Query: 418 QYHRCN 423 + +C Sbjct: 567 RSKKCP 572 >gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] Length = 626 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 155/427 (36%), Positives = 239/427 (55%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + +S+ + ++ G + K L + + IINE+ + LRGRGG Sbjct: 139 FYKKQTRVALNNCGHINAESIEEYLAEGGYSATTKALFDMTSEEIINEMSEAHLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + K + Y+V N DE +PG DR +M PH +IEG +IA A A Sbjct: 199 GFPTGKKWDQVLKQT-ESEKYIVCNGDEGDPGAFMDRSMMEGNPHGVIEGMIIAGIATKA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IYVR E+ + L+ A+++ GLLG N G+D I ++ GAGA++CGE +A Sbjct: 258 HNGYIYVRAEYPLAVKRLRIAIEQAMEKGLLGDNILNSGFDFHIQINQGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+G PT +NNVE+ V I+ +G WY G ENN Sbjct: 318 LTASIEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFCNVSPIINKGVHWYKTMGTENNY 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296 GTK F+++G+VN +E M T ++I GG++GG AV GG S CL Sbjct: 378 GTKAFALTGNVNNTGLIEVPMGTTLRKIIFDIGGGVKGGE--FKAVQIGGPSGGCLCLRE 435 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +D+D LK++G+ +G+ ++VM+ +++ F ++ESCG+C PCREGT Sbjct: 436 NHLDLTLDFDSLKKVGAMIGSGGLVVMNDKNCMVEMARFFMNFTQNESCGKCIPCREGTR 495 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ +V+G +ID L E+++ I +C LG +AA+P++ ++ FR E + Sbjct: 496 RMLEILNDIVEGKGTLDDIDTLEELAETISDTALCGLGKSAAFPVRSTLRYFRDEYIEHV 555 Query: 417 DQYHRCN 423 +C+ Sbjct: 556 VD-KKCS 561 >gi|325520402|gb|EGC99520.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. TJI49] Length = 436 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVVPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + ++GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] Length = 606 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 144/425 (33%), Positives = 234/425 (55%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q ++ ++ + +++ D + G ++ + K + D II+EV+ SGLRGRGGAG Sbjct: 109 FYAHQQKVALRHIGKIDPENIEDYLKEGGYEALKKAVSMTSDEIISEVEKSGLRGRGGAG 168 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G KW + P Y+ N DE +PG DR I+ +PH +IEG IA+ A+GA Sbjct: 169 FPAGRKWRTAASYEN-FPKYVACNGDEGDPGAFMDRSILEGDPHCVIEGLAIAAVAVGAE 227 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 F Y+R E+ ++ A+++ A G++G + + +++ V G GA++CGE TAL Sbjct: 228 EGFFYIRDEYDLAVRHVKKAIEDAKARGIIGESVMGSSHRLELSVVRGGGAFVCGESTAL 287 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG+ G+PR K GL+ PT +NNVE++A +P I+++G ++ G E + G Sbjct: 288 MASIEGRVGEPRAKYIRSVQRGLWNQPTVLNNVETLANIPVIIKKGGEAFADIGTEGSSG 347 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F++ G V VE M T LI GGI AV GG S C+P M Sbjct: 348 TKVFALVGKVKRTGLVEVPMGTTLRHLIYDIGGGILNN-RAFKAVQTGGPSGGCIPES-M 405 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L + G+ +G+ +IVMD + +++ + F ESCG+CTPCREG M Sbjct: 406 LDLEVDFDSLAKYGAMMGSGGMIVMDDRSCMVEVARYYTNFLCEESCGKCTPCREGLRRM 465 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ + +G ++ +I+LL + + ++ ++C+LG AA P+ I+ FR E I + Sbjct: 466 LEILTDICEGRGREGDIELLERLGRAMQDASLCSLGKTAANPVLTTIQYFREEYEAHIRE 525 Query: 419 YHRCN 423 RC Sbjct: 526 -KRCP 529 >gi|121593382|ref|YP_985278.1| NADH-quinone oxidoreductase subunit F [Acidovorax sp. JS42] gi|120605462|gb|ABM41202.1| NADH dehydrogenase subunit F [Acidovorax sp. JS42] Length = 453 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 214/420 (50%), Positives = 275/420 (65%), Gaps = 11/420 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ L G SL D +RG + + K+L K +D +I +K SGLRGRGGAGF Sbjct: 29 IYAGLNGSN-WSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G Sbjct: 88 TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVG 146 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + E +AA++E A+G LG N + + HHG GAYICGEETALLE Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 206 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V P E + F +L+E G L AVIPGGSS P LPA + Sbjct: 267 IFSVSGDVERPGNYEVPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIIME 324 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM R Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWR 384 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ R+ ++ ++DLL V+ NI+GRTICALGD+AA P++ ++K+FRP E I H Sbjct: 385 VINRIQHEAGRESDLDLLNSVADNIQGRTICALGDSAAMPVRAMLKHFRPEFEALIRNAH 444 >gi|153207266|ref|ZP_01946030.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706359|ref|YP_001423961.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway 5J108-111] gi|212212187|ref|YP_002303123.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212] gi|212218217|ref|YP_002305004.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154] gi|120576754|gb|EAX33378.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154355645|gb|ABS77107.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway 5J108-111] gi|212010597|gb|ACJ17978.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212] gi|212012479|gb|ACJ19859.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154] Length = 422 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 206/415 (49%), Positives = 274/415 (66%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 + L+ + +L S G + + KIL++ + IINE+K S LRGRGGAGF TG+KW Sbjct: 8 YRTLHLEKPWTLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P+ Y++ N+DESEPGT KDRDI+R PH ++EG IA + +GA + ++R Sbjct: 68 SFIPRDKPG-EKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ + +GL+G N G D++I H AGAYICGEETAL+ SLEGK Sbjct: 127 GEFWEPFNRCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGK 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFPAN GLY P+ +NN E+ A VP IL +G W++ G N GTK+FS+S Sbjct: 187 RGWPRFKPPFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVS 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + I F +L+ GG+R G + L AVIPGGSS+P LPA M AIM + Sbjct: 247 GHVAKPGNYEVPLGIPFADLL-ALAGGMREGSE-LKAVIPGGSSMPVLPAEVMMKAIMSF 304 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DGL E GS LG+ V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ Sbjct: 305 DGLVEAGSMLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRI 364 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 KG KR+I+ L V+K IEGRTICA G+AAAWP+ G++K+F E + Sbjct: 365 EKGEGTKRDIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTHGK 419 >gi|257466530|ref|ZP_05630841.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 580 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 + RI N + +S+ D + + + + K L E +I E++ SGLRGRGG GF Sbjct: 98 KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 157 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A Sbjct: 158 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 216 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IY+R E+ LQ A+++ G LG + + D+ + GAGA++CGEETAL++ Sbjct: 217 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDLKFGAGAFVCGEETALIQ 276 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ AV GG S CL + Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 394 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 395 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR + I+ Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 513 Query: 421 RC 422 C Sbjct: 514 TC 515 >gi|254425647|ref|ZP_05039364.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Synechococcus sp. PCC 7335] gi|196188070|gb|EDX83035.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Synechococcus sp. PCC 7335] Length = 534 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 147/418 (35%), Positives = 234/418 (55%), Gaps = 5/418 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 Q + N + + + D ++ + + ++L E D + + SGLRGRGGAG Sbjct: 120 FTQQQHIVLENSGKVDPEKIEDYVALQGYAALYRVLREYSPDEVTKAIAQSGLRGRGGAG 179 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + TG+KW + K+ Y+V NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 180 YPTGLKWETVAKMPPG-QKYVVCNADEGDPGAYMDRSVLESDPHRVLEGMAIAAYAVGAT 238 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IYVRGE+ LQ A+ + GLLGS D I + GAGA++CGEETAL Sbjct: 239 QGYIYVRGEYPLAINHLQTAIQQARKHGLLGSQIFDSPLDFRIDLRIGAGAFVCGEETAL 298 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++G P +PP+PA GL+G PT +NNVE+ A + I+R GA W++G G ++G Sbjct: 299 MASIEGRRGIPEQRPPYPAESGLWGRPTLINNVETYANIAPIIRNGADWFAGIGTGKSKG 358 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+FS++G V +E M I+ +++ GG ++ AV GG S C+PA Sbjct: 359 TKVFSLTGKVQNAGLIEVPMGISLQAIVDDIGGG-AAAGRSVKAVQTGGPSGGCIPASA- 416 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ LK++GS +G+ +IVMD T ++ F ESCG+C PCR GT + Sbjct: 417 FETSVDYESLKQLGSIMGSGGLIVMDDQTSMVDVARYFMEFCMEESCGKCIPCRAGTVQL 476 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ + +G A ++ L ++ ++ ++C LG AA P+ ++ FR + Sbjct: 477 YQLLCKFTQGQANSADLTQLEQLCDMVKHTSLCGLGQAAPNPVISTLQYFRGEYLALM 534 >gi|206560698|ref|YP_002231463.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315] gi|198036740|emb|CAR52640.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315] Length = 436 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFAVLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|253702590|ref|YP_003023779.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251777440|gb|ACT20021.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 593 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 168/426 (39%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 + Q R+ T + + LS + + ++K + E +I+EVK SGLRGRGG Sbjct: 109 FVDQQMRVVMTGCGQIDPELLSAYLEEDGFKAIEKCVKEMKPAEVIDEVKKSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKWSF YL+ NADE +PG DR I+ +P+ +IEG +IA++AIG Sbjct: 169 GFPTGMKWSFCA-ASPGNHKYLICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGC 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + LQ A+D CY G LG N G+D D+ + GAGA++CGEETA Sbjct: 228 DAGYVYVRAEYPLAIDRLQKALDVCYEKGYLGKNIQGWGFDFDMRIKKGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ G+ WY+ G + + Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVRHIINNGSEWYAALGTDTTK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE ++ ++I K CGGI AV GG S C+PA Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F K ESCG+C PCR G Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTKMESCGKCVPCRIGLKA 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +ID L E+ I+ ++C LG A PI +K FR E I Sbjct: 466 MLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRNEYEAHII 525 Query: 418 QYHRCN 423 RC Sbjct: 526 D-KRCP 530 >gi|186476759|ref|YP_001858229.1| NADH-quinone oxidoreductase subunit F [Burkholderia phymatum STM815] gi|184193218|gb|ACC71183.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phymatum STM815] Length = 442 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 208/418 (49%), Positives = 268/418 (64%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D + RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWHLQDYVERGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA++E +G LG N G+ + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALEEARTAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G+ +K ++DLL V++NI GRTICALGDAAA P++G++K++ E + RC Sbjct: 369 IEHGLGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAN-KRC 425 >gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Moorella thermoacetica ATCC 39073] Length = 619 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 164/428 (38%), Positives = 248/428 (57%), Gaps = 7/428 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + +S+ + ++ + + K+L +I +K SGLRGRGG Sbjct: 133 FFKHQVRIALRNCGLIDPESIGEYIAHDGYQALSKVLTTMKPYEVIETIKKSGLRGRGGG 192 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + Y V NADE +PG DR I+ +PH ++EG I ++AIGA Sbjct: 193 GFPTGLKWEFAYRSPGP-VKYFVCNADEGDPGAFMDRSILEGDPHAVLEGMAIGAYAIGA 251 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + GLLG N G+D DI + GAGA++CGEETA Sbjct: 252 SQGYIYVRAEYPVAVQRLKLAISQAREQGLLGKNLFNSGFDFDIDIRLGAGAFVCGEETA 311 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR +PPFPA GL+G PT +NNVE++A +PTI+R+G W++G G E ++ Sbjct: 312 LLASIEGRRGEPRPRPPFPAVSGLWGKPTVINNVETLANIPTIIRQGWEWFAGIGTEKSK 371 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M + ++I + G G A GG S C+PA Sbjct: 372 GTKVFALAGKINNNGLVEIPMGTSLRQVIYEIGG-GIPGGKKFKAAQTGGPSGGCIPAEH 430 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A +DY+ L +G+ +G+ +I+MD T ++ F K ESCG+CTPCR GT Sbjct: 431 L-DAPIDYENLTALGTIMGSGGLIIMDEDTCMVDVAKFFMDFVKDESCGKCTPCRIGTTR 489 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G +++++DLL E+++ I+ +C LG A P+ I FR I Sbjct: 490 MLEILNRITRGQGEEKDLDLLVELARQIKDTALCGLGQTAPNPVLSTITYFRDEYLAHIR 549 Query: 418 QYHRCNFQ 425 HRC Sbjct: 550 D-HRCPAH 556 >gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] Length = 626 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +Q+RI N L + +++ ++ ++ + ++L D I+E+K SGLRGRGG Sbjct: 140 FYKNQERIALRNCGLLNPEDITEYIAMNGYEALGRVLTQMTPDSTIDEIKKSGLRGRGGG 199 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K SD +++ NADE +PG DR I+ +P++++E IA + IGA Sbjct: 200 GFPTGVKWEMTRKSKSD-TKFMICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGA 258 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY+R E+ L+ A+ + Y GLLG N + I + +GAGA+ICGEETA Sbjct: 259 NKGYIYIRAEYPLAINRLKIALKQAYNLGLLGDNILGTNFSFHIDLKYGAGAFICGEETA 318 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P +KPPFP+ +GL+ PT +NNVE++A +P I+ +G+ W+S G E ++ Sbjct: 319 LINSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIPPIILKGSKWFSSIGTEKSK 378 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M IT E+I GGIR G AV GG S C+PA Sbjct: 379 GTKVFALAGKINNVGLVEVPMGITLREIIYNLGGGIR-GGKKFKAVQTGGPSGGCIPADH 437 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L E+GS +G+ +IVMD ++ F ESCG+CT CR G Sbjct: 438 L-DTAIDYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGKCTACRIGNKR 496 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++E + KG ++ L ++S I+ +C LG + PI +K F + Sbjct: 497 LLEILEDITKGKGTMEHLEGLKDLSYVIKDSALCGLGQTSPNPIISTMKFFWDEYVAHVK 556 Query: 418 QYHRCN 423 RC Sbjct: 557 D-KRCP 561 >gi|294630801|ref|ZP_06709361.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14] gi|292834134|gb|EFF92483.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14] Length = 456 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 202/425 (47%), Positives = 261/425 (61%), Gaps = 15/425 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 D+DR +L ++ + K L D +I VK SGLRGRGGAGF Sbjct: 30 FWDEDR---------SWTLDVYRRHEGYEGLRKALAMSPDDVIAYVKESGLRGRGGAGFP 80 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW F+P+ +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + A Sbjct: 81 TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHA 139 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+RGE + L +AV E YA+G LG N G D+DI VH GAGAYICGEETALL+ Sbjct: 140 FIYLRGEVVPVLRRLHSAVREAYAAGYLGENVLGSGLDLDITVHAGAGAYICGEETALLD 199 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++GQPRL+PPFPA GLY CPT VNNVESIA VP IL+ G W+ G E + G Sbjct: 200 SLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILKNGKDWFRSMGSEKSPGFT 259 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+S+SGHV P E + IT +L++ G L PGGSS P + Sbjct: 260 LYSLSGHVAGPGQYEAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 316 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+G+ GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++ Sbjct: 317 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 376 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ + G + ++D L +++ NI G++ CALGD AA PI +K FR EE I Sbjct: 377 LLRDIEAGKGRMTDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRAEYEEHITGRG 436 Query: 421 RCNFQ 425 C F Sbjct: 437 -CPFD 440 >gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans] Length = 617 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 148/427 (34%), Positives = 233/427 (54%), Gaps = 7/427 (1%) Query: 1 MLTDQDRIFTN-LYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I + L + S+ D ++ + + K+L + +I+EV SGLRGRGG Sbjct: 131 FFKGQVKIVSKPLGMIDPLSIDDYIAMDGYAALRKVLSSMTPEQVIDEVTKSGLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117 GF TG+KW+ K Y+V NADE +PG DR ++ +PH++IEG ++A+FA+G Sbjct: 191 GFPTGVKWNLTRKAPGP-EKYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMILAAFAVGH 249 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY R E+ + LQ A+++ LG N D+ + GAGAY+CGEET Sbjct: 250 ARKGYIYCRAEYPLAIKRLQKAINDARERNFLGDNILGSDLSFDLEIKEGAGAYVCGEET 309 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL SL G++G P KPPFPA G++G P+ +NNVE++A + I+ G WY+ +G E Sbjct: 310 ALLASLMGERGMPWPKPPFPAQKGVWGKPSVINNVETLANIGHIILGGGEWYASYGSEKT 369 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK F+++G + +E E++ GG+ A GG S C+P Sbjct: 370 KGTKTFALTGSIKNTGLIEVPAGTPLREIVFSIGGGMVEKKIPFKAAQLGGPSGGCIPTS 429 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D++ + G+ +G+ ++VMD + I+ F + ESCG+CTPCR G+ Sbjct: 430 GL-DTPVDFENVVSAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSK 488 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ R+ +G Q+ ++D L +S I+ ++C LG AA P+ I+ FR E I Sbjct: 489 IMLDILTRITEGKGQEGDLDELVRLSMYIKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI 548 Query: 417 DQYHRCN 423 RC Sbjct: 549 RD-KRCP 554 >gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 617 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 147/427 (34%), Positives = 229/427 (53%), Gaps = 7/427 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I T G + S+ D ++ + + K L + ++ +V SGLRGRGG Sbjct: 131 FFKGQVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117 GF TG+KWS K ++V NADE +PG DR ++ +PH ++EG +IAS+A+G Sbjct: 191 GFPTGLKWSLTQKSPGP-EKFVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGG 249 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY R E+ L+ A+ + A LG N G DI + GAGAY+CGEET Sbjct: 250 AKKGYIYCRAEYPLAIRHLRKAIQDAKAHNFLGDNILGTGLCFDIEIKEGAGAYVCGEET 309 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+ G++G P KPPFPA G++G P+ +NNVE++ + I+ G WY+ +G E Sbjct: 310 ALLASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGEWYASYGSEKT 369 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK F+++G + +E E+I GG+ A GG S C+P Sbjct: 370 KGTKTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVD 429 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D++ + G+ +G+ ++VMD + I+ F + ESCG+CTPCR G+ Sbjct: 430 GL-DTPVDFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSK 488 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ R+ +G Q+ ++D L +S ++ ++C LG AA P+ I+ FR E I Sbjct: 489 IMLDILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI 548 Query: 417 DQYHRCN 423 RC Sbjct: 549 RD-KRCP 554 >gi|86359331|ref|YP_471223.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN 42] gi|86283433|gb|ABC92496.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN 42] Length = 420 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 189/423 (44%), Positives = 259/423 (61%), Gaps = 7/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS + G + + K+L E D ++ VK S LRGRGGAGF TG Sbjct: 3 EPILLKNVDVPGGHLLSTYEAGGGYQALVKVLREYTPDEVVELVKRSNLRGRGGAGFLTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PK S +P YL NADE EPGT KDR +M +PH LIEG ++++AIGA A++ Sbjct: 63 MKWSFVPKQSS-KPKYLCCNADEGEPGTFKDRILMERDPHQLIEGLAVSAYAIGAKTAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ L+ A+ E +A G LGS ++ + +H GAGAYICGEETA+LESL Sbjct: 122 YIRGEYVTAIRRLEQAIAEAHAKGYLGSRILGSDFNFTVHIHCGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++ QPRLKPPFPA GLY PT +NNVE++A VP I+ RG+ W+ G E + G KL+ Sbjct: 182 EGRRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVVRGSDWFRDIGPEKSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I EL++ G + AVIPGG S P +P + Sbjct: 242 CVSGQVRKPGLYELPMGIPLRELVDHAGG--PPPGRRIKAVIPGGVSAPVIPEHGL-DVG 298 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++++ Sbjct: 299 MDFDSLAAAGSMLGSAGVIVIDNSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKIL 358 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G +++ L + K I G T CALGD AA ++ +K+FR I++ RC Sbjct: 359 RRIEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRC 417 Query: 423 NFQ 425 Sbjct: 418 PLH 420 >gi|322421845|ref|YP_004201068.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320128232|gb|ADW15792.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 593 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q R+ T + + + + + ++K ++ +++EVK SGLRGRGG Sbjct: 109 FVDQQMRVVMTGCGQIDPERIDAFLEEDGFKAIEKCVKDMTPAQVVDEVKKSGLRGRGGG 168 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TGMKWSF YL+ NADE +PG DR I+ +P+ +IEG +IA++AIG Sbjct: 169 GFPTGMKWSFCA-ASPGNHKYLICNADEGDPGAFMDRSILEGDPYCVIEGMMIAAYAIGC 227 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + LQ A+D CY G LG N G+D D+ + GAGA++CGEETA Sbjct: 228 DAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFDFDMRIKKGAGAFVCGEETA 287 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT +NNVE+ A V I+ +GA WY+ G E + Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVRHIINKGADWYASLGTETTK 347 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE ++ ++I + CGGI AV GG S C+P+ Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRDVIYQVCGGIANNRK-FKAVQAGGPSGGCIPSEV 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F K ESCG+C PCR G Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTKMESCGKCVPCRIGLKA 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ +G + +ID L E+ I+ ++C LG A PI +K FR E I Sbjct: 466 MLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRHEYEAHIL 525 Query: 418 QYHRCN 423 RC Sbjct: 526 D-KRCP 530 >gi|167562182|ref|ZP_02355098.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis EO147] Length = 436 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 203/416 (48%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA++E +G LG + G+ + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALEEARRAGFLGDDIMGSGFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|165918808|ref|ZP_02218894.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 334] gi|165917532|gb|EDR36136.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA 334] Length = 422 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 206/415 (49%), Positives = 275/415 (66%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 + L+ + +L S G + + KIL++ + IINE+K S LRGRGGAGF TG+KW Sbjct: 8 YRTLHLEKPWTLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P+ + Y++ N+DESEPGT KDRDI+R PH ++EG IA + +GA + ++R Sbjct: 68 SFIPRDKTG-EKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + A+ + +GL+G N G D++I H AGAYICGEETAL+ SLEGK Sbjct: 127 GEFWEPFNRCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGK 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR KPPFPAN GLY P+ +NN E+ A VP IL +G W++ G N GTK+FS+S Sbjct: 187 RGWPRFKPPFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVS 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + I F +L+ GG+R G + L AVIPGGSS+P LPA M AIM + Sbjct: 247 GHVAKPGNYEVPLGIPFADLL-ALAGGMREGSE-LKAVIPGGSSMPVLPAEVMMKAIMSF 304 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DGL E GS LG+ V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ Sbjct: 305 DGLVEAGSMLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRI 364 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 KG KR+I+ L V+K IEGRTICA G+AAAWP+ G++K+F E + Sbjct: 365 EKGEGTKRDIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTHGK 419 >gi|121998539|ref|YP_001003326.1| NADH-quinone oxidoreductase subunit F [Halorhodospira halophila SL1] gi|121589944|gb|ABM62524.1| NADH dehydrogenase subunit F [Halorhodospira halophila SL1] Length = 426 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 199/421 (47%), Positives = 270/421 (64%), Gaps = 8/421 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +T L + SL G + ++++L +++EVK S LRGRGGAGF G+KW Sbjct: 7 YTTLGYDEPWSLETYRKVGGYRALERVLRTPMSPQEVVDEVKQSALRGRGGAGFPPGIKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 FMP+ + YL+ N+DESEPGTCKD DI+R PH ++EG +IA +A+GA + Y+R Sbjct: 67 GFMPRDRAG-QKYLICNSDESEPGTCKDHDILRFNPHAVVEGMIIAGYAMGATVGYNYLR 125 Query: 127 GEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GEF E E ++ AV E +G LG + G+D ++ H+GAGAYICGEE+AL+ESLEG Sbjct: 126 GEFHHEPFERMEQAVAEARKAGYLGRDILGSGFDFELHNHYGAGAYICGEESALMESLEG 185 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA VG+YG PTT+NN E++A VP ++R GA W+ G+ NN G K+FS+ Sbjct: 186 KKGQPRYKPPFPAQVGIYGKPTTINNTETLASVPAVIRNGAEWFLNLGKPNNGGEKIFSV 245 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHV P E M F EL+E G L AVIPGGSS P +P M MD Sbjct: 246 SGHVACPGNYEIPMGTPFRELLEMAGG--VRAGHRLKAVIPGGSSTPVVPGETMLETDMD 303 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + GS LG+ AV+V+D +TD+++ + R++ FY ESCGQCTPCREGTGW+ R ++R Sbjct: 304 YDSIAAAGSMLGSGAVVVIDETTDMVRILARITRFYYAESCGQCTPCREGTGWLYRAVQR 363 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + +G ++ +L EV I G TICA G+AAA P+Q I++FR E I ++ R Sbjct: 364 IYEGRGTYDDLRMLEEVPGQIAGHTICAFGEAAATPVQSFIQHFRHEFEHYI-EHGRSPV 422 Query: 425 Q 425 + Sbjct: 423 E 423 >gi|117926904|ref|YP_867521.1| NADH-quinone oxidoreductase, F subunit [Magnetococcus sp. MC-1] gi|117610660|gb|ABK46115.1| NADH dehydrogenase subunit F [Magnetococcus sp. MC-1] Length = 424 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 235/416 (56%), Positives = 297/416 (71%), Gaps = 3/416 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 +F N++ +L+ + +G + ++K L + II EVK++GLRGRGGAGF G+KWS Sbjct: 8 LFKNIHIQGQNTLAVAQQQGAYKRMEKALGMSGEEIIQEVKSAGLRGRGGAGFPAGLKWS 67 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F+PK RP YLV NADE EPGTCKDRD+MR +PH LIEG +IA +A+ + +IY+RG Sbjct: 68 FIPKDDP-RPKYLVCNADEGEPGTCKDRDLMRFDPHLLIEGMIIAGYAVNSKQGYIYIRG 126 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 EF RE E L+AAV E YA+ LLG N G D D+ VH GAGAY+CGEE+ALL SLEG+K Sbjct: 127 EFYREAEVLEAAVAEAYAANLLGKNILGKGVDFDLAVHRGAGAYVCGEESALLNSLEGEK 186 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPRLKPPFPANVGLYGCPT +NNVE++ VP IL +G +WYS G E + GTKLFS+SG Sbjct: 187 GQPRLKPPFPANVGLYGCPTVINNVETLCAVPAILEKGGAWYSKLGVEKSSGTKLFSVSG 246 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HVN P E + I LI + GG+RGGW+NL VIPGGSS P L Q +M Y+ Sbjct: 247 HVNKPGNYEVELGIPLKSLINDYAGGVRGGWENLKGVIPGGSSTPVLIPEQCETILMSYE 306 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L GS LG +VIVMD+ST I+KAI RLS FY+HESCGQCTPCREGTGW+ ++M+R+ Sbjct: 307 ALAGAGSMLGAGSVIVMDKSTCIVKAIARLSKFYRHESCGQCTPCREGTGWLAQIMDRIE 366 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 G ++ +IDLL V NI+G+TICALGDAAA P+ G I++FR E + ++ RC Sbjct: 367 TGQGREGDIDLLLSVCSNIQGKTICALGDAAAMPVVGAIRHFRDEFEYHV-KHGRC 421 >gi|239943481|ref|ZP_04695418.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL 15998] gi|239989935|ref|ZP_04710599.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL 11379] gi|291446952|ref|ZP_06586342.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998] gi|291349899|gb|EFE76803.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998] Length = 459 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 195/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 30 ESWTLDTYRRHEGYEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 89 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG+N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 149 LHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 268 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 269 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 325 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + + Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 385 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 435 >gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 634 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 245/426 (57%), Gaps = 8/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R I + + KS+ D ++ G + + K+L + + ++ EVK S LRGRGG Sbjct: 131 FYKNQQRNILSENIRIDSKSIDDYLAIGGYSALSKVLFKMTPEEVMGEVKKSNLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF KW + D Y++VNADE +PG DR ++ PH+++EG +I ++A+GA Sbjct: 191 GFPAWRKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H FIYVR E+ ++ A+ + GL+G N +D + VH GAGA++CGE +A Sbjct: 250 HEGFIYVRQEYPLAVVNINLAIRQAEERGLVGKNILGSNFDFTVKVHMGAGAFVCGESSA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ +LEG+ G+PR K A G++ P+ +NNVE+ A V I+ +GA W++ FG E ++ Sbjct: 310 LMTALEGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIINKGADWFTQFGTEGSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G + VE M +T ++ ++ GG G AV GG S C+P Q Sbjct: 370 GTKIFSLVGKITNTGLVEVPMGVTLKDI-IQNIGGGIPGGKKFKAVQTGGPSGGCIPEAQ 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++D+D L + GS +G+ +IVMD T ++ F K ESCG+CTPCREG Sbjct: 429 L-DLVVDFDQLTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++V+ + G ++ +I+LL E++++ G +CALG +A P+ I+ FR E I Sbjct: 488 MLKVLTNITTGKGKEGDIELLEELAES-TGAALCALGKSAPNPVLSTIRYFREEYEAHI- 545 Query: 418 QYHRCN 423 ++ +C Sbjct: 546 RHKKCP 551 >gi|218515777|ref|ZP_03512617.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli 8C-3] Length = 446 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 197/423 (46%), Positives = 261/423 (61%), Gaps = 6/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS + G + + K+L E D +I+ VK S LRGRGGAGF TG Sbjct: 28 EPILLKNVDVRDGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTG 87 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++ Sbjct: 88 MKWGFVPKRT-GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 146 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ L+ A+ E +A G LG ++ + +H GAGAYICGEETA+LESL Sbjct: 147 YIRGEYVTAIRRLEQAIAEAHAKGYLGKRILGSDFNFAVRIHCGAGAYICGEETAMLESL 206 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RGA W+ G G E + G KL+ Sbjct: 207 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPEKSPGPKLY 266 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I EL+E H GG+ + AVIPGG S P +P + Sbjct: 267 CLSGQVRKPGLYELPMGIALRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPEHGLE-VG 324 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++V+ Sbjct: 325 MDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIVEFFHHESCGKCTPCREGLNWVVKVL 384 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G +++ L + K I G T CALGD AA ++ + +FR ID HRC Sbjct: 385 RRIEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIDD-HRC 443 Query: 423 NFQ 425 F Sbjct: 444 PFH 446 >gi|134296428|ref|YP_001120163.1| NADH-quinone oxidoreductase, F subunit [Burkholderia vietnamiensis G4] gi|134139585|gb|ABO55328.1| NADH dehydrogenase subunit F [Burkholderia vietnamiensis G4] Length = 436 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|170698114|ref|ZP_02889194.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria IOP40-10] gi|172061204|ref|YP_001808856.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MC40-6] gi|170136972|gb|EDT05220.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria IOP40-10] gi|171993721|gb|ACB64640.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria MC40-6] Length = 440 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M +D Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|124266601|ref|YP_001020605.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124259376|gb|ABM94370.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 448 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 213/424 (50%), Positives = 272/424 (64%), Gaps = 13/424 (3%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-------KGRDWIINEVKASGLRGRGGAGF 60 I L G L D +RG + + +IL+ D +I EVKASGLRGRGGAGF Sbjct: 25 IVAGLDGRN-WRLKDYEARGGYQALRRILQGGEGVEPMTPDQVIAEVKASGLRGRGGAGF 83 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMP+ YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G Sbjct: 84 PTGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILAYNPHIVIEGMIIAAYAMGISV 142 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 + Y+ GE E + A++E A+G LG+ + + HG GAYICGEETALL Sbjct: 143 GYNYIHGEIFEIYERFEEALEEARAAGYLGNAILGSAHSFQLHAFHGFGAYICGEETALL 202 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GT Sbjct: 203 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGT 262 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+ G V P E + F L+E G G L AVIPGGSS P LPA M Sbjct: 263 KIFSMVGDVERPGNYEIPLGTPFSTLLELAGG--VKGGRGLKAVIPGGSSAPVLPASIMM 320 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY+HESCGQCTPCREGTGW+ Sbjct: 321 NTTMDYDSIAKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYQHESCGQCTPCREGTGWLW 380 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R+++R+ +G + +IDLL V+ NI+GRTICALGDAAA P++ +IK+FR I ++ Sbjct: 381 RMVDRIERGHGRMEDIDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFREEFVHHI-EH 439 Query: 420 HRCN 423 C Sbjct: 440 KTCT 443 >gi|198284341|ref|YP_002220662.1| NADH-quinone oxidoreductase subunit F [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667549|ref|YP_002427003.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248862|gb|ACH84455.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519762|gb|ACK80348.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 427 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 208/415 (50%), Positives = 265/415 (63%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 N LS G +D + ++L D II+E+K S LRGRGGAGF TG+KW Sbjct: 8 LQNRGLPDSHRLSVYAGTGGYDALRRVLLDSMAPDQIISEIKKSALRGRGGAGFPTGLKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMPK + YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA +I++R Sbjct: 68 SFMPKGVTG-TKYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGASTGYIFIR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF+ ++ A++E YA G LG N + D+ VH GAGAYICGEETAL+E+LEGK Sbjct: 127 GEFVEPIHIVEGALEEAYAKGYLGQNILGTDFSFDLYVHRGAGAYICGEETALMEALEGK 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NNVE+ A VP+I+ +G W+ G+ NN GTK+FS++ Sbjct: 187 KGQPRFKPPFPASYGLYGQPTTINNVETFASVPSIIAKGGEWFLNLGKPNNGGTKIFSVT 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M F EL+E G L AVIPGG+S P + M MDY Sbjct: 247 GHVQRPGNYEVPMGTPFKELLEMAGG--LRPGRQLKAVIPGGTSTPMVGGEAMMAVTMDY 304 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG +VIV+D S I+K + R++ FY HESCGQCTPCREG GW+ RVM RL Sbjct: 305 DSIAKSGSALGAGSVIVIDDSVCIVKVVERIARFYMHESCGQCTPCREGMGWLWRVMHRL 364 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G ++ ++ LL +V IEGRTICAL D P+ ++ FR E I H Sbjct: 365 ENGQGREEDLQLLLDVGSRIEGRTICALADGGVAPVVSSVRLFREEYEYHIRHKH 419 >gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] Length = 628 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 159/425 (37%), Positives = 245/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + + ++ G + + K+L E + ++ EV S LRGRGG Sbjct: 141 FYKRQTRLVLENCGHIDAEHIEEYIAHGGYKALGKVLFEMKPEEVVQEVLDSNLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + + + Y+V N DE +PG DR IM +PH +IEG +IA++A+GA Sbjct: 201 GFQTGYKWSQVARQP-ETTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG + G+ + ++ GAGA++CGE +A Sbjct: 260 QEGYIYVRAEYPLAISRLKLAIRQAQERGLLGDDILGSGFSFRLHINRGAGAFVCGEGSA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ A VP I+ RGA WY G EN+ Sbjct: 320 LTASIEGNRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIISRGADWYKTIGPENSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G V +E M T E+I GGI+G + AV GG S CL Sbjct: 380 GTKAFALTGSVKNTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITQH 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 439 L-DISLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V+G ++ ++D L E+++ I +C LG +AA P+ +K FR E + Sbjct: 498 MLEILERIVQGNGREEDLDTLDELARTITETALCGLGKSAALPVMSTLKLFREEYMEHVV 557 Query: 418 QYHRC 422 + +C Sbjct: 558 E-KKC 561 >gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium sp. D12] gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12] gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12] Length = 594 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 152/422 (36%), Positives = 235/422 (55%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 + R+ N + +S+ D ++ G + + K L E + +I E++ +GLRGRGG GF Sbjct: 112 KQERRVLRNCGLINPESIEDYLAEGGFLAIQKALTEMTPEQVIEEIQKAGLRGRGGGGFP 171 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW K + Y+V NADE +PG DR I+ +P +IEG +IA +AIGA A Sbjct: 172 TGNKWEIALKQAGE-EKYIVCNADEGDPGAFMDRSILEGDPCGVIEGMMIAGYAIGASQA 230 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ L+ A+++ G LG N + D+ + GAGA++CGEETAL++ Sbjct: 231 LVYIRAEYPLAISRLEKAIEQARKKGYLGKNVFGTSFSFDVTLKFGAGAFVCGEETALIQ 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I+R G+ W+ G E++ GTK Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIRYGSDWFREIGTESSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I GGI+ AV GG S CL + Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIFDIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 408 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 409 ISIDFDSLSAKGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G + ++ LL E+S I+ ++C LG + P+ +K FR + I+ Sbjct: 469 ILSRITEGEGRMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 527 Query: 421 RC 422 C Sbjct: 528 TC 529 >gi|310818918|ref|YP_003951276.1| NADH dehydrogenase I subunit f [Stigmatella aurantiaca DW4/3-1] gi|309391990|gb|ADO69449.1| NADH dehydrogenase I, subunit F [Stigmatella aurantiaca DW4/3-1] Length = 445 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 198/419 (47%), Positives = 270/419 (64%), Gaps = 14/419 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q +L RG ++++ K LE II+EVK S LRGRGGAGF TG+KWSF+PK + Sbjct: 19 QSWTLEHYRKRGGYESLKKALEMAPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NP 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YL VNADESEPGT KDR I+ +PH ++EG IA++A+G H +IY+RGEF + Sbjct: 78 KPKYLTVNADESEPGTFKDRYILSLDPHMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQR 137 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 QAA+ E YA+G+ G Y+++ + GAGAYICGEETALLESLEGKKG PRLKPP Sbjct: 138 TQAAIQEAYAAGIFGKTLLGRDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKPP 197 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA VGL+G PT +NNVE+++ VP I RGA WYS G + + GT+L +SG VN P Sbjct: 198 FPAVVGLFGSPTVINNVETLSNVPHIFARGADWYSKLGTDKSGGTRLVCLSGTVNRPGVY 257 Query: 255 EESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + T ELI +K+ G+ G ++ AVIPGGSS P L ++ ++++ L+ Sbjct: 258 EIPLQTTVSELIFGDKYGQGLPAG-RSVKAVIPGGSSAPVLSPNEL-DVALEFEALRLKQ 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + G+ VIVMD ++ +++ +WR++ FY ESCGQCTPCREGT W R++ ++ +G + Sbjct: 316 TMAGSGGVIVMDDTSCMVRCLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGEM 375 Query: 373 REIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +I++L V+ +I G TICALGDAAA P + FR E I + RC F Sbjct: 376 ADIEMLSHVASSIAPYPPMGLGNTICALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 433 >gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822] gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822] Length = 546 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 149/421 (35%), Positives = 248/421 (58%), Gaps = 7/421 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI G + + ++ G + ++ K L + ++ E+ SGLRGRGG Sbjct: 112 FFSRQVRIVREHTGKVDPDRIESYIAVGGYQSLYKTLYDMTPQQVVEEITKSGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ + Y++ N DE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 172 GYPTGLKWATVAKMP-GKQKYVICNGDEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ + G+LGS + +D + + GAGA++CGEETA Sbjct: 231 DHGYIYVRAEYPLAIKRLEKAIQQAKKYGILGSQIFESHFDFKVDIRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PP+PA +GL+ CPT +NNVE+ A + I+R G +WY+ G E ++ Sbjct: 291 LIHSIEGKRGTPRTRPPYPAELGLWECPTLINNVETYANIAPIIREGGNWYASIGTETSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT E++E+ GGI G + AV GG S C+PA Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGIVDG--EVKAVQTGGPSGGCIPAD- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++GS +G+ ++VMD +T +++ F + ESCG+C PCR GT Sbjct: 408 LLDTPVDYNSLGKLGSMMGSGGMVVMDENTSMVEVAKFYMEFCQEESCGKCVPCRAGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ +LV A K +++ L + ++ ++C LG +A PI ++ FR E + Sbjct: 468 MYEILNKLVNRQATKTDLEKLEALCLVVKETSLCGLGQSAPNPILSTLRYFRAEYEALLQ 527 Query: 418 Q 418 + Sbjct: 528 E 528 >gi|239816478|ref|YP_002945388.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110] gi|239803055|gb|ACS20122.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110] Length = 446 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 219/418 (52%), Positives = 279/418 (66%), Gaps = 7/418 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 + +I+ L G L+D +RG + + KIL +G D +I EVKASGLRGRGGAGF T Sbjct: 25 EPQIYAGLNGTN-WRLADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N+DE EPGTCKDRDI++ PH +IEG IA++A+G + Sbjct: 84 GLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE + + + A++E A+G LG Y+ + HG GAYICGEETALLES Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLGDKIMGSTYNFQLHAAHGFGAYICGEETALLES 202 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G Y G+ NN GTK+ Sbjct: 203 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGQAYLECGKPNNGGTKI 262 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 +S+SG V P E M F +L+E CGG+R G L AVIPGGSS P LPA M Sbjct: 263 YSVSGDVELPGNYEVPMGTPFSKLLE-LCGGVRKG-RTLKAVIPGGSSSPVLPASIMMEC 320 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ RV Sbjct: 321 TMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLRRLSYFYMHESCGQCTPCREGTGWLYRV 380 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++R+ G + ++DLL V+ NI+GRTICALGDAAA P++ +IK+FR E I Y Sbjct: 381 VDRIHNGQGRASDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438 >gi|325261423|ref|ZP_08128161.1| protein HymB [Clostridium sp. D5] gi|324032877|gb|EGB94154.1| protein HymB [Clostridium sp. D5] Length = 1042 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 157/427 (36%), Positives = 240/427 (56%), Gaps = 7/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N ++ SL ++R + + K+L ++ ++ +K SGLRGRGGA Sbjct: 141 FFEGQIRIALRNCGRMEFSSLEAYIARDGYGAIAKVLGGMSQEDVVAVIKNSGLRGRGGA 200 Query: 59 GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW K S D ++V NADE +PG DR ++ +PH++IEG ++ +AIG Sbjct: 201 GFPTGVKWEAGRKAQSPDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIG 260 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ E L A+D+ A+G+LG N G+D D+ + GAGA++CGEET Sbjct: 261 ASRGYIYVRAEYPIAVERLGNAIDQARAAGILGKNIMGSGFDFDVEIRIGAGAFVCGEET 320 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 +LL S+EG++G+PR KPPFP GL+ CPT +NNVE++A V I+ G+ WY G + Sbjct: 321 SLLASIEGRRGEPRQKPPFPFEKGLFECPTIINNVETLANVAPIILNGSEWYRKIGTAGS 380 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+F+++G + +E M ++ GG G A+ GG S CL Sbjct: 381 AGTKVFALAGDIVNAGIIEVPMGTVLGDI-IYKIGGGIIGGKRFKAIQSGGPSGGCLTRA 439 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DYD L E+G+ +G+ ++VM+ T ++ F ESCG+C PCR GT Sbjct: 440 HL-NTRVDYDSLAELGAIMGSGGLVVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 498 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++E + +G + ++DLL E+++ I+ +C LG A P+ +K FR E I Sbjct: 499 RMLELLEGITEGKGRPEDLDLLEELAETIKQTAMCGLGQTAPNPVLSTLKYFRGEYESHI 558 Query: 417 DQYHRCN 423 C Sbjct: 559 YD-KYCP 564 >gi|257054397|ref|YP_003132229.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017] gi|256584269|gb|ACU95402.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017] Length = 424 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 201/406 (49%), Positives = 259/406 (63%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q L+ + + K L + ++ +K SGLRGRGGAGF G+KWSFMP+ D Sbjct: 13 QSWRLATYEKLEGYTALRKALSGTPEQLVQLIKDSGLRGRGGAGFPAGVKWSFMPQND-D 71 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLV+NADE EPGTCKD +M +PH+LIEGC+IAS+A+ AH FIYVRGE + Sbjct: 72 KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIIASYAMRAHRCFIYVRGEALHPIRR 131 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L +AV E Y +G LG N G+D+DI VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 132 LNSAVREAYEAGYLGKNILGSGFDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 191 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLY PTTVNNVE+IA VP I+ GA W+ G E + G K++SISGHV P Sbjct: 192 FPASAGLYAAPTTVNNVETIASVPYIVNGGAEWFRKMGTEKSPGPKIYSISGHVEKPGQY 251 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + T +L+E G L PGGSS P A + +D++G E GS Sbjct: 252 EAPLGTTLRQLLEMAGGM--KDGIPLKFWTPGGSSTPLFTAEHI-DVPLDFEGAAEAGSM 308 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT AV V + + + A+ + + FYKHESCG+CTPCREGT W+ +++ER+V G + + Sbjct: 309 LGTTAVQVFNETVSVPWAVMKWTQFYKHESCGKCTPCREGTYWLTQILERMVDGRGTESD 368 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ID L ++ NI GR+ CALGD A PI IK FR E ++ Sbjct: 369 IDTLLDICDNILGRSFCALGDGATSPITSAIKYFRDEFVELCEKNR 414 >gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5] gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5] Length = 628 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 157/425 (36%), Positives = 246/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + + +S G ++ ++K+L + +I E+ S LRGRGG Sbjct: 141 FYKKQTRNVLKNCGQIDAEHIQEYISTGGYEALEKVLFNMKPEEVIQEITESNLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA Sbjct: 201 GFQTGYKWSQVARQQ-EKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG + G+ + ++ GAGA++CGE +A Sbjct: 260 SEGYIYVRAEYPLAISRLKLAIAQAEECGLLGDDILGTGFSFHLHINRGAGAFVCGEGSA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G E++ Sbjct: 320 LTASIEGNRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIINEGADWFKSIGPESSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G V + +E M T E+I GGI+G + AV GG S CL Sbjct: 380 GTKAFALTGSVKHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPH 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 439 L-DINLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++DLL E++ I +C LG +AA P+ +K FR E+ + Sbjct: 498 MLEILERIVAGNGKMEDLDLLEELANTITDTALCGLGKSAALPVVSTLKLFREEYEQHVV 557 Query: 418 QYHRC 422 + +C Sbjct: 558 E-KKC 561 >gi|15610286|ref|NP_217666.1| NADH dehydrogenase I chain F [Mycobacterium tuberculosis H37Rv] gi|15842726|ref|NP_337763.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis CDC1551] gi|31794326|ref|NP_856819.1| NADH dehydrogenase I chain F [Mycobacterium bovis AF2122/97] gi|121639033|ref|YP_979257.1| putative NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663005|ref|YP_001284528.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra] gi|148824344|ref|YP_001289098.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis F11] gi|215405148|ref|ZP_03417329.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis 02_1987] gi|215432109|ref|ZP_03430028.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis EAS054] gi|215447440|ref|ZP_03434192.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis T85] gi|218754930|ref|ZP_03533726.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis GM 1503] gi|219559196|ref|ZP_03538272.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis T17] gi|224991525|ref|YP_002646214.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str. Tokyo 172] gi|253800184|ref|YP_003033185.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 1435] gi|254233769|ref|ZP_04927094.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis C] gi|254365775|ref|ZP_04981820.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis str. Haarlem] gi|260188191|ref|ZP_05765665.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis CPHL_A] gi|260202296|ref|ZP_05769787.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T46] gi|260206489|ref|ZP_05773980.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis K85] gi|289444714|ref|ZP_06434458.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium tuberculosis T46] gi|289448830|ref|ZP_06438574.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis CPHL_A] gi|289555423|ref|ZP_06444633.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 605] gi|289571361|ref|ZP_06451588.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T17] gi|289575862|ref|ZP_06456089.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis K85] gi|289746959|ref|ZP_06506337.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis 02_1987] gi|289755269|ref|ZP_06514647.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054] gi|289759280|ref|ZP_06518658.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85] gi|289763333|ref|ZP_06522711.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis GM 1503] gi|297635793|ref|ZP_06953573.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 4207] gi|297732790|ref|ZP_06961908.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN R506] gi|306794903|ref|ZP_07433205.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu005] gi|307085896|ref|ZP_07495009.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu012] gi|313660123|ref|ZP_07817003.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN V2475] gi|54037918|sp|P65568|NUOF_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|54041669|sp|P65567|NUOF_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|1781218|emb|CAB06289.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN F) [Mycobacterium tuberculosis H37Rv] gi|13883048|gb|AAK47577.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis CDC1551] gi|31619922|emb|CAD95266.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN F) [Mycobacterium bovis AF2122/97] gi|121494681|emb|CAL73162.1| Probable NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599298|gb|EAY58402.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis C] gi|134151288|gb|EBA43333.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis str. Haarlem] gi|148507157|gb|ABQ74966.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra] gi|148722871|gb|ABR07496.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis F11] gi|224774640|dbj|BAH27446.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str. Tokyo 172] gi|253321687|gb|ACT26290.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 1435] gi|289417633|gb|EFD14873.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium tuberculosis T46] gi|289421788|gb|EFD18989.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis CPHL_A] gi|289440055|gb|EFD22548.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 605] gi|289540293|gb|EFD44871.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis K85] gi|289545115|gb|EFD48763.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T17] gi|289687487|gb|EFD54975.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis 02_1987] gi|289695856|gb|EFD63285.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054] gi|289710839|gb|EFD74855.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis GM 1503] gi|289714844|gb|EFD78856.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85] gi|308336689|gb|EFP25540.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu005] gi|308364631|gb|EFP53482.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu012] gi|326902626|gb|EGE49559.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis W-148] gi|328459921|gb|AEB05344.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN 4207] Length = 445 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 204/417 (48%), Positives = 270/417 (64%), Gaps = 11/417 (2%) Query: 16 QGKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 + +L+ + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ Sbjct: 20 ESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQG 79 Query: 73 CSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 + +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE Sbjct: 80 DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEV 139 Query: 130 IRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + L AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQ Sbjct: 140 VPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 199 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PRL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV Sbjct: 200 PRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHV 259 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ Sbjct: 260 TRPGQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGV 316 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 317 GAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETG 376 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S +I G++ CALGD AA P+ IK+FR + + C F Sbjct: 377 RGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 432 >gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521] gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521] gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 656 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 154/427 (36%), Positives = 241/427 (56%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ + + +S+ + ++ + V K L + II+E+ S LRGRGG Sbjct: 169 FYKNQTRVALEHCGHINAESIDEYIALDGYKAVTKALFDMTPSNIIDEISESSLRGRGGG 228 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWS + K ++ Y+V N DE +PG DR +M EPH +IEG +IA A GA Sbjct: 229 GFPTGIKWSQVYKQ-NEHDKYIVCNGDEGDPGAFMDRSMMEGEPHRIIEGMIIAGIATGA 287 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IYVR E+ E L+ A+++ + GLLG N G+D +I + GAGA++CGE +A Sbjct: 288 HEGYIYVRAEYPLAVERLEKAIEQAESKGLLGDNILNSGFDFNIRISKGAGAFVCGEGSA 347 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+G PT +NNVE+ VP I+ +GA+WY G ENN Sbjct: 348 LTTSIEGSRGMPRVKPPRTVEKGLFGKPTVLNNVETFCNVPPIILKGANWYKTIGTENNY 407 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-G 296 GTK F+++G+V + +E M E++ GG++ G AV GG S CL Sbjct: 408 GTKAFALTGNVKHTGLIEVPMGTPLREIVFHIGGGVKDGE--FKAVQIGGPSGGCLCVNA 465 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +D+D LK++G+ +G+ ++VM+ + +++ F ++ESCG+C PCR GT Sbjct: 466 GHLDLKLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCVPCRAGTK 525 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ +V+G I++L E+S I +C LG +A P++ +K F+ + Sbjct: 526 RMLEILTDIVEGRGTNEHINMLEELSDTISATALCGLGKSACLPVKSTLKYFKEEYTAHV 585 Query: 417 DQYHRCN 423 +C Sbjct: 586 VD-KKCP 591 >gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM 43247] gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM 43247] Length = 706 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 197/413 (47%), Positives = 265/413 (64%), Gaps = 8/413 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + + + + K L+ D II +KASGLRGRGGAGF GMKWSF+P+ Sbjct: 283 DSWTLDNYLQHNGYQGLRKALDTPPDDIIELIKASGLRGRGGAGFPVGMKWSFIPQSDDP 342 Query: 76 --RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 PHYLVVNADESEPGTCKD +M PH+L+EG +IA++AI AH AFIYVRGE Sbjct: 343 DAPPHYLVVNADESEPGTCKDMPLMLASPHSLVEGVIIAAYAIRAHHAFIYVRGEVASVI 402 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L+ AVD+ YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+ Sbjct: 403 RRLRTAVDDAYAAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 462 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLY PT VNNVESIA VP I+R G W+ G E + G L+S+SGHV P Sbjct: 463 PPFPAVAGLYASPTVVNNVESIASVPPIIRNGVDWFRSMGTEKSPGFTLYSLSGHVERPG 522 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E ++ +T EL+++ G L PGGSS P L A + +DY+G+ G Sbjct: 523 QYEAALGVTLRELLDRAGG--VRAGHQLKFWTPGGSSTPLLTAEHL-DVPLDYEGVGAAG 579 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T ++ A+ R + FY HESCG+CTPCREGT W++++++RL Sbjct: 580 SMLGTKALQIFDETTCVVGAVLRWTQFYAHESCGKCTPCREGTYWLVQLLKRLETEGGTT 639 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L +V+ +I G++ CALGD A PI +K FR + + C F+ Sbjct: 640 ADLDTLADVTNSIVGKSFCALGDGAGSPIVSSLKYFRDEYDAHLASG--CPFE 690 >gi|215413017|ref|ZP_03421718.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis 94_M4241A] gi|298526624|ref|ZP_07014033.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis 94_M4241A] gi|298496418|gb|EFI31712.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis 94_M4241A] Length = 445 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 269/416 (64%), Gaps = 11/416 (2%) Query: 17 GKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L+ + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ Sbjct: 21 SWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGD 80 Query: 74 SD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE + Sbjct: 81 TGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVV 140 Query: 131 RERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 L AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQP Sbjct: 141 PVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQP 200 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV Sbjct: 201 RLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVT 260 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ Sbjct: 261 RPGQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVG 317 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 318 AAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGR 377 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S +I G++ CALGD AA P+ IK+FR + + C F Sbjct: 378 GSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 432 >gi|302536173|ref|ZP_07288515.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C] gi|302445068|gb|EFL16884.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C] Length = 459 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 193/411 (46%), Positives = 256/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 38 ESWTLETYRRHEGYEGLRKALAMTPDEVIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 96 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+L+EG +IA +AI + AFIY+RGE + Sbjct: 97 KPHYLVVNADESEPGTCKDIPLLFANPHSLVEGMIIACYAIRSEHAFIYLRGETVPVLRR 156 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E YA+G LG + G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 157 LHEAVREAYAAGYLGKDIDGTGRNLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 216 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 217 FPAVEGLYACPTVVNNVESIASVPAILNKGKDWFKAMGTEKSPGFTLYSLSGHVAGPGQY 276 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 277 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 333 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 334 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSD 393 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ + C F Sbjct: 394 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHVT-GKGCPFD 443 >gi|302559102|ref|ZP_07311444.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus Tu4000] gi|302476720|gb|EFL39813.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus Tu4000] Length = 449 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 197/411 (47%), Positives = 255/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 29 EAWTLDVYRRHEGYEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 88 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 147 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E +G LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 148 LHEAVREAREAGFLGENVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP I+ RG W+ G E + G L+S+SGHV P Sbjct: 208 FPAVAGLYACPTVVNNVESIASVPAIMNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQY 267 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L+E G L PGGSS P + +DY+G+ GS Sbjct: 268 EAPLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 324 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q + Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMAD 384 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR EE I C F Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGRG-CPFD 434 >gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353] gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353] Length = 656 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 156/425 (36%), Positives = 242/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + + ++ G + + K+L E+ + +I + S LRGRGG Sbjct: 169 FYEKQTRLVLKNCGHIDAEHIEEYIAVGGYQSFAKVLFEQTPNDVIETILESNLRGRGGG 228 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA Sbjct: 229 GFQTGYKWKQVARQQ-EKIRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMLIAAYAVGA 287 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG + + + ++ GAGA++CGE +A Sbjct: 288 QEGYIYVRAEYPLAISRLRLAISQAEDRGLLGEHILGTDFSFHLHINRGAGAFVCGEGSA 347 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ +GA WY G EN+ Sbjct: 348 LTASIEGKRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIIEKGAKWYRSIGPENSP 407 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G V +E M + E+I GGI+G AV GG S CL Sbjct: 408 GTKAFALTGSVKNTGLIEVPMGTSLREVIYDIGGGIKGDAK-FKAVQIGGPSGGCLITPH 466 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 467 L-DVSLDFDSLKKMGAMIGSGGLVVMDDKTCMVEVARFFMNFTQNESCGKCVPCREGTKR 525 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++DLL E++ I +C LG +AA P+ ++ FR EE + Sbjct: 526 MLEILERIVAGKGTREDLDLLDELASTITDTALCGLGKSAALPVMSTLRLFRKEYEEHVV 585 Query: 418 QYHRC 422 +C Sbjct: 586 D-KKC 589 >gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] Length = 594 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 + RI N + +S+ D + + + + K L E +I E++ SGLRGRGG GF Sbjct: 112 KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 171 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A Sbjct: 172 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 230 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IY+R E+ LQ A+++ G LG + + D+ + GAGA++CGEETAL++ Sbjct: 231 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNLKFGAGAFVCGEETALIQ 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ AV GG S CL + Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 408 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 409 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR + I+ Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 527 Query: 421 RC 422 C Sbjct: 528 TC 529 >gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 638 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 159/422 (37%), Positives = 239/422 (56%), Gaps = 8/422 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q+R+ N+ + ++D+++ G + + K L E II EVK+SGLRGRGG GF T Sbjct: 148 QERVVLRNIGHIDPTDITDAIAAGGYQGLAKALGEMTPAEIIEEVKSSGLRGRGGGGFPT 207 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW K + P Y++ NADE +PG DR I+ +P +++EG IA++A+GA F Sbjct: 208 GLKWQSCAKAEGE-PKYVICNADEGDPGAYMDRSILEGDPFSVLEGMTIAAYAVGARHGF 266 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 +YVR E+ L A+ + GLLG N LG+D DI + GAGA++CGE TAL+ S Sbjct: 267 VYVRNEYPLAVVRLVGAIKQAKQYGLLGENILGLGFDFDIKISTGAGAFVCGESTALMRS 326 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK G+PR K G P+ +NNVE+ A VP I++ GA W++ G ++GTK+ Sbjct: 327 LEGKVGRPRAKYIHTVEHGYRDKPSNLNNVETFANVPMIIKNGAQWFASMGTATSKGTKV 386 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+ G+V VE M + ++ GG AV GG S C+PA M Sbjct: 387 FSLVGNVKNTGLVEVPMGASLRHIVYDVGGGTL--KKAFKAVQSGGPSGGCIPAS-MLDI 443 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ L E G+ +G+ +IVMD+ T ++ F + ESCGQCTPCREG ++++ Sbjct: 444 PVDYEKLVETGAMMGSGGMIVMDQDTCMVDVARYFLEFLQEESCGQCTPCREGIKRLLQI 503 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + + +G ++ +I+LL E+S ++ ++C LG +A P+ I+ FR E I Sbjct: 504 LTDICQGRGREGDIELLQELSATVKELSLCGLGGSAPNPVLSTIRYFRDEYESHIRD-KF 562 Query: 422 CN 423 C Sbjct: 563 CP 564 >gi|83720620|ref|YP_441619.1| NADH-quinone oxidoreductase subunit F [Burkholderia thailandensis E264] gi|167580427|ref|ZP_02373301.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis TXDOH] gi|167618536|ref|ZP_02387167.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis Bt4] gi|257139685|ref|ZP_05587947.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis E264] gi|83654445|gb|ABC38508.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis E264] Length = 436 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 266/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE +G LG + ++ HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFELHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|56478181|ref|YP_159770.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1] gi|56314224|emb|CAI08869.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1] Length = 437 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 214/418 (51%), Positives = 271/418 (64%), Gaps = 7/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I + G + L D + RG + + KI+ + + +I E+KAS LRGRGGAGF TG+K Sbjct: 7 ILAGVDGDRTWRLQDYIGRGGYSALKKIIAEKIPAETVIAELKASSLRGRGGAGFPTGLK 66 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YL N+DE EPGT KDRDI+R+ PH++IEG IA++A+G + Y+ Sbjct: 67 WSFMPRSFPG-AKYLACNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGCERGYNYI 125 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E + A+ E +GLLG + ++ HHG GAYICGEETALLES+EG Sbjct: 126 HGEIFEIYERFEEALAEAREAGLLGQKILGSDFSFELFAHHGYGAYICGEETALLESIEG 185 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G + G+ NN GTKLFSI Sbjct: 186 KKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIINMGGESFLNLGKPNNGGTKLFSI 245 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHVN P E M F EL+E G G L AVIPGGSS P LPA M MD Sbjct: 246 SGHVNRPGNYEIGMGTPFAELLEMAGGM--RGGGKLKAVIPGGSSSPVLPAAVMMDCTMD 303 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD +T ++KA+ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 304 YDSIAKAGSMLGSGAVIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRVVHR 363 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G+ ++ ++DLL V+ NI GRTICALGDAA+ P+Q IK+F E I+ +C Sbjct: 364 IENGLGRRDDLDLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGSEFEYHIEN-KKC 420 >gi|182413363|ref|YP_001818429.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] gi|177840577|gb|ACB74829.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] Length = 668 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 143/418 (34%), Positives = 242/418 (57%), Gaps = 7/418 (1%) Query: 4 DQDRI-FTNLYGLQGKSLSDSMSR-GHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 Q RI N + S+ D + + + K L E + +I E+KASGLRGRGGAGF Sbjct: 218 RQARIVLRNCGEVDPDSVEDYLRHAQGYQALRKALFELTPEKVIGELKASGLRGRGGAGF 277 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T MKW ++ Y++ N DE +PG DR ++ +PH+++EG ++A FA+GA Sbjct: 278 PTWMKWQLTRAQPAE-QRYVICNGDEGDPGAFMDRSVLESDPHSVLEGMILAGFAMGASR 336 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 + Y+R E+ + E ++ A+ + +GLLG N G+ + + GAGA++CGEETAL+ Sbjct: 337 GYFYIRAEYPKAVERVERAIAQAREAGLLGENILGSGFSFNAKIRLGAGAFVCGEETALI 396 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++G P +PP+P+ GL+G PT +NNVE++A +P IL RG +WY+G+G E ++GT Sbjct: 397 ASIEGRRGSPSPRPPYPSVRGLWGRPTAINNVETLANIPAILLRGGAWYAGYGTEKSKGT 456 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+++G V VE M T +++ + CGG+ + + AV GG S +P + Sbjct: 457 KVFAVTGKVMNAQLVEVPMGTTLRQIVYEICGGVLDDKE-IKAVQTGGPSGGVIPEKHL- 514 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + Y+ L+++GS +G+ ++VMD++ ++ F ESCG+C PCR G M+ Sbjct: 515 DTPVSYETLQQLGSIMGSGGMLVMDKNDSMVDVARFYLRFCVDESCGKCAPCRIGGYQML 574 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++++R+ +G ++ L + ++ ++C LG A P+ ++ F + I+ Sbjct: 575 QILDRISRGRGSAEDLVTLRRICTAMQKASLCGLGQTAPNPVLSTLRYFEEEYKAYIE 632 >gi|170076827|ref|YP_001733465.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] gi|22652021|gb|AAN03565.1|AF381045_2 hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] gi|169884496|gb|ACA98209.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] Length = 534 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 146/409 (35%), Positives = 247/409 (60%), Gaps = 5/409 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + ++RG + ++ ++LE ++ E+ SGLRGRGG G+ TG+KW Sbjct: 122 VLENSGKIDPERIEAYIARGGYRSLHQVLEDLTPMAVVEEITQSGLRGRGGGGYPTGLKW 181 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K+ D Y+V NADE +PG DR ++ +PH ++EG IA +A+GA+ +IY+R Sbjct: 182 ATVAKMPGD-QKYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAGYAVGANHGYIYIR 240 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L+ A+ + + GLLGS ++ I + GAGA++CGEETAL+ S+EG Sbjct: 241 AEYPLAIQRLEKAIKQAKSKGLLGSQIFNSPFNFTIDIRIGAGAFVCGEETALIASIEGG 300 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PP+PA GL+G PT +NNVE+ A + I+R GA W+S G E ++GTK+F+++ Sbjct: 301 RGTPRPRPPYPAQSGLWGHPTLINNVETYANIVPIIREGADWFSSIGTEKSKGTKVFALT 360 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +E M +++E+ GGI + +V GG S C+PA + ++Y Sbjct: 361 GKVKNNGLIEVPMGTPVRQIVEQMGGGIPDSG-TVKSVQTGGPSGGCIPADYL-DTPIEY 418 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L ++G+ +G+ +IVMD +T+++ F + ESCG+C PCR GT M ++ ++ Sbjct: 419 DSLIKLGTMMGSGGMIVMDEATNMVDVAKFYMEFCQCESCGKCIPCRAGTVQMSGLLSKM 478 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +KG A+ ++I+LL ++ ++ ++C LG +A PI ++ FR + Sbjct: 479 LKGQAEPKDIELLEQLCHMVKEASLCGLGQSAPNPILSTLRYFRAEYDA 527 >gi|319638821|ref|ZP_07993579.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102] gi|317399725|gb|EFV80388.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102] Length = 431 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 202/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + + +I+EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQSDVIDEVKASGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+ + A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALAQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ + VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421 >gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] Length = 629 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 163/430 (37%), Positives = 249/430 (57%), Gaps = 10/430 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + +S G ++ ++K L + + +I+E+ S LRGRGG Sbjct: 142 FYKKQTRIVLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGG 201 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA Sbjct: 202 GFPTGYKWSQVAGQE-EKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGA 260 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+++ GLLG + + + ++ GAGA++CGE +A Sbjct: 261 QEGYIYVRAEYPLAISRLKRAIEQAEEYGLLGDHILGTDFSFHLHINKGAGAFVCGEGSA 320 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+G PT +NNVE+ A VP I+ GA W+ G G E + Sbjct: 321 LTASIEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSP 380 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G VN+ +E M T E+I GGI+G + AV GG S CL Sbjct: 381 GTKAFALTGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPH 439 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+MG+ +G+ ++VMD ST +++ F ++ESCG+C PCREGT Sbjct: 440 L-DVNLDFDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKR 498 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V+G + ++DLL E++ I +C LG +AA P+ +K FR E + Sbjct: 499 MLEILERIVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVV 558 Query: 418 QY----HRCN 423 H CN Sbjct: 559 DKKCASHNCN 568 >gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 594 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 + RI N + +S+ D + + + + K L E +I E++ SGLRGRGG GF Sbjct: 112 KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 171 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K Y+V NADE +PG DR I+ +P+ +IEG +IA +AIGA+ A Sbjct: 172 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 230 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IY+R E+ LQ A+++ G LG + + D+ + GAGA++CGEETAL++ Sbjct: 231 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDLKFGAGAFVCGEETALIQ 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S++G++G+P+ KPP+PA G G PT VNNVE++ VP I++ G+ W+ G E + GTK Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G VN VE M T E+I + GGI+ AV GG S CL + Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 408 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L GS +G+ +I+MD ++ F ESCG+CTPCR G + Sbjct: 409 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ R+ +G ++ LL E+S I+ ++C LG + P+ +K FR + I+ Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 527 Query: 421 RC 422 C Sbjct: 528 TC 529 >gi|46200217|ref|YP_005884.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27] gi|46197845|gb|AAS82257.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27] Length = 438 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 192/426 (45%), Positives = 261/426 (61%), Gaps = 12/426 (2%) Query: 6 DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 R LY G +L + G ++ ++L EK D +I EVK SGLRGRGGAGF Sbjct: 11 PRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGF 70 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A Sbjct: 71 PTGLKWSFMPKDD-GKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATV 129 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGE+ R + L+ A+ E A G LG N + D+ VH GAGAYICGEETAL+ Sbjct: 130 GYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALM 189 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V I+ RGA W++ G E ++G Sbjct: 190 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM 249 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298 KL+ ISG V P E M TF ELI + GG + + A+IPGGSS P LP ++ Sbjct: 250 KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQAIIPGGSSTPPLPFTEEV 306 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357 M Y+ L+ GS LGT VI++ ++ A+W L+ FY HESCG+CTPCREG + Sbjct: 307 LDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGF 366 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ + ++ G ++++++ L + IEGR+ C L DAA WP++G +++F+ Sbjct: 367 MVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAR 426 Query: 418 QYHRCN 423 + Sbjct: 427 EKRPVP 432 >gi|55980058|ref|YP_143355.1| NADH-quinone oxidoreductase subunit 1 [Thermus thermophilus HB8] gi|2499313|sp|Q56222|NQO1_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 1; AltName: Full=NADH dehydrogenase I chain 1; AltName: Full=NDH-1 subunit 1 gi|90109654|pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109662|pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109670|pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109678|pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|258588588|pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588596|pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588604|pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588612|pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588620|pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588628|pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588636|pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588644|pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|296863604|pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|296863617|pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|1279866|gb|AAA97943.1| NADH dehydrogenase I, subunit NQO1 [Thermus thermophilus] gi|55771471|dbj|BAD69912.1| NADH-quinone oxidoreductase chain 1 [Thermus thermophilus HB8] Length = 438 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 192/426 (45%), Positives = 261/426 (61%), Gaps = 12/426 (2%) Query: 6 DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 R LY G +L + G ++ ++L EK D +I EVK SGLRGRGGAGF Sbjct: 11 PRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGF 70 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A Sbjct: 71 PTGLKWSFMPKDD-GKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATV 129 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGE+ R + L+ A+ E A G LG N + D+ VH GAGAYICGEETAL+ Sbjct: 130 GYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALM 189 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V I+ RGA W++ G E ++G Sbjct: 190 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM 249 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298 KL+ ISG V P E M TF ELI + GG + + A+IPGGSS P LP ++ Sbjct: 250 KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQAIIPGGSSTPPLPFTEEV 306 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357 M Y+ L+ GS LGT VI++ ++ A+W L+ FY HESCG+CTPCREG + Sbjct: 307 LDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGF 366 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ + ++ G ++++++ L + IEGR+ C L DAA WP++G +++F+ Sbjct: 367 MVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAR 426 Query: 418 QYHRCN 423 + Sbjct: 427 EKRPVP 432 >gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 597 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 169/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI G + + + + ++ + + K L E +I+EVK SGLRGRGG Sbjct: 111 FYKRQKRIALRHCGLINPEIIEEYIANDGYRALAKALTEMTPQQVIDEVKQSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KW F D Y+V NADE +PG DR I+ +PHT++E IA +AIGA Sbjct: 171 GFSTGTKWQFAANAQGDI-KYVVCNADEGDPGAFMDRSILEGDPHTVLEAMEIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+++ GLLG N + DI + G+GA++CGEETA Sbjct: 230 SEGYIYVRAEYPIAVKRLEIAIEQARNHGLLGKNILGTDFSFDIFIRLGSGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR +PPFPAN GL+ PT +NNVE+ A VP I+ +GA W+S G E ++ Sbjct: 290 LLASVEGRRGEPRPRPPFPANKGLWDKPTIINNVETYANVPEIILKGAKWFSSVGSEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G +N+ VE M T E+I CGGI AV GG S CLPA Sbjct: 350 GTKVFAVGGKINHTGLVEIPMGTTLKEVIYDICGGIPNN-KKFKAVQTGGPSGGCLPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++YD L + GS +G+ +IVMD ++ F + ESCG+C PCR GT Sbjct: 408 LLDMPIEYDTLIQAGSMMGSGGMIVMDEDNCMVDIAKFFLTFTQEESCGKCPPCRIGTKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G ++ +I+LL ++ +I+ +C LG A P+ I+ FR E I Sbjct: 468 MLEILERITNGEGEEGDIELLENLANSIKASALCGLGQTAPNPVLSTIRYFRDEYEAHIK 527 Query: 418 QYHRCN 423 +C Sbjct: 528 D-KKCP 532 >gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] Length = 584 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 151/425 (35%), Positives = 237/425 (55%), Gaps = 7/425 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 L +Q RI N + + + + + + +++++ E + +I EVK +GLRGRGGAG Sbjct: 99 LKNQVRIVLKNCGIINPEKIEQYIDKDGYKALNRVVKEMTPNEVIEEVKIAGLRGRGGAG 158 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T KW K + Y+V NADE +PG DR ++ +PH ++EG IA +AIGA Sbjct: 159 FPTWFKWDAARKSKGE-DKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGYAIGAK 217 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ E L+ A+ + LG + +D DI++ GAGA++CGEETAL Sbjct: 218 KGYIYVRAEYPLAIERLKIAIKQAREKNYLGKSIMGSSFDFDILIKTGAGAFVCGEETAL 277 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + SLEG++G PRLKPPFPA G +G PT +NNVE+ A VP IL G ++ +G E ++G Sbjct: 278 IASLEGERGMPRLKPPFPAQSGYFGKPTNINNVETYANVPWILVHGGKAFAAYGTEKSKG 337 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G + VE M +T E + GG G AV GG S C+P + Sbjct: 338 TKVFALAGKIKNGGLVEVPMGMTLRE-VIYGIGGGIKGDKEFKAVQMGGPSGGCIPRK-L 395 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + + G+ +G+ ++VMD +T ++ F ESCG+C CR GT M Sbjct: 396 LDTPVDYESINKTGAIMGSGGMVVMDENTCMVDMARFFLDFTCKESCGKCVYCRIGTKRM 455 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++++ G +ID+L E+ +++ ++C LG PI ++ F+ I Sbjct: 456 LEILKKICSGEGSTEDIDILQELCISVKDGSLCGLGQTTPNPILTTLRYFKDEYIAHIKD 515 Query: 419 YHRCN 423 H+C Sbjct: 516 -HKCP 519 >gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] Length = 624 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 234/412 (56%), Gaps = 5/412 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++ + S+ D M RG + + K+L++G DW++ +K SGLRGRGGAGF TG+KW Sbjct: 147 IMEDIGKCECDSIDDYMGRGGYLSFIKVLKEGNPDWVVKTIKDSGLRGRGGAGFPTGVKW 206 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 D ++V N DE +PG +R ++ +PH ++EG +IA++ IGA + Y+R Sbjct: 207 EITKNSKGD-RKFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIR 265 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E + A+++ GL+G N G+ DI + GAGA++CGEETALL S+EGK Sbjct: 266 AEYPVAVEMFRKAIEDAKRLGLVGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGK 325 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PP+PA VGL+G PT +NNVE+ A VP I+R GA Y G N+ GTK+FS++ Sbjct: 326 RGVPRPRPPYPAQVGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVT 385 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +E T +++ CGG+ + AV GG S CL + +DY Sbjct: 386 GPVRLTGIIEVEFGTTLRQIVYDICGGLTDDNE-FKAVQIGGPSGACLSEAFL-DLPLDY 443 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D LK G+ +G+ ++V+ + +++ F K ESCG+C PCREG R++ER Sbjct: 444 DSLKSAGAMVGSGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQSYRILERF 503 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +G +++ L ++ I+ + C LG A PI ++ FR I+ Sbjct: 504 TQGKGTYEDLENLEFLAGLIKTASACGLGQTAPNPILSTLRLFRDEYIAHIE 555 >gi|148657645|ref|YP_001277850.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1] gi|148569755|gb|ABQ91900.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1] Length = 537 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 154/424 (36%), Positives = 250/424 (58%), Gaps = 7/424 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q RI N + + + ++ G + + L E +I+ V SGLRGRGGA Sbjct: 111 FFTLQKRIVLENSGIIDPERIESYIAAGGYQALYHALHEMTPAEVIDVVTRSGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K D Y+V NADE +PG DR I+ +PH ++EG IA++A+GA Sbjct: 171 GYPTGLKWATVAKSHGD-RKYVVCNADEGDPGAFMDRSIIESDPHKVLEGMAIAAYAVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + LQ A+ + GLLG+ G+ I + GAGA++CGEETA Sbjct: 230 DQGYVYVRAEYPLAIQRLQRAIAQARRHGLLGAQIFDSGFTFRIDIRVGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A +P I+R GA W++ G E ++ Sbjct: 290 LMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPPIIRNGAEWFAAIGAETSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + + +E M +T +++E+ GG+ G + AV GG S C+PA Sbjct: 350 GTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPDG--RVKAVQTGGPSGGCIPAA- 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L+ +GS +G+ ++VMD +T+++ F K ESCG+C PCR GT Sbjct: 407 LLDTPVDYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEFCKDESCGKCIPCRAGTAQ 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++ + G A +++ L ++ ++ ++C LG +A P+ ++ FR E + Sbjct: 467 MLHMLDLIRAGQATIADLEQLEQLCVMVKETSLCGLGQSAPNPVLSTMRYFRQEYEALLA 526 Query: 418 QYHR 421 R Sbjct: 527 DRDR 530 >gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] Length = 629 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 161/425 (37%), Positives = 248/425 (58%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + +S G ++ ++K L + + +I+E+ S LRGRGG Sbjct: 142 FYKKQTRIVLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGG 201 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + ++ Y+V N DE +PG DR IM +PH +IEG +IA++A+GA Sbjct: 202 GFPTGYKWSQVAGQE-EKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGA 260 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+++ GLLG + + + ++ GAGA++CGE +A Sbjct: 261 QEGYIYVRAEYPLAISRLKRAIEQAEEYGLLGDHILGTDFSFHLHINKGAGAFVCGEGSA 320 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+G PT +NNVE+ A VP I+ GA W+ G G E + Sbjct: 321 LTASIEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSP 380 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G VN+ +E M T E+I GGI+G + AV GG S CL Sbjct: 381 GTKAFALTGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPH 439 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+MG+ +G+ ++VMD ST +++ F ++ESCG+C PCREGT Sbjct: 440 L-DVNLDFDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKR 498 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V+G + ++DLL E++ I +C LG +AA P+ +K FR E + Sbjct: 499 MLEILERIVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVV 558 Query: 418 QYHRC 422 +C Sbjct: 559 D-KKC 562 >gi|91776408|ref|YP_546164.1| NADH-quinone oxidoreductase, F subunit [Methylobacillus flagellatus KT] gi|91710395|gb|ABE50323.1| NADH dehydrogenase subunit F [Methylobacillus flagellatus KT] Length = 441 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 208/413 (50%), Positives = 265/413 (64%), Gaps = 6/413 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 + SL + G + + +++ + II++VK SGLRGRGGAGF TG+KW Sbjct: 10 LRTIGHEHPASLETYLKLGGYAQLKRLVTEKVKATEIISQVKLSGLRGRGGAGFPTGLKW 69 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ D YLV N DE EPGT KDRDI+R+ PH LIEG IA++ +GA + Y+ Sbjct: 70 SFMPRYF-DGTKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIH 128 Query: 127 GEFIRERESLQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE RE E +AA+DE A+G LG + D+ HG GAYICGEETAL+ES+EGK Sbjct: 129 GEIWREYEIFEAALDEARAAGYLGECLFDTDFSFDLYAVHGYGAYICGEETALIESIEGK 188 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G++G PT VNN ES +P I+ G + G N+ GTK+FS+S Sbjct: 189 KGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIMEHGGQAFQELGVANSGGTKIFSVS 248 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E +M F EL+ G +G L AVIPGG S LPA + GA MDY Sbjct: 249 GHVEKPGNYEVNMGTPFTELLALAGGVWKG--RQLKAVIPGGPSTAILPASAIMGATMDY 306 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DGL + GS LG ++IVMD +T ++K + RLS F+ ESCGQCTPCREGTGW+ RV++R+ Sbjct: 307 DGLSKAGSSLGAGSMIVMDETTCMVKTLKRLSYFFYEESCGQCTPCREGTGWLYRVIKRI 366 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 V G + ++DLL +VS NI GRTICALGDAAA P+ IK+FRP E I Sbjct: 367 VDGQGRMEDLDLLTDVSSNISGRTICALGDAAATPVLSFIKHFRPEFEYYIRH 419 >gi|284050504|ref|ZP_06380714.1| NADH dehydrogenase (quinone) [Arthrospira platensis str. Paraca] gi|291570291|dbj|BAI92563.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira platensis NIES-39] Length = 537 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 241/417 (57%), Gaps = 6/417 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q +I G + + + + ++ G + + ++ + + ++ E+ SGLRGRGGA Sbjct: 112 FFSRQLKIVREFSGKIDPEKIGEYIAVGGYRALHHVIYDLTPEEVVAEITKSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ Y++ NADE +PG DR ++ +PH ++EG IA +A+GA Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ LQ A+ + +LGS + +I + GAGA++CGEETA Sbjct: 231 TQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINFNIDIRVGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ G +G PR +PP+PA GL+ CPT +NNVE++ + I+R GA WY+ G E ++ Sbjct: 291 LIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNIAPIIRNGADWYNQIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M IT E++E+ GGI GG + AV GG S C+PA Q Sbjct: 351 GTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL-QVKAVQTGGPSGGCIPA-Q 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L ++GS +G+ ++VMD +T +++ F + E+CG+C PCR GT Sbjct: 409 FLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYMEFCRGETCGKCIPCRVGTVQ 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M +++ +L+ A +++ L ++ + ++C LG A P+ ++ F E Sbjct: 469 MYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTAPNPVTSTLQYFESEYLE 525 >gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 650 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 236/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++R + + + L K +I+ V SGLRGRGGA Sbjct: 138 FFRAQKRIVLRNCGVINPEEIGEYIARDGYFALADVVLNKKPQEVIDTVIKSGLRGRGGA 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + P ++V NADE +PG DR I+ +PH+++E IA + GA Sbjct: 198 GFPTGRKWELAA-AQNVTPKFVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYCTGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E L+ A+++ +GLLG ++ DI + GAGA++CGEETA Sbjct: 257 GQGYIYVRAEYPIAVERLEIAINQAKEAGLLGRGIFGTTFEFDIDLRFGAGAFVCGEETA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+S+ G++G+PR +PP+PA GL+G PT +NNVE+ A +P ILR G WY G G +++ Sbjct: 317 LLQSVMGQRGEPRPRPPYPAQEGLWGKPTLINNVETYANIPVILREGWEWYYGHGTASSK 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G+K+FS++G +N +E M T + GG G AV GG S C+P Sbjct: 377 GSKVFSLAGKINNTGLIEVPMGTTLKTI-IFDIGGGITGGKKFKAVQTGGPSGGCIPEKY 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ LKE+GS +G+ +IVM ++ F + ESCG+CTPCR GT Sbjct: 436 L-DLPVDYESLKEIGSIMGSGGMIVMSEDDCMVDIARFYLEFTQDESCGRCTPCRVGTKR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ + G + ++DLL E++ +I ++C LG A P+ +++FR + Sbjct: 495 LLEILRIITGGKGEMEDLDLLEELAGDIRDASLCGLGQTAPNPVLSTLRHFRKEYIAHVM 554 Query: 418 QYHRCN 423 C Sbjct: 555 D-KTCP 559 >gi|167836054|ref|ZP_02462937.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis MSMB43] Length = 436 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 265/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WRLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE +G LG + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGDKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGG--VRGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|298370378|ref|ZP_06981694.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281838|gb|EFI23327.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 431 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + +IL + + +I++VK SGLRGRGGAGF TG+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYSALRRILSENISQTDVIDQVKTSGLRGRGGAGFPTGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE Sbjct: 79 PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+ + A+G LG N ++ ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALAQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GLYG PTT+NN E+ A VP I+R G ++ G N GTKLF ISGHV P Sbjct: 198 PPFPASFGLYGKPTTINNTETFASVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F E+++ G G L AVIPGGSS P LPA M MDYD + + G Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ A+IVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V+G + Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++DLL V + GRTICAL DAA +P++ K+FR I+ Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFREEFVHYIEH 421 >gi|319794663|ref|YP_004156303.1| NADH-quinone oxidoreductase, f subunit [Variovorax paradoxus EPS] gi|315597126|gb|ADU38192.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus EPS] Length = 446 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 219/418 (52%), Positives = 279/418 (66%), Gaps = 7/418 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 + +I+ L G L+D +RG + + KIL +G D +I EVKASGLRGRGGAGF T Sbjct: 25 EPQIYAGLNGTN-WRLADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N+DE EPGTCKDRDI++ PH +IEG IA++A+G + Sbjct: 84 GLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE + + + A++E A+G LG Y+ + HG GAYICGEETALLES Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLGDKIMGSTYNFQLHAAHGFGAYICGEETALLES 202 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G Y G+ NN GTK+ Sbjct: 203 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGPAYLECGKPNNGGTKI 262 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 +S+SG V P E M F +L+E CGG+R G L AVIPGGSS P LPA M Sbjct: 263 YSVSGDVELPGNYEVPMGTPFSKLLE-LCGGVRKG-RTLKAVIPGGSSSPVLPADIMMAC 320 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ RV Sbjct: 321 TMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLKRLSYFYMHESCGQCTPCREGTGWLYRV 380 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++R+ G + ++DLL V+ NI+GRTICALGDAAA P++ +IK+FR E I Y Sbjct: 381 VDRIHNGQGRATDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438 >gi|237811587|ref|YP_002896038.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei MSHR346] gi|237505537|gb|ACQ97855.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei MSHR346] Length = 436 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 265/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + YV Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYV 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE +G LG + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|254821139|ref|ZP_05226140.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium intracellulare ATCC 13950] Length = 446 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 203/414 (49%), Positives = 269/414 (64%), Gaps = 8/414 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L G ++ + K L D +I VK SGLRGRGGAGFSTG KWSF+P+ + Sbjct: 25 ESWTLETYRRHGGYEAMKKALAMEPDAVIGVVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 84 Query: 76 ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 +PHYLVVNADESEPGTCKD +M PH L+EG +IA++AI A+ AFIYVRGE + Sbjct: 85 AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRANHAFIYVRGEVLPV 144 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQ AV E YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 145 LRRLQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 204 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 205 RPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRP 264 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ Sbjct: 265 GQYEAPLGITLRELL-AYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGGA 321 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 322 GSMLGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDKIYERLEAGTGT 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L ++S +I G+ CALGD AA P+ I+ FR + + C F Sbjct: 382 HEDLDKLLDISDSILGKAFCALGDGAASPVMSSIQYFRDEYVAHV-EGGGCPFD 434 >gi|300691030|ref|YP_003752025.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] gi|299078090|emb|CBJ50733.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] Length = 431 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + II +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N+DE EPGT KDRDI+R+ PH LIEG I +A+G + Sbjct: 69 GLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRYNPHALIEGMAIGGYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE + + A++E A+GLLG N G++ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWDVYKRFEEALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN G+K+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + F +L+E G G + AVIPGGSS P +P M Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKIKAVIPGGSSAPVVPGDVMMQT 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYDG+ + GS LG+ AVIVMD + ++K++ RLS FY ESCGQCTPCREGTGW+ RV Sbjct: 306 DMDYDGIAKTGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ + Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|226355364|ref|YP_002785104.1| NADH dehydrogenase (quinone) subunit F [Deinococcus deserti VCD115] gi|226317354|gb|ACO45350.1| putative NADH dehydrogenase (quinone), subunit F (NADH-quinone oxidoreductase, subunit F) [Deinococcus deserti VCD115] Length = 446 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 197/419 (47%), Positives = 263/419 (62%), Gaps = 11/419 (2%) Query: 3 TDQDRIFTNLYGL----QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 R LY +L+ G ++ V + E G D +I+EVK SGLRGRGGA Sbjct: 14 AKDPRFAPTLYAHVGQPDSWTLAYYRDNGGYEAVRRAFEMGPDAVIDEVKKSGLRGRGGA 73 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF+TG+KWSFMP R HY++ NADESEPG+ KDR ++ +PH LIEG +IA +A+ A Sbjct: 74 GFATGLKWSFMPLND-GRKHYVICNADESEPGSFKDRYLLSEDPHQLIEGMLIAGYAMRA 132 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IY+RGE++ E + A+ E A+GLLG N G+D D+ VH GAGAYICGEETA Sbjct: 133 TVGYIYIRGEYVHAAERVWQAIHEARAAGLLGRNVLGSGFDFDLQVHRGAGAYICGEETA 192 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG + PRLKPPFPA GLYG PTT+NNVE+ IL+ G+ W++G G E ++ Sbjct: 193 LMNSLEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATQILKFGSEWHAGMGTERSK 252 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-G 296 G KLF ISG V P E + TF ELI GG + + A+IPGGSS P LP Sbjct: 253 GMKLFQISGPVARPGVYELPLGTTFRELIYDWAGGP---LEEMKAIIPGGSSCPMLPWSD 309 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-T 355 ++ MDY+ + GS LGT V ++ R+ I+ A W L FY HESCG+CTPCREG + Sbjct: 310 RILDTPMDYEAIAAAGSMLGTGGVTLIPRADCIVNATWNLVRFYAHESCGKCTPCREGIS 369 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 GWM+++ E+LV+G Q ++ L+ ++S+NI GR+ CAL DA P+ I FR ++ Sbjct: 370 GWMVKMYEKLVRGHGQPGDVQLILDMSENIGGRSFCALADACLGPVLSSISLFRDEYDQ 428 >gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii DSM 519] gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii] Length = 625 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 248/426 (58%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + +S+ ++ ++ + + + EK +I+E+K SGLRGRGG Sbjct: 139 FYKKQKRIALRNCGLINPELISEYIACRGYEAIGRCITEKTPQDVIDEIKLSGLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG+KW F K SD Y+V NADE +PG DR I+ +PH++IE +A +++GA Sbjct: 199 GFSTGLKWEFTKKPVSDI-KYIVCNADEGDPGAFMDRSILEGDPHSIIEAMAVAGYSVGA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F+Y+R E+ + L+ A++E GLLG N + DI + +GAGA++CGEETA Sbjct: 258 SKGFVYIRAEYPLAIKRLRHAINEAREHGLLGDNIMGTSFSFDIEIKYGAGAFVCGEETA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA GL+G PT VNNVE++A VP IL GASW++ G E ++ Sbjct: 318 LIHSIEGQRGEPTTKPPFPAESGLWGKPTCVNNVETLANVPAILLEGASWFNAIGSETSK 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M IT E+I + GGI+ G + AV GG S C+ Q Sbjct: 378 GTKVFALAGKINNVGLVEVPMGITLREIIYEIGGGIKDGKE-FKAVQTGGPSGGCITKDQ 436 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 437 L-DVKIDYESLGAIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVEESCGKCTPCRVGNKR 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ ++ +G ++D + E+++ I+ ++C LG A P+ + F + Sbjct: 496 LHEMLTKISEGKGTMEDLDAMKELAQTIKDTSLCGLGQTAPNPVLSTLNFFGDEYRAHV- 554 Query: 418 QYHRCN 423 Q C Sbjct: 555 QDKICP 560 >gi|317051066|ref|YP_004112182.1| NADH-quinone oxidoreductase subunit F [Desulfurispirillum indicum S5] gi|316946150|gb|ADU65626.1| NADH-quinone oxidoreductase, F subunit [Desulfurispirillum indicum S5] Length = 428 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 217/423 (51%), Positives = 282/423 (66%), Gaps = 5/423 (1%) Query: 4 DQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 + ++ + YG+ +L + G + +DK D I+ EVK SGLRGRGGAGF Sbjct: 7 KEVKVLSAKYGIANSFTLDVARQHGGYAQIDKAFSMSPDQIVEEVKQSGLRGRGGAGFPA 66 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKWSF+PK +D+P YL VN+DESEPGT KDR I+ +PH LIEG +I +AI +H A+ Sbjct: 67 GMKWSFLPK-ETDKPIYLAVNSDESEPGTFKDRQILEKDPHMLIEGIIITCYAIKSHDAY 125 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE++R+ E LQ A+DE YA+GLLG N+ GY VD+ VH GAGAYICGEE ALLES Sbjct: 126 IYIRGEYVRQAEGLQRAIDEAYAAGLLGENACGKGYRVDVTVHRGAGAYICGEEMALLES 185 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGKKGQPR+KPPFPA VGLYG PT +NNV++IA VP I+ GA+ Y FG E + GT L Sbjct: 186 IEGKKGQPRVKPPFPALVGLYGAPTIINNVQTIASVPYIIEHGAAGYRQFGTEKSPGTFL 245 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ISGHV P E + ++ E I+K GGI G L AVIPGGSS P L A + Sbjct: 246 FGISGHVEKPGVYETELGVSMKEFIDKMAGGIWKGRK-LKAVIPGGSSCPVLNAEDVEKC 304 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ L E GS LG+ +IV D T +++ + L FY+HESCGQCTPCREGTGW+ ++ Sbjct: 305 TLDYESLVENGSMLGSGGMIVSDDQTCMVRNLKNLLYFYQHESCGQCTPCREGTGWIYKI 364 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + + G + ++DLL E+ N+EG+T+C L AAA P + I FR EE I + + Sbjct: 365 VSDIEDGKGKMEDLDLLLEICDNMEGKTVCVLSGAAAMPCRSHILKFRQEFEEHI-KLGK 423 Query: 422 CNF 424 C F Sbjct: 424 CPF 426 >gi|313673509|ref|YP_004051620.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] gi|312940265|gb|ADR19457.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] Length = 536 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 153/423 (36%), Positives = 245/423 (57%), Gaps = 6/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 Q + N + +S+ + + + K L E D +INEV SGLRGRGG G+ Sbjct: 107 KQQKIVLKNCGKIDPESIEEYILNEGYKAFLKCLNELSPDEVINEVIKSGLRGRGGGGYP 166 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWS + K+ S Y+V NADE +PG DR I+ +PH +IEG +IA++A+GA+ Sbjct: 167 TGLKWSTVGKIQSPI-KYVVCNADEGDPGAFMDRAILESDPHKVIEGMLIAAYAVGANRG 225 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVR E+ + L+ A+ LLG+N ++ ++ V GAGAY+CGEETAL+ Sbjct: 226 YVYVRAEYPLAIKRLKTAIKNAERFNLLGANIAGTTFNFNLEVRLGAGAYVCGEETALIA 285 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGKKG PR +PP+PA G+ PT +NNVE+ A + TI+ G+ W++ G + ++GTK Sbjct: 286 SIEGKKGTPRPRPPYPAESGIKNYPTLINNVETYANISTIINNGSEWFASIGTDKSKGTK 345 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F++SG++ VE M I +LI + GGI + AV GG S C+P+ + Sbjct: 346 VFALSGNIKNTGLVEVPMGIKLYDLIFEIGGGIPNDKE-FKAVQTGGPSGGCIPSEYL-N 403 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L +GS +G+ +IVMD +T ++ F K ESCG+C PCR GT + Sbjct: 404 TSVDYESLTHLGSIMGSGGMIVMDENTCMVDMAKFFIDFCKSESCGKCAPCRNGTVQLYE 463 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++++ KG +R++ + +++ ++ ++C LG +A P+ K F+ E + + Sbjct: 464 ILDKITKGEGNERDLITMIKIANTMKKTSLCGLGQSAPNPVLSAFKYFKDEFYEHVLHRY 523 Query: 421 RCN 423 C Sbjct: 524 -CP 525 >gi|309791453|ref|ZP_07685958.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6] gi|308226489|gb|EFO80212.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6] Length = 529 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 157/421 (37%), Positives = 253/421 (60%), Gaps = 6/421 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q + N + + + + ++ G + ++ + + E +I+E+ SGLRGRGGA Sbjct: 112 FFTRQFPIVRKNAGKIDPERIEEYIAAGGYRSLYRAINEMTPAEVIDEITRSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K + Y+V N DE +PG DR ++ +PH ++EG IA++AIGA Sbjct: 172 GYPTGLKWSTVAKSRGE-RKYVVCNGDEGDPGAFMDRSVLESDPHLVLEGMCIAAYAIGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVRGE+ + LQ A+++ GLLGS +D + + GAGA++CGEETA Sbjct: 231 DQGYIYVRGEYPFAIQRLQKAINQAKKFGLLGSQIFDSTFDFRVDIRVGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++GQPR +PP+PA GL+G PT +NNVE+ A + +I+ G WY+ G E +R Sbjct: 291 LLASIEGRRGQPRPRPPYPAESGLWGKPTLINNVETFANIASIIEHGPDWYASIGTETSR 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G ++ +E M IT E++ + GG G + + AV GG S C+PA Sbjct: 351 GTKVFALTGKIHNTGLIEVPMGITLREIVHQLGGGGHSGSE-VKAVQTGGPSGGCIPAS- 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L ++GS +G+ ++VMD ST++++ F K ESCG+C PCR GT Sbjct: 409 LFDTPVDYESLAQVGSIMGSGGMVVMDNSTNMVELAKFYMEFCKDESCGKCVPCRVGTVQ 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R++E++ G + +ID L E+ + + ++C LG +A P+ +K F E I+ Sbjct: 469 IHRLLEKITAGQGSQADIDQLQELCQLLRNTSLCGLGQSAPNPVMSTLKYFTEEYEHLIE 528 Query: 418 Q 418 + Sbjct: 529 R 529 >gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] Length = 590 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 242/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q RI + + +SL ++ + ++K ++ + EVK SGLRGRGG Sbjct: 106 FVDAQRRIVMSGCGQIDAESLDAYLATDGFKAIEKCIKTMKPAEVTEEVKKSGLRGRGGG 165 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSF Y++ NADE +PG DR I+ +P+ LIEG +IA +AIGA Sbjct: 166 GFPTGLKWSFCA-ASPGHHKYIICNADEGDPGAFMDRSILEGDPYCLIEGMMIAGYAIGA 224 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + LQ A+D CY G LG N LG++ D+ + GAGA++CGEETA Sbjct: 225 QFGYVYVRAEYPLAIDRLQKAIDVCYEKGYLGKNCMGLGFEYDMRIKKGAGAFVCGEETA 284 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+ P+ +NNVE+ A V I+ GA WY+ G E + Sbjct: 285 LMASIEGERGMPRPRPPFPAVKGLWQHPSNINNVETFANVRHIINNGAEWYAAIGTETTK 344 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + VE + E+I CGGI AV GG S C+PA Sbjct: 345 GTKIFAVTGKVKHTGLVEVPAGMKVREVIYDVCGGILNNRK-FKAVQAGGPSGGCIPAE- 402 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VMD +T ++ F + ESCG+C PCR G Sbjct: 403 ILDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVSKFFLTFTRMESCGKCVPCRIGLKA 462 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G ++ +++ L ++ I+ ++C LG A P+ I+ FR E I Sbjct: 463 MLDILIRITEGNGREGDLETLIDLGTTIKQASLCGLGQTAPNPVLSTIRYFRDEYEAHIT 522 Query: 418 QYHRCN 423 RC Sbjct: 523 D-KRCP 527 >gi|209525022|ref|ZP_03273566.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328] gi|209494431|gb|EDZ94742.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328] Length = 537 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 240/417 (57%), Gaps = 6/417 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q +I G + + + + ++ G + + + + + ++ E+ SGLRGRGGA Sbjct: 112 FFSRQLKIVREFSGKIDPEKIGEYIAVGGYRALHHAIYDLTPEEVVTEITKSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ Y++ NADE +PG DR ++ +PH ++EG IA +A+GA Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ LQ A+ + +LGS D +I + GAGA++CGEETA Sbjct: 231 TQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSIDFNIDIRVGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ G +G PR +PP+PA GL+ CPT +NNVE++ + I+R GA WY+ G E ++ Sbjct: 291 LIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNIAPIIRNGADWYNQIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M IT E++E+ GGI GG + AV GG S C+PA Sbjct: 351 GTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL-QVKAVQTGGPSGGCIPADF 409 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ ++VMD +T +++ F + E+CG+C PCR GT Sbjct: 410 L-DTPVDYESLTRLGSMMGSGGMVVMDENTSMVQVAQFYMEFCRGETCGKCIPCRVGTVQ 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M +++ +L+ A +++ L ++ ++ ++C LG A P+ ++ F E Sbjct: 469 MYQLLTKLLNKQATSADLEKLKQLCDMVKATSLCGLGMTAPNPVTSTLQYFESEYLE 525 >gi|116619257|ref|YP_821413.1| NADH-quinone oxidoreductase subunit F [Candidatus Solibacter usitatus Ellin6076] gi|116222419|gb|ABJ81128.1| NADH-quinone oxidoreductase, F subunit [Candidatus Solibacter usitatus Ellin6076] Length = 437 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 190/423 (44%), Positives = 265/423 (62%), Gaps = 5/423 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + R+ T +G ++ ++ + K + + II EVK S LRGRGGAGF TG Sbjct: 10 ETRVLTRRFGKPNSAAIEGYLADDGYQGFLKAAKMKPEEIIEEVKVSNLRGRGGAGFPTG 69 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+P+ S +P Y+VVN DESEPGTCKDR ++ ++PH LIEG +IA ++ AH ++ Sbjct: 70 MKWSFVPRT-SPKPKYIVVNGDESEPGTCKDRVLIENDPHQLIEGVLIAGLSVDAHAGYV 128 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE+ + ++ A+ E YA G LG N G+D D+ H GAGAY CGEE+ALLESL Sbjct: 129 YIRGEYRYLIDIMEKAIAEAYAKGWLGKNIQGTGFDFDLYAHTGAGAYECGEESALLESL 188 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR++PPFPA G + CPT +NNVE+ VP ILR G + ++ G GTK+ Sbjct: 189 EGKRGIPRIRPPFPAVAGAFQCPTILNNVETFCAVPAILRDGGAAFAALGIPKAGGTKMT 248 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ++GHVN P E + ++IE+ GG+R L A IPGGSS P L A ++ GA Sbjct: 249 CLTGHVNKPGVYELKLGFPVKQMIEEVGGGMR-NGKKLKAFIPGGSSCPVLTAAELEGAT 307 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + S LG+ VI+MD T ++KA R+ FY HESCG C PCREGT W+ +++ Sbjct: 308 MDYDSMASRKSMLGSGGVIIMDEDTCMVKAALRIMRFYAHESCGWCIPCREGTTWLKKIL 367 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R G + +I+L+ +++KN+ GRT C LGDAAA P +++ FR E+ + C Sbjct: 368 TRFHDGQGTRTDINLIGDIAKNMLGRTFCPLGDAAAMPTISIVEKFREEFEDHLA-GKPC 426 Query: 423 NFQ 425 F+ Sbjct: 427 RFE 429 >gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus torques L2-14] Length = 622 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 158/425 (37%), Positives = 241/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + D+M+ G +++ +K E + +I V +GLRGRGGA Sbjct: 136 FYAKQTRLVLRNCGHIDAEHIEDAMAVGAYESFEKAVFEMTPEAVIKTVTDAGLRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + ++ Y+V N DE +PG DR +M +PH +IEG ++A++A+ A Sbjct: 196 GFPAGRKWSQVASQP-EKIRYVVCNGDEGDPGAFMDRSVMEGDPHRMIEGMMLAAYAVQA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ LQ A+ + GLLG N G+ + ++ GAGA++CGE +A Sbjct: 255 QEGYIYVRAEYPLAVRRLQIAIAQAEEKGLLGDNILGTGFSFKLHINRGAGAFVCGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A +P I++ GA WYS G + Sbjct: 315 LTASIEGKRGMPRVKPPRTVEQGLWEKPTVLNNVETYANIPMIIKNGADWYSRIGTPQSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G+V +E M I+ E+I GGI+ AV GG S CL Q Sbjct: 375 GTKAFALTGNVKNTGLIEVPMGISLREIIFDIGGGIKDD-KGFKAVQIGGPSGGCLVESQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + MD+D L ++G+ +G+ ++VMD T +++ F + ESCG+C PCREGT Sbjct: 434 L-DSKMDFDSLSKIGAMIGSGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++D L E++ IE +C LG +A P+ I FR EE I Sbjct: 493 MLEILERIVAGNGEMSDLDELEELADMIENTALCGLGKSAPKPVVSTIHAFRKEYEEHII 552 Query: 418 QYHRC 422 +C Sbjct: 553 D-KKC 556 >gi|53718852|ref|YP_107838.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243] gi|76811124|ref|YP_332849.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710b] gi|126454273|ref|YP_001065582.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106a] gi|167737857|ref|ZP_02410631.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 14] gi|167815041|ref|ZP_02446721.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 91] gi|167823457|ref|ZP_02454928.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 9] gi|167845009|ref|ZP_02470517.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei B7210] gi|167893550|ref|ZP_02480952.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 7894] gi|167901996|ref|ZP_02489201.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei NCTC 13177] gi|167910232|ref|ZP_02497323.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 112] gi|217419390|ref|ZP_03450896.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 576] gi|226195331|ref|ZP_03790920.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pakistan 9] gi|242317334|ref|ZP_04816350.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106b] gi|254181182|ref|ZP_04887779.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1655] gi|254190545|ref|ZP_04897052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195194|ref|ZP_04901623.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei S13] gi|254260557|ref|ZP_04951611.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710a] gi|52209266|emb|CAH35211.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243] gi|76580577|gb|ABA50052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710b] gi|126227915|gb|ABN91455.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106a] gi|157938220|gb|EDO93890.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pasteur 52237] gi|169651942|gb|EDS84635.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei S13] gi|184211720|gb|EDU08763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1655] gi|217396694|gb|EEC36710.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 576] gi|225932533|gb|EEH28531.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei Pakistan 9] gi|242140573|gb|EES26975.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1106b] gi|254219246|gb|EET08630.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 1710a] Length = 436 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 265/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE +G LG + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM 7454] gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM 7454] Length = 526 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 147/426 (34%), Positives = 235/426 (55%), Gaps = 6/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R + N + ++ + +S+ + ++K + + R II+ +K SGLRGRGGA Sbjct: 40 FYQNQTRLVLKNCGIIDPNNIDEYISQDGYFALNKAIFDLDRKEIIDIIKDSGLRGRGGA 99 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW K +D Y++ NADE +PG DR ++ +PH+++E I + AIG+ Sbjct: 100 GFPTGRKWEAAFKQDTDI-KYIICNADEGDPGAFMDRSVLEFDPHSVLEAMAICARAIGS 158 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + +SLQ A+ + LLG N + DI + GAGA++CGE TA Sbjct: 159 KQGYIYVRAEYPKAVKSLQNAIKQAREYNLLGENIMGSDFSFDIDLRLGAGAFVCGEGTA 218 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G PR K GL+G PT +NNVE+ A + I+ +G+SW+ FG E + Sbjct: 219 LMESIEGKRGMPRNKEFRTTVKGLWGKPTVINNVETFANIAQIINKGSSWFRSFGTEKSP 278 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M + ++++ GI+ AV GG S C+P Sbjct: 279 GTKVFALVGKVKESGLVEVEMGTSINKIVYDIGLGIQNDKKA-KAVQTGGPSGGCIPTK- 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + D++ LKE+GS +G+ ++VMD ++ F ESCG+CTPCR G Sbjct: 337 LFDTACDFESLKEIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++ L KG A + ++ L E+SK + ++C LG ++ PI + F+ + + Sbjct: 397 LFEMLDDLTKGKANEETLEKLEELSKIVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVG 456 Query: 418 QYHRCN 423 + C Sbjct: 457 ENKTCP 462 >gi|288941582|ref|YP_003443822.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180] gi|288896954|gb|ADC62790.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180] Length = 538 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 149/419 (35%), Positives = 238/419 (56%), Gaps = 6/419 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI G + SL ++ G + + + L E ++ EV SGLRGRGG Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K+ Y+V NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 179 GYPTGLKWSTIAKMPPG-QKYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ E L+ A+ + +G LG + + ++ + GAGA++CGEETA Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEIRLGAGAFVCGEETA 297 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +GQPR +PP+PA GL+GCPT +NNVE+ A + I+R G W++ G E ++ Sbjct: 298 LMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEGSK 357 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M + ++IE GGI AV GG S C+P Sbjct: 358 GTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIP-DGRAFKAVQTGGPSGGCIPEAH 416 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK +G+ +G+ +IVMD ++ ++ F ESCG+C PCR GT Sbjct: 417 L-DIPVDYDSLKTLGTIMGSGGLIVMDETSCMVDVARFFMEFCMSESCGKCIPCRAGTWQ 475 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M +++ L KG + ++ LL ++ + ++C LG A P+ ++ FR E ++ Sbjct: 476 MHALLDTLTKGRGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAKL 534 >gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] Length = 596 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 155/428 (36%), Positives = 241/428 (56%), Gaps = 9/428 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q RI N + +++ + ++R + + K+L D ++ E+ SGLRGRGG G Sbjct: 111 FYKPQLRIALRNCGFIDPENIGEYIARDGYAALAKVLGMQPDHVLQEIIDSGLRGRGGGG 170 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW +D Y+V NADE +PG DR I+ +PH+++E I + GA Sbjct: 171 FPTGLKWKITRDAKAD-RKYVVCNADEGDPGAFMDRSILEGDPHSILEAMAINGYCTGAS 229 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 IY+R E+ E L+ A+++ GLLG++ G+ DI + +GAGA++CGEETAL Sbjct: 230 HGLIYIRAEYPLAIERLRRAIEQAREYGLLGNDILGSGFSFDIELRYGAGAFVCGEETAL 289 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG++G+P +KPP+P+ G G PT VNNVE+ A +P IL RGA W+S G E ++G Sbjct: 290 IHSMEGRRGEPTVKPPYPSESGYKGYPTNVNNVETYANIPPILLRGAEWFSSIGTEKSKG 349 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F+++G VN +E M T E+I + GGI+ AV GG S CL + Sbjct: 350 TKVFALAGKVNNVGLIEVPMGTTLREVIFEIGGGIK-NGKKFKAVQTGGPSGGCLTEKHL 408 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L GS +G+ +IVMD ++ F ESCG+CTPCR G + Sbjct: 409 -DTPIDYDNLLASGSMMGSGGMIVMDEDDCMVSVAKFYLEFTVDESCGKCTPCRIGNKRL 467 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +++R+ +G+ + ++D L +++ I ++CALG A P+ ++NF + Sbjct: 468 LEILDRITRGLGRDEDLDELQNLARVIRDSSLCALGQTAPNPVLSTLENFWDEYVAHVRD 527 Query: 419 Y----HRC 422 + HRC Sbjct: 528 HHCTAHRC 535 >gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] Length = 626 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 238/426 (55%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + +QD I + + S+ D ++RG ++++ K L + II VKASGLRGRGG Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D ++V N DE +PG +R ++ +PH ++EG +IA +A+GA Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ + + A+++ GLLG N G+ D+ V GAGA++CGEETA Sbjct: 260 QKGYAYIRAEYPFAVKMFKKAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR KPPFPA GL+G PT +NNVE+ A +P ILR G Y G EN+ Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T ++I CGG + AV GG S CL Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK+ + +G+ ++V+ + T +++ F K ESCG+C PCREGT Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ G A ++ L +SK I+ ++C LG A PI +K FR I+ Sbjct: 498 AYNILEKFTHGKATYEDLKALEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557 Query: 418 QYHRCN 423 C Sbjct: 558 --GECP 561 >gi|116329149|ref|YP_798869.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330243|ref|YP_799961.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121893|gb|ABJ79936.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123932|gb|ABJ75203.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 444 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 196/411 (47%), Positives = 266/411 (64%), Gaps = 6/411 (1%) Query: 13 YGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 Y +S L S ++ + K L D II EVK SGLRGRGGAGF TG+KWSF+P Sbjct: 10 YIDNPQSAKLEFYESVHGYEGLKKALSMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIP 69 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K S +P Y++ NADE EPGT KDR ++ + PH +IEG +I + AIG++ F Y+RGEF Sbjct: 70 KDVS-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGAKAIGSNKGFFYIRGEFQ 128 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + ++QAA+DE Y+ G LG N +D D+I++ GAGAYICGEETAL+ SLEG++G P Sbjct: 129 KGARTMQAAIDEAYSKGYLGKNILGTDFDFDLILYEGAGAYICGEETALINSLEGRRGHP 188 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPA GLY PT VNNVE+ + +P IL +GA WYS G E + GT+LFS+SGHV Sbjct: 189 RLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVK 248 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + EL+ CGGI L A+IPGGSSVP L A + + A MD++ + Sbjct: 249 RPGVYEIELGTPLLELVNDLCGGIVDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMA 307 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + LG+ AVIV+ DI++ +R + FY HESCGQCTPCREGT W+ ++ ++ +G Sbjct: 308 AHKTMLGSGAVIVLAEGADIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGE 367 Query: 370 AQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++IDL+ +S+N+E G TIC L DA ++ I+ FR + R+ + Sbjct: 368 GTTQDIDLILSLSRNMEGGTTICPLSDACVGAVRPAIQKFRSEFDARLKEK 418 >gi|332968230|gb|EGK07307.1| NADH-quinone oxidoreductase subunit F [Kingella kingae ATCC 23330] Length = 433 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 205/406 (50%), Positives = 259/406 (63%), Gaps = 6/406 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L+ +RG + + KIL + + II+E+KASGLRGRGGAGF TG+KWSFMP+ Sbjct: 21 WTLAAYQARGGYQALRKILTEKIAQTDIIDEIKASGLRGRGGAGFPTGLKWSFMPRSFPG 80 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V N DE EPGT KDRDI+ PH LIEG +IA +A+GA + Y+ GE + Sbjct: 81 -AKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYNYIHGEIFEGFQL 139 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ E +G LG N + ++ HHG GAYICGEETALLESLEGKKGQPR KPP Sbjct: 140 FEKALQEARDAGFLGKNIMGSEFSFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA+ GLYG PTT+NN E+ A VP I+R G ++ G E+ GTKLFSISGHV P Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLFSISGHVERPGNY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E ++ F EL+ G G L AVIPGGSS P LPA M MDYD + + GS Sbjct: 260 EVALGTPFSELLAMAGG--VRGGKKLKAVIPGGSSAPVLPADIMMSCNMDYDSIAKAGSM 317 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AVIVMD ++KA+ RL+ FY ESCGQCTPCREGTGW+ RV+ R+ G + + Sbjct: 318 LGSGAVIVMDEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRVVHRIATGKGRPDD 377 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++LL V N+ GRTICAL DAA +P++ K+FR E I Sbjct: 378 LELLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIKHGK 423 >gi|72163089|ref|YP_290746.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX] gi|71916821|gb|AAZ56723.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX] Length = 438 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 193/400 (48%), Positives = 249/400 (62%), Gaps = 5/400 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L G ++ + K L D I+ VKASGLRGRGGAGF TGMKW F+PK + Sbjct: 16 DSYTLDAYRENGGYEALRKALTMEPDAIVEMVKASGLRGRGGAGFPTGMKWGFLPKD-NP 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +P YLVVNADESEPGTCKD +M PH LIEG +I+++AI +H AFIYVRGE + Sbjct: 75 KPRYLVVNADESEPGTCKDIPLMMANPHALIEGVIISAYAINSHQAFIYVRGEVLHVIRR 134 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ AV E Y +GLLG + G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPP Sbjct: 135 LRHAVAEAYEAGLLGKDILGSGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVESIA VP+I+ GA W+ G E + G FS+SGHV P Sbjct: 195 FPAVAGLYASPTVVNNVESIATVPSIVANGAEWFKSMGTEKSAGFGFFSLSGHVKRPGQY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + +T EL+E G L PGGSS P + +D++ + GS Sbjct: 255 EAPLGVTLRELLEMAGG--IRDGHRLKFWTPGGSSTPIFTEEHI-DIPLDFESVGGAGSM 311 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++ + FY HESCG+CTPCREG WM++V+ R+ G + + Sbjct: 312 LGTRALQIFDETTSVVRVVRGWIEFYAHESCGKCTPCREGNYWMVQVLRRIEAGKGTQED 371 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ID L ++ N+ GR+ CALGD A + IK FR Sbjct: 372 IDTLLDICDNLLGRSFCALGDGATSSVTSAIKYFREEFIA 411 >gi|24213590|ref|NP_711071.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans serovar Lai str. 56601] gi|24194382|gb|AAN48089.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans serovar Lai str. 56601] Length = 443 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 196/409 (47%), Positives = 268/409 (65%), Gaps = 6/409 (1%) Query: 13 YGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 Y +S L S +D + K L+ D II EVK SGLRGRGGAGF TG+KWSF+P Sbjct: 10 YIDNPQSTKLEFYESVHGYDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIP 69 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K +P Y++ NADE EPGT KDR ++ + PH +IEG +I + AIG++ F Y+RGEF Sbjct: 70 KDIP-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQ 128 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + +++QAA+DE Y+ G LG N G+D D+I++ GAGAYICGEETAL+ SLEG++G P Sbjct: 129 KGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHP 188 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPA GLY PT VNNVE+ + +P IL +GA WYS G E + GT+LFS+SGHV Sbjct: 189 RLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVK 248 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + EL+ CGGI L A+IPGGSSVP L A + + A MD++ + Sbjct: 249 KPGVYEIELGTPLLELVNDLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMA 307 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + LG+ AVIV+ TDI++ +R + FY HESCGQCTPCREGT W+ ++ ++ +G Sbjct: 308 AHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGE 367 Query: 370 AQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +IDL++ +S+N+E G TIC L DA ++ ++ FR + ++ Sbjct: 368 GTTEDIDLIFSLSRNMEGGTTICPLSDACVGAVRPALQKFRSEFDAKLK 416 >gi|45658580|ref|YP_002666.1| NADH dehydrogenase subunit I F [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601824|gb|AAS71303.1| NADH dehydrogenase I F subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 443 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 196/409 (47%), Positives = 268/409 (65%), Gaps = 6/409 (1%) Query: 13 YGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 Y +S L S +D + K L+ D II EVK SGLRGRGGAGF TG+KWSF+P Sbjct: 10 YIDNPQSTKLEFYESVHGYDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIP 69 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 K +P Y++ NADE EPGT KDR ++ + PH +IEG +I + AIG++ F Y+RGEF Sbjct: 70 KDIP-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQ 128 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 + +++QAA+DE Y+ G LG N G+D D+I++ GAGAYICGEETAL+ SLEG++G P Sbjct: 129 KGAKAIQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHP 188 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPA GLY PT VNNVE+ + +P IL +GA WYS G E + GT+LFS+SGHV Sbjct: 189 RLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVK 248 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + EL+ CGGI L A+IPGGSSVP L A + + A MD++ + Sbjct: 249 KPGVYEIELGTPLLELVNDLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMA 307 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + LG+ AVIV+ TDI++ +R + FY HESCGQCTPCREGT W+ ++ ++ +G Sbjct: 308 AHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGE 367 Query: 370 AQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +IDL++ +S+N+E G TIC L DA ++ ++ FR + ++ Sbjct: 368 GTTEDIDLIFSLSRNMEGGTTICPLSDACVGAVRPALQKFRSEFDAKLK 416 >gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] Length = 641 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 152/423 (35%), Positives = 234/423 (55%), Gaps = 6/423 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q+R + + + +++ D + RG + + K L + +++EV + LRGRGG Sbjct: 132 FYKYQERTVLGDNEHINPQNIEDYIQRGGYAALVKTLFHMTPESVLDEVDKANLRGRGGG 191 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + +D Y++VN DE +PG DR IM PH ++EG I +FAIGA Sbjct: 192 GFPAGKKWRTT-RDAADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 250 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E+L AA+ + GLLG N G+D + VH GAGA++ GE +A Sbjct: 251 KEGYIYVRAEYPLAVENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSA 310 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ ++EG+ G+PR K A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++ Sbjct: 311 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSK 370 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN VE M T ++I K GG+R + AV GG S C+P Sbjct: 371 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +DYD L ++GS +G+ +I+MD T ++ F ESCG+C PCREG Sbjct: 429 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 488 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ +G ++D L ++S + +CALG A P+ +K FR + I Sbjct: 489 LVDILTRITEGKGTMADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 548 Query: 418 QYH 420 H Sbjct: 549 NKH 551 >gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 645 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ + + ++ K +I + SGLRGRGG Sbjct: 137 FFQAQMRIALRNCGLINPEVIGEYIANDGYFALYDVIHNKKPQEVIEIISKSGLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW+F + D P Y+V NADE +PG DR I+ +PH+++E IA ++IGA Sbjct: 197 GFPTGKKWAFTAQAK-DFPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYSIGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + IYVR E+ + L+ A+ + GLLGS + DI + GAGA++CGEETA Sbjct: 256 NQGIIYVRAEYPIAIKRLELAIRQAREMGLLGSRLFDSEFSFDIDLRLGAGAFVCGEETA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+S G++G+PR +PPFPA G PT +NNVE+ A VP ILR+G +WY+ G E + Sbjct: 316 LLKSAMGQRGEPRPRPPFPAVCGFRNKPTLLNNVETYANVPIILRKGWAWYAAMGTETCK 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FSI+G +N +E M T +I GGI GG AV GG S +PA Sbjct: 376 GTKVFSIAGKINNTGLIEVPMGTTLRTIIYDIGGGIPGG-RAFKAVQTGGPSGGVIPA-H 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L + GS +G+ +IVMD + ++ F + ESCG+CTPCR GT Sbjct: 434 LLDTPIDYESLSQAGSMMGSGGLIVMDETDCMVDIAKFYLQFSQDESCGKCTPCRIGTKR 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +MER+ +G + ++++ L E++ +I+ ++C LG A P+ ++ FR + Sbjct: 494 MLEIMERITQGKGEMKDLEELEELAGDIKDASLCGLGQTAPNPVLSTLRFFREEYIAHVR 553 Query: 418 QYHRCN 423 C Sbjct: 554 D-KTCP 558 >gi|269955282|ref|YP_003325071.1| NADH-quinone oxidoreductase subunit F [Xylanimonas cellulosilytica DSM 15894] gi|269303963|gb|ACZ29513.1| NADH-quinone oxidoreductase, F subunit [Xylanimonas cellulosilytica DSM 15894] Length = 448 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 198/410 (48%), Positives = 251/410 (61%), Gaps = 6/410 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SL ++ ++ + K L I+ VK SGLRGRGGAGF TGMKW F+P + Sbjct: 17 SWSLDTYLAHDGYEGLRKALTMAPADIVAAVKESGLRGRGGAGFPTGMKWGFLP-PDDGK 75 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVNADESEPGTCKD +M P L+EG I S AI H AFIYVRGE + + Sbjct: 76 PRYLVVNADESEPGTCKDIPLMMASPQHLVEGVAITSVAINCHHAFIYVRGEVLHVYRRV 135 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AAV E Y +G LG + G+D+D+ VH GAGAYICGEETALL+SLEG++GQPRLKPPF Sbjct: 136 LAAVQEAYDAGYLGKDILGSGFDLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPPF 195 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT VNNVESIA VP+I+R GA+W++ G E ++G LFS+SGHV P E Sbjct: 196 PAVEGLYARPTVVNNVESIASVPSIVRNGAAWFASMGTEKSQGMGLFSLSGHVTRPGQYE 255 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT EL++ G L PGGSS P + +DY+ + S L Sbjct: 256 APLGITLRELLDMAGG--IRAGHTLKFWTPGGSSTPMFTDAHL-DVPLDYESVGAAKSML 312 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ + D +T +++A R FY HESCG+CTPCREGT WM +V+ R+ G ++ Sbjct: 313 GTRALQIFDETTCVVRATSRWMDFYAHESCGKCTPCREGTFWMKQVLARIEAGGGVDGDL 372 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +LL ++ NI GR CALGD A P+ I+ FR + ID H C F Sbjct: 373 ELLVDLCDNILGRAFCALGDGATSPVTSSIELFRDEYQAHID-GHACPFD 421 >gi|126439968|ref|YP_001058343.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 668] gi|167918265|ref|ZP_02505356.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei BCC215] gi|126219461|gb|ABN82967.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 668] Length = 436 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 266/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE +G LG + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + +F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTSFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|254413257|ref|ZP_05027028.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Microcoleus chthonoplastes PCC 7420] gi|196179877|gb|EDX74870.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Microcoleus chthonoplastes PCC 7420] Length = 538 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 151/415 (36%), Positives = 246/415 (59%), Gaps = 7/415 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI + + + + ++ G + ++ K++ + +++++ SGLRGRGG Sbjct: 112 FFARQMRIVRETSGKIDPERIEEYIAAGGYQSLYKVIHDMTPAEVVDQISKSGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ M K+ + Y++ NADE +PG DR ++ +PH ++EG IA +A+GA Sbjct: 172 GYPTGLKWATMAKMPGE-QKYVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAGYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 AFIYVR E+ + LQ A+ + LLGS +D + + GAGA++CGEETA Sbjct: 231 TQAFIYVRAEYPLAIDRLQKAIKQAKRLSLLGSQIFGSPFDFKVDIRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G PR +PP+PA GL+GCPT +NNVE+ A + I+R GA WY+ G E ++ Sbjct: 291 LIASVEGGRGLPRPRPPYPAQSGLWGCPTLINNVETFANIAVIIREGAEWYANIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT E++E+ GG+ G + AV GG S C+PA Sbjct: 351 GTKVFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPAS- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD +T +I+ F + E+CG+C PCR GT Sbjct: 408 LLDTPVDYDSLVTIGSMMGSGGMVVMDETTSMIEVAQFYMEFCRGETCGKCIPCRVGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 M + + +++KG A R+I+ L ++ ++ ++C LG A P+ ++ FR Sbjct: 468 MYQALTKILKGEATMRDIEQLEQLCGMVKDTSLCGLGQTAPNPVMSTLRYFRDEY 522 >gi|256785936|ref|ZP_05524367.1| NuoF, NADH dehydrogenase subunit [Streptomyces lividans TK24] Length = 448 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 198/411 (48%), Positives = 256/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 28 ESWTLDVYRRHEGYEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 86 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 87 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 146 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E YA+G LG N G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 147 LHEAVREAYAAGFLGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 206 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 207 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQY 266 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 267 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 323 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q + Sbjct: 324 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSD 383 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR EE I C F Sbjct: 384 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGRG-CPFD 433 >gi|172037233|ref|YP_001803734.1| NADH dehydrogenase I subunit F [Cyanothece sp. ATCC 51142] gi|171698687|gb|ACB51668.1| NADH dehydrogenase I chain F [Cyanothece sp. ATCC 51142] Length = 545 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 145/415 (34%), Positives = 245/415 (59%), Gaps = 6/415 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q I N + ++ D ++ G + + +L E + +I EV SGLRGRGG Sbjct: 127 FFAYQKLIVRENSGKIDPDNIDDYIAEGGYQQLHHVLLEMTPNDVIKEVTKSGLRGRGGG 186 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ + Y++ NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 187 GYPTGVKWATVAKMP-GQQKYVICNADEGDPGAFMDRAVLESDPHRILEGMAIAAYAVGA 245 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY+R E+ + L+ A+ + GL+GS +D I + GAGA++CGEETA Sbjct: 246 NHGYIYIRAEYPLAIKRLEKAIQQAKRYGLMGSQIFDSPFDFKIDIRVGAGAFVCGEETA 305 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PP+PA GL+G PT +NNVE+ A + I+R G WY+ G EN++ Sbjct: 306 LIASVEGKRGTPRPRPPYPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSK 365 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M + ++E+ GG+ + AV GG S C+PA Sbjct: 366 GTKVFALTGKIENNGLIEVPMGTSIRTIVEEIGGGVLDQG-TVKAVQTGGPSGGCIPA-H 423 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++YD L+++G+ +G+ +IVMD+ T +++ F + ESCG+C PCR GT Sbjct: 424 LLDTPVEYDSLQKLGTIMGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQ 483 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ +LV+ A ++++D L + + ++ ++C LG A P+ ++ FR Sbjct: 484 LYDLLTKLVERKATQQDLDQLEALCQMVKDTSLCGLGMTAPNPVISTLQYFRDEY 538 >gi|21222950|ref|NP_628729.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289769829|ref|ZP_06529207.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans TK24] gi|7387968|sp|Q9XAQ9|NUOF_STRCO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|5042272|emb|CAB44526.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289700028|gb|EFD67457.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans TK24] Length = 449 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 198/411 (48%), Positives = 256/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 29 ESWTLDVYRRHEGYEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 88 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 147 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E YA+G LG N G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 148 LHEAVREAYAAGFLGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P Sbjct: 208 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQY 267 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 268 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 324 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G Q + Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSD 384 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR EE I C F Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGRG-CPFD 434 >gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 626 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 149/427 (34%), Positives = 238/427 (55%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ + + +S+ + ++ + V K L + + +++E+ S LRGRGG Sbjct: 139 FYARQTRVALEHCGHINAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + + ++ Y+V N DE +PG DR +M +PH +IEG +IA A A Sbjct: 199 GFQTGRKWSQVLQQA-EKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ GLLG N G+D D+ + GAGA++CGE +A Sbjct: 258 NYGYIYVRAEYPLAVKRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ VP+I+ +G+ WY G E N Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNY 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296 GTK F+++G+V + +E M E+I GG++ G AV GG S CL Sbjct: 378 GTKAFALTGNVKHTGLIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGE 435 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +D+D LK++G+ +G+ ++VM+ + +++ F ++ESCG+C PCREGT Sbjct: 436 NHLELPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTK 495 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ +V+G +D+L E+S I +C LG +A+ P++ +K FR + Sbjct: 496 RMLEILTDIVEGRGTLEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFREEYIAHV 555 Query: 417 DQYHRCN 423 +C Sbjct: 556 VD-KKCP 561 >gi|329118904|ref|ZP_08247599.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC BAA-1200] gi|327464932|gb|EGF11222.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC BAA-1200] Length = 431 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 205/418 (49%), Positives = 265/418 (63%), Gaps = 8/418 (1%) Query: 8 IFTNLY--GLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTG 63 IF N+ +L + RG + + KIL + +D +I EVK SGLRGRGGAGF +G Sbjct: 9 IFENVDTTAPDCWTLDAYLQRGGYQALRKILSENTSQDDVIAEVKTSGLRGRGGAGFPSG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSFMP+ Y+V N DE EPGT KDRDI+ + PH LIEG +I +A+GA + Sbjct: 69 LKWSFMPRSFPG-EKYVVCNTDEGEPGTFKDRDIILYNPHALIEGMIIGGYAMGAAAGYN 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+ GE + + A+ + A+G LG N G++ ++ HHG GAYICGEETALLESL Sbjct: 128 YIHGEIFEGYQRFEQALAQARAAGYLGQNILGSGFNFELYAHHGYGAYICGEETALLESL 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGKKGQPR KPPFPA+ GL+G PTT+NN E+ + VP I+R G ++ G EN GTKLF Sbjct: 188 EGKKGQPRFKPPFPASFGLFGKPTTINNTETFSSVPFIIRDGGKTFADKGIENAGGTKLF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 SISGHV P E + F EL+E G L AVIPGGSS P +P M Sbjct: 248 SISGHVERPGNYEVPLGTPFAELLEMAGGM--KNGKKLKAVIPGGSSSPVIPGDVMMTLN 305 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD + + GS LG+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ Sbjct: 306 MDYDSIAKAGSMLGSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIV 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R+V G + ++DLL V N+ GRTICAL DAA +P++G +K++R I+ Sbjct: 366 HRIVNGQGKMEDLDLLESVGNNMAGRTICALADAAVFPVRGFMKHYRDEFIHYIEHGK 423 >gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 598 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 152/427 (35%), Positives = 237/427 (55%), Gaps = 8/427 (1%) Query: 1 MLTD--QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57 ++D + + N + +++ +++SR + + K L E R +I+E+K SGLRGRGG Sbjct: 112 FISDKLEKVVLRNCGFMDPENIEEAVSRDAYLALYKSLKEMSRQDVIDEIKISGLRGRGG 171 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW F D Y+V NADE +PG DR ++ +PH+++E I +AIG Sbjct: 172 GGFPTGLKWQFAFNKDVD-KKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAICGYAIG 230 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 + IY+R E+ L+ A+ + G+LG N ++ + + +GAGA++CGEET Sbjct: 231 SDEGLIYIRAEYPLAINRLKKAIKQANEYGVLGKNIFGTDFNFKVRLKYGAGAFVCGEET 290 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ S+EGK+G+P LKPPFPA G + PT VNNVE++A +P I+ +GA W+ G E + Sbjct: 291 ALIHSMEGKRGEPTLKPPFPAEAGYWKKPTNVNNVETLANIPVIINKGAQWFKSIGTEKS 350 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+F+++G V +E M T E+I GGI AV GG S CL Sbjct: 351 PGTKVFALAGKVKNVGLIEVPMGTTLQEVIFDIGGGITKNRK-FKAVQTGGPSGGCLTEK 409 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+D LKE GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 410 DL-NTPIDFDSLKEKGSMMGSGGMIVMDEDDCMVAVAKFYLGFTVEESCGKCTPCRIGNK 468 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +++++ KG ++ LL ++SK I+ ++C LG + P+ + NF + Sbjct: 469 RLYEILDKITKGKGSVNDLHLLKDLSKTIKRASLCGLGKTSPNPVLSTLNNFYDEYLAHV 528 Query: 417 DQYHRCN 423 +C Sbjct: 529 KD-KKCP 534 >gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 526 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 146/426 (34%), Positives = 232/426 (54%), Gaps = 6/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R + N + ++ + +S+ + ++K + + R II+ +K SGLRGRGGA Sbjct: 40 FYQNQTRLVLKNCGIIDPNNIDEYISQDGYFALNKAIFDLDRKEIIDIIKDSGLRGRGGA 99 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW D Y++ NADE +PG DR ++ +PH+++E I + AIG+ Sbjct: 100 GFPTGRKWEAAFNQDID-TKYIICNADEGDPGAFMDRSVLEFDPHSVLEAMAICARAIGS 158 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + +SLQ A+ + LLG N + DI + GAGA++CGE TA Sbjct: 159 KQGYIYVRAEYPKAVKSLQNAIKQAREYNLLGENIMGSDFSFDIDLRLGAGAFVCGEGTA 218 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ES+EGK+G PR K GL+G PT +NNVE+ A + I+ +G+SW+ FG E + Sbjct: 219 LMESIEGKRGMPRNKEFRTTVKGLWGKPTVINNVETFANIAQIINKGSSWFRSFGTEKSP 278 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V VE M + +++ GI+ AV GG S C+P Sbjct: 279 GTKVFALVGKVKESGLVEVEMGTSIKKIVYDIGLGIQNDKKA-KAVQTGGPSGGCIPTK- 336 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + D++ LKE+GS +G+ ++VMD ++ F ESCG+CTPCR G Sbjct: 337 LFDTACDFESLKEIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++ L KG A + ++ L E+SK + ++C LG ++ PI + F+ + + Sbjct: 397 LFEMLDDLTKGKANEETLEKLEELSKIVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVG 456 Query: 418 QYHRCN 423 + C Sbjct: 457 ENKTCP 462 >gi|332528756|ref|ZP_08404733.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC 19624] gi|332041822|gb|EGI78171.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC 19624] Length = 447 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 215/414 (51%), Positives = 274/414 (66%), Gaps = 7/414 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I+ L G L D SRG ++ + KIL++G +D +I VK SGLRGRGGAGF TG+K Sbjct: 28 IYAGLNGAN-WRLKDYESRGGYEALKKILKEGLTQDQVIATVKESGLRGRGGAGFPTGLK 86 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGTCKDRDI+ + PH +IEG IA++A+G + Y+ Sbjct: 87 WSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMAIAAYAMGITVGYNYI 145 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE E +AA++E A+G LG G+ + HHG GAYICGEETALLESLEG Sbjct: 146 HGEIFEVYERFEAALEEARAAGYLGDKILGSGFSFQLHAHHGFGAYICGEETALLESLEG 205 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK+FS+ Sbjct: 206 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEIGKPNNGGTKIFSV 265 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F +L+E G L AVIPGGSS P LPA M MD Sbjct: 266 SGDVERPGNYEIPLGTPFSKLLELAG--GVKGGKKLKAVIPGGSSAPVLPAHIMMECTMD 323 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + D+++++ RLS FY HESCGQCTPCREGTGW+ R+++R Sbjct: 324 YDSISKAGSMLGSGAVIVMDETRDMVESLKRLSYFYMHESCGQCTPCREGTGWLWRLVDR 383 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +G + ++ L V+ NI GRTICALGDAAA P++ +IK+FRP E I + Sbjct: 384 IERGEGRPEDMATLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALIPK 437 >gi|241763293|ref|ZP_04761350.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN] gi|241367568|gb|EER61855.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN] Length = 451 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 213/419 (50%), Positives = 276/419 (65%), Gaps = 11/419 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ +L G S+ D +RG + + IL K +D +I VK SGLRGRGGAGF Sbjct: 29 IYADLNGSN-WSIKDYEARGGYHALRTILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G Sbjct: 88 TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGITVG 146 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + E +AA++E A+G LG+ G+ + HHG GAYICGEETALLE Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGNGILGTGFSFQLHAHHGFGAYICGEETALLE 206 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GTK Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGTK 266 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V P E + F +L+E G L AVIPGGSS P LPA + Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFSKLLELAGG--VRTGRQLKAVIPGGSSSPVLPASIIMD 324 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWR 384 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++R+ +G + ++D+L V+ NI GRTICALGDAAA P++ +IK+FRP E I Sbjct: 385 LVDRIHRGEGRPADMDVLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALIPNK 443 >gi|83630910|gb|ABC26907.1| HoxF [Arthrospira platensis FACHB341] Length = 531 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 241/417 (57%), Gaps = 7/417 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q +I G + + + + ++ G + + ++ + + ++ E+ SGLRGRGGA Sbjct: 112 FFSRQLKIVREFSGKIDPEKIGEYIAVGGYRALHHVIYDLTPEEVVAEITKSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ Y++ NADE +PG DR ++ +PH ++EG IA +A+GA Sbjct: 172 GYPTGLKWATVAKMPG--QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ LQ A+ + +LGS + +I + GAGA++CGEETA Sbjct: 230 TQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINFNIDIRVGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ G +G PR +PP+PA GL+ CPT +NNVE++ + I+R GA WY+ G E ++ Sbjct: 290 LIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNIAPIIRNGADWYNQIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E M IT E++E+ GGI GG + AV GG S C+PA Q Sbjct: 350 GTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL-QVKAVQTGGPSGGCIPA-Q 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L ++GS +G+ ++VMD +T +++ F + E+CG+C PCR GT Sbjct: 408 FLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYMEFCRGETCGKCIPCRVGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M +++ +L+ A +++ L ++ + ++C LG A P+ ++ F E Sbjct: 468 MYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTAPNPVTSTLQYFESEYLE 524 >gi|253998388|ref|YP_003050451.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. SIP3-4] gi|313200464|ref|YP_004039122.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. MP688] gi|253985067|gb|ACT49924.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. SIP3-4] gi|312439780|gb|ADQ83886.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. MP688] Length = 439 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 206/415 (49%), Positives = 267/415 (64%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 L SL ++ G + + ++++ +I +VK SGLRGRGGAGF TG+KW Sbjct: 20 LRTLGQPDPASLQAYLNVGGYKQLQRLVQDKVKATDVITQVKLSGLRGRGGAGFPTGLKW 79 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ D YLV N DE EPGT KDRDI+R+ PH LIEG IA++ +GA + Y+ Sbjct: 80 SFMPRYY-DGTKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIH 138 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE ++ E + A+DE A+G +G N + D+ HG GAYICGEETAL+ES+EGK Sbjct: 139 GEIWQDYEIFERALDEARAAGFIGENLFGTTFSFDLFAVHGYGAYICGEETALIESIEGK 198 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ G++G PT VNN ES +P IL G + G N+ GTKLFS+S Sbjct: 199 KGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWILEHGGDAFQALGVPNSGGTKLFSVS 258 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M + F EL++ G +G L AVIPGG S +PA + GA MDY Sbjct: 259 GHVERPGNYEVRMGMPFTELLDIAGGVWKG--RQLKAVIPGGPSTAVMPAAAIMGATMDY 316 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DGL + GS LG ++IVMD +T ++K + RLS F+ ESCGQCTPCREGTGW+ RV++R+ Sbjct: 317 DGLSKAGSSLGAGSMIVMDETTCMVKTLKRLSYFFYEESCGQCTPCREGTGWLYRVVKRI 376 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+G + ++DLL +VS NI GRTICALGDAAA P+ IK+FRP E I Sbjct: 377 VEGEGRMGDLDLLTDVSSNISGRTICALGDAAATPVLSFIKHFRPEFEYYIQHGK 431 >gi|145475863|ref|XP_001423954.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391016|emb|CAK56556.1| unnamed protein product [Paramecium tetraurelia] Length = 447 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 246/406 (60%), Positives = 293/406 (72%), Gaps = 15/406 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN+Y + ++ RG W IL G+DWII+E+K SGLRGRGGAGF Sbjct: 23 LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+K+ K S +L GTCKDR+I+RH+PH L+EG + FA+ A A Sbjct: 83 SGLKYLIHAKSQSRWKAFLF--------GTCKDREILRHDPHKLVEGALCVGFAMRARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGEF E +LQ AVDE Y G LG N+ GYD D+ VH GAGAYICGEET L+E Sbjct: 135 YIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK G+PRLKPPFPAN GL+GCPT + V TILRRGA+W++ FGR NNRGTK Sbjct: 195 SLEGKPGKPRLKPPFPANAGLWGCPT------TFQFVATILRRGANWFASFGRPNNRGTK 248 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNL +IPGGSSVP LP Sbjct: 249 LFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCET 308 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ Sbjct: 309 VLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLVD 368 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 ++ER+ G A EID L E++ IEG TICALGDAAAWP+QGLI+ Sbjct: 369 LLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 414 >gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 569 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R N + S+ + ++ G + + K L E +++EVK SGLRGRGG Sbjct: 135 FFKKQKRNALRNCGLINQTSIEEYIAVGGFKALAKTLQEMTPQQVVDEVKKSGLRGRGGG 194 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F+ SD Y+V N DE +PG DR ++ +P+++IE I +A+GA Sbjct: 195 GFPTGLKWQFVLDQKSD-QKYVVCNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGA 253 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + + Y+R E+ + + A+ GLLG+N + + DI + GAGA++CGEETA Sbjct: 254 NKGYAYIRLEYPKAIDHFNKALARAREVGLLGNNILESDFSFDIEIRVGAGAFVCGEETA 313 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG++G+PR +PPFPA GL+ PT +NNVE+ A + I+ G WY+ G E ++ Sbjct: 314 LLASIEGRRGEPRPRPPFPAVSGLFEKPTLLNNVETYASICPIIINGGEWYATMGTEKSK 373 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE + +T E++E GG+ A GG S C+PA Sbjct: 374 GTKVFTLAGKINNTGLVEIPLGLTLREMVEDIGGGVP-NGKAFKAAQTGGPSGGCIPAAY 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ +I++D ST ++ F + ESCG+CTPCR GT Sbjct: 433 L-DTPIDYENLAALGSIVGSGGMIIVDESTCMVDLAKFYLGFTQDESCGKCTPCRIGTKR 491 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ KG+ + ++DLL E++ +I+ +C LG A PI ++ FR E I Sbjct: 492 MLEILERITKGLGKPEDLDLLVELANSIKASALCGLGQTAPNPILSTLRYFRDEFEAHIK 551 Query: 418 QYHRCN 423 C Sbjct: 552 D-KTCP 556 >gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 604 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q R+ N+ + SL D + RG + ++K +L+ + +I E+ SGLRGRGG Sbjct: 118 FYQRQTRVALRNVGLIDPSSLQDYLERGGYRTLEKSLLDMRPEQVIEEIIKSGLRGRGGG 177 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + +P Y++ N DE +PG D IM +PH+++EG +IA++A+GA Sbjct: 178 GFPTGLKWKACAATPA-QPRYIICNGDEGDPGAFMDESIMEGDPHSVLEGMIIAAYAVGA 236 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ + SL+ A++E G LG N +I + G GA++CGEETA Sbjct: 237 SNGFIYVRDEYAQSVASLRKAIEEAENHGFLGENILGSALSFNIEIVRGGGAFVCGEETA 296 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG G+PR K FP+ GL+G PT +NNVE+ A +P I+ RGASW++ G E ++ Sbjct: 297 LIASIEGNVGEPRDKYVFPSEKGLWGQPTIINNVETWANIPVIMERGASWFTSLGTEGSK 356 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V VE M T E+I GG+ G + AV GG S C+P+ Sbjct: 357 GTKVFSLVGKVANTGLVEVPMGTTLREIIFDIGGGVPKG-RSFKAVQTGGPSGGCIPSE- 414 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L + GS +G+ +IVMD T +++ + F ESCG+C PCREG Sbjct: 415 LLDLKVDFDSLSQAGSMMGSGGLIVMDDRTCMVEVVRYYLSFLAGESCGKCVPCREGIKC 474 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ G + +I LL ++++ ++ ++CALG A+ P+ ++ FR E I Sbjct: 475 LLEILTRICHGQGEIGDIALLEDIAETMQQASLCALGRTASNPVLSTLRYFREEYLEHI- 533 Query: 418 QYHRCN 423 + RC Sbjct: 534 EGQRCP 539 >gi|134283882|ref|ZP_01770578.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 305] gi|167718848|ref|ZP_02402084.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei DM98] gi|254298538|ref|ZP_04965990.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 406e] gi|134244671|gb|EBA44769.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 305] gi|157808144|gb|EDO85314.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei 406e] Length = 436 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 203/416 (48%), Positives = 264/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+ E +G LG + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALGEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|183220691|ref|YP_001838687.1| NADH-quinone oxidoreductase subunit F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910792|ref|YP_001962347.1| NADH dehydrogenase subunit F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775468|gb|ABZ93769.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779113|gb|ABZ97411.1| NADH-quinone oxidoreductase, chain F [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 423 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 194/414 (46%), Positives = 265/414 (64%), Gaps = 6/414 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T++ +L S G ++++ K L E + I+N+VK SGLRGRGGAGF TG KW Sbjct: 7 LTTHIDASDSHTLKHYQSVGGYESLKKALSEMTAEQIVNDVKNSGLRGRGGAGFPTGNKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+PK D+P YL+ N DE EPGT KDR ++ PH LIEG IA+ AI +H +IY+R Sbjct: 67 GFIPKT--DKPKYLICNGDEGEPGTFKDRMLIERFPHMLIEGMAIAAKAIDSHQGYIYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF + ++ AV+E Y +GLLG N LGYD D+ V+ GAGAYICGEE+AL+ SLEG+ Sbjct: 125 GEFHKGIRIVETAVEEAYKAGLLGKNIFGLGYDFDLAVYSGAGAYICGEESALINSLEGR 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PRLKPPFPA GLY CPT VNNVE+ VP I+R Y G E + GT+LF++S Sbjct: 185 RGHPRLKPPFPAVSGLYACPTVVNNVETFCNVPHIIRMTGEEYKKIGTEKSPGTRLFAVS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M ELI CGGI+ D L AVIPGGSS P L + A MDY Sbjct: 245 GHVKKPGIYEVEMGTPMKELIFDICGGIKNDKD-LKAVIPGGSSSPILTKDEAMTATMDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + + + S LG+ AVI++ D+++ +RL+ FY HESCGQCTPCREGT W+ ++ ++ Sbjct: 304 ESIASLKSMLGSGAVIILSEEADLVETTYRLAEFYSHESCGQCTPCREGTHWVKDLLHKI 363 Query: 366 VKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 KG +++++L++ +S+N+E G TIC L DA ++ + F+ R+ + Sbjct: 364 KKGEGTEKDVELIFSLSRNMEGGTTICPLADACVMAVRPTMTKFKEEFSLRLKK 417 >gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] Length = 626 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 148/427 (34%), Positives = 237/427 (55%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ + + +S+ + ++ + V K L + + +++E+ S LRGRGG Sbjct: 139 FYARQTRVALEHCGHINAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + + ++ Y+V N DE +PG DR +M +PH +IEG +IA A A Sbjct: 199 GFQTGRKWSQVLQQA-EKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IYVR E+ + LQ A+D+ G LG N G+D D+ + GAGA++CGE +A Sbjct: 258 NYGYIYVRAEYPLAVKRLQMAIDQATKVGFLGKNILNSGFDFDLHISQGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ VP+I+ +G+ WY G E N Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNY 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296 GTK F+++G+V + +E M E+I GG++ G AV GG S CL Sbjct: 378 GTKAFALTGNVKHTGLIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGE 435 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +D+D LK++G+ +G+ ++VM+ + +++ F ++ESCG+C PCREGT Sbjct: 436 NHLELPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTK 495 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ +V+G +D+L E+S I +C LG +A+ P++ +K FR + Sbjct: 496 RMLEILTDIVEGRGTLEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFREEYIAHV 555 Query: 417 DQYHRCN 423 +C Sbjct: 556 VD-KKCP 561 >gi|113867075|ref|YP_725564.1| NADH dehydrogenase chain F [Ralstonia eutropha H16] gi|113525851|emb|CAJ92196.1| NADH dehydrogenase chain F [Ralstonia eutropha H16] Length = 431 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 209/421 (49%), Positives = 275/421 (65%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + +I +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLDGKN-WHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH+LIEG I ++A+G + Sbjct: 69 GLKWSFMPRTFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMAIGAYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+G LG N G+D + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEEALEEARAAGFLGDNILGSGFDFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN GTK+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKLGKPNNGGTKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FSISG V P E + F +L+E G G + AVIPGGSS P +P M + Sbjct: 248 FSISGDVERPGNYEIPLGTPFAKLLELAGGM--RGGKRIKAVIPGGSSAPVVPGDLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R+ Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRM 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + ++ + Sbjct: 366 VNRIEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp. PCC 7120] gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp. PCC 7120] Length = 544 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 143/411 (34%), Positives = 237/411 (57%), Gaps = 5/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + ++ + + ++L E +++ V SGLRGRGGAG+ TG+KW Sbjct: 126 VLENSGKIDPERIQAYIAAQGYQGLYQVLREMTPAAVVDSVSRSGLRGRGGAGYPTGLKW 185 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K + +++ NADE +PG DR ++ +PH ++EG IA++A+GA +IYVR Sbjct: 186 ATVAKAKGE-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGASQGYIYVR 244 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L A+ + GLLGSN + +D I + GAGAY+CGEETAL+ S+EGK Sbjct: 245 AEYPIAIKRLHTAIHQAQRLGLLGSNIFESPFDFKIDIRIGAGAYVCGEETALMASIEGK 304 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G P +PP+PA GL+G PT +NNVE+ A + I+R+GA W++ G ++GTK+F+++ Sbjct: 305 RGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRKGADWFASIGTAKSKGTKVFALA 364 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + +E M + +++ + GGI G AV GG S C+PA +DY Sbjct: 365 GKIRNTGLIEVPMGTSLRQIVAEMGGGIPDGG-VAKAVQTGGPSGGCIPASA-FDTPVDY 422 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L +GS +G+ +IVMD +T+++ F ESCG+C PCR GT + ++ ++ Sbjct: 423 ESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHGLLSKI 482 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +G A +++LL E+ ++ ++C LG +A P+ + FR I Sbjct: 483 REGKASLADLELLEELCDMVKNTSLCGLGQSAPNPVFSTLHYFRDEYLALI 533 >gi|256396787|ref|YP_003118351.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila DSM 44928] gi|256363013|gb|ACU76510.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila DSM 44928] Length = 441 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 201/411 (48%), Positives = 260/411 (63%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L+ R + V + L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 17 EPWTLAGYQRRDGYTAVKQALRMHPDEVIQLVKDSGLRGRGGAGFPTGMKWGFIPQND-G 75 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD M PH L+EG +IA +AI A AFIYVRGE + Sbjct: 76 KPHYLVVNADESEPGTCKDIPFMMANPHELVEGVIIACYAIRASHAFIYVRGEVLHVLRR 135 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQAAV E Y +G LG +D+++ VH GAGAYICGEETALL+SLEGK+GQPRL+PP Sbjct: 136 LQAAVREAYDAGFLGKGVFGTDFDLELTVHAGAGAYICGEETALLDSLEGKRGQPRLRPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVESI VP I+R G W+ G G E + G L+S+SGHV +P Sbjct: 196 FPAVAGLYASPTCVNNVESIGSVPAIVRNGVDWFKGMGSEKSPGFTLYSLSGHVKHPGQY 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL+ + GG+R L PGGSS P + +DY+G+ GS Sbjct: 256 EAPLGITLRELL-DYAGGVR-PGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A R + FY HESCG+CTPCREGT W++++++R+ KG + + Sbjct: 313 LGTKALQIFDETTCVVRAALRWTEFYAHESCGKCTPCREGTYWLVQILKRMEKGEGTEDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + L ++ NI G+ CALGD AA PIQ +K FR E ++ C F Sbjct: 373 LGKLLDLCDNIVGKAFCALGDGAAAPIQSSLKYFRDEYLEHFERGG-CPFD 422 >gi|431020|gb|AAA03537.1| NADH dehydrogenase [Escherichia coli] Length = 445 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 171/406 (42%), Positives = 239/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G +G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ RL +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRRLERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|78485167|ref|YP_391092.1| NADH-quinone oxidoreductase, F subunit [Thiomicrospira crunogena XCL-2] gi|78363453|gb|ABB41418.1| NADH dehydrogenase I chain F [Thiomicrospira crunogena XCL-2] Length = 426 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 201/421 (47%), Positives = 263/421 (62%), Gaps = 6/421 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGA 58 M+ + F + + ++ G ++ K+L E II+EVKAS +RGRGGA Sbjct: 1 MVHQNENCFRLNHLDNSWDIETYIANGGYEVWKKVLAGEMSPQEIIDEVKASNIRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWSFM + P Y+V N+DE EPGT KDRDI+R+ PH L+EG +IA + IGA Sbjct: 61 GFPTGLKWSFMNRAAPG-PKYIVCNSDEGEPGTFKDRDILRYNPHALVEGMMIAGYVIGA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+RGEF + Q A+D+ +G LG N GYD ++ H GAGAYICGEETA Sbjct: 120 CAGYNYIRGEFWEPYQRFQGAIDQARKAGFLGKNILGSGYDFELFTHLGAGAYICGEETA 179 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E++A +P IL +G W+ G N Sbjct: 180 LIESLEGKKGQPRFKPPFPASYGLYGKPTTINNTETLASIPMILAKGGDWFCDLGVPNAG 239 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK +S+SGHVN P E M F +L+E G +G L AVIPGG+S LPA + Sbjct: 240 GTKCYSVSGHVNNPGNFEVRMGTPFKDLLELAGGIWKG--RELKAVIPGGASTAILPAEK 297 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 MDYD + + GS LG +VI+MD TDI+K + LS FY ESCGQCTPCREGTGW Sbjct: 298 AMAMNMDYDSIAKAGSFLGAGSVIIMDDQTDIVKVMENLSHFYWDESCGQCTPCREGTGW 357 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + RV++R+ G + +I+ L +VS I GR IC LGDAA + ++++ ID Sbjct: 358 LYRVLKRIRSGKGRPEDIEALKDVSGKIMGRVICGLGDAATIGLTSALEHYEHEFRHYID 417 Query: 418 Q 418 Sbjct: 418 H 418 >gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 626 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 238/426 (55%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + +QD I + + S+ D ++RG ++++ K L + II VKASGLRGRGG Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D ++V N DE +PG +R ++ +PH ++EG +IA +A+GA Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ + + A+++ GLLG N G+ D+ V GAGA++CGEETA Sbjct: 260 QKGYAYIRAEYPFAVKMFKKAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR KPPFPA GL+G PT +NNVE+ A +P ILR G Y G EN+ Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T ++I CGG + AV GG S CL Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSRACLSEDF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK+ + +G+ ++V+ + T +++ F K ESCG+C PCREGT Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ G A ++ L +SK I+ ++C LG A PI +K FR I+ Sbjct: 498 AYNILEKFTHGKATYEDLKALEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557 Query: 418 QYHRCN 423 C Sbjct: 558 --GECP 561 >gi|73540669|ref|YP_295189.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134] gi|72118082|gb|AAZ60345.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134] Length = 431 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 208/421 (49%), Positives = 273/421 (64%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + +I +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLDGKN-WHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R PH+LIEG I ++A+G + Sbjct: 69 GLKWSFMPRTFPG-QKYLVCNTDEGEPGTFKDRDIIRFNPHSLIEGMAIGAYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+G LG N G+ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN GTK+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPENYLKMGKPNNGGTKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FSISG V P E + F +L+E G G + AVIPGGSS P +P M + Sbjct: 248 FSISGDVERPGNYEIPLGTPFAKLLELAGGM--RGGKRIKAVIPGGSSAPVVPGEMMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R+ Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRM 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + ++ + Sbjct: 366 VNRIEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|238028138|ref|YP_002912369.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Burkholderia glumae BGR1] gi|237877332|gb|ACR29665.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Burkholderia glumae BGR1] Length = 438 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 270/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I NL G L D ++RG + + +I+E+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILANLNGEN-WRLEDYVARGGYQQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH +IEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHAVIEGMAIGAYAMGITAGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA++E A+G LG+N + + HHG GAY+CGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALEEARAAGYLGANILGSEFSFQLHAHHGYGAYVCGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQHYLELGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G L AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEVPLGTPFSALLELAGGM--RGGRKLKAVIPGGSSAPVIPGDTMMQIDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV++R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVKR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G +K ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEDGQGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|218780402|ref|YP_002431720.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218761786|gb|ACL04252.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like) [Desulfatibacillum alkenivorans AK-01] Length = 1044 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 154/423 (36%), Positives = 245/423 (57%), Gaps = 6/423 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60 + + R+ + S+ ++ G + + ++L + + EV + LRGRGGAGF Sbjct: 132 MKQERRVLALCGRIDPTSIEHYIAAGGYQALVRVLSGMAPEQVAQEVIDAKLRGRGGAGF 191 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F + + P Y++ NADE +PG DR I+ +PH++IEG +I +FA+GA Sbjct: 192 PAGLKWKFARQSSA-NPKYIICNADEGDPGAFMDRAILEGDPHSVIEGMIIGAFAMGARY 250 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIYVR E+ E L A+ + G+LG N G+ + + GAGA++CGEETAL+ Sbjct: 251 GFIYVREEYPIAVEHLNCAIAQAGELGILGENILGTGFSFSLSLKMGAGAFVCGEETALM 310 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G PR +PPFPA G+ G P+ +NNVE+ A VP IL+ GA WY+ G EN++GT Sbjct: 311 ASIEGKRGMPRARPPFPAQSGVDGKPSNINNVETFANVPLILKNGAGWYAQVGTENSKGT 370 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS++G VN VE + + E++ GGI G AV GG S C+PA Q Sbjct: 371 KIFSLAGKVNNTGLVEVPIGTSIREVVFDIGGGIPKGRK-FKAVQMGGPSGGCVPA-QFL 428 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD L+++G+ +G+ ++VMD + +++ F + ESCG+C+PCR GT ++ Sbjct: 429 NLSIDYDTLQKIGAIMGSGGMVVMDENNCMVEIARFFLAFTQSESCGKCSPCRLGTTQLL 488 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ G + +I+ + E+ + + ++C LG A P ++ F E+ I + Sbjct: 489 EILTRITTGRGRLEDIETIKEIGRTMTEASLCGLGQNCAKPAISTLQYFLKEYEDHILE- 547 Query: 420 HRC 422 +RC Sbjct: 548 NRC 550 >gi|53725814|ref|YP_103429.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344] gi|67642187|ref|ZP_00440947.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8 horse 4] gi|121600821|ref|YP_992474.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1] gi|124384341|ref|YP_001026723.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229] gi|126448595|ref|YP_001079992.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247] gi|167000363|ref|ZP_02266181.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20] gi|254175777|ref|ZP_04882437.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399] gi|254202105|ref|ZP_04908468.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH] gi|254207435|ref|ZP_04913785.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU] gi|254359857|ref|ZP_04976127.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei 2002721280] gi|52429237|gb|AAU49830.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344] gi|121229631|gb|ABM52149.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1] gi|124292361|gb|ABN01630.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229] gi|126241465|gb|ABO04558.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247] gi|147746352|gb|EDK53429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH] gi|147751329|gb|EDK58396.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU] gi|148029097|gb|EDK87002.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei 2002721280] gi|160696821|gb|EDP86791.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399] gi|238523283|gb|EEP86722.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8 horse 4] gi|243063697|gb|EES45883.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20] Length = 436 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 203/416 (48%), Positives = 264/416 (63%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA+DE +G LG + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAVMPVRGMLKHYWDEFAYHVEHKH 424 >gi|118602280|ref|YP_903495.1| NADH-quinone oxidoreductase, F subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567219|gb|ABL02024.1| NADH dehydrogenase subunit F [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 422 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 212/415 (51%), Positives = 268/415 (64%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 F +L Q SL + G + KIL E ++II+E+K SGLRGRGGAGF TG+KW Sbjct: 6 FKSLIKDQCWSLKTYEANGGYSVWCKILKGELTPEYIIDELKTSGLRGRGGAGFPTGLKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ SD Y++ N+DE EPGTCKDRDI+R PH +IEG I F + A + Y+R Sbjct: 66 SFMPR-HSDGQKYVICNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF+ + A+ E Y GLLG N + D+ H GAGAYICGEETALLES+EGK Sbjct: 125 GEFMEPFYRFEDALKEAYKVGLLGRNINNSSVNFDLYTHLGAGAYICGEETALLESIEGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPANVGL+G PT +NN ES A VP ILR G W++ G EN+ G KLFS+S Sbjct: 185 KGQPRFKPPFPANVGLFGKPTMINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M F +L++ G L AVIPGGSS P L A MDY Sbjct: 245 GHVKNPANFEVPMGTPFKDLLKMAGGM--RDGARLKAVIPGGSSTPVLTAKVAMNMTMDY 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DG+++ GS LG +VI+MD ST +++ + RL+ FY ESCGQCTPCREGTGW+ RV++R+ Sbjct: 303 DGIEKAGSMLGAGSVIIMDESTCMVEVLTRLTHFYYDESCGQCTPCREGTGWLYRVLKRI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ +IDLL V I G TICALGDAAA P++ ++NFR + I+ Sbjct: 363 IDGNGEQTDIDLLLGVQDKIIGNTICALGDAAAMPVESFLRNFRLEFKYYIEHGK 417 >gi|291613543|ref|YP_003523700.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus ES-1] gi|291583655|gb|ADE11313.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus ES-1] Length = 420 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 210/407 (51%), Positives = 273/407 (67%), Gaps = 7/407 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + G + + K+L + + II EVKASGLRGRGGAGF TG+KWSFMP+ Sbjct: 16 NLDNYIKAGGYQALRKVLAEKLSPEAIIAEVKASGLRGRGGAGFPTGLKWSFMPRNYQG- 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YLV N+DE EPGTCKDRDI+R+ PH LIEG IA++ + + YV GE E + Sbjct: 75 DKYLVCNSDEGEPGTCKDRDILRYNPHLLIEGMAIAAYTMDVKTGYNYVHGEIFEAYERM 134 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A +E +G LG N ++ D+ H G GAY+CGEETALLES+EGKKGQPR KPPF Sbjct: 135 EEACEEARKAGYLGKNIMGFDFEFDLHNHMGYGAYVCGEETALLESIEGKKGQPRFKPPF 194 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ GLYG PTT+NN E+ A +P I+R G ++G G N+ G KLFS+SGHVN P E Sbjct: 195 PASFGLYGKPTTINNTETFASIPYIIREGGQKFAGLGVTNSGGVKLFSVSGHVNNPGNFE 254 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + F +L+E G L AVIPGGSS+P LPA M G MD+D +++ GS L Sbjct: 255 MPLGTPFMKLLEMAGG--VRNGHKLKAVIPGGSSMPVLPAEIMMGLNMDFDSIQKAGSYL 312 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IVMD +T ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+ G + ++ Sbjct: 313 GTGAIIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIEHGEGRPEDL 372 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 DLL ++ NI GRTICALGDAAAWP+QG +K++R E I ++ RC Sbjct: 373 DLLLDLCGNIAGRTICALGDAAAWPVQGFLKHYRAEFEYHI-EHKRC 418 >gi|15802831|ref|NP_288858.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 EDL933] gi|15832422|ref|NP_311195.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. Sakai] gi|24113656|ref|NP_708166.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 301] gi|30063710|ref|NP_837881.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 2457T] gi|74312802|ref|YP_311221.1| NADH dehydrogenase I subunit F [Shigella sonnei Ss046] gi|82544762|ref|YP_408709.1| NADH dehydrogenase I subunit F [Shigella boydii Sb227] gi|157155010|ref|YP_001463627.1| NADH dehydrogenase I subunit F [Escherichia coli E24377A] gi|157161772|ref|YP_001459090.1| NADH dehydrogenase I subunit F [Escherichia coli HS] gi|168748133|ref|ZP_02773155.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4113] gi|168755036|ref|ZP_02780043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4401] gi|168761277|ref|ZP_02786284.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4501] gi|168767910|ref|ZP_02792917.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4486] gi|168772990|ref|ZP_02797997.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4196] gi|168780139|ref|ZP_02805146.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4076] gi|168787191|ref|ZP_02812198.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC869] gi|168798454|ref|ZP_02823461.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC508] gi|170019407|ref|YP_001724361.1| NADH dehydrogenase I subunit F [Escherichia coli ATCC 8739] gi|187730354|ref|YP_001881105.1| NADH dehydrogenase I subunit F [Shigella boydii CDC 3083-94] gi|191166468|ref|ZP_03028298.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A] gi|193068131|ref|ZP_03049095.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019] gi|195935661|ref|ZP_03081043.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. EC4024] gi|208808283|ref|ZP_03250620.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4206] gi|208813079|ref|ZP_03254408.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4045] gi|208821937|ref|ZP_03262257.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4042] gi|209395949|ref|YP_002271693.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4115] gi|209919732|ref|YP_002293816.1| NADH dehydrogenase I subunit F [Escherichia coli SE11] gi|217327207|ref|ZP_03443290.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. TW14588] gi|218548267|ref|YP_002382058.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ATCC 35469] gi|218554840|ref|YP_002387753.1| NADH dehydrogenase I subunit F [Escherichia coli IAI1] gi|218695883|ref|YP_002403550.1| NADH dehydrogenase I subunit F [Escherichia coli 55989] gi|218705814|ref|YP_002413333.1| NADH dehydrogenase I subunit F [Escherichia coli UMN026] gi|254794176|ref|YP_003079013.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. TW14359] gi|261223262|ref|ZP_05937543.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7 str. FRIK2000] gi|261259188|ref|ZP_05951721.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7 str. FRIK966] gi|291283525|ref|YP_003500343.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7 str. CB9615] gi|293405750|ref|ZP_06649742.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412] gi|293446621|ref|ZP_06663043.1| NADH oxidoreductase [Escherichia coli B088] gi|298381433|ref|ZP_06991032.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302] gi|300818115|ref|ZP_07098327.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1] gi|300822155|ref|ZP_07102297.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7] gi|300896958|ref|ZP_07115439.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1] gi|300903669|ref|ZP_07121585.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1] gi|300918551|ref|ZP_07135141.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1] gi|300924543|ref|ZP_07140507.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1] gi|301024082|ref|ZP_07187796.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1] gi|301303257|ref|ZP_07209382.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1] gi|301328776|ref|ZP_07221824.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1] gi|307311156|ref|ZP_07590800.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W] gi|309793163|ref|ZP_07687591.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7] gi|331668982|ref|ZP_08369830.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271] gi|331678230|ref|ZP_08378905.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591] gi|331683955|ref|ZP_08384551.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299] gi|12516634|gb|AAG57413.1|AE005460_7 NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. EDL933] gi|13362638|dbj|BAB36591.1| NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. Sakai] gi|24052720|gb|AAN43873.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 301] gi|30041965|gb|AAP17691.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 2457T] gi|73856279|gb|AAZ88986.1| NADH dehydrogenase I chain F [Shigella sonnei Ss046] gi|81246173|gb|ABB66881.1| NADH dehydrogenase I chain F [Shigella boydii Sb227] gi|157067452|gb|ABV06707.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli HS] gi|157077040|gb|ABV16748.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E24377A] gi|169754335|gb|ACA77034.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli ATCC 8739] gi|187427346|gb|ACD06620.1| NADH-quinone oxidoreductase, F subunit [Shigella boydii CDC 3083-94] gi|187771025|gb|EDU34869.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4196] gi|188017288|gb|EDU55410.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4113] gi|189001980|gb|EDU70966.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4076] gi|189357618|gb|EDU76037.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4401] gi|189362935|gb|EDU81354.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4486] gi|189368325|gb|EDU86741.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4501] gi|189372792|gb|EDU91208.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC869] gi|189378940|gb|EDU97356.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC508] gi|190903428|gb|EDV63147.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A] gi|192958410|gb|EDV88849.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019] gi|208728084|gb|EDZ77685.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4206] gi|208734356|gb|EDZ83043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4045] gi|208742060|gb|EDZ89742.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4042] gi|209157349|gb|ACI34782.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. EC4115] gi|209765108|gb|ACI80866.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765110|gb|ACI80867.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765112|gb|ACI80868.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765114|gb|ACI80869.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209765116|gb|ACI80870.1| NADH dehydrogenase I chain F [Escherichia coli] gi|209912991|dbj|BAG78065.1| NADH dehydrogenase I chain F [Escherichia coli SE11] gi|217319574|gb|EEC27999.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7 str. TW14588] gi|218352615|emb|CAU98396.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli 55989] gi|218355808|emb|CAQ88421.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia fergusonii ATCC 35469] gi|218361608|emb|CAQ99200.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI1] gi|218432911|emb|CAR13805.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli UMN026] gi|254593576|gb|ACT72937.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7 str. TW14359] gi|281601725|gb|ADA74709.1| NADH dehydrogenase I chain F [Shigella flexneri 2002017] gi|290763398|gb|ADD57359.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7 str. CB9615] gi|291323451|gb|EFE62879.1| NADH oxidoreductase [Escherichia coli B088] gi|291427958|gb|EFF00985.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412] gi|298278875|gb|EFI20389.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302] gi|300359226|gb|EFJ75096.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1] gi|300396738|gb|EFJ80276.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1] gi|300404325|gb|EFJ87863.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1] gi|300414286|gb|EFJ97596.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1] gi|300419261|gb|EFK02572.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1] gi|300525285|gb|EFK46354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7] gi|300529259|gb|EFK50321.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1] gi|300841431|gb|EFK69191.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1] gi|300844838|gb|EFK72598.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1] gi|306908662|gb|EFN39159.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W] gi|308123449|gb|EFO60711.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7] gi|313651107|gb|EFS15506.1| NADH oxidoreductase, F subunit [Shigella flexneri 2a str. 2457T] gi|315061576|gb|ADT75903.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli W] gi|315255218|gb|EFU35186.1| NADH oxidoreductase, F subunit [Escherichia coli MS 85-1] gi|320177166|gb|EFW52178.1| NADH-ubiquinone oxidoreductase chain F [Shigella dysenteriae CDC 74-1112] gi|320183379|gb|EFW58231.1| NADH-ubiquinone oxidoreductase chain F [Shigella flexneri CDC 796-83] gi|320192095|gb|EFW66740.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7 str. EC1212] gi|320641111|gb|EFX10590.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. G5101] gi|320646499|gb|EFX15418.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str. 493-89] gi|320651596|gb|EFX19976.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str. H 2687] gi|320657348|gb|EFX25150.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663050|gb|EFX30367.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str. USDA 5905] gi|320667868|gb|EFX34776.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str. LSU-61] gi|323184397|gb|EFZ69773.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1357] gi|323377844|gb|ADX50112.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli KO11] gi|323967725|gb|EGB63137.1| NADH oxidoreductase [Escherichia coli M863] gi|323977515|gb|EGB72601.1| NADH oxidoreductase [Escherichia coli TW10509] gi|324020880|gb|EGB90099.1| NADH oxidoreductase, F subunit [Escherichia coli MS 117-3] gi|324112816|gb|EGC06792.1| NADH oxidoreductase [Escherichia fergusonii B253] gi|324117838|gb|EGC11737.1| NADH oxidoreductase [Escherichia coli E1167] gi|325496681|gb|EGC94540.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ECD227] gi|326339635|gb|EGD63446.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7 str. 1125] gi|326344097|gb|EGD67858.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7 str. 1044] gi|327252554|gb|EGE64213.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli STEC_7v] gi|331064176|gb|EGI36087.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271] gi|331074690|gb|EGI46010.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591] gi|331078907|gb|EGI50109.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299] gi|332093612|gb|EGI98670.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 3594-74] gi|332344065|gb|AEE57399.1| NADH oxidoreductase NuoF [Escherichia coli UMNK88] gi|332754932|gb|EGJ85297.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri 4343-70] gi|332755333|gb|EGJ85697.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-671] gi|332756192|gb|EGJ86543.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri 2747-71] gi|332766103|gb|EGJ96313.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri 2930-71] gi|333001428|gb|EGK20996.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri VA-6] gi|333001728|gb|EGK21294.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-218] gi|333002651|gb|EGK22211.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-272] gi|333016398|gb|EGK35729.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-304] gi|333016535|gb|EGK35865.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-227] Length = 445 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] Length = 640 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 153/423 (36%), Positives = 232/423 (54%), Gaps = 6/423 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI + + +++ D + RG + + K L + ++ EV + LRGRGG Sbjct: 131 FYKYQKRIVLGDNEHINPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + +D Y++VN DE +PG DR IM PH ++EG I +FAIGA Sbjct: 191 GFPAGKKWRTT-RDAADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E+L AA+ + GLLG N G+D + VH GAGA++ GE +A Sbjct: 250 KEGYIYVRAEYPLAVENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ ++EG+ G+PR K A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++ Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN VE M T ++I K GG+R + AV GG S C+P Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +DYD L ++GS +G+ +I+MD T ++ F ESCG+C PCREG Sbjct: 428 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ +G ++D L ++S + +CALG A P+ +K FR + I Sbjct: 488 LVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547 Query: 418 QYH 420 H Sbjct: 548 NKH 550 >gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] Length = 490 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 152/424 (35%), Positives = 233/424 (54%), Gaps = 6/424 (1%) Query: 4 DQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q RI T N + +SL D ++ ++ + K L ++ +K +GLRGRGG GF T Sbjct: 8 KQLRIATRNCGFIDPESLDDYIAVRGYEALAKALTMTPAEVVEIIKVAGLRGRGGGGFPT 67 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW +D Y+V NADE +PG DR ++ +PH+++E I +AIGA Sbjct: 68 GVKWGIALSNAAD-QKYIVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATLGA 126 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 +Y+R E+ + L+ A+D+ A GLLG N G+D DI + +GAGA++CGEETAL++S Sbjct: 127 VYIRAEYPLAIKRLRKAIDDARAMGLLGKNIFGSGFDFDIEIKYGAGAFVCGEETALIKS 186 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG +G+P KPPFPA G + PT VNNVE+ A VP I+ +GA W++G G ++GTK+ Sbjct: 187 MEGHRGEPVSKPPFPAQSGYWAKPTIVNNVETFANVPAIIIKGADWFAGIGTATSKGTKV 246 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G + +E M T E+I GG G + AV GG S L A + Sbjct: 247 FALAGKIVNVGLIEVPMGTTLREVIFDIGGGCPDGKE-FKAVQTGGPSGGAL-ANKDLDV 304 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + + Sbjct: 305 AIDYESLIARKSMMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEI 364 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++++ KG K ++ L +S NI+ +C LG PI + F E + Q + Sbjct: 365 LDKITKGHGTKADLARLKSLSDNIKDTALCGLGQTMPNPILSTMDTFGHEYEAHVTQ-KK 423 Query: 422 CNFQ 425 C Sbjct: 424 CPAH 427 >gi|293415577|ref|ZP_06658220.1| NADH oxidoreductase [Escherichia coli B185] gi|291433225|gb|EFF06204.1| NADH oxidoreductase [Escherichia coli B185] Length = 445 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] Length = 626 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 238/426 (55%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + +QD I + + S+ D ++RG ++++ K L + II VKASGLRGRGG Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D ++V N DE +PG +R +++ +PH ++EG +IA +A+GA Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLKRDPHLVLEGMIIAGYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ + A+++ GLLG N G+ D+ V GAGA++CGEETA Sbjct: 260 QKGYAYIRAEYPFAVRMFKKAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR KPPFPA GL+G PT +NNVE+ A +P ILR G Y G EN+ Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T ++I CGG + AV GG S CL Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK+ + +G+ ++V+ + T +++ F K ESCG+C PCREGT Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ G A ++ L +SK I+ ++C LG A PI +K FR I+ Sbjct: 498 AYNILEKFTHGKATYEDLKALEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557 Query: 418 QYHRCN 423 C Sbjct: 558 --GECP 561 >gi|269926644|ref|YP_003323267.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798] gi|269790304|gb|ACZ42445.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798] Length = 580 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 167/422 (39%), Positives = 253/422 (59%), Gaps = 7/422 (1%) Query: 5 QDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N +SL D ++ G + ++K L E +D II EVKAS LRGRGGAGF Sbjct: 139 QHRILLANCGWQNPESLEDYLALGGFSALEKALFEMSQDEIIAEVKASNLRGRGGAGFPA 198 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW + +RP Y++VNA E EP KDR ++ +P+ +IEG +IA++A+G + + Sbjct: 199 GIKWES-ARSERNRPKYVIVNAHEGEPNVFKDRRLIEGDPYAVIEGLMIAAWAVGVNDGY 257 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IYV E+ E L A+ + GLLG + G+D DI V GAGAYI GE +A + Sbjct: 258 IYVGSEYPLAMERLNRAIRRMHQVGLLGKDILGSGFDFDIKVVPGAGAYISGEASAAIYG 317 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 ++G+KG PR KPP A GL+G PT VNNVE++A VP I+ +GA W++ G EN+ GTK+ Sbjct: 318 IQGQKGFPRTKPPRSAEAGLWGKPTVVNNVETLANVPHIINKGAQWFASIGTENSTGTKV 377 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++G +N+ VE M IT +L+ GG+R G AV+ GG S LP + Sbjct: 378 FSLAGDINHVSLVEADMGITMRDLLFVAGGGMRNGAK-FKAVLAGGISGGALPESTL-DL 435 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 ++ L+ GS +G+ I+ D +T ++ + + F + ESCG+C PCR GT + + Sbjct: 436 TNEFGTLEAEGSMMGSGGYIIYDENTCMVDLAFYCTRFNRDESCGKCVPCRIGTSAQLAM 495 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R++KG+ ++ +ID L + S++I ++C LG AA P+ ++++FR +E I + R Sbjct: 496 LDRIMKGLGEEIDIDRLTQSSEDIIAYSLCGLGQAAPIPVLSVLRHFRDEVEAHIRE-KR 554 Query: 422 CN 423 C Sbjct: 555 CP 556 >gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] Length = 640 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 153/423 (36%), Positives = 230/423 (54%), Gaps = 6/423 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI + + +++ D + RG + + K L + ++ EV + LRGRGG Sbjct: 131 FYKYQKRIVLGDNEHINPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW D Y++VN DE +PG DR IM PH ++EG I +FAIGA Sbjct: 191 GFPAGKKWRTTHDAA-DPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E+L AA+ + GLLG N G+D + VH GAGA++ GE +A Sbjct: 250 KEGYIYVRAEYPLAVENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ ++EG+ G+PR K A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++ Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN VE M T ++I K GG+R + AV GG S C+P Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +DYD L ++GS +G+ +I+MD T ++ F ESCG+C PCREG Sbjct: 428 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ +G ++D L ++S + +CALG A P+ +K FR + I Sbjct: 488 LVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547 Query: 418 QYH 420 H Sbjct: 548 NKH 550 >gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8] Length = 626 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 160/426 (37%), Positives = 237/426 (55%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + +QD I + + S+ D ++R ++++ K L + II VKASGLRGRGG Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARSGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D ++V N DE +PG +R ++ +PH ++EG +IA +A+GA Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ + + A+++ GLLG N G+ D+ V GAGA++CGEETA Sbjct: 260 QKGYAYIRAEYPFAVKMFKKAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR KPPFPA GL+G PT +NNVE+ A +P ILR G Y G EN+ Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T ++I CGG + AV GG S CL Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK+ + +G+ ++V+ + T +++ F K ESCG+C PCREGT Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ G A ++ L +SK I+ ++C LG A PI +K FR I+ Sbjct: 498 AYNILEKFTHGKATYEDLKTLEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557 Query: 418 QYHRCN 423 C Sbjct: 558 --GECP 561 >gi|190893218|ref|YP_001979760.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652] gi|190698497|gb|ACE92582.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli CIAT 652] Length = 421 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 195/423 (46%), Positives = 261/423 (61%), Gaps = 6/423 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + + N+ G LS + G + + K+L E D +I+ VK S LRGRGGAGF TG Sbjct: 3 EPILLKNVDVRGGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++ Sbjct: 63 MKWGFVPKRT-GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE++ L+ A+ E +A G LG ++ + +H GAGAYICGEETA+LESL Sbjct: 122 YIRGEYVTAIRRLEQAIAEAHARGYLGKRILGSDFNFAVHIHCGAGAYICGEETAMLESL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RGA W+ G G + + G KL+ Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLY 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG V P E M I EL+E H GG+ + AVIPGG S P +P + Sbjct: 242 CLSGQVRKPGLYELPMGIALRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPEHGLE-VG 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++V+ Sbjct: 300 MDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+ G +++ L + K I G T CALGD AA ++ + +FR I+ HRC Sbjct: 360 RRIEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIED-HRC 418 Query: 423 NFQ 425 F Sbjct: 419 PFH 421 >gi|42524473|ref|NP_969853.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100] gi|39576682|emb|CAE80846.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100] Length = 430 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 204/416 (49%), Positives = 277/416 (66%), Gaps = 5/416 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + ++ T Y L + ++L+ ++G ++ + K + II+EVKASGLRGRGGAGF TG Sbjct: 3 EVKMLTEFYHLPEYQTLAGYKAKGGYETLHKAFKMQPQAIIDEVKASGLRGRGGAGFPTG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKW F+PK P YL+ NADE EPGT KDR +M PH LIEG +I++FAIG+H +I Sbjct: 63 MKWGFLPKN--GEPRYLLCNADEGEPGTFKDRMMMERAPHQLIEGMIISAFAIGSHKGYI 120 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVRGE++ E L A+ E YA+GLLG N G+D D+ V+ GAGAYICGEET ++ SL Sbjct: 121 YVRGEYVFPIECLNKAIKEAYAAGLLGKNILGSGFDFDLDVYRGAGAYICGEETGMISSL 180 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG KGQP+LKPPFPA G PT VNNVE++A V I++ GA Y G E + GTKLF Sbjct: 181 EGLKGQPKLKPPFPAVQGYLRKPTIVNNVETLAAVTYIIKDGAQAYRKHGTEKSAGTKLF 240 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SG+V P E + +LI K GG++ G L AVIPGGSS P L A ++ A Sbjct: 241 SLSGNVMTPGNFEVPLGYPLMDLIMKEGGGMKPGRK-LKAVIPGGSSAPVLTAEEVAKAN 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DY+ L +G+ LG+ AVIV+D S ++ + L+ FY HESCGQCTPCREGTGW+ +V+ Sbjct: 300 LDYESLAGLGTMLGSGAVIVIDDSQCMVDMLGVLTHFYAHESCGQCTPCREGTGWLNKVL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++G + ++IDLL +V+ N++G+TICAL DAAA P+ + FR E + + Sbjct: 360 HSILEGRGRLQDIDLLIKVADNMKGKTICALSDAAALPVLSFVTKFRDEFEFYVRE 415 >gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 624 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 164/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTN-LYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ + + S+++ ++ G + +K L + +D II E+ S LRGRGG Sbjct: 138 FYKKQTRLVLDHCGHIDSTSINEYLAIGGYSAFEKALFDMTQDEIITEISESNLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KWS + K + Y+V N DE +PG DR IM +PH ++EG +IA A GA Sbjct: 198 GFPAGRKWSQV-KRQNVEQKYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGLACGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG N G++ ++ ++ GAGA++CGE +A Sbjct: 257 SEGYIYVRAEYPMAVSRLKTAIKQASECGLLGENILGRGFNFNLHINRGAGAFVCGEGSA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ GA+WY G EN+ Sbjct: 317 LTASIEGKRGMPRVKPPRTVEHGLFDKPTVLNNVETYANVPLIINNGAAWYKAIGPENSP 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G++ +E M T E+I GG+RG D AV GG S C + Sbjct: 377 GTKAFALTGNIENTGLIEVPMGTTLREVIFDIGGGMRGNAD-FKAVQIGGPSGGC-LSTD 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D+D L+E G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT Sbjct: 435 DLDLPLDFDSLQEAGAMIGSGGMVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V+G + +I+LL E++ I +C LG AAA+P+ IKNFR E I Sbjct: 495 MLEILERIVEGKGKDGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHIR 554 Query: 418 QYHRCN 423 + RC Sbjct: 555 E-KRCP 559 >gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 640 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 153/423 (36%), Positives = 232/423 (54%), Gaps = 6/423 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI + + +++ D + RG + + K L + ++ EV + LRGRGG Sbjct: 131 FYKYQKRIVLGDNEHINPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + +D Y++VN DE +PG DR IM PH ++EG I +FAIGA Sbjct: 191 GFPAGKKWRTT-RDAADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ E+L AA+ + GLLG N G+D + VH GAGA++ GE +A Sbjct: 250 KEGYIYVRAEYPLAVENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ ++EG+ G+PR K A GL+ P+ +NNVE+ A VP I+ +GA W+ G E ++ Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSK 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G VN VE M T ++I K GG+R + AV GG S C+P Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +DYD L ++GS +G+ +I+MD T ++ F ESCG+C PCREG Sbjct: 428 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ R+ +G ++D L ++S + +CALG A P+ +K FR + I Sbjct: 488 LVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547 Query: 418 QYH 420 H Sbjct: 548 NKH 550 >gi|167970179|ref|ZP_02552456.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F) [Mycobacterium tuberculosis H37Ra] Length = 424 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 204/414 (49%), Positives = 268/414 (64%), Gaps = 11/414 (2%) Query: 19 SLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L+ + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ + Sbjct: 2 DLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTG 61 Query: 76 ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE + Sbjct: 62 AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPV 121 Query: 133 RESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 122 LRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 181 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 182 RPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRP 241 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ Sbjct: 242 GQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAA 298 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 299 GSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGS 358 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S +I G++ CALGD AA P+ IK+FR + + C F Sbjct: 359 HEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 411 >gi|311278759|ref|YP_003940990.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1] gi|308747954|gb|ADO47706.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1] Length = 445 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 169/407 (41%), Positives = 237/407 (58%), Gaps = 5/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + K L D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYQAKNGYAGARKALSGMAPDDIVSAVKDSGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I + Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQ 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G +G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPASSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQQ 426 >gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum ferrodiazotrophum] Length = 617 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 151/427 (35%), Positives = 236/427 (55%), Gaps = 7/427 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I ++ G + S+ D ++ + + K+L E D +I+E+ SGLRGRGG Sbjct: 131 FFRGQVKIVSSRCGLIDPSSIDDYIATDGYKALRKMLTEMTPDMVIDEMTKSGLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117 GF TG+KW + + Y+V NADE +PG DR I+ +PH+++EG + AS+AIG Sbjct: 191 GFYTGLKWKLTRQSQGE-EKYVVCNADEGDPGAFMDRSILEGDPHSVLEGMLAASYAIGN 249 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY R E+ + L+ A+D+ LG N G+ DI + GAGAY+CGEET Sbjct: 250 AKKGYIYCRAEYPLAIKRLRKAIDDARERNFLGDNILGTGFSFDITIKEGAGAYVCGEET 309 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL SL G++G P KPPFPA G++G PT +NNVE++ V I+ G WY+ +G E Sbjct: 310 ALLASLMGERGMPWPKPPFPAQKGVWGKPTVINNVETLGNVGHIILNGGDWYASYGSEKT 369 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK F+++G V +E ++ GG+ A GG S C+PA Sbjct: 370 KGTKTFALTGSVKNSGLIEVPAGTPLRSIVFDIGGGMLEKKIPFKAAQLGGPSGGCIPAS 429 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D++ + G+ +G+ +++MD ++ I+ F + ESCG+CTPCR G+ Sbjct: 430 GL-DTPVDFENVIAAGAIMGSGGIVIMDEASCIVDTAKFFLKFTQDESCGECTPCRVGSK 488 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ R+ +G Q+ ++D L +S ++ ++C LG AA P+ I+ FR E I Sbjct: 489 IMLEILTRITEGKGQEGDLDELIRLSMYVKSNSLCGLGAAAPNPVLSTIRYFREEFEAHI 548 Query: 417 DQYHRCN 423 H C Sbjct: 549 RDKH-CP 554 >gi|26248671|ref|NP_754711.1| NADH dehydrogenase I subunit F [Escherichia coli CFT073] gi|91211576|ref|YP_541562.1| NADH dehydrogenase I subunit F [Escherichia coli UTI89] gi|117624473|ref|YP_853386.1| NADH dehydrogenase I subunit F [Escherichia coli APEC O1] gi|170767289|ref|ZP_02901742.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii TW07627] gi|215487497|ref|YP_002329928.1| NADH dehydrogenase I subunit F [Escherichia coli O127:H6 str. E2348/69] gi|218559197|ref|YP_002392110.1| NADH dehydrogenase I subunit F [Escherichia coli S88] gi|218690444|ref|YP_002398656.1| NADH dehydrogenase I subunit F [Escherichia coli ED1a] gi|227887340|ref|ZP_04005145.1| NADH dehydrogenase I subunit F [Escherichia coli 83972] gi|237704758|ref|ZP_04535239.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|300983379|ref|ZP_07176563.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1] gi|301049037|ref|ZP_07196022.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1] gi|306814605|ref|ZP_07448767.1| NADH dehydrogenase I subunit F [Escherichia coli NC101] gi|312967582|ref|ZP_07781797.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75] gi|331647939|ref|ZP_08349031.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605] gi|26109076|gb|AAN81279.1|AE016763_238 NADH dehydrogenase I chain F [Escherichia coli CFT073] gi|91073150|gb|ABE08031.1| NADH dehydrogenase I chain F [Escherichia coli UTI89] gi|115513597|gb|ABJ01672.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli APEC O1] gi|170123623|gb|EDS92554.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii TW07627] gi|215265569|emb|CAS09972.1| NADH: ubiquinone oxidoreductase, chain F [Escherichia coli O127:H6 str. E2348/69] gi|218365966|emb|CAR03710.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli S88] gi|218428008|emb|CAR08929.2| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli ED1a] gi|222034040|emb|CAP76781.1| NadH-quinone oxidoreductase subunit F [Escherichia coli LF82] gi|226901124|gb|EEH87383.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|227835690|gb|EEJ46156.1| NADH dehydrogenase I subunit F [Escherichia coli 83972] gi|281179371|dbj|BAI55701.1| NADH dehydrogenase I chain F [Escherichia coli SE15] gi|284922272|emb|CBG35357.1| NADH-quinone oxidoreductase subunit F [Escherichia coli 042] gi|294492366|gb|ADE91122.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli IHE3034] gi|300299146|gb|EFJ55531.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1] gi|300408545|gb|EFJ92083.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1] gi|305851999|gb|EFM52451.1| NADH dehydrogenase I subunit F [Escherichia coli NC101] gi|307554346|gb|ADN47121.1| NADH dehydrogenase I chain F [Escherichia coli ABU 83972] gi|307626180|gb|ADN70484.1| NADH dehydrogenase I subunit F [Escherichia coli UM146] gi|312287779|gb|EFR15684.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75] gi|312946902|gb|ADR27729.1| NADH dehydrogenase I subunit F [Escherichia coli O83:H1 str. NRG 857C] gi|315285916|gb|EFU45354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 110-3] gi|315292243|gb|EFU51595.1| NADH oxidoreductase, F subunit [Escherichia coli MS 153-1] gi|315298117|gb|EFU57386.1| NADH oxidoreductase, F subunit [Escherichia coli MS 16-3] gi|320196151|gb|EFW70775.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli WV_060327] gi|323187991|gb|EFZ73286.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli RN587/1] gi|323944797|gb|EGB40863.1| NADH oxidoreductase [Escherichia coli H120] gi|323952077|gb|EGB47951.1| NADH oxidoreductase [Escherichia coli H252] gi|323956050|gb|EGB51803.1| NADH oxidoreductase [Escherichia coli H263] gi|324006666|gb|EGB75885.1| NADH oxidoreductase, F subunit [Escherichia coli MS 57-2] gi|330912109|gb|EGH40619.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli AA86] gi|331043663|gb|EGI15801.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605] Length = 445 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 171/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G +G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|294669098|ref|ZP_06734184.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309090|gb|EFE50333.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 426 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 201/408 (49%), Positives = 261/408 (63%), Gaps = 6/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + +D +I EVK SGLRGRGGAGF +G+KWSFMP+ Sbjct: 12 DCWTLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSF 71 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+R PH LIEG +I +A+GA + Y+ GE Sbjct: 72 PG-EKYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGY 130 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+ E +G LG N G+D ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 131 QRFEAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 190 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GL+G PTT+NN E+ A VP I+R G ++ G N GTKLFS+SGHV P Sbjct: 191 PPFPASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPG 250 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F +L+ G G L AVIPGGSS P +P M MDYD + + G Sbjct: 251 NYEVPLGTPFADLLSMAGG--VRGGKKLKAVIPGGSSSPVIPGDMMMTLTMDYDAISKAG 308 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V G + Sbjct: 309 SMLGSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIVNGQGRM 368 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++LL + N+ GRTICAL DAA +P++G +K++R I+ Sbjct: 369 EDLELLESIGNNMAGRTICALADAAVFPVRGFMKHYRDEFVHYIEHGK 416 >gi|329935992|ref|ZP_08285792.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus M045] gi|329304470|gb|EGG48348.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus M045] Length = 462 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 196/411 (47%), Positives = 255/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 41 ESWTLDVYRRHEGYEGLRKALAMSPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 99 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 100 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 159 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E YA+G LG + G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 160 LHEAVREAYAAGYLGKDILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 219 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL+ G W+ G E + G L+S+SGHV P Sbjct: 220 FPAVAGLYACPTVVNNVESIASVPAILKNGKDWFRSMGSEKSPGFTLYSLSGHVTSPGQY 279 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 280 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 336 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 337 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSD 396 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G+ CALGD AA PI +K FR EE I C F Sbjct: 397 LDKLNDIADNINGKAFCALGDGAASPIFSSLKYFRAEYEEHITGRG-CPFD 446 >gi|195342920|ref|XP_002038046.1| GM17964 [Drosophila sechellia] gi|194132896|gb|EDW54464.1| GM17964 [Drosophila sechellia] Length = 435 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 243/420 (57%), Positives = 292/420 (69%), Gaps = 27/420 (6%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 39 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 98 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 99 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 158 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181 +IY+RGEF E ++Q A+ E Y + GYD D+ +H GAGAYICGEETAL+ES Sbjct: 159 YIYIRGEFYNEASNMQLAIAEAYQA---------GYDFDVFMHRGAGAYICGEETALIES 209 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G+PRLKPPFPA+VG++ E++A V G Sbjct: 210 LEGKQGKPRLKPPFPADVGVFDAQPQYQ-CETVA-VHHHWPSGG---------------- 251 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 V PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 252 VGSPASVAPPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV 311 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG GWM ++ Sbjct: 312 IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKI 371 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 M R VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ + + Sbjct: 372 MTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHAK 431 >gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] Length = 592 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 150/423 (35%), Positives = 234/423 (55%), Gaps = 6/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61 + R+ N + +++ D + + +K + E ++++I + SGLRGRGG GF Sbjct: 110 KQERRVLKNCGVIDPENIDDFLRNDGYKAAEKAISEMTKEFVIKNIIDSGLRGRGGGGFP 169 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K ++ Y+V NADE +PG DR I+ +PH++IEG +IA +AIGA Sbjct: 170 TGIKWDIASKNHAE-QKYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKG 228 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ L A+ G LG N ++ DI + GAGA++CGEETAL+ Sbjct: 229 LVYIRAEYPLAISRLDKAIVSARKRGYLGKNLFGTDFEFDIEIKFGAGAFVCGEETALIH 288 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+P KPP+PA G + PT VNNVE++ VP I+ G W+ G E + GTK Sbjct: 289 SMEGKRGEPTSKPPYPAEKGFWDMPTVVNNVETLVNVPRIILNGVEWFREVGTEKSPGTK 348 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F++SG +N VE M I+ E+I + GI+GG AV GG S CL + Sbjct: 349 VFALSGKINNVGLVEVPMGISLREIIFEIGEGIKGG-KKFKAVQTGGPSGGCLNEEDL-D 406 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L G+ +G+ ++VMD ++ F ESCG+CTPCR G + Sbjct: 407 TPIDFDSLASKGAIMGSGGMVVMDEDDCMVSVAKFFLEFTLDESCGKCTPCRIGNTRLYE 466 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R+ KG + ++ LL E+S+ I+ ++C LG +A P+ + F + + + Sbjct: 467 ILDRITKGKGKLEDLALLKELSECIKATSLCGLGQTSANPVLSTLNKFYNEYIDHVVE-K 525 Query: 421 RCN 423 RC Sbjct: 526 RCT 528 >gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] Length = 627 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 243/426 (57%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q+R+ G + + D ++ + + KIL E + +I EV SGLRGRGG Sbjct: 141 FYKRQERVTLRYCGRIDPDDIYDYIAHRGYRAISKILQEMNPEEVIKEVNDSGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWSF Y++ N DE +PG DR +M PH+++EG +IA +AIGA Sbjct: 201 GFPTGRKWSFAASQPGP-KKYIICNGDEGDPGAFMDRSVMEGNPHSVLEGMMIAGYAIGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +IY R E+ + ++ A+ + A GLLG+N ++ I + GAGA++CGEETA Sbjct: 260 NEGYIYARAEYPLAIKRMRKAIADAEAHGLLGNNILGSDFNFKINIKEGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+GCPT +NNVE++A + I+ GA + +G + Sbjct: 320 LIASIEGERGMPRPRPPFPAVKGLWGCPTIINNVETLANLRYIINNGAGEFKKYGTAGSS 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G V VE M +T E++ GG+R +V GG S CL + Sbjct: 380 GTKTFALAGQVQNTGLVEVPMGVTLREVVFDIGGGLR-DGKKYKSVQIGGPSGGCLTEDK 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L ++G+ +G+ ++VM T +++ F ++ESCG+C PCREGT Sbjct: 439 L-DLPLDYDELMKVGAMIGSGGLVVMGDDTCMVETAKFFMGFVQNESCGKCVPCREGTKQ 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G + ++DLL E+++N++ ++C LG A P+ ++ FR + Sbjct: 498 LLALLTKITEGKGTEADLDLLEELAQNVKDGSLCGLGKTAPNPVLTTLRYFRDEYIAHVR 557 Query: 418 QYHRCN 423 +C Sbjct: 558 D-KKCP 562 >gi|200387672|ref|ZP_03214284.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604770|gb|EDZ03315.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 445 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 169/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I + Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQ 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|152971212|ref|YP_001336321.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579298|ref|YP_002237328.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342] gi|238895801|ref|YP_002920537.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae NTUH-K2044] gi|262043324|ref|ZP_06016453.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934258|ref|YP_003438317.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22] gi|290508461|ref|ZP_06547832.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55] gi|330003560|ref|ZP_08304675.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3] gi|150956061|gb|ABR78091.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568356|gb|ACI10132.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342] gi|238548119|dbj|BAH64470.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039348|gb|EEW40490.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888987|gb|ADC57305.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22] gi|289777855|gb|EFD85852.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55] gi|328536900|gb|EGF63199.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3] Length = 445 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 168/407 (41%), Positives = 237/407 (58%), Gaps = 5/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I + Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQ 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE++ VP IL G WY + GTKL SG V P Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT+ + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTSLAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQQ 426 >gi|150388475|ref|YP_001318524.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149948337|gb|ABR46865.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 547 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 238/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + +++ + ++ + + + + E + +I +KASGLRGRGG Sbjct: 111 FYKKQLRLALRNCGFINPENIKEYIAEDGYLALGRAVKEMTPEAVIEVIKASGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW +D +++ NADE +PG DR I+ +PH+++E IA +AIGA Sbjct: 171 GFPTGRKWELTHGNKND-LKFIICNADEGDPGAFMDRSILEGDPHSILEAMAIAGYAIGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY+R E+ + L A+++ GLLG ++ DI + +GAGA++CGEETA Sbjct: 230 EKGYIYIRAEYPLAIQRLNIAIEQAREYGLLGERIFDSDFNFDIELKYGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EG +G+P KPPFPA GL+ PT VNNVE++A +P IL +G+ W+S G ++++ Sbjct: 290 LLNSIEGGRGEPNAKPPFPAESGLWDKPTCVNNVETLANIPQILLKGSEWFSRIGTKDSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN VE M IT E+I GGIR AV GG S C+P Sbjct: 350 GTKVFALAGKVNNVGLVEVPMGITLREIIFDIGGGIRDN-KKFKAVQTGGPSGGCIPEAY 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY L+E+GS +G+ +IVMD ++ F + ESCG+CTPCR G Sbjct: 409 L-DTHVDYQTLQEVGSIMGSGGMIVMDEDDCMVNITKFYLEFAEDESCGKCTPCRIGNKR 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ R+ G + ++ L + + I+ ++C LG ++ PI ++ F + + Sbjct: 468 LHEILIRITNGKGTREDLHNLKSLGEIIKDSSLCGLGQSSPNPILSTLEYFEDEYKAHVM 527 Query: 418 QYHRCN 423 C Sbjct: 528 D-KTCP 532 >gi|170727208|ref|YP_001761234.1| NADH-quinone oxidoreductase subunit F [Shewanella woodyi ATCC 51908] gi|169812555|gb|ACA87139.1| NADH-quinone oxidoreductase, F subunit [Shewanella woodyi ATCC 51908] Length = 454 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 165/413 (39%), Positives = 234/413 (56%), Gaps = 6/413 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCS 74 S+ + G + K L + ++ +++ +K S LRGRGGAGF TG+KWSF+P+ + Sbjct: 19 NCWSIEQYQNHGGYQGFRKSLTQSQEQLLDTLKESNLRGRGGAGFPTGLKWSFVPRGDDA 78 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL+VNADE EPGT KDR +M PH +IEG +I + +GA ++++RG++ E Sbjct: 79 PSPRYLIVNADEMEPGTFKDRMLMEKTPHQIIEGLLIGAQTLGASIGYVFLRGDYYLAEE 138 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ EC + LLG N G D DI +H AG YICGEETAL+ S+EGK+ PR KP Sbjct: 139 RMTKALQECRDANLLGKNILGSGLDFDIHLHTSAGRYICGEETALINSMEGKRANPRAKP 198 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFP GL+G PT VNNVE+ +P I+ G W+ G ++ GTK+F +SG V P Sbjct: 199 PFPQVAGLWGKPTIVNNVETFCNLPHIINFGPIWFKELGLNDDAGTKIFGVSGRVKRPGL 258 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M E+IE+H GG+ G+ L +PGG S L + MDYD + + GS Sbjct: 259 WELPMGTPIREIIEQHAGGMCDGY-TLKGFLPGGGSTDFLVTEHL-DIPMDYDTIGKQGS 316 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +GT +I++D + + L F+ ESCG CTPCR+G W ++E++ +G + Sbjct: 317 RMGTGTIIILDDRYCPVAMVLNLIKFFAQESCGWCTPCRDGLPWAQVLLEKIERGEGEPE 376 Query: 374 EIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +I L E+ + G T CAL A P+Q +K FR E I Q C F Sbjct: 377 DITQLEELCRFAAPGNTFCALAPGAVEPLQSALKYFREDFEAHISQAC-CPFH 428 >gi|225024119|ref|ZP_03713311.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC 23834] gi|224943144|gb|EEG24353.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC 23834] Length = 431 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 201/408 (49%), Positives = 261/408 (63%), Gaps = 6/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 +L + + RG + + KIL + +D +I EVK SGLRGRGGAGF +G+KWSFMP+ Sbjct: 19 DCWTLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSF 78 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 Y+V N DE EPGT KDRDI+R PH LIEG +I +A+GA + Y+ GE Sbjct: 79 PG-EKYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGY 137 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +AA+ E +G LG N G+D ++ HHG GAYICGEETALLESLEGKKGQPR K Sbjct: 138 QRFEAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA+ GL+G PTT+NN E+ A VP I+R G ++ G N GTKLFS+SGHV P Sbjct: 198 PPFPASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPG 257 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + F +L+ G G L AVIPGGSS P +P M MDYD + + G Sbjct: 258 NYEVPLGTPFADLLAMAGG--VRGGKKLKAVIPGGSSSPVIPGDMMMTLTMDYDAIAKAG 315 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVIVMD ++KA+ RLS FY ESCGQCTPCREGTGW+ R++ R+V G + Sbjct: 316 SMLGSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIVHRIVNGQGRM 375 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++LL + N+ GRTICAL DAA +P++G +K++R I+ Sbjct: 376 EDLELLESIGNNMAGRTICALADAAVFPVRGFMKHYRDEFVHYIEHGK 423 >gi|156933126|ref|YP_001437042.1| NADH dehydrogenase I subunit F [Cronobacter sakazakii ATCC BAA-894] gi|156531380|gb|ABU76206.1| hypothetical protein ESA_00936 [Cronobacter sakazakii ATCC BAA-894] Length = 445 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 172/406 (42%), Positives = 240/406 (59%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E Sbjct: 82 MNIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 RLRRAIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE++ VP IL G WY G ++GTKL SG V P Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E++ GG+R G A PGG+ L + M++ + + GS Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425 >gi|320199872|gb|EFW74461.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli EC4100B] Length = 445 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 169/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRNKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 624 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 234/412 (56%), Gaps = 5/412 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++ + S+ D M RG + + K+L++G D +I +K SGLRGRGGAGF TG+KW Sbjct: 147 IMEDIGKCECDSIDDYMGRGGYLSFIKVLKEGNPDNVIKTIKDSGLRGRGGAGFPTGVKW 206 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 K ++V N DE +PG +R ++ +PH ++EG +IA++ IGA + Y+R Sbjct: 207 EIT-KNSRGDKKFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIR 265 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E + A+++ GL+G N G+ DI + GAGA++CGEETALL S+EGK Sbjct: 266 AEYPVAVEMFRKAIEDAKRLGLIGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGK 325 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PP+PA GL+G PT +NNVE+ A VP I+R GA Y G N+ GTK+FS++ Sbjct: 326 RGVPRPRPPYPAQAGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVT 385 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +E T +++ + CGG+ G + AV GG S CL + +DY Sbjct: 386 GPVKLTGIIEVEFGTTLRQIVYEICGGLTGDNE-FKAVQIGGPSGACLSEAFL-DLPLDY 443 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D LK G+ +G+ ++V+ + +++ F K ESCG+C PCREG R++ER Sbjct: 444 DSLKSAGAMVGSGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQAYRILERF 503 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +G +++ L ++ I+ + C LG A PI ++ FR I+ Sbjct: 504 TQGKGTYEDLENLEFLAGLIKTASACGLGQTAPNPILSTLRLFRDEYIAHIE 555 >gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] Length = 626 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 148/427 (34%), Positives = 237/427 (55%), Gaps = 8/427 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ + + +S+ + ++ + V+K L + + +++E+ S LRGRGG Sbjct: 139 FYARQTRVALEHCGHINAESIEEYLAADGYTAVEKALFDMTPEEVVDEISESYLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + ++ Y+V N DE +PG DR +M +PH +IEG +IA A A Sbjct: 199 GFQTGKKWCQVLQQA-EKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGIATKA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + LQ A+D+ GLLG N G+D D+ + GAGA++CGE +A Sbjct: 258 SYGYIYVRAEYPLAVKRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ VP+I+ +G+ WY G E N Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNY 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296 GTK F+++G+V + +E M E+I GG++ G AV GG S CL Sbjct: 378 GTKAFALTGNVKHTGLIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGE 435 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +D+D LK++G+ +G+ ++VM+ + +++ F ++ESCG+C PCREGT Sbjct: 436 NHLELPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTK 495 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ +V+G +D+L E+S I +C LG +A+ P++ +K FR + Sbjct: 496 RMLEILTDIVEGRGTLEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFREEYIAHV 555 Query: 417 DQYHRCN 423 +C Sbjct: 556 VD-KKCP 561 >gi|197264028|ref|ZP_03164102.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242283|gb|EDY24903.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 445 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 169/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G +Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGESQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|283786352|ref|YP_003366217.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium ICC168] gi|282949806|emb|CBG89429.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium ICC168] Length = 445 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 172/407 (42%), Positives = 239/407 (58%), Gaps = 5/407 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 Q L + S+ ++ K L D I+N+VK SGL+GRGGAGFSTG+KWS MPK Sbjct: 21 RQPVWLDEYRSKNGYEGARKALTALSPDEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDE 80 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 S YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 81 SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAA 140 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E+L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR K Sbjct: 141 ENLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSK 200 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 201 PPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPG 260 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E T E++E + GG+R G A PGG+ L + M+++ + + G Sbjct: 261 LWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAG 318 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 319 SRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQP 378 Query: 373 REIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 379 GDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIRQ 425 >gi|297625185|ref|YP_003706619.1| NADH-quinone oxidoreductase subunit F [Truepera radiovictrix DSM 17093] gi|297166365|gb|ADI16076.1| NADH-quinone oxidoreductase, F subunit [Truepera radiovictrix DSM 17093] Length = 447 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 191/415 (46%), Positives = 260/415 (62%), Gaps = 8/415 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 ++ ++ +L+ G ++ + K L + +EVK SGLRGRGGAGF TG+KW Sbjct: 23 LYKHVGVEGAHTLAYYRQHGGYEALKKALTGMKPAEVTDEVKRSGLRGRGGAGFPTGVKW 82 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP R ++V NADESEPG+ KDR IM +PH L+EG IA +AIGA +Y+R Sbjct: 83 SFMP-PVDGRQRFIVCNADESEPGSFKDRYIMEDDPHQLLEGMAIAGYAIGATKGVLYIR 141 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ R E L+ A+ E A GLLG + G+D D+I+H GAGAYICGEETAL+ S EG Sbjct: 142 GEYYRAYERLREAIAEARAEGLLGRDLFGSGFDFDVILHRGAGAYICGEETALMNSFEGL 201 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 + PRLKPPFPA G+YG PTT+NNVES+A V I+ RGA W++ G E+++GTKL+ +S Sbjct: 202 RANPRLKPPFPAQAGVYGLPTTINNVESLASVVHIISRGADWFAAMGTEDSKGTKLYQLS 261 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMD 304 G P E M TF ELI GG+ + + A+IPGGSS P LP + MD Sbjct: 262 GPAVRPGVYELPMGATFRELIFDLGGGVT---EPVKALIPGGSSTPMLPFTDDVLDTPMD 318 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMMRVME 363 Y + + GS LGT VI++ R I+ A W L FY HESCG+CTPCREG +GWM ++ + Sbjct: 319 YGAIVKKGSMLGTGGVILIPRDKCIVNATWNLVRFYAHESCGKCTPCREGISGWMTKMYQ 378 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +LV G+ + +++L+ +++NI+G+ C L DA P+ I +FR E I Sbjct: 379 KLVAGLGEAGDLELIEMMAENIKGKAFCPLADACLGPVLSSIAHFRDEYEYLIAH 433 >gi|260598701|ref|YP_003211272.1| NADH dehydrogenase I subunit F [Cronobacter turicensis z3032] gi|260217878|emb|CBA32426.1| NADH-quinone oxidoreductase subunit F [Cronobacter turicensis z3032] Length = 445 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 172/406 (42%), Positives = 240/406 (59%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E Sbjct: 82 MNIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 RLRRAIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE++ VP IL G WY G ++GTKL SG V P Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E++ GG+R G A PGG+ L + M++ + + GS Sbjct: 262 WELPFGTTAREILEEYAGGMRDGL-TFKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425 >gi|327191026|gb|EGE58080.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli CNPAF512] Length = 421 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 194/413 (46%), Positives = 257/413 (62%), Gaps = 6/413 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 G LS + G + + K+L E D +I+ VK S LRGRGGAGF TGMKW F+PK Sbjct: 13 RDGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKWGFVPKRT 72 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +P YL NADE EPGT KDR IM +PH LIEG ++++AIGA A++Y+RGE++ Sbjct: 73 -GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAI 131 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L+ A+ E +A G LG ++ + +H GAGAYICGEETA+LESLEGK+ QPRLK Sbjct: 132 RRLEQAIAEAHARGYLGKRILGSDFNFAVHIHCGAGAYICGEETAMLESLEGKRAQPRLK 191 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLY PT +NNVE++A VP I+ RGA W+ G G + + G KL+ +SG V P Sbjct: 192 PPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLYCLSGQVRKPG 251 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E M I +L+E H GG+ + AVIPGG S P +P + MD+D L G Sbjct: 252 LYELPMGIALRDLVENHAGGV-LPGRRIKAVIPGGVSAPVIPEHGLE-VRMDFDSLAAAG 309 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG W+++V+ R+ G Sbjct: 310 SMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVLRRIEAGDGAP 369 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +++ L + K I G T CALGD AA ++ + +FR I Q HRC F Sbjct: 370 GDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHI-QDHRCPFH 421 >gi|94985021|ref|YP_604385.1| NADH-quinone oxidoreductase, F subunit [Deinococcus geothermalis DSM 11300] gi|94555302|gb|ABF45216.1| NADH dehydrogenase subunit F [Deinococcus geothermalis DSM 11300] Length = 446 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 193/414 (46%), Positives = 255/414 (61%), Gaps = 11/414 (2%) Query: 6 DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 R LY G +L + G + V + D +I EVK SGLRGRGGAGF+ Sbjct: 17 PRFAPTLYAHVGQPGSWTLDFYLRHGGYQGVRRAFALRPDAVIEEVKKSGLRGRGGAGFA 76 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP + HY++ NADESEPG+ KDR ++ +PH LIEG +I +A+ A Sbjct: 77 TGLKWSFMPLND-GKQHYIICNADESEPGSFKDRYLLSEDPHQLIEGMLIGGYAMRASVG 135 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ + AA+ E A+GLLG N G+D D+ VH GAGAYICGEETAL+ Sbjct: 136 YIYIRGEYVHAAGRVWAAIREARAAGLLGKNVLGSGFDFDLQVHRGAGAYICGEETALMN 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PRLKPPFPA GLYG PTT+NNVE+ IL+ GA W++ G E ++G K Sbjct: 196 SLEGLRANPRLKPPFPAAAGLYGMPTTINNVETFCAATQILKYGADWHARMGTEKSKGMK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299 LF ISG V P E + TF EL+ GG +++ A+IPGGSS P LP + Sbjct: 256 LFQISGPVRRPGVYELPLGTTFRELVYDWAGGP---LEDIKAIIPGGSSCPMLPWDDRTL 312 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358 MDY+ + GS LGT V ++ ++ I+ W L FY HESCG+CTPCREG +GWM Sbjct: 313 DTPMDYESVAAAGSMLGTGGVTLIPKADCIVNVTWNLVRFYAHESCGKCTPCREGISGWM 372 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +R+ E+LV+G Q ++ L+ ++S NI GR+ CAL DA P+ IK FR Sbjct: 373 VRMYEKLVRGHGQPGDVQLILDMSDNIGGRSFCALADACLGPVLSSIKLFREEY 426 >gi|320354167|ref|YP_004195506.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Desulfobulbus propionicus DSM 2032] gi|320122669|gb|ADW18215.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Desulfobulbus propionicus DSM 2032] Length = 538 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 151/422 (35%), Positives = 241/422 (57%), Gaps = 6/422 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q + L G + +S+ D ++ G + V + L E +I V+ SGLRGRGGA Sbjct: 112 FFKRQHKNVLALSGRIDPESVDDYLAAGGYLAVVQALTEMRPSDVIRRVQESGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K + YL+ NADE +PG DR I+ PH ++EG +IA++A+GA Sbjct: 172 GYPTGLKWATVAKATGE-KKYLICNADEGDPGAFMDRSILESTPHAVLEGMIIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + L+ A+ E LG + D+DI + GAGA++CGEETA Sbjct: 231 TSGYIYVRAEYPLAVKRLKLAIREAERLNFLGHAVCGSSLDLDIQLRLGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EGK+G PR +PP+PA GL+G PT +NNVE+ A VP I+ G + G E ++ Sbjct: 291 LIQSVEGKRGIPRPRPPYPAEQGLWGRPTLINNVETYANVPPIIAHGPEKLAALGTEQSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M ++ E++ GGI GG L AV GG S C+PA Sbjct: 351 GTKVFALTGKIRNSGLIEVPMGMSLREIVFDIGGGIPGG-HALKAVQTGGPSGGCIPAEH 409 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + ++ L+ +GS +G+ +IV+D +T+++ + F ESCGQCTPCR GT Sbjct: 410 L-DTPVSFESLRALGSIMGSGGMIVIDETTNMVDIVKYFMEFSMDESCGQCTPCRVGTAQ 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ + A ++ L + ++ ++C LG +A P+ ++ FR +RI Sbjct: 469 IHHLLTLFQQSRATLLDLAKLEALCDLVKNTSLCGLGQSAPNPVLSTLRYFRQEYLDRIV 528 Query: 418 QY 419 + Sbjct: 529 AH 530 >gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocystis sp. PCC 6803] gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocystis sp. PCC 6803] gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocystis sp. PCC 6803] Length = 533 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 148/411 (36%), Positives = 244/411 (59%), Gaps = 5/411 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 N + +S+ + ++ G ++ + K++ E + +I E+ SGLRGRGG G+ TG+KW+ Sbjct: 125 LENSGRIDPESIDEYIALGGYEQLHKVVYEMTPEEVIVEMNKSGLRGRGGGGYPTGLKWA 184 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + K+ + Y++ NADE +PG DR ++ +PH ++EG IA++A+GA+ +IYVR Sbjct: 185 TVAKMP-GQQKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAAYAVGANHGYIYVRA 243 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ + LQ A+ + GL+G+ D I + GAGA++CGEETAL+ S+EGK+ Sbjct: 244 EYPLAIQRLQKAIQQAKRYGLMGTQIFDSPIDFKIDIRVGAGAFVCGEETALIASVEGKR 303 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR +PP+PA GL+ PT +NNVE+ A V I+R G WY G E ++GTK+F+++G Sbjct: 304 GTPRPRPPYPAQSGLWQSPTLINNVETYANVVPIIREGGDWYGSIGTEKSKGTKVFALTG 363 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V +E M T +++E+ GG+ G + AV GG S C+PA ++ ++YD Sbjct: 364 KVENAGLIEVPMGTTVRQVVEEMGGGVPNGG-QVKAVQTGGPSGGCIPADKL-DTPIEYD 421 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L +G+ +G+ +IVMD ST+++ F K ESCG+C PCR GT + ++ R + Sbjct: 422 TLLALGTMMGSGGMIVMDESTNMVDVAQFYMDFCKSESCGKCIPCRAGTVQLYDLLTRFL 481 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +G A + ++ L + ++ ++C LG +A P+ ++ FR EE + Sbjct: 482 EGEATQEDLIKLENLCHMVKETSLCGLGMSAPNPVISTLRYFRHEYEELLK 532 >gi|16130219|ref|NP_416787.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. MG1655] gi|82777692|ref|YP_404041.1| NADH dehydrogenase I subunit F [Shigella dysenteriae Sd197] gi|89109102|ref|AP_002882.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. W3110] gi|110642488|ref|YP_670218.1| NADH dehydrogenase I subunit F [Escherichia coli 536] gi|170081901|ref|YP_001731221.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. DH10B] gi|170680196|ref|YP_001744482.1| NADH dehydrogenase I subunit F [Escherichia coli SMS-3-5] gi|188495817|ref|ZP_03003087.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638] gi|191170009|ref|ZP_03031563.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11] gi|193062282|ref|ZP_03043377.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22] gi|194427216|ref|ZP_03059767.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171] gi|194436158|ref|ZP_03068260.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1] gi|218700758|ref|YP_002408387.1| NADH dehydrogenase I subunit F [Escherichia coli IAI39] gi|238901459|ref|YP_002927255.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952] gi|253772794|ref|YP_003035625.1| NADH dehydrogenase I subunit F [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162293|ref|YP_003045401.1| NADH dehydrogenase I subunit F [Escherichia coli B str. REL606] gi|256017560|ref|ZP_05431425.1| NADH dehydrogenase I subunit F [Shigella sp. D9] gi|256022032|ref|ZP_05435897.1| NADH dehydrogenase I subunit F [Escherichia sp. 4_1_40B] gi|260844871|ref|YP_003222649.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2 str. 12009] gi|260856328|ref|YP_003230219.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11 str. 11368] gi|260869007|ref|YP_003235409.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H- str. 11128] gi|293410644|ref|ZP_06654220.1| NADH oxidoreductase [Escherichia coli B354] gi|297519443|ref|ZP_06937829.1| NADH dehydrogenase I subunit F [Escherichia coli OP50] gi|300931363|ref|ZP_07146694.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1] gi|300936849|ref|ZP_07151738.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1] gi|300956456|ref|ZP_07168745.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1] gi|300981074|ref|ZP_07175346.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1] gi|301026954|ref|ZP_07190347.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1] gi|301647619|ref|ZP_07247415.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1] gi|307138948|ref|ZP_07498304.1| NADH dehydrogenase I subunit F [Escherichia coli H736] gi|309785012|ref|ZP_07679645.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617] gi|312973457|ref|ZP_07787629.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70] gi|331642922|ref|ZP_08344057.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736] gi|331653726|ref|ZP_08354727.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718] gi|332278570|ref|ZP_08390983.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9] gi|2506953|sp|P31979|NUOF_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F; AltName: Full=NUO6 gi|1788620|gb|AAC75344.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. MG1655] gi|1799645|dbj|BAA16113.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K12 substr. W3110] gi|81241840|gb|ABB62550.1| NADH dehydrogenase I chain F [Shigella dysenteriae Sd197] gi|110344080|gb|ABG70317.1| NADH dehydrogenase I chain F [Escherichia coli 536] gi|169889736|gb|ACB03443.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12 substr. DH10B] gi|170517914|gb|ACB16092.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli SMS-3-5] gi|188491016|gb|EDU66119.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638] gi|190909525|gb|EDV69110.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11] gi|192931948|gb|EDV84547.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22] gi|194414837|gb|EDX31108.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171] gi|194424886|gb|EDX40871.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1] gi|218370744|emb|CAR18557.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI39] gi|238861870|gb|ACR63868.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952] gi|242377917|emb|CAQ32686.1| NADH:ubiquinone oxidoreductase, chain F, subunit of soluble NADH dehydrogenase fragment and NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323838|gb|ACT28440.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974194|gb|ACT39865.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli B str. REL606] gi|253978361|gb|ACT44031.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BL21(DE3)] gi|257754977|dbj|BAI26479.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11 str. 11368] gi|257760018|dbj|BAI31515.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2 str. 12009] gi|257765363|dbj|BAI36858.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H- str. 11128] gi|260448623|gb|ACX39045.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli DH1] gi|291471112|gb|EFF13596.1| NADH oxidoreductase [Escherichia coli B354] gi|299879501|gb|EFI87712.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1] gi|300307687|gb|EFJ62207.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1] gi|300316726|gb|EFJ66510.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1] gi|300458036|gb|EFK21529.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1] gi|300460825|gb|EFK24318.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1] gi|301074246|gb|EFK89052.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1] gi|308927382|gb|EFP72856.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617] gi|309702596|emb|CBJ01924.1| NADH-quinone oxidoreductase subunit F [Escherichia coli ETEC H10407] gi|310332052|gb|EFP99287.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70] gi|315136918|dbj|BAJ44077.1| NADH dehydrogenase I subunit F [Escherichia coli DH1] gi|315615553|gb|EFU96185.1| NADH oxidoreductase, F subunit [Escherichia coli 3431] gi|323156434|gb|EFZ42589.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli EPECa14] gi|323161618|gb|EFZ47503.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli E128010] gi|323176791|gb|EFZ62381.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1180] gi|323936574|gb|EGB32861.1| NADH oxidoreductase [Escherichia coli E1520] gi|323941019|gb|EGB37206.1| NADH oxidoreductase [Escherichia coli E482] gi|323961467|gb|EGB57077.1| NADH oxidoreductase [Escherichia coli H489] gi|323973011|gb|EGB68205.1| NADH oxidoreductase [Escherichia coli TA007] gi|324013176|gb|EGB82395.1| NADH oxidoreductase, F subunit [Escherichia coli MS 60-1] gi|331039720|gb|EGI11940.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736] gi|331048575|gb|EGI20651.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718] gi|332100922|gb|EGJ04268.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9] Length = 445 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G +G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|271962160|ref|YP_003336356.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] gi|270505335|gb|ACZ83613.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021] Length = 428 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 197/411 (47%), Positives = 260/411 (63%), Gaps = 9/411 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L G + K L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 16 NSFTLEGY---GDYSAARKALGMDPDAVIQAVKDSGLRGRGGAGFPTGMKWGFIPQ-GDG 71 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD +M PH+L+EG +I S+AI A+ AFIYVRGE + Sbjct: 72 KPHYLVVNADESEPGTCKDIPLMMANPHSLVEGIIITSYAIRANHAFIYVRGEVLHVIRR 131 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQAAV E Y GLLG + G+D++++VH GAGAYICGEETALL+SLEG +GQPRLKPP Sbjct: 132 LQAAVAEAYDKGLLGKDLFGSGFDLELVVHSGAGAYICGEETALLDSLEGYRGQPRLKPP 191 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVES+A VP+I+ GA W++G G E ++G +FS+SGHV P Sbjct: 192 FPAVAGLYASPTVVNNVESVASVPSIISNGAEWFAGMGTEKSKGFGIFSLSGHVTRPGQY 251 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL++ G + PGGSS P + +D++ + GS Sbjct: 252 EAPLGITLRELLDMAGG--IREGHQIKFWTPGGSSTPIFTDEHL-DVPLDFESVGAKGSM 308 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V++RL KG + + Sbjct: 309 LGTRALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLKRLEKGQGTEED 368 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + + +++ NI GR+ CALGD A PI +K FR + + C F Sbjct: 369 LTTITDIADNILGRSFCALGDGATSPIHSSVKYFRDEYLKHF-EIGGCPFD 418 >gi|194289164|ref|YP_002005071.1| NADH:ubiquinone oxidoreductase complex i, chain f [Cupriavidus taiwanensis LMG 19424] gi|193222999|emb|CAQ69004.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus taiwanensis LMG 19424] Length = 431 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 208/421 (49%), Positives = 273/421 (64%), Gaps = 8/421 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 Q I L G L D + RG + + +IL + + +I +VKASGLRGRGGAGF T Sbjct: 10 QPLILAGLDG-NNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMP+ YLV N DE EPGT KDRDI+R+ PH LIEG I ++A+G + Sbjct: 69 GLKWSFMPRTFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+ GE E + + A++E A+G LG N G+ + HHG GAYICGEETALLES Sbjct: 128 NYIHGEIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L G Y G+ NN GTK+ Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKMGKPNNGGTKI 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FSISG V P E + F +L+E G G + AVIPGGSS P +P M + Sbjct: 248 FSISGDVERPGNYEIPLGTPFAKLLELAGGM--RGGKRIKAVIPGGSSAPVVPGDLMMAS 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ R+ Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRM 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ E + ++ + Sbjct: 366 VNRIEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQ 424 Query: 422 C 422 C Sbjct: 425 C 425 >gi|298246355|ref|ZP_06970161.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM 44963] gi|297553836|gb|EFH87701.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM 44963] Length = 443 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 193/409 (47%), Positives = 257/409 (62%), Gaps = 7/409 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 G+ +L G ++ + K L+ D I+ E+K SGLRGRGGAGF TGMKWSF+ K Sbjct: 16 GID--TLEVYRQNGGYEALAKALKSEPDQIVEEIKKSGLRGRGGAGFPTGMKWSFLAKN- 72 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 D+P YL N+DESEPGT KDR +M PH L+EG +I S+A AFIY+RGE Sbjct: 73 -DKPRYLCCNSDESEPGTFKDRMLMERNPHLLVEGVLITSYACRVKTAFIYIRGELPYAA 131 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + +Q AVDE Y +GL+GSN Y +D+IVH GAGAYICGEE+AL+ESLEG++G PRLK Sbjct: 132 DQVQRAVDEAYEAGLIGSNILGSDYSIDVIVHRGAGAYICGEESALMESLEGRRGYPRLK 191 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA VGLYG PT +NN E++ VP I+ +G +Y+ FG E ++GT++F +SGHV P Sbjct: 192 PPFPAVVGLYGGPTVINNCETLCTVPAIIEQGGEYYASFGTEKSKGTRIFGLSGHVKKPG 251 Query: 253 TVEESMSITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E ++ I L+ GG + AVIPGGSS L ++ MDY+ + Sbjct: 252 NYEVALGIPLRTLLYDEQYGGGILNDRQVKAVIPGGSSTFFLGPDKL-DIPMDYESVAAA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LG+ VIV++ T I+ I R FY+ ESCG+CTPCREGT W+ ++ERL G + Sbjct: 311 GSMLGSGGVIVINDETCIVGTIARAVEFYRDESCGKCTPCREGTYWLTELLERLEHGHGK 370 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++IDLL + NI G++ C LGDAA I ++ FR E + H Sbjct: 371 MKDIDLLTSICGNISGKSFCPLGDAATSLITSGVRMFREEFEYHVTHGH 419 >gi|320178743|gb|EFW53706.1| NADH-ubiquinone oxidoreductase chain F [Shigella boydii ATCC 9905] Length = 445 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGALKALTRLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|330817787|ref|YP_004361492.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia gladioli BSR3] gi|327370180|gb|AEA61536.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia gladioli BSR3] Length = 439 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 202/416 (48%), Positives = 269/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I NL G L D ++RG + + +I+E+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILANLNGEN-WRLEDYVARGGYKQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH++IEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHSVIEGMAIGAYAMGITAGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + A++E A+G LG+N + + HHG GAY+CGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEEALEEARAAGYLGNNILGSEFSFQLHAHHGYGAYVCGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK++S+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNAETFAAVPFLLTVGPQAYLEIGKPNNGGTKIYSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G L AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEVPLGTPFAALLELAGGM--RGGRKLKAVIPGGSSAPVIPGEMMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV++R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLMRLSYFYHEESCGQCTPCREGTGWLYRVVKR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G + ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IENGEGRVEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|16765651|ref|NP_461266.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412779|ref|YP_149854.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161502531|ref|YP_001569643.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612948|ref|YP_001586913.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549677|ref|ZP_02343436.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994672|ref|ZP_02575763.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229693|ref|ZP_02654751.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237341|ref|ZP_02662399.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242442|ref|ZP_02667374.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261660|ref|ZP_02683633.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465973|ref|ZP_02699843.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817946|ref|ZP_02829946.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443680|ref|YP_002041584.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451801|ref|YP_002046377.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469483|ref|ZP_03075467.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736167|ref|YP_002115393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249657|ref|YP_002147282.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361713|ref|YP_002141349.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242534|ref|YP_002216394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204929246|ref|ZP_03220389.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353439|ref|YP_002227240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857742|ref|YP_002244393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583190|ref|YP_002636988.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912397|ref|ZP_04656234.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141542|sp|P33901|NUOF_SALTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|16420865|gb|AAL21225.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127036|gb|AAV76542.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160863878|gb|ABX20501.1| hypothetical protein SARI_00575 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362312|gb|ABX66080.1| hypothetical protein SPAB_00654 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402343|gb|ACF62565.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410105|gb|ACF70324.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455847|gb|EDX44686.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711669|gb|ACF90890.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631228|gb|EDX49788.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093189|emb|CAR58633.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213360|gb|ACH50757.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289714|gb|EDY29077.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937050|gb|ACH74383.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204321790|gb|EDZ06989.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273220|emb|CAR38183.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325480|gb|EDZ13319.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327504|gb|EDZ14268.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335912|gb|EDZ22676.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338467|gb|EDZ25231.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344967|gb|EDZ31731.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349424|gb|EDZ36055.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709545|emb|CAR33890.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467717|gb|ACN45547.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247530|emb|CBG25357.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994419|gb|ACY89304.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158882|emb|CBW18395.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913315|dbj|BAJ37289.1| NADH dehydrogenase subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086758|emb|CBY96530.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322617070|gb|EFY13976.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617624|gb|EFY14523.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624746|gb|EFY21575.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630295|gb|EFY27065.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634476|gb|EFY31209.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639186|gb|EFY35878.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640049|gb|EFY36716.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645730|gb|EFY42254.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651506|gb|EFY47881.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656065|gb|EFY52364.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659418|gb|EFY55665.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665878|gb|EFY62061.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669882|gb|EFY66023.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673868|gb|EFY69965.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678626|gb|EFY74682.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683578|gb|EFY79592.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687654|gb|EFY83624.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130655|gb|ADX18085.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193512|gb|EFZ78717.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198417|gb|EFZ83519.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201931|gb|EFZ86993.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208531|gb|EFZ93470.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209760|gb|EFZ94684.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218296|gb|EGA03006.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222947|gb|EGA07296.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227382|gb|EGA11547.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232291|gb|EGA16394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235675|gb|EGA19759.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241164|gb|EGA25200.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244906|gb|EGA28908.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250025|gb|EGA33919.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251637|gb|EGA35505.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254948|gb|EGA38739.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260328|gb|EGA43947.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268096|gb|EGA51573.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270811|gb|EGA54249.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624145|gb|EGE30490.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628531|gb|EGE34874.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989257|gb|AEF08240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 445 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 169/406 (41%), Positives = 237/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|194433349|ref|ZP_03065629.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012] gi|194418443|gb|EDX34532.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012] gi|332088414|gb|EGI93532.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 5216-82] gi|332090604|gb|EGI95700.1| NADH oxidoreductase (quinone), F subunit [Shigella dysenteriae 155-74] Length = 445 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGALKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|255533958|ref|YP_003094330.1| NADH-quinone oxidoreductase subunit F [Pedobacter heparinus DSM 2366] gi|255346942|gb|ACU06268.1| NADH-quinone oxidoreductase, F subunit [Pedobacter heparinus DSM 2366] Length = 454 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 208/426 (48%), Positives = 265/426 (62%), Gaps = 18/426 (4%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ G+ +L +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ Sbjct: 11 NVPGIN--TLDVYRQKGGYRAVEKALKTLTPDDVVEEVKKSGLRGRGGAGFPTGMKWSFL 68 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 K P YLV NADESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE Sbjct: 69 AK-PDGVPRYLVCNADESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEM 127 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L+ A+ E +G LG N GYD+++ V G GAYICGEETALLESLEGK+G Sbjct: 128 MPQIRILEKAIAEAKNAGFLGKNILGSGYDLELYVQPGGGAYICGEETALLESLEGKRGN 187 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR+KPPFPA GLYGCPT VNNVESIA V I+ G Y+ G + GTKL S SG++ Sbjct: 188 PRIKPPFPAIAGLYGCPTVVNNVESIAAVVPIVNDGGEEYAKIGIGRSTGTKLISASGNL 247 Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA----- 301 P E + + +E I + CGGI L A + GGSSVP LPA Sbjct: 248 VRPGVYEIELGLPVEEFIYSDEWCGGIA-NGKRLKATVAGGSSVPVLPANLTLKLANGEP 306 Query: 302 -IMDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +M Y+ L G+ +G+ I D I++ W S FY HESCGQC+PCREGTG Sbjct: 307 RLMSYESLSEGGFATGTMMGSGGFIAFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTG 366 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 WM +V+ RL G + +IDLL +VSK IEG TIC LGDAAAWP+ I++FR E + Sbjct: 367 WMEKVLHRLEYGHGKMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHV 426 Query: 417 DQYHRC 422 + +C Sbjct: 427 KEPVKC 432 >gi|325105662|ref|YP_004275316.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145] gi|324974510|gb|ADY53494.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145] Length = 454 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 200/410 (48%), Positives = 261/410 (63%), Gaps = 16/410 (3%) Query: 23 SMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ K P YLV Sbjct: 21 YKEKGGYRAVEKALKTMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLV 79 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 N DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + + L+ A+ Sbjct: 80 CNGDESEPGTFKDRFLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILEKAIA 139 Query: 142 ECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 E +G LG N +D+++ V G GAYICGEETALLESLEGK+G PR+KPPFPA G Sbjct: 140 EAKEAGYLGKNILGSDFDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAG 199 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 LY CPT VNNVESIA I+ G Y+ G + GTKL S SG++N P E + + Sbjct: 200 LYNCPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNINKPGVYEIELGV 259 Query: 261 TFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLK--- 309 + ++ I ++CGGI G L AV+ GGSSVP LPA + +M Y+ L Sbjct: 260 SVEDFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLILNLVNGDKRLMTYESLSDGG 318 Query: 310 -EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 G+ LG+ IVMD +++ W S FY HESCGQC+PCREGTGWM +++ ++ G Sbjct: 319 FATGTMLGSGGFIVMDEDQCVVRNTWNFSRFYNHESCGQCSPCREGTGWMTKILHKIETG 378 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +IDLL +VSK IEG TIC LGDAAAWP+ +++FR E I++ Sbjct: 379 KGSYSDIDLLVDVSKQIEGNTICPLGDAAAWPVASAVRHFRDEFEWHINE 428 >gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] Length = 626 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 161/426 (37%), Positives = 237/426 (55%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + +QD I + + S+ D ++RG ++++ K L + II VKASGLRGRGG Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + K D ++V N DE +PG +R ++ +PH ++EG +IA +A+GA Sbjct: 201 GFPTGLKWEYTGKARGD-LKFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ + A+++ GLLG N G+ D+ V GAGA++CGEETA Sbjct: 260 QKGYAYIRAEYPFAVRMFKKAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR KPPFPA GL G PT +NNVE+ A VP +LR G Y G EN+ Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLLGKPTLINNVETYANVPRVLRDGVEEYRKRGTENSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T E+I CGG + AV GG S CL Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLREIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK+ + +G+ ++V+ + T +++ F K ESCG+C PCREGT Sbjct: 439 L-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ G A +++ L +SK I+ ++C LG A PI +K FR I+ Sbjct: 498 AYNILEKFTHGKATYEDLETLEHLSKTIKTASLCGLGKTAPNPILSTLKLFRDEYIAHIE 557 Query: 418 QYHRCN 423 C Sbjct: 558 --GECP 561 >gi|300948572|ref|ZP_07162665.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1] gi|300451920|gb|EFK15540.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1] Length = 445 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 171/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I+SFA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISSFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G +G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|146312470|ref|YP_001177544.1| NADH dehydrogenase I subunit F [Enterobacter sp. 638] gi|145319346|gb|ABP61493.1| NADH dehydrogenase subunit F [Enterobacter sp. 638] Length = 445 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 171/407 (42%), Positives = 238/407 (58%), Gaps = 5/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYQSKNGYEGARKALAGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE++ VP IL G WY + GTKL SG V P Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQQ 426 >gi|156741350|ref|YP_001431479.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] gi|156232678|gb|ABU57461.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] Length = 532 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 153/421 (36%), Positives = 249/421 (59%), Gaps = 7/421 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q RI N + + + ++ G + + +L + +I+ V SGLRGRGGA Sbjct: 111 FFTLQKRIVLENSGIIDPERIESYIAAGGYQALYCVLHDMTPAEVIDVVTRSGLRGRGGA 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K D Y+V NADE +PG DR I+ +PH ++EG IA++A+GA Sbjct: 171 GYPTGLKWATVAKSHGD-RKYVVCNADEGDPGAFMDRSIIESDPHKILEGMAIAAYAVGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + LQ A+ + GLLG+ G+ I + GAGA++CGEETA Sbjct: 230 DQGYVYVRAEYPLAIQRLQRAIAQARRLGLLGAQIFDAGFTFRIDIRVGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A +P I+R GA W++ G E+++ Sbjct: 290 LMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPPIIRNGAEWFAAIGAEHSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + + +E M +T +++E+ GG+ G + AV GG S C+PA Sbjct: 350 GTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPEG--RVKAVQTGGPSGGCIPAA- 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L+ +GS +G+ ++VMD +T+++ F K ESCG+C PCR GT Sbjct: 407 LLDTPVDYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEFCKDESCGKCIPCRAGTAQ 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ + G A ++ L ++ ++ ++C LG +A P+ +K FR E + Sbjct: 467 MLHMLNLIRSGQATAADLARLEQLCIMVKETSLCGLGQSAPNPVLSTMKYFREEYEAFVR 526 Query: 418 Q 418 Sbjct: 527 D 527 >gi|296103965|ref|YP_003614111.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058424|gb|ADF63162.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295098077|emb|CBK87167.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 445 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 172/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L D I+N VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYQSKNGYAGARKALGGMAPDDIVNAVKESGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE++ VP IL G WY G + GTKL SG V P Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ + +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRAIERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425 >gi|308232349|ref|ZP_07664059.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu001] gi|308371245|ref|ZP_07667116.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu003] gi|308372437|ref|ZP_07667377.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu004] gi|308380584|ref|ZP_07490464.2| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu011] gi|308214179|gb|EFO73578.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu001] gi|308329370|gb|EFP18221.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu003] gi|308333199|gb|EFP22050.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu004] gi|308361023|gb|EFP49874.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu011] Length = 422 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 203/413 (49%), Positives = 268/413 (64%), Gaps = 11/413 (2%) Query: 20 LSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD- 75 ++ + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ + Sbjct: 1 MATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 60 Query: 76 --RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE + Sbjct: 61 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 120 Query: 134 ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+ Sbjct: 121 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 180 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 181 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 240 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ G Sbjct: 241 QYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAAG 297 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 298 SMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSH 357 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S +I G++ CALGD AA P+ IK+FR + + C F Sbjct: 358 EDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 409 >gi|157144785|ref|YP_001452104.1| NADH dehydrogenase I subunit F [Citrobacter koseri ATCC BAA-895] gi|157081990|gb|ABV11668.1| hypothetical protein CKO_00512 [Citrobacter koseri ATCC BAA-895] Length = 445 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 595 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 231/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + + + K L E +I+E+K SGLRGRGG Sbjct: 110 FYKKQMRIALRNCGLINPENIEEYLGNRGYMALGKCLNEMNPQSVIDEMKLSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F +D Y+V NADE +PG DR I+ +PH++IE I ++ GA Sbjct: 170 GFPTGLKWQFAANNSAD-QKYVVCNADEGDPGAFMDRSILEGDPHSVIEAMAICGYSTGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+D+ GLLG N G+D DI + +GAGA++CGEETA Sbjct: 229 SKGLVYIRAEYPLAINRLKKAMDDAREYGLLGKNILGSGFDFDIEIKYGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G+P KPPFPA G +G PT VNNVE+ A +P I+ G W+ G E + Sbjct: 289 LIHSMEGERGEPTSKPPFPAESGYWGKPTNVNNVETFANIPEIILNGGEWFKSIGTEKSS 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M T E+I + GGI AV GG S CL Sbjct: 349 GTKVFALAGKINNVGLVEVPMGTTLREVIFEIGGGI-SNGKKFKAVQTGGPSGGCLTERD 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 408 L-DTPIDFDSLLAKGSMMGSGGMIVMDEDNCMVAVSKFYLEFTVEESCGKCTPCRIGNTR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++++ KG +++LL E+S+ I+ ++C LG A PI + F + Sbjct: 467 LYEILDKITKGNGTLEDLELLKELSETIKDTSLCGLGQTAPNPILSTLDQFWDEYVAHVV 526 Query: 418 QYHRCN 423 RC Sbjct: 527 D-KRCP 531 >gi|326202423|ref|ZP_08192292.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325987541|gb|EGD48368.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 575 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 146/421 (34%), Positives = 234/421 (55%), Gaps = 6/421 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + + +S+ ++ G + + K L D +++ VK SGLRGRGG Sbjct: 138 FYKKQLRVALRNCGLINPEDISEYIALGGYQALGKALTQMSADEVVDTVKKSGLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K D+ +++ NADE +PG DR I+ +PH++IE I ++AIGA Sbjct: 198 GFPTGLKWEITRKQQ-DKEKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E L A+++ GLLG ++ DI + +GAGA++CGEETA Sbjct: 257 DKGIVYIRAEYPLAIERLTKALEQARELGLLGKGIFGTDFNFDITLKYGAGAFVCGEETA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S EGK+G+P KPP+PA G +G PT VNNVE+ A +P I+ +GA W++ G E ++ Sbjct: 317 LINSCEGKRGEPNYKPPYPAEEGYWGHPTCVNNVETFANIPVIMTKGAEWFASMGTEKSK 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M IT E+I GGI AV GG S + Sbjct: 377 GTKVFALAGKINNVGLVEVPMGITLREIIFDIGGGIP-HGKKFKAVQTGGPSGGVITEKN 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYDGL ++G+ +G+ +IVMD +++ F E+CG+C P R GT Sbjct: 436 L-DTPIDYDGLLKIGTMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ ++ G A ++D L +++ ++ ++C L A P+ +K+F + + Sbjct: 495 LFEMLHKIASGEATMDDLDALKQLAYMVKDSSLCGLCQTAPNPVVSTMKHFWNEYLDLVK 554 Query: 418 Q 418 Sbjct: 555 D 555 >gi|325954439|ref|YP_004238099.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922] gi|323437057|gb|ADX67521.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922] Length = 453 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 208/431 (48%), Positives = 276/431 (64%), Gaps = 15/431 (3%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64 Q + N+ + G + N +K + + I+ EVK SGLRGRGGAGF TGM Sbjct: 3 QKLLLKNIDVPGIRHYQVYRENGGYSNAEKAFKMKEEEILEEVKTSGLRGRGGAGFPTGM 62 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWSF+ K P +LVVNADESEPGT KDR +M + PH LIEG +I+SF +G++ +FIY Sbjct: 63 KWSFLAK-PEGVPRHLVVNADESEPGTFKDRYLMEYIPHLLIEGILISSFCLGSNTSFIY 121 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 +RGE+ E L+ A+DE A+G LG N G+D+++ V GAGAYICGEETALLESLE Sbjct: 122 IRGEYAWIAEILEQAIDEAKAAGWLGKNIQGTGFDLEVYVQRGAGAYICGEETALLESLE 181 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G PR+KPPFPA GL+G PT VNNVE+IA V I+ G YS G + GTKL S Sbjct: 182 GKRGNPRIKPPFPAVKGLWGRPTVVNNVETIASVVPIIEIGGDAYSKIGVGRSTGTKLIS 241 Query: 244 ISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 G++N P E M+IT +E I ++CGGI G L A IPGGSSVP LPA + Sbjct: 242 ACGNINKPGVYEIDMTITVEEFIYSDEYCGGIANG-KRLKACIPGGSSVPILPANLLLRT 300 Query: 302 I------MDYDGLKE----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 M+Y+ L E G+ +G+ IV+D DI+ + L+ FY+HESCGQC+PC Sbjct: 301 TNGQPRYMNYESLAEGGFQSGTMMGSGGFIVLDEDQDIVYHTYTLARFYRHESCGQCSPC 360 Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411 REGTGWM ++++R+ +G + +I+LL+++ + IEG TIC LGDAAAWP+ I++FR Sbjct: 361 REGTGWMEKLLKRIDEGKGKISDIELLWDIQRKIEGNTICPLGDAAAWPVASAIRHFRDE 420 Query: 412 IEERIDQYHRC 422 E I+ C Sbjct: 421 FEWHINHPEEC 431 >gi|312131899|ref|YP_003999239.1| NADH dehydrogenase subunit f [Leadbetterella byssophila DSM 17132] gi|311908445|gb|ADQ18886.1| NADH dehydrogenase subunit F [Leadbetterella byssophila DSM 17132] Length = 446 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 206/427 (48%), Positives = 265/427 (62%), Gaps = 17/427 (3%) Query: 7 RIFTNLYGLQG-KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGM 64 +I T + G + G + V+K L+ D ++ EVK SG+RGRGGAGF GM Sbjct: 4 KILTEHIHIPGINTFEVYRKHGGYSAVEKALKTMSPDEVVEEVKKSGIRGRGGAGFPMGM 63 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWSF+ K P YLV N DESEPGT KD +M++ PH LIEG +++SFA+GA+ +FIY Sbjct: 64 KWSFLAK-PEGVPRYLVCNGDESEPGTFKDHYLMKNIPHLLIEGMIVSSFALGANKSFIY 122 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 VRGE + L+ A++E A+G LG N GYD++++V G GAYICGEETALLESLE Sbjct: 123 VRGELMYVIRILEKAIEEAKAAGFLGKNILGTGYDLELVVQPGGGAYICGEETALLESLE 182 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G PR KPPFPA GLY PT VNNVESIA P I+ G Y+ G + GTKL S Sbjct: 183 GKRGNPRNKPPFPAVKGLYESPTVVNNVESIANTPWIVNNGGDAYASIGIGRSTGTKLIS 242 Query: 244 ISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 SG+V P E + + +E I ++ GGIR L AV+ GGSSVP LPA + Sbjct: 243 ASGNVKKPGVYEIELGVPVEEFIYSDEYLGGIR-DGHYLKAVVAGGSSVPILPANLILKT 301 Query: 302 ------IMDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 +M Y+ L G+ LG+ IVMD + I++ W S FY HESCGQC+PC Sbjct: 302 AGGEQRLMTYESLSDGGFATGTMLGSGGFIVMDETNCIVRNTWNFSRFYHHESCGQCSPC 361 Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411 REGTGW+ +V+ R+ G +R+IDLL +V+K IEG TIC LGDAAAWP+ I++FR Sbjct: 362 REGTGWLEKVLYRIEHGQGNERDIDLLVDVAKRIEGNTICPLGDAAAWPVGSAIRHFRDE 421 Query: 412 IEERIDQ 418 E I Sbjct: 422 FEWHIKN 428 >gi|256831784|ref|YP_003160511.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM 20603] gi|256685315|gb|ACV08208.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM 20603] Length = 448 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 200/403 (49%), Positives = 250/403 (62%), Gaps = 5/403 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q ++ + G ++ + K L I+ EVK SGLRGRGGAGF TGMKW F+P Sbjct: 18 QSWTMDTYLDHGGYEGLKKALTMDPAAIVQEVKDSGLRGRGGAGFPTGMKWGFLPPDDGG 77 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YLVVNADESEPGTCKD +M P LIEG +I SFAIG AFIYVRGE + Sbjct: 78 -PRYLVVNADESEPGTCKDIPLMMATPQFLIEGVIITSFAIGCRHAFIYVRGEVVHVYRR 136 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV+E Y G LG N GY +D+ VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 137 LLKAVEEAYDRGFLGDNILGSGYSLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 196 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVES+A VP I+ RGASW++ G E + G LFS+SGHV P Sbjct: 197 FPAVAGLYARPTVVNNVESVASVPQIIARGASWFTSLGTEKSAGHGLFSLSGHVERPGQY 256 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL++ G G L PGGSS P A + +DY+ + GS Sbjct: 257 EAPLGITLRELLDMAGG--IRGGRQLKFWTPGGSSTPIFTADHL-DTPLDYESVGAAGSM 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ R+ G + + Sbjct: 314 LGTRALQIFDDTTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRIEAGQGTQGD 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 I+ L ++ NI GR CALGD A I I+ FR E + Sbjct: 374 IEKLLDLCDNILGRAFCALGDGATSCITSAIQYFRDEFEAGMH 416 >gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] Length = 586 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 158/428 (36%), Positives = 240/428 (56%), Gaps = 7/428 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 M+ Q R+ N + + + D ++ + +K + E + IIN VK +GL GRGGA Sbjct: 100 MIAKQKRVVLQNCGIIDPERIEDYLAVDGYKAAEKAIKEMSPEDIINTVKVAGLAGRGGA 159 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T KW+ K D YLV NADE +PG DR ++ +PH LIEG +IA+ AIGA Sbjct: 160 GFPTWFKWNEAHKAKGD-VKYLVCNADEGDPGAFMDRSVLESDPHALIEGMIIAAKAIGA 218 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +YVR E+ + L+ A+ + G LG N + D+ + GAGA++CGEETA Sbjct: 219 AQGVVYVRAEYPLAIKRLENAIGQAREKGYLGENIFGSAFSFDLRIKAGAGAFVCGEETA 278 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PRLKPPFPA G + PT +NNVE+ A VP I R Y G EN++ Sbjct: 279 LIASLEGERGMPRLKPPFPAQKGYWAKPTNINNVETYANVPWIFRNSGETYGQLGNENSK 338 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + VE M +T ++I GGI+ AV GG S C+PA Sbjct: 339 GTKVFALTGKIKKGGLVEIPMGLTLRDVIYDIGGGIKND-KAFKAVQMGGPSGGCVPAE- 396 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++DY + + G+ +G+ ++VMD +T ++ F + ESCG+C CR GT Sbjct: 397 LVDTVIDYPSITKTGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCNYCRIGTMR 456 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G + +I+LL E+ ++ ++C LG A P+ ++ FR E+ I Sbjct: 457 MLEILTRITEGEGRDGDIELLEELCLKVKEGSMCGLGQTAPNPVLTTLRYFRNEYEDHIY 516 Query: 418 QYHRCNFQ 425 + H+C Sbjct: 517 K-HKCTAH 523 >gi|261820796|ref|YP_003258902.1| NADH dehydrogenase I subunit F [Pectobacterium wasabiae WPP163] gi|261604809|gb|ACX87295.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium wasabiae WPP163] Length = 449 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 173/409 (42%), Positives = 244/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L D S+ + K L +D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDDYRSKNGYAAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M EPH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 NLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GTA + +D +++ L F+ ESCG CTPCR+G W ++++ L G Q Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429 >gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 634 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 158/430 (36%), Positives = 240/430 (55%), Gaps = 10/430 (2%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGAG 59 Q R+ ++ + + ++RG + K LE + + SGLRGRGG G Sbjct: 143 FYNRQKRVVLANCRVEPSCVREYIARGGYFGARKAILEMKPEEVCQTAIDSGLRGRGGGG 202 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW F +D Y++ N DE +PG DR +M PH++IEG +IA+ AIGA Sbjct: 203 FPTGLKWKFTLASQND-KKYVICNGDEGDPGAFMDRSVMEGNPHSVIEGMMIAARAIGAD 261 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++YVR E+ E ++AAV + +GLLG + + + V GAGA++CGEETAL Sbjct: 262 EGYVYVRAEYPLAVERMRAAVKDAEEAGLLGDHLFGSDFSFKVTVMEGAGAFVCGEETAL 321 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EGK+G PR KPPFPA GL+G PT +NNVE++A VP I G Y G E + G Sbjct: 322 IASIEGKRGMPRPKPPFPAQSGLWGKPTVINNVETLASVPGIFLNGPEQYKAVGTEKSPG 381 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPCL 293 TK F+++GHV +E T E+I GG+ ++ AV GG S CL Sbjct: 382 TKTFALTGHVANTGLIEVPFGTTLREIIYNIGGGVTNNKGEVTTEDFKAVQIGGPSGGCL 441 Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353 M +D+D LK G+ +G+ ++VM++ T I+K F ++ESCG+C PCRE Sbjct: 442 TPD-MLDLPLDFDSLKSAGAMVGSGGLVVMNKETCIVKIARFFMQFTQNESCGKCVPCRE 500 Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 GT M+ +++ +++G A ++ ++LL E +K ++ ++CALG A P+ ++ FR E Sbjct: 501 GTKQMLAMLDDIIEGRADRKTLELLEETAKAVQLGSLCALGKTAPNPVLSTLRFFREEYE 560 Query: 414 ERIDQYHRCN 423 + + C Sbjct: 561 AHVFK-KICP 569 >gi|62180894|ref|YP_217311.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128527|gb|AAX66230.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715373|gb|EFZ06944.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 445 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 168/402 (41%), Positives = 236/402 (58%), Gaps = 5/402 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 26 LDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I L+ Sbjct: 86 YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 145 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 AIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G++G PT VNNVE++ VP IL G WY + + GTKL SG V P E Sbjct: 206 TSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELP 265 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E++E + GG+R G A PGG+ L + M+++ + + GS LGT Sbjct: 266 FGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I+ Sbjct: 324 ALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|171058190|ref|YP_001790539.1| NADH-quinone oxidoreductase subunit F [Leptothrix cholodnii SP-6] gi|170775635|gb|ACB33774.1| NADH-quinone oxidoreductase, F subunit [Leptothrix cholodnii SP-6] Length = 452 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 211/422 (50%), Positives = 269/422 (63%), Gaps = 12/422 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGAGFS 61 I+ L G L+D +RG + + KIL D +I EVK SGLRGRGGAGF Sbjct: 30 IYAGLNGKN-WRLADYEARGGYQALRKILGADGGEGMTADQVIAEVKGSGLRGRGGAGFP 88 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ YLV N+DE EPGTCKDRDI+R+ PH +IEG +IA++A+G Sbjct: 89 TGLKWSFMPRALP-VQKYLVCNSDEGEPGTCKDRDILRYNPHIVIEGMIIAAYAMGITVG 147 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE E + A++E A+G LG+ + + HG GAYICGEETALLE Sbjct: 148 YNYIHGEIFDAYERFEEALEEARAAGYLGNQILGSRHTFQLHAFHGFGAYICGEETALLE 207 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 208 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECGKPNNGGTK 267 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G V P E M F L+E G L AVIPGGSS P LPA M Sbjct: 268 IFSMVGDVERPGNYEIPMGTPFSTLLELAG--GVKGGKKLKAVIPGGSSSPVLPADVMMA 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD + ++K++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 326 CTMDYDSISKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYSHESCGQCTPCREGTGWLWR 385 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++R+ G + ++ LL V++NI GRTICALGDAAA P++ ++K+FR I ++ Sbjct: 386 IVDRIEHGHGRAEDLALLDNVAENIMGRTICALGDAAAMPVRAMLKHFRHEFVHHI-EHK 444 Query: 421 RC 422 C Sbjct: 445 TC 446 >gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 624 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 241/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R +F + SL D + G + ++K+L D +++E+K SGLRGRGG Sbjct: 137 FYKKQLRLVFGTNGYIDPTSLDDYIQAGGYQALNKVLSSMSPDEVVDEIKISGLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF+TG KW + + Y++ N DE +PG DR +M PH++IEG VIA++A+GA Sbjct: 197 GFATGAKWEITREAPGE-LKYVICNCDEGDPGAFMDRSLMEGNPHSIIEGMVIAAYAVGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY+R E+ ++ + A+ + GLLG N G+D I + G GA++CGE TA Sbjct: 256 RQGYIYIRNEYPVALKNSEIAIKKAEEKGLLGKNILGTGFDFSIKISRGGGAFVCGESTA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG+ G+PR + GL+ PT +NNVE++A +P I+ +GA W+ G G N++ Sbjct: 316 LMASIEGRTGEPRANYIHTSEKGLWERPTLLNNVETLANIPLIINKGAEWFYGIGTGNSK 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V+ +E M IT E+ GG G AV GG S CLP + Sbjct: 376 GTKIFSLVGKVHNTGLIEVPMGITLREI-IYEIGGGIPGGKKFKAVQTGGPSGGCLPEEK 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ A+IVMD ++ F + ESCG+C PCREG Sbjct: 435 L-DLSVDFDELSRAGSMMGSGAMIVMDEDNCMVDIARYFLSFLEEESCGKCVPCREGLKR 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++++R+++G Q +I+LL ++S+++ +C LG +A P+ I++F+ I Sbjct: 494 MRQILDRIIEGKGQDEDIELLIDLSESLTMGALCGLGGSAGNPVLSTIRHFKDEYVAHIQ 553 Query: 418 QYHRCN 423 + RC Sbjct: 554 E-KRCP 558 >gi|123476595|ref|XP_001321469.1| hydrogenase chain [Trichomonas vaginalis G3] gi|55793663|gb|AAV65812.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Trichomonas vaginalis] gi|121904296|gb|EAY09246.1| hydrogenase chain, putative [Trichomonas vaginalis G3] Length = 429 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 226/413 (54%), Positives = 304/413 (73%), Gaps = 2/413 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +DRIF NL+G +G L+ + RG W+ +++++KG+++I+NEVK S +RGRGGAGF Sbjct: 13 FLDPKDRIFPNLFGDEGADLASAQKRGDWNQTEELIKKGKEFILNEVKKSEIRGRGGAGF 72 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG KWSF+PK S PHYL +NADE EPGTCKDR I+ +EPH L+EG ++AS+ I AH Sbjct: 73 STGQKWSFVPK-PSGIPHYLCINADEGEPGTCKDRQILTNEPHKLVEGALLASYTIHAHT 131 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A++YVRGEF E LQ A+DE YA+GL+G N+K G+D D+ +H GAGAY+CGEETALL Sbjct: 132 AYVYVRGEFRHEIACLQKAIDEAYAAGLIGKNNKFGWDFDMYIHSGAGAYVCGEETALLN 191 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK G+PR KPP+PA GL+ PT +NNVE+I+ VPTI +RG W+S G + ++GTK Sbjct: 192 SIEGKAGRPRFKPPYPAAKGLFQKPTIINNVETISSVPTICKRGGDWFSSIGIKGSKGTK 251 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +++ISGHVN+PC VEE+M I +LI K+ GG+RGGWDNLL +IPGG S P L Q Sbjct: 252 IYAISGHVNHPCVVEEAMGIPIKDLINKYAGGVRGGWDNLLCLIPGGLSCPILTKEQCET 311 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A+M Y+ L MGS LGT A+IVMD+ST++ +A R+S FY HESCGQC PCREGT + Sbjct: 312 AVMGYNELSAMGSALGTGAIIVMDKSTNLYEAFRRVSHFYMHESCGQCGPCREGTAKLSD 371 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 +M++ +G A K ++ +L +V+ ICAL A++ PI+GL+K FRP +E Sbjct: 372 IMDKFAEGKATKHDLLMLKKVAYQ-TSNCICALAGASSDPIKGLLKQFRPELE 423 >gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit [uncultured archaeon GZfos26D6] Length = 654 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 152/427 (35%), Positives = 248/427 (58%), Gaps = 9/427 (2%) Query: 1 MLTDQDRIFT--NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57 Q R+ NL+ + +++D ++ G + + K+L + ++ EVK++ LRGRGG Sbjct: 131 FYKYQTRVVFSGNLW-VDPANINDYIALGGYQALAKVLHGMTPEEVLEEVKSANLRGRGG 189 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF G KW + + +P Y++VN DE +PG DR IM PH ++EG +IA++AIG Sbjct: 190 GGFPAGRKWEST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIG 248 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 + F+YVR E+ ++L A+++ G LG + G++ D+ VH GAGA++ GE + Sbjct: 249 SQQGFVYVRQEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESS 308 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ ++EGK G+PR K ++ G++G P+ +NNVE+ A+VP I+++GA W++ G E + Sbjct: 309 ALMNAIEGKVGEPRPKYIHTSDSGVWGKPSNLNNVETYAIVPLIIKKGADWFNSIGTEGS 368 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+FS+ G VN VE M T ++ GG G AV GG S +P Sbjct: 369 KGTKIFSLVGKVNNTGLVEVPMGTTLRDI-IYKIGGGIPGGKRFKAVQTGGPSGGVIPER 427 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + + +D+D L ++GS +G+ +IVMD T I+ F +ESCG+C PCREG Sbjct: 428 YL-DSPVDFDELTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLK 486 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M +++ +V G ++ +I+LL+E++ ++ ++CALG AA P+ I+ F E I Sbjct: 487 RMREILDDIVAGKGREGDIELLHEIADVMKSASLCALGTTAANPVLSTIRYFGDEYEAHI 546 Query: 417 DQYHRCN 423 + RC Sbjct: 547 KE-RRCP 552 >gi|311744397|ref|ZP_07718199.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM 15272] gi|311312363|gb|EFQ82278.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM 15272] Length = 436 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 205/412 (49%), Positives = 269/412 (65%), Gaps = 6/412 (1%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + + + +L+ ++G +D + + + II VK SGLRGRGGAGF TGMKW Sbjct: 8 VLSRNWADDRAWTLAAYEAQGGYDGLRRAVTMEPGEIIELVKDSGLRGRGGAGFPTGMKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P + P YLVVNADESEPGTCKD +M PHTL+EG +IAS AIGA AFIYVR Sbjct: 68 SFIP-ADNPNPRYLVVNADESEPGTCKDIPLMMASPHTLVEGVIIASRAIGAETAFIYVR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + LQAAV E Y +G LG++ + G +D++VH GAGAYICGEETALL+SLEG+ Sbjct: 127 GEVLHVVRRLQAAVREAYEAGYLGADVAGSGTRLDVVVHAGAGAYICGEETALLDSLEGR 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLY PT +NNVESIA VP IL G W+ G E ++G L+S+S Sbjct: 187 RGQPRLRPPFPAVAGLYASPTVINNVESIASVPAILAHGVDWFGSMGTEKSKGFTLYSLS 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + IT E++E GG+R G + L PGGSS P L A + +DY Sbjct: 247 GHVKRPGQYEAPLGITLREILE-LGGGMRDGSE-LKFWTPGGSSTPILTAEHL-DVPLDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G+ GS LGT A+ V D++T +++ + R + FYKHESCG+CTPCREGT W+++ + RL Sbjct: 304 EGVGAAGSMLGTKALQVFDQTTSVVRCVLRWTEFYKHESCGKCTPCREGTWWLVQTLRRL 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 G Q +I+LL ++ NI GR+ CALGD A PI I+ FR + + Sbjct: 364 DSGQGQAGDIELLLDLCDNILGRSFCALGDGATSPITSAIQYFRSEFDAGMH 415 >gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain, NADH-quinone oxidoreductase chain F related [uncultured archaeon] Length = 658 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 149/427 (34%), Positives = 242/427 (56%), Gaps = 9/427 (2%) Query: 1 MLTDQDRIFT--NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57 Q R+ NL+ + ++ D ++ G + + K+L + ++ E+ ++ LRGRGG Sbjct: 131 FYKYQTRVVFSGNLW-VDPANIDDYIALGGYQALAKVLHRMTPEEVLEELNSANLRGRGG 189 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF G KW + + +P Y++VN DE +PG DR IM PH ++EG +IA++AIG Sbjct: 190 GGFPAGRKWEST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIG 248 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 + F+YVR E+ ++L A+++ G LG + G++ D+ VH GAGA++ GE + Sbjct: 249 SQQGFVYVRQEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESS 308 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ ++EGK G+PR K ++ G++ P+ +NNVE+ A VP I+++GA W++ G E + Sbjct: 309 ALMNAIEGKVGEPRPKYVHTSDSGIWDKPSNLNNVETYATVPLIIKKGADWFNSIGTEGS 368 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+FS+ G VN VE M T ++I K G G V GG S +P Sbjct: 369 KGTKIFSLVGKVNNTGLVEVPMGTTLRDIIYKIGG-GIRGGKRFKGVQTGGPSGGVIPER 427 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + + +D+D L ++GS +G+ +IVMD T I+ F +ESCG+C PCREG Sbjct: 428 YL-DSPVDFDALTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLK 486 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M +++ +V G ++ +I+LL E++ ++ ++CALG AA P+ I+ F E I Sbjct: 487 RMREILDDIVAGKGREGDIELLKEIADVMKSASLCALGTTAANPVLSTIRYFSGEYEAHI 546 Query: 417 DQYHRCN 423 RC Sbjct: 547 RD-GRCP 552 >gi|285017797|ref|YP_003375508.1| NADH-quinone oxidoreductase chain f (nadh dehydrogenaseI chain f) (ndh-1, chain f) (nuo6) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473015|emb|CBA15520.1| probable nadh-quinone oxidoreductase chain f (nadh dehydrogenaseI chain f) (ndh-1, chain f) (nuo6). oxidoreductase protein [Xanthomonas albilineans] Length = 447 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 207/420 (49%), Positives = 268/420 (63%), Gaps = 8/420 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KIL++ + +I VK S LRGRGGAGF T Sbjct: 19 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILDEKIPPEQVIEMVKQSNLRGRGGAGFPT 78 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 79 GLKWSFMPKNAP--QKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 136 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 137 NYLRGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 196 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ G + N G K Sbjct: 197 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 256 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L IPGG S+P L A +++G Sbjct: 257 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LKPGRTLKGAIPGGVSMPVLKAEELKG 314 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S +K R+S F+ ESCGQCTPCREGTGWM R Sbjct: 315 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 374 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 375 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 434 >gi|227112323|ref|ZP_03825979.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 449 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 173/409 (42%), Positives = 244/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYAAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M EPH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GTA + +D +++ L F+ ESCG CTPCR+G W ++++ L KG Q Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKILRALEKGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429 >gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14] gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14] Length = 635 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 153/425 (36%), Positives = 237/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDSENIEEYIAREGYFALADCLLNKQPADVIDVIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E I ++IG+ Sbjct: 209 GFPTGLKWEFASKQVSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ A GLLG + + DI + +GAGA++CGEETA Sbjct: 268 SKGLVYIRAEYPLAINRLKKAIEQARAYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NFR E + Sbjct: 506 LLELLNKITEGRGTEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFRDEYLEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|77918523|ref|YP_356338.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Pelobacter carbinolicus DSM 2380] gi|77544606|gb|ABA88168.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Pelobacter carbinolicus DSM 2380] Length = 571 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 158/420 (37%), Positives = 234/420 (55%), Gaps = 7/420 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q+ R+ N + + D + R + K L E + +INE SGLRGRGGA Sbjct: 149 FFALQELRVMRNRGLIDPAKIKDYIGRDGYQGAIKALTEMSSEEVINEAIGSGLRGRGGA 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW F +D Y++ NADE +PG DR++M +PH++IEG +I + AIGA Sbjct: 209 GFPIGLKWKFAAAEKNDI-KYILCNADEGDPGAFMDRNVMESDPHSIIEGLIIGAKAIGA 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IY R E+ E+L A+++ A LLG N G+ DI V+ GAGA++CGEETA Sbjct: 268 HQGYIYCRAEYPLAIETLNKAINQARALDLLGENILGTGFSFDISVYEGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR KPPFPA GL+ PT +NNVE+++ +P I+ +GA WY G E + Sbjct: 328 LMRSIEGKRGNPRPKPPFPAKAGLFEKPTVLNNVETLSNIPQIIVKGADWYKEIGTEKSP 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FSI+G + VE + T D ++ + GI NL AV GG S C+P Sbjct: 388 GTKIFSITGDIENVGCVEVPIGTTVDTIVNQI--GIVSPDKNLKAVQLGGPSGGCIPKDY 445 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +DY+ L+E G+ +G+ +I M + F + E+CG+C P REGT Sbjct: 446 MH-VAVDYETLQEYGAIMGSGGLIAMSDDKSGVDIAKFFIDFCQDEACGKCLPGREGTKQ 504 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M++++E++ G +I+ L + I +CAL A P+ ++ F +E + Sbjct: 505 MLQILEKIDSGEGSPDDIETLKVLCGVIRKTALCALCKTAVNPVLSTLRYFPEEYQEAVK 564 >gi|219849354|ref|YP_002463787.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] gi|219543613|gb|ACL25351.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] Length = 535 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 148/419 (35%), Positives = 245/419 (58%), Gaps = 6/419 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q + + + + + D ++ G + + ++ E +IN + SGLRGRGGA Sbjct: 112 FFTRQLPIVLRHCGRINPERIEDYIAVGGYRTLYHVIHEMTPAEVINVITRSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K + +++ NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 172 GYPTGLKWATVAKSPGE-RKFVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVRGE+ + LQ A+ + GLLG+ + G++ I + GAGA++CGEETA Sbjct: 231 EQGFIYVRGEYPLAIDRLQKAIVQARRLGLLGAQIFESGFNFRIDIRVGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A + I+ G W++ G E ++ Sbjct: 291 LIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANITAIIENGPEWFANIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT E++E+ GG G + AV GG S C+PA Sbjct: 351 GTKIFALTGKIRNTGLIEVPMGITLREIVEEIGGGTPDGSP-VKAVQTGGPSGGCIPAS- 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ ++VMD T+++ F K ESCG+C PCR GT Sbjct: 409 LFDTPVDYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEFCKEESCGKCIPCRVGTVQ 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++ ++ G A+ ++ + E+ + + ++C LG +A P+ + FR E+ I Sbjct: 469 LFNMLTKVRNGQAKGSDLVKIEELCELMRETSLCGLGQSAPNPVLSTLHYFRHEYEQLI 527 >gi|319787438|ref|YP_004146913.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas suwonensis 11-1] gi|317465950|gb|ADV27682.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas suwonensis 11-1] Length = 456 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 211/422 (50%), Positives = 275/422 (65%), Gaps = 8/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGF 60 + ++T L+ + S + + G + + +IL + ++ VK SGLRGRGGAGF Sbjct: 19 KEHQAVYTTLHFDKPWSYENYLKTGGYQALRRILTEKIPPADVVEMVKQSGLRGRGGAGF 78 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK D Y++ N+DESEPGT KDRDI+R+ PH +IEG IA +A G+ Sbjct: 79 PTGLKWSFMPK--GDMQKYILCNSDESEPGTAKDRDILRYNPHAVIEGMAIACYATGSTV 136 Query: 121 AFIYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 + Y+RGEF E E L+ A+ + Y G LG + G D+DI GAGAYICGEETAL Sbjct: 137 GYNYLRGEFHHEPFEHLEEALADAYKHGWLGKDILGSGVDIDIYNALGAGAYICGEETAL 196 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R GA W+ G+ NN G Sbjct: 197 MESLEGKKGQPRFKPPFPANFGLYGKPTTINNTETYASVPAIVRNGAEWFMNLGKPNNGG 256 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 K+FS+SGHV P E + F EL+ CGGIR + + AVIPGGSS+P LP M Sbjct: 257 CKIFSVSGHVARPGNHEIRLGTPFSELL-DLCGGIR-NGNRIKAVIPGGSSMPVLPGEVM 314 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 G MDYD +++ GSGLG+ AVIVMD +T +++A R++ FY ESCGQCTPCREGTGWM Sbjct: 315 MGLTMDYDSIQKAGSGLGSGAVIVMDHTTCMVRACQRIARFYYKESCGQCTPCREGTGWM 374 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R++ R+ A ++ +L + IEG TICA G+AAAWP+QG +++F E I Sbjct: 375 YRMLTRIANLEATLDDLHMLRTAAGQIEGHTICAFGEAAAWPVQGFLRHFWHEFEYAIVN 434 Query: 419 YH 420 Sbjct: 435 KR 436 >gi|114567343|ref|YP_754497.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338278|gb|ABI69126.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 407 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 167/415 (40%), Positives = 243/415 (58%), Gaps = 11/415 (2%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ RI YG + ++ G + + K + +I EVK SGLRGRGGAGF Sbjct: 1 MAEEMRIVLRNYGKVDPLNIDSYTQVGGYQALAKAKSMSQTDLIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 +TGMKWSF V +D Y++ NADE EPGT KDR IM ++P +++EG I +AIGA+ Sbjct: 61 NTGMKWSFSYGVKAD-QKYVICNADEGEPGTYKDRIIMENDPQSVLEGMAICGYAIGANK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGE+ E L A+ + GLLG D +I V GAGAY+CGEE+AL+E Sbjct: 120 GYIYCRGEYPYVVEILNKAIAQASEKGLLG-------DFNIEVRMGAGAYVCGEESALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G+PR KPPFP +GL+G PT VNNVE+ A +P I+ +GA WY G G GTK Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWGKPTIVNNVETFANIPAIVDKGADWYKGIGAAGYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G + +E + T ++++ GGI G AV GG+S +P + Sbjct: 233 VMTLTGDIVNRTVIEVPTNTTIRQVLDDFGGGI-TGGKKFKAVQIGGTSGGFIPES-LLD 290 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + +G+ LG+ A VMD + DI+ I R+S F+ HESCG+CTPCREGT M Sbjct: 291 TPIDFDSMSAIGATLGSGAFFVMDETRDIVDVIDRISKFFAHESCGKCTPCREGTQRMHE 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 ++ R+ G A ++D + + + +C LG AA P+ +K+FR + Sbjct: 351 MLHRVKNGGAVAGDLDYMERLGSVMSKACLCGLGQAAPAPVLTTLKHFRNDYTAK 405 >gi|225175972|ref|ZP_03729964.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168560|gb|EEG77362.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 618 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 159/422 (37%), Positives = 238/422 (56%), Gaps = 7/422 (1%) Query: 5 QDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ N + S++D +++ + + K LE II+EVK SGLRGRGG GF G Sbjct: 126 QVRVVMRNCGHIDPNSITDYLAQDGYMGLAKALEMTPQEIIDEVKESGLRGRGGGGFPAG 185 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KW +V +D Y++ NADE +PG DR ++ +PH++IEG IA +AIGA + Sbjct: 186 RKWESCLRVDAD-QKYVICNADEGDPGAFMDRSVLEGDPHSVIEGMAIAGYAIGATKGIL 244 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ L+ A+++ LLG N G+D ++ + GAGA++CGE TAL+ S+ Sbjct: 245 YVRAEYPLAIRQLKIAIEQAKERNLLGKNILGSGFDFELDIFQGAGAFVCGESTALVLSI 304 Query: 183 EGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 EG++G P+ P P + GL+G PT +NNV++ A V I+ RG W+ G EN GT + Sbjct: 305 EGRRGMPKPLPRPRTSEEGLWGKPTLLNNVKTFACVAQIIHRGTDWFKSIGTENCPGTAV 364 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G +N +E M I +++I GG+ GG AV GG S CLP M Sbjct: 365 FALTGKINKSGLIEVPMGIQLEKIINDIGGGVAGG-RAFKAVQTGGPSGGCLPPE-MLNL 422 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D L GS +G+ ++VMD +T ++ F ESCGQCTPCR GT M+ + Sbjct: 423 PVDFDSLTAAGSMMGSGGMVVMDDTTCMVDVARYFLEFSLEESCGQCTPCRAGTEQMLTI 482 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + + +G ++ +IDLL E+ + I +IC LG +A P+ I+ FR E I + Sbjct: 483 LNDISQGKGREGDIDLLVEMGEAIIDGSICGLGQSAPNPVLSTIRYFREEYEAHI-RNKE 541 Query: 422 CN 423 C Sbjct: 542 CP 543 >gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 618 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 159/426 (37%), Positives = 234/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R ++ + + + ++++ + + K L E +I EVK SGLRGRGG Sbjct: 131 FYKGQHRTALSHCGLINPECIEEAIAADRYFALAKALLEMTPAQVIEEVKRSGLRGRGGG 190 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW V D Y++ NADE +PG DR I+ +PH ++E IA +AIGA Sbjct: 191 GFPTGRKWELAAAVEGD-VKYVLCNADEGDPGAFMDRSIIEGDPHAILEAMAIAGYAIGA 249 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG N G+ DI + GAGA++CGEETA Sbjct: 250 QHGYIYVRAEYPVAVHRLEIAIRQARELGLLGENILGTGFSFDIDIRLGAGAFVCGEETA 309 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+G PT NNVE+ A VP I+ GA + G E + Sbjct: 310 LIASIEGQRGLPRPRPPFPAQKGLWGKPTLNNNVETYANVPYIILHGAEAFRSVGTEKSP 369 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G+V VE + T E++ GGI G A GG S C+PA Sbjct: 370 GTKVFAVAGNVMNTGLVEVPIGTTLREIVYGMAGGIPKGRP-FKAAQTGGPSGGCIPA-H 427 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MDY+ L E+GS +G+ +IVMD + ++ F + ESCG+C PCR GT Sbjct: 428 LLDIPMDYEPLNEVGSMMGSGGLIVMDDQSCMVDVARFYLQFTQDESCGKCPPCRIGTKR 487 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ +++R+V+G ++D L ++ I+ +C LG A P+ ++ FR E + Sbjct: 488 MLEILDRIVEGEGTMEDLDELERLANGIKATALCGLGQTAPNPVLSTLRYFREEYEAHVR 547 Query: 418 QYHRCN 423 H C Sbjct: 548 DKH-CP 552 >gi|296268278|ref|YP_003650910.1| NADH-quinone oxidoreductase subunit F [Thermobispora bispora DSM 43833] gi|296091065|gb|ADG87017.1| NADH-quinone oxidoreductase, F subunit [Thermobispora bispora DSM 43833] Length = 428 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 200/419 (47%), Positives = 260/419 (62%), Gaps = 9/419 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N +L+ G + K L D II VK SGLRGRGGAGF TGMKW Sbjct: 8 LTRNWDRPDSFTLAGY---GDYSAARKALSMDPDTIIQMVKDSGLRGRGGAGFPTGMKWG 64 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F+P+ +PHYLVVNADESEPGTCKD +M PH LIEG +I S+AI A+ AFIYVRG Sbjct: 65 FIPQND-GKPHYLVVNADESEPGTCKDIPLMMANPHALIEGAIITSYAIRANHAFIYVRG 123 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + LQAAV E Y +G LG N GYD++++VH GAGAYICGEETALL+SLEG++ Sbjct: 124 EVLHVIRRLQAAVREAYEAGYLGRNIFGSGYDLELVVHCGAGAYICGEETALLDSLEGRR 183 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPRLKPPFPA GLY CPT +NNVES+A VP+I+ G W++ G E ++G +FS+SG Sbjct: 184 GQPRLKPPFPAVAGLYACPTVINNVESVATVPSIVANGPEWFASMGTEKSKGFGIFSLSG 243 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E + IT EL+E G L PGGSS P + +D++ Sbjct: 244 HVARPGQYEAPLGITLRELLEMAGG--IRAGHRLKFWTPGGSSTPIFTEEHL-DVPLDFE 300 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL Sbjct: 301 SVAANGSMLGTRAIQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLYRLE 360 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 KG + ++ + +++ NI GR+ CALGD A I +K FR + + C F Sbjct: 361 KGQGTEEDLATITDIADNILGRSFCALGDGATSSIHSSVKLFRDEYLKHF-EIGGCPFD 418 >gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54] gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54] Length = 634 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 230/425 (54%), Gaps = 7/425 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q RI +G ++ + + ++K L++G D ++ E+K S LRGRGG GF Sbjct: 140 FARQKRILFASFGFTDPTNIEHYLVHDGYLALEKSLQEGPDMVLTEIKKSALRGRGGGGF 199 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 KW K P Y+V NADE +PG DR ++ +PH ++EG IA IG+ Sbjct: 200 PAARKWEAGRKAT-GHPKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGLTIGSEK 258 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ LQ A+D+ LLG+N + DI + GAGA++CGE TAL Sbjct: 259 GYIYVRAEYPLAIARLQNAIDQAKEKNLLGANILGTDFSFDIELFQGAGAFVCGESTALT 318 Query: 180 ESLEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +S++G +G P+ P P + GL+ PT +NNV++ A VP I+ G ++ G E ++G Sbjct: 319 QSIQGYRGMPKASPRPRTTDEGLFDKPTLLNNVKTFAYVPKIINSGGESFAAIGTEKSKG 378 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T +F+++G V + +E M T E++ + GG+ G A+ GG S CLPA + Sbjct: 379 TAVFALTGMVKHCGLIEVPMGTTLREIVFELGGGMVGESP-FKAIQSGGPSGGCLPAHTL 437 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DYD L G+ +G+ ++VMD ST ++ F + ESCGQCT C+ GT M Sbjct: 438 -DTPVDYDSLVSAGAMMGSGGLVVMDESTCMVDIARYFLDFTQKESCGQCTLCKLGTKQM 496 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++E +V G ++ +I+LL EV + + ++C LG +AA P+ IK FR E I Sbjct: 497 LNILEDIVAGRGKEGDIELLLEVGEAVNAGSLCGLGKSAANPVLTTIKYFRDEYEAHIRD 556 Query: 419 YHRCN 423 C Sbjct: 557 -KACP 560 >gi|284106850|ref|ZP_06386293.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3] gi|283830029|gb|EFC34305.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3] Length = 446 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 187/403 (46%), Positives = 256/403 (63%), Gaps = 6/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SLSD G + + +L +I VK SGLRGRGGAGF TG+KW F+PK P Sbjct: 20 SLSDYEGTGGYKALKTVLGNVPPNDLIEMVKKSGLRGRGGAGFPTGVKWGFIPKDHPG-P 78 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL NADESEPGT KDR +M +PH ++EG I+ +AIGA A+IY+RGEF + L+ Sbjct: 79 RYLCCNADESEPGTFKDRQLMERDPHQILEGIAISCYAIGAQTAYIYIRGEFRLAAKILE 138 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E Y +G LGS+ G V + VH GAGAYICGEETALLESLEGK+G+PR KPPFP Sbjct: 139 RAITEAYQAGHLGSDIYGSGITVHVYVHVGAGAYICGEETALLESLEGKRGKPRTKPPFP 198 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVE 255 A GLY PT VNNVE++A VP I+ RGA W++ G + GT++F +SGHV P E Sbjct: 199 ATHGLYQKPTVVNNVETLANVPHIVNRGADWFASIGAPPKSTGTRVFCLSGHVKRPGNYE 258 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 ++ TF +LI + GG+R L A IPGG+S P L + +D++ + GS Sbjct: 259 LPVNATFRDLIYELGGGMRSD-KPLKAFIPGGASAPFLTPDHV-DVQLDFESVALAGSMS 316 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ + VM+ T ++ A RL F+ HESCG+CTPCREG+ W++++++R++ + ++ Sbjct: 317 GSGGITVMEEGTSMVWAALRLMEFFYHESCGKCTPCREGSSWIVQILQRIMNKQGRPDDL 376 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L E+ +NI GRT+CA GDA P+Q +K +R E I++ Sbjct: 377 RTLTEICENIGGRTVCAFGDAEIAPVQSTLKYWRNEYEALIEE 419 >gi|253989004|ref|YP_003040360.1| NADH dehydrogenase I subunit F [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780454|emb|CAQ83616.1| nadh dehydrogenase i chain f (nadh-ubiquinone oxidoreductase chain 6 (nuo6) [Photorhabdus asymbiotica] Length = 454 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ + +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 28 QPVWLDEYRSKSGYRGAEKALKSMTPNEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 87 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ Sbjct: 88 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 147 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 148 HLRKAIEEAKAAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 207 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G++G PT VNNVE++ VP+IL G WY G G+ + GTKL SG V P Sbjct: 208 PFPATSGVWGKPTCVNNVETLCNVPSILEYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNP 267 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 268 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTAEHL-DLPMDFENIAKA 325 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ + +G Q Sbjct: 326 GSRLGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKILRAIERGEGQ 385 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G T CA A P+Q IK FR E I Sbjct: 386 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 431 >gi|51246061|ref|YP_065945.1| NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea psychrophila LSv54] gi|50877098|emb|CAG36938.1| probable NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea psychrophila LSv54] Length = 550 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 146/425 (34%), Positives = 232/425 (54%), Gaps = 7/425 (1%) Query: 1 MLTDQDRIFTN-LYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q ++ + + + + ++ G + ++ L + +I+EV ASGLRGRGGA Sbjct: 116 FFNKQRKVVLEYCGKIDPERIEEYIAVGGYQSLYTALRQMTPKEVIDEVTASGLRGRGGA 175 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K + Y+V NADE +PG DR ++ +PH +IEG I ++A+GA Sbjct: 176 GYPTGLKWSTVSKAIN-AVKYVVCNADEGDPGAFMDRSVLESDPHRVIEGMAIGAYAVGA 234 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IYVR E+ + LQ A+ + G+LG+ + DI + GAGA++CGEETA Sbjct: 235 RQGIIYVRAEYPLAVKRLQKAITQAKRIGILGNGIFNSDFQFDIQIRLGAGAFVCGEETA 294 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG+ G+P +PP+PA GL CPT +NNVE+ A + I+R G W + G ++ Sbjct: 295 LIASIEGRVGKPCPRPPYPAESGLKQCPTLINNVETFANIAPIIRNGGQWLASIGTSKSK 354 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V +E +M T E++ G AV GG S C+P Q Sbjct: 355 GTKVFALAGKVQQKGLIEVAMGTTLGEIVFDIGG-GIADGGTFKAVQTGGPSGGCIPK-Q 412 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L ++GS +G+ +IVMD+ + ++ F ESCG+C PCR GT Sbjct: 413 FLDMGVDYESLAKVGSIMGSGGMIVMDQGSCMVDVARFFVEFCMSESCGKCVPCRVGTRQ 472 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M V+ ++ G + ++ LL E+ ++ +C LG A+ PI + F+ I+ Sbjct: 473 MHDVLGKIASGRGEASDLTLLEELCDLVKNTALCGLGQASVNPILSTLCYFKDEYLAHIE 532 Query: 418 QYHRC 422 + RC Sbjct: 533 E-KRC 536 >gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] Length = 635 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 151/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDSENIEEYIAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K S Y+V NADE +PG DR IM +PH+++E I ++IG+ Sbjct: 209 GFPTGLKWEFASKQVS-NVKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 SKGLVYIRAEYPLAINRLKKAIEQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NFR E + Sbjct: 506 LLELLNKITEGRGTEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFRDEYLEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|268591139|ref|ZP_06125360.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131] gi|291313365|gb|EFE53818.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131] Length = 452 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 169/409 (41%), Positives = 243/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +++ L+ D ++N VK +GL+GRGGAGFSTG+KWS MPK + Sbjct: 26 QPVWLDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 85 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + Y + NADE EPGT KDR +M PH L+EG + ++A+ A+ +I++RGE++ + Sbjct: 86 MKLRYFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAAQ 145 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 146 NLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 205 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P Sbjct: 206 PFPATSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNP 265 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 266 GLWELPFGTTAREVLEDYAGGMRDGLK-LKAWQPGGAGTDFLTNDHL-DLPMDFENIAKA 323 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q Sbjct: 324 GSRLGTALAMAVDHEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 383 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 384 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGISQK 432 >gi|183599632|ref|ZP_02961125.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827] gi|188021884|gb|EDU59924.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827] Length = 452 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 170/409 (41%), Positives = 243/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + V++ L+ D +++ VK +GL+GRGGAGFSTG+KWS MPK + Sbjct: 26 QPVWLDEYRSKNGYKGVERALKGMAPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 85 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + Y + NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ + Sbjct: 86 MKLRYFLCNADEMEPGTYKDRLLMEQLPHLLVEGMIIGAYALKAYRGYIFLRGEYVEAAK 145 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 146 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 205 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P Sbjct: 206 PFPATSGAWGKPTCVNNVETICNVPAILEHGEQWYINLSAGKSKDAGTKLMGFSGRVKNP 265 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 266 GLWELPFGTTAREVLEDYAGGMRDGL-TLKAWQPGGAGTDFLTGDHL-DLPMDFESIGKA 323 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q Sbjct: 324 GSRLGTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 383 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 384 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGISQK 432 >gi|146299001|ref|YP_001193592.1| NADH-quinone oxidoreductase, F subunit [Flavobacterium johnsoniae UW101] gi|146153419|gb|ABQ04273.1| NADH dehydrogenase subunit F [Flavobacterium johnsoniae UW101] Length = 456 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 192/411 (46%), Positives = 262/411 (63%), Gaps = 16/411 (3%) Query: 21 SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G + +V+K L+ D + EVK SGLRGRGGAGF GMKWSF+ K S RP + Sbjct: 19 EVYRQNGGYASVEKALKTLTPDEVTEEVKKSGLRGRGGAGFPAGMKWSFIDK-KSGRPRH 77 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 LV NADESEPGT KDR +M + PH LIEG + +S+A+GA+ ++IY+RGE++ + L+ A Sbjct: 78 LVCNADESEPGTFKDRFLMEYIPHLLIEGMITSSYALGANLSYIYIRGEYMWVFKILERA 137 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + E A+G LG N GYD+++ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA Sbjct: 138 IAEAKAAGWLGKNILGSGYDLELHVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+ PT VNNVE+IA VP I+ Y+ G + GTKL S SGH+ P E + Sbjct: 198 SGLWANPTVVNNVETIATVPWIVNNSGDDYAKIGIGRSTGTKLISASGHIKNPGVYEIEL 257 Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDGLK- 309 ++ DE + +++ GG+ L A +PGGSSVP LPA + +M Y+ L Sbjct: 258 GLSVDEFMNSDEYLGGMSSSRP-LKAFVPGGSSVPILPAELIFKTANGEDRLMTYESLSD 316 Query: 310 ---EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 GS LG+ IV + + +++ W + FY HESCGQCTPCREGTGW+ +++ R+ Sbjct: 317 GGFATGSMLGSGGFIVYNDTACVVRNTWNFARFYHHESCGQCTPCREGTGWLEKILWRIE 376 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 G ++ +I+LL+ + IEG TIC LGDAA+WP+ I++FR E + Sbjct: 377 NGQGREEDIELLWSIQSKIEGNTICPLGDAASWPVAAAIRHFRDEFEYHVR 427 >gi|258593430|emb|CBE69769.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [NC10 bacterium 'Dutch sediment'] Length = 427 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 203/423 (47%), Positives = 276/423 (65%), Gaps = 8/423 (1%) Query: 6 DRIFTNLYGLQGK--SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62 ++I T + + G +L + + G + + K+L++ +I VK SGLRGRGGAGF T Sbjct: 3 EKILTKRFEIPGYRGTLDEYEATGGYQAIAKVLKEHTPTSLIELVKRSGLRGRGGAGFPT 62 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KW F+PK SD P YLV NADESEPGT KDR+++ +PH L+EG ++ FAIG A+ Sbjct: 63 GVKWGFVPK-GSDLPKYLVCNADESEPGTFKDRELIMRDPHQLLEGILLGGFAIGCRAAY 121 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE + L+ AV + A GL+G + + +D+ VH GAGAYICGEETALLES Sbjct: 122 IYIRGELVAGARILEQAVSDAAARGLVGKDILGSRFSLDLHVHRGAGAYICGEETALLES 181 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G PRLKPPFPA GLY PT VNNVE++ +P I+ RGA W++G G + GT++ Sbjct: 182 LEGKRGLPRLKPPFPATSGLYRKPTVVNNVETLCNIPHIVMRGAEWFAGIGTPKSTGTRI 241 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F +SGHV P E + + ELI +H GGIR L AVIPGGSSVP L + A Sbjct: 242 FGVSGHVRRPGIYECRIDVPMRELIFEHAGGIR-EGRRLKAVIPGGSSVPVLTERHL-DA 299 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MD++ L GS G+ VIVMD +T +++ +S FY HESCGQCT CREGT W+ + Sbjct: 300 RMDFESLATAGSMAGSGGVIVMDDTTCMVRVGEIVSRFYHHESCGQCTQCREGTAWLHKT 359 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ +G ++ ++DLL ++ N++G+TIC L DAAA PI+ +K FR E+ I + H Sbjct: 360 LRRIEEGRGRQADLDLLLDICDNMKGKTICPLSDAAAMPIESYLKYFRDEFEQHIVE-HA 418 Query: 422 CNF 424 C F Sbjct: 419 CPF 421 >gi|16761249|ref|NP_456866.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141055|ref|NP_804397.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052940|ref|ZP_03345818.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417788|ref|ZP_03350900.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427014|ref|ZP_03359764.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213647300|ref|ZP_03377353.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829696|ref|ZP_06547237.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25285050|pir||AB0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503548|emb|CAD07556.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhi] gi|29136681|gb|AAO68246.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 445 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 168/406 (41%), Positives = 236/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTIAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|37526973|ref|NP_930317.1| NADH dehydrogenase I subunit F [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786406|emb|CAE15459.1| NADH dehydrogenase I chain F (NADH-ubiquinone oxidoreductase chain 6) (NUO6) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 454 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 240/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 28 QPVWLDEYRSKSGYRGAEKALKSMSPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 87 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ Sbjct: 88 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 147 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 148 HLRKAIEEAKAAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 207 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G +G PT VNNVE++ VP+IL G WY G G+ + GTKL SG V P Sbjct: 208 PFPATSGAWGKPTCVNNVETLCNVPSILEYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNP 267 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 268 GLWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTAEHL-DLPMDFENIAKA 325 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ + +G Q Sbjct: 326 GSRLGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIERGEGQ 385 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G T CA A P+Q IK FR E I Sbjct: 386 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 431 >gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 627 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 241/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ G + + + D ++ + + K+L +INEV SGLRGRGG Sbjct: 141 FYKRQVRVTLRYCGRINPEDIYDYIAHRGYRAIAKVLNNMTPQDVINEVTESGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWSF Y++ N DE +PG DR +M PH++IEG +IA +AIGA Sbjct: 201 GFPTGRKWSFAA-ASPGTKKYIICNGDEGDPGAFMDRSVMEGNPHSVIEGMMIAGYAIGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY R E+ + ++ A+ + A GLLG+N ++ I + GAGA++CGEETA Sbjct: 260 DEGYIYARAEYPLAIQRMRKAITDAEAIGLLGNNILGSNFNFKIHIKEGAGAFVCGEETA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA GL+GCPT +NNVE++A + I+ GA+ + +G ++ Sbjct: 320 LIASIEGQRGMPRPRPPFPAVKGLWGCPTVINNVETLANLRYIINNGAALFKSYGTNHSA 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G + VE M IT E++ GG+R G AV GG S CL + Sbjct: 380 GTKTFALAGQIQNTGLVEVPMGITLREIVFDIGGGLREG-KKYKAVQIGGPSGGCLTEEK 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L + G+ +G+ ++VM T +++ F ++ESCG+C PCREGT Sbjct: 439 L-DLPLDYDELIKAGAMIGSGGLVVMGDDTCMVETAKFFMSFVQNESCGKCVPCREGTKQ 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ ++ +G + ++ +L E++ +++ ++C LG A P+ ++ FR + Sbjct: 498 MLALLTKITEGKGTEEDLVVLEELAHSVKDGSLCGLGKTAPNPVLTTLRYFRDEYIAHVR 557 Query: 418 QYHRCN 423 +C Sbjct: 558 D-KKCP 562 >gi|308374786|ref|ZP_07667861.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu006] gi|308340530|gb|EFP29381.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis SUMu006] Length = 422 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 203/413 (49%), Positives = 268/413 (64%), Gaps = 11/413 (2%) Query: 20 LSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD- 75 ++ + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ + Sbjct: 1 MATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 60 Query: 76 --RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE + Sbjct: 61 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 120 Query: 134 ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+ Sbjct: 121 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 180 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P Sbjct: 181 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 240 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ G Sbjct: 241 QYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAAG 297 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 298 SMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSH 357 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S +I G++ CALGD AA P+ IK+FR + + C F Sbjct: 358 EDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLGHV-EGGGCPFD 409 >gi|110806247|ref|YP_689767.1| NADH dehydrogenase I subunit F [Shigella flexneri 5 str. 8401] gi|110615795|gb|ABF04462.1| NADH dehydrogenase I chain F [Shigella flexneri 5 str. 8401] Length = 445 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 168/406 (41%), Positives = 237/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICG+ETAL+ LEG + PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGDETALINFLEGHRAYPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|119510367|ref|ZP_01629502.1| hydrogenase subunit [Nodularia spumigena CCY9414] gi|119465004|gb|EAW45906.1| hydrogenase subunit [Nodularia spumigena CCY9414] Length = 533 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 145/411 (35%), Positives = 239/411 (58%), Gaps = 5/411 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + ++ + + +L E +++ + SGLRGRGGAG+ TG+KW Sbjct: 126 VLENSGKVDPERIQSYIAAQGYQVLYHVLREMTPSEVVDAITRSGLRGRGGAGYPTGLKW 185 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K D +++ NADE +PG DR ++ +PH ++EG IA++A+GA+ +IY+R Sbjct: 186 ATVAKAEGD-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGANQGYIYIR 244 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ LQ A+ + + G+LGS +D I + GAGAY+CGEETAL+ S+EGK Sbjct: 245 AEYPIAINRLQTAIRQAQSFGILGSQIFDSRFDFKIDIRIGAGAYVCGEETALMASIEGK 304 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G P +PP+PA GL+G PT +NNVE+ A V I+R GA W++ G E ++GTK+F+++ Sbjct: 305 RGTPHPRPPYPAESGLWGYPTLINNVETYANVAPIIRNGAEWFASIGTEKSKGTKVFALA 364 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G++ +E M + +++E G + AV GG S C+PA + +DY Sbjct: 365 GNITNTGLIEVPMGTSLQQIVEVMGG-GVPNGGVVKAVQTGGPSGGCIPASA-FDSPVDY 422 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L E+GS +G+ +IVMD ST+++ F ESCG+C PCR GT + +++ R+ Sbjct: 423 ESLTELGSIMGSGGMIVMDESTNMVDVARYFMEFCMDESCGKCIPCRVGTVQLYKLLTRI 482 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G A +++LL E+ ++ ++C LG +A P+ ++ FR E I Sbjct: 483 SAGEASLADLELLEELCDMVKHTSLCGLGQSAPNPVFSTLRYFRDEYLELI 533 >gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 623 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 241/426 (56%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +Q I + + + + D M RG + ++ K+L R+ +I +KASGLRGRGG Sbjct: 138 FFKNQKFYIMEGIGTSECEKIEDYMGRGGYKSLLKVLSSMKREEVIETIKASGLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K D ++V NADE +PG +R ++ +PH+++EG +IA++ +GA Sbjct: 198 GFPTGLKWEFAYKAKGD-KKFVVCNADEGDPGAFMNRTLLERDPHSILEGMIIAAYTVGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ E A+++ A GLLG N G+ D+ V GAGA++CGEETA Sbjct: 257 QKGYAYIRAEYPIAVEMFNKAINDAKALGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR +PPFPA GL+G PT +NNVE+ A VP I+R G Y G E + Sbjct: 317 LLASIEGKRGVPRPRPPFPAQKGLWGYPTLINNVETYANVPKIIRDGVKKYRENGVEKSP 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T ++E CGG + A+ GG S CLP Sbjct: 377 GTKMFSVTGPLKLTGIIEIPFGTTIRYVLENICGGT-TDGKKIKAIQIGGPSGACLPEKY 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD LK + + +G+ ++ + + +++ F K ESCG+C PCREGT Sbjct: 436 -FDLPLDYDTLKSIDAMVGSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQ 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ +G A + +++ L ++K I+ ++C LG A PI +K+FR E I+ Sbjct: 495 AYNILEKFTQGKATEEDLENLEYLAKIIKTASLCGLGKTAPNPILSTLKHFREEYIEHIN 554 Query: 418 QYHRCN 423 +C Sbjct: 555 --GKCP 558 >gi|237732315|ref|ZP_04562796.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2] gi|283832286|ref|ZP_06352027.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220] gi|226907854|gb|EEH93772.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2] gi|291071930|gb|EFE10039.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220] Length = 445 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 237/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G +G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPASSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|145589229|ref|YP_001155826.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047635|gb|ABP34262.1| NADH dehydrogenase subunit F [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 432 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 208/418 (49%), Positives = 267/418 (63%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D SRG + + ++ D II E+KAS LRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWRLKDYESRGGYQQLRHLINDKVAPDAIIAELKASSLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITTGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + A++E A+G LG + + G GAYICGEETALLESLEG Sbjct: 131 HGEIWEVYSRFEEALEEARAAGYLGDKILGSEFSFQLHASPGWGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL G Y G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLELGKPNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V +P E + F EL+ K GG+R G L AVIPGGSS P +P QM MD Sbjct: 251 SGDVVHPGNYEIPLGTPFAELL-KLAGGMRDGIP-LKAVIPGGSSSPVVPGAQMMELTMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVM+ + +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G + ++DLL +V+ NI+GRTICALGDAAA P++G++K++ + ++ RC Sbjct: 369 IEHGQGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHYMDEFVYHV-EHKRC 425 >gi|326799005|ref|YP_004316824.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21] gi|326549769|gb|ADZ78154.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21] Length = 450 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 206/414 (49%), Positives = 264/414 (63%), Gaps = 16/414 (3%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + +G + V+K L+ + ++ EVK SGLRGRGGAGF TGMKWSF+ K P Sbjct: 17 TFEVYRQKGGYRAVEKALKTLSPEEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVP 75 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV NADESEPGT KDR +M H PH LIEG ++AS+A+GA+ ++IYVRGE + + L+ Sbjct: 76 RYLVCNADESEPGTFKDRYLMTHIPHALIEGMIVASYALGANTSYIYVRGEMMPQIRILE 135 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E A+G LG+N GY++++ V G GAYICGEETALLESLEGK+G PR+KPPFP Sbjct: 136 RAIEEAKAAGFLGTNILGTGYNLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFP 195 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GLY CPT VNNVESIA IL G Y+ G E + GTKL S SG++N P E Sbjct: 196 AVAGLYNCPTVVNNVESIAATVPILNMGGEEYAKIGIERSTGTKLISASGNINKPGVYEI 255 Query: 257 SMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGL 308 + + +E I ++CGGI L AV+ GGSSVP LPA + +M Y+ L Sbjct: 256 ELGLPVEEFIYSDEYCGGI-TNGKRLKAVVAGGSSVPILPANLILKTAKGENRLMTYESL 314 Query: 309 K----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 G+ LG+ IV D I++ W + FY HESCGQC+PCREGTGWM +V+ R Sbjct: 315 ADGGFATGTMLGSGGFIVFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTGWMEKVLHR 374 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L G + +IDLL +VSK IEG TIC LGDAAAWP+ I++FR E + Sbjct: 375 LEYGHGKMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHVIH 428 >gi|302035987|ref|YP_003796309.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira defluvii] gi|300604051|emb|CBK40383.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira defluvii] Length = 435 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 191/409 (46%), Positives = 258/409 (63%), Gaps = 6/409 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 SL++ G + + K+L K + V SGLRGRGGAGF TG+KW F+PK P Sbjct: 20 SLAEYERAGGYQAIRKVLGKVSPADVTAVVMKSGLRGRGGAGFPTGVKWGFLPKDYQG-P 78 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL NADESEPGT KDR ++ +PH L+EG ++A +AIGA ++IY+RGEF+ + L+ Sbjct: 79 RYLCCNADESEPGTFKDRQLIERDPHQLLEGMLLACYAIGAASSYIYIRGEFVLGAKILE 138 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E A+G +G N +DI VH GAGAYICGEETALLESLEGK+G PR+KPPFP Sbjct: 139 QAINEARAAGYVGKNIFGSNTTIDIWVHRGAGAYICGEETALLESLEGKRGLPRVKPPFP 198 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVE 255 A GLY PT VNNVE++A +P IL RGA W++ G + GT++F +SGHV P E Sbjct: 199 ATHGLYNKPTVVNNVETLANLPHILNRGAEWFASIGSPPKSTGTRVFCVSGHVARPGNYE 258 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M ITF ELI + GG+R L A IPGG+S P L + +D++ + GS L Sbjct: 259 VPMGITFRELIYEQAGGMRSD-KKLKAFIPGGASAPFLTPDHL-DVKLDFESVALAGSML 316 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ V VM+ TD++ A RL F+ HESCG+C+PCREG+ W++++M R+V Q ++ Sbjct: 317 GSGGVTVMEEGTDMVWAALRLMEFFYHESCGKCSPCREGSSWLVQIMRRIVNKRGQLADL 376 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + L ++ KNI GRT+CA GDA PI +K++R I N Sbjct: 377 ETLTDLCKNIAGRTVCAFGDAEVSPILSTLKHWRHEYVAMIHAAEAANL 425 >gi|261340672|ref|ZP_05968530.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC 35316] gi|288317086|gb|EFC56024.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC 35316] Length = 445 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 171/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + K L D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLEEYQAKNGYAGARKALGGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I E Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE++ VP IL G WY G + GTKL SG V P Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|77164632|ref|YP_343157.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC 19707] gi|254434237|ref|ZP_05047745.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] gi|76882946|gb|ABA57627.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707] gi|207090570|gb|EDZ67841.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani AFC27] Length = 429 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 165/416 (39%), Positives = 244/416 (58%), Gaps = 7/416 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK- 71 + L G + + + ++ ++ EVK S LRGRGGAGF TG+KWSF+P+ Sbjct: 17 HREPPDLKQYAQAGGYQGLQRAIKTLTPQEVLQEVKESNLRGRGGAGFPTGLKWSFVPRG 76 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 + RP YL+ NADE EPGT KDR +M +PH L+EG ++AS+AI A A+I++R E+ Sbjct: 77 DDAPRPKYLIANADEMEPGTFKDRLLMEGDPHQLLEGMILASYAIQAEVAYIFLRAEYWL 136 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 + L+ A+ E Y LG N + +++ +H AG YICGEETALL +LEGK+ PR Sbjct: 137 AAQRLKKAIAEAYQVNYLGKNLLGSTFSLELHLHTSAGRYICGEETALLNALEGKRAIPR 196 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 KPP+P GL+G PT VNNVE++ VP I+ RGA+WY R + GTK++ SG V + Sbjct: 197 AKPPYPQVSGLWGQPTVVNNVETLCNVPHIIARGAAWYQNLSRSEDGGTKIYGASGRVKH 256 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E M E++E+H GG++ G+ L +PGG+S L + MDYD ++ Sbjct: 257 PGAWELPMGTPIREILEEHAGGMKDGF-QLRGFLPGGASTDFLTEEHLE-VPMDYDSVQA 314 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT ++I++D T + + L F+ ESCG CTPCR+G W+ +++ + +G Sbjct: 315 AGSRLGTGSLIILDDRTCPVDMVRNLEHFFAQESCGWCTPCRDGLPWVEKILLGIEQGQG 374 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 Q +++ L ++ + G T CA A P+Q +K F+ E+ I Q RC F+ Sbjct: 375 QPEDLEYLMMHTRLLGPGHTFCAHAPGAMEPLQSALKYFKTDFEQHIHQ-QRCPFK 429 >gi|161524209|ref|YP_001579221.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans ATCC 17616] gi|189351034|ref|YP_001946662.1| NADH dehydrogenase I subunit F [Burkholderia multivorans ATCC 17616] gi|221199661|ref|ZP_03572705.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2M] gi|221205439|ref|ZP_03578454.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2] gi|221211740|ref|ZP_03584719.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD1] gi|160341638|gb|ABX14724.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans ATCC 17616] gi|189335056|dbj|BAG44126.1| NADH dehydrogenase I chain F [Burkholderia multivorans ATCC 17616] gi|221169101|gb|EEE01569.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD1] gi|221174277|gb|EEE06709.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2] gi|221180946|gb|EEE13349.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans CGD2M] Length = 436 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 206/418 (49%), Positives = 270/418 (64%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA++E A+G LG N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALEEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLELGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVVPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + ++GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ + ++ RC Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKRC 425 >gi|300723694|ref|YP_003713001.1| NADH dehydrogenase I subunit F [Xenorhabdus nematophila ATCC 19061] gi|297630218|emb|CBJ90869.1| NADH dehydrogenase I chain F [Xenorhabdus nematophila ATCC 19061] Length = 454 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 167/405 (41%), Positives = 236/405 (58%), Gaps = 7/405 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + S+ + +K L+ D ++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 29 PVWLDEYRSQNGYKGAEKALKGMAPDEVVALVKDAGLKGRGGAGFSTGLKWSLMPKDESM 88 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ Sbjct: 89 NIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVH 148 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ A++E ++GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPP Sbjct: 149 LRKAIEEAKSAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPP 208 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPC 252 FPA G +G PT VNNVE++ VP IL G WY G G+ + GTKL SG V P Sbjct: 209 FPATSGAWGKPTCVNNVETLCNVPAILEHGKEWYIGLSEGKSKDAGTKLMGFSGRVKNPG 268 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E T E++E + GG+R G A PGG+ L + MD++ + + G Sbjct: 269 LWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEDHL-DLPMDFESIAKAG 326 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 327 SRLGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIESGKGQP 386 Query: 373 REIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 387 GDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 431 >gi|220909416|ref|YP_002484727.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425] gi|219866027|gb|ACL46366.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425] Length = 543 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 150/417 (35%), Positives = 244/417 (58%), Gaps = 7/417 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I G + + + + ++ G + ++ K+L E ++ E+ SGLRGRGG Sbjct: 112 FFAHQLKIVREYSGKIDPERIEEYIAVGGYQSLHKVLYEMTPAEVVTEITRSGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ D Y++ N DE +PG DR ++ +PH ++EG IA +A+GA Sbjct: 172 GYPTGLKWATVAKMPGD-QKYVICNGDEGDPGAFMDRSVLESDPHLVLEGMAIAGYAMGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + FIYVR E+ + LQ A+ + GLLGS +D I + GAGA++CGEETA Sbjct: 231 NHGFIYVRAEYPLAIQRLQKAIQQAKKYGLLGSQIFDSHFDFKIEIRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G PR +PP+PA GL+ CPT +NNVE+ A + I+R GA WY+ G E ++ Sbjct: 291 LIASIEGGRGNPRPRPPYPAQFGLWHCPTLINNVETFANIAPIVREGADWYASIGTEKSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M I+ +++E+ GG+ G + AV GG S C+PA Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGISLRQIVEEMGGGVPEG--QVKAVQTGGPSGGCIPAD- 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ ++VMD ST++++ F + ESCG+C PCR GT Sbjct: 408 LLDTPVDYDSLTALGSMMGSGGMVVMDESTNMVEVAHFYMEFCRGESCGKCIPCRAGTVQ 467 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + ++ +L+ A ++D L E+ ++ ++C LG +A P+ ++ F E Sbjct: 468 LYGLLTKLLHKQATPADLDKLKELCAMVKETSLCGLGMSAPNPVLSTLRYFGEEYEA 524 >gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 637 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 243/426 (57%), Gaps = 9/426 (2%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ N L S+ D ++ G + ++K + + + ++ VK SGLRGRGG Sbjct: 130 FYKNQLRLLIGNNIKLDPTSIDDYIAIGGYTALEKAVCQMKPEQVVGLVKESGLRGRGGG 189 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF +G KW F + D Y+VVNADE +PG DR ++ PH ++EG +I ++AIGA Sbjct: 190 GFPSGNKWEFT-RNAPDPVKYVVVNADEGDPGAFMDRALLEGSPHAVLEGLIIGAYAIGA 248 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H F+YVR E+ ++ A+ + G LG N G+D + V GAGA++CGEETA Sbjct: 249 HEGFLYVRQEYPLAVHNITLAIQKAEEYGFLGKNILGSGFDFTVEVAQGAGAFVCGEETA 308 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+P+ +PPFPA GL+ PT +NNVE+ A +P I+ +G + ++ G ++ Sbjct: 309 LIRSLEGKTGEPKPRPPFPAVRGLWNKPTNINNVETWANIPLIINKGPAAFASVGTGGSK 368 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V VE M IT +++ K GGI G AV GG + C+P Sbjct: 369 GTKIFSLVGKVKNTGLVEVPMGITLRDIVYKIGGGIPGE-KKFKAVQTGGPAGGCMPES- 426 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L + GS +G+ +IV+D T ++ F ESCG+C PCREG Sbjct: 427 LLDMEVDFDQLTKAGSMMGSGGMIVLDEETCMVDFARFFLSFLAEESCGKCVPCREGIQQ 486 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ L G +K +++LL ++++ + ++CALG A P+ +K+FR + ++ Sbjct: 487 MLAILNDLTHGKGKKGDLELLEQLTE-VSSASLCALGKGAPNPVLSTLKHFRDEYQAHME 545 Query: 418 QYHRCN 423 +C Sbjct: 546 --GKCP 549 >gi|218295765|ref|ZP_03496561.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23] gi|218243924|gb|EED10451.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23] Length = 437 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 195/426 (45%), Positives = 266/426 (62%), Gaps = 13/426 (3%) Query: 6 DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 R LY G +L +++G ++ K+L EK + +I EVK SGLRGRGGAGF Sbjct: 11 PRFERTLYAHVGKEGSWTLDFYLAQGGYETAKKVLKEKTPEEVIEEVKRSGLRGRGGAGF 70 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A Sbjct: 71 PTGVKWSFMPKD--GQQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATV 128 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGE+ R + L+AA+ E A G LG N G+ D+ VH GAGAYICGEETAL+ Sbjct: 129 GYIYVRGEYRRAADRLEAAIAEARARGYLGQNLFGTGFSFDLHVHRGAGAYICGEETALM 188 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG + PRLKPPFPA GL+G PTT+NNVE++A V IL RGA W++ G E ++G Sbjct: 189 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLAAVVPILERGADWFAQMGTEGSKGM 248 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298 KL+ +SG V P E M TF ELI + GG + + A+IPGGSS P LP + ++ Sbjct: 249 KLYQVSGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQALIPGGSSTPPLPFSEEV 305 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357 M Y+ L+ GS LGT VI++ ++ A+W L+ FY HESCG+CTPCREG + Sbjct: 306 LDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGF 365 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ + ++ G ++++++ L + IEGR+ C L DAA WP++G +K+F+ Sbjct: 366 MVNLFAKIGTGEGEEKDVETLEALLPLIEGRSFCPLADAAVWPVKGSLKHFKDQYLALAR 425 Query: 418 QYHRCN 423 + Sbjct: 426 EKKPVP 431 >gi|217970161|ref|YP_002355395.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T] gi|217507488|gb|ACK54499.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T] Length = 439 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 209/424 (49%), Positives = 273/424 (64%), Gaps = 7/424 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59 ++ Q I G + L D ++RG + + KIL + +D II E+K S LRGRGGAG Sbjct: 1 MSTQGMILAGCDGDRTWRLQDYVARGGYSALRKILAEKIPQDAIIAELKTSVLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSFMP+ YL N+DE EPGT KDRDI+R+ PH++IEG IA++A+GA Sbjct: 61 FPTGLKWSFMPRSFPG-DKYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGAA 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 + Y+ GE + A+ E + +G +G N + ++ HHG GAYICGEETAL Sbjct: 120 RGYNYIHGEIFETYSRFEEALAEAHEAGFIGRNILGSDFSFELFAHHGYGAYICGEETAL 179 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LES+EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+ G + G+ NN G Sbjct: 180 LESIEGKKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIMNMGGEAFLNLGKPNNGG 239 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 KLFS+SGHVN P E + F EL+E G G + AVIPGGSS P +P G M Sbjct: 240 MKLFSVSGHVNRPGNYEIPLGTPFAELLEMAGGM--RGGRKIKAVIPGGSSAPVVPGGVM 297 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDYD + + GS LG+ AVIVMD +T +++A+ RLS FY ESCGQCTPCREGTGW+ Sbjct: 298 MDCTMDYDSISKAGSMLGSGAVIVMDETTCMVRALERLSYFYFEESCGQCTPCREGTGWL 357 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RV+ R+ G+ + ++DLL V+ NI GRTICALGDAA+ P+Q +K+F E I+ Sbjct: 358 YRVVHRIEHGLGRPDDLDLLNSVTTNIMGRTICALGDAASMPVQSFVKHFGSEFEYHIEN 417 Query: 419 YHRC 422 +C Sbjct: 418 -KKC 420 >gi|213853108|ref|ZP_03382640.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 436 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 168/406 (41%), Positives = 236/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTIAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|149280565|ref|ZP_01886681.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39] gi|149228680|gb|EDM34083.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39] Length = 453 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 205/422 (48%), Positives = 264/422 (62%), Gaps = 18/422 (4%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ G+ +L +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ Sbjct: 11 NVPGIN--TLDVYRQKGGYRAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFL 68 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 K P YLV NADESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE Sbjct: 69 AK-PEGVPRYLVCNADESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEM 127 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L+ A+ E +G LG N GYD+++ V G GAYICGEETALLESLEGK+G Sbjct: 128 MPQIRILERAIAEAKQAGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGN 187 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR+KPPFPA GLYGCPT VNNVESIA I+ G Y+ G + GTKL S SG++ Sbjct: 188 PRIKPPFPAIAGLYGCPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNL 247 Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPA------GQMRG 300 P E + + +E I ++CGGI L A + GGSSVP LPA Sbjct: 248 VRPGVYEIELGLPVEEFIYSDEYCGGIA-NGKRLKATVAGGSSVPVLPANLTLKLANGDP 306 Query: 301 AIMDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +M Y+ L G+ +G+ I D I++ W + FY HESCGQC+PCREGTG Sbjct: 307 RLMSYESLSEGGFATGTMMGSGGFIAFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTG 366 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 WM +V+ R+ G + +IDLL +VSKNIEG TIC LGDAAAWP+ I++FR E + Sbjct: 367 WMEKVLHRIEYGHGKMSDIDLLVDVSKNIEGNTICPLGDAAAWPVASAIRHFRDEFEWHV 426 Query: 417 DQ 418 + Sbjct: 427 KE 428 >gi|319950456|ref|ZP_08024370.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4] gi|319435879|gb|EFV91085.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4] Length = 466 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 202/420 (48%), Positives = 259/420 (61%), Gaps = 15/420 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + G + + L D +I+ V SGLRGRGGAGF TG KW F+P+ Sbjct: 15 DSWTLQAYLDNGGYSGLRTALAAEPDEVISTVLDSGLRGRGGAGFPTGRKWGFIPQDTGA 74 Query: 76 ---------RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 RPHYLVVNADESEPGTCKD +M PH LIEG +IA++AI A AFIY+R Sbjct: 75 DAADPSAAARPHYLVVNADESEPGTCKDMPLMLATPHVLIEGVIIAAYAIRASRAFIYLR 134 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + LQ AV E Y +G LG + G+D++++VH GAGAYICGEETALL+SLEG+ Sbjct: 135 GEVVPVLRRLQTAVAEAYEAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGR 194 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLY CPT VNNVES+A VP+IL+ G W+ G E + G L+S+S Sbjct: 195 RGQPRLRPPFPAVAGLYACPTVVNNVESLASVPSILQHGPEWFRSMGSEKSPGFTLYSLS 254 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + IT EL++ G L PGGSS P L Q+ +DY Sbjct: 255 GHVTRPGQYEAPLGITLRELLDLAGG--IRDGHTLKFWTPGGSSTPLLTDAQL-DMPLDY 311 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G G+ LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++M RL Sbjct: 312 EGCAAEGTMLGTKALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTFWLRQIMTRL 371 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G A E+D L ++S NI G++ CALGDAAA PI I+ FR I C F Sbjct: 372 EDGTATADELDRLLDISDNIVGKSFCALGDAAAAPIVSSIRLFRDEYLAHIPNG--CPFD 429 >gi|325915544|ref|ZP_08177855.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937] gi|325538260|gb|EGD09945.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937] Length = 429 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF T Sbjct: 3 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 62 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 63 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 120 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 121 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 181 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 241 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 298 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 299 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 358 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 359 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 414 >gi|197124712|ref|YP_002136663.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K] gi|220919433|ref|YP_002494737.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|196174561|gb|ACG75534.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K] gi|219957287|gb|ACL67671.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 441 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 204/422 (48%), Positives = 276/422 (65%), Gaps = 8/422 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + I + +G SL+ + G + +DK + I++EVK S LRGRGGAGF+TG Sbjct: 3 ETLILSKRWGKPDSASLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW+F+PK RP YL VNADESEPGT KDR I+ H+PH LIEG + +A+ H A++ Sbjct: 63 LKWTFLPKD--VRPRYLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYV 120 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGEF ++ L+ A+ E +G+LG K + +DI VH GAGAYICGEE+ALLES Sbjct: 121 YIRGEFAKQARILEQAIQEARDAGILGPRLLGKQDFPLDIHVHRGAGAYICGEESALLES 180 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKG PRLKPPFPA VGL+G PT +NNVE+IA VP I+ G + ++ G + GT+L Sbjct: 181 LEGKKGYPRLKPPFPAVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRL 240 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F +SGHVN P E+ + +LI + GGI GG L AVIPGGSS P L A ++ Sbjct: 241 FGVSGHVNRPGVYEKPVHYNLKKLIMEDAGGIVGGRK-LKAVIPGGSSAPVLAAHEI-DI 298 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +++D +K GS G+ VIV D S +++A+ R++ FY ESCGQCTPCREGT WM + Sbjct: 299 SLEFDAVKAAGSMSGSGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGI 358 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +E++ G A +++ L +V+ NI G TICALGDAAA P+Q +K F+P + + HR Sbjct: 359 LEKIEHGHATAADVEKLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHV-EAHR 417 Query: 422 CN 423 C Sbjct: 418 CP 419 >gi|114566549|ref|YP_753703.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337484|gb|ABI68332.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 407 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 165/415 (39%), Positives = 248/415 (59%), Gaps = 11/415 (2%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ RI YG + + D +++G + +++K +I EVK S LRGRGGAGF Sbjct: 1 MAEEMRIVLRNYGKIDPLKIDDYLAQGGYKSLEKARAMNTADLIAEVKKSNLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + GMKWSF +D Y++ NADE EPGT KDR IM ++PHTLIEG I ++AIGA Sbjct: 61 NCGMKWSFAAGAQAD-QKYVICNADEGEPGTYKDRLIMENDPHTLIEGMAICAYAIGATQ 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE+ +L A+++ GL+ D DI V GAGAY+CGEETAL+E Sbjct: 120 GYIYLRGEYPFLVSTLNTAINQAKEKGLV-------KDFDIEVRSGAGAYVCGEETALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PR KPP+P + GL+ PT VNNVE+ A +P I+ +GA WY+ G GTK Sbjct: 173 SIEGKRGEPRFKPPYPPSEGLWSKPTIVNNVETFANIPVIIEKGADWYASIGNPAYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N E + T E++ + GG+ G AV GG+S +P + Sbjct: 233 VFTLTGDINNRTFFEVPTNTTIREIVFQFGGGVPGD-KKFKAVQIGGTSGAFIP-DALLD 290 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + +D + +G+ LG+ A V+D S DI+ R++ F++HESCG+C PCREGT Sbjct: 291 TPVAFDSMSAIGATLGSGATFVIDESRDIVDVATRIAGFFEHESCGKCAPCREGTARTAE 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +ME++ +G +++ LL ++ + +C LG AA P+ IK+F+ E + Sbjct: 351 LMEKINEGRGSNKDVALLEKLGTVMSYSCLCGLGQAAPAPVLTTIKHFKADYEAK 405 >gi|86160615|ref|YP_467400.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter dehalogenans 2CP-C] gi|85777126|gb|ABC83963.1| NADH dehydrogenase subunit F [Anaeromyxobacter dehalogenans 2CP-C] Length = 441 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 204/422 (48%), Positives = 276/422 (65%), Gaps = 8/422 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + I + +G SL+ + G + +DK + I++EVK S LRGRGGAGF+TG Sbjct: 3 ETLILSKRWGKPDSASLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW+F+PK RP YL VNADESEPGT KDR I+ H+PH LIEG + +A+ H A++ Sbjct: 63 LKWTFLPKD--VRPRYLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYV 120 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGEF ++ L+ A+ E +G+LG K + +DI VH GAGAYICGEE+ALLES Sbjct: 121 YIRGEFAKQARILEQAIQEARDAGILGPRLLGKKDFPLDIHVHRGAGAYICGEESALLES 180 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKG PRLKPPFPA VGL+G PT +NNVE+IA VP I+ G + ++ G + GT+L Sbjct: 181 LEGKKGYPRLKPPFPAVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRL 240 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F +SGHVN P E+ + +LI + GGI GG L AVIPGGSS P L A ++ Sbjct: 241 FGVSGHVNRPGVYEKPVHYNLKKLIMEDAGGIVGGRK-LKAVIPGGSSAPVLAAHEI-DI 298 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +++D +K GS G+ VIV D S +++A+ R++ FY ESCGQCTPCREGT WM + Sbjct: 299 SLEFDAVKAAGSMSGSGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGI 358 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +E++ G A +++ L +V+ NI G TICALGDAAA P+Q +K F+P + + HR Sbjct: 359 LEKIEHGHATAADVEKLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHV-EAHR 417 Query: 422 CN 423 C Sbjct: 418 CP 419 >gi|167585976|ref|ZP_02378364.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ubonensis Bu] Length = 440 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 205/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D ++RG + + +ILE+ + +I +VKASGLRGRGGAGF TG+K Sbjct: 13 ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDI+R PH LIEG I ++A+G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE +AA++E A+G LG+N + + HHG GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYRRFEAALEEARAAGFLGNNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L G Y+ G+ NN GTK+FS+ Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLTVGPQAYAELGKPNNGGTKIFSV 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + F L+E G G + AVIPGGSS P +P M MD Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVMD + +++++ RLS FY ESCGQCTPCREGTGW+ RV+ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G ++ ++DLL V++NI GRTICALGDAAA P++G++K++ ++ H Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424 >gi|21243427|ref|NP_643009.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78048404|ref|YP_364579.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294624673|ref|ZP_06703343.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666772|ref|ZP_06732006.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924680|ref|ZP_08186118.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118] gi|21108980|gb|AAM37545.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78036834|emb|CAJ24527.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601029|gb|EFF45096.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603433|gb|EFF46850.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544886|gb|EGD16231.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118] Length = 444 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429 >gi|253689144|ref|YP_003018334.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755722|gb|ACT13798.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 449 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 172/409 (42%), Positives = 243/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYVAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M EPH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTENHL-DLPMDFEHIAKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GTA + +D +++ L F+ ESCG CTPCR+G W ++++ L G Q Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429 >gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583] gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583] gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium 6_1_63FAA] Length = 624 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 155/425 (36%), Positives = 239/425 (56%), Gaps = 6/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI N +SL + ++ G ++ + K L + + ++NEV S LRGRGG Sbjct: 136 FIAKQTRIALENCGKFDAESLDEYIASGGYEALSKALFDMTPEDVLNEVDKSKLRGRGGG 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + H++V N DE +PG D +M +P+ LIEG IA++A GA Sbjct: 196 GFPTGRKWKQVAAHKDVAEHFVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMTIAAYATGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG + + + ++ GAGA++CGE +A Sbjct: 256 QNGYIYVRAEYPLSVARLRKAIRQAEEKGLLGDHILGTDFQFHMHINRGAGAFVCGEGSA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP + GL+ PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 316 LTASIEGDRGMPRVKPPRTVDKGLWAKPTVLNNVETFANVPGIVLKGADWFKTIGTEGSP 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FSI+G + +E M T E+I GGI+GG D A+ GG S CL Sbjct: 376 GTKTFSITGAIENTGLIEVPMGTTLREIIYDIGGGIKGGGD-FKAIQIGGPSGGCLTKEH 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D +K+ + +G+ ++VMD +T +++ F + ESCG+C PCREGT Sbjct: 435 L-DVGLDFDSVKKYNAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTKR 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++D L E++ ++ +C LG +A P+ +K FR EE I Sbjct: 494 MLEILERIVNGEGKLEDLDTLEELAAMVKNMALCGLGKSAPLPVISTLKTFRKEYEEHIV 553 Query: 418 QYHRC 422 + H+C Sbjct: 554 E-HKC 557 >gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] Length = 491 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 147/425 (34%), Positives = 231/425 (54%), Gaps = 6/425 (1%) Query: 3 TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 Q RI T N + +++ D ++ ++ + K+L +++ +K SGLRGRGG GF Sbjct: 8 KKQLRIATRNCGFIDPENIDDYIALRGYEGLAKVLTMSPADVVDLIKRSGLRGRGGGGFP 67 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW +D Y+V NADE +PG DR ++ +PH+++E I +AIGA Sbjct: 68 TGVKWGIALANAAD-QKYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATVG 126 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ + L+ A+D+ GLLG+N G+D DI + +GAGA++CGEETAL+ Sbjct: 127 TVYIRAEYPLAIKRLKKAIDDARDYGLLGTNIFGSGFDFDIEIKYGAGAFVCGEETALIR 186 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G+P KPPFPA G + PT VNNVE+ A VP I+ GA W++G G +GTK Sbjct: 187 SMEGQRGEPVSKPPFPAQSGYWEKPTIVNNVETFANVPAIILNGADWFAGIGTATTKGTK 246 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G + +E M IT E+I GG AV GG S L + Sbjct: 247 VFALAGKIQNVGLIEVPMGITLREVIFDIGGGCP-DGKAFKAVQTGGPSGGALSYKDL-D 304 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L S +G+ ++VMD ++ F E+CG+CTPCR G+ + Sbjct: 305 VAIDYESLIARKSMMGSGGMVVMDEDDCMVSIAKFFLDFTMDETCGKCTPCRVGSKRLYE 364 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++++ KG + ++D L +S+ I+ +C LG PI + F + Q Sbjct: 365 ILDKITKGKGTQADLDRLKSLSEVIKDTALCGLGQTMPNPILSTMDTFGHEYAAHV-QDK 423 Query: 421 RCNFQ 425 +C Sbjct: 424 KCPAH 428 >gi|134301120|ref|YP_001114616.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134053820|gb|ABO51791.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 575 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 147/421 (34%), Positives = 230/421 (54%), Gaps = 6/421 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + + ++ G ++ + K L R +I VK SGLRGRGG Sbjct: 138 FYKKQLRVALRNCGLINPEDIYEYIAVGGYEALGKALTQMSRAEVIEIVKKSGLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K D +++ NADE +PG DR I+ +PH++IE I ++AIGA Sbjct: 198 GFPTGLKWEITSKQE-DEEKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L A+ + G+LG ++ D+ + +GAGA++CGEETA Sbjct: 257 DKGIVYIRAEYPLAISRLTTALRQARELGVLGKGIFGTSFNFDVRLKYGAGAFVCGEETA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S EGK+G+P KPP+PA G +G PT VNNVE+ A +P I+ RGA W++ G E ++ Sbjct: 317 LINSCEGKRGEPNYKPPYPAEEGYWGHPTCVNNVETFANIPVIMTRGAEWFASIGTEKSK 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M ITF E+I GGI AV GG S + Sbjct: 377 GTKVFALAGKINNVGLVEVPMGITFREIIFDIGGGIP-HGKKFKAVQTGGPSGGVITEKG 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L E+GS +G+ +IVMD +++ F E+CG+C P R GT Sbjct: 436 L-DTPIDYDSLLEIGSMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCVPGRIGTKR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ ++ G A +ID L +++ ++ ++C L A P+ +K+F ++ Sbjct: 495 LFEMLHKITSGKATMADIDALKQLAYMVKDSSLCGLCQTAPNPVISTMKHFWHEYLAFVE 554 Query: 418 Q 418 Sbjct: 555 D 555 >gi|330826547|ref|YP_004389850.1| NADH-quinone oxidoreductase subunit F [Alicycliphilus denitrificans K601] gi|329311919|gb|AEB86334.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus denitrificans K601] Length = 449 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 214/412 (51%), Positives = 271/412 (65%), Gaps = 11/412 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ L G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF Sbjct: 29 IYAGLNGSN-WSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ +LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G Sbjct: 88 TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLG 146 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + E +AA++E A+G LGSN + + HHG GAYICGEETALLE Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLE 206 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V P E + F +L+E G L AVIPGGSS P LPA M Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIMME 324 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWR 384 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G + +I++L V+ NI GRTICALGDAAA P++ +IK+FR Sbjct: 385 VVHRIQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFRHEF 436 >gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23] gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23] Length = 635 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NF E + Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|289665178|ref|ZP_06486759.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667375|ref|ZP_06488450.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 444 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429 >gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 616 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 155/422 (36%), Positives = 236/422 (55%), Gaps = 7/422 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 Q RI N + + D + + + + L +I+ V+ASGLRGRGG GF T Sbjct: 134 QTRIVLRNSGRINPGKIEDYLVNSGYQALARALTAMTPGEVIDVVEASGLRGRGGGGFPT 193 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW F + S Y++ NADE +PG DR ++ +PH ++E VIA +A+GA Sbjct: 194 GKKWRFAAQRKS-AEKYIICNADEGDPGAFMDRAVLEGDPHAVLEAMVIAGYAVGARHGV 252 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ + L+ A+++ A +LG + G+D D+ + +GAGA++CGEETAL++S Sbjct: 253 IYIRAEYPLAIKRLETALEQARALRVLGGDILGSGFDFDLKLKYGAGAFVCGEETALIQS 312 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G P KPPFPA GL+ PT VNNVE++A +P I+R GA W+ G G E++ GTK+ Sbjct: 313 IEGKRGMPTYKPPFPAVEGLWKRPTIVNNVETLANIPAIMRNGAQWFRGIGTESSPGTKV 372 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G V+ VE M T E+I GGI AV GG S CL + + Sbjct: 373 FALAGKVDRVGLVEVPMGTTLREIIFGVGGGI-HEGKAFKAVQTGGPSGGCLTSANL-DL 430 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DYD LK GS +G+ +IVMD ++ F ESCG+C PCR G+ + V Sbjct: 431 PIDYDSLKAAGSMMGSGGMIVMDEDDCMVDVAKFFLEFTMDESCGKCLPCRIGSKQLHLV 490 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++R+ KG + +++ + ++ + ++C LG A P+ ++NF + I R Sbjct: 491 LDRISKGEGAQEDLESIRSIAAAMATASLCGLGQTAPNPVLSTLRNFPEEYQAHIAD-KR 549 Query: 422 CN 423 C Sbjct: 550 CP 551 >gi|319761767|ref|YP_004125704.1| NADH-quinone oxidoreductase, f subunit [Alicycliphilus denitrificans BC] gi|317116328|gb|ADU98816.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus denitrificans BC] Length = 449 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 215/412 (52%), Positives = 272/412 (66%), Gaps = 11/412 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ L G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF Sbjct: 29 IYAGLNGSN-WSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ R +LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G Sbjct: 88 TGLKWSFMPRQFP-RQKHLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLG 146 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + E +AA++E A+G LGSN + + HHG GAYICGEETALLE Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLE 206 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V P E + F +L+E G L AVIPGGSS P LPA M Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIMME 324 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWR 384 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G + +I++L V+ NI GRTICALGDAAA P++ +IK+FR Sbjct: 385 VVHRIQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFRHEF 436 >gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22] gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22] Length = 635 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NF E + Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Bacteroides xylanisolvens XB1A] Length = 635 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NF E + Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|261346153|ref|ZP_05973797.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541] gi|282565806|gb|EFB71341.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541] Length = 453 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 171/409 (41%), Positives = 244/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + V++ L+ D ++N VK +GL+GRGGAGFSTG+KWS MPK + Sbjct: 27 QPVWLDEYRSKNGYKGVERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 86 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + Y + NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE+I + Sbjct: 87 MKLRYFLCNADEMEPGTYKDRLLMEELPHLLVEGMIIGAYALKAYRGYIFLRGEYIEAAK 146 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 147 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 206 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P Sbjct: 207 PFPATSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNP 266 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 267 GLWELPFGTTAREVLEDYAGGMRDGLK-LKAWQPGGAGTDFLTNDHL-DLPMDFENIAKA 324 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q Sbjct: 325 GSRLGTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 384 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +I+ L ++ + + G+T CA A P+Q IK FR E I + Sbjct: 385 EGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRKEFEAGISKK 433 >gi|397903|emb|CAA48365.1| NADH dehydrogenase I, subunit nuoF [Escherichia coli] Length = 445 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWRDEYRSKNGYEGARKRLTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G +G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ RL +G Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRRLERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425 >gi|297159513|gb|ADI09225.1| NADH dehydrogenase I chain F [Streptomyces bingchenggensis BCW-1] Length = 460 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 195/418 (46%), Positives = 256/418 (61%), Gaps = 13/418 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q ++ + ++ + + L D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 28 QSWTMETYLRHDGYEGMRRALAMAPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 86 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH LIEG VIA AI + AFIY+RGE + Sbjct: 87 KPHYLVVNADESEPGTCKDIPLLFANPHALIEGMVIACHAIRSQHAFIYLRGEVVPVLRR 146 Query: 136 LQAAVDECYASGLLGS----NSKLG----YDVDIIVHHGAGAYICGEETALLESLEGKKG 187 L AV E Y +G LG KLG D++I VH GAGAYICGEETALL+SLEG++G Sbjct: 147 LHEAVREAYEAGYLGKADARRQKLGLADLPDLEITVHAGAGAYICGEETALLDSLEGRRG 206 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPRL+PPFPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGH Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPAILTKGNEWFRSMGSEKSPGFTLYSLSGH 266 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E + IT +L++ G L PGGSS P L + +DY+G Sbjct: 267 VAAPGQYEGPLGITLRQLLDMSGG--IRPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEG 323 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEA 383 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + ++ L +++ NI G++ CALGD AA PI +K F+ E+ I C F Sbjct: 384 GKGRMEDLAKLADIADNINGKSFCALGDGAASPIFSSLKYFKEEYEQHITGGG-CPFD 440 >gi|331699307|ref|YP_004335546.1| NADH-quinone oxidoreductase subunit F [Pseudonocardia dioxanivorans CB1190] gi|326953996|gb|AEA27693.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia dioxanivorans CB1190] Length = 450 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 199/414 (48%), Positives = 262/414 (63%), Gaps = 8/414 (1%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T + L S+ + + L D +IN VK SGLRGRGGAGF TGMKW Sbjct: 20 VLTRRWQLDRSWSIDTYERTDGYTALRTALAAHPDQLINLVKDSGLRGRGGAGFPTGMKW 79 Query: 67 SFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 SF+P+ + +P YLV+NADE EPGTCKD M +PH+LIEGCVI S+AI A+ I Sbjct: 80 SFIPQGPTGAGAKPKYLVINADEGEPGTCKDIPTMMADPHSLIEGCVITSYAIRANFCAI 139 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVRGE + L+ AV+E YA G LG + G+D+DI+VH GAGAYICGEETALL+SL Sbjct: 140 YVRGEALHCIRRLRRAVEEAYAKGYLGRDILGSGFDLDIVVHAGAGAYICGEETALLDSL 199 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++GQPRLKPPFPA GLY PT VNNVE+IA VP I+ G++W+ G E + G K++ Sbjct: 200 EGRRGQPRLKPPFPATSGLYASPTVVNNVETIASVPDIVAGGSAWFRTMGTERSPGPKIY 259 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SGHV P E + T EL+E GG++ G L PGGSS P A + Sbjct: 260 SLSGHVERPGQYEAPLGTTLRELLE-LAGGMKDGIP-LKFWTPGGSSTPLFTAEHL-DVP 316 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D++G GS LGT AV + + + + A+ + + FYKHESCG+CTPCREGT W+++++ Sbjct: 317 LDFEGAAAAGSMLGTTAVQIFNETVSVPWAVMKWTEFYKHESCGKCTPCREGTYWLVQIL 376 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ER+V G ++D + ++ NI GR+ CALGD A PI IK FR + I Sbjct: 377 ERMVHGEGTPEDVDTMLDICDNILGRSFCALGDGATSPITSAIKYFRQEFLDLI 430 >gi|58582853|ref|YP_201869.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624719|ref|YP_452091.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577691|ref|YP_001914620.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427447|gb|AAW76484.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368659|dbj|BAE69817.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522143|gb|ACD60088.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 444 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429 >gi|332662318|ref|YP_004445106.1| NADH-quinone oxidoreductase subunit F [Haliscomenobacter hydrossis DSM 1100] gi|332331132|gb|AEE48233.1| NADH-quinone oxidoreductase, F subunit [Haliscomenobacter hydrossis DSM 1100] Length = 452 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 202/413 (48%), Positives = 262/413 (63%), Gaps = 16/413 (3%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + G + V+K L+ D + EVK SGLRGRGGAGF TGMKWSF+ K +D+P Sbjct: 19 IEGYIKHGGYRAVEKALKKMQPDEVTEEVKKSGLRGRGGAGFPTGMKWSFIFK-GNDKPR 77 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADESEPGT KDR +M PH LIEG + +SFA+G A+IY+RGE++ LQ Sbjct: 78 YLLCNADESEPGTFKDRLLMEKIPHLLIEGMIASSFALGVKTAYIYIRGEYMYILHILQK 137 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DE YA G LG N Y +D+ VH G GAYICGEETAL+ESLEGK+G PR+KPPFPA Sbjct: 138 AIDEAYAKGYLGENILGTTYSLDLHVHPGGGAYICGEETALIESLEGKRGNPRIKPPFPA 197 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+GCPT VNNVE+I VP I+ G Y+ G + GTKL S G++N P E Sbjct: 198 VEGLWGCPTIVNNVETICKVPFIINEGGETYANIGIGASTGTKLISACGNINKPGVYEIE 257 Query: 258 MSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLK 309 + + +E I ++CGGI+GG L A++PGGSSVP LP + +M Y+ L Sbjct: 258 LGVPVEEFIYSDEYCGGIKGG-KQLKALVPGGSSVPILPNRLITKTAKGEPRLMSYESLS 316 Query: 310 ----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 GS LG+ IV D I++ W S FY HESCGQC+PCREGTGWM +++ R+ Sbjct: 317 DGGFPTGSMLGSGGFIVFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKILHRM 376 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + +IDLL++V + IEG TIC GDA+AWP+ I++FR E + Sbjct: 377 EYGHGRMEDIDLLWDVQRKIEGNTICPFGDASAWPVAAAIRHFRDEFEWHVLH 429 >gi|188991034|ref|YP_001903044.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. B100] gi|167732794|emb|CAP50988.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris] Length = 444 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429 >gi|50121947|ref|YP_051114.1| NADH dehydrogenase I subunit F [Pectobacterium atrosepticum SCRI1043] gi|49612473|emb|CAG75923.1| NADH-quinone oxidoreductase chain F [Pectobacterium atrosepticum SCRI1043] Length = 449 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 172/409 (42%), Positives = 242/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYVAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M EPH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G +G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GTA + +D +++ L F+ ESCG CTPCR+G W ++++ L G Q Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKILRALENGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429 >gi|312200062|ref|YP_004020123.1| NADH-quinone oxidoreductase F subunit [Frankia sp. EuI1c] gi|311231398|gb|ADP84253.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EuI1c] Length = 436 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 199/407 (48%), Positives = 260/407 (63%), Gaps = 5/407 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +L G + +V G D +I VK SGLRGRGGAGF TGMKWSF+P+ +P Sbjct: 17 WTLETYAEHGGYSSVQAAFNLGPDAVIKMVKDSGLRGRGGAGFPTGMKWSFIPQ-GDGKP 75 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 HYLVVNADE EPGTCKD +M +PH+LIEG ++ASFA+ A+ A++YVRGE I L+ Sbjct: 76 HYLVVNADEGEPGTCKDAPLMMTDPHSLIEGIIVASFAVRANRAYVYVRGELIHAARRLR 135 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AV E Y +G LG+N G+D+D+++H GAGAYICGEETALL+SLEG++GQPRL+PPFP Sbjct: 136 NAVAEAYRAGYLGTNILGSGFDLDLVIHSGAGAYICGEETALLDSLEGRRGQPRLRPPFP 195 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GLY PT +NNVE+IA VP I+ G W+ G E + G K++S+SGHV P E Sbjct: 196 ATHGLYNSPTVINNVETIASVPFIVNNGVEWFRSMGTEKSPGPKIYSLSGHVTRPGQYEA 255 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M T EL+E G G L A PGGSS P L A + +D+DG+ GS LG Sbjct: 256 PMGTTLRELLELAGG--VRGGRALKAWTPGGSSTPMLTAEHL-DVPLDFDGVAAAGSLLG 312 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 TAA+++MD + D++ + RL+ FY HESCG+CTPCREGT W+++++ R+ +G R+ID Sbjct: 313 TAALMIMDDTVDMVPVVRRLTQFYAHESCGKCTPCREGTPWLVQILSRMERGQGDPRDID 372 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 L + NI GR CAL D A PI IK+F + Sbjct: 373 TLTDACDNIFGRAFCALADGAVSPIVSGIKHFPEEFAAAAKPREQAP 419 >gi|166712609|ref|ZP_02243816.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv. oryzicola BLS256] Length = 444 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 208/416 (50%), Positives = 267/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VK S LRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKVSNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429 >gi|312890391|ref|ZP_07749928.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603] gi|311297161|gb|EFQ74293.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603] Length = 453 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 202/422 (47%), Positives = 262/422 (62%), Gaps = 18/422 (4%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ G+ + S+G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ Sbjct: 11 NVPGIN--TFDVYRSKGGYAAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFL 68 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 K YLV NADESEPGT KDR +M + PH LIEG ++AS+A+GA ++IYVRGE Sbjct: 69 AK-PEGVARYLVCNADESEPGTFKDRFLMTYIPHLLIEGMIVASYALGAKVSYIYVRGEM 127 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L+ A+ E G LG N GYD+++ V G GAYICGEETALLESLEGK+G Sbjct: 128 MPQIRILEKAIAEAKNKGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGN 187 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR+KPPFPA GLYGCPT VNNVESIA V I+ G Y+ G + GTKL S SG++ Sbjct: 188 PRIKPPFPAIAGLYGCPTVVNNVESIAAVVPIINDGGEEYAKIGIGRSTGTKLISASGNI 247 Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---- 302 P E + + +E + ++CGG+ A++ GGSSVP LPA + I Sbjct: 248 KNPGIYEIELGVPVEEFLYSDEYCGGMA-NGKRFKALVAGGSSVPILPANLVTKTINQEA 306 Query: 303 --MDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 M Y+ L G+ +G+ IV D I++ W + FY HESCGQC+PCREGTG Sbjct: 307 RLMSYESLSDGGFATGTMMGSGGFIVFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTG 366 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 WM +V+ RL G + ++DLL +VSK IEG TIC LGDAAAWP+ I++FR E + Sbjct: 367 WMEKVLHRLEYGHGKMSDMDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHV 426 Query: 417 DQ 418 Sbjct: 427 TH 428 >gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] Length = 635 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLSTGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NF E + Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|290475913|ref|YP_003468808.1| NADH dehydrogenase I subunit F [Xenorhabdus bovienii SS-2004] gi|289175241|emb|CBJ82044.1| NADH dehydrogenase I chain F [Xenorhabdus bovienii SS-2004] Length = 454 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 170/406 (41%), Positives = 237/406 (58%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ D + VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 28 QPVWLDEYRSKSGYKGAEKALKGMVPDEVTTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 87 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ Sbjct: 88 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 147 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 148 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 207 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G++G PT VNNVE++ VP IL G WY G G+ + GTKL SG V P Sbjct: 208 PFPATSGVWGKPTCVNNVETLCNVPAILEYGKEWYIGLSEGKSKDAGTKLMGFSGRVKNP 267 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G A PGG+ L + MD++ + + Sbjct: 268 GVWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTVDHL-DLPMDFENIAKA 325 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +I+ L F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 326 GSRLGTALAMAVDHEINIVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIENGKGQ 385 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 386 PGDIETLEQLCRFLGPGKTFCAHAPGAMEPLQSAIKYFRDEFEAGI 431 >gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] Length = 634 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 156/423 (36%), Positives = 235/423 (55%), Gaps = 7/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFS 61 + Q + N + +SL + ++R + + + L G + +I EVK S LRGRGG GF Sbjct: 146 SQQRVVLGNSGLVDPESLEEYVARDGYFALWESLSAGSPEEVIEEVKESNLRGRGGGGFP 205 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW F+ +D YL+ NADE +PG DR ++ +P+ ++EG IA +A+GA Sbjct: 206 TGMKWEFLAGNDAD-LKYLICNADEGDPGAYMDRTLLESDPYAVLEGMTIAGYALGAEKG 264 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ E LQ A+++ +GLLG + G+D D+ + GAGA++CGEETA++ Sbjct: 265 YIYVRAEYPLAIERLQHAIEQAREAGLLGQDIFGEGFDFDLEIKKGAGAFVCGEETAMIN 324 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG +G P+ +PP+PA+ GL+ PT VNNVE+ A VP ILR GA W++ G E + GTK Sbjct: 325 SLEGGRGMPKPRPPYPADEGLWAEPTNVNNVETWANVPAILRNGAEWFADIGTEESGGTK 384 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS++G V VE + +E++ + AV GG S +P Sbjct: 385 VFSVTGDVENTGLVEVPLGTRLEEVVFEIG--GGTTGGEFKAVQTGGPSGGVIPREH-AE 441 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L E+GS +G+ +IVMD ST ++ F ESCG+C PCR GT M+ Sbjct: 442 TPIDYETLMELGSMMGSGGMIVMDESTCMVDQSRFFLEFSVDESCGKCPPCRYGTKQMLE 501 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++E + G A I L + ++E ++C LG AA P+ + F ++ Sbjct: 502 MLEGITNGAADPDVISELRSLGDSMEEMSLCGLGQTAANPVMSTLDYFEDEYRNHVED-E 560 Query: 421 RCN 423 C Sbjct: 561 ECP 563 >gi|300114497|ref|YP_003761072.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii C-113] gi|299540434|gb|ADJ28751.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii C-113] Length = 424 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 167/415 (40%), Positives = 241/415 (58%), Gaps = 7/415 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72 + L G + + + ++ ++ EVK S LRGRGGAGF TG KWSF+P Sbjct: 13 REPPDLKQYAQAGGYQGLQRAIKTLTPQEVLQEVKESNLRGRGGAGFPTGKKWSFVPMGD 72 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + RP YLV NADE EPGT KDR +M +PH L+EG ++AS+AI A A+I++R E+ Sbjct: 73 DAPRPKYLVANADEMEPGTFKDRLLMEGDPHQLLEGMILASYAIQAEVAYIFLRAEYRLA 132 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + L+ A+ E Y LG N + +++ +H AG YICGEETALL +LEGK+ PR Sbjct: 133 AQRLKKAIAEAYEMNYLGKNLLGSAFSLELHLHTSAGRYICGEETALLNALEGKRAIPRA 192 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPP+P GL+G PT VNNVE++ VP I+ RGA+WY R + GTK + SG V +P Sbjct: 193 KPPYPQVSGLWGQPTVVNNVETLCNVPHIIARGAAWYQNLSRSEDGGTKFYGASGRVKHP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M E++E+H GG++ G+ L ++PGG+S L + MDYD ++ Sbjct: 253 GAWELPMGTPIREILEEHAGGMKDGF-QLRGLLPGGASTDFLTEEHL-DVPMDYDSVQSA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT +I++D T + + L F+ ESCG CTPCR+G W+ +++ + +G Q Sbjct: 311 GSRLGTGTMIILDDRTCPVGMLCNLEHFFAQESCGWCTPCRDGLPWVEKILLGIEQGQGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L ++ + G T CA A P+Q +K FR E+ I + RC F+ Sbjct: 371 PEDLDYLTMHTRLLGPGHTFCAHAPGAMEPLQSALKYFRADFEQHI-HHQRCPFK 424 >gi|121604335|ref|YP_981664.1| NADH-quinone oxidoreductase subunit F [Polaromonas naphthalenivorans CJ2] gi|120593304|gb|ABM36743.1| NADH dehydrogenase subunit F [Polaromonas naphthalenivorans CJ2] Length = 473 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 217/418 (51%), Positives = 276/418 (66%), Gaps = 11/418 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I NL G L D SRG + + KIL + D +I EVKA GLRGRGGAGF Sbjct: 38 ILANLDGSN-WHLGDYESRGGYQALRKILGQDGGAGLTPDQVIAEVKAGGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ YLV N+DE EPGTCKDRDIM++ PH++IEG IA++A+G Sbjct: 97 TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISVG 155 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + +AA+DE A+GLLG N ++ + HG GAYICGEET LLE Sbjct: 156 YNYIHGEIFATYQRFEAALDEARAAGLLGDNILGSNFNFQLHAAHGFGAYICGEETGLLE 215 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GTK Sbjct: 216 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGTK 275 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++S+SG V P E M F +L+E G L AVIPGGSS P LPA M Sbjct: 276 IYSVSGDVELPGNYEVPMGTPFAKLLELAGG--VRKGRTLKAVIPGGSSSPVLPASSMME 333 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S +++++ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 334 CTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWR 393 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 V++R+ G+ ++ ++DLL V+ NI+GRTICALGDAAA P++ +IK++R E I + Sbjct: 394 VVDRIHNGLGRQSDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHYRHEFEAMIPK 451 >gi|212712280|ref|ZP_03320408.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM 30120] gi|212685026|gb|EEB44554.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM 30120] Length = 452 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 168/409 (41%), Positives = 244/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +++ L+ D ++N VK +GL+GRGGAGFSTG+KWS MPK + Sbjct: 26 QPVWLDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 85 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + Y + NADE EPGT KDR +M PH L+EG + ++A+ A+ +I++RGE++ Sbjct: 86 MKLRYFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAAR 145 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 146 NLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 205 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G +G PT VNNVE+I VP IL G WY G+ + GTKL SG V P Sbjct: 206 PFPASSGAWGKPTCVNNVETICNVPAILEHGDQWYINLSAGKSKDAGTKLMGFSGRVKNP 265 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 266 GLWELPFGTTAREVLEDYAGGMRDGLK-LKAWQPGGAGTDFLTNDHL-DLPMDFENIAKA 323 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ + L F+ ESCG CTPCR+G W +++++ L KG Q Sbjct: 324 GSRLGTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 383 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +I+ L ++ + + G+T CA A P+Q IK FR E I + Sbjct: 384 EGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRGEFEAGISKK 432 >gi|62632270|gb|AAX89149.1| HoxF [Allochromatium vinosum] Length = 538 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 149/419 (35%), Positives = 238/419 (56%), Gaps = 7/419 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI G + SL ++ G + + + L E ++ EV SGLRGRGG Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K+ Y+V NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 179 GYPTGLKWSTIAKMPPG-QKYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ E L+ A+ + +G LG + + ++ + GAGA++CGEETA Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEIRLGAGAFVCGEETA 297 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +GQPR +PP+PA GL+GCPT +NNVE+ A + I+R G W++ G E ++ Sbjct: 298 LMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEGSK 357 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M + ++IE GGI AV GG S C+P Sbjct: 358 GTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIP-DGRAFKAVQTGGPSGGCIPRRH 416 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK +G+ +G+ +IVMD ++ ++ R F ESCG+C PCR GT Sbjct: 417 L-DIPVDYDSLKTLGTIMGSGGLIVMDETSCMVDVA-RFMEFCMSESCGKCIPCRAGTWQ 474 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M +++ L K + ++ LL ++ + ++C LG A P+ ++ FR E ++ Sbjct: 475 MHALLDTLTKAEGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAKL 533 >gi|88602558|ref|YP_502736.1| NADH dehydrogenase (quinone) [Methanospirillum hungatei JF-1] gi|88188020|gb|ABD41017.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Methanospirillum hungatei JF-1] Length = 562 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 151/419 (36%), Positives = 236/419 (56%), Gaps = 6/419 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q + I + + + + + + G + K L D II+EVK SGLRGRGGA Sbjct: 143 FFAHQKKVILRDSGLINPEDIDEYIGIGGYFAAYKALTSMKPDAIIDEVKRSGLRGRGGA 202 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW K + ++V NADE +PG +R+ M +PH L+EG +I ++A+G Sbjct: 203 GFPAGLKWEITKKAPGE-EKFIVCNADEGDPGAYMNRNEMESDPHMLLEGMLIGAYAMGV 261 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 IY+R E+ E L A+D+ GLLG N G+D DI + GAGA++CGE TA Sbjct: 262 SEGLIYIRAEYPLAIERLMLALDQARTYGLLGKNIFNTGFDFDIRIATGAGAFVCGESTA 321 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK G+PRL+PP G++G PT +NNVE+ VP I+ +GA WYS G + N Sbjct: 322 LAASIEGKTGRPRLRPPRLTEKGVFGKPTDLNNVETWCNVPVIIAKGALWYSSIGAKGNT 381 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G V+ VE + + +I G G + + AV GG S C+P + Sbjct: 382 GTKVFSLVGKVDNIGMVEVPLGTSLHSIIYDIGNGGALGKE-VKAVQTGGPSGGCIPV-R 439 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L ++G+ +G+ ++VMD T+++ F ESCG+C PCREG Sbjct: 440 LFDTPVDFESLNQVGTMMGSGGLVVMDEDTNMVDIARYFINFASGESCGKCVPCREGLKH 499 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ R+V G +++I LL E+++ ++ ++C LG A P+ ++ F+ ++ I Sbjct: 500 MLLILNRIVAGKGTRQDIGLLRELAETVQKTSLCGLGQTAPNPVLTTMQYFKEEYDDLI 558 >gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50] gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50] Length = 661 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 148/425 (34%), Positives = 234/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + +++++ ++ G + + K+L +I + S LRGRGG Sbjct: 174 FYKKQTRLVLKNCGHIDAENINEYLAVGGYQALRKVLFTMEPSEVIQVISDSNLRGRGGG 233 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + ++ Y+V N DE +PG DR +M +PH ++EG +IA++A+GA Sbjct: 234 GFPTGYKWQQVARQA-EKIRYVVCNGDEGDPGAFMDRSVMEGDPHKMLEGMIIAAYAVGA 292 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ L+ A+ + +G LG + + I ++ GAGA++CGE +A Sbjct: 293 QEGYVYVRAEYPLAVSRLKTAIAQAEEAGFLGEDILGSDFSFHIHINRGAGAFVCGEGSA 352 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG++G PR KPP GL+ PT +NNVE+ A V I+ GA WY G E + Sbjct: 353 LTASIEGQRGMPRTKPPRTVEQGLFAKPTVLNNVETYANVSMIILNGADWYKSIGPEKSP 412 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G V +E M E++ GG++ L AV GG S CL Sbjct: 413 GTKAFALTGSVKNTGLIEVPMGTKLREIVYDIGGGLKDDIP-LKAVQIGGPSGGCLVTDD 471 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT Sbjct: 472 LE-VSLDFDSLKSKGAMIGSGGLVVMDENTCLVEVARFFMNFTQNESCGKCVPCREGTKR 530 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G ++DLL E+ + I +C LG +AA P+ +KNFR E + Sbjct: 531 MLEILERIVAGNGTLEDLDLLEELGQAITDTALCGLGKSAALPVLSTLKNFRQEYIEHVV 590 Query: 418 QYHRC 422 RC Sbjct: 591 D-KRC 594 >gi|21231955|ref|NP_637872.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767918|ref|YP_242680.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|21113686|gb|AAM41796.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573250|gb|AAY48660.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris pv. campestris str. 8004] Length = 444 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPGDVIEMVKASNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429 >gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 632 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 239/426 (56%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +Q I + + +S+ D M+RG + ++ K+L R II ++KA+GLRGRGG Sbjct: 146 FFKNQTFYIMEAIGTSECESIEDYMARGGYTSLAKVLSGMDRKEIIEQIKAAGLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW D Y+V NADE +PG +R ++ +PH+++EG +IA++ IGA Sbjct: 206 GFPTGLKWEAAYNSKGDI-KYVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTIGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ E A+++ GLLG N + ++ V GAGA++CGEETA Sbjct: 265 QKGYAYIRAEYPIAVEMFNKAIEDAKEYGLLGENILGTDFSFELYVKEGAGAFVCGEETA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR +PPFPA GL+G PT +NNVES A VP I+R G Y G E + Sbjct: 325 LLASIEGKRGVPRPRPPFPAQSGLWGKPTLINNVESYANVPKIIRDGVENYRKRGVEKSP 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T +++ CGG + A+ GG S CLP Sbjct: 385 GTKMFSVTGPLKLTGIIEIQFGTTLRYILDNICGGT-SNGQKIKAIQIGGPSGACLPEE- 442 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK +G+ +G+ ++ + +++ F K ESCG+C PCREGT Sbjct: 443 LFDLPLDYDTLKSVGAMVGSGGIVAITEDRCMVEVARFFLDFTKRESCGKCVPCREGTTQ 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ +G A +++ L ++S+ I+ ++C LG A PI +K F+ E I+ Sbjct: 503 AYNILEKFTQGKATYEDLETLEQLSEIIKTASLCGLGKTAPNPIISTLKYFKNEYIEHIE 562 Query: 418 QYHRCN 423 +C Sbjct: 563 --GKCP 566 >gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] Length = 635 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NF E + Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYNEYMEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|291618185|ref|YP_003520927.1| NuoF [Pantoea ananatis LMG 20103] gi|291153215|gb|ADD77799.1| NuoF [Pantoea ananatis LMG 20103] gi|327394578|dbj|BAK12000.1| NADH-quinone oxidoreductase chain F Nuof [Pantoea ananatis AJ13355] Length = 448 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 172/404 (42%), Positives = 240/404 (59%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ D I+ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 24 QPVWLDEYRSKNGYAGAEKALKGMAPDEIVALVKDSGLKGRGGAGFSTGLKWSLMPKDES 83 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 84 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 143 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 144 HLRRAIAEATEAGLLGKNILGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 203 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE+++ VP IL G WY G + ++ GTKL SG V P Sbjct: 204 PFPASAGVWGKPTCVNNVETLSNVPAILANGVEWYQGLSKSDDAGTKLMGFSGRVKNPGV 263 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E IT E++E + GG+R G A PGG+ L Q M++ + + GS Sbjct: 264 WELPFGITAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 321 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 322 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKKGQPG 381 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 382 DIETLEQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425 >gi|317052150|ref|YP_004113266.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5] gi|316947234|gb|ADU66710.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5] Length = 572 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 146/426 (34%), Positives = 232/426 (54%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q + + N + +++ D ++ G + + L E + + + + SGLRGRGG Sbjct: 119 FFQRQHKLVLENSGLIDPENIDDYIAAGGYSALALALTEMTPEEVCDAITKSGLRGRGGG 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW + K + ++V N DE +PG DR +M +PH L+EG IA +A GA Sbjct: 179 GYPTGVKWQLVRKAPGE-RKFVVANGDEGDPGAYMDRTLMESDPHRLLEGMAIAGYASGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 ++YVRGE+ E L+ A+ + +G+LG+ + + V GAGA++CGEETA Sbjct: 238 QHGYLYVRGEYPVAAERLRKAIKDAQKAGILGNQVLGSRFSFTLEVRIGAGAFVCGEETA 297 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ GK+GQP +PP+PA GL+GCPT +NNVE+ V I+R G ++ G +R Sbjct: 298 LMASITGKRGQPVPRPPYPAQRGLWGCPTLINNVETFGSVANIVRDGWEAFAAIGTPKSR 357 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V +E M I+ E++ GG+ A GG S C+P Sbjct: 358 GTKIFALCGEVENTGLIEVPMGISLREVVFDIGGGLG-EGKTFKAAQTGGPSGGCIPIQH 416 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MDY+ L+E+GS +G+ +IVM ++T ++ F ESCG+CTPCR GT Sbjct: 417 L-DTPMDYESLQELGSIMGSGGLIVMGQNTCMVDVAKFFMEFSLDESCGKCTPCRAGTAQ 475 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R++ + G A ++D L + + ++C LG A P+ G ++ FR I+ Sbjct: 476 LYRLLTNIGNGSATIEDMDHLENLCAMVRDTSLCGLGITAPNPVLGTLQYFRDEYLAHIE 535 Query: 418 QYHRCN 423 + H C Sbjct: 536 KRH-CP 540 >gi|120402878|ref|YP_952707.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii PYR-1] gi|119955696|gb|ABM12701.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii PYR-1] Length = 441 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 212/415 (51%), Positives = 274/415 (66%), Gaps = 8/415 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q SL G + +D+ L D +I VK SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 QPWSLDTYRRHGGYQALDRALAMTPDQVITTVKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75 Query: 76 R---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 PHYLV+NADESEPGTCKD +M PH L+EG +IA++AI AH AFIY+RGE + Sbjct: 76 PAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E YA+G LGS+ G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYAAGHLGSDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP +L G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPVLLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+E + GG+R G + L PGGSS P L A + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAGHE-LKFWTPGGSSTPLLTAEHL-DVPLDYEGMAGV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL G Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGAGT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR-CNFQ 425 + ++D L ++S NI G++ CALGD AA PI +K+FR E +D + C F Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRAEYEAHLDPVGKGCPFD 427 >gi|240169665|ref|ZP_04748324.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone oxidoreductase chain F) [Mycobacterium kansasii ATCC 12478] Length = 443 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 205/413 (49%), Positives = 265/413 (64%), Gaps = 8/413 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP---KVC 73 +L + + K L D +I VK SGLRGRGGAGF+TG KWSF+P K Sbjct: 22 SWTLETYRRHDGYRAMHKALSMDPDAVIGTVKDSGLRGRGGAGFATGTKWSFIPQGDKGA 81 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + +PHYLVVNADESEPGTCKD +M PH L+EG +IA++AI AH AFIYVRGE + Sbjct: 82 AAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGIIIAAYAIRAHHAFIYVRGEVLPVL 141 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 LQ AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+ Sbjct: 142 RRLQNAVAEAYAAGYLGRNIAGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 201 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLYGCPT +NNVE+IA VP I+ G W+ G E + G L+S+SGHV P Sbjct: 202 PPFPAVAGLYGCPTVINNVETIASVPAIILHGVDWFRSMGTEKSPGFTLYSLSGHVTRPG 261 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ +G Sbjct: 262 QYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAVG 318 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 319 SMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGTH 378 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +ID L ++S +I G+ CALGD AA P+ I FR + + C F Sbjct: 379 EDIDKLLDISDSILGKAFCALGDGAASPVMSSINYFRDEYVAHV-EGGGCPFD 430 >gi|197285616|ref|YP_002151488.1| NADH dehydrogenase I subunit F [Proteus mirabilis HI4320] gi|227356119|ref|ZP_03840509.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906] gi|194683103|emb|CAR43660.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis HI4320] gi|227163764|gb|EEI48676.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906] Length = 454 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 169/409 (41%), Positives = 234/409 (57%), Gaps = 7/409 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 Q L + ++ + +K L+ D + +EVK +GL+GRGGAGFSTG+KWS MPK Sbjct: 27 RQPVWLDEYRAKNGYKAAEKALKSMAPDEVTSEVKDAGLKGRGGAGFSTGLKWSLMPKDE 86 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 S Y++ NADE EPGT KDR +M PH LIEG +I + A+ A+ +I++RGE+I Sbjct: 87 SMNIRYILCNADEMEPGTYKDRLLMEELPHLLIEGMIIGAHALKAYRGYIFLRGEYIEAA 146 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + L+ A++E A+G LG N G D ++ VH GAG YICGEETAL+ SLEG++ PR K Sbjct: 147 KHLRHAIEEAKAAGFLGKNIFGSGIDFELFVHTGAGRYICGEETALINSLEGRRANPRSK 206 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR--GTKLFSISGHVNY 250 PPFPA G +G PT VNNVE++ VP I+ G WY G + GTKL SG V Y Sbjct: 207 PPFPATSGAWGKPTCVNNVETLCNVPAIIEHGKDWYIGLSAGKSPDAGTKLMGFSGRVKY 266 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E T E++E + GG+R G L A PGG+ L + MD+ + + Sbjct: 267 PGLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEDHL-DLPMDFGTIAK 324 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGTA + +D +++ L F+ ESCG CTPCR+G W + ++ + KG Sbjct: 325 AGSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVEILRAIEKGQG 384 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +I+ L + +++ G T CA A P+Q IK FR E I Q Sbjct: 385 RPGDIETLEHLCRSLSPGHTFCAHAPGAVEPLQSAIKYFREEFEAGIIQ 433 >gi|325921406|ref|ZP_08183263.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865] gi|325548164|gb|EGD19161.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865] Length = 444 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ +I VKAS LRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E+ + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFENFELALVDAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G W+ G + N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L V+PGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRTLKGVVPGGVSMPVLKADQVAG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +G+GLG+ A++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429 >gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] Length = 635 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 151/425 (35%), Positives = 234/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + +L K + +I+ +K SGLRGRGG Sbjct: 149 FYRKQMRIALRNCGFIDPENIEEYIALDGYMALADSLLHKKPEEVIDVIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K +D Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGLKWEFANKQKADM-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ + L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 268 PKGLVYIRAEYPLAIQRLKIAIAQAREYGLLGKNIFGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W+S G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAEAGYLGKPTNVNNVETLANIPIILTKGAEWFSSIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLAEGSMMGSGGMIVMDEDDCMVSVSRFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G +++D L + K I+ +C LG + P+ + NF E + Sbjct: 506 LLEMLNKITEGRGTMKDLDALSTLGKVIKDTALCGLGQTSPNPVLSTLNNFYDEYVEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|289641422|ref|ZP_06473586.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca glomerata] gi|289508758|gb|EFD29693.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca glomerata] Length = 442 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 207/398 (52%), Positives = 268/398 (67%), Gaps = 5/398 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L+ S + + + LE G D II VK SGLRGRGGAGF TGMKWSF+P+ D Sbjct: 15 ESWTLAVYESTDGYQALRQALELGPDDIIKIVKDSGLRGRGGAGFPTGMKWSFIPQ-GDD 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 RPHYLV+NADE EPGTCKD +M +PH+L+EG +IA++A+ AH AFIY+RGE + Sbjct: 74 RPHYLVINADEGEPGTCKDAPLMTADPHSLVEGIIIAAYAVRAHRAFIYLRGELVHCGRR 133 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+AAV E Y +G LG + G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 134 LRAAVAEAYRAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPP 193 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVE+IA VP ++RRG W+ GRE + G K++S+SGHV P Sbjct: 194 FPATHGLYASPTVVNNVETIATVPFVIRRGVEWFRSMGRERSPGPKIYSLSGHVTRPGQY 253 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T EL+E G G L A PGGSS P L A + +D++G+ E GS Sbjct: 254 EAPMGTTLAELLELAGG--IRGGRRLKAWTPGGSSTPMLTADHL-DVPLDFEGVVEAGSL 310 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGTAA+++MD + D++K + RL+ FY HESCG+CTPCREGT WM++++ RL +G + Sbjct: 311 LGTAAIMIMDETVDMLKVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRLERGQGDAED 370 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +D L + NI GR CAL D A PI IK FR Sbjct: 371 VDTLVDACDNIFGRAFCALADGATSPIVSGIKFFRDEF 408 >gi|171463531|ref|YP_001797644.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193069|gb|ACB44030.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 432 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 203/418 (48%), Positives = 264/418 (63%), Gaps = 8/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65 I L G L D SRG + + +++ D +I E+KAS LRGRGGAGF TG+K Sbjct: 13 ILAGLNG-DNWCLKDYESRGGYQQLRRLINDKVAPDVVIAELKASSLRGRGGAGFPTGLK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 WSFMP+ YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G + Y+ Sbjct: 72 WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITVGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + A++E A+G LG + + G GAYICGEETALLESLEG Sbjct: 131 HGEIFEVYSRFEEALEEARAAGYLGDKILGSDFSFQLHASPGWGAYICGEETALLESLEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL G Y G+ NN GTK+FSI Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLDLGKLNNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V +P E + F EL++ G L AVIPGGSS P +P QM MD Sbjct: 251 SGDVVHPGNYEIPLGTPFAELLKLAGGM--RDGKALKAVIPGGSSSPVVPGAQMMELTMD 308 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + GS LG+ AVIVM+ + +++A+ RLS FY ESCGQCTPCREGTGW+ R++ R Sbjct: 309 YDSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHR 368 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + G + ++DLL +V+ NI+GRTICALGDAAA P++G++K++ + ++ RC Sbjct: 369 IEHGEGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHYMDEFVYHV-EHKRC 425 >gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] Length = 635 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 149/425 (35%), Positives = 232/425 (54%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++ + + +L K + +I+ +K SGLRGRGG Sbjct: 149 FYRKQMRIALRNCGFIDPENIEEYIALDGYMALADSLLHKKPEEVIDVIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW F K +D Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGKKWEFAHKQQADM-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ + L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 268 PKGLVYIRAEYPLAIQRLKIAIAQAREYGLLGKNIFGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +G W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAEAGYLGKPTNVNNVETLANIPIILTKGVEWFASIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLAEGSMMGSGGMIVMDEDDCMVSVSRFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G +++D L + K I+ +C LG + P+ + NF E + Sbjct: 506 LLELLNKITEGRGTMKDLDALSTLGKVIKDTALCGLGQTSPNPVLSTLNNFYDEYVEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|317492619|ref|ZP_07951046.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919369|gb|EFV40701.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 453 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 171/406 (42%), Positives = 244/406 (60%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +D ++N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 27 QPVWLDEYRSKSGYQGAEKALKGMAQDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 86 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +IA+FA+ ++ +I++RGE++ Sbjct: 87 MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIAAFALKSYRGYIFLRGEYVEAAV 146 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 147 NLRKAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 206 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V P Sbjct: 207 PFPASSGVWGKPTCVNNVETLCNVPAIIEHGVDWYKGLSAGKSEDAGTKLMGFSGRVKNP 266 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD+ + + Sbjct: 267 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTGDHL-DLPMDFASIGKA 324 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 325 GSRLGTALAMAVDNEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 384 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ +++ G+T CA A P+Q IK FR E I Sbjct: 385 PGDIETLEQLCRHLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 430 >gi|94968339|ref|YP_590387.1| NADH-quinone oxidoreductase, F subunit [Candidatus Koribacter versatilis Ellin345] gi|94550389|gb|ABF40313.1| NADH dehydrogenase subunit F [Candidatus Koribacter versatilis Ellin345] Length = 439 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 191/422 (45%), Positives = 259/422 (61%), Gaps = 5/422 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+ ++ ++ +G + + + V K L D IINEVKAS LRGRGGAGF TG Sbjct: 9 DEVKVISSRWGKGATDIDRYLELDGYKAVQKALTMTPDAIINEVKASNLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+PK S +P Y++ N DESEPGTCKDR I H+PH +IEG +IA A+GA A+I Sbjct: 69 LKWSFVPK-ESAKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAKSAYI 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE+ +Q A+ + YA G +G N G D D+ H GAGAY GEE+AL+ESL Sbjct: 128 YLRGEYRYLSIIMQKAIADAYAKGFIGKNIFGSGKDFDVYWHGGAGAYEVGEESALMESL 187 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G PR++PPFPA VGL+G PT +NN E++A VP IL G Y+ G N GT+LF Sbjct: 188 EGKRGIPRIRPPFPAVVGLWGGPTVINNAETLAAVPAILLMGGQKYADLGTPRNGGTRLF 247 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG++ P E M ++I + G G L AV+PGGSS P L A ++ Sbjct: 248 CLSGNLEKPGVYELPMGYNLKKMIYEVGG-GIQGGRGLKAVVPGGSSTPVLTADEI-DIA 305 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D + + GS LG+ V+V+D T I+K R FY+HESCG C PCREGT W+ + + Sbjct: 306 MDFDSVMKAGSMLGSGGVVVLDDRTCIVKFALRTIKFYQHESCGWCIPCREGTDWLKKTL 365 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R G K++ID + ++ N+ GRT C LGDAAA P ++ FR E+ + + C Sbjct: 366 TRFHAGGGIKKDIDNIKYLADNMLGRTFCPLGDAAAMPTIAFVEKFRKEFEDHL-EGRPC 424 Query: 423 NF 424 F Sbjct: 425 PF 426 >gi|169629225|ref|YP_001702874.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium abscessus ATCC 19977] gi|169241192|emb|CAM62220.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium abscessus] Length = 434 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 206/411 (50%), Positives = 264/411 (64%), Gaps = 7/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + G + + L D +I VK +GLRGRGGAGF TG KWSF+P+ Sbjct: 18 DAWTLDGYLRHGGYRGLRTALGMDPDAVIALVKEAGLRGRGGAGFPTGAKWSFIPQ-GDG 76 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD +M PHTLIEG VIA+FAI A AFIYVRGE I Sbjct: 77 KPHYLVVNADESEPGTCKDIPLMLATPHTLIEGIVIAAFAIRASQAFIYVRGEVISVIRR 136 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AAV + Y +G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 137 LHAAVAQAYKAGYLGRNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 196 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVESIA VP ILRRGA W+ G E + G L+S+SGHV P Sbjct: 197 FPAVAGLYASPTVVNNVESIASVPVILRRGAEWFRTMGTEKSPGFTLYSLSGHVRTPGQY 256 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + +T +L+E G L PGGSS P A Q+ +DY+G+ GS Sbjct: 257 EAPLGVTLRQLLELAGG--VRDGRALKFWTPGGSSTPLFTAEQL-DVPLDYEGVSAAGSM 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W++R+++RL G + + Sbjct: 314 LGTKALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVRILQRLESGEGKAED 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L ++S + G++ CALGD AA PI +K FR E +D C F Sbjct: 374 LDKLLDISDIVLGKSFCALGDGAASPIMSSLKYFRTEYEAHLDNG--CPFD 422 >gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC 43184] gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC 43184] Length = 561 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 148/426 (34%), Positives = 225/426 (52%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + + L E + +I E+ SGLRGRGG Sbjct: 75 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGRALTEMTPESVIKEIMDSGLRGRGGG 134 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW KV + Y+V NADE +PG DR I+ +PH+++E I + GA Sbjct: 135 GFPTGLKWQITRKVKAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 193 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 194 TKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 253 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ A VP IL +GA W+S G E ++ Sbjct: 254 LIHSMEGLRGEATVKPPFPSEQGYKGCPTNVNNVETYANVPVILLKGAEWFSSIGTEKSK 313 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E + GG AV GG S CL Sbjct: 314 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 372 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L GS +G+ +IVMD ++ F ESCG+C PCR G Sbjct: 373 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 431 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++++ G +++ L ++ I+ +C LG + P+ + NF + Sbjct: 432 LHEMLQKITSGNGTIEDLERLRNLAGVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVK 491 Query: 418 QYHRCN 423 + RC Sbjct: 492 E-KRCP 496 >gi|190575273|ref|YP_001973118.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia K279a] gi|190013195|emb|CAQ46828.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia K279a] Length = 446 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 205/420 (48%), Positives = 265/420 (63%), Gaps = 8/420 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ + +I VKASGLRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ VP I+R G W+ G N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 FS+SG V E + F +L+E G L IPGG S+P L A +++ Sbjct: 256 CFSVSGCVQNGGNFEVPLGTKFHDLLEMAGG--LRPGRTLKGAIPGGVSMPVLTAAELKD 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD ++ +GSGLG+ A++V+D S +K R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LPMDYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 374 VLERIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433 >gi|259907931|ref|YP_002648287.1| NADH dehydrogenase I subunit F [Erwinia pyrifoliae Ep1/96] gi|224963553|emb|CAX55043.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae Ep1/96] gi|283477812|emb|CAY73728.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae DSM 12163] Length = 446 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 169/404 (41%), Positives = 240/404 (59%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVFLEEYRSKNGYAGAEKALKSMAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDAS 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE+++ VP IL G WY G + GTK+ SG V P Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISTSEDAGTKMMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E++ GG+R G A PGG+ L Q M++ + + GS Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E + Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423 >gi|145225065|ref|YP_001135743.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum PYR-GCK] gi|145217551|gb|ABP46955.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum PYR-GCK] Length = 438 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 205/414 (49%), Positives = 273/414 (65%), Gaps = 9/414 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72 Q ++ + G + +++ L D +I VK SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 QPWTMDTYIRHGGYQALERALAMSPDDVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + +PHYLV+NADESEPGTCKD +M PH L+EG +IA++AI A+ AFIY+RGE + Sbjct: 76 AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRANHAFIYLRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E YA+G LG + G+D+++ VH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELTVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+ + GG+R G + L PGGSS P L A + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELL-DYAGGVRAGHE-LKFWTPGGSSTPLLTADHL-DVPLDYEGMAGV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL G Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++D L ++S NI G++ CALGD AA PI +K+FR E + + C F Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL--GNACPFD 424 >gi|158340818|ref|YP_001521986.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F, putative [Acaryochloris marina MBIC11017] gi|158311059|gb|ABW32672.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F, putative [Acaryochloris marina MBIC11017] Length = 551 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 144/411 (35%), Positives = 244/411 (59%), Gaps = 6/411 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62 + N + K + D M++ + + + L + +I+++ SGLRGRGG G+ T Sbjct: 130 QHPIVLENSGHIDPKEIKDYMAQKGYLALTQALYDMTPSDVIDQITQSGLRGRGGGGYPT 189 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWS + K+ Y++ N DE +PG DR ++ +PH ++EG IA++A+GA+ + Sbjct: 190 GLKWSTVAKMPPG-QKYVICNGDEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGANQGY 248 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE+ L+ A+ + GLLGS + +D I + GAGA++CGEETAL+ S Sbjct: 249 IYIRGEYPLAINHLETALRQARKQGLLGSQIFESPFDFRIDIRIGAGAFVCGEETALMAS 308 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G P +PP+PA GL+GCPT +NNVE+ A + I+R GA W+ G G + ++GTK+ Sbjct: 309 IEGKRGLPHPRPPYPAESGLWGCPTLINNVETFANIAPIIRNGAEWFVGIGTDKSKGTKV 368 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS++G + +E M + +++E+ GG+ G + AV GG S C+PA Sbjct: 369 FSLAGKIQNTGLIEVPMGTSLRQIVEQMGGGVLDG--SAKAVQTGGPSGGCIPA-HAFDT 425 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ L +GS +G+ +IVMD++T+++ F ESCG+C PCR GT + ++ Sbjct: 426 PVDYESLTRLGSIMGSGGMIVMDQATNMVDVARFFMEFCMEESCGKCVPCRAGTVQLYQL 485 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ G A+K +++ L ++ + ++ ++C LG +A PI ++ F+ Sbjct: 486 LTKICDGKARKEDLESLNQLCEMVKDTSLCGLGKSAPNPILSTLRFFKDEY 536 >gi|315445434|ref|YP_004078313.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1] gi|315263737|gb|ADU00479.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1] Length = 438 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 207/414 (50%), Positives = 274/414 (66%), Gaps = 9/414 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72 Q ++ + G + +++ L D +I VK SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 QPWTMDTYIRHGGYQALERALAMSPDEVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + +PHYLV+NADESEPGTCKD +M PH L+EG +IA++AI AH AFIY+RGE + Sbjct: 76 AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E YA+G LG + G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+ + GG+R G + L PGGSS P L A + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELL-DYAGGVRAGHE-LKFWTPGGSSTPLLTADHL-DVPLDYEGMAGV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL G Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++D L ++S NI G++ CALGD AA PI +K+FR E + + C F Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL--GNACPFD 424 >gi|194366599|ref|YP_002029209.1| NADH-quinone oxidoreductase subunit F [Stenotrophomonas maltophilia R551-3] gi|194349403|gb|ACF52526.1| NADH-quinone oxidoreductase, F subunit [Stenotrophomonas maltophilia R551-3] Length = 446 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 205/420 (48%), Positives = 266/420 (63%), Gaps = 8/420 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ + +I VKASGLRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ VP I+R G W+ G N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 FS+SG V E + TF +L++ G L IPGG S+P L A +++ Sbjct: 256 CFSVSGCVQNGGNFEVPLGTTFHDLLQMAGG--LRPGRTLKGAIPGGVSMPVLTAAELKD 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD ++ +GSGLG+ A++V+D S +K R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LPMDYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 374 VLERIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433 >gi|189425850|ref|YP_001953027.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] gi|189422109|gb|ACD96507.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] Length = 572 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 241/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + +SL + RG ++++ + L E D + + V SGLRGRGG Sbjct: 119 FFRCQTRLVLANSGKIDPESLDQYIGRGGYESLAQALHEMTPDDVCSGVVQSGLRGRGGG 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW + K S ++V N DE +PG DR +M +PH ++EG IA +AIGA Sbjct: 179 GYPTGLKWQLVRKS-SGSRKFVVANGDEGDPGAYMDRSLMESDPHRILEGMAIAGYAIGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 ++YVRGE+ + L+ A+ + +GLLGS + I + GAGA++CGEETA Sbjct: 238 EQGYVYVRGEYPVAAQRLRKAIKDAERAGLLGSRVLDSSFSFRIDIRIGAGAFVCGEETA 297 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+ G++GQPR++PP+PA GL+GCPT +NNVE+ +P+I G ++ G +R Sbjct: 298 LLASIMGRRGQPRIRPPYPAEAGLWGCPTLINNVETFGNIPSIFSIGPQAFNAIGNGKSR 357 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F++ G V +E M I+ E++ + GG+ G A GG S C+PA + Sbjct: 358 GTKVFALCGEVVNNGLIEVPMGISLREIVFEIGGGLANGA-AFKAAQTGGPSGGCIPAEK 416 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L+ +GS +G+ +IVM + ++ F ESCG+C PCR GT Sbjct: 417 L-DTPVDYENLQALGSIMGSGGLIVMGEQSCMVDVARFFMEFCLDESCGKCVPCRTGTVE 475 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R++ R+ G A +R++ L ++ + ++ ++C LG AA P+ ++ FR E + Sbjct: 476 IYRLLSRICNGSASQRDLQTLEQLCRMVKDTSLCGLGAAAPNPVLSTLRWFRAEYEAHV- 534 Query: 418 QYHRCN 423 RC Sbjct: 535 GGRRCP 540 >gi|326382758|ref|ZP_08204448.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL B-59395] gi|326198348|gb|EGD55532.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL B-59395] Length = 459 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 198/418 (47%), Positives = 265/418 (63%), Gaps = 11/418 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-- 73 + +L + + + + L D +I +VKASGLRGRGGAGF G KWSF+P+ Sbjct: 27 ESWTLRSYLRQNGYQGLKSALRLSPDEVIEQVKASGLRGRGGAGFPVGTKWSFIPQGPRP 86 Query: 74 --SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 +D PHYLVVNADESEPGTCKD +M PHTLIEG +IA++AI AH AFIYVRGE Sbjct: 87 GGADTPHYLVVNADESEPGTCKDMPLMLASPHTLIEGVIIAAYAIRAHHAFIYVRGEVAG 146 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 L+ AVDE Y++GL+G + G+ +D++VH GAGAYICGEETALL+SLEG++GQPR Sbjct: 147 VIRRLRTAVDEAYSAGLIGRDIFGSGFGMDLVVHAGAGAYICGEETALLDSLEGRRGQPR 206 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 L+PPFPA GLY PT VNNVESIA VP+I+R G+ W+ FG E + G ++S+SGHV Sbjct: 207 LRPPFPAVAGLYASPTVVNNVESIASVPSIMRNGSDWFREFGTEKSPGFTMYSLSGHVAR 266 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E + IT EL++ G L PGGSS P A + +DY+G+ Sbjct: 267 PGQYEAPLGITLRELLDLAGG--VRAGHQLKFWTPGGSSTPMFTAEHL-DVPLDYEGVGG 323 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT A+ + D + +++A+ R + FY HESCG+CTPCREGT WM+++M RL G Sbjct: 324 AGSMLGTKAIQIFDETVCVVRAVLRWTEFYAHESCGKCTPCREGTYWMVQMMRRLEAGEG 383 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI---DQYHRCNFQ 425 + ++ L E++ ++ G++ CALGDA+ PI + +FR D C F Sbjct: 384 TEDDLTTLTEITDSVVGKSFCALGDASGAPITSSLAHFRDEYLAHFPHDDHPGGCPFD 441 >gi|254522409|ref|ZP_05134464.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp. SKA14] gi|219720000|gb|EED38525.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp. SKA14] Length = 446 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 209/420 (49%), Positives = 268/420 (63%), Gaps = 8/420 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 ++T L+ S + G + + KILE+ + +I VKASGLRGRGGAGF T Sbjct: 18 HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK + Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ + Sbjct: 78 GLKWSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + YA+G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ VP I+R G W+ G N G K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 FS+SG V E + TFD+L+E G L IPGG S+P L A +++G Sbjct: 256 CFSVSGCVQNGGNFEVPLGTTFDDLLEMAGG--LRPGRTLKGAIPGGVSMPVLTAAELKG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD ++ +GSGLG+ AV+V+D S +K R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LPMDYDTIRALGSGLGSGAVVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I H Sbjct: 374 VLERIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433 >gi|163846760|ref|YP_001634804.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl] gi|222524574|ref|YP_002569045.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl] gi|163668049|gb|ABY34415.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl] gi|222448453|gb|ACM52719.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl] Length = 535 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 144/419 (34%), Positives = 239/419 (57%), Gaps = 6/419 (1%) Query: 1 MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 T Q + + + + + D ++ G + + ++ + +I + SGLRGRGGA Sbjct: 112 FFTRQYPIVLRHSGRINPERIEDYIAAGGYRMLYHVIHDLTPAEVIQMITRSGLRGRGGA 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K + +++ NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 172 GYPTGLKWATVAKSPGE-RKFVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVRGE+ E LQ A+ + GLLG+ + G++ + + GAGA++CGEETA Sbjct: 231 EQGFIYVRGEYPLAIERLQKAIVQARRLGLLGAQIFESGFNFRVDIRVGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++GQPR +PP+PA GL+G PT +NNVE+ A + I+ G W+ G E ++ Sbjct: 291 LIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANISAIIEHGPEWFRQIGTEQSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M IT E++E G + AV GG S C+PA Sbjct: 351 GTKVFALTGKIRNTGLIEVPMGITLREIVEDIGDGTP-DGTPVKAVQTGGPSGGCIPAS- 408 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L +GS +G+ ++VMD T+++ F K ESCG+C PCR GT Sbjct: 409 LFDTPVDYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEFCKDESCGKCIPCRVGTVQ 468 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++ +L G A + ++ + + + + ++C LG +A P+ + FR E+ I Sbjct: 469 LFNLLTKLRNGQAGESDLQTIEALCELMRETSLCGLGQSAPNPVLSTLHYFRHEYEQLI 527 >gi|332883539|gb|EGK03822.1| NADH oxidoreductase, F subunit [Dysgonomonas mossii DSM 22836] Length = 451 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 195/411 (47%), Positives = 267/411 (64%), Gaps = 16/411 (3%) Query: 21 SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G + +V+K L+ D ++ EVK SG+RGRGGAGF G+KWSF+ K S +P + Sbjct: 19 EVYRKNGGYASVEKALKTMTPDEVVEEVKTSGVRGRGGAGFPMGLKWSFIDK-KSGKPRH 77 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 LVVNADESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++ + L+ A Sbjct: 78 LVVNADESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKA 137 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + E YA+G LG N GY++D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA Sbjct: 138 IKEAYANGWLGKNILGTGYNLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNNVESI+ V I+ G + Y+ G + GTKL S SGH+ P E + Sbjct: 198 SGLWGEPTVVNNVESISTVSWIINNGGAEYAKIGVGKSTGTKLMSASGHIKNPGVYEIEL 257 Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDGLKE 310 +T DE +++CGG+ L AVIPGG SVP LP + ++ Y+ L + Sbjct: 258 GLTVDEFFNSDEYCGGMLDDRP-LKAVIPGGCSVPILPPQYIFKTANGEDRLISYESLAD 316 Query: 311 ----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 GS LG+ IV + + I++ W S F+ HESCGQC+PCREGTGWM +++ R+ Sbjct: 317 GGFVTGSSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIE 376 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 G ++ +IDLL+ + IEG TIC LGDAA+WP+ I++FR E + Sbjct: 377 TGQGREEDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHVR 427 >gi|294637175|ref|ZP_06715483.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685] gi|291089639|gb|EFE22200.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685] Length = 448 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 169/408 (41%), Positives = 243/408 (59%), Gaps = 7/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + ++ L+ +D ++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRAKNGYQAAERALKGMAQDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIGAYALKAYRGYIFLRGEYVAAAH 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D D+ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIEEARAAGLLGKNILGSGFDFDLFVHTGAGRYICGEETALINSLEGRRANPRAKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P Sbjct: 202 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNP 261 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD+ + + Sbjct: 262 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEAHL-DLPMDFASIGKA 319 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 GSRLGTALAMAVDHEVNMVSLLCNLESFFARESCGWCTPCRDGLPWGLKILRALERGEGQ 379 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 380 PGDIETLEQLCRLLAPGHTFCAHAPGAVEPLQSAIKYFRDEFEAGIAR 427 >gi|255535800|ref|YP_003096171.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium 3519-10] gi|255341996|gb|ACU08109.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium 3519-10] Length = 467 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 211/411 (51%), Positives = 268/411 (65%), Gaps = 15/411 (3%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 +G +D VDK L+ D I+ EVK SGLRGRGGAGF TGMKWSF+ K P YL Sbjct: 35 DVYRRQGGYDAVDKALKMTPDVIVEEVKTSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYL 93 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 VVNADESEPGT KDR +M PH LIEG +I+S+A+GA+ A+IY+RGE+ + L+ A+ Sbjct: 94 VVNADESEPGTFKDRYLMEFLPHLLIEGMIISSYALGANTAYIYIRGEYSWIPDILEQAI 153 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 +E A+G LG N GYD++I VH GAGAYICGEETALLESLEGK+G PRLKPPFPA Sbjct: 154 NEAKAAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESLEGKRGNPRLKPPFPAVK 213 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+ PT VNNVE+IA V I+ G + Y+ G + GTKL S G++N P E M+ Sbjct: 214 GLWESPTVVNNVETIAAVVPIMNIGGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMT 273 Query: 260 ITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLK-- 309 IT +E I ++CGGI G L A IPGGSSVP +PA + I M+Y+ L Sbjct: 274 ITVEEFIYSDEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTINGEPRYMNYESLADG 332 Query: 310 --EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 G+ +G+ IV+D ++K L+ FY HESCGQCTPCREGT WM R+++ + Sbjct: 333 GFATGTMMGSGGFIVLDEDQCVVKHTMSLAHFYAHESCGQCTPCREGTPWMYRILKNIET 392 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E ID Sbjct: 393 GKGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHIDN 443 >gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a] gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a] Length = 489 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 3 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 62 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 63 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 121 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 122 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 181 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 182 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 241 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 242 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 300 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 301 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 359 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NF E + Sbjct: 360 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 419 Query: 418 QYHRC 422 C Sbjct: 420 D-KTC 423 >gi|22125529|ref|NP_668952.1| NADH dehydrogenase I subunit F [Yersinia pestis KIM 10] gi|45442151|ref|NP_993690.1| NADH dehydrogenase I subunit F [Yersinia pestis biovar Microtus str. 91001] gi|108808038|ref|YP_651954.1| NADH dehydrogenase I subunit F [Yersinia pestis Antiqua] gi|108812308|ref|YP_648075.1| NADH dehydrogenase I subunit F [Yersinia pestis Nepal516] gi|145599241|ref|YP_001163317.1| NADH dehydrogenase I subunit F [Yersinia pestis Pestoides F] gi|149365543|ref|ZP_01887578.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125] gi|153948766|ref|YP_001400436.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP 31758] gi|162418531|ref|YP_001606301.1| NADH dehydrogenase I subunit F [Yersinia pestis Angola] gi|165925465|ref|ZP_02221297.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937656|ref|ZP_02226218.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008538|ref|ZP_02229436.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213813|ref|ZP_02239848.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399380|ref|ZP_02304904.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422281|ref|ZP_02314034.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424755|ref|ZP_02316508.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023805|ref|YP_001720310.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis YPIII] gi|218929637|ref|YP_002347512.1| NADH dehydrogenase I subunit F [Yersinia pestis CO92] gi|229838093|ref|ZP_04458252.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895292|ref|ZP_04510466.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides A] gi|229898653|ref|ZP_04513798.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. India 195] gi|229902652|ref|ZP_04517769.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516] gi|270490166|ref|ZP_06207240.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27] gi|294504365|ref|YP_003568427.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003] gi|21958428|gb|AAM85203.1|AE013766_6 NADH dehydrogenase I chain F [Yersinia pestis KIM 10] gi|45437015|gb|AAS62567.1| NADH dehydrogenase I chain F [Yersinia pestis biovar Microtus str. 91001] gi|108775956|gb|ABG18475.1| NADH dehydrogenase I chain F [Yersinia pestis Nepal516] gi|108779951|gb|ABG14009.1| NADH dehydrogenase I chain F [Yersinia pestis Antiqua] gi|115348248|emb|CAL21176.1| NADH dehydrogenase I chain F [Yersinia pestis CO92] gi|145210937|gb|ABP40344.1| NADH dehydrogenase I chain F [Yersinia pestis Pestoides F] gi|149291956|gb|EDM42030.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125] gi|152960261|gb|ABS47722.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis IP 31758] gi|162351346|gb|ABX85294.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis Angola] gi|165914406|gb|EDR33021.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922574|gb|EDR39725.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992920|gb|EDR45221.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166204987|gb|EDR49467.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958787|gb|EDR55808.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051884|gb|EDR63292.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056637|gb|EDR66406.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750339|gb|ACA67857.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis YPIII] gi|229680099|gb|EEO76198.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516] gi|229688201|gb|EEO80272.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. India 195] gi|229694459|gb|EEO84506.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701778|gb|EEO89803.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides A] gi|262362646|gb|ACY59367.1| NADH dehydrogenase I chain F [Yersinia pestis D106004] gi|262366275|gb|ACY62832.1| NADH dehydrogenase I chain F [Yersinia pestis D182038] gi|270338670|gb|EFA49447.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27] gi|294354824|gb|ADE65165.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003] gi|320014611|gb|ADV98182.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 461 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ ++N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 29 QPVWLDEYRSKNGYAGAEKALKGMAPTDVVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDS 88 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 89 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ G WY G G+ N+ GTKL SG V P Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAIIEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 327 GSRLGTALAMAVDHEIGMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 386 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGI 432 >gi|317048935|ref|YP_004116583.1| NADH-quinone oxidoreductase subunit F [Pantoea sp. At-9b] gi|316950552|gb|ADU70027.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. At-9b] Length = 448 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 163/404 (40%), Positives = 235/404 (58%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q + + S+ + +K L+ +D I+ VK SGL+GRGGAGF+TG+KWS MPK S Sbjct: 24 QPVWIDEYRSKNGYVGAEKALKGMSQDEIVATVKDSGLKGRGGAGFNTGLKWSLMPKDES 83 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 84 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAA 143 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +G +G N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 144 NLRKAIAEATEAGFIGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 203 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE+++ VP I G WY + + GTK+ SG V P Sbjct: 204 PFPASAGVWGKPTCVNNVETLSNVPAIFLNGVEWYKNISKSEDTGTKMMGFSGRVKNPGV 263 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L Q M++ + + GS Sbjct: 264 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLT-DQHLDLPMEFASIGKAGS 321 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 322 RLGTALAMAVDHEISMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPG 381 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 382 DIETLQQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425 >gi|292488839|ref|YP_003531726.1| NADH dehydrogenase I subunit F [Erwinia amylovora CFBP1430] gi|292899990|ref|YP_003539359.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946] gi|291199838|emb|CBJ46962.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946] gi|291554273|emb|CBA21591.1| NADH dehydrogenase I chain F [Erwinia amylovora CFBP1430] gi|312172999|emb|CBX81254.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC BAA-2158] Length = 446 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 168/404 (41%), Positives = 241/404 (59%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVFLDEYRSKNGYAGAEKALKTLTPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E A+GLLG N G+D +++VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATAAGLLGKNILGTGFDFELVVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE+++ VP IL G WY ++ GTK+ SG V P Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKSISNSDDAGTKMMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E++ GG+R G A PGG+ L Q M++ + + GS Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E + Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423 >gi|51596902|ref|YP_071093.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP 32953] gi|186895983|ref|YP_001873095.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis PB1/+] gi|51590184|emb|CAH21821.1| NADH dehydrogenase I chain F [Yersinia pseudotuberculosis IP 32953] gi|186699009|gb|ACC89638.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis PB1/+] Length = 461 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ ++N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 29 QPVWLDEYRSKNGYAGAEKALKGMVPTDVVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDS 88 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 89 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ G WY G G+ N+ GTKL SG V P Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAIIEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 327 GSRLGTALAMAVDHEIGMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 386 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGI 432 >gi|126434143|ref|YP_001069834.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS] gi|126233943|gb|ABN97343.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS] Length = 438 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 205/414 (49%), Positives = 267/414 (64%), Gaps = 9/414 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L G + +++ L D +I +K SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 ESWTLETYRRHGGYRALEQALATAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75 Query: 76 R---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 PHYLV+NADESEPGTCKD ++ PH L+EG +IA++AI AH AFIYVRGE + Sbjct: 76 PAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E Y +G LG++ G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYDAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+E + GG+R G + L PGGSS P L + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAGHE-LKFWTPGGSSTPLLTGEHL-DVPLDYEGMASV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ RL G A Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGDAT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++D L ++S I G++ CALGD AA PI IK FR + C F Sbjct: 373 EADVDKLLDISDTILGKSFCALGDGAASPIISSIKYFRDEYLAHLGNG--CPFD 424 >gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] Length = 612 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 155/417 (37%), Positives = 237/417 (56%), Gaps = 6/417 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 N + +++ +++ + + K L + + II E++ SGLRGRGGAGF TG+KW Sbjct: 137 LRNKGRIDPENIGHAIAHDGYQGLAKALFDIAPEGIIEEMRLSGLRGRGGAGFPTGLKWK 196 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F D Y++ NADE +PG DR I+ +PH ++EG +IA+ AIGAH +IY R Sbjct: 197 FAAASPGD-VKYVLCNADEGDPGAFMDRSILESDPHAVLEGMIIAAVAIGAHQGYIYCRS 255 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ + L A+ + GLLG + + D+ ++ GAGA++CGEETAL+ S+EG++ Sbjct: 256 EYPLAIQRLTLAIGQARELGLLGESILGSDFSFDLEIYQGAGAFVCGEETALMRSIEGRR 315 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR +PPFPA GL+G PT +NNVE++A V I+R G Y+G G E + GTK+F++SG Sbjct: 316 GMPRPRPPFPAQQGLWGRPTVLNNVETLANVGRIIRLGGGHYAGIGTEGSTGTKVFALSG 375 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 VN VE M L+ GG+ G AV GG S +PA + +DY+ Sbjct: 376 DVNNIGLVEVDMGTPLSVLVNDIGGGVP-GKRACKAVQLGGPSGGSIPA-HLLDTPVDYE 433 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + G+ +G+ VIVM+ T ++ F + ESCG+CTPCREGT + ++ R+ Sbjct: 434 AIAKAGAIMGSGGVIVMNDRTCMVDMARFFMDFIQDESCGKCTPCREGTRRQLEILTRIC 493 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +G ++ L +++ I ++C LG A+ PI +++FR E I RC Sbjct: 494 EGRGAPGDLRTLEDLAAVITDASLCGLGQTASNPILSALRHFRDEFEAHIMD-KRCP 549 >gi|317123850|ref|YP_004097962.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043] gi|315587938|gb|ADU47235.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043] Length = 443 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 194/403 (48%), Positives = 248/403 (61%), Gaps = 5/403 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L+ + + K L+ ++ VK S +RGRGGAGF TG+KWSFM Sbjct: 17 ESWTLATYERNDGYRALRKALDMAPADVLGAVKDSSIRGRGGAGFPTGLKWSFMS-PPDG 75 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P YLVVNADESEPGTCKD +M PH LIEG +I+S+AIG AFIY+RGE + Sbjct: 76 GPRYLVVNADESEPGTCKDIPLMMANPHALIEGAIISSYAIGCEHAFIYLRGEVVHVYRR 135 Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV+E A+G LG + G V+I VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 136 LLRAVEEARAAGYLGDDVGGKGVKVNITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FP GLY PT+VNNVESIA VP I+ RG W+ G G E + G +FS+SGHV +P Sbjct: 196 FPGAAGLYARPTSVNNVESIASVPGIILRGPDWFKGMGTEKSTGFGIFSLSGHVTHPGQF 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT ELIE G L PGGSS P + +D+D + GS Sbjct: 256 EAPLGITMRELIELAGGM--RQGHRLKFWTPGGSSTPIFTEEHL-DVPLDFDSVAAAGSM 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ V D + +++A+ R + FY HESCG+CTPCREGT W+ ++M R+ G + + Sbjct: 313 LGTRALQVFDETVSVVRAVSRWTDFYAHESCGKCTPCREGTWWLRQIMNRIENGKGTQDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ID L ++ NI GR+ CALGDAA PI +K FR E + Sbjct: 373 IDKLVDICDNILGRSFCALGDAATSPITSAVKYFREEFEAGMH 415 >gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19] gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3] gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19] gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3] Length = 596 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + K L E + +I E+ SGLRGRGG Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW KV + Y+V NADE +PG DR I+ +PH+++E I + GA Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 229 SKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ A +P IL RGA W+S G E ++ Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E + GG AV GG S CL Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L GS +G+ +IVMD ++ F ESCG+C PCR G Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++++ G + ++ L ++ I+ +C LG + P+ + NF + Sbjct: 467 LHEILQKITSGNGTEEDLTRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526 Query: 418 QYHRCN 423 + HRC Sbjct: 527 E-HRCP 531 >gi|158317831|ref|YP_001510339.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec] gi|158113236|gb|ABW15433.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec] Length = 447 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 200/407 (49%), Positives = 267/407 (65%), Gaps = 6/407 (1%) Query: 8 IFTNLY-GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T + + +L+ + + + L + D +I VK SGLRGRGGAGF TGMKW Sbjct: 6 VLTRRWTAPESWTLATYERLDGYQGLRRALAQSPDDLIKLVKDSGLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+P+ +PHYLV+NADE EPGTCKD +M+ +PH+LIEG VIA++A+ A+ AFIY+R Sbjct: 66 GFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE I L+AAV E Y +G LG + G+D+D++VH GAGAYICGEETALL+SLEG+ Sbjct: 125 GELIHAGRRLRAAVAEAYRAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGR 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLY PT VNNVE+IA VP I+ G W+ GRE G K++S+S Sbjct: 185 RGQPRLRPPFPATHGLYASPTVVNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV +P E M T EL++ G + L A PGGSS P L A + +D+ Sbjct: 245 GHVTHPGQYEAPMGTTLRELLDMAGGVLG--GRKLKAWTPGGSSTPLLTADHL-DVPLDF 301 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G++E GS LGTAA+++MD S D++K + RL+ FY HESCG+CTPCREGT WM++++ R+ Sbjct: 302 EGVQEAGSLLGTAALMIMDDSVDMLKIVRRLTQFYAHESCGKCTPCREGTTWMVQILSRM 361 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +G ++D L + NI GR CAL D A PI IK FR Sbjct: 362 ERGQGDPDDVDTLVDACDNIFGRAFCALADGATSPIVSGIKFFRNEF 408 >gi|108798545|ref|YP_638742.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS] gi|119867645|ref|YP_937597.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS] gi|108768964|gb|ABG07686.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS] gi|119693734|gb|ABL90807.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS] Length = 438 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 205/414 (49%), Positives = 267/414 (64%), Gaps = 9/414 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L G + +++ L D +I +K SGLRGRGGAGF TG KWSF+P+ Sbjct: 16 ESWTLETYRRHGGYRALEQALGTAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75 Query: 76 R---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 PHYLV+NADESEPGTCKD ++ PH L+EG +IA++AI AH AFIYVRGE + Sbjct: 76 PAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPV 135 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQAAV E Y +G LG++ G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL Sbjct: 136 LRRLQAAVAEAYEAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRL 195 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GLY CPT VNNVESIA VP IL G W+ G E + G L+S+SGHV P Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRP 255 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + IT EL+E + GG+R G + L PGGSS P L + +DY+G+ + Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAGHE-LKFWTPGGSSTPLLTGEHL-DVPLDYEGMASV 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ RL G A Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGEAT 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++D L ++S I G++ CALGD AA PI IK FR + C F Sbjct: 373 EADVDKLLDISDTILGKSFCALGDGAASPIISSIKYFRDEYLAHLGNG--CPFD 424 >gi|288818981|ref|YP_003433329.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter thermophilus TK-6] gi|288788381|dbj|BAI70128.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter thermophilus TK-6] gi|308752566|gb|ADO46049.1| formate dehydrogenase beta subunit [Hydrogenobacter thermophilus TK-6] Length = 521 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 156/413 (37%), Positives = 229/413 (55%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + S+ + + + + K L+ + IINE+K SGLRGRGGAGF Sbjct: 102 LKRQVRLTFERVGLIDPLSIDEYIKYKGFLALKKALDMKPEDIINEIKRSGLRGRGGAGF 161 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + K S+ Y+V NADE + GT DR IM +P LIE IA A+GA Sbjct: 162 PTGIKWETVLKTPSE-EKYIVCNADEGDSGTFSDRMIMECDPFLLIEAMTIAGLAVGARR 220 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +E LQ A++ G LG + G +I ++ GAGAY+CGEETALL Sbjct: 221 GYIYLRSEYPLAKEVLQEAINIACDRGYLGDDIMGSGKSFEIELYVGAGAYVCGEETALL 280 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R +PP PA GL+G PT VNNV ++A VP I+R G Y+ +G + ++GT Sbjct: 281 ESLEGKRGIVRPRPPVPAVSGLWGKPTIVNNVVTLATVPWIIREGGENYASYGTDRSKGT 340 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +SG+V VE T ELI GG + AV GG LP M Sbjct: 341 LPVQLSGNVKRGGLVEIPFGTTLRELIYDFGGGT-YSGRPVKAVQVGGPLGAYLPES-ML 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +++G LG ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 399 DIPIDYEAFQKVGGILGHGGIVVFDDTVDLWYMMRFAMEFCARESCGKCTPCRIGSQRGV 458 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+++L+K + + LL ++ + ++C LG A +P+ +++NF + Sbjct: 459 EVIDKLMKDGTNGKLLTLLEDLMDVMMHTSLCGLGGMAPYPVLSILRNFSEDL 511 >gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large subunit [Anabaena variabilis] Length = 541 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 138/409 (33%), Positives = 239/409 (58%), Gaps = 6/409 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + + + ++ + ++ +L E + +++ + SGLRGRGGAG+ TG+KW Sbjct: 128 VLENSGKVDPERIQSYIAAQGYRSLYHVLREMTANEVVDTITRSGLRGRGGAGYPTGLKW 187 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + K + +++ NADE +PG DR ++ +PH ++EG IA++A+ +IY+R Sbjct: 188 ATVAKAQGE-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVR-KQGYIYIR 245 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ LQ A+ + G+LG+ +D I + GAGAY+CGEETAL+ S+EGK Sbjct: 246 AEYPVAINRLQTAIRQAQRLGILGTQIFDSRFDFKIDIRIGAGAYVCGEETALMASIEGK 305 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G P +PP+PA GL+G PT +NNVE+ A V I+R+GA W++ G E ++GTK+F+++ Sbjct: 306 RGTPHPRPPYPAESGLWGYPTLINNVETYANVAPIIRKGAEWFASIGTEKSKGTKVFALA 365 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G + +E M + +++E GG+ + AV GG S C+PA +I+DY Sbjct: 366 GKIRNTGLIEVPMGTSLKQIVEAMGGGVPDNG-VVKAVQTGGPSGGCIPASA-FESIVDY 423 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L ++GS +G+ +IVMD +T+++ F ESCG+C PCR GT + +++ ++ Sbjct: 424 ESLTQLGSMMGSGGMIVMDETTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHKLLTKI 483 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +G A +++LL E+ ++ ++C LG +A P+ ++ FR Sbjct: 484 SQGKASLADLELLEELCDMVKNTSLCGLGQSAPNPVFSTLRYFRDEYLA 532 >gi|159899603|ref|YP_001545850.1| NADH-quinone oxidoreductase subunit F [Herpetosiphon aurantiacus ATCC 23779] gi|159892642|gb|ABX05722.1| NADH-quinone oxidoreductase, F subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 422 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 198/415 (47%), Positives = 263/415 (63%), Gaps = 5/415 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + N + L ++ G + + L II+EVK SGLRGRGGAGF TG+KW Sbjct: 11 VMRNREIENIRDLDVYLASGGYAMAKQALTSMTPAAIIDEVKKSGLRGRGGAGFPTGVKW 70 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK + P YLVVNADESEPGT + +I+ PH L+EG VI++FAIGA+ A+IY+R Sbjct: 71 SFVPKELN--PKYLVVNADESEPGTFNNHEIIDENPHQLLEGIVISAFAIGANVAYIYIR 128 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF L+ + E A GL+G N GYDV+I VH GAGAYICGEETALLESLEGK Sbjct: 129 GEFAYGARFLEQKIAEARARGLIGKNLFGTGYDVEIYVHRGAGAYICGEETALLESLEGK 188 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 GQPRLKPPFPA GLY PT VNNVE++ VP I+ +GA W+ FG E + GTK SIS Sbjct: 189 IGQPRLKPPFPAVAGLYAKPTVVNNVETLTNVPRIIEKGADWFRSFGTEKSPGTKAVSIS 248 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E + IT E I GG+R L +IPGG+S L Q M + Sbjct: 249 GHVKKPGNYEIPLGITIREFIFDWAGGMRDPNLPLKFIIPGGASSNWLT-EQHLDLPMTW 307 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + G+ LG+ A++V+D S +++A ++ F+KHESCG+C+PCREGT ++++V ER+ Sbjct: 308 DDMAAAGTMLGSGAMVVLDTSVPVVRAALKVDEFFKHESCGKCSPCREGTHFLVKVWERI 367 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +G + +I+LL +V K + G+ C LGD++ + IK FRP ++ ID H Sbjct: 368 DEGHGRVGDIELLADVGKQMLGKCFCPLGDSSVSAVNSAIKFFRPELDAAIDAQH 422 >gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] Length = 624 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 8/426 (1%) Query: 1 MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +Q I + + K + D M RG + ++ K+L + +I VKASGLRGRGG Sbjct: 139 FFKNQTFYIMEGIGTSECKKIEDYMGRGGYKSLLKVLSSMKPEEVIETVKASGLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K + ++V NADE +PG +R ++ +PH+++EG +IA++ +GA Sbjct: 199 GFPTGLKWEFTYKAKGE-KKFVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTVGA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + Y+R E+ E A+++ GLLG N G+ D+ V GAGA++CGEETA Sbjct: 258 QKGYAYIRAEYPIAVEMFNKAINDAKKMGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL S+EGK+G PR +PPFPA GL+G PT +NNVE+ A + I+R G Y G E + Sbjct: 318 LLASIEGKRGVPRPRPPFPAQKGLWGYPTLINNVETYANIAKIIRDGVENYRKRGVEKSP 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G + +E T ++E CGG L A+ GG S CLP Sbjct: 378 GTKMFSVTGPLKLTGIIEIEFGTTIRYVLENICGGT-VEGKKLKAIQIGGPSGACLPEKY 436 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DYD LK + + +G+ ++ + + +++ F K ESCG+C PCREGT Sbjct: 437 -FDLPLDYDTLKSVDAMVGSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQ 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ +G A +++ L ++K ++ ++C LG A PI +K+FR E I+ Sbjct: 496 SYTILEKFTQGKATHEDLENLESLAKIVKTASLCGLGKTAPNPILSTLKHFRDEYMEHIN 555 Query: 418 QYHRCN 423 +C Sbjct: 556 --GKCP 559 >gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] Length = 596 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + K L E + +I E+ SGLRGRGG Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW KV + Y+V NADE +PG DR I+ +PH+++E I + GA Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 229 SKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGKNIFGTDFSFDIEIRYGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ A +P IL RGA W+S G E ++ Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E + GG AV GG S CL Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L GS +G+ +IVMD ++ F ESCG+C PCR G Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++++ G + ++ L ++ I+ +C LG + P+ + NF + Sbjct: 467 LHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526 Query: 418 QYHRCN 423 + HRC Sbjct: 527 E-HRCP 531 >gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] Length = 596 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 227/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + K L E + +I E+ SGLRGRGG Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW KV + Y+V NADE +PG DR I+ +PH+++E I + GA Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +Y+R E+ E L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 229 NKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ A +P IL RGA W+S G E ++ Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E + GG AV GG S CL Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L GS +G+ +IVMD ++ F ESCG+C PCR G Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++++ G + ++ L ++ I+ +C LG + P+ + NF + Sbjct: 467 LHEILQKITSGNGTEEDLIRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526 Query: 418 QYHRCN 423 + HRC Sbjct: 527 E-HRCP 531 >gi|302523882|ref|ZP_07276224.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4] gi|302432777|gb|EFL04593.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4] Length = 427 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 201/407 (49%), Positives = 260/407 (63%), Gaps = 5/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + + + K L + ++ VK SGLRGRGGAGF G+KWSFMP D Sbjct: 17 ESWRIETYEALEGYTAARKALAATPEQLVQVVKDSGLRGRGGAGFPAGVKWSFMPPNE-D 75 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLV+NADE EPGTCKD +M +PH+LIEGC+IAS+A+ +H FIYVRGE + Sbjct: 76 KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIIASYAMRSHHCFIYVRGEALHCIRR 135 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AA E YA G LG N G+D+++ VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 136 LNAAAREAYAKGYLGKNIFGSGWDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PTTVNNVE+IA I+ G+SW+ GRE + G K++SISGHV P Sbjct: 196 FPAAAGLYAAPTTVNNVETIASASYIINAGSSWFREMGREKSPGPKIYSISGHVEKPGQY 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + T EL+E GG++ G L PGGSS P A + +D++G E GS Sbjct: 256 ECPLGTTLRELLE-LAGGMKDGIP-LKFWTPGGSSTPMFTAEHL-DVPLDFEGAAEAGSM 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT AV V + + + A+ + + FY+HESCG+CTPCREGT W+ +++ER+V+G + + Sbjct: 313 LGTTAVQVFNETVSVPWAVMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEED 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ID L +V NI GR+ CALGD A PIQ IK FR + R Sbjct: 373 IDTLLDVCDNIFGRSFCALGDGAVSPIQSGIKYFRDEFLALCESNKR 419 >gi|269139726|ref|YP_003296427.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Edwardsiella tarda EIB202] gi|267985387|gb|ACY85216.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Edwardsiella tarda EIB202] gi|304559593|gb|ADM42257.1| NADH-ubiquinone oxidoreductase chain F [Edwardsiella tarda FL6-60] Length = 448 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 171/408 (41%), Positives = 244/408 (59%), Gaps = 7/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + ++ L+ +D ++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRAKNGYHAAERALKGMAQDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ E Sbjct: 82 MNVRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIGAYALKAYRGYIFLRGEYVTAAE 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+DE A+GLLG N G+D D+ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIDEARAAGLLGKNIFGSGFDFDLFVHTGAGRYICGEETALINSLEGRRANPRAKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G +G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P Sbjct: 202 PFPASAGAWGKPTCVNNVETLCNVPAIVEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNP 261 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD+ + + Sbjct: 262 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEAHL-DLPMDFASIGKA 319 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 GSRLGTALAMAVDHEINMVSLLCNLESFFARESCGWCTPCRDGLPWGLKILRALERGEGQ 379 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 380 PGDIETLEQLCRLLAPGHTFCAHAPGAVEPLQSAIKYFRDEFEAGIAR 427 >gi|284992920|ref|YP_003411474.1| NADH-quinone oxidoreductase subunit F [Geodermatophilus obscurus DSM 43160] gi|284066165|gb|ADB77103.1| NADH-quinone oxidoreductase, F subunit [Geodermatophilus obscurus DSM 43160] Length = 442 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 250/408 (61%), Gaps = 12/408 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q LS + + L D ++ VK SGLRGRGGAGF TGMKWSF+P+ Sbjct: 15 QSWRLSTYERLDGYTALRTALSMTPDELVGMVKDSGLRGRGGAGFPTGMKWSFIPQPKPG 74 Query: 76 R--------PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 P YLVVNADE EPGTCKD +M +PH+L+EG VIAS+AI +H A IYVRG Sbjct: 75 ETPTGPAALPKYLVVNADEGEPGTCKDLPLMMADPHSLVEGVVIASYAIRSHLAVIYVRG 134 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + L AV E Y +G LG++ GYD+++IVH GAGAYICGEETALL+SLEG + Sbjct: 135 EAVHAHRRLVNAVREAYEAGYLGTDILGSGYDLELIVHAGAGAYICGEETALLDSLEGYR 194 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPRLKPPFPA GLYG PT +NNVE++A VP ++R G+ W+ FG E + G K++S+SG Sbjct: 195 GQPRLKPPFPAVAGLYGAPTVINNVETLASVPFVVRGGSDWFKEFGPERSPGPKIYSLSG 254 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E M T EL+E G L PGGSS P + +D+D Sbjct: 255 RVVRPGQYEAPMGTTMRELLEMAGG--VRPGHELKFWTPGGSSTPYFTPEHL-DVPLDFD 311 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A++V D + I++A R + FY HESCG+CTPCREGT W+++V++RLV Sbjct: 312 SVAAAGSMLGTTALMVFDETDSIVEATLRFTEFYAHESCGKCTPCREGTYWLVQVLQRLV 371 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 G ++DLL + NI GR+ CALGD A I +K FR Sbjct: 372 DGRGTAADLDLLTDTCDNILGRSFCALGDGATSCISSSLKYFRDDYVA 419 >gi|213581185|ref|ZP_03363011.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 420 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 166/401 (41%), Positives = 234/401 (58%), Gaps = 5/401 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTIAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 +I+ L ++ + + G+T CA A P+Q IK FR E Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420 >gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7] gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] Length = 596 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 150/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + K L E + +I E+ SGLRGRGG Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW KV + Y+V NADE +PG DR I+ +PH+++E I + GA Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 229 SKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ A +P IL RGA W+S G E ++ Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G VN +E M T E + GG AV GG S CL Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L GS +G+ +IVMD ++ F ESCG+C PCR G Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +++++ G + ++ L ++ I+ +C LG + P+ + NF + Sbjct: 467 LHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526 Query: 418 QYHRCN 423 + HRC Sbjct: 527 E-HRCP 531 >gi|82702146|ref|YP_411712.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis ATCC 25196] gi|82410211|gb|ABB74320.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196] Length = 425 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 164/414 (39%), Positives = 240/414 (57%), Gaps = 6/414 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72 G + L+ G + + K L I VK S LRGRGGAGF T KWSF+P Sbjct: 12 GREPPDLAQYEKAGGYGALRKALGMAPAEIQAAVKESNLRGRGGAGFPTAQKWSFVPMGD 71 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + RP YLV NADE EPGT KDR ++ +PH LIEG +I+++AI A A++++R + Sbjct: 72 DAPRPKYLVCNADEMEPGTFKDRMLLEGDPHQLIEGIIISAYAIQADVAYVFLRWAYKLA 131 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 ++ A+ E Y G LG N Y +++ +H AG YICGEETALL +LEGK+ PR Sbjct: 132 ARRVERAIVEAYRHGYLGKNILGSAYSLEMHLHVSAGRYICGEETALLNALEGKRANPRA 191 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPP+P GL+G PT VN+VE++ VP I+++GA W+ R ++ GTKL+ SG V P Sbjct: 192 KPPYPQVSGLWGKPTIVNSVETLCNVPHIVKQGAEWFRSLSRSDDGGTKLYGASGRVKNP 251 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M E++E+H GG+R G+ V+PGG+S + A + MD+D +++ Sbjct: 252 GLWELPMGTPLREILEEHAGGMRDGY-QFRGVLPGGASTDFVTAEHL-DVAMDFDSVQKA 309 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGT +I++D T + + L F+ ESCG CTPC G W+ ++++ + +G + Sbjct: 310 GSRLGTGTMIILDDKTCPVGMLLNLEHFFAQESCGWCTPCWSGLSWIEQILQDMEEGRGR 369 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +++LL ++ + G T CAL AA P+Q +K FR E I + RC + Sbjct: 370 ASDLELLESHTRLLGPGHTFCALAPGAAEPLQSGLKYFRDDFERHIHE-KRCPW 422 >gi|256380660|ref|YP_003104320.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM 43827] gi|255924963|gb|ACU40474.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM 43827] Length = 431 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 192/399 (48%), Positives = 253/399 (63%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L + + K L+ D +I + K SGLRGRGGAGF TGMKW F+P+ + Sbjct: 18 SWTLKTYEQLEGYTALRKALKVHPDQLIQQCKDSGLRGRGGAGFPTGMKWGFIPQ-GDGK 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 PHYLV+NADE EPGTCKD +M +PH+L+EG +I S+AI A+ A IYVRGE + L Sbjct: 77 PHYLVINADEGEPGTCKDIPLMMADPHSLVEGIIITSYAIRANFAAIYVRGEVLHVIRRL 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AAV E Y +G LG + G+D+D++VH GAGAYICGEETALL+SLEG++GQPRLKPPF Sbjct: 137 NAAVREAYEAGYLGKDILGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT VNNVE+IA VP ++ G+ W+ GR+ + G K++S+SGHV P E Sbjct: 197 PATAGLYASPTVVNNVETIASVPYVVNGGSDWFRTMGRDRSPGPKIYSLSGHVERPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T L+E G G L PGGSS P A + +D++G+ E GS L Sbjct: 257 APMGTTLRTLLEMAGGMKDGVP--LKFWTPGGSSTPLFTAEHL-DVPLDFEGVAEAGSML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT AV + + + + A+ + + FYKHESCG+CTPCREGT W+ + ++R+V+G +I Sbjct: 314 GTTAVQIFNETVSVPWAVMKWTEFYKHESCGKCTPCREGTYWLTKTLQRMVRGEGTPSDI 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L +V NI GR+ CALGD A PI IK F+ Sbjct: 374 DTLLDVCSNILGRSFCALGDGAVSPITSGIKYFKDEFLA 412 >gi|157371541|ref|YP_001479530.1| NADH dehydrogenase I subunit F [Serratia proteamaculans 568] gi|157323305|gb|ABV42402.1| NADH-quinone oxidoreductase, F subunit [Serratia proteamaculans 568] Length = 450 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 174/415 (41%), Positives = 242/415 (58%), Gaps = 7/415 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K ++ D I+ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYAGAEKAIKGLAPDEIVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +G LG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 HLRRAIAEATEAGYLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 203 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYKGISAGKSNDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 263 GVWELPFGTTAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLTADHL-DLPMDFESIGKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L G Q Sbjct: 321 GSRLGTALAMAVDHEIGMVPLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALENGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +I+ L ++ +++ G+T CA A P+Q IK FR E I H N Sbjct: 381 PGDIETLEQLCRSLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKVKHFSNAH 435 >gi|270262810|ref|ZP_06191081.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13] gi|270043494|gb|EFA16587.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13] Length = 450 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 176/415 (42%), Positives = 244/415 (58%), Gaps = 7/415 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K ++ D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYAGAEKAIKGLAPDEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ + GTKL SG V P Sbjct: 203 PFPASSGVWGKPTCVNNVETLCNVPAILANGIEWYQGINGGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 263 GVWELPFGITAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLTADHL-DLPMDFESIGKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L G Q Sbjct: 321 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +I+ L ++ +++ G+T CA A P+Q IK FR E I H N Sbjct: 381 PGDIETLEQLCRSLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIAVKHFSNAH 435 >gi|238753750|ref|ZP_04615111.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473] gi|238707986|gb|EEQ00343.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473] Length = 439 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 241/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L ++N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 13 QPVWLDEYRSKNGYAGAEKALTGMAPPDVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 73 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 133 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E I+ E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 253 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 311 GSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGI 416 >gi|300023972|ref|YP_003756583.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC 51888] gi|299525793|gb|ADJ24262.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC 51888] Length = 521 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 156/413 (37%), Positives = 230/413 (55%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 +Q+R+ G+ S+ D G +D + K L I+ EV SGLRGRGGAGF Sbjct: 98 FKNQERLTFARCGITDPFSIEDYRKHGGYDGLTKALAMKPIDIVTEVTTSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + +D Y+ NADE + GT DR +M +P LIEG IA+ A GA Sbjct: 158 PTGIKWKTVHDIAAD-QKYVACNADEGDSGTFADRMLMEGDPFCLIEGMTIAAVAGGATK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A++ A+ LG N GY D+ V GAGAY+CGEET++L Sbjct: 217 GYIYVRSEYPHSVHNLRQAIEIARAANWLGDNIQGSGYSFDLFVRMGAGAYVCGEETSML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S A VP IL +G +Y +G +RGT Sbjct: 277 ESLEGKRGLVRYKPPIPAIEGLFGKPTIINNVMSFAAVPIILAKGGEFYKNYGIGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F I+G++ VE++ +T +LIE GG + AV GG LP + Sbjct: 337 LAFQITGNIKQGGLVEKAFGVTTRQLIEDWGGGT-YSGRPVRAVQIGGPLGAYLPESK-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ ++ + +G ++V D + D+ K F ESCG+CTPCR G+ + Sbjct: 395 DVPMDYEEFAKVDAMVGHGGLVVFDDTVDMAKMARFAMEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM+R++ + ++R I+LL ++ + + ++CALG +P++ ++ F Sbjct: 455 EVMDRIIADVDRERNIELLEDLCETMTDGSLCALGGLTPYPVRSALRGFPEDF 507 >gi|300782456|ref|YP_003762747.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] gi|299791970|gb|ADJ42345.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] Length = 431 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 197/406 (48%), Positives = 255/406 (62%), Gaps = 5/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + + V K L + ++ VK SGLRGRGGAGF G+KWSFMP D Sbjct: 17 NSWQIGTYEALEGYTAVRKALAGTPEQLVQLVKDSGLRGRGGAGFPAGIKWSFMPPNF-D 75 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLV+NADE EPGTCKD +M +PH+LIEGC+IAS+A+ ++ FIYVRGE + Sbjct: 76 KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIIASYAMRSNHCFIYVRGEALHCIRR 135 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AAV E A+G LG N G+D+ I VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 136 LNAAVREAEAAGYLGENILGSGFDLKITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PTTVNNVE+IA P I+ G+SW+ GRE + G K++SISGHV P Sbjct: 196 FPAAAGLYAAPTTVNNVETIASAPFIVNGGSSWFREMGREKSPGPKIYSISGHVEKPGQY 255 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + T EL++ G L PGGSS P + +D++G E GS Sbjct: 256 ECPLGTTLRELLDMAGGM--KDGIPLKFWTPGGSSTPMFTVEHL-DVPLDFEGAAEAGSM 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT AV V + + + A+ + + FY+HESCG+CTPCREGT W+ +++ER+V+G + + Sbjct: 313 LGTTAVQVFNETVSVPWAVMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEED 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ID L +V NI GR+ CALGD A PI IK FR ++ Sbjct: 373 IDTLLDVCDNILGRSFCALGDGAVSPITSGIKYFRDEFLALCEKNR 418 >gi|254430638|ref|ZP_05044341.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001] gi|197625091|gb|EDY37650.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001] Length = 606 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 151/420 (35%), Positives = 245/420 (58%), Gaps = 7/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + + + +S+ D+++ G + + ++L E + + ++VK SGLRGRGGAG+ TG+KW Sbjct: 119 VLESCGVVNPESIDDALAHGSYAQLKRVLLECTPEQVRDQVKRSGLRGRGGAGYPTGLKW 178 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + P +V NADE +PG DR ++ +PH LIEG IA+FA+GA ++YVR Sbjct: 179 DTVALQPPG-PRTVVCNADEGDPGAFMDRSVLESDPHRLIEGMAIAAFAVGADQGYVYVR 237 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ E L+ A+ + + GLLG+ +++ + V GAGAY+CGEETALL S++G+ Sbjct: 238 AEYPLAIERLRLALRQARSKGLLGNGIAGSSFNLRLEVRVGAGAYVCGEETALLASIQGQ 297 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PR +PPFPA VGL+G PT +NNVE++A +P ILR G WY+ G E ++GTK+F++S Sbjct: 298 RGTPRPRPPFPAQVGLWGAPTLINNVETLASIPVILREGGDWYAAMGTEGSKGTKVFALS 357 Query: 246 GHVNYPCTVEESMSITFDELIEKH---CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 G V VE M + +++ G G + AV GG S C+PA + Sbjct: 358 GAVERTGLVEVPMGTSLRTVVQTIGGGVPGGEGPDGGVKAVQTGGPSGGCIPA-HLLDTP 416 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DY+ L+ +GS +G+ ++VM T + + F +ESCG+C PCR GT +++++ Sbjct: 417 VDYESLRALGSMMGSGGLVVMGERTAMPEVARHFMRFSVNESCGKCVPCRAGTVQLLQLL 476 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +R V+ A +++ L + + ++C LG AA P+ ++ FR + + +C Sbjct: 477 DRFVERRASLGDLERLEALCGMVGATSLCGLGQAAPNPVLSTLRYFRQEYQAACREPAQC 536 >gi|293395174|ref|ZP_06639460.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582] gi|291422351|gb|EFE95594.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582] Length = 450 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 172/407 (42%), Positives = 240/407 (58%), Gaps = 7/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K ++ D I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYAGAEKAIKGLAPDEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE++ Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 HLRRAIAEATEAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAILANGVDWYKGISAGKSNDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 263 GVWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIGKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L G Q Sbjct: 321 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 381 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIK 427 >gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF [Desulfatibacillum alkenivorans AK-01] Length = 633 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 148/424 (34%), Positives = 232/424 (54%), Gaps = 8/424 (1%) Query: 5 QDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62 Q R + N+ + + D ++ G + + K L + ++ EV+ SG+RGRGGAGF Sbjct: 148 QTRNVLKNIGTIDPTDIYDYIAVGGYQALAKALTTMTPEQVLEEVEKSGIRGRGGAGFPA 207 Query: 63 GMKWSFM--PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G KW K ++P Y+VVN DE +PG D +M +PH ++EG ++ ++A+G+ Sbjct: 208 GRKWRGAVQAKERKNQPLYVVVNGDEGDPGAFMDGSVMEGDPHAVLEGLILGAYAMGSEK 267 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ + L+ A+ GLLG N G+ D ++ GAGA++CGE TAL Sbjct: 268 GYMYVRAEYPLAIQHLEMAMAAARELGLLGDNILNTGFCFDAQINRGAGAFVCGESTALF 327 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK G+PR K GL+GCPT +NNVE+ A +P I+ +GA WY+ G NN GT Sbjct: 328 TSIEGKAGEPRPKYVRSVEEGLWGCPTVLNNVETWANIPKIIDKGAEWYASIGSPNNTGT 387 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS+ G VN VE + + + + GG G AV GG S C+P + + Sbjct: 388 KVFSLVGKVNNVGLVEVPLGTSLSTI-IEDIGGGIPGGGEFKAVQTGGPSGGCIP-YKHK 445 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A +DYD L ++GS +G+ +IVMD+ ++ F + ESCG+C PCR G M Sbjct: 446 DAPVDYDSLTKLGSMMGSGGMIVMDKRDCVVDVARYFLKFLEEESCGKCNPCRLGLTRMR 505 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++ KG +++I+ L ++ +I+ +CALG +A P+ + F+ I Sbjct: 506 EILDDFSKGCGSEQDIEDLMSLATSIQDGALCALGTSAPNPVLTTLHFFKDEYLAHIKD- 564 Query: 420 HRCN 423 +C Sbjct: 565 QKCP 568 >gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 624 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 155/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + + + S+ + ++ G ++ ++K L ++ + II+E+ S LRGRGG Sbjct: 138 FYKKQTRLVLEHCGHIDATSIKEYLAVGGYEALEKALFDRDDEGIIHEITESNLRGRGGG 197 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW+ + + + Y+V N DE +PG DR IM +PH ++EG +IA+ A A Sbjct: 198 GFPAGRKWTQVRRQV-EPTKYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAAKACKA 256 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+DE GLLG + + DI ++ GAGA++CGE +A Sbjct: 257 REGYIYVRAEYPLAISRLRKAIDEAREYGLLGEHILGTDFSFDIKINRGAGAFVCGEGSA 316 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+ PT +NNVE+ A VP I+ G WY G G E + Sbjct: 317 LTASIEGKRGMPRVKPPRTVEQGLFEKPTVLNNVETFANVPLIILNGVDWYKGIGPEKSP 376 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G++ +E M T E+I GG+R G N AV GG S C Sbjct: 377 GTKAFALTGNIENTGLIEVPMGTTLREVIFDIGGGMRDGA-NFKAVQIGGPSGGC-LTSD 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D+D LK+ G+ +G+ ++VMD +T +++ F ++ESCG+C PCREGT Sbjct: 435 DLDLPLDFDSLKKAGAMIGSGGLVVMDENTCMVEVARFFMNFTQNESCGKCVPCREGTKR 494 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G ++ ++D L E++ I +C LG AA+P+ IK F+ I Sbjct: 495 MLEILERIVVGGGEENDLDQLLELADTISSTALCGLGKTAAFPVVSTIKKFKGEYLAHIV 554 Query: 418 QYHRCN 423 +C Sbjct: 555 D-KKCP 559 >gi|239980147|ref|ZP_04702671.1| NADH dehydrogenase I chain F [Streptomyces albus J1074] gi|291452002|ref|ZP_06591392.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074] gi|291354951|gb|EFE81853.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074] Length = 449 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 194/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 28 ESWTLETYRRHDGYEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDG 86 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + Sbjct: 87 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 146 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV E Y +G LG + G D+D+ VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 147 LHEAVREAYEAGYLGKDVLGSGLDLDLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 206 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPT VNNVESIA VP IL++G W+ G E + G L+S+SGHV P Sbjct: 207 FPAVAGLYACPTVVNNVESIASVPAILQQGKEWFRSMGSEKSPGFTLYSLSGHVAGPGQY 266 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 267 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 323 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + + Sbjct: 324 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGQGKMSD 383 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 384 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRDEYEQHIT-GKGCPFD 433 >gi|238788650|ref|ZP_04632442.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC 33641] gi|238723245|gb|EEQ14893.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC 33641] Length = 440 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 13 QPVWLDEYRSKTGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 73 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAA 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 311 GSRLGTALAMAVDHEIGMVTLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416 >gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] Length = 635 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 149/425 (35%), Positives = 234/425 (55%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIARKGYFALADCLLNKQPLDVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++I + Sbjct: 209 GFPTGLKWEFAHKQKSDI-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSISS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 SKGLVYIRAEYPLAINRLRIAINQARQYGLLGDHILGTEFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFAAIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVSVSRFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ + NF E + Sbjct: 506 LLELLNKITEGRGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYLEHVR 565 Query: 418 QYHRC 422 C Sbjct: 566 D-KTC 569 >gi|304398212|ref|ZP_07380086.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB] gi|308187600|ref|YP_003931731.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1] gi|304354078|gb|EFM18451.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB] gi|308058110|gb|ADO10282.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1] Length = 448 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 168/404 (41%), Positives = 237/404 (58%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +D I+ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 24 QPVWLDEYRSKNGYAGAEKALKSMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDES 83 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 84 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 143 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +G LG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 144 HLRRAIAEATEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 203 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G +G PT VNNVE+++ VP IL G WY + + GTK+ SG V P Sbjct: 204 PFPASAGAWGKPTCVNNVETLSNVPAILANGVEWYKNISKSEDAGTKMMGFSGRVKNPGV 263 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E IT E++E + GG+R G A PGG+ L Q M++ + + GS Sbjct: 264 WELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLT-DQHLDLPMEFASIGKAGS 321 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 322 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPG 381 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E + Sbjct: 382 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 425 >gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] Length = 618 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 156/426 (36%), Positives = 230/426 (53%), Gaps = 8/426 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R IF + ++ + + ++K L E II E+K +GLRGRGG Sbjct: 133 FYKLQKRVIFGRNQMIDPTNVLHYIGEDGYKGLEKALFEMEPQQIIQEIKGAGLRGRGGG 192 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW+ K D +++ NADE +PG DR ++ PH++IEG +IA+ A+ + Sbjct: 193 GFPTGIKWATCAKHDGD--RFVICNADEGDPGAYMDRSLLEGNPHSIIEGMLIAAVAMQS 250 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H F+YVR E+ ++L A+ GLLG N G+D DI V G G+++CGE TA Sbjct: 251 HNGFVYVRHEYPLAVKNLNIALKSAREIGLLGKNILGSGFDFDIKVSRGGGSFVCGESTA 310 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEGK G+PR K G P+++NNVE+ A VP I+ GA WY+ G E ++ Sbjct: 311 LMASLEGKPGRPRAKYVHTVEKGFRESPSSLNNVETYANVPHIINNGAEWYASMGTEGSK 370 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G+V VE M +I GGI AV GG S C+P Q Sbjct: 371 GTKIFSLVGNVVNTGLVEVPMGTNLRTIIYDIGGGIP-KKKKFKAVQSGGPSGGCIP-EQ 428 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D+D L ++GS +G+ +IVMD+ T ++ F K ESCGQC PCREG Sbjct: 429 FLDVPVDFDELVKIGSMMGSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKQ 488 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ V+ R+ G ++ +I+LL E+ ++ ++C LG ++ P+ + FR E I Sbjct: 489 MLDVLTRICAGEGKEGDIELLEELGAMVQKFSLCGLGTSSPNPVLTTLMYFRHEYEAHIR 548 Query: 418 QYHRCN 423 +C Sbjct: 549 D-KKCP 553 >gi|226227063|ref|YP_002761169.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] gi|226090254|dbj|BAH38699.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] Length = 442 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 198/405 (48%), Positives = 266/405 (65%), Gaps = 7/405 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + ++L+ +RG ++ ++K L I N VK SGLRGRGGAGF TGMKWSFM Sbjct: 23 EARTLAGWRARGGYEALEKALATDPVEIQNIVKESGLRGRGGAGFPTGMKWSFMK--PDG 80 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + HYL NADESEPGT KDR+IMR PH L+EG + + AI A A+IY+RGEF Sbjct: 81 KTHYLCCNADESEPGTFKDREIMRWTPHGLVEGVALGAHAIYAETAYIYIRGEFTEPYAR 140 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + AAV+E YA+G+LG+N+ G VD+ VH GAGAYICGEETAL+ SLEG++G PR+KPP Sbjct: 141 VCAAVEEAYAAGILGANAMGSGKRVDVHVHRGAGAYICGEETALMNSLEGRRGNPRIKPP 200 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR---ENNRGTKLFSISGHVNYP 251 FPA GL+G PTT+NNVE++ VP I++ GA WY FGR + GTKLFS+ G+++ P Sbjct: 201 FPAVAGLFGKPTTINNVETLTAVPYIVKNGAEWYKQFGRADNPKSIGTKLFSVCGNISRP 260 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E ++ F E + CGG G + + AVIPGGSSVP L + A+MDY+G+ + Sbjct: 261 GNYEVALGFPFKEFLYDLCGGPLPGRE-IKAVIPGGSSVPILTREEAESALMDYEGMVAV 319 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +G+ VIV D D+++ I RL+ FY HESC QC+ CREGT W R+MER+ G Sbjct: 320 GTMMGSGGVIVFDDRQDMVRQIARLTRFYAHESCAQCSQCREGTAWTTRIMERIRDGQGT 379 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++D L ++ N+ G+TIC L D+ A P+ +K FR E +I Sbjct: 380 AEDLDTLLSIADNMSGKTICVLSDSCATPVVSGLKKFRHEFEAKI 424 >gi|310768161|gb|ADP13111.1| NADH dehydrogenase I chain F [Erwinia sp. Ejp617] Length = 446 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 170/404 (42%), Positives = 242/404 (59%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVFLDEYRSKNGYVGAEKALKTLTPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E A+GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATAAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE+++ VP IL G WY G ++ GTK+ SG V P Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E++ GG+R G A PGG+ L Q M++ + + GS Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E + Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423 >gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] Length = 633 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 154/425 (36%), Positives = 238/425 (56%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + + ++ G + ++K+L E +I E+ S LRGRGG Sbjct: 146 FYKKQTRNVLKNCGHIDSEHIQEYIAAGGYRALEKVLFEMTPAQVIEEISESNLRGRGGG 205 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + + ++ Y+V N DE +PG DR IM +PH +IEG +I ++A+GA Sbjct: 206 GFPTGYKWSQVARQP-EKVRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGA 264 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + GLLG + + ++ GAGA++CGE +A Sbjct: 265 RDGYIYVRAEYPLAISRLKLAISQAEECGLLGDLILGTDFSFHLHINRGAGAFVCGEGSA 324 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ A VP I+ GA W+ G EN+ Sbjct: 325 LTASIEGSRGMPRVKPPRTVEKGLFAKPTVLNNVETFANVPMIINEGAGWFKSIGPENSP 384 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G V + +E M + E+I GGI+ AV GG S CL Sbjct: 385 GTKAFALTGSVKHTGLIEVPMGTSLREVIYDIGGGIKEDGK-FKAVQIGGPSGGCLVTRH 443 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 444 L-DVNLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 502 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++DLL E++ I +C LG +AA P+ +K FR E + Sbjct: 503 MLEILERIVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVVSTLKLFRDEYVEHVV 562 Query: 418 QYHRC 422 +C Sbjct: 563 D-KKC 566 >gi|188533351|ref|YP_001907148.1| NADH dehydrogenase I subunit F [Erwinia tasmaniensis Et1/99] gi|188028393|emb|CAO96254.1| NADH dehydrogenase I chain F [Erwinia tasmaniensis Et1/99] Length = 446 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 169/404 (41%), Positives = 241/404 (59%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ D I++ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVFLEEYRSKNGYAGAEKALKTLAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G++G PT VNNVE+++ VP IL G WY G ++ GTK+ SG V P Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGV 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E++ GG+R G A PGG+ L Q M++ + + GS Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERKEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E + Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423 >gi|149909800|ref|ZP_01898451.1| NuoF2 NADH I CHAIN F [Moritella sp. PE36] gi|149807132|gb|EDM67088.1| NuoF2 NADH I CHAIN F [Moritella sp. PE36] Length = 425 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 173/407 (42%), Positives = 241/407 (59%), Gaps = 6/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ G + + KIL D +I+ VKAS LRGRGGAGF TG+KWSF+PK Sbjct: 14 DSTNIEFYEKTGGYQGLKKILTTYSPDKVIDAVKASNLRGRGGAGFPTGLKWSFVPKDD- 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + HYL NADE EPGT KDR +M +PH +IEG +IA++AI A A+IY+RGE+ + Sbjct: 73 GKIHYLCCNADEGEPGTFKDRLLMERDPHRVIEGMIIAAYAIRAEVAYIYIRGEYGLSID 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ YA G LG N + ++I VH GAGAYICGEETALLES+EG++GQP+LKP Sbjct: 133 MITQAIKAAYAKGYLGKNIFNTDFCLNIYVHKGAGAYICGEETALLESIEGRRGQPKLKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY CPT +NNVE+ V I +G W++ G ++ G +LF +SG + P Sbjct: 193 PFPAVSGLYDCPTVINNVETFVCVTHIFAKGVDWFTSIGPDDAPGPRLFGLSGQLQNPGI 252 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 VE M + EL+ + GG G AVIPGG S P +P + M++ L S Sbjct: 253 VELPMGLPLSELVYDYGGGPLTG--KFKAVIPGGLSAPMIPLAGL-DVKMNFADLATADS 309 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+AAVI +D + I R++ F+ HESCG+C PCREG W +++ R+ G + Sbjct: 310 MMGSAAVIALDETASIPAVGRRIAEFFSHESCGKCAPCREGLPWASKILNRIESGQGRPG 369 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ L + + + CALG AAW I+ +K+F + I Q Sbjct: 370 DLEQLQVICGGVFNNSFCALGVGAAWAIRATLKHFPHEYDALITQQK 416 >gi|123441680|ref|YP_001005664.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088641|emb|CAL11436.1| NADH dehydrogenase I chain F [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 456 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 29 QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 88 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 89 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 327 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 386 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 432 >gi|114566555|ref|YP_753709.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337490|gb|ABI68338.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 407 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 168/415 (40%), Positives = 244/415 (58%), Gaps = 11/415 (2%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ RI YG + + D ++ G + +++K + +I EVK S LRGRGGAGF Sbjct: 1 MAEEMRIVLRNYGKIDPLKIDDYIAAGGYKSLEKARSMKQTEVIEEVKKSNLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + GMKW+F +V S+ Y+V NADE EPGT KDR IM ++P ++IEG I +AIG+ Sbjct: 61 NAGMKWNFSYQVQSE-EKYVVCNADEGEPGTYKDRIIMENDPQSVIEGMAICGYAIGSKK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGE+ + L A+ + A G+LG D D+ V G GAY+CGEE+AL+E Sbjct: 120 GYIYCRGEYPYVVDILNQAIAQAKAKGVLG-------DFDVEVRMGGGAYVCGEESALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G+PR KPPFP +GL+ PT VNNVE+ A +P I+ +G WY G N GTK Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWQKPTIVNNVETFANIPIIIEKGGDWYKAIGAPNYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G VN E + T E+I G G AV GG+S +P + Sbjct: 233 VLTLTGDVNNRTFFEVPTNTTIREVIFGLGG-GVAGGKKFKAVQIGGTSGGFIPESNL-D 290 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + +G+ LG+ AV VMD S DI+ + R++ F++HESCG+C+PCREGT M Sbjct: 291 TPIDFDSMNSIGAVLGSGAVFVMDESRDIVNVVARIAKFFEHESCGKCSPCREGTKRMHE 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +MERL G +++LL + K + +C LG AA P+ IKNF + + Sbjct: 351 MMERLNAGEGNAEDVELLGRLGKVMSVACLCGLGQAAPAPVLTTIKNFNADYQAK 405 >gi|118471561|ref|YP_886419.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis str. MC2 155] gi|118172848|gb|ABK73744.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis str. MC2 155] Length = 443 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 209/419 (49%), Positives = 270/419 (64%), Gaps = 14/419 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L + + + L G D +I VK SGLRGRGGAGF TG KWSF+P+ D Sbjct: 16 EPWTLETYRRHDGYQGLQRALSMGPDDVIAFVKDSGLRGRGGAGFPTGTKWSFIPQERGD 75 Query: 76 RP--------HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 +P HYLV+NADESEPGTCKD ++ PH L+EG +IA++AI A AFIYVRG Sbjct: 76 QPAGGPAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRARHAFIYVRG 135 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + LQAAV E YA+G LG++ G+D+D+IVH GAGAYICGEETALL+SLEG++ Sbjct: 136 EVLPVLRRLQAAVAEAYAAGYLGTDIMGSGFDLDLIVHAGAGAYICGEETALLDSLEGRR 195 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPRL+PPFPA GLY CPT VNNVESIA VP I+ G W+ G E + G L+S+SG Sbjct: 196 GQPRLRPPFPAVAGLYACPTVVNNVESIASVPPIMVNGVDWFRSMGSEKSPGFTLYSLSG 255 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E + IT EL+E + GG+R G L PGGSS P L A + +DY+ Sbjct: 256 HVTRPGQYEAPLGITLRELLE-YAGGVRAG-HQLKFWTPGGSSTPLLTAEHL-DVPLDYE 312 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G+ +GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ RL Sbjct: 313 GMASVGSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLE 372 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + +ID L ++S NI G++ CALGD AA PI IK+FR +D C F Sbjct: 373 NGAGTEADIDKLLDISDNIFGKSFCALGDGAASPIMSSIKHFRDEYVAHLDGG--CPFD 429 >gi|194324420|ref|ZP_03058193.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis subsp. novicida FTE] gi|194321485|gb|EDX18970.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis subsp. novicida FTE] Length = 391 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 201/383 (52%), Positives = 250/383 (65%), Gaps = 4/383 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 + II E+K SGLRGRGGAGF TG+KWSFMP+ Y+V N+DE EPGTCKDR+I+R Sbjct: 7 PEQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPG-QKYVVCNSDEGEPGTCKDREILR 65 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYD 158 + PH LIEG IA + +GA + Y RGEF + A+ E Y +GLLG+N K G Sbjct: 66 NNPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGIS 125 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ GAGAYICGEETALL SLEGKKG+PR KPPFPA GLY PT +NN E+ A VP Sbjct: 126 FDLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVP 185 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL+ G W+ G E + GTKLF +SGHV VE + + F EL++ CGG+R G Sbjct: 186 AILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQKVVEIGLGMPFKELLDM-CGGVRNGNK 244 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 L AVIPGGSS L A +M MDY+ + GS LG+ AV+V+D +T +++ + RL+ Sbjct: 245 -LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLAD 303 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 FY ESCGQCTPCREGTGW+ R + R+V G + +ID L V+ NIEG TIC LGDAAA Sbjct: 304 FYYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAA 363 Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421 WP+Q I FR I+ R Sbjct: 364 WPVQSYIDKFRHEFVYMIENNGR 386 >gi|332830193|gb|EGK02821.1| NADH oxidoreductase, F subunit [Dysgonomonas gadei ATCC BAA-286] Length = 457 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 194/411 (47%), Positives = 265/411 (64%), Gaps = 16/411 (3%) Query: 21 SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G + +V+K L+ D ++ +VK SG+RGRGGAGF GMKWSF+ K S +P + Sbjct: 19 EVYRKNGGYASVEKALKTMTPDEVVEQVKTSGMRGRGGAGFPMGMKWSFIDK-KSGKPRH 77 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 LVVNADESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++ + L+ A Sbjct: 78 LVVNADESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKA 137 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + E YA+G LG N GYD+D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA Sbjct: 138 IKEAYANGWLGKNILGTGYDLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+ PT VNNVESI+ V I+ G Y+ G + GTKL S SGH+ P E + Sbjct: 198 SGLWNEPTVVNNVESISTVSWIINNGGEEYAKIGIGRSTGTKLMSASGHIKNPGVYEIEL 257 Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDGLKE 310 ++ DE +++CGG+ L AVIPGG SVP LP + ++ Y+ L + Sbjct: 258 GMSVDEFFNSDEYCGGMLDDRP-LKAVIPGGCSVPILPPQYIFKTANGEDRLLSYESLSD 316 Query: 311 ----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 GS LG+ IV + + I++ W S F+ HESCGQC+PCREGTGWM +++ R+ Sbjct: 317 GGFVTGSSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIE 376 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 G ++ +IDLL+ + IEG TIC LGDAA+WP+ I++FR E + Sbjct: 377 TGFGREEDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHVR 427 >gi|86739256|ref|YP_479656.1| NADH-quinone oxidoreductase,subunit F [Frankia sp. CcI3] gi|86566118|gb|ABD09927.1| NADH dehydrogenase subunit F [Frankia sp. CcI3] Length = 443 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 198/398 (49%), Positives = 259/398 (65%), Gaps = 5/398 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + ++ + + D +I VK SGLRGRGGAGF TGMKW F+P+ Sbjct: 15 ESWTIETYTRLDGYTALRTAFAMAPDDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDG 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 RPHYLV+NADE EPGTCKD +M +PH+LIEG +IA++A+ A AF+Y+RGE I Sbjct: 74 RPHYLVINADEGEPGTCKDAPLMMADPHSLIEGIIIAAYAVRAGRAFVYLRGELIHAARR 133 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQAAV E Y +G LG + G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 134 LQAAVAEAYRAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPP 193 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVE+IA VP I+ G W+ GRE + G K++S+SGHV P Sbjct: 194 FPATHGLYASPTVVNNVETIASVPYIVNYGVDWFRSMGRERSPGPKIYSLSGHVTRPGQY 253 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T EL++ G G L A PGGSS P L A + A +D++G++E GS Sbjct: 254 EAPMGTTLRELLDLAGG--VRGGHGLKAWTPGGSSTPMLTAEHL-DAPLDFEGMQEAGSL 310 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGTAA+++MD + D++K + RL+ FY HESCG+CTPCREGT WM++++ R+ +G + Sbjct: 311 LGTAALMIMDDTVDMLKVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRMERGQGDAED 370 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +D L + NI GR CAL D A PI IK FR Sbjct: 371 VDTLVDACDNIFGRAFCALADGATSPIVSGIKYFRDEF 408 >gi|237746746|ref|ZP_04577226.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS] gi|229378097|gb|EEO28188.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS] Length = 433 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 208/422 (49%), Positives = 279/422 (66%), Gaps = 8/422 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62 + +F L G +L+D +RG ++ + +IL I+ EV+ +GLRGRGGAGF T Sbjct: 10 EPVLFKGLTGEN-WTLADYRARGGYEQIGRILGGHMPAGQIVAEVRTAGLRGRGGAGFPT 68 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 +KW FMPK + YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G + Sbjct: 69 AVKWGFMPKDHAG-QTYLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGY 127 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+ GE E A+ + +GL+G N G+D ++ HG GAYICGEETALLES Sbjct: 128 IYIHGEIWTVYERFGEAIRQAREAGLIGKNIMDSGFDFELHAVHGYGAYICGEETALLES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+GQPR KPPFPA GLYG PTT+NNVE++A VP I+ G Y+G GR+ GTK+ Sbjct: 188 MEGKRGQPRFKPPFPAANGLYGRPTTINNVETLAYVPFIMAMGGKAYAGLGRDGCSGTKV 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SG V P E + I F EL+E G G + AVIPGGSS P LPA M Sbjct: 248 FSVSGDVVCPGNYEVPLGIPFPELLELAGGVKGGN--KIRAVIPGGSSSPVLPAETMLAL 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LGT VIV+D + ++K++ LS FY +ESCGQCTPCREGTGW++++ Sbjct: 306 NMDYDSIAKAGSMLGTGGVIVLDETRCMVKSLLNLSRFYWNESCGQCTPCREGTGWLVKL 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +ER+ KG + ++DLL V+ NI+GRTICALGDAAA P++ +++FR E I ++ R Sbjct: 366 IERIEKGQGKPADLDLLDTVAANIQGRTICALGDAAAMPVRSFLRHFRQEFEYHI-EHKR 424 Query: 422 CN 423 C Sbjct: 425 CP 426 >gi|322831988|ref|YP_004212015.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602] gi|321167189|gb|ADW72888.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602] Length = 453 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 172/410 (41%), Positives = 244/410 (59%), Gaps = 7/410 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q + + S+ + +K L+ ++ I+N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 26 QPVWIDEYRSKNGYVGAEKALKGMAQEEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 85 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ ++ +I++RGE+I Sbjct: 86 MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLISAFALKSYRGYIFLRGEYIEAAV 145 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 146 NLRRAIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 205 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G +G PT VNNVE++ VP IL G WY G G+ + GTKL SG V P Sbjct: 206 PFPASAGAWGKPTCVNNVETLCNVPAILEHGVDWYKGISAGKSEDAGTKLMGFSGRVKNP 265 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E++ GG+R G A PGG+ L A + MD+ + + Sbjct: 266 GVWELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFASIGKA 323 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 324 GSRLGTALAMAVDNEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 383 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +I+ L ++ + + G+T CA A P+Q IK FR E I + H Sbjct: 384 PGDIETLEQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIAKQH 433 >gi|238920563|ref|YP_002934078.1| NADH dehydrogenase I subunit F [Edwardsiella ictaluri 93-146] gi|238870132|gb|ACR69843.1| NADH oxidoreductase [Edwardsiella ictaluri 93-146] Length = 448 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 171/408 (41%), Positives = 245/408 (60%), Gaps = 7/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + ++ L+ +D ++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLEEYRAKNGYHAAERALKGMAQDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++R E Sbjct: 82 MNVRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIGAYALKAYRGYIFLRGEYVRAAE 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+DE A+GLLG N G+D D+ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIDEARAAGLLGKNIFGSGFDFDLFVHTGAGRYICGEETALINSLEGRRANPRAKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ G +WY G G+ + GTKL SG V P Sbjct: 202 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGVAWYQGLSAGKSQDAGTKLMGFSGRVKNP 261 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD+ + + Sbjct: 262 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEAHL-DLPMDFASIGKA 319 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 GSRLGTALAMAVDHEINMVSLLCNLESFFARESCGWCTPCRDGLPWGLKILRALERGEGQ 379 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 380 PGDIETLEQLCRLLAPGHTFCAHAPGAVEPLQSAIKYFRGEFEAGIAR 427 >gi|225405663|ref|ZP_03760852.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme DSM 15981] gi|225042808|gb|EEG53054.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme DSM 15981] Length = 1048 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 155/424 (36%), Positives = 238/424 (56%), Gaps = 6/424 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N ++ SL ++R + + K L ++ ++ VK +GLRGRGGA Sbjct: 147 FFEGQIRIALRNCGQMEFSSLEAYVARDGYAALAKALHGMTQEDVVTVVKDAGLRGRGGA 206 Query: 59 GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW K S D ++V NADE +PG DR ++ +PH++IEG ++ +AIG Sbjct: 207 GFPTGVKWEAGLKAVSGDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIG 266 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A ++YVR E+ E L A+D+ A+G+LG + + D+ + GAGA++CGEET Sbjct: 267 ASKGYVYVRAEYPIAVERLGNAIDQARAAGILGEHILGSNFSFDLEIRIGAGAFVCGEET 326 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 +LL S+EGK+G+PR KPPFP GL+ PT +NNVE++A V I+ G+ WY FG E + Sbjct: 327 SLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANVAPIVLNGSQWYRQFGTEKS 386 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+F+++G + +E M ++ GG G A+ GG S CL Sbjct: 387 AGTKVFALAGDIVNAGIIEVPMGTILGDI-IYKIGGGIIGGKKFKAIQSGGPSGGCLTKE 445 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ L ++G+ +G+ +IVM+ T ++ F ESCG+C PCR GT Sbjct: 446 HL-NTPVDYESLAKLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 504 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ +G + ++DLL E++ I+ +C LG A P+ +K FR E I Sbjct: 505 RMLEILERITEGKGEPGDLDLLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRDEYEAHI 564 Query: 417 DQYH 420 H Sbjct: 565 YDKH 568 >gi|238798408|ref|ZP_04641889.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC 43969] gi|238717722|gb|EEQ09557.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC 43969] Length = 439 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 13 QPVWLDEYRSKTGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 73 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416 >gi|238751244|ref|ZP_04612738.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380] gi|238710518|gb|EEQ02742.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380] Length = 439 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 13 QPVWLDEYRSKTGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 73 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416 >gi|154508642|ref|ZP_02044284.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC 17982] gi|153798276|gb|EDN80696.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC 17982] Length = 434 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 201/418 (48%), Positives = 250/418 (59%), Gaps = 12/418 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I TN +G + +L SRG + ++K I+ VK SGLRGRGGAGF +G+KW Sbjct: 14 ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+R Sbjct: 74 SFLPPADGG-PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AV E +G+LG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT VNNVE+IA V I R W++ G E ++G +FS+SG Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPEWFASMGTEKSKGHGIFSVSG 245 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HVN P E IT ELIE G L PGGSS P ++ +DY+ Sbjct: 246 HVNNPGQFEAPFGITMRELIEMAGG--IRDGHKLKFWTPGGSSTPIFTEDEL-DTPLDYE 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A+ V D + +++ I R S FY+HESCG+CTPCREGT WM ++M RL Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +G + ++DLL E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420 >gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191] gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191] Length = 620 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 148/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI + + + +++ +S G + + K L E + I E+K SGLRGRGG Sbjct: 134 FYRKQHRILLKDCGKINPEDINEYISHGGYSALAKCLNELKEEGTIEEIKKSGLRGRGGG 193 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F + + Y++ N DE +PG DR ++ PH +IEG +I FA GA Sbjct: 194 GFPTGLKWQFT-RASKGKQKYMICNGDEGDPGAYMDRSLLEGNPHAVIEGMIIGGFATGA 252 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 Y+R E+ +QAA+D Y +GLLG N + D+ + +GAGA++CGEETA Sbjct: 253 SKGLFYIRAEYPLAISRVQAAIDAAYKAGLLGKNILGSKFSYDLEIRYGAGAFVCGEETA 312 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G P KPPFP+ GL+GCPT++NNVE++A +P I+ G+ W+S G + Sbjct: 313 LMRSIEGQRGTPTPKPPFPSVKGLWGCPTSINNVETLANIPLIIYNGSEWFSKIGSGKST 372 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V +E M IT E++ G + AV GG S +PA + Sbjct: 373 GTKVFAMTGKVKSSGLIEVPMGITIKEVVFDIGEG-AYDGRVIKAVQTGGPSGGVIPAEK 431 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + Y+ L E GS +G+ +IVMD S ++ F ESCG+C PCR G Sbjct: 432 -FDMPITYESLIEAGSMMGSGGLIVMDNSDCMVDIAKFYLEFCVEESCGKCVPCRIGGYQ 490 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++++++ + +G + + ++ ++ ++CALG A P+ +K+F +E + Sbjct: 491 LLKILKDISEGKEVGDYKEKIGNLALTMQKASLCALGQTAPNPVLSCLKSFGHEFDEHVK 550 Query: 418 QYHRCN 423 + H C Sbjct: 551 EKH-CP 555 >gi|159039970|ref|YP_001539223.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola CNS-205] gi|157918805|gb|ABW00233.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola CNS-205] Length = 443 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 192/407 (47%), Positives = 246/407 (60%), Gaps = 8/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + + K L D +I VK SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWRIGTYERLDGYAALRKALGAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDG 83 Query: 76 R----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 R PHYLVVNADE EPGTCKD +M H+PH+LIEG +IAS+AI A+ A+IY+RGE + Sbjct: 84 RSPTRPHYLVVNADEGEPGTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVH 143 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 L+ AV E YA G LG N G+D+D++VH GAGAYICGEETALL+SLEG +GQPR Sbjct: 144 AARRLRHAVQEAYARGYLGRNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPR 203 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 L+PPFPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG V Sbjct: 204 LRPPFPATHGLYASPTVVNNVGTIASVPYIVSGGADWWRTMGTEKSSGPMIYSLSGRVVN 263 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E SM IT ELIE G +L PGGSS P L A + +D++ + Sbjct: 264 PGQYECSMGITLRELIELAGGM--QPGHSLRFWTPGGSSTPLLTAEHL-DVPLDFEEVAA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G Sbjct: 321 AGSILGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++D L + NI GR+ C LGD A P+ +K F+ + I+ Sbjct: 381 TQEDLDTLLDTCDNILGRSFCGLGDGATSPVTSSLKYFKQDYLDYIE 427 >gi|332162385|ref|YP_004298962.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666615|gb|ADZ43259.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 455 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 29 QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 88 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 89 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 327 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 386 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 432 >gi|255019912|ref|ZP_05291987.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] gi|254970692|gb|EET28179.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] Length = 428 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 210/415 (50%), Positives = 263/415 (63%), Gaps = 6/415 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 N LS S G + + KI +G + +I E+K S LRGRGGAGF TG+KW Sbjct: 8 LKNRGIPDSHRLSVYESTGGYQALRKIFAEGITPEQVIAEMKTSALRGRGGAGFPTGLKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMPK S YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA +I++R Sbjct: 68 SFMPKGVSG-TKYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGARAGYIFIR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEFI ++AA++E YA+G LG + D+ VH GAGAYICGEETAL+E+LEGK Sbjct: 127 GEFIEPIRRVEAALEEAYAAGFLGERILGQEFSFDLYVHRGAGAYICGEETALMEALEGK 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 KGQPR KPPFPA+ GLYG PTT+NNVE+ A VP I+ RG W+ G+ NN GTK+FS++ Sbjct: 187 KGQPRFKPPFPASYGLYGRPTTINNVETFASVPDIIVRGGQWFLDLGKANNGGTKIFSVT 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E M F EL++ G +L AVIPGG+S L M MDY Sbjct: 247 GQVQRPGNYEVPMGTPFPELLDMAGG--LHPGRSLKAVIPGGTSTAMLAGATMMECTMDY 304 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + + GS LG +VIV+D S I++ + R++ FY HESCGQCTPCREG GW+ RVM R+ Sbjct: 305 DSIAKAGSALGAGSVIVIDDSVCIVRVVERIARFYMHESCGQCTPCREGMGWLWRVMHRI 364 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G + ++IDLL V IEGRTICAL D P+ IK FR E I Sbjct: 365 ENGQGRAQDIDLLLNVGARIEGRTICALADGGVAPVVSSIKLFRDEYEHHIRHGQ 419 >gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium ulcerans ATCC 49185] gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] Length = 594 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 149/422 (35%), Positives = 233/422 (55%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61 + R N + +++ D + + ++K+L+ +I E+ ASGLRGRGG GF Sbjct: 112 KQERRALKNCGVIDPENIEDFLKNDGYKGIEKVLKTMSNRDVIKEIFASGLRGRGGGGFF 171 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW + ++ Y+V NADE +PG DR I+ +PH++IEG +IA +AIGA Sbjct: 172 TGIKWEIASNIEAE-QKYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKG 230 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ L A++ G LG N ++ DI + GAGA++CGEETAL+ Sbjct: 231 LVYIRAEYPLAIHRLSVAIEAARKKGFLGKNILGTDFEFDIELKFGAGAFVCGEETALIH 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G+P KPP+PA G + PT VNNVE++ VP IL G W+ G E + GTK Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWDKPTVVNNVETLVNVPGILLYGKEWFREVGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N VE M I+ E+I + GGI+ AV GG S CL + Sbjct: 351 VFALAGKINNVGLVEVPMGISLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDL-D 408 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L + GS +G+ ++VMD ++ F ESCG+CTPCR G + Sbjct: 409 TPIDFDTLSKKGSIMGSGGMVVMDEDDCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLYE 468 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++++ +G ++ LL E+S+ I+ ++C LG +A P+ + F E + Sbjct: 469 MLDKITQGRGTLEDLHLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVD-K 527 Query: 421 RC 422 RC Sbjct: 528 RC 529 >gi|269794078|ref|YP_003313533.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542] gi|269096263|gb|ACZ20699.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542] Length = 449 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 198/402 (49%), Positives = 252/402 (62%), Gaps = 5/402 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L ++ G ++ + L + ++ VK SGLRGRGGAGF TGMKW F+P Sbjct: 18 SWTLETYLANGGYEGLRAALAQPAADVVQTVKDSGLRGRGGAGFPTGMKWGFLP-APDGG 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVNADESEPGTCKD +M P TL+EG I S+AIG H AFIYVRGE + L Sbjct: 77 PRYLVVNADESEPGTCKDIPLMLASPQTLVEGVAITSYAIGCHHAFIYVRGEVLHVYRRL 136 Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV+E YA+G LG + G+D+D+ VH GAGAYICGEETALL+SLEG +GQPRLKPPF Sbjct: 137 LKAVEEAYAAGYLGKDVLGSGFDLDVTVHAGAGAYICGEETALLDSLEGLRGQPRLKPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT VNNVES+A VP I+ RGASW++ G E + G LFS+SGHV +P E Sbjct: 197 PAVAGLYARPTVVNNVESVASVPQIVARGASWFTSMGTERSAGHGLFSLSGHVTHPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT EL++ G G L PGGSS P A + +DY+ + GS L Sbjct: 257 APLGITLRELLDMAGG--VRGGRALKFWTPGGSSTPIFTAEHL-DVPLDYESVAAAGSML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL G + +I Sbjct: 314 GTRALQIFDETTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRLEAGQGTQGDI 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 D L + NI GR CALGD A I ++ FR E + Sbjct: 374 DTLLDTCDNILGRAFCALGDGATSCITSAVQYFREEFEAGMH 415 >gi|238784996|ref|ZP_04628994.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC 43970] gi|238714112|gb|EEQ06126.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC 43970] Length = 439 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 174/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ ++N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 13 QPVWLDEYRSKTGYLGAEKALKGMAPPDVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 73 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416 >gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] Length = 597 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 154/417 (36%), Positives = 231/417 (55%), Gaps = 5/417 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + ++ + SL D ++RG ++ + + L+ D II EV+ SGLRG+GGAGF TG KW Sbjct: 116 VLKDVGIIDPLSLDDYIARGGYEGLKRALKMTPDEIITEVEKSGLRGKGGAGFPTGRKWR 175 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 P Y+V N DE +PG D M PH +IEG +I + AIGA +Y+R Sbjct: 176 TAAGYD-VFPKYIVCNGDEGDPGAFMDGSTMEGSPHAVIEGMIIGALAIGAEEGVLYIRD 234 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R+ +Q A+D+ YA+G+LG + + +D+ + G GA++CGE TAL+ S+EG+ Sbjct: 235 EYALARDHIQHAIDDAYAAGILGESILGTDHKLDLSIVRGGGAFVCGESTALMASIEGRV 294 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR K GL+ PT +NNVES+A +PTILR G Y+ G +N++GTK+F++ G Sbjct: 295 GEPRAKYIRSVQRGLFDNPTVLNNVESLASIPTILRDGGEKYAEIGTDNSKGTKVFAMVG 354 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V + VE M T L GG G A+ GG S C+P + +D+D Sbjct: 355 KVKHTGLVEVPMGTTLRTL-IYDIGGGIIGDRPFKAIQTGGPSGGCIPEE-LLDLPVDFD 412 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L E G+ +G+ +IVMD + +++ F ESCG+CTPCREG M ++ + Sbjct: 413 TLVEYGAMMGSGGMIVMDDRSCMVEVARYYVDFLCEESCGKCTPCREGLRQMRAILTDIC 472 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +G + +I+LL + ++ ++CALG A P+ IK FR E ID C Sbjct: 473 EGRGKPGDIELLERIGHTMQDASLCALGRTAPNPVLTTIKFFRDEYEAHID-GKECP 528 >gi|208780263|ref|ZP_03247605.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG] gi|208743912|gb|EDZ90214.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG] gi|332678972|gb|AEE88101.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida Fx1] Length = 391 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 201/383 (52%), Positives = 250/383 (65%), Gaps = 4/383 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 + II E+K SGLRGRGGAGF TG+KWSFMP+ Y+V N+DE EPGTCKDR+I+R Sbjct: 7 PEQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPG-QKYVVCNSDEGEPGTCKDREILR 65 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYD 158 + PH LIEG IA + +GA + Y RGEF + A+ E Y +GLLG+N K G Sbjct: 66 NNPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGIS 125 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ GAGAYICGEETALL SLEGKKG+PR KPPFPA GLY PT +NN E+ A VP Sbjct: 126 FDLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVP 185 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL+ G W+ G E + GTKLF +SGHV VE + + F EL++ CGG+R G Sbjct: 186 AILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK 244 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 L AVIPGGSS L A +M MDY+ + GS LG+ AV+V+D +T +++ + RL+ Sbjct: 245 -LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLAD 303 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 FY ESCGQCTPCREGTGW+ R + R+V G + +ID L V+ NIEG TIC LGDAAA Sbjct: 304 FYYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAA 363 Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421 WP+Q I FR I+ R Sbjct: 364 WPVQSYIDKFRHEFVYMIENNGR 386 >gi|225871980|ref|YP_002753434.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC 51196] gi|225792115|gb|ACO32205.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC 51196] Length = 437 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 199/415 (47%), Positives = 265/415 (63%), Gaps = 5/415 (1%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 +G + + + +V K LE D IINE+K SGLRGRGGAGF TGMKWSF+PK Sbjct: 17 RFGRGAVDIDRYIELEGYSSVRKCLEMEPDAIINEMKTSGLRGRGGAGFPTGMKWSFVPK 76 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 + +P Y++VN DESEPGTCKDR I H+PH++IEG +IA AIGA FIY+RGE+ Sbjct: 77 QSA-KPKYVLVNGDESEPGTCKDRLIFEHDPHSVIEGTMIAGLAIGAKMGFIYLRGEYRY 135 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 + ++ AV YA G LG +D D++V GAGAY GEE+AL+ESLEGK+G PR Sbjct: 136 LIQIMEKAVAAAYAKGFLGKGIFGSQHDFDVVVQTGAGAYEVGEESALMESLEGKRGVPR 195 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 +KPPFPA VGLYG PT +NN E++A VP I R GA+ Y+ +G E N GT+LF ISGHV Sbjct: 196 IKPPFPAVVGLYGGPTVINNAETLASVPHIFRIGAAEYAKYGTERNGGTRLFCISGHVEK 255 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E M ++I + GGI G L AV+PGGSSVP L ++ MD+D + + Sbjct: 256 PGVYELPMGYNLKKMIYEVAGGI-LGGKKLKAVVPGGSSVPVLLPDEI-DIGMDFDQVAK 313 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LG+ V+V+D S +++ R FY+HESCG C PCREGT W+ + + RL G A Sbjct: 314 AGSMLGSGGVVVLDESVCMVEFALRTIKFYRHESCGWCIPCREGTDWLQKSITRLHMGGA 373 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++I+ + +++N+ GRT C LGDAAA P G +K FR E+ ++ C + Sbjct: 374 VDKDINNIQYIAENMLGRTFCPLGDAAAMPTIGFVKKFRKEFEDHLN-GKGCPYH 427 >gi|318606464|emb|CBY27962.1| NADH-ubiquinone oxidoreductase chain F [Yersinia enterocolitica subsp. palearctica Y11] Length = 455 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 29 QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 88 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 89 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 327 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 386 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 387 PGDIETLEQLCRFLGSGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 432 >gi|331658365|ref|ZP_08359327.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206] gi|331056613|gb|EGI28622.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206] Length = 421 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 167/394 (42%), Positives = 233/394 (59%), Gaps = 5/394 (1%) Query: 28 HWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE Sbjct: 10 GYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADE 69 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I +L+ A+ E + Sbjct: 70 MEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEA 129 Query: 147 GLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G P Sbjct: 130 GLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKP 189 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVE++ VP IL G WY + + GTKL SG V P E T E+ Sbjct: 190 TCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREI 249 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 +E + GG+R G A PGG+ L + M+++ + + GS LGTA + +D Sbjct: 250 LEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDH 307 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 +++ + L F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + Sbjct: 308 EINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFL 367 Query: 386 -EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G+T CA A P+Q IK FR E I Q Sbjct: 368 GPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 401 >gi|218961474|ref|YP_001741249.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like) [Candidatus Cloacamonas acidaminovorans] gi|167730131|emb|CAO81043.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like) [Candidatus Cloacamonas acidaminovorans] Length = 520 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 159/413 (38%), Positives = 249/413 (60%), Gaps = 6/413 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62 ++RI N + +++ D + G + ++K L + II EVK SGL+GRGGA F Sbjct: 107 ENRIVLRNSGIIDPENIDDYIGAGGYVALEKALTNMQPNDIIAEVKKSGLKGRGGAAFPA 166 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSF Y+VVNADE EPGT KDR IM +PH L+EG ++ + A+GA A+ Sbjct: 167 GLKWSFTS-ALDVPQKYVVVNADEGEPGTFKDRLIMEGDPHQLLEGIILCARAVGASKAY 225 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE+ L+ A+ + Y G+LG N G+D+DI + GAGAY+CGEETAL+ES Sbjct: 226 IYIRGEYKLCIARLEKAIKQAYDYGILGKNIFDSGFDLDIELKIGAGAYVCGEETALIES 285 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG +G PR KPPFP GL+ PT VNNVE++A VP I+ +GA + +G + GTK+ Sbjct: 286 LEGNRGTPRWKPPFPGVEGLWKAPTIVNNVETLANVPFIIAKGADEFLQYGTPDCPGTKV 345 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 ++I G V YP E M T +I + GG++ G+ A + GG++ LP ++ Sbjct: 346 YTILGDVAYPGLCEVDMGTTLRTIINDYAGGMKKGF-RFKAALVGGAAGVILP-DRLLDV 403 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MD+ L + + LG+ A++V++ I+ +W + F++HESCG+C+PC+ GT + ++ Sbjct: 404 KMDFTSLNQYSAVLGSGAILVLNEHQSIVDLLWSILRFFRHESCGKCSPCKNGTQQLYQL 463 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + ++ KG +++L+ +++ ++ + CALG + ++ I+NF E Sbjct: 464 ISKIRKGNGTMEDVNLMLLIAETMQQTSFCALGQSPIMAVRSAIENFTDEFIE 516 >gi|255037830|ref|YP_003088451.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM 18053] gi|254950586|gb|ACT95286.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM 18053] Length = 446 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 198/420 (47%), Positives = 259/420 (61%), Gaps = 16/420 (3%) Query: 18 KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ +G + V+K ++ + ++ E K SG+RGRGGAGF GMKW F+ K Sbjct: 16 ETFDVYRKQGGYTAVEKAIKTMTPEEVVEEAKKSGVRGRGGAGFPMGMKWGFLAK-PEGV 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLV NADESEPGT KD +M+ PH LIEG +I+SFA+GA+ +FIYVRGE + L Sbjct: 75 PRYLVCNADESEPGTFKDHHLMKCIPHLLIEGMIISSFALGANKSFIYVRGELMYVIRIL 134 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ E A G LG N GYD++++V G GAYICGEETALLESLEGK+G PR KPPF Sbjct: 135 EKAIAEAKAQGFLGKNILGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPF 194 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT VNNVESI+ +P I+ G Y+ G + GTKL S SGH+ P E Sbjct: 195 PAVKGLYQSPTVVNNVESISNMPWIINNGGDAYAQIGIGRSTGTKLISASGHIQKPGVYE 254 Query: 256 ESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDG 307 + ++ +E + +++CGGIR G L A++ GGSSVP LPA + +M Y+ Sbjct: 255 IELGVSVEEFLNSDEYCGGIRKGHH-LKALVAGGSSVPILPANLIMKTAAGEDRLMTYES 313 Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 L G+ LG+ IV D + I++ W S FY HESCGQC+PCREGTGWM +V+ Sbjct: 314 LSDGGFATGTMLGSGGFIVFDETACIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLH 373 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 R+ G +IDLL ++SK IEG TIC LGDAAAWP+ I++FR I Sbjct: 374 RIEHGHGSMHDIDLLVDISKKIEGNTICPLGDAAAWPVASAIRHFRDEFVWHITNPQEAT 433 >gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Geobacter metallireducens GS-15] Length = 569 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 156/425 (36%), Positives = 245/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q ++ N + + + + ++ G + + L E D + EV SGLRGRGGA Sbjct: 119 FLARQMKVVLANSGSINPERVEEYVAAGGYGALAHALHELTPDDVCREVSVSGLRGRGGA 178 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ K + Y+V N DE +PG DR IM +PH ++EG +A +AIGA Sbjct: 179 GYPTGVKWNLARKANGE-RKYVVANGDEGDPGAYMDRSIMESDPHRILEGMALAGYAIGA 237 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 FIYVRGE+ L+AA+ +GLLGS ++ I + GAGA++CGEET+ Sbjct: 238 EQGFIYVRGEYYLAGRRLEAAIRAAERAGLLGSRVFGSNFNFRIDIRTGAGAFVCGEETS 297 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ G++GQPR +PP+PA GL+GCPT +NNVE++A VP I+ +G +WY+G G ++ Sbjct: 298 LMASIMGRRGQPRQRPPYPAQQGLWGCPTLINNVETLATVPAIMGKGGNWYAGIGSAGSK 357 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+++++G V +E M T E++ GGI G A GG S C+P+G+ Sbjct: 358 GTKVYALAGQVEIAGLIEVPMGTTLREVVFDIGGGIP-GGKRFKAAQSGGPSGGCIPSGE 416 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ ++ +G+ +G+ +I+MD ++ + F + ESCG+C PCR GT Sbjct: 417 L-DTPLDYESMQRVGTIMGSGGLIIMDETSCMPDVASFFLDFCRDESCGKCVPCRVGTVE 475 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M R++ R+ G A ++ L E+ + + ++C LG A P+ ++ FR E I Sbjct: 476 MHRLLRRITGGTATMDDLAKLEELCELVGAASLCGLGMTAPNPVLSTLRYFRDEYVEHIS 535 Query: 418 QYHRC 422 + HRC Sbjct: 536 R-HRC 539 >gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] Length = 488 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 147/424 (34%), Positives = 232/424 (54%), Gaps = 7/424 (1%) Query: 3 TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60 Q RI T N + +++ D + ++ + + G +I ++K SGLRGRGG GF Sbjct: 4 KKQLRIATRNCGFIDPENIEDYIGVRGYEALASAITNGTPAGVIEQMKKSGLRGRGGGGF 63 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+F +D Y+V NADE +PG DR ++ +PH+++E I +AIGA Sbjct: 64 PTGVKWAFAAANQAD-QKYVVCNADEGDPGAFMDRALLEGDPHSIVEAMAICGYAIGASI 122 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +Y+R E+ + L ++++ GLLG N G++ DI + +GAGA++CGEETAL+ Sbjct: 123 GVVYIRAEYPLAIKRLIKSIEDARDYGLLGRNILGTGFNFDIELKYGAGAFVCGEETALI 182 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG +G+P KPPFPA+ G +G PT VNNVE++A +P IL +GA W+S G EN++GT Sbjct: 183 RSMEGSRGEPYTKPPFPASAGYWGKPTIVNNVETLANIPPILVKGADWFSSIGTENSKGT 242 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+++G + +E M IT E+I + GG AV GG S L + + Sbjct: 243 KVFALAGKITNVGLIEVPMGITLGEIIFEIGGGCP-NGKQFKAVQTGGPSGGALTSRDI- 300 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD L GS +G+ +IVMD ++ F E+CG+CTPCR G+ + Sbjct: 301 DVPIDYDNLIARGSMMGSGGMIVMDEDNCMVDVAKFFLDFTMDETCGKCTPCRIGSKRLH 360 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ R+ +G +++ L + I+ +C G P+ I+ F + Sbjct: 361 EILCRITQGEGTLEDMENLQCLGATIKDTALCGFGQTMPNPVLSTIRTFMDEYRAHVVD- 419 Query: 420 HRCN 423 +C Sbjct: 420 KKCP 423 >gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 622 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 158/426 (37%), Positives = 241/426 (56%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 M Q RI N + LS ++RG + + + L + +I E+ ASGLRGRGGA Sbjct: 135 MYRAQRRIALRNCGHINPLRLSHYLARGGYAGLHRALTGLSPEQVIEEITASGLRGRGGA 194 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW F + P Y++ NADE +PG DR I+ +PH+++EG +I+ +A+GA Sbjct: 195 GFPTGRKWQFCREAP-GAPKYVICNADEGDPGAFMDRSILEGDPHSVVEGLIISGYAVGA 253 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ +LQ AV + +GLLG N G+D D+ + GAGA++CGEETA Sbjct: 254 SRGYVYVRAEYPLAVSTLQQAVAQARKAGLLGRNILGSGFDFDVEIKEGAGAFVCGEETA 313 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG++G PR +PP+PA GL+G PT +NNV+++A+ I+ A+ ++ G +R Sbjct: 314 LIASLEGRRGMPRPRPPYPAVSGLFGRPTNINNVKTLAMAAYIMAGHAADFAAMGTGQSR 373 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT +F+++G+V VE M E++ GGI L AV GG S CLPA Sbjct: 374 GTCVFALAGNVRRMGLVEVPMGTPLGEVVFDIGGGIPEN-RQLKAVQIGGPSGGCLPAEA 432 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +DY+ L G+ +G+ ++VMD +T ++ F + ESCG+C PCR GT Sbjct: 433 -TDVGLDYESLSLSGAIMGSGGMVVMDENTCMVDVARYFLTFVQAESCGKCVPCRLGTRQ 491 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+ G + +I+ L ++ I+ ++CALG A P+ ++ F I Sbjct: 492 MLAILERITAGDGRPEDIETLEGLAAQIKKTSLCALGGTAPNPVLTTLRYFHDEYTAHIR 551 Query: 418 QYHRCN 423 RC Sbjct: 552 D-RRCP 556 >gi|238763930|ref|ZP_04624887.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC 33638] gi|238697898|gb|EEP90658.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC 33638] Length = 445 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 171/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 18 QPVWLDEYRSKNGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 77 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 78 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 137 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +G+LG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 138 HLRRAIAEATEAGMLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 197 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 198 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 257 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E I+ E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 258 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 315 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 316 GSRLGTALAMAVDHEIGMVPLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 375 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 376 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 421 >gi|238759966|ref|ZP_04621119.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236] gi|238701793|gb|EEP94357.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236] Length = 440 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 172/409 (42%), Positives = 242/409 (59%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 13 QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 73 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 133 HLRRAISEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E I+ E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 253 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIANK 419 >gi|153007185|ref|YP_001381510.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter sp. Fw109-5] gi|152030758|gb|ABS28526.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. Fw109-5] Length = 441 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 208/423 (49%), Positives = 279/423 (65%), Gaps = 8/423 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + I T +G +L + G + +DK L I++EVK S LRGRGGAGF+TG Sbjct: 3 ETLILTRRWGKPDSAALRTYRADGGYAALDKALGMEPAAIVDEVKRSNLRGRGGAGFATG 62 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW+F+PK RP YL VNADESEPGT KDR I+ H+PH LIEG I +A+ H A++ Sbjct: 63 LKWTFLPKDI--RPRYLTVNADESEPGTFKDRYIIEHDPHMLIEGIAITCYALDIHLAYV 120 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGEF R+ L+AA++E A+G+LG K +D+D+ VH GAGAYICGEE+ALLES Sbjct: 121 YIRGEFARQARILEAAIEEARAAGILGQRLLGKKDFDLDVFVHRGAGAYICGEESALLES 180 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGKKG PRLKPPFPA VGL+G PT +NNVE+IA VP I+ G ++G G + GT+L Sbjct: 181 LEGKKGYPRLKPPFPAVVGLWGKPTIINNVETIANVPWIVANGGDAFAGLGVGKSGGTRL 240 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F +SGHVN P E+ + +LI + CGGI GG + AVIPGGSS P L ++ Sbjct: 241 FGVSGHVNRPGVFEKPVDYNLKKLIMEDCGGIPGGRK-VKAVIPGGSSSPVLRGDEI-DI 298 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +++D +K GS G+ VIV D ST +++A+ R+S FY ESCGQCTPCREGT WM + Sbjct: 299 SLEFDAVKAAGSMSGSGGVIVFDDSTCMVRALARISKFYAEESCGQCTPCREGTSWMEGI 358 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +E++ G ++ L +++ NI G+TICALGDAA+ P+Q +K FR +++ R Sbjct: 359 VEKIEHGHGTAADVAKLEQIAGNIGGQTICALGDAASMPVQSFVKKFRDEFLRHVEE-RR 417 Query: 422 CNF 424 C F Sbjct: 418 CPF 420 >gi|304312244|ref|YP_003811842.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] gi|301797977|emb|CBL46199.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] Length = 423 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 164/424 (38%), Positives = 234/424 (55%), Gaps = 7/424 (1%) Query: 6 DRIFTNLYG--LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 +++ T G + L D G ++ L +++ VKAS LRGRGGAGF TG Sbjct: 2 EKVLTRHIGQGMNPPRLVDYQQSGGYEGFRNALRMKPAEVVDLVKASNLRGRGGAGFPTG 61 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+P + Y++ NADE EPGT KDR ++ +PH +EG +IA+ A+ A +I Sbjct: 62 MKWSFVPPGEPGQVRYVIANADEMEPGTYKDRWLLEGDPHQFLEGMMIAAHAVQALTGYI 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 ++R E+ LQ A++E + LLG N G++ + +H AG YICGEETAL+ SL Sbjct: 122 FLRCEYTLAARRLQEAIEENTRANLLGKNILGSGFNFSLHLHSSAGRYICGEETALINSL 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG++ PR KPPFP GL+G PT VNNVE+ +P ILR G W+ G G + GTK+F Sbjct: 182 EGRRAVPRAKPPFPQVSGLWGKPTVVNNVETFCNLPHILRHGPEWFIGLGLVKDAGTKIF 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 SG V P E M E+ EK+ GG++ G+ +PGG S L Q Sbjct: 242 GASGRVKTPGAWELPMGTPIREIFEKYAGGMQDGY-RFRGFLPGGGSTDFL-VEQHLDLP 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 M+YD + + GS +GT +IV+D T + + L F+ ESCG CTPCR+G ++ Sbjct: 300 MEYDVIGKAGSRMGTGQLIVLDDRTCPVAMVLNLVRFFAQESCGWCTPCRDGLPHAGHIL 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + +G Q R+++ L ++ + G T CAL A P+Q +K FR E I Q Sbjct: 360 MEIEQGRGQARDLEKLEGFTRFLAPGNTYCALAPGAVEPLQSALKYFREDFERHIQQ-KG 418 Query: 422 CNFQ 425 C ++ Sbjct: 419 CPYR 422 >gi|293191721|ref|ZP_06609278.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309] gi|292820493|gb|EFF79475.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309] Length = 434 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 201/418 (48%), Positives = 251/418 (60%), Gaps = 12/418 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I TN +G + +L SRG + ++K I+ VK SGLRGRGGAGF +G+KW Sbjct: 14 ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+R Sbjct: 74 SFLPPADGG-PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AV E +G+LG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT VNNVE+IA V I R W++ G E ++G +FS+SG Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPKWFASMGTEKSKGHGIFSVSG 245 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HVN P E IT ELIE G L PGGSS P ++ ++DY+ Sbjct: 246 HVNNPGQFEAPFGITMRELIEMAGG--IRDGHKLKFWTPGGSSTPIFTEDEL-DTLLDYE 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A+ V D + +++ I R S FY+HESCG+CTPCREGT WM ++M RL Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +G + ++DLL E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420 >gi|189219241|ref|YP_001939882.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum infernorum V4] gi|161075751|gb|ABX56623.1| formate dehydrogenase beta subunit [Methylacidiphilum infernorum V4] gi|189186099|gb|ACD83284.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum infernorum V4] Length = 522 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 156/413 (37%), Positives = 229/413 (55%), Gaps = 5/413 (1%) Query: 2 LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q R IF + SL + G + + K +E G+ +I+EV SGLRGRGGA F Sbjct: 99 LKNQKRLIFERIGRNDPLSLDSYVECGGFIGLRKAIEWGQSKVIDEVYKSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S ++V NADE + GT DR +M +P LIEG +IA FA+GA Sbjct: 159 PTGIKWKTTWQATS-SQKFIVCNADEGDSGTFSDRMVMEGDPFLLIEGMMIAGFAVGADK 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ E L A+ C ++GLLG + D+ V GAGAY+CGEETALL Sbjct: 218 GYIYLRSEYPLAYEILNEAIFICKSAGLLGKRIFGSSFSFDLEVFLGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGK+G R +PP PA GL+G PT +NNV +++ VP IL GA Y+ G ++GT Sbjct: 278 DSLEGKRGMVRPRPPLPAVKGLWGKPTVINNVITLSSVPWILSHGAEAYASLGVNRSKGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +SG++ YP VE I+ ELI GG R G L A+ GG P LP + Sbjct: 338 LPVQLSGNLQYPGLVEIPFGISLKELIYGFGGGTRSGRP-LKAIQIGGPLGPYLP-DSLL 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ L ++ +G ++ D S ++ F ESCG+CTPCR G+ M Sbjct: 396 DIPLDYEELSKIKGIVGHGGIVAFDDSANLAHMAHYAMEFCAEESCGKCTPCRIGSTRGM 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++E+++ G +RE++LL+++ + ++C LG +P+ ++ F Sbjct: 456 ELIEKIIMGKGSRRELELLFDLCDTMLNASLCGLGGMTPFPVLSALRYFPEDF 508 >gi|119714789|ref|YP_921754.1| NADH-quinone oxidoreductase, F subunit [Nocardioides sp. JS614] gi|119535450|gb|ABL80067.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614] Length = 440 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 206/424 (48%), Positives = 269/424 (63%), Gaps = 15/424 (3%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 DQ+R +L+ SRG + VD D +I+ VK SGLRGRGGAGF T Sbjct: 17 WDQER---------SWTLAAYESRGGYRAVDTAFAMEPDAVIDAVKESGLRGRGGAGFPT 67 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F+P+ + RP YLVVNADESEPGTCKD +M PHTL+EG +I+S+AI A+ AF Sbjct: 68 GMKWGFIPQD-NPRPKYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRANKAF 126 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+RGE + +Q AV E YA+G LG+N G+D+D++VH GAGAYICGEETALLE Sbjct: 127 IYIRGEVLHVIRRVQRAVQEAYAAGHLGTNIHGSGFDLDVVVHAGAGAYICGEETALLEG 186 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEG++GQPRL+PPFPA GLY PT +NNVESI+ VP+I+ RG +W++ G E ++G + Sbjct: 187 LEGRRGQPRLRPPFPAVAGLYASPTVINNVESISSVPSIIGRGHAWFASMGTEKSKGVGI 246 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 FS+SGHV P E + IT LI+ G L PGGSS P L A + Sbjct: 247 FSLSGHVKRPGQYEAPLGITLRTLIDLAGG--IREGHELKFWTPGGSSTPLLTAEHL-DV 303 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D++G+ GS LGT A+ + D S +++A+ R S FYKHESCG+CTPCREGT W+++V Sbjct: 304 PLDFEGVGSAGSMLGTRALQIFDDSVCVVRAVLRWSEFYKHESCGKCTPCREGTWWLVQV 363 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + L KG + ++DLL + NI GR+ CAL D A PI I+ FR + Sbjct: 364 LTALEKGDGTEEDLDLLLDQCDNILGRSFCALADGATSPIVSSIQFFRDEYVAHLTHGG- 422 Query: 422 CNFQ 425 C F Sbjct: 423 CPFD 426 >gi|292492184|ref|YP_003527623.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] gi|291580779|gb|ADE15236.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus Nc4] Length = 430 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 157/415 (37%), Positives = 235/415 (56%), Gaps = 7/415 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72 + + G + + K L E + VK S LRGRGGAGF TGMKWSF+P Sbjct: 18 REPLDIKQYQQVGGYQALRKALREMSPQEVQQTVKDSKLRGRGGAGFPTGMKWSFIPMGD 77 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + P YL+ NADE EPGT KDR +M +PH L+E +++S+A A A+I++R E+ Sbjct: 78 DAPHPKYLIANADEMEPGTFKDRLLMEGDPHQLLEAMIVSSYATQADVAYIFLRDEYKLA 137 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L+ A E GLLG + G+ ++ +H AG YICGEETAL+ SLEGK+ PR Sbjct: 138 AHRLKQAAQEAREQGLLGKHILGSGFSLEFHIHTSAGRYICGEETALVTSLEGKRAIPRQ 197 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPP+P GL+G PT VNNVE++ VP I+ GA WY R + GTK++ SG V P Sbjct: 198 KPPYPQTCGLWGKPTVVNNVETLCNVPHIINHGAEWYQNLSRSEDGGTKIYGTSGRVKRP 257 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M E++E++ GG++ G+ ++PGG+S L + MD+D + ++ Sbjct: 258 GAWELPMGTPIREILEEYAGGMQEGY-TFRGLLPGGASTDFLVEEHLE-TPMDFDAVMKV 315 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GT +I++D T + + L F+ ESCG CTPCR+G W+ +++ + +G Q Sbjct: 316 GSRMGTGGMIILDDKTCPVAMVLNLERFFAQESCGWCTPCRDGLPWVAHILQAIEEGRGQ 375 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++++L ++ + G+T C A P+Q +K FR E+ I + H C ++ Sbjct: 376 MEDLEILEMHTQFLGPGKTFCMHAPGAMEPLQSALKYFREDFEQHIREQH-CPWR 429 >gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 630 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 143/421 (33%), Positives = 225/421 (53%), Gaps = 5/421 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 ++ I + + + ++ + + L+K +I EVK++ LRGRGGAGF G Sbjct: 132 EEKLILEQCGFINPEDIDHYLAVEGYRGLVGALDKSSAAVIEEVKSARLRGRGGAGFPAG 191 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + D+ Y+V NADE +PG DR I+ PH ++EG I +A+GA +I Sbjct: 192 VKWEKCSQQD-DKEKYVVCNADEGDPGAFMDRAILESNPHLVLEGMAICGYAVGASKGYI 250 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ + L+ A+ + GLLG N + DI + G+GA++CGE TAL+ S+ Sbjct: 251 YVRAEYPKATSRLRIAISQAKEKGLLGKNILGSDFSFDIEIFEGSGAFVCGEGTALINSM 310 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 G G P +PP A GLYG PT +NNV++ A VP I++ GA W+ G E N GT +F Sbjct: 311 AGNMGIPETRPPRMAVSGLYGKPTVLNNVKTFAYVPGIVKNGAHWFRQKGTEQNPGTAVF 370 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ++ G + VE M T LI GI AV GG S CLP + Sbjct: 371 ALVGKIKNSGLVEVPMGTTLRRLIYDVGEGIPND-KKFKAVQIGGPSGGCLPEDAL-DIP 428 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D+D L + G+ +G+ ++V+D + ++ F +HESCG+CT CR GT M+ ++ Sbjct: 429 IDFDSLHDAGAIMGSGGIVVLDENDCMVTVARYFLEFTQHESCGKCTFCRLGTKHMLDIL 488 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + +G ++DLL E+++++ ++C LG A P+ ++ FR E +++ RC Sbjct: 489 TAITQGKGSLSDLDLLLELAEDVRDGSLCNLGGTAPNPVLTTLRYFRDEYEAHLEE-GRC 547 Query: 423 N 423 Sbjct: 548 P 548 >gi|302864906|ref|YP_003833543.1| NADH-quinone oxidoreductase subunit F [Micromonospora aurantiaca ATCC 27029] gi|302567765|gb|ADL43967.1| NADH-quinone oxidoreductase, F subunit [Micromonospora aurantiaca ATCC 27029] Length = 438 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 191/403 (47%), Positives = 248/403 (61%), Gaps = 5/403 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + + K L+ D +I +K SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M H+PH+L+EG +IAS+AI A+ A+IY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L++AVDE YA G LG N G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG + P Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIAEPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E SM IT ELIE G NL PGGSS P L A + +D++G+ GS Sbjct: 263 ECSMGITLRELIELAGGM--KPGHNLKFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G + Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +D L + NI GR+ C LGD A + +K F+ + I+ Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422 >gi|188995984|ref|YP_001930235.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] gi|188931051|gb|ACD65681.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] Length = 523 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 160/414 (38%), Positives = 230/414 (55%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +Q RI F + + S+ D S G + + K + + II E+K SGLRGRGGAG Sbjct: 101 FFKNQTRITFERVGLVDPLSIKDYQSNGGFLGLKKAISMKSEEIIEEIKKSGLRGRGGAG 160 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + K SD Y+V NADE + GT DR IM +P LIEG VIA A+GA Sbjct: 161 FPTGIKWETVFKTGSD-KKYVVCNADEGDSGTFSDRMIMESDPFLLIEGMVIAGLAVGAD 219 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ +E L A+D Y + LG N G D D+ V+ GAG+Y+CGEETAL Sbjct: 220 EGYIYLRSEYPLAKEVLTKAIDLAYKNRYLGKNILGSGKDFDLEVYVGAGSYVCGEETAL 279 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP+PA GL+ PT +NNV ++A VP I+R G Y +G +RG Sbjct: 280 LESLEGKRGVVRPKPPYPAINGLWNKPTLINNVNTLATVPWIIREGGDKYFNYGVGKSRG 339 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T +SG+V +P VE I+ +++ GG + G A+I GG +P M Sbjct: 340 TIAIQLSGNVKHPGLVEVPFGISIKDIVYGFGGGTKTGKKVKAALI-GGPFGIYIPES-M 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ L ++G +G +++V D D+ F ESCG+C PCR G+ Sbjct: 398 FDISIDYESLSKIGGTIGHGSIVVFDEEADLKYLARFAMEFCFIESCGKCAPCRIGSIRG 457 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++++L+ +R I + ++S+ + ++C LG A PI L K+F Sbjct: 458 LEILDKLLNQGRDERLISMFVDLSEVMINTSLCGLGGMAPKPILSLFKHFPEEF 511 >gi|300717647|ref|YP_003742450.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661] gi|299063483|emb|CAX60603.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661] Length = 448 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 167/404 (41%), Positives = 235/404 (58%), Gaps = 5/404 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q + S+ + DK L+ +D I+ VK SGL+GRGGAGFSTG+KWS MPK S Sbjct: 24 QPVFFDEYRSKNGYAGADKALKTMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDES 83 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ + +I++RGE+I Sbjct: 84 MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKTYRGYIFLRGEYIEAAV 143 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +G LG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 144 NLRRAIAEATEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 203 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA+ G +G PT VNNVE+++ VP IL G WY G ++ GTK+ SG V P Sbjct: 204 PFPASAGAWGKPTCVNNVETLSNVPAILANGVDWYKGISTSDDTGTKMMGFSGRVKNPGV 263 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M++ + + GS Sbjct: 264 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTESHL-DLPMEFASIGKAGS 321 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L + Q Sbjct: 322 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPG 381 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 382 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425 >gi|297616330|ref|YP_003701489.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297144167|gb|ADI00924.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 407 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 163/417 (39%), Positives = 250/417 (59%), Gaps = 11/417 (2%) Query: 2 LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ R+ YG + ++ D ++ G + +++K + +I EVK SGLRGRGGAGF Sbjct: 1 MAEELRVVLRNYGKINPLNIDDYINAGGYKSLEKARSMSQMDVIQEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + G KW F + +D Y++ NADE EPGT KDR IM +PH+++EG I +AIGA+ Sbjct: 61 NAGQKWMFAYQAQAD-QKYVICNADEGEPGTYKDRIIMESDPHSVLEGMAICGYAIGANK 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGE+ + L A+ + A G+LG DI V GAGAY+CGEETAL+E Sbjct: 120 GYIYCRGEYPYVVDILNTAIAQAKAKGVLGE-------FDIEVRMGAGAYVCGEETALIE 172 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G+PR KPPFP GL+G P+ VNNVE+ A + IL +GA WY+ G + GTK Sbjct: 173 SIEGSRGEPRYKPPFPPVSGLWGKPSIVNNVETFANIAIILEKGADWYASLGAPSYPGTK 232 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G V +E + T E++ GGI GG V GG+S +P + Sbjct: 233 VLTLTGDVVNKKFIEVPTNTTIREVVYGFGGGIPGGKKFKA-VQIGGTSGGFIPES-LLD 290 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + +G+ LG+ AV+VMD + DI+ + R++ F++HESCG+C PCREGT M + Sbjct: 291 TPIDFDSMAAIGATLGSGAVLVMDETRDIVDVVERIAKFFEHESCGKCAPCREGTMRMYK 350 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +M ++ KG +++ L+ + + + +C LG AA P+ IK+FR + ++ Sbjct: 351 LMSKVNKGQGTAKDVALMERLGRVMSVACLCGLGQAAPTPVLTTIKHFRADYDAKLQ 407 >gi|297192783|ref|ZP_06910181.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] gi|297151494|gb|EFH31198.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] Length = 456 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 195/410 (47%), Positives = 256/410 (62%), Gaps = 6/410 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L+ ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ + Sbjct: 36 SWTLATYRRHDGYEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGK 94 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 PHYLVVNADESEPGTCKD ++ PH+LIEG VIA +AI + AFIY+RGE + L Sbjct: 95 PHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRL 154 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 AV E Y +G LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 155 HEAVREAYEAGFLGKNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 214 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGHV P E Sbjct: 215 PAVAGLYACPTVVNNVESIASVPAILHKGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYE 274 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + IT +L++ G L PGGSS P + +DY+G+ GS L Sbjct: 275 APLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSML 331 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G ++ Sbjct: 332 GTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGNGVMSDL 391 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 D L +++ NI G++ CALGD AA PI +K FR E+ I Q C F Sbjct: 392 DKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITQGG-CPFD 440 >gi|315501191|ref|YP_004080078.1| NADH-quinone oxidoreductase, f subunit [Micromonospora sp. L5] gi|315407810|gb|ADU05927.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. L5] Length = 438 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 191/403 (47%), Positives = 248/403 (61%), Gaps = 5/403 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + + K L+ D +I +K SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M H+PH+L+EG +IAS+AI A+ A+IY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L++AVDE YA G LG N G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG + P Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIADPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E SM IT ELIE G NL PGGSS P L A + +D++G+ GS Sbjct: 263 ECSMGITLRELIELAGGM--KPGHNLKFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G + Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +D L + NI GR+ C LGD A + +K F+ + I+ Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422 >gi|238794603|ref|ZP_04638210.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC 29909] gi|238726089|gb|EEQ17636.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC 29909] Length = 439 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + +K L+ ++N VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 13 QPVWLDEYRSKNGYLGAEKALKGMTAPDVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 73 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 133 HLRRAISEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 252 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E I+ E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 253 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416 >gi|85059575|ref|YP_455277.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str. 'morsitans'] gi|84780095|dbj|BAE74872.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str. 'morsitans'] Length = 451 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 174/413 (42%), Positives = 237/413 (57%), Gaps = 9/413 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 Q L + S+ + K L +D I+ VK SGL+GRGGAGFSTG+KWS MPK Sbjct: 22 HQPVWLDEYQSKNGYVGARKALSGMAQDDIVTLVKDSGLKGRGGAGFSTGLKWSLMPKDP 81 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + YL+ NADE EPGT KDR +M PH L+EG +IA+FA+ A+ +I++RGE+I Sbjct: 82 AMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIAAFALKAYRGYIFLRGEYIEAA 141 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 +L+ A+ E +G LG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR K Sbjct: 142 ANLRRAIAEATEAGWLGKNILGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSK 201 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN----RGTKLFSISGHV 248 PPFPA+ G +G PT VNNVE++ VP IL G WY G + GTKL SG V Sbjct: 202 PPFPASAGAWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNSNDAGTKLMGFSGRV 261 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E IT E++E + GG+R G L A PGG+ L + MD++ + Sbjct: 262 KNPGVWELPFGITAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLIQDHL-DLPMDFENI 319 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + GS LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ L G Sbjct: 320 GKAGSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKLLRALESG 379 Query: 369 IAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 Q +I+ L ++ + + G+T CA A P+Q IK FR E I H Sbjct: 380 KGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRSEFEAGISVEH 432 >gi|145596571|ref|YP_001160868.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica CNB-440] gi|145305908|gb|ABP56490.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica CNB-440] Length = 443 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 188/407 (46%), Positives = 248/407 (60%), Gaps = 8/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + + K ++ D +I VK SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWRIGTYERLDGYAALRKAMQAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDG 83 Query: 76 ----RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 RPHYLVVNADE EPGTCKD +M H+PH+LIEG +IAS+AI A+ A+IY+RGE + Sbjct: 84 KAPTRPHYLVVNADEGEPGTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVH 143 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 L+ AV E YA LG N G+D+D++VH GAGAYICGEETALL+SLEG +GQPR Sbjct: 144 AARRLRHAVQEAYARNYLGKNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPR 203 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 L+PPFPA GLY PT VNNV +IA VP ++ GA+W+ G E + G ++S+SG V Sbjct: 204 LRPPFPATHGLYASPTVVNNVGTIASVPYLVLGGAAWWRTMGTEKSSGPMIYSLSGRVVN 263 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E SM +T ELIE G +L PGGSS P L A + +D++G+ Sbjct: 264 PGQYECSMGVTLRELIELAGGM--RPGHSLRFWTPGGSSTPLLTADHL-DVPLDFEGVAA 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G Sbjct: 321 AGSILGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQG 380 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++D L + NI GR+ C LGD A P+ +K F+ + ++ Sbjct: 381 TQEDLDTLLDTCDNILGRSFCGLGDGATSPVTSSLKYFKQDYLDYVE 427 >gi|304413375|ref|ZP_07394848.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella insecticola LSR1] gi|304284218|gb|EFL92611.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella insecticola LSR1] Length = 455 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 170/415 (40%), Positives = 241/415 (58%), Gaps = 7/415 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + L +++ VK +GL+GRGGAGF TG+KWS MPK S Sbjct: 21 QPLWLEEYRNKNGYQGAKIALTSMAPSEVVDVVKNAGLKGRGGAGFPTGLKWSLMPKDDS 80 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH LIEG +I +FA+ A+ +I++RGE+I Sbjct: 81 INIRYLLCNADEMEPGTYKDRLLMEQLPHLLIEGMLIGAFALKAYRGYIFLRGEYIEAAV 140 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 141 RLRQAISEAKGAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 200 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL +G WY G G+ N+ GTKL SG V P Sbjct: 201 PFPASSGVWGRPTCVNNVETLCNVPAILEQGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 260 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+ G L A PGG+ L A + MD++ + + Sbjct: 261 GVWELPFGITAREILEDYAGGMCDGLK-LKAWQPGGAGTDFLTADHL-DLPMDFEHIGKA 318 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCR+G W +++++ L +G Q Sbjct: 319 GSRLGTALAMAVDHQINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILQALERGEGQ 378 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +I+ L ++ + + G+T CA A P+Q IK FR I ++ +F Sbjct: 379 PGDIETLEQLCRLLGPGKTFCAHAPGAVEPLQSAIKYFRDEFAAGIAPKYQGHFD 433 >gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] Length = 628 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 156/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + N + + + + +S G ++ ++K+L E ++ E+ AS LRGRGG Sbjct: 141 FYKKQTRNVLKNCGHIDAEHIEEYISTGGYEALEKVLFEMTPQEVVEEISASNLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KWS + + ++ Y+V N DE +PG DR IM +PH +IEG +I ++A+GA Sbjct: 201 GFPTGYKWSQVARQE-EKTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGA 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ + SGLLG + + + ++ GAGA++CGE +A Sbjct: 260 REGYIYVRAEYPLAISRLKRAISQAEESGLLGDHILGTDFSFRLHINRGAGAFVCGEGSA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EGK+G PR+KPP GL+G PT +NNVE+ A VP I+ +GA W+ G E + Sbjct: 320 LTASIEGKRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIINKGAEWFRSIGPEKSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G V + +E M T E+I G G AV GG S CL + Sbjct: 380 GTKAFALTGSVRHTGLIEVPMGTTLREVIYDIGG-GIKGDGAFKAVQIGGPSGGCLVSKD 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D LK+MG+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 439 L-DVSLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ER+V G + ++DLL E++ I +C LG +AA P+ +K F E + Sbjct: 498 MLEILERIVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVMSTLKVFHDEYVEHVV 557 Query: 418 QYHRC 422 + +C Sbjct: 558 E-KKC 561 >gi|326329615|ref|ZP_08195937.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium Broad-1] gi|325952611|gb|EGD44629.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium Broad-1] Length = 436 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 207/422 (49%), Positives = 270/422 (63%), Gaps = 8/422 (1%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T +G + +L + G ++ +D L + + VK SGLRGRGGAGF TG+KW Sbjct: 8 VLTANWGDERAWTLPAYTATGGYEALDVALRMAPEDVQTTVKDSGLRGRGGAGFPTGVKW 67 Query: 67 SFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 F+P + P YLVVNADESEPGTCKD +M PHTL+EG +I+S+AI A AFIY Sbjct: 68 GFLPPPDPENPKPRYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRAERAFIY 127 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 VRGE + LQAAV E YA+G LG+N GYD++++VH GAGAYICGEETALL+SLE Sbjct: 128 VRGEVLHVIRRLQAAVREAYAAGHLGTNIHGSGYDLELVVHAGAGAYICGEETALLDSLE 187 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G++GQPRL+PPFPA GLY PT +NN ESIA VP I++ GASW++G G E + G +FS Sbjct: 188 GRRGQPRLRPPFPAVAGLYASPTVINNAESIASVPAIVKNGASWFAGMGTEKSAGVGIFS 247 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SGHV P E + IT +LIE G L PGGSS P + + Sbjct: 248 LSGHVKKPGQYEAPLGITLRQLIELAGG--VREGHELKFWTPGGSSTPLFTQEHL-DVTL 304 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D++G+ GS LGT A+ + D S +++A+ R + FYKHESCG+CTPCREGT W+++V+E Sbjct: 305 DFEGVAAAGSMLGTRALQIFDDSVCVVRAVLRWTEFYKHESCGKCTPCREGTWWLVQVLE 364 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 RL KG + ++DLL + NI GR+ CALGD A PI IK FR ++Q C Sbjct: 365 RLEKGDGKPEDLDLLLDQCDNILGRSFCALGDGATSPITSSIKYFRDEYLAHLEQGG-CP 423 Query: 424 FQ 425 F Sbjct: 424 FD 425 >gi|15806512|ref|NP_295223.1| NADH dehydrogenase I subunit F [Deinococcus radiodurans R1] gi|6459262|gb|AAF11067.1|AE001994_3 NADH dehydrogenase I, F subunit [Deinococcus radiodurans R1] Length = 444 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 192/416 (46%), Positives = 251/416 (60%), Gaps = 11/416 (2%) Query: 6 DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 R LY G +L G + V + G D +I EVK SGLRGRGGAGF+ Sbjct: 16 HRFAPTLYAQVGQPRSWTLDTYQRGGGYQGVRRAFALGPDAVIEEVKKSGLRGRGGAGFA 75 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP +PH ++ NADESEPGT KDR +M +PH LIEG +I +A+ A Sbjct: 76 TGLKWSFMPLND-GKPHLIICNADESEPGTFKDRYLMSEDPHQLIEGMLIGGYAMRASRG 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ E L AA+ E A+GLLG + G+D D+ VH GAGAYICGEETAL+ Sbjct: 135 YIYIRGEYVLAAERLWAAIHEARAAGLLGKDILGSGFDFDLQVHRGAGAYICGEETALMN 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PRLKPPFPA GLYG PTT+NNVE+ IL+ GA W++G G E ++G K Sbjct: 195 SLEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATHILKYGADWHAGMGTEKSKGMK 254 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMR 299 LF ISG V P E + F ELI GG +++ A+IPGG S L + Sbjct: 255 LFQISGPVARPGVYELPLGTPFRELIYDWAGGPT---EDIKAIIPGGISCQLLKWSEDIL 311 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358 MDY+ L GS LGT V ++ + I+ W FY HESCG+CTPCREG +GWM Sbjct: 312 DTPMDYESLAAAGSSLGTGGVTLIPAAASIVDTTWNAVRFYGHESCGKCTPCREGISGWM 371 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +R+ E+L +G Q + +L+ +++ NI GR+ CAL DA P+ I+ FR + Sbjct: 372 VRMYEKLARGHGQPGDTNLILDMADNIGGRSFCALADACLGPVLSSIRLFREEYDA 427 >gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469] gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469] Length = 626 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 150/425 (35%), Positives = 232/425 (54%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 + Q RI N +S + ++ G + K L E D +++ V SGLRGRGG Sbjct: 139 FIAKQTRIVLENCGKFDAESFDEYLAGGGFSAFQKALFEMTPDEVVDVVDKSGLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + + ++ Y+V N DE +PG D +M +P+ LIEG +IA +A+G+ Sbjct: 199 GFPTGRKWKQVARQA-EKERYVVCNGDEGDPGAFMDGSVMEGDPYKLIEGMMIAGYAVGS 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ E A +LG N + + ++ GAGA++CGE +A Sbjct: 258 ENGYIYVRAEYPMSVARLKHAIAELEARHMLGDNILGTDFSFHMHINRGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ A VP I+ GA WY G E Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLWAKPTVLNNVETYANVPKIVLEGADWYRSIGTEGTP 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK FS++G + +E M T ++I GG++ G AV GG S CL Q Sbjct: 378 GTKTFSLTGSIQNTGLIEVPMGTTLRQIIFDIGGGMKDGG-TFKAVQIGGPSGGCLT-EQ 435 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D++ +K+ G+ +G+ ++VMD T +++ F + ESCG+C PCREGT Sbjct: 436 HLDVPLDFESIKKYGAIVGSGGLVVMDDHTCMVEVARFFMSFTQRESCGKCVPCREGTKR 495 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++E++V G + ++D L E++ ++ +C LG +A P+ ++ FR EE I Sbjct: 496 MLEILEKIVAGKGELEDLDRLEELAGMVKDMALCGLGKSAPLPVLSTLRTFRKEYEEHIV 555 Query: 418 QYHRC 422 +C Sbjct: 556 D-KKC 559 >gi|299138537|ref|ZP_07031716.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp. MP5ACTX8] gi|298599783|gb|EFI55942.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp. MP5ACTX8] Length = 444 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 203/415 (48%), Positives = 269/415 (64%), Gaps = 5/415 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+ ++ + +G+ + + + V K +E+G +WI+NE+KASGLRGRGGAGF TG Sbjct: 9 DEVKVVSRRFGMGAAEIDKYVELDGYKAVQKAIEQGPEWIVNEMKASGLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PKV S++P Y++VN DESEPGTCKD I H+PH +IEG +IA AIGA FI Sbjct: 69 MKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAIIEGTMIAGLAIGAKMGFI 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGE+ + ++ AV + YA G LG N K G D DII GAGAY GEE+AL+ES Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGFLGKNIFGKEGVDFDIITQTGAGAYEVGEESALMES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G PR+KPPFPA VGLYG PT +NN E+IA P IL G Y+ G E N GT+L Sbjct: 188 LEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIANAPHILLMGGEAYAKLGSERNGGTRL 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ISGHV P E M + + I + GGI+ G L AV+PGGSS P L A ++ Sbjct: 248 FGISGHVERPGVYELPMGYSLRKAIYEVAGGIK-GGKQLKAVVPGGSSCPVLKADEI-DV 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D + + G+ LG+ ++V+D S I++ R FY+HESCG C PCREGT W+ + Sbjct: 306 GLDFDQMGKAGTMLGSGGIVVLDESVSIVEFALRTIRFYQHESCGWCIPCREGTDWLKKT 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + R G K++ID + +++N+ GRT C LGDAAA P G IK FR EE + Sbjct: 366 LTRFHAGGGNKKDIDNIQYLAENMLGRTFCPLGDAAAMPTIGFIKKFRSEFEEYL 420 >gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 617 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 148/418 (35%), Positives = 241/418 (57%), Gaps = 6/418 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + L + +SL D ++ G + + KIL + + +I++V+ SGLRGRGG GF TG KW Sbjct: 139 VLRKLDAIDPESLDDYLALGGYRTLRKILFQMTPERVIDQVEKSGLRGRGGGGFLTGRKW 198 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 +V + +++ N DE +PG DR +M +PH +IEG ++ ++AIGA +IYVR Sbjct: 199 RLCRQVPGE-VKFIICNGDEGDPGAFMDRAVMEGDPHAVIEGLIVGAYAIGALKGYIYVR 257 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ + L AV++ G LG+N + + DI + GAGA++CGEETAL+ S+EG+ Sbjct: 258 HEYPLAVKRLTRAVEQARDFGFLGTNILRSKFSFDIKISQGAGAFVCGEETALIASIEGR 317 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+P +PP+P GL+G PT +NNVE++A +P I+ GA ++ G E ++GTK+FS+ Sbjct: 318 IGEPMPRPPYPIQAGLFGLPTVINNVETLANIPEIINLGAEHFAALGTEKSKGTKVFSLV 377 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN +E M + ++ GGI G + AV GG S C+P Q +DY Sbjct: 378 GAVNNTGLLEVPMGTSLRHIVYDLGGGIPGNHE-FKAVQTGGPSGGCIPK-QFLDLPVDY 435 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L+++GS +G+ +IVMD + ++ F ESCG+CTPCREG + ++ + Sbjct: 436 DSLQQVGSIMGSGGMIVMDTKSCMVDVARYFISFLMQESCGKCTPCREGLKQLHAILTDI 495 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 G +++ + ++ ++ + + ++C LG +AA P+ +K FR + I +C Sbjct: 496 TSGRGEEKHLAMMEDLCRTMASASLCGLGQSAANPVLSTLKYFREEYTKHIVD-KKCP 552 >gi|37787352|gb|AAP50520.1| Hox1F [Thiocapsa roseopersicina] Length = 536 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 157/421 (37%), Positives = 247/421 (58%), Gaps = 6/421 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q +I N + S ++ G + + + L E ++ EV SGLRGRGG Sbjct: 118 FFARQQKIVLENAGIIDPDSFKGYVAVGGYSALIRALSEMTPADVLREVTDSGLRGRGGG 177 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KWS + K+ + Y++ NADE +PG DR I+ +PH ++EG IA++AIGA Sbjct: 178 GYPTGLKWSTVAKMPA-TQKYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAAYAIGA 236 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETA 177 + A++YVR E+ E LQ A+ + SGLLG+ + +++ + GAGA++CGEETA Sbjct: 237 NKAYVYVRAEYPLAVERLQTAIRKAKRSGLLGNKIGDTQFSLEVEIRLGAGAFVCGEETA 296 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +GQPR +PP+PA GL+G PT +NNVE+ A + I+R G W++ G E ++ Sbjct: 297 LMASIEGLRGQPRPRPPYPAEAGLWGYPTLINNVETFANIAPIVREGGDWFASIGTERSK 356 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M + ++IE GGI GG AV GG S C+PA Sbjct: 357 GTKVFALAGTITNTGLIEVPMGTSLRDIIEVIGGGIPGG-KAFKAVQTGGPSGGCIPAQH 415 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD LK +G+ +G+ +IVMD ++ ++ F ESCG+C PCR GT Sbjct: 416 L-DIAVDYDSLKTLGTMMGSGGMIVMDETSSMVDVARYFMEFCMTESCGKCIPCRTGTQQ 474 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +++RL K A + E+ LL E+ + ++ ++C LG A P+ ++ FR E ++ Sbjct: 475 MHSILDRLAKSQATRAELTLLEELCEVVQATSLCGLGQTAPNPVLSTMRYFRDEYEAKLG 534 Query: 418 Q 418 + Sbjct: 535 E 535 >gi|303238581|ref|ZP_07325115.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302593979|gb|EFL63693.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 574 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 146/421 (34%), Positives = 230/421 (54%), Gaps = 6/421 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N + + + ++++ G ++ + L + RD +I VK SGLRGRGG Sbjct: 137 FYKKQVRVALRNCGVINPEDIHEAIAVGAYEAMGMALTKMSRDEVIEVVKKSGLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K +++ NADE +PG DR I+ +PH++IE I ++AIGA Sbjct: 197 GFPTGLKWEITKKQE-GAVKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L A+ + G+LG N + D+ + +GAGA++CGEETA Sbjct: 256 DTGIVYIRAEYPLAVARLNIAIKQARELGVLGKNIFGTDFSFDVTLKYGAGAFVCGEETA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S EGK+G+P KPP+PA G +G PT VNNVE+ A +P I+ RGA W++ G E ++ Sbjct: 316 LINSCEGKRGEPDYKPPYPAEEGYWGHPTCVNNVETFANIPVIITRGAEWFASMGSEKSK 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N VE M IT E+I GGI G AV GG S L + Sbjct: 376 GTKVFALAGKINNVGLVEVPMGITLREIIYDIGGGI-SGGKRFKAVQTGGPSGGVLTEKE 434 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L +GS +G+ +IVMD +++ F E+CG+C P R GT Sbjct: 435 L-DTPIDYDSLLAVGSMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKR 493 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ + +G A ++D + +++ I+ ++C L A P+ +K+F + Sbjct: 494 LFEMLHNITQGKATMADLDAMKQLAYLIKDSSLCGLCQTAPNPVISTMKHFWNEYLAFVK 553 Query: 418 Q 418 Sbjct: 554 D 554 >gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 626 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 152/418 (36%), Positives = 238/418 (56%), Gaps = 6/418 (1%) Query: 3 TDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60 +Q+ I ++ + S+ D M+RG + ++ K+L + D II +K +GLRGRGG GF Sbjct: 143 KNQNFYIMEDIGKCECDSIEDYMARGGYSSLIKVLSQMQADEIIEMIKNAGLRGRGGGGF 202 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW SD ++V N DE +PG +R ++ +PH ++EG +IA + IGA Sbjct: 203 PTGLKWEAAKNSKSD-VKFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYTIGAQK 261 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+ Y+R E+ + Q A+D+ GLLG N + G+ D+ + GAGA++CGEETALL Sbjct: 262 AYAYIRAEYPIAIQMFQKAIDDAKKLGLLGENILQTGFSFDVEIKEGAGAFVCGEETALL 321 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EGK+G PR +PPFPA GL+G PT +NNVE+ A + I+R G Y G EN+ GT Sbjct: 322 ASIEGKRGMPRPRPPFPAQSGLWGYPTLINNVETYANISRIIRDGVEKYRLLGTENSPGT 381 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+FS++G + +E T ++I + CGG+ + AV GG S CL + Sbjct: 382 KMFSVTGPLKVTGIIEVEFGTTLRKIIYEICGGL-LSGEEFKAVQIGGPSGACLSKEFL- 439 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD LK + +G+ ++V+ + T +++ F K ESCG+C PCREGT Sbjct: 440 DMPLDYDTLKSADAMVGSGGIVVITKRTCMVEVARFFLDFTKRESCGKCIPCREGTMQAY 499 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E+ + A K +++ L ++ I+ ++C LG A PI +K F+ ++ Sbjct: 500 NILEKFTQAKATKEDLENLEFLANLIKKTSLCGLGKTAPNPILSTLKLFKDEYLAHLN 557 >gi|88812971|ref|ZP_01128214.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231] gi|88789749|gb|EAR20873.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231] Length = 427 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 208/416 (50%), Positives = 271/416 (65%), Gaps = 7/416 (1%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 F L + +L + G + + K+ E+ + +I E+K S LRGRGGAGF TG+KW Sbjct: 7 FATLRFDRPWTLDNYRKVGGYQALQKLFEQKVKPEEVIEEIKRSALRGRGGAGFPTGIKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP+ Y+V N+DESEPGTCKDRDI+R+ PH LIEG VIA +A+G + Y+R Sbjct: 67 SFMPRNAPG-QKYIVCNSDESEPGTCKDRDILRYNPHALIEGMVIAGYAMGVSVGYNYLR 125 Query: 127 GEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GEF+RE + ++ A+DE A+G +G N G+ + +GAGAYICGEE+ LLESLEG Sbjct: 126 GEFMREPFQRMEQALDEARAAGYIGENIQGRGFGFQLHNVYGAGAYICGEESGLLESLEG 185 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKG PR KPPFPA GLYG PTTVNN E+ A VP+I+R GA W+ GR NN G K FS+ Sbjct: 186 KKGMPRYKPPFPAQFGLYGRPTTVNNTETFASVPSIIRNGAEWFLELGRPNNGGVKCFSV 245 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SGHV P E + F EL++ G L AVIPGGSS+P +P QM MD Sbjct: 246 SGHVVKPGNYEVPLGTPFRELLKMAGG--VRDEHKLKAVIPGGSSMPMVPGDQMLELDMD 303 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD L + GSGLG+ V+VMD +TD+IK I R+S FY ESCGQCTPCREG GWM RV++R Sbjct: 304 YDSLVKAGSGLGSGGVVVMDETTDMIKVILRISRFYYAESCGQCTPCREGCGWMYRVIKR 363 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + +G + +++LL + I G TICA G+AAAWP+Q ++K++R I+ Sbjct: 364 IYEGKGRMADLELLESAAGQIAGHTICAFGEAAAWPVQSVLKHWRNEFVHYIEHKR 419 >gi|330465207|ref|YP_004402950.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris AB-18-032] gi|328808178|gb|AEB42350.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris AB-18-032] Length = 438 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 186/403 (46%), Positives = 245/403 (60%), Gaps = 5/403 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + + K L+ D +I VK SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWQIGTYEKLDGYAALRKALKAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M H+PH+L+EG +IAS+AI A+ A+IY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ AV+E A G LG N G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRNAVEEAKAKGYLGKNILGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG + P Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKSMGTEKSAGPMIYSLSGRIANPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT ELIE G NL PGGSS P L A + +D++G+ GS Sbjct: 263 ECGLGITLRELIELAGGM--QPGHNLRFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G + Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHDD 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +D L + NI GR+ C LGD A + +K F+ + I+ Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422 >gi|325003719|ref|ZP_08124831.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia sp. P1] Length = 454 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 197/410 (48%), Positives = 257/410 (62%), Gaps = 10/410 (2%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---- 72 S+ + ++ D +I +K SGLRGRGGAGF TGMKW F+P+ Sbjct: 20 SWSIDTYEQLDGYTSLRTAFAAHPDQLIQLIKDSGLRGRGGAGFPTGMKWGFIPQDDGSG 79 Query: 73 --CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 +P YLV+NADE EPGTCKD M +PH+LIEGC++ S+AI A+ IYVRGE + Sbjct: 80 KGPGAKPKYLVINADEGEPGTCKDIPTMMADPHSLIEGCIVTSYAIRANFCAIYVRGEAL 139 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 L+AAV E A G LG++ G+D++I+VH GAGAYICGEETALL+SLEG++GQP Sbjct: 140 HCIRRLRAAVREAKARGYLGTDILGSGFDLEIVVHAGAGAYICGEETALLDSLEGRRGQP 199 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RLKPPFPA GLY CPT VNNVE+IA VP I+ G+ W+ GRE + G K++SISGHV Sbjct: 200 RLKPPFPATAGLYACPTVVNNVETIASVPAIVNGGSDWFRSMGREKSPGPKIYSISGHVE 259 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + IT EL+E G G L PGGSS P L A + +D++G Sbjct: 260 RPGQYEAPLGITLRELLELAGGMKDGVP--LKFWTPGGSSTPLLTADHL-DVPLDFEGAA 316 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 E GS LGT AV V + + + A+ + + FYKHESCG+CTPCREGT W+++V+ER+V G Sbjct: 317 EAGSMLGTTAVQVFNETVSVPWAVMKWTEFYKHESCGKCTPCREGTYWLVQVLERMVHGQ 376 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++D++ +V NI GR+ CALGD A PI I FR + I + Sbjct: 377 GTSADVDMMLDVCDNILGRSFCALGDGATSPITSGITYFRQEFLDLIAEQ 426 >gi|227494508|ref|ZP_03924824.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832242|gb|EEH64625.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 444 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 199/424 (46%), Positives = 249/424 (58%), Gaps = 15/424 (3%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 D DR +L +RG + ++K L I + VKASGLRGRGGAGF T Sbjct: 20 WDHDR---------SWTLDSYRARGGYRGLEKALTLEPTQITDMVKASGLRGRGGAGFPT 70 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSF+P +P YLVVNADESEPGTCKD ++ PH LIEG I + AI AF Sbjct: 71 GLKWSFLP-PDDGKPRYLVVNADESEPGTCKDIPLLMANPHALIEGMAITARAIRCEHAF 129 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV--HHGAGAYICGEETALLE 180 IY+RGE L AAV E +GL+G D ++ + H GAGAYICGEETALL+ Sbjct: 130 IYLRGEVAHVYRRLLAAVREAEEAGLIGQGLGPNGDFNLRITAHAGAGAYICGEETALLD 189 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G PRLKPPFPA GLY PT VNNVESI+ VP I W++ G E + G Sbjct: 190 SLEGRRGHPRLKPPFPAVAGLYARPTVVNNVESISQVPGIFANPEGWFAAMGTEKSTGHG 249 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 FS+SGHVN P E IT ELIE G L PGGSS P ++ Sbjct: 250 FFSVSGHVNNPGQFEAPFGITMRELIEMAGG--IRDGHQLKFWTPGGSSTPIFTEAEL-D 306 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ + GS L T A+ V D +T +++ I R + FY+HESCG+CTPCREGT WM + Sbjct: 307 VPLDYESVGAAGSMLATRALQVFDETTSVVRVITRWTEFYQHESCGKCTPCREGTYWMKQ 366 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +M RL G + +IDLL E++ NI G++ CALGDAAA P++ I FR E + Sbjct: 367 IMLRLEAGRGKPGDIDLLDEIAGNIAGKSFCALGDAAATPVRSGIAKFREEFEAGLTTPA 426 Query: 421 RCNF 424 R F Sbjct: 427 RELF 430 >gi|118579072|ref|YP_900322.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118580051|ref|YP_901301.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118581589|ref|YP_902839.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118501782|gb|ABK98264.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] gi|118502761|gb|ABK99243.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] gi|118504299|gb|ABL00782.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] Length = 427 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 187/421 (44%), Positives = 243/421 (57%), Gaps = 6/421 (1%) Query: 6 DRIFTNL-YGLQGKSLSDSMSRGHWDNVDKILEKGRDWIIN-EVKASGLRGRGGAGFSTG 63 +RIF N +L RG + ++ L+ + + EV ASGLRGRGGAGF TG Sbjct: 4 ERIFFNFPVTADSHTLKAYQGRGGYQALENALKTLQPIDVEKEVMASGLRGRGGAGFPTG 63 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KWSF+ K YL NADE EPGT KDR I H H LIEG ++A++A+ AFI Sbjct: 64 SKWSFVNKKAPVV--YLCCNADEGEPGTFKDRWIFEHNSHQLIEGMILAAYALNVRNAFI 121 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGEF L A+ E Y +G LG N + DI V G GAY+CGEE++L S+ Sbjct: 122 YIRGEFDLSFRRLMDAMSEAYKAGYLGENILGSSFSCDIRVMQGGGAYVCGEESSLYTSI 181 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG KG PR KPPFPA GLY PT VNNVE++A VP I+ GA +S G E + GTK+F Sbjct: 182 EGFKGYPRNKPPFPAVQGLYKAPTVVNNVETLANVPWIMTNGAKAFSAMGTEKHPGTKIF 241 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SGHV P E + +LI + CGGI L AVIPGGSS P L + A Sbjct: 242 GVSGHVKKPGLYELPLGYPLKKLIFEECGGI-LNGKELKAVIPGGSSTPILLPQDVETAN 300 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +D + L + LG+ VIV+ +++ + LS FY HESCGQCTPCREG+ WM ++ Sbjct: 301 LDAECLSTYRTMLGSGGVIVIAEGVCMVRLLHTLSRFYAHESCGQCTPCREGSAWMNDII 360 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 R+V G K +++ L ++K I G T+CALGDAA+ P+ I FR + I+ Sbjct: 361 SRIVAGKGVKGDLESLERITKGIMGNTVCALGDAASMPVINFITKFRAEFDYYIEHGRSM 420 Query: 423 N 423 N Sbjct: 421 N 421 >gi|219847961|ref|YP_002462394.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aggregans DSM 9485] gi|219542220|gb|ACL23958.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aggregans DSM 9485] Length = 434 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 195/419 (46%), Positives = 261/419 (62%), Gaps = 9/419 (2%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + I L + G W+ L EK I+ VK SGLRGRGGAGF TG Sbjct: 5 EHIIMRELDIPDISDFAVYRRHGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTG 64 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 MKWSF+PK P YL+ N DESEPGT + I+ PH LIEG +++FAI A+ A+I Sbjct: 65 MKWSFLPK--GVYPRYLLCNCDESEPGTFNNHQIIDKNPHQLIEGVALSAFAIEANTAYI 122 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGEF +L+ A+ + Y +G LG N G+D+DI VH GAGAYICGEETAL+ESL Sbjct: 123 YMRGEFAAAARTLERAIAQAYEAGFLGKNILSTGFDLDIYVHRGAGAYICGEETALMESL 182 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK GQPRLKPPFPA GLYG PT +NNVE++A VP I+ +G +WY G E + GTK F Sbjct: 183 EGKIGQPRLKPPFPAVAGLYGKPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCF 242 Query: 243 SISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 S+SGHVN P E + ELIE ++ GG++GG + +IPGG+S P L A + Sbjct: 243 SLSGHVNRPGNYELPFGVPLRELIESPEYGGGMKGGRP-VKIIIPGGASAPWLTADHL-D 300 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ L GS LG+ AVIV++ + +++ F+KHESCG+CTPCREGT W++R Sbjct: 301 VPLDYESLAAAGSMLGSGAVIVLNDTVSAPHLAYKMDEFFKHESCGKCTPCREGTHWLVR 360 Query: 361 VMERLV-KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 V+ R+V +G A +ID L+ + + + G C LG++A PI+ ++ F E + Q Sbjct: 361 VLHRMVEEGHATAADIDTLHGIYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKQ 419 >gi|146341846|ref|YP_001206894.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp. ORS278] gi|146194652|emb|CAL78677.1| Putative formate dehydrogenase beta subunit [Bradyrhizobium sp. ORS278] Length = 518 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + SL D + G + + + L D +I EV SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGIIDPLSLEDYRAHGGYKGLTRALTLSPDAVIAEVTTSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + +D Y++ NADE + GT DR +M +P LIEG I A+GA Sbjct: 158 PTGIKWKTVSQTAAD-RKYVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY R E+ ++ A+D +GLLG Y ++ V GAGAY+CGEETAL+ Sbjct: 217 GYIYTRSEYPHAIATMTKAIDIAKKAGLLGDKISGSNYTFELEVRTGAGAYVCGEETALM 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT VNN+ S A +P IL GA Y+ FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPLPAHHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V + E + IT EL++ GG + AV GG P + Sbjct: 337 MPIQIAGNVKFGGLFETAFGITLGELVDDIGGGT-FTGRPVRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 395 DTPFDYEAFAAKEGLIGHGGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGA 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ +G I L+ ++ ++ ++CALG +P+ +K+FR Sbjct: 455 ETIDKIRRGERVAENIALVEDLCGTMKLGSLCALGGFTPYPVLSALKHFREDF 507 >gi|152996297|ref|YP_001341132.1| NADH dehydrogenase [Marinomonas sp. MWYL1] gi|150837221|gb|ABR71197.1| NADH dehydrogenase (quinone) [Marinomonas sp. MWYL1] Length = 522 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 162/413 (39%), Positives = 229/413 (55%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SLSD ++ + K L ++++VK SGLRGRGGA F Sbjct: 100 LKHQQRLTFARIGEIDPLSLSDYQKLNGFNGLKKALTMDSQALVDQVKESGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S+ Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 160 PTGIKWQTVLNAPSE-QKYIVCNADEGDSGTFADRLVMECDPFMLIEGMIIAGLAVGATQ 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++L A+ Y + LLG + G D+ V GAGAYICGEET+LL Sbjct: 219 GYIYLRSEYPLAYKTLNQAIGLAYGNNLLGRDIQGSGKHFDLEVRLGAGAYICGEETSLL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA VGL+G PT VNNV S+A VP IL +GA Y+ G +RGT Sbjct: 279 ESLEGKRGLVRAKPPLPAIVGLFGQPTVVNNVLSLAAVPFILDQGAKAYADCGMGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + EL+ GG R G L AV GG LP Q Sbjct: 339 LPFQLAGNVKRGGLVELAFGPKLSELMFDFGGGTRNGRP-LRAVQVGGPLGAYLPESQ-W 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + G+ LG V++ D + D+ + F ESCG+CTPCR G+ + Sbjct: 397 DTQLDYEEFAKEGAVLGHGGVVMFDDTVDMSEQARFSMEFCVAESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ G I+LL ++ + + ++CA+G +P+Q +K+FR Sbjct: 457 EVIDRIRAGENVNSNIELLEDLCETMVDGSLCAMGGMTPFPVQSAMKHFRDDF 509 >gi|320107665|ref|YP_004183255.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4] gi|319926186|gb|ADV83261.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4] Length = 440 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 196/416 (47%), Positives = 265/416 (63%), Gaps = 5/416 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 D+ +I + +G + + + V + G +W+I E+KASGLRGRGGAGF TG Sbjct: 9 DEVKILSRRFGQGAAEIEKYVEMDGYKAVQNAITNGPEWVITEMKASGLRGRGGAGFPTG 68 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+PKV S++P Y++VN DESEPGTCKD I H+PH +IEG +IA AIGA FI Sbjct: 69 LKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAVIEGTMIAGLAIGAKMGFI 127 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181 Y+RGE+ + ++ AV + YA G LG N G D DI+ GAGAY GEE+AL+ES Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGYLGKNIFGHEGVDFDIVTQTGAGAYEVGEESALMES 187 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 LEGK+G PR+KPPFPA VGLYG PT +NN E+IA P IL G Y+ G E N GT+L Sbjct: 188 LEGKRGIPRIKPPFPAIVGLYGGPTVINNAETIASAPPILLMGGEAYAKVGSERNGGTRL 247 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ISGHVN P E M + + I + GGI+ G L AV+PGGSS P L ++ Sbjct: 248 FGISGHVNKPGVYELPMGYSLRKAIYEVAGGIK-GGRALKAVVPGGSSCPVLLPEEI-DV 305 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+D + + G+ LG+ ++V+D + I++ R FY+HESCG C PCREGT W+++ Sbjct: 306 GLDFDQMGKAGTMLGSGGIVVLDETVSIVEFAMRTMKFYQHESCGWCIPCREGTDWLLKT 365 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + R G K++I+ + +++N+ GRT C LGDAAA P G IK FR EE ++ Sbjct: 366 LTRFYDGGGNKKDINNIQYLAENMMGRTFCPLGDAAAMPTLGFIKKFRHEFEEYLE 421 >gi|94676644|ref|YP_588821.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219794|gb|ABF13953.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 444 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 172/415 (41%), Positives = 241/415 (58%), Gaps = 6/415 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L++ D II+ +K SGL+GRGGAGF TG+KWS + S Sbjct: 20 HQPVWLDEYKSKNGYVGAHKALKQTPDEIISLIKNSGLKGRGGAGFYTGIKWSLISVNAS 79 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + YL+ NADE EPGT KDR +M PH LIEG +IA+FAI A+ ++I++RGE++ Sbjct: 80 ENIRYLLCNADEMEPGTYKDRLLMEQLPHLLIEGILIAAFAIRANRSYIFLRGEYVNAAA 139 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +LQ A+ E +GLLG N +D+++ +H GAG YICGEETALL SLEG++ PR KP Sbjct: 140 NLQRAIIEANKAGLLGKNILGSEFDLELFLHTGAGRYICGEETALLNSLEGRRAIPRSKP 199 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA +G++G PT VNNVE++ VP IL G WY G N+ GTKL SG V P Sbjct: 200 PFPATIGVWGKPTCVNNVETLCNVPAILEYGLKWYKSINKGMSNDTGTKLMGFSGRVKKP 259 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GGI G L A PGG+S L + MD++ L + Sbjct: 260 GLWELPFGITAREILEDYAGGIADGM-TLKAWQPGGASTGFLTPDYL-DIPMDFEHLIQA 317 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA I +D +++ + F+ ESCG CTPCR+G W ++++ L Q Sbjct: 318 GSRLGTALAIAVDDKINMVSLTRNIEEFFARESCGWCTPCRDGLPWSVKLLRALEDKQGQ 377 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +I++L ++ + G+T CA A P++ +K FR E I + N + Sbjct: 378 PEDINILEQLCTLLAPGKTFCAHAPGAIEPLKSALKYFRGEFEAGISDENLSNVR 432 >gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 628 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 151/429 (35%), Positives = 238/429 (55%), Gaps = 10/429 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ + + +S+++ ++ G + V K L + + I++E+ S LRGRGG Sbjct: 139 FYKQQTRVALEHCGHINAESINEYIAMGGYQAVAKALFDMTSESIVDEISDSYLRGRGGG 198 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW+ + + + Y+V N DE +PG DR +M +PH +IEG +IA A A Sbjct: 199 GFPTGKKWAQVLRQTEE-TKYVVCNGDEGDPGAFMDRSMMEGDPHRMIEGMIIAGIATKA 257 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IYVR E+ L+ A+++ + GLLG N G+ + + GAGA++CGE +A Sbjct: 258 HYGYIYVRAEYPLAVHRLETAIEQARSLGLLGCNILGSGFSFALKISQGAGAFVCGEGSA 317 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ VP+I+ +GA WY +G E N Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIILKGADWYKTYGLEKNY 377 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL---P 294 GTK F+++G+V +E M T ++I GG++GG AV GG S CL Sbjct: 378 GTKAFALTGNVMNTGLIEVPMGTTLRKVIYDIGGGVKGGE--FKAVQIGGPSGGCLVLNA 435 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 +D+D LK++G+ +G+ ++VM+ + +++ F ++ESCG+C PCREG Sbjct: 436 ENDHLDMPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCVPCREG 495 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 T M+ ++ +V+G +DLL E+++ I +C LG AA P+ IK FR Sbjct: 496 TKRMLELLTDIVEGRGTLEHLDLLEELAETISATALCGLGKTAASPVVSTIKYFRDEYIA 555 Query: 415 RIDQYHRCN 423 + +C Sbjct: 556 HVVD-KKCP 563 >gi|53804527|ref|YP_113816.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str. Bath] gi|53758288|gb|AAU92579.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str. Bath] Length = 427 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 175/418 (41%), Positives = 247/418 (59%), Gaps = 8/418 (1%) Query: 6 DRIFTNLYGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFST 62 D+ T G + L++ ++ G ++ + K L + + + VK SGLRGRGGAGF T Sbjct: 2 DKPLTRNIKSDGSTVTLAEYLASGGYEGLKKTLAEFAPLDVQQRVKDSGLRGRGGAGFPT 61 Query: 63 GMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KWSF+P R YLVVN DE EPG KDR ++ +PH LIEG VIA++AI A+ A Sbjct: 62 GLKWSFVPMGEGAPRTKYLVVNGDEMEPGAFKDRLLLEGDPHQLIEGVVIAAYAIQANIA 121 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++++RGE+ L+ A+ E A GLLG + G+ +D+ +H AG YICGEETALL Sbjct: 122 YVFLRGEYRLAAARLRQAIAEAEAQGLLGEDILGSGFSLDLRLHTSAGRYICGEETALLN 181 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+ PR KPPFP GL+G PT VNNVE++ +P ILR G WY G R GTK Sbjct: 182 SLEGKRANPRAKPPFPQVSGLFGKPTIVNNVETLCNLPHILRNGVEWYKGLSRTGEPGTK 241 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++ +SG V P E M T E+IE+H GG+R G+ L +PGG+S L + Sbjct: 242 IYGVSGRVRSPGAWELPMGTTAREIIEEHAGGMRDGY-RLKGYLPGGASTDFLLPEHL-D 299 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDY + + GS LGT +I++D T ++ + L F+ ESCG CTPCR+G W + Sbjct: 300 IPMDYGSIGKAGSRLGTGTMILLDDKTCPVQMVLNLERFFAQESCGWCTPCRDGLPWTVS 359 Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++E L++G + +++ L + + G T CAL A P+Q +K+FR E + Sbjct: 360 LLEGLIEGRGRPEDLETLERLCGLLGPGNTFCALAPGAMEPLQSALKHFRADFERYLQ 417 >gi|163751850|ref|ZP_02159065.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99] gi|161328266|gb|EDP99428.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99] Length = 458 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 164/418 (39%), Positives = 242/418 (57%), Gaps = 11/418 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCS 74 LS+ +S G +D + + +E D +++ +K S LRGRGGAGF TG+KWSF+P+ + Sbjct: 17 NCWQLSEYLSHGGYDGLTRAMEMSADELLDSIKQSNLRGRGGAGFPTGLKWSFVPRGADA 76 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 R YL+VNADE EPG KDR ++ PH +IEG +I +GA +I++RG++ E Sbjct: 77 PREKYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEE 136 Query: 135 SLQAAVDECYASGLLGSNS------KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 LQ A++EC LLG + ++ +I +H AG YICGEETAL+ ++EGK+ Sbjct: 137 RLQQAIEECKQHQLLGRDILGRGIQGQAFNFEIHLHSSAGRYICGEETALINAMEGKRAT 196 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFP VGL+G PT VNNVE+ +P I+ G+ W+ G+ + GTK+F +SG V Sbjct: 197 PRAKPPFPQVVGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRV 256 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E M + E+IE H GG+ G+ L +PGG S L + A+MDYD + Sbjct: 257 KRPGLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DALMDYDEI 314 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 ++GS +GT +I++D + + L F+ ESCG CTPCR+G W + ++E++ +G Sbjct: 315 SKLGSRMGTGTIIILDDKYCPVSMVLNLVRFFAQESCGWCTPCRDGLPWAVSLLEKIERG 374 Query: 369 IAQKREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++ID L ++ G T CAL A P+Q +K FR E I C + Sbjct: 375 EGEPKDIDQLEDLCDFAAPGNTFCALAPGAVEPLQSALKYFRQDFETHIKHQC-CPYH 431 >gi|315605125|ref|ZP_07880176.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 180 str. F0310] gi|315313161|gb|EFU61227.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 180 str. F0310] Length = 434 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 198/418 (47%), Positives = 250/418 (59%), Gaps = 12/418 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I TN +G + +L +RG + ++K I+ VK SGLRGRGGAGF +G+KW Sbjct: 14 IITNGWGEERSWTLDSYRARGGYLGLEKARAMDPADIVAAVKDSGLRGRGGAGFPSGLKW 73 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+R Sbjct: 74 SFLPPADGG-PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L +AV E +G+LG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 133 GEVTHVYRRLLSAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT VNNVE+IA V I R W++ G E ++G +FS+SG Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPQWFASMGTEKSKGHGIFSVSG 245 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E IT ELI+ G L PGGSS P ++ +DY+ Sbjct: 246 HVANPGQFEAPFGITMRELIDMAGG--IRQGHTLKFWTPGGSSTPIFTQDEL-DTPLDYE 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS LGT A+ V D + +++ I R S FY+HESCG+CTPCREGT WM ++M RL Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +G + ++DLL E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420 >gi|326919902|ref|XP_003206216.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like, partial [Meleagris gallopavo] Length = 374 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 246/370 (66%), Positives = 293/370 (79%), Gaps = 1/370 (0%) Query: 57 GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 GAGF TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A A+ Sbjct: 1 GAGFPTGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAM 60 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175 GA A+IY+RGEF E +LQ A+ E Y +GLLG N+ Y D+ V GAGAYICGEE Sbjct: 61 GARAAYIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEE 120 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE Sbjct: 121 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRER 180 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+RGGWDNLLAVIPGGSS P LP Sbjct: 181 NSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPK 240 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +MD+D L + SGLGTAAVIVMD+STDI+KAI RL FYKHESCGQCTPCREG Sbjct: 241 SVCETVLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGV 300 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 WM +VM R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R Sbjct: 301 DWMNKVMARFVRGDAQTAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDR 360 Query: 416 IDQYHRCNFQ 425 + ++ Q Sbjct: 361 MRRFGEAKAQ 370 >gi|222526373|ref|YP_002570844.1| NADH-quinone oxidoreductase subunit F [Chloroflexus sp. Y-400-fl] gi|222450252|gb|ACM54518.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus sp. Y-400-fl] Length = 434 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 187/401 (46%), Positives = 255/401 (63%), Gaps = 9/401 (2%) Query: 23 SMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 G W+ L EK I+ VK SGLRGRGGAGF TG+KW F+PK P YL+ Sbjct: 23 YRRHGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLL 80 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 N DESEPGT + I+ PH LIEG ++++AI A+ A+IY+RGEF +L+ A+ Sbjct: 81 CNCDESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIA 140 Query: 142 ECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 + Y +G LG N G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA G Sbjct: 141 QAYEAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAG 200 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 LYG PT +NNVE++A VP I+ +G +WY G E + GTK FS+SGHVN P E + Sbjct: 201 LYGKPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGV 260 Query: 261 TFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 ELIE ++ GG++GG + +IPGG+S P L A + +DY+ + GS LG+ Sbjct: 261 PLRELIESPEYGGGMKGGRP-VKIIIPGGASAPWLTADHL-DVPLDYESVAAAGSMLGSG 318 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDL 377 AVIV++ + +++ F+KHESCG+CTPCREGT W++R + R+V +G A +ID Sbjct: 319 AVIVLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDT 378 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L+ + + + G C LG++A PI+ ++ F E + + Sbjct: 379 LHSIYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKR 419 >gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 593 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 147/426 (34%), Positives = 230/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 +Q ++ G + + L ++ + II ++K S LRGRGGA Sbjct: 107 FQDNQKKVVLAHCGEIDPEDLDAYLNVKGYQAARNAFNNMHPVEIIEKIKRSKLRGRGGA 166 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GFSTG KW F KV D+ Y+V N +ES+PG DR IM +PH +IEG +I + AIGA Sbjct: 167 GFSTGHKWEFAYKVD-DQEKYVVCNGNESDPGAFADRCIMEGDPHAVIEGMMICARAIGA 225 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY+R + + L+ A+ +CY GLLG N + G+D+DI ++ GA+ICGE TA Sbjct: 226 GKGYIYIRDGYSLAVKRLRLALKQCYERGLLGKNIFESGHDLDIKLYPAPGAFICGEATA 285 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L++S+EGK+ P + + G+ G PT +NN E++A VP ILR GASW++G G + + Sbjct: 286 LVQSIEGKRAMPTPRMTRTSENGIRGKPTVINNAETLANVPKILRNGASWFAGLGTDTSG 345 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++G V VE M T +++ K GGI + GG + C+P Sbjct: 346 GTKVFSLTGKVKSNGLVEVPMGATLRDVVYKVGGGI-DQDRAFKGIQLGGPTGGCVPGS- 403 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L G+ +G+ ++V+D + I+ + ESCG+CTPCR G Sbjct: 404 CLDSRVDYESLALAGTIMGSGGMVVLDETNCIVDTAKFFLDITQAESCGKCTPCRIGMRR 463 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M ++ER+ G + +++LL ++ +I ++C G A P+ ++ FR I Sbjct: 464 MYEILERITIGNGRDGDVELLEDLGSHIRATSLCGFGMTAPNPVLSTVRYFRDEYNIHIR 523 Query: 418 QYHRCN 423 +C Sbjct: 524 D-RKCP 528 >gi|295837120|ref|ZP_06824053.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74] gi|197697230|gb|EDY44163.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74] Length = 461 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 197/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%) Query: 16 QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + +L ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 36 ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 94 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +PHYLVVNADESEPGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + Sbjct: 95 GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 154 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E YA+G LG N G DV++ VH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 155 RLHEAVREAYAAGYLGENILGSGTDVELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 214 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY CPT VNNVESIA VP IL RG W+ G E + G L+S+SGHV P Sbjct: 215 PFPAVEGLYACPTVVNNVESIASVPAILNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQ 274 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 275 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 331 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 332 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 391 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L +++ NI G++ CALGD AA PI +K FR E +D C F Sbjct: 392 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 442 >gi|148254529|ref|YP_001239114.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp. BTAi1] gi|146406702|gb|ABQ35208.1| formate dehydrogenase beta subunit [Bradyrhizobium sp. BTAi1] Length = 518 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G + + + L D +I EV SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGIVDPLSLDDYRAHGGYKGLTRALTLTPDAVIAEVTTSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + +D Y++ NADE + GT DR +M +P LIEG I A+GA Sbjct: 158 PTGIKWKTVSQTAAD-RKYVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY R E+ ++ A++ +GLLG Y D+ V GAGAY+CGEETAL+ Sbjct: 217 GYIYTRSEYPHAIATMAKAIEIAKKAGLLGDKIAGSNYTFDLEVRTGAGAYVCGEETALM 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT VNN+ S A +P IL GA Y+ FG +RGT Sbjct: 277 ESLEGKRGVVRAKPPLPAHHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V + E + IT EL++ GG + AV GG P + Sbjct: 337 MPIQIAGNVKFGGLFETAFGITLGELVDDIGGGT-FTGRPVRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 395 DTPFDYEAFAAKDGLIGHGGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGA 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ +G I L+ ++ ++ ++CALG +P+ +K+FR Sbjct: 455 ETIDKIRRGERVAENIALVEDLCGTMKLGSLCALGGFTPYPVLSALKHFREDF 507 >gi|314925995|gb|EFS89826.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA3] Length = 444 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 191/399 (47%), Positives = 260/399 (65%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 L + +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + Sbjct: 18 SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVN DESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + + Sbjct: 77 PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q AV E Y++G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +L+ GG+R G + L PGGSS P L + +DY+G+ + L Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G +Q+ ++ Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGESQEGDV 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L +++ NI GR+ CAL D A ++G I +FR E Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412 >gi|229821704|ref|YP_002883230.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM 12333] gi|229567617|gb|ACQ81468.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM 12333] Length = 439 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 196/398 (49%), Positives = 248/398 (62%), Gaps = 11/398 (2%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L RG + +++ + + I++ VKASGLRGRGGAGF TG+KWSF+P Sbjct: 30 SWTLEAYRERGGYRALEEARSRKPEEIVDAVKASGLRGRGGAGFPTGLKWSFLP-PPDGG 88 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVNADESEPGTCKD +M PH LIEG I S+AIG AFIY+RGE + L Sbjct: 89 PRYLVVNADESEPGTCKDIPLMLANPHALIEGSAITSYAIGCDHAFIYLRGEVVHVYRRL 148 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AAV E A+GLLG + I VH GAGAYICGEETALL+SLEG +GQPRLKPPFP Sbjct: 149 LAAVREAEAAGLLG-------GLRITVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFP 201 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GLY PT VNNVESIA VP+I+ G W++ G E + G LFS+SGHV P E Sbjct: 202 AVAGLYARPTVVNNVESIASVPSIVLGGPEWFTSMGTEKSAGFGLFSLSGHVTRPGQYEA 261 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT EL++ G L PGGSS P L + +DY+ + GS L Sbjct: 262 PLGITLRELLDLAGG--VRDGHELKFWTPGGSSTPILTDEHL-DVPLDYESVAGAGSMLA 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +++ RL +G ++D Sbjct: 319 TRALQIFDETTSVVRAVARWTDFYAHESCGKCTPCREGTYWLKQILHRLEEGRGTAEDLD 378 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 L E++ NI GR+ CA GDAA PIQ +K FR E Sbjct: 379 TLDEITANIAGRSFCAFGDAAVTPIQSGMKYFRSEFEA 416 >gi|238062216|ref|ZP_04606925.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC 39149] gi|237884027|gb|EEP72855.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC 39149] Length = 438 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 184/403 (45%), Positives = 244/403 (60%), Gaps = 5/403 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + + K L+ D +I +K SGLRGRGGAGF TG+KW F+P+ Sbjct: 24 DAWRIGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M H+PH+L+EG +I S+AI A A+IY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIGSYAIRASRAYIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ AV E YA G LG + G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRNAVQEAYAKGYLGRDILGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNV +IA VP I+ GA W+ G E + G ++S+SG V P Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRVANPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E +M +T EL+E G NL PGGSS P L A + +D++G+ GS Sbjct: 263 ECTMGVTLRELLELAGGM--QPGHNLRFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A + + A +R FY HESCG+CTPCREG WM+RV R++ G + Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +D L + NI GR+ C LGD A + +K F+ + I+ Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422 >gi|298293800|ref|YP_003695739.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506] gi|296930311|gb|ADH91120.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506] Length = 519 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 153/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S +D + G + +++ L G II EVK SGLRGRGGAG Sbjct: 98 FLAKQTRLTFARCGIIDPASYADYRAHGGYKGLERALALGPAEIIEEVKKSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +KW + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 FPTAIKWKTVADAKAD-RKYIVCNADEGDSGTFADRMIMEGDPFELIEGMTIAGIAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ +++ A++ A G+LG N Y D+ V GAGAY+CGEETAL Sbjct: 217 KGFVYTRSEYPHAIWAMEKAIEVARAHGMLGVNIAGSQYSFDMEVRMGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L+SLEGK+G R KPP PA+ GL+ PT +NNV S+ VP IL G +Y+ FG +RG Sbjct: 277 LDSLEGKRGVVRAKPPLPAHKGLFQKPTVINNVLSLTAVPHILADGGEFYANFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + IT ELI GG G + A GG +P Sbjct: 337 TMPIQIAGNVKFGGLFETAFGITLGELINDIGGGTASGRP-VKAAQVGGPLGAYVPT-WQ 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ + +G ++V D +TD+ K F ESCG+CTPCR G+ Sbjct: 395 FDLPFDYEAFAAKDALIGHGGIVVFDETTDLAKMARFAMEFCSVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +M+R++ G + + L ++ + ++ ++CALG +P+ + +F Sbjct: 455 VELMDRIMAGQRVEANLATLTDLCQTMKLGSLCALGGFTPYPVLSALNHFPEDF 508 >gi|318057838|ref|ZP_07976561.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actG] gi|318078936|ref|ZP_07986268.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actF] Length = 463 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 196/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%) Query: 16 QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + +L ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 38 ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 96 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +PHYLVVNADESEPGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + Sbjct: 97 GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 156 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E YA+G LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 157 RLHEAVREAYAAGYLGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 216 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY CPT VNNVESIA VP IL RG W+ G E + G L+S+SGHV P Sbjct: 217 PFPAVEGLYACPTVVNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQ 276 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 277 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 333 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 334 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 393 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L +++ NI G++ CALGD AA PI +K FR E +D C F Sbjct: 394 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 444 >gi|158425077|ref|YP_001526369.1| putative NAD-dependent formate dehydrogenase beta subunit protein [Azorhizobium caulinodans ORS 571] gi|158331966|dbj|BAF89451.1| putative NAD-dependent formate dehydrogenase beta subunit protein [Azorhizobium caulinodans ORS 571] Length = 519 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 148/414 (35%), Positives = 224/414 (54%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SL + + G + + K +E G + +V SGLRGRGGAG Sbjct: 98 FLKKQTRLTFARCGIIDPLSLEEYKAHGGYKGLAKAIEIGPSATVEQVFESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 FPTGIKWRTVAAAPAD-QRYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ + ++ A+ +GLLG N + YD D+ + GAGAY+CGEETAL Sbjct: 217 KGFVYCRSEYPLSLQVMEKAIAIARTAGLLGKNVAGSQYDFDLEMRMGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L+SLEGK+G R KPP PA+ GL+G PT +NN+ S+A VP IL +G ++Y FG +RG Sbjct: 277 LDSLEGKRGVVRAKPPLPAHKGLFGKPTVINNLISLATVPVILEKGGAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ + E + I EL+ GG G + AV GG LP Q Sbjct: 337 TMPIQLAGNIKFGGIFETAFGIPLGELVYDIGGGTASGRP-VRAVQAGGPLGAYLPVHQ- 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ + +G ++V D + D+ F HESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAAKDALIGHGGIVVFDDTVDMAHMARFAMEFCSHESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++++ G ++ + +L ++ + ++ ++CALG +P+ + +F Sbjct: 455 VETLDKIIAGNRREANLAVLTDLCQTMKLGSLCALGGFTPYPVLSALTHFPEDF 508 >gi|170721053|ref|YP_001748741.1| NADH dehydrogenase subunit I F [Pseudomonas putida W619] gi|169759056|gb|ACA72372.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida W619] Length = 458 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 165/406 (40%), Positives = 233/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L E D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQAKNGYAAARKALAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L G + Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRSLENGQGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + GRT CA A P+ IK FR E + Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433 >gi|163848445|ref|YP_001636489.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aurantiacus J-10-fl] gi|163669734|gb|ABY36100.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aurantiacus J-10-fl] Length = 446 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 187/401 (46%), Positives = 255/401 (63%), Gaps = 9/401 (2%) Query: 23 SMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 G W+ L EK I+ VK SGLRGRGGAGF TG+KW F+PK P YL+ Sbjct: 35 YRRHGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLL 92 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 N DESEPGT + I+ PH LIEG ++++AI A+ A+IY+RGEF +L+ A+ Sbjct: 93 CNCDESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIA 152 Query: 142 ECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 + Y +G LG N G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA G Sbjct: 153 QAYEAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAG 212 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 LYG PT +NNVE++A VP I+ +G +WY G E + GTK FS+SGHVN P E + Sbjct: 213 LYGKPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGV 272 Query: 261 TFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 ELIE ++ GG++GG + +IPGG+S P L A + +DY+ + GS LG+ Sbjct: 273 PLRELIESPEYGGGMKGGRP-VKIIIPGGASAPWLTADHL-DVPLDYESVAAAGSMLGSG 330 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDL 377 AVIV++ + +++ F+KHESCG+CTPCREGT W++R + R+V +G A +ID Sbjct: 331 AVIVLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDT 390 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L+ + + + G C LG++A PI+ ++ F E + + Sbjct: 391 LHSIYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKR 431 >gi|71897771|ref|ZP_00679997.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] gi|71732326|gb|EAO34380.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] Length = 444 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 207/420 (49%), Positives = 265/420 (63%), Gaps = 8/420 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF T Sbjct: 18 HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + Y G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L A IPGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLHG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVHGQ 433 >gi|325971421|ref|YP_004247612.1| NADH dehydrogenase (quinone)., glutamate synthase (NADPH) [Spirochaeta sp. Buddy] gi|324026659|gb|ADY13418.1| NADH dehydrogenase (quinone)., Glutamate synthase (NADPH) [Spirochaeta sp. Buddy] Length = 1050 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 238/422 (56%), Gaps = 4/422 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 + I + + ++++ ++ G + + +K+L RD ++ EVK S LRGRGGAG Sbjct: 140 FHAQKKLILRDAGLIDPANMAEYVAVGGYRSFEKVLGGMSRDEVLLEVKNSKLRGRGGAG 199 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW M K S +P +L+ NADE +PG +R+ M +PH LIEG +IAS+A A Sbjct: 200 FPTGLKWELMAKEPS-QPKFLICNADEGDPGAYMNRNEMESDPHMLIEGLLIASYATTAQ 258 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 IYVR E+ + L+ A+++ YA GLLG N + D+ V GAGA++CGEETAL Sbjct: 259 EGIIYVRAEYPLAVQRLRTAIEQAYAVGLLGDNILERKVRFDLSVVEGAGAFVCGEETAL 318 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + SLEG+ G+ R+KPPFP+ G G PTT+NN+E+ +P I+ +G++W++ G + G Sbjct: 319 IASLEGRAGRARVKPPFPSQKGYLGRPTTINNLETWCNIPLIIGKGSAWFARIGNPASPG 378 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+FS+ G V VE + LI + GG + AV GG S C+PA + Sbjct: 379 TKVFSLVGKVKNTGLVELPLGEKLTTLIYEAGGGSVNPSKKIKAVQSGGPSGGCIPAS-L 437 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + +DY+ L +G+ +G+ ++VMD ++ + F ESCG CTPCREG Sbjct: 438 FNSTIDYESLGALGAIMGSGGMVVMDSDNCMVDSARYFLEFTTKESCGTCTPCREGLSQA 497 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ R+ +G + ++ L E+ +I +C LG +A P+ +K F E I + Sbjct: 498 LDLVSRICEGAGKLEDVKTLTELGNHISDTALCGLGQSAMNPVLTTLKYFPEEYESHIKR 557 Query: 419 YH 420 Sbjct: 558 SK 559 >gi|24372603|ref|NP_716645.1| NADH dehydrogenase I subunit F [Shewanella oneidensis MR-1] gi|24346628|gb|AAN54090.1|AE015546_7 NADH dehydrogenase I, F subunit [Shewanella oneidensis MR-1] Length = 461 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 167/407 (41%), Positives = 237/407 (58%), Gaps = 7/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ +D V K L + D I++ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 36 QPVWLEEYQTKQGYDAVRKALGQMSPDEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDES 95 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ Sbjct: 96 MNIRYLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAI 155 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 156 NLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 215 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA G++G PT VNNVE++ VP I+ G +WY + GTKL SG VN P Sbjct: 216 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYHTLALPGSEDHGTKLMGFSGKVNNP 275 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT EL E + GG+R G+ L A PGG+ L + A M G+ ++ Sbjct: 276 GVWELPFGITARELFEGYAGGMRSGY-RLKAWQPGGAGTGFLLPEHL-DAQMYTAGIGKV 333 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S ++ + + F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 334 GTRMGTGLAMAVDDSISMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRSLERGEGQ 393 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ L ++ + G+T CA A P+ IK FR E I Sbjct: 394 EGDLATLEQLCNFLGPGKTFCAHAPGAVEPLASAIKYFRSEFEAGIK 440 >gi|189218230|ref|YP_001938872.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum infernorum V4] gi|189185088|gb|ACD82273.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum infernorum V4] Length = 458 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 187/422 (44%), Positives = 259/422 (61%), Gaps = 23/422 (5%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + G + + K L +I+ EVK SGLRGRGGAGF TG+KW F+ + +P Sbjct: 22 DIDCYLQHGGYQVLKKALSLDPFFIVQEVKKSGLRGRGGAGFPTGVKWGFINHEKNTKPV 81 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADESEPGT KDR I+ +PH LIEG +I+++A AH +IY+RGEF R E L+ Sbjct: 82 YLLCNADESEPGTFKDRQIIYKDPHQLIEGMIISAYANRAHLGYIYIRGEFARGAEILEK 141 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196 A+ E LG N GYD++I V GAGAYICGEET L+ESLEGK+ PR+KPP FP Sbjct: 142 ALSEARERNFLGKNILGSGYDLEIYVFRGAGAYICGEETGLIESLEGKRAYPRIKPPYFP 201 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A +GLY CPT VNNVE++ V I+ G ++ G NN GT+++ +SG VN P E Sbjct: 202 AVLGLYMCPTIVNNVETLCHVKHIVDMGGEAFAQIGTPNNTGTRIWCVSGDVNKPGYYEY 261 Query: 257 SMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ------------------ 297 ITF EL+ + CGGIR G L AVIPGGSS L A + Sbjct: 262 PCGAITFGELLYEVCGGIRNGNK-LKAVIPGGSSAKVLRADKKYKIPKKKSDGTTEMVEV 320 Query: 298 -MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D+D + GS G+ +IVMD + D+++ + ++ FY HESCGQCTPCREG+ Sbjct: 321 GLEDIPLDFDTVAATGSMSGSGGIIVMDDTRDMVECLRNIAEFYAHESCGQCTPCREGSL 380 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 WM ++++R+ +G +K + LL +V+ +I GRTICA G+A +WP+Q ++ F ++ Sbjct: 381 WMKKILDRICRGKGRKEDSQLLLDVANHIAGRTICAFGEACSWPVQSFVEMFEEEFTAKV 440 Query: 417 DQ 418 + Sbjct: 441 KE 442 >gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 638 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 163/420 (38%), Positives = 232/420 (55%), Gaps = 7/420 (1%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGM 64 R+ + + S+ + +G + + K L + D +I VK SGLRGRGGAGF G+ Sbjct: 211 QRLTEKIGSIDPLSVDSYLEKGGYAAIKKALAEYQPDDVIAIVKDSGLRGRGGAGFPAGV 270 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWSF+PK D Y++ NADE EPGT KDR +M PH L+EG ++ +A GA +IY Sbjct: 271 KWSFLPK--GDMQKYVICNADEGEPGTYKDRILMEENPHGLLEGMMLCGYATGATVGYIY 328 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 +RGE+ R E LQ A+D+ G+LG N + DI + G GAY+CGEE++L+ S+E Sbjct: 329 IRGEYRRSIERLQRAIDQAREKGILGDNIFGSSFRFDIFIKEGGGAYVCGEESSLMNSME 388 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G PR +PPFPA G P+ VNNVE+ A VP I+ +GA+WY G E GTKL+ Sbjct: 389 GKRGYPRFRPPFPAGAGFLAKPSNVNNVETYASVPMIIEKGAAWYKSVGLETCTGTKLYC 448 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 +SG +N VE M T E+IE GI+ GGS+ L + + Sbjct: 449 LSGKLNRTGLVEMPMGTTLREIIETFGKGIK-NGKTFKFAQVGGSAGGILGPE-LMDLPL 506 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D D + G LG+ V+V D T + + + F++HESCGQC PCR GT + + Sbjct: 507 DIDSTIKAGVTLGSGVVLVCDEDTCPVDFLLDVLNFFEHESCGQCVPCRVGTRQLHHLAR 566 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + G A ++DL+ E +K ++ ++CALG + PI ++K FR D C Sbjct: 567 KFATGTAVPGDLDLMVEKAKLMK-NSLCALGQSPILPITTMLKYFREDFLRHCDPSLCCP 625 >gi|282855269|ref|ZP_06264601.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J139] gi|282581857|gb|EFB87242.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J139] gi|314923989|gb|EFS87820.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL001PA1] gi|314965053|gb|EFT09152.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA2] gi|314983073|gb|EFT27165.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA3] gi|315090606|gb|EFT62582.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA4] gi|315093907|gb|EFT65883.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL060PA1] gi|315104126|gb|EFT76102.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA2] Length = 444 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 190/399 (47%), Positives = 259/399 (64%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 L + +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + Sbjct: 18 SWKLLNYERQGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVN DESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + + Sbjct: 77 PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRV 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q AV E Y++G +G N GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +L+ GG+R G + L PGGSS P L + +DY+G+ + L Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++ Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L +++ NI GR+ CAL D A ++G I +FR E Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412 >gi|302521199|ref|ZP_07273541.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78] gi|302430094|gb|EFL01910.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78] Length = 461 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 196/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%) Query: 16 QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + +L ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 36 ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 94 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +PHYLVVNADESEPGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + Sbjct: 95 GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 154 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E YA+G LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 155 RLHEAVREAYAAGYLGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 214 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY CPT VNNVESIA VP IL RG W+ G E + G L+S+SGHV P Sbjct: 215 PFPAVEGLYACPTVVNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQ 274 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 275 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 331 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 332 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 391 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L +++ NI G++ CALGD AA PI +K FR E +D C F Sbjct: 392 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 442 >gi|15836913|ref|NP_297601.1| NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa 9a5c] gi|9105133|gb|AAF83121.1|AE003884_6 NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa 9a5c] Length = 444 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 207/418 (49%), Positives = 265/418 (63%), Gaps = 8/418 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF T Sbjct: 18 HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + Y G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L A IPGG S+P L A Q+ G Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLHG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVH 431 >gi|50843381|ref|YP_056608.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202] gi|289425637|ref|ZP_06427409.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK187] gi|289426990|ref|ZP_06428709.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J165] gi|50840983|gb|AAT83650.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202] gi|289153938|gb|EFD02631.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK187] gi|289159812|gb|EFD07997.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes J165] gi|313763289|gb|EFS34653.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA1] gi|313793603|gb|EFS41643.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA1] gi|313802886|gb|EFS44099.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA2] gi|313806332|gb|EFS44848.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA2] gi|313813679|gb|EFS51393.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA1] gi|313814971|gb|EFS52685.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA1] gi|313819443|gb|EFS57157.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA2] gi|313821249|gb|EFS58963.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA1] gi|313822296|gb|EFS60010.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA2] gi|313826146|gb|EFS63860.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA1] gi|313829365|gb|EFS67079.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA2] gi|313838154|gb|EFS75868.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL086PA1] gi|314916743|gb|EFS80574.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA4] gi|314919131|gb|EFS82962.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA1] gi|314921211|gb|EFS85042.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA3] gi|314930361|gb|EFS94192.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL067PA1] gi|314956144|gb|EFT00540.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA1] gi|314959677|gb|EFT03779.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA1] gi|314962251|gb|EFT06352.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA2] gi|314963235|gb|EFT07335.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA1] gi|314969778|gb|EFT13876.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA1] gi|314979336|gb|EFT23430.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA2] gi|314986332|gb|EFT30424.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA2] gi|314988571|gb|EFT32662.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA3] gi|315079688|gb|EFT51676.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA2] gi|315083921|gb|EFT55897.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA2] gi|315085058|gb|EFT57034.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA3] gi|315089487|gb|EFT61463.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA1] gi|315098099|gb|EFT70075.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA2] gi|315102683|gb|EFT74659.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA1] gi|315107937|gb|EFT79913.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA1] gi|315108825|gb|EFT80801.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA2] gi|327325714|gb|EGE67511.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA3] gi|327333127|gb|EGE74854.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL097PA1] gi|327447753|gb|EGE94407.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA2] gi|327451636|gb|EGE98290.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA3] gi|327452289|gb|EGE98943.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA2] gi|327452506|gb|EGE99160.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL092PA1] gi|328752122|gb|EGF65738.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA2] gi|328755066|gb|EGF68682.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL020PA1] gi|328757014|gb|EGF70630.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA1] gi|332676324|gb|AEE73140.1| NADH-quinone oxidoreductase subunit F [Propionibacterium acnes 266] Length = 444 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 191/399 (47%), Positives = 259/399 (64%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 L + +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + Sbjct: 18 SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVN DESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + + Sbjct: 77 PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q AV E Y++G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +L+ GG+R G + L PGGSS P L + +DY+G+ + L Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++ Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L +++ NI GR+ CAL D A ++G I +FR E Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412 >gi|327325781|gb|EGE67573.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL103PA1] Length = 444 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 190/399 (47%), Positives = 259/399 (64%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 L + +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + Sbjct: 18 SWKLLNYERQGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVN DESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + + Sbjct: 77 PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRV 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q AV E Y++G +G N GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +L+ GG+R G + L PGGSS P L + +DY+G+ + L Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++ Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L +++ NI GR+ CAL D A ++G I +FR E Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412 >gi|333025114|ref|ZP_08453178.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071] gi|332744966|gb|EGJ75407.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071] Length = 463 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 196/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%) Query: 16 QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + +L ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 38 ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 96 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +PHYLVVNADESEPGTCKD ++ PH LIEG VIA +AI + AFIY+RGE + Sbjct: 97 GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 156 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E YA+G LG N G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+P Sbjct: 157 RLHEAVREAYAAGYLGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 216 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY CPT VNNVESIA VP IL RG W+ G E + G L+S+SGHV P Sbjct: 217 PFPAVEGLYACPTVVNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQ 276 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + IT +L++ G L PGGSS P + +DY+G+ GS Sbjct: 277 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 333 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + G + Sbjct: 334 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 393 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L +++ NI G++ CALGD AA PI +K FR E +D C F Sbjct: 394 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 444 >gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16] gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16] Length = 626 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 151/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + +++ + +K L E + I E+ SGLRGRGG Sbjct: 141 FYHKQHRIVLENCGTTDAEDIDEYLAKDGYSAFEKALFEMTDEAICKEILDSGLRGRGGG 200 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW + + Y+V N DE +PG DR IM PH++IEG +IA A G+ Sbjct: 201 GFPAGRKWESVRQQPKG-KKYVVCNGDEGDPGAFMDRSIMEGNPHSIIEGMLIAGVAAGS 259 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ L+ A+ GLLG + + + V+ GAGA++CGE +A Sbjct: 260 DEGYIYVRAEYPLAVSRLRNAIARAEELGLLGDHILGTDFSFHLHVNRGAGAFVCGEGSA 319 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L S+EG +G PR+KPP GL+ PT +NNVE+ + VP I+R G+ WY G E + Sbjct: 320 LTASIEGNRGMPRVKPPRTVEHGLWAQPTVLNNVETFSTVPLIIRNGSEWYRSIGTEKSP 379 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK F+++G+V +E M T E+I GGI+ AV GG S CL Sbjct: 380 GTKAFALTGNVVNTGLIEVPMGTTLREVIFDIGGGIK-DGKKFKAVQIGGPSGGCLTEEH 438 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + MD+D LK++G+ +G+ ++VMD T +++ F ++ESCG+C PCREGT Sbjct: 439 L-DMPMDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTRR 497 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+V ++DLL ++ I ++C LG +A P+Q +K FR + Sbjct: 498 MLEILTRIVNNEGSLEDLDLLETLANTITETSLCGLGQSACKPVQSTLKYFRDEYLAHVV 557 Query: 418 QYHRCN 423 H C Sbjct: 558 DKH-CP 562 >gi|304311499|ref|YP_003811097.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] gi|301797232|emb|CBL45452.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1] Length = 455 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 178/416 (42%), Positives = 253/416 (60%), Gaps = 10/416 (2%) Query: 9 FTNLYGLQGKSLSD---SMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGM 64 T Y G+S+ D + + + K L E + E+KASGLRGRGGAGF TG+ Sbjct: 29 LTWRYSTHGQSILDIKTYEAMEGYAALRKALTEMKPADVQAEIKASGLRGRGGAGFPTGV 88 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWS +P Y+V NADE EPGT KDR +M PH L+E +++++AI A A+I+ Sbjct: 89 KWSLIPMGPDAGAKYMVCNADEMEPGTFKDRMLMETNPHQLVESMIVSAYAIQAKRAYIF 148 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 +RGE+I E L AA+ E +A+G LG N G+ VD++VH GAG YICGEETAL+ SLE Sbjct: 149 LRGEYIEAAERLNAAIQEAHAAGYLGENILGSGWGVDLMVHTGAGRYICGEETALINSLE 208 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKL 241 G++ PR KPPFP GL+G PT VNNVE+++ VP IL RGA W+ G G + GTKL Sbjct: 209 GRRANPRSKPPFPQIAGLWGRPTIVNNVETVSNVPAILLRGADWFKGLSQGLSGDAGTKL 268 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 + +SG V +P E + IT EL+ H GG+R G + + +PGG+S L + Sbjct: 269 YGVSGRVKHPGLWELPIGITCRELLYNHAGGMREGLEMV-TWLPGGASTDFLMPEHL-DL 326 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MDYD + + GS LGT ++V+D +I+ + L F+ ESCG CTPCR+G W +++ Sbjct: 327 AMDYDTIMKNGSRLGTGLIMVVDNRHNIVSVVRNLEQFFARESCGWCTPCRDGLPWTVKL 386 Query: 362 MERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ + G Q +++ L ++++ + G+T CAL A P+Q +K FRP E+ I Sbjct: 387 LQSIEAGQGQAGDLETLDQMTRFLGPGKTFCALAPGAMEPLQSALKFFRPEFEKGI 442 >gi|27378248|ref|NP_769777.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110] gi|27351395|dbj|BAC48402.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110] Length = 518 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 147/413 (35%), Positives = 221/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + +SL D + G + +++ L G + I+ EV ASGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGVIDPRSLEDYRAHGGYKGLERALSLGSEAILTEVTASGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + +D ++V NADE + GT DR IM +P +IEG A +GA Sbjct: 158 PTGIKWKTVAQAKAD-RKFIVCNADEGDSGTFADRMIMEGDPFLVIEGMTTAGITVGATK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ E+++AA+ G LG Y D+ V GAGAY+CGEET+LL Sbjct: 217 GYIYIRSEYPHAVEAMKAAIQAAKRGGYLGDKIGGSTYSFDLEVRVGAGAYVCGEETSLL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG++G R KPP PA+ GL+G PT +NNV S A +P IL GA Y+ FG +RGT Sbjct: 277 ESLEGRRGIVRAKPPLPAHHGLFGKPTVINNVLSFAAIPFILAEGAKAYADFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + E + +T EL++ GG + AV GG P + Sbjct: 337 MPIQLAGNIRHGGLYETAFGVTLGELVDDIGGGT-FTGRPVRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G ++V D S D+ + F ESCG+CTPCR G+ + Sbjct: 395 DTPFDYEAFAARDGLIGHGGIVVFDDSVDMRRQARFAMEFCAVESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +E+++ G + L+ ++ ++ ++CALG +P+ +K+FR Sbjct: 455 ETIEKIINGERVSENLALVEDLCNTMKFGSLCALGGFTPYPVLSALKHFREDF 507 >gi|167034691|ref|YP_001669922.1| NADH dehydrogenase subunit I F [Pseudomonas putida GB-1] gi|166861179|gb|ABY99586.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida GB-1] Length = 454 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 166/406 (40%), Positives = 235/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L++ S+ + K L +D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLAEYESKNGYAAARKALAQMSQDDIVQAVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L KG + Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + GRT CA A P+ IK FR E + Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433 >gi|315081016|gb|EFT52992.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL078PA1] Length = 444 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 190/399 (47%), Positives = 258/399 (64%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 L + +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + Sbjct: 18 SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVN DESEPGTCKD +M PH L+EG +IAS+AI A AFIY+RGE + + Sbjct: 77 PTYLVVNGDESEPGTCKDMPLMMASPHILVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q AV E Y++G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT +NNVESI+ VP+ILR G W+ G E + G ++S+SGH+ +P E Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +L+ GG+R G + L PGGSS P L + +DY+G+ + L Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++ Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L +++ NI GR+ CAL D A ++G I +FR E Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412 >gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 579 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 153/423 (36%), Positives = 227/423 (53%), Gaps = 5/423 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +Q R + + S+ D ++ ++ + LE G D II +V S LRGRGG G Sbjct: 89 FYANQHRLVLRRSGHIDPTSIEDYIATDGYEGLALALELGPDEIIRQVTDSYLRGRGGGG 148 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW D P Y++ N DE +PG DR +M +PH++IEG +I ++A+GA Sbjct: 149 FRTGYKWKSCRDAE-DFPKYVIANGDEGDPGAFMDRSLMEGDPHSVIEGMIIGAYAVGAR 207 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ L+ A+++ GLLG N +D DI + G GA++CGE +AL Sbjct: 208 EGYIYVRNEYPLAVRRLEIAIEKAREWGLLGKNILGSAFDFDIQICKGGGAFVCGESSAL 267 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG G PR+K GL+ PT +NNVE+ A VP IL +G WY G + N G Sbjct: 268 MRSIEGFPGVPRVKYIHATEQGLWDKPTVLNNVETWANVPIILMKGVEWYKTLGTDRNHG 327 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+F++ G V VE M +T ++I GG AV GG S C+PA + Sbjct: 328 TKIFALVGKVKNTGLVEVPMGVTLRKIIYDIGGGTLKD-KAFKAVQTGGPSGGCIPAS-L 385 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L + GS +G+ +IVMD + ++ F ESCG+CTPCREG + Sbjct: 386 LDLPVDFDTLVKSGSMMGSGGMIVMDERSCMVDVAKYFIDFLVEESCGKCTPCREGLKVL 445 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++ L +G +++ LL +++K + +C LG AA P+ +K F EE +D Sbjct: 446 QKLLRDLSEGKGSLKDVALLEDMAKELSKTALCGLGKTAANPVLSTLKYFHEEYEEHVDG 505 Query: 419 YHR 421 Y R Sbjct: 506 YCR 508 >gi|114777366|ref|ZP_01452363.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans PV-1] gi|114552148|gb|EAU54650.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans PV-1] Length = 425 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 205/399 (51%), Positives = 266/399 (66%), Gaps = 5/399 (1%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +L+ + G + + +L++ I++E+K SGLRGRGGAGF TG+KWSF+P+ +P Sbjct: 24 TLAVARKHGAYAFLPTVLKEFTAAKIVDEMKLSGLRGRGGAGFPTGLKWSFVPRNT-GKP 82 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDRDIMR +PH LIEG ++A FA+ A+IYVRGEF+ E + Sbjct: 83 TYLLCNADEGEPGTFKDRDIMRFDPHLLIEGMIMAGFALNVRDAYIYVRGEFLHEANVMN 142 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E YA+ LLG N GY + + VH GAGAYICGEETAL+ESLEGK G+PR KPPFP Sbjct: 143 EAIREAYAANLLGENILGSGYSMHLTVHRGAGAYICGEETALIESLEGKPGRPRFKPPFP 202 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A G Y CPT VNNVE++A VP IL G +W++ G NN G K+FS+SGHVN P E Sbjct: 203 AVEGFYRCPTVVNNVETLATVPAILEHGGAWHAAIGVPNNTGCKIFSVSGHVNKPGNYEV 262 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M + LIE++CGG+ VIPGGSS P L A A + YDG+ + GS LG Sbjct: 263 PMGTSLKTLIEEYCGGL-QHGSVPKVVIPGGSSTPWLTAEHYE-APLTYDGMIKAGSMLG 320 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + A+IVMD + D+I RL+ FY HESCGQCTPCREGTGW+ R+M R+ G A +I Sbjct: 321 SGAIIVMDETADLIAVTRRLAHFYAHESCGQCTPCREGTGWLERIMIRVENGQACAEDIQ 380 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +L + + ++ GRTICAL D AA PI ++K+F + R Sbjct: 381 VLSDAATHMAGRTICALADGAAAPILSMLKHFPDEVRAR 419 >gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 634 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 147/426 (34%), Positives = 238/426 (55%), Gaps = 7/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q +I N + +++ D++ G + + K+L ++ +I EV SGLRGRGG Sbjct: 143 FYKKQVKIALKNCGVIDPENMEDALGVGAYTALGKVLTTMTQEEVIKEVSESGLRGRGGG 202 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + D Y++ NADE +PG DR I+ +P+ ++E I +AIGA Sbjct: 203 GFPTGRKWEAARRANGD-VKYVICNADEGDPGAFMDRAILEGDPNLVLEAMAICGYAIGA 261 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +IY+R E+ L+ A+ + GLLGSN G++ DI + +GAGA++CGE TA Sbjct: 262 SKGYIYIRAEYPLAVHRLKVALKQAKDIGLLGSNILNTGFNFDIEIKYGAGAFVCGEATA 321 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+P +KPP + GL+ PT VNNVE+ A V I+ GA WYS G E + Sbjct: 322 LIHSIEGLRGEPTMKPPRTSEKGLWQRPTCVNNVETFANVSQIINNGAKWYSSIGAEKSA 381 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G++N VE M + +++ + GGI L A+ GG S C+P Sbjct: 382 GTKVFALAGNINNVGLVEIPMGMPLRDIVYEIGGGIINN-KALKAIQTGGPSGGCIPVEY 440 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + ++YD L +GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 441 L-DLPIEYDTLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFSVDESCGKCTPCRIGNKR 499 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ +++++ G A + +++ + E+ + + ++C LG+AA P+ +K F +E + Sbjct: 500 ILELLKKITDGTAVEEDLEKINELCEVVRDASLCGLGEAAPNPVLSTLKFFNNEYKEHVI 559 Query: 418 QYHRCN 423 +C Sbjct: 560 D-KKCT 564 >gi|71275685|ref|ZP_00651970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon] gi|71897859|ref|ZP_00680085.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] gi|170729494|ref|YP_001774927.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12] gi|71163576|gb|EAO13293.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon] gi|71732414|gb|EAO34468.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1] gi|167964287|gb|ACA11297.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12] Length = 444 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 207/418 (49%), Positives = 266/418 (63%), Gaps = 8/418 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF T Sbjct: 18 HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + Y G LG N G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L A IPGG S+P L A Q++G Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLQG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVH 431 >gi|54024631|ref|YP_118873.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM 10152] gi|54016139|dbj|BAD57509.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM 10152] Length = 441 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 196/415 (47%), Positives = 263/415 (63%), Gaps = 9/415 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 Q +L ++ + L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 16 QSWTLDTYRRHDGYEGLRIALGMEPDQVIQTVKDAGLRGRGGAGFPTGMKWGFIPQGPGP 75 Query: 76 R----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 PHYLVVNADESEPGTCKD ++ PH L+EG +IAS+AI A+ AFIY+RGE + Sbjct: 76 DGTVKPHYLVVNADESEPGTCKDIPLLMATPHALVEGAIIASYAIRANTAFIYLRGEVVP 135 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 L+AAVD+ YA+GLLG + G+D+++IVH GAGAYICGEETALL+SLEG++GQPR Sbjct: 136 VLRRLRAAVDQAYAAGLLGRDILGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPR 195 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 L+PPFPA GLY CPT VNNVESIA VP ILR G W+ G E + G ++S+SGHV Sbjct: 196 LRPPFPAVAGLYACPTVVNNVESIASVPPILRYGTDWFRSMGSEKSPGFTIYSLSGHVTR 255 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E + IT EL++ G L PGGSS P + +DY+G+ Sbjct: 256 PGQYEAPLGITLRELLDYADG--VRAGHRLKFWTPGGSSTPLFTDEHL-DVPLDYEGVAA 312 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+++++ R+ G Sbjct: 313 AGSMLGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQLLRRIETGGG 372 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++D L +++ +I G++ CALGD AA PI +K FR + + C F Sbjct: 373 TEADLDTLLDITDSINGKSFCALGDGAASPIVSSVKYFRDEYLAHM-RGDGCPFD 426 >gi|330958155|gb|EGH58415.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 452 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 165/406 (40%), Positives = 231/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLEEYQAKDGYAAARKALTQQTPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAR 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + KG Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIEKGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FRP E I Sbjct: 388 PGDIETLQGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433 >gi|104782525|ref|YP_609023.1| NADH dehydrogenase I subunit F [Pseudomonas entomophila L48] gi|95111512|emb|CAK16232.1| NADH dehydrogenase I chain F [Pseudomonas entomophila L48] Length = 454 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 167/406 (41%), Positives = 235/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L++ S+ + K L E D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLAEYESKNGYAAARKALAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L KG + Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + GRT CA A P+ IK FR E + Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433 >gi|193215709|ref|YP_001996908.1| NADH-quinone oxidoreductase subunit F [Chloroherpeton thalassium ATCC 35110] gi|193089186|gb|ACF14461.1| NADH-quinone oxidoreductase, F subunit [Chloroherpeton thalassium ATCC 35110] Length = 432 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 191/399 (47%), Positives = 252/399 (63%), Gaps = 5/399 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + G + N+ K L + I+ EVK SGLRGRGGAGF TGMKW F+ K Sbjct: 19 HRIEVYEAGGGYQNLRKALVMKPEEIVGEVKKSGLRGRGGAGFPTGMKWGFVGKAKP--- 75 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL VN DESEPG+ KDR I PH LIEGC+I+ +A+ +IY+RGE+ + + ++ Sbjct: 76 RYLAVNGDESEPGSFKDRQIFEFNPHQLIEGCLISCYALDVETCYIYIRGEYAKWIDIVE 135 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E G +G N + +I VH GAGAYICGEE+AL+ S+EGK+ PRLKPPFP Sbjct: 136 TALAEARQKGYVGKNILGKDFSAEIYVHRGAGAYICGEESALMNSIEGKRAYPRLKPPFP 195 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NNVE+I +P I+ GA YS G ++ G L+ +SGHVN P E Sbjct: 196 AVVGLWGQPTVINNVETITNIPLIIEIGAEAYSKIGAPDHPGPMLYGLSGHVNKPGIYEY 255 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +LI G G L AVIPGGSS+P L A + G M+ D LK+ G+ +G Sbjct: 256 PSGMAITDLIYDIGG-GIRGGKKLKAVIPGGSSMPILRADMIEGVTMNADSLKKAGTSIG 314 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 TA +I+MD TDI+ AI RL+ FY HESCGQCTPCREGTGW+ + ++ ++ A+ R+ID Sbjct: 315 TAGMIIMDEDTDIVAAIARLTHFYHHESCGQCTPCREGTGWIEHIYKKFLRDEAEPRDID 374 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 LL + K IE RTICAL D AAWP++ I+ FR E+ Sbjct: 375 LLLSLCKQIEQRTICALADGAAWPVRFSIERFREEYEKH 413 >gi|66219967|gb|AAY43000.1| Nqo1 [Rhodothermus marinus] Length = 443 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 195/405 (48%), Positives = 262/405 (64%), Gaps = 6/405 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 L + G + + ++L +I EVK S LRGRGGAGF TG+KWSFMP Sbjct: 25 RDLHRLEVYEAHGGYQTLREVLTSDRWDPKSVIEEVKKSKLRGRGGAGFPTGLKWSFMP- 83 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 DRP +L N DESEPGT KDR +M PH + EG +IA +A+ ++YVRGEF R Sbjct: 84 PVDDRPRFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFAR 143 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 E ++ +++ YA G +G N + DI++H GAGAYICGEE++L+ES+EGK+ PR Sbjct: 144 WIEHMERELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPR 203 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 +KPPFPA GL+G PTT+NNVE++A VP ILR G W++ G N+ G L+ ISGHVN Sbjct: 204 IKPPFPAQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNR 263 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E + +LI + GGIRGG L AVIPGGSS P L A + G MD + L+E Sbjct: 264 PGVYEYPTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLRE 322 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS +GTA ++V+D TD++ + R++ FY HESCGQCTPCREGTGW+ ++ R+ +G Sbjct: 323 AGSMMGTAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIEEGEG 382 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + R++DLL ++ +EGRT+CAL DAAAWP++ I FR E R Sbjct: 383 RLRDLDLLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427 >gi|91200367|emb|CAJ73413.1| strongly similar to NADH dehydrogenase I chain F [Candidatus Kuenenia stuttgartiensis] Length = 427 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 156/413 (37%), Positives = 236/413 (57%), Gaps = 7/413 (1%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP-KVCS 74 +L + G + + K+L E + +K S LRGRGGAGF TGMKWSF+P + Sbjct: 18 PMNLKEYEQAGGYQALRKVLKEMQPQDVQKIIKDSNLRGRGGAGFPTGMKWSFVPLGDDA 77 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + YL+ NADE EPG KDR ++ PH LIEG +IA++AI A+ +++ +R + E Sbjct: 78 PKDKYLICNADEMEPGAFKDRLLLEGNPHQLIEGMIIAAYAIQANKSYVVLRWAYKEAAE 137 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + A+ E +G +G N GY +++ +H G YI GEETA LE+LEGK+ PR KP Sbjct: 138 LIFKALAEAEQAGYIGQNILGSGYALELYLHTSIGRYIRGEETAHLEALEGKRAIPRSKP 197 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+ A GL+G PT VNNVE++ V I+ G+ W+ GTK++ +SG V P T Sbjct: 198 PYSAVSGLFGKPTIVNNVETLCCVSHIVNNGSEWFKNLSLNGVGGTKIYGVSGRVKNPGT 257 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + + E+I +H GG++ G+ L ++PGG+S L + MDY +++ GS Sbjct: 258 WELPLGTSMREIIFEHAGGMKEGF-RLKGILPGGASTDFLTEEHL-DVNMDYSSVEKAGS 315 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT +I++D T + + L F+ ESCG CTPCREG W+ +++ + +G + Sbjct: 316 RLGTGTLIILDDKTCPVGMVHNLEHFFAQESCGWCTPCREGLPWVEKILLSIEEGKGKLE 375 Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D+L + N+ GRT CAL A P+Q IK FR I++ +C ++ Sbjct: 376 DLDILSFHAVNLGPGRTFCALAPGAVEPLQSSIKYFREDYVRHINE-KKCPWR 427 >gi|254469752|ref|ZP_05083157.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062] gi|211961587|gb|EEA96782.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062] Length = 518 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 154/414 (37%), Positives = 222/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ + G+ SL + + + + L I+ EV SGLRGRGGAG Sbjct: 98 FLKRQTRLTFSRCGITDPLSLEHYEAHHGFLGLKRALAMTPAEIVQEVTDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW+ + KV D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 FPTGIKWNTVLKVQGD-QKYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMAIAGIAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L A+ +G+LG + + D+ V GAGAY+CGEET+L Sbjct: 217 KGYIYTRSEYPHAIAILHDAIQIARKAGILGPSVMGSEHAFDMEVREGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA GL+G PT VNNV S+A VP I+ RGA +Y +G + G Sbjct: 277 LNSLEGKRGIVRAKPPLPAIEGLFGKPTVVNNVMSLASVPIIMDRGARFYRDYGVGYSHG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ E + +T +ELI GG + AV GG P + Sbjct: 337 TIPIQLTGNIKNSGLFETAFGLTLNELIYDIGGGT-LSGRPVKAVQVGGPLGAYFPPS-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I DY+ E +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTIFDYEAFVERNGMIGHAGIVVFDDTVDMLKQARFAMEFCAIESCGKCTPCRIGSVRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V++R+ KG +++I+LL ++ ++ ++CALG A +P+ + +F Sbjct: 455 VEVLDRIAKGDQPEQQIELLTDLCDTMKMGSLCALGGFAPYPVMSSLTHFPQDF 508 >gi|268317708|ref|YP_003291427.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM 4252] gi|262335242|gb|ACY49039.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM 4252] Length = 443 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 195/405 (48%), Positives = 262/405 (64%), Gaps = 6/405 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 L + G + + ++L +I EVK S LRGRGGAGF TG+KWSFMP Sbjct: 25 RDLHRLEVYEAHGGYQTLREVLTSDRWDPKSVIEEVKKSKLRGRGGAGFPTGLKWSFMP- 83 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 DRP +L N DESEPGT KDR +M PH + EG +IA +A+ ++YVRGEF R Sbjct: 84 PVDDRPRFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFAR 143 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 E ++ +++ YA G +G N + DI++H GAGAYICGEE++L+ES+EGK+ PR Sbjct: 144 WIEHMERELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPR 203 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 +KPPFPA GL+G PTT+NNVE++A VP ILR G W++ G N+ G L+ ISGHVN Sbjct: 204 IKPPFPAQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNR 263 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E + +LI + GGIRGG L AVIPGGSS P L A + G MD + L+E Sbjct: 264 PGVYEYPTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLRE 322 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS +GTA ++V+D TD++ + R++ FY HESCGQCTPCREGTGW+ ++ R+ +G Sbjct: 323 AGSMMGTAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIDEGEG 382 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + R++DLL ++ +EGRT+CAL DAAAWP++ I FR E R Sbjct: 383 RLRDLDLLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427 >gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 633 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 229/426 (53%), Gaps = 8/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 + Q +I N + S+ + +++ + L II VK SGLRGRGG Sbjct: 148 FYSQQTKIAIRNCGYIDPDSIEEYIAKRGYYAFVNALTNTKPSDIIKTVKESGLRGRGGG 207 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW K +++ NADE +PG DR I+ +PH+++EG +IA+ AIG+ Sbjct: 208 GFPTGIKWETCAKHHG--NRHIICNADEGDPGAYMDRSILEGDPHSVLEGMLIAALAIGS 265 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 F YVR E+ L A+ + A GLLG N G+ ++ + GAGA++CGE TA Sbjct: 266 SSGFFYVRNEYPLAVSRLITAIKQAEAYGLLGGNIAGTGFSFNVKISRGAGAFVCGESTA 325 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG G+PR K G P+ +NNVE+ A +P I+ +GA W+SG G E+++ Sbjct: 326 LMSSLEGLVGRPRAKYVHTVEKGFRDSPSNLNNVETYANIPPIVLKGAPWFSGMGTEHSK 385 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G + VE M I +++ GG+ AV GG S C+P Sbjct: 386 GTKVFSLVGKIKNTGLVEVPMGINLKDIVFSIGGGVP-KKKKFKAVQTGGPSGGCIP-EN 443 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY L E+GS +G+ +IVMD+ T ++ F K ESCGQC PCREG Sbjct: 444 LIDLPVDYQKLAEVGSIMGSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKQ 503 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ + +G + +I+LL E+ I+ ++C LG +A P+ I FR E I Sbjct: 504 MLDILTDICQGNGKDGDIELLEELGSMIQKFSLCGLGTSAPNPVLTTILYFRDEYEAHI- 562 Query: 418 QYHRCN 423 ++ +C Sbjct: 563 KHKKCP 568 >gi|289625430|ref|ZP_06458384.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649287|ref|ZP_06480630.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi str. 2250] gi|298487552|ref|ZP_07005594.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157936|gb|EFH99014.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866834|gb|EGH01543.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 452 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 164/406 (40%), Positives = 231/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQAKDGYAAARKALTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + KG Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|71734155|ref|YP_275283.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554708|gb|AAZ33919.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323792|gb|EFW79876.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. B076] gi|320327931|gb|EFW83936.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. race 4] Length = 452 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 164/406 (40%), Positives = 231/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQAKDGYAAARKALTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + KG Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|26990817|ref|NP_746242.1| NADH dehydrogenase I subunit F [Pseudomonas putida KT2440] gi|148546980|ref|YP_001267082.1| NADH dehydrogenase subunit I F [Pseudomonas putida F1] gi|24985823|gb|AAN69706.1|AE016606_9 NADH dehydrogenase I, F subunit [Pseudomonas putida KT2440] gi|148511038|gb|ABQ77898.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida F1] Length = 453 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 165/406 (40%), Positives = 233/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L++ S+ + K L D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLAEYESKNGYAAARKALAQMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L G + Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALENGQGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + GRT CA A P+ IK FR E + Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433 >gi|87303135|ref|ZP_01085933.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Synechococcus sp. WH 5701] gi|87282302|gb|EAQ74262.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Synechococcus sp. WH 5701] Length = 528 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 146/420 (34%), Positives = 243/420 (57%), Gaps = 6/420 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI G + L +++ G + ++++L + ++ E++ SGLRGRGGA Sbjct: 110 FFQRQRRIVLEHCGLIDPTDLEQAIAVGAYGQLERVLRGWSPEQVVTELQRSGLRGRGGA 169 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + ++ +V NADE +PG DR ++ +PH ++EG IA++A+GA Sbjct: 170 GYPTGLKWATVARMP-GARKVVVCNADEGDPGAFMDRAVLEGDPHRVLEGMAIAAYAVGA 228 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 FIY+R E+ E L+ A+++ G LG+ G+ + + GAGAY+CGEETA Sbjct: 229 DHGFIYIRAEYELAIERLRLAIEQAVVRGRLGAALFGTGFGFTLELRVGAGAYVCGEETA 288 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G PR +PP+PA G+ G PT +NNVE+ A V ILR GA W++ G + Sbjct: 289 LIASIEGKRGTPRPRPPYPAERGVGGRPTLINNVETFANVAPILREGADWFAAIGTAGSS 348 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++GHV VE M + ++ + G G + AV GG S C+PA + Sbjct: 349 GTKVFSLTGHVRRGGLVEVPMGTSLATVVLEMGEGSPQG-SAVKAVQTGGPSGGCVPADR 407 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+ L+ +G+ +G+ ++V+D+ TD++ F + ESCG+C PCR GT Sbjct: 408 L-DTPLDYESLQALGTIMGSGGMVVLDQGTDMVALAAYFMAFCREESCGKCVPCRAGTVQ 466 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++E+++ G A + ++D L + + ++C LG +A P+ ++ FR R++ Sbjct: 467 LHGLLEKILAGQASQADLDQLETLGAMVMDTSLCGLGQSAPKPMLSTLRYFRGDYLARLE 526 >gi|330830049|ref|YP_004393001.1| NADH dehydrogenase I subunit F [Aeromonas veronii B565] gi|328805185|gb|AEB50384.1| NADH dehydrogenase I, F subunit [Aeromonas veronii B565] Length = 461 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 165/407 (40%), Positives = 235/407 (57%), Gaps = 7/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ ++ K L + D I++ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 36 QPVWLEEYQAKQGYEAARKALGQMSPDEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDES 95 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ Sbjct: 96 MNIRYLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISARALKAYRGYIFLRGEYVDAAI 155 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 156 HLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 215 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA G++G PT VNNVE++ VP I+ G +WY G + GTKL SG VN P Sbjct: 216 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYHGLALPGSEDHGTKLMGFSGKVNNP 275 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT EL E + GG++ G+ L A PGG+ L + A M G+ ++ Sbjct: 276 GVWELPFGITARELFENYAGGMKSGY-RLKAWQPGGAGTGFLLPEHL-DAQMYTAGIGKV 333 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S ++ + + F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 334 GTRMGTGLAMAVDDSISMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 393 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ L ++ + G+T CA A P+ IK FR E I Sbjct: 394 SGDLATLEQLCGFLGPGKTFCAHAPGAVEPLASAIKYFRSEFEAGIK 440 >gi|325277474|ref|ZP_08143079.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51] gi|324097390|gb|EGB95631.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51] Length = 453 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 165/406 (40%), Positives = 233/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L++ S+ + K L D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLAEYESKNGYAAARKALADMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L G + Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALENGQGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + GRT CA A P+ IK FR E + Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433 >gi|295131455|ref|YP_003582118.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK137] gi|291376367|gb|ADE00222.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes SK137] gi|313773335|gb|EFS39301.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL074PA1] gi|313810762|gb|EFS48476.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA1] gi|313831073|gb|EFS68787.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL007PA1] gi|313833203|gb|EFS70917.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL056PA1] gi|314973943|gb|EFT18039.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA1] gi|314976871|gb|EFT20966.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL045PA1] gi|314984993|gb|EFT29085.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA1] gi|315097694|gb|EFT69670.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL038PA1] gi|327330838|gb|EGE72583.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA2] gi|327442869|gb|EGE89523.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA2] gi|327445261|gb|EGE91915.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA1] gi|328761550|gb|EGF75068.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL099PA1] Length = 444 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 190/399 (47%), Positives = 258/399 (64%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 L + +G + + K L D +++ VK + LRGRGGAGF TGMKWSF+PK + Sbjct: 18 SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVN DESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+RGE + + Sbjct: 77 PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 Q AV E Y++G +G N GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT +NNVESI+ VP+ILR W+ G E + G ++S+SGH+ +P E Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNSKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T +L+ GG+R G + L PGGSS P L + +DY+G+ + L Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+ D +T +++ R FYKHESCG+CTPCREGT W+++++ R+ G Q+ ++ Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L +++ NI GR+ CAL D A ++G I +FR E Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412 >gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] Length = 632 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 230/428 (53%), Gaps = 11/428 (2%) Query: 4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGAGFS 61 Q R + + + +++ + + G + + + + SGLRGRGG GF Sbjct: 140 RQSRSVLASCGLIDPENIREYIYGGGYRAAMEAYTAHTPEELCTIFTDSGLRGRGGGGFP 199 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G KW+ + +D YL+ N DE +PG DR I+ PH+++EG +IA+ AIGA Sbjct: 200 SGKKWALTLRQQAD-KKYLICNGDEGDPGAFMDRSILEGNPHSVVEGMMIAARAIGAEAG 258 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVR E+ E ++ A+D GLLG + G DI V GAGA++CGE +A++ Sbjct: 259 YVYVRAEYPLAVERIRKAIDAARELGLLGEDLFGTGACFDIKVMEGAGAFVCGEASAMVA 318 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+ G +G PR KPP A GL+ PT VNNVE++A VP +LR+G+ Y G + GTK Sbjct: 319 SIMGGRGMPRPKPPRTAEKGLWDKPTVVNNVETLATVPLVLRKGSKGYRTVGTSGSPGTK 378 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPCLPA 295 F+++GHV +E T E+I + GG+ D AV GG S CL Sbjct: 379 TFALTGHVANTGLIEVPFGTTLREIIFEIGGGVLDEKGNVDNDAFKAVQIGGPSGGCLTR 438 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + +D+D L +G+ +G+ ++VM+RST +++ F + ESCG+C PCREGT Sbjct: 439 EHL-DIPLDFDSLGGIGAMVGSGGLVVMNRSTCMVQVARFFMQFTQAESCGKCVPCREGT 497 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 M+ +++ +++G A + I LL + + + ++C LG AA P+ ++ FR E Sbjct: 498 RQMLDLLDDIIEGRADESTIPLLESLCRTVARGSLCGLGKAAPSPVLSTLRYFRQEYESH 557 Query: 416 IDQYHRCN 423 + RC Sbjct: 558 VVD-KRCP 564 >gi|260223138|emb|CBA33401.1| NADH-quinone oxidoreductase subunit F [Curvibacter putative symbiont of Hydra magnipapillata] Length = 619 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 209/398 (52%), Positives = 263/398 (66%), Gaps = 11/398 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ L G SL D ++RG + + KIL K +D +I VK SGLRGRGGAGF Sbjct: 122 IYAGLNGSN-WSLQDYVARGGYQALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 180 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ YLV N+DE EPGTCKDRDI++ PH +IEG IA++A+G Sbjct: 181 TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGITVG 239 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + +AA++E A+G LG N + + HG GAYICGEETALLE Sbjct: 240 YNYIHGEIFASYDRFEAALEEARAAGFLGDNILGSNFSFQLHAAHGFGAYICGEETALLE 299 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 300 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 359 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++S+SG V P E M F +L+E G G NL AVIPGGSS P LPA + Sbjct: 360 IYSVSGDVERPGNYEIPMGTPFSKLLELAGG--VRGGRNLKAVIPGGSSSPVLPASIIME 417 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD + ++KA+ RLS FY HESCGQCTPCREGTGW+ R Sbjct: 418 CTMDYDSIAKAGSMLGSGAVIVMDETRCMVKALQRLSYFYMHESCGQCTPCREGTGWLSR 477 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 +++R+ G + ++DLL V++NI+GRTICALGDAAA Sbjct: 478 MVDRIEGGQGRPSDMDLLDNVAENIQGRTICALGDAAA 515 >gi|313498027|gb|ADR59393.1| NADH-quinone oxidoreductase subunit F [Pseudomonas putida BIRD-1] Length = 458 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 165/406 (40%), Positives = 234/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L++ S+ + K L D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLAEYESKNGYAAARKALAQMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G + Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALERGQGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + GRT CA A P+ IK FR E + Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433 >gi|294810790|ref|ZP_06769436.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b] gi|294441978|gb|EFG10799.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b] Length = 577 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 146/404 (36%), Positives = 229/404 (56%), Gaps = 6/404 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + +L K +I+ +K SGLRGRGG Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW F K SD Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ L+ A+++ GLLG + + DI + +GAGA++CGEETA Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNNVE++A +P IL +GA W++ G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ++ ++ ++ +G ++++D L + + I+ +C LG + P+ Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPV 549 >gi|150026258|ref|YP_001297084.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum JIP02/86] gi|149772799|emb|CAL44283.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum JIP02/86] Length = 455 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 194/411 (47%), Positives = 260/411 (63%), Gaps = 16/411 (3%) Query: 21 SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G + +V+K L+ D ++ EVK SG+RGRGGAGF GMKWSF+ K S +P + Sbjct: 19 EVYRKEGGYASVEKALKTLTPDEVVEEVKTSGIRGRGGAGFPAGMKWSFIDK-KSGKPRH 77 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 LV NADESEPGT KDR +M PH LIEG + +S+A+GA+ ++IY+RGE++ + L+ A Sbjct: 78 LVCNADESEPGTFKDRYLMEFIPHLLIEGMITSSYALGANLSYIYIRGEYMWVYKILERA 137 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + E A+G LG N GYD+D+ V G GAYICGEETAL+ESLEGK+G PR+KPPFPA Sbjct: 138 IAEAKAAGWLGKNILGTGYDLDLYVQIGGGAYICGEETALIESLEGKRGNPRIKPPFPAV 197 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNNVE+I+ VP I+ + Y+ G + GTKL S SG++ P E M Sbjct: 198 SGLWGNPTVVNNVETISAVPWIVNNSGAKYAEIGIGRSTGTKLISASGNIKKPGVYEIEM 257 Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLK- 309 ++ E + +++ GG+ L A++PGGSSVP LPA + +M Y+ L Sbjct: 258 GLSVYEFMNSDEYLGGMATNRP-LKALVPGGSSVPILPAHLIYKTANNEDRLMSYESLSD 316 Query: 310 ---EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 GS LG+ IV D I++ W S FY HESCGQCTPCREGTGWM +++ R+ Sbjct: 317 GGFPTGSMLGSGGFIVYDDRACIVRNTWNFSRFYHHESCGQCTPCREGTGWMEKILHRIE 376 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 G ++ +IDLL + IEG TIC LGDAAAWP+ I++FR E + Sbjct: 377 NGHGREEDIDLLLSIQSKIEGNTICPLGDAAAWPVAAAIRHFREEFEYHVR 427 >gi|114328597|ref|YP_745754.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) [Granulibacter bethesdensis CGDNIH1] gi|114316771|gb|ABI62831.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) [Granulibacter bethesdensis CGDNIH1] Length = 518 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q R+ G+ +SLSD + G + + + L + ++ +V SGLRGRGGAGF Sbjct: 99 FKKQTRLTFERCGIVDPRSLSDYQAHGGYKGLARALTMTPEAVVEDVTKSGLRGRGGAGF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR IM +P LIEG IA +A+GA Sbjct: 159 PTGIKWKTVLGAKA-AQKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGYAVGATK 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y R E+ +++ A+ +G+LG N G D+ V GAGAY+CGEETALL Sbjct: 218 GYVYTRSEYPHAIDAMNRAIIAAREAGMLGDNILGSGISFDMEVRQGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGK+G R KPP PA GL+G PT +NNV S+ VP I+ G Y+ FG +RGT Sbjct: 278 DSLEGKRGVVRAKPPLPALSGLFGQPTVINNVISLTSVPWIMTHGGEAYAAFGLGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V E + IT EL+++ GG + AV GG P + Sbjct: 338 MPIQIAGNVKQGGLFEIAFGITLGELVDEIGGGT-LTGRPVRAVQIGGPLGAYFPRA-LF 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G +++ D + D+ F ESCG+CTPCR G+ + Sbjct: 396 DTPFDYEAFAAKDGLIGHGGIVIFDDTVDMAHMARFAMEFCAEESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++L++G ++ +L ++ ++ ++CALG +P+ + +F Sbjct: 456 ETLDKLLRGEQHEKNYAVLEDLCNTMKFGSLCALGGFTPYPVVSAMTHFPEDF 508 >gi|313836205|gb|EFS73919.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA2] gi|314927640|gb|EFS91471.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL044PA1] gi|314971361|gb|EFT15459.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA3] gi|328906298|gb|EGG26073.1| NADH dehydrogenase I chain F [Propionibacterium sp. P08] Length = 444 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 193/409 (47%), Positives = 263/409 (64%), Gaps = 6/409 (1%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I + +G + L + +G + + L D +++ V+ + LRGRGGAGF TGMKW Sbjct: 8 ILSANWGDERSWKLLNYERQGGYTGLRHALTMQPDEVVSLVRDANLRGRGGAGFPTGMKW 67 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK + P YLVVN DESEPGTCKD +M PHTL+EG +IAS+AI A AFIY+R Sbjct: 68 SFVPKD-NPNPTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKVAFIYIR 126 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + +Q AV E Y++G +G N GYD+D++VH GAGAYICGEETALL+SLEG+ Sbjct: 127 GEVLHVIRRVQQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGR 186 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLY PT +NNVESI+ VP ILR G W+ G E + G ++S+S Sbjct: 187 RGQPRLRPPFPAVAGLYASPTVINNVESISTVPAILRNGKEWFKSMGTEKSDGFTIYSLS 246 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV +P E M IT +L+ GG+R G + L PGGSS P L + +DY Sbjct: 247 GHVAHPGQYEAPMGITLRQLL-GISGGMRQGHE-LKFFTPGGSSTPILAKDDL-DLPLDY 303 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G+ + LGT A+ D +T +++ R FYKHESCG+CTPCREGT W+++++ R+ Sbjct: 304 EGMAGAKTMLGTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRI 363 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 G Q+ ++D L +++ NI GR+ CAL D A ++G I +FR E Sbjct: 364 EAGEGQEGDVDKLLDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412 >gi|296388898|ref|ZP_06878373.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAb1] gi|313107679|ref|ZP_07793861.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016] gi|310880363|gb|EFQ38957.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016] Length = 448 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 164/409 (40%), Positives = 235/409 (57%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 QPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 90 LNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAR 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY R + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E ++ EL E + GG+R G+ L A PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVSARELFEDYAGGMRDGF-QLKAWQPGGAGTGFLLPEHL-DAQMFAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++ L ++ + G+T CA A P+ +K FR E I + Sbjct: 388 PGDLETLEQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQ 436 >gi|281357444|ref|ZP_06243932.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281316047|gb|EFB00073.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 573 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 149/421 (35%), Positives = 233/421 (55%), Gaps = 12/421 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 ++ + S D ++ + ++K L +++EVK SGLRGRGG GF TG KW Sbjct: 100 KVLALAGRIDPTSFEDYVAHDGYKGLEKALAMTSQQVVDEVKLSGLRGRGGGGFPTGNKW 159 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+ +D L+ NADE +PG DR +M PH ++EG +IA++A GA FIY R Sbjct: 160 GFLAAKQAD-EKILICNADEGDPGAFMDRSLMESAPHQVLEGMLIAAYATGATKLFIYCR 218 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ + L+ A+ + Y L N G +++II+ GAGA++CGEETAL+ SLEG++ Sbjct: 219 AEYPMAIKHLKIAIAQIYEHKL---NVVNGRELEIIIKEGAGAFVCGEETALIASLEGQR 275 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PR +PPFP + G G P+ +NNVE+ VP ILR GA+ ++ G E ++GTKLF+++G Sbjct: 276 GTPRFRPPFPTDKGWMGHPSMINNVETFGNVPLILREGAAAFASVGTEGSKGTKLFALAG 335 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + +P VE M T E++ G + + AV GG S C+P + +DYD Sbjct: 336 DLKHPGLVEVPMGTTLREIVFDIGG---ADPEKVKAVQTGGPSGGCIPVE-LFDTPVDYD 391 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L+++G+ +G+ +IV+ + +++ F ESCG+CT CR GT M +ER+V Sbjct: 392 SLRKLGAIMGSGGMIVIGKDRCMVETARYFLDFTHRESCGKCTFCRVGTTRMYETLERIV 451 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH----RC 422 G ++ LL ++ I ++C LG A P+ ++ +R E + +C Sbjct: 452 AGKGSMEDLALLEDLGPKIRMGSLCGLGQTAPNPVLATLRYYRHEYEAHVRDRQCDALQC 511 Query: 423 N 423 N Sbjct: 512 N 512 >gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 633 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 154/426 (36%), Positives = 231/426 (54%), Gaps = 8/426 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 Q +I N + + + + M+RG + L++ II +K SGLRGRGG Sbjct: 148 FYDRQVKIALRNCGYIDPEKIEEYMARGGYKAFLSALKRNAPQEIIAAIKESGLRGRGGG 207 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + Y++ NADE +PG DR I+ +PHT+IEG +IA AIG+ Sbjct: 208 GFPTGVKWESCAAHQGE--RYIICNADEGDPGAYMDRSILEGDPHTIIEGMLIAGLAIGS 265 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ + L A+ + GLLG + + ++ + GAGA++CGE TA Sbjct: 266 REGFIYVRNEYPLAVKRLVTAIRQATEYGLLGQHIAGSDFSFEMKISTGAGAFVCGESTA 325 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ SLEG+ G+PR K G P+ +NNVE+ A VP IL +GA W++ G ++++ Sbjct: 326 LMASLEGEVGRPRAKYVHTVEKGFRQGPSNLNNVETYANVPVILAKGARWFANLGTDHSK 385 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS+ G + VE M + +I GGI G AV GG S C+P Sbjct: 386 GTKVFSLVGKIKNTGLVEVPMGTSLRNIIFDIGGGIP-GKKAFKAVQTGGPSGGCIPEAY 444 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D++ L ++GS +G+ +IVMD+ T ++ F K ESCGQC PCREG Sbjct: 445 L-DLGVDFNELAKVGSIMGSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKR 503 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++ R+ +G ++ +IDLL E+ + ++C LG +A P+ IK FR E I Sbjct: 504 MLEILTRVCEGDGREGDIDLLQELGDMVRKFSLCGLGTSAPNPVLTTIKYFREEYEAHIR 563 Query: 418 QYHRCN 423 +C Sbjct: 564 D-KKCP 568 >gi|297539618|ref|YP_003675387.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301] gi|297258965|gb|ADI30810.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301] Length = 513 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D ++ + + K L I+ V SGLRGRGGA F Sbjct: 100 LKKQQRLTFARVGITDPVSLDDYIAHDGYKGLKKALTLSGAEIVKAVTDSGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+ + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 160 PTGIKWNTVLGCQAD-QKYIVCNADEGDSGTFSDRMIMEDDPFVLIEGMTIAGVAVGATQ 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++L A+ + A+G LG + ++ V AGAY+CGEET+LL Sbjct: 219 GYIYLRSEYPHALKALNEAIAKAEAAGYLGDKICGSTHTFNLEVRRAAGAYVCGEETSLL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VP IL +GA +Y+ +G +RGT Sbjct: 279 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISLATVPIILDKGAQYYADYGMGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE + IT EL+ + GG G + AV GG LP Q Sbjct: 339 LPIQLAGNLKHGGLVELAFGITLRELLYDYGGGSATG-KPIRAVQVGGPLGAFLPESQ-F 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 397 DTPLDYEAFSNIWAVVGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+++++ G + I L+ ++S + ++CALG +P+ + +F Sbjct: 457 EVIDKIIAGKDTAKNIKLVRDLSDTMLNGSLCALGGMTPYPVLSAMNHFPEDF 509 >gi|28198176|ref|NP_778490.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa Temecula1] gi|182680810|ref|YP_001828970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23] gi|28056246|gb|AAO28139.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa Temecula1] gi|182630920|gb|ACB91696.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23] gi|307579278|gb|ADN63247.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa subsp. fastidiosa GB514] Length = 444 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 206/418 (49%), Positives = 266/418 (63%), Gaps = 8/418 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62 I+T L+ S + G + + KI E+ + +I+ VK S LRGRGGAGF T Sbjct: 18 HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G+KWSFMPK Y++ N+DESEPGTCKDRDI+R+ PH+++EG IA +A G+ A+ Sbjct: 78 GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135 Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 Y+RGEF E E + A+ + Y G LG + G D+DI GAGAYICGEETAL+E Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKSVLGSGVDIDIYAVLGAGAYICGEETALME 195 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G W+ + N G+K Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V E + TFDEL+E G L A IPGG S+P L A Q++G Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLQG 313 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD L+ +GSGLG+ ++V+D S ++ R+S F+ ESCGQCTPCREGTGWM R Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 V+ER+V G A ++ L V+ IEG TICA G+AAAWPIQG ++ F E I Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVH 431 >gi|227535966|ref|ZP_03966015.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|227244209|gb|EEI94224.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] Length = 450 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 201/420 (47%), Positives = 261/420 (62%), Gaps = 18/420 (4%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ G+ + +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ Sbjct: 11 NVPGIH--TFEVYRQQGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFL 68 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 K P YLV N DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE Sbjct: 69 AK-PEGVPRYLVCNGDESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEM 127 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L+ A+ E +G LG N GYD++I V G GAYICGEETALLESLEGK+G Sbjct: 128 MPQIRILEKAIAEAKHAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGN 187 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR+KPPFPA GLYGCPT VNNVESIA I+ G Y+ G + + GTKL S G+V Sbjct: 188 PRIKPPFPAVAGLYGCPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNV 247 Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---- 302 P E + + +E I ++CGGI L AV+ GGSSVP LPA + I Sbjct: 248 AKPGVYEIELGLPVEEFIYSDEYCGGIA-NGKRLKAVVAGGSSVPILPANLITKTINGES 306 Query: 303 --MDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 M Y+ L G+ LG+ I D I++ W + FY HESCGQC+PCREGTG Sbjct: 307 RLMSYESLADGGFATGTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTG 366 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 WM +++ ++ G +IDLL++V + IEG TIC LGDAAAWP+ I++FR E I Sbjct: 367 WMEKILHKIEMGKGSMADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426 >gi|307823547|ref|ZP_07653776.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96] gi|307735532|gb|EFO06380.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96] Length = 517 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q R+ F + SL+D + + + L ++ I+ V SGLRGRGGA F Sbjct: 99 FKKQQRLTFARIGKTDPSSLTDYIDNDGYRGLKNALAMTQEQIVQAVTDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S Y++ NADE + GT DR +M +P LIEG IA A+ A Sbjct: 159 PTGIKWKTVLNTAS-LQKYIICNADEGDSGTFSDRMVMEGDPFVLIEGMTIAGLAVDATQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ E L AA+ Y G LG N G ++ V GAGAY+CGEET+L+ Sbjct: 218 GYIYLRIEYPHAFEVLNAAIATAYQEGYLGENIQGSGKTFNLEVRLGAGAYVCGEETSLM 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A +P IL +G +Y FG +RGT Sbjct: 278 ESLEGKRGLVRFKPPLPAISGLFGQPTVVNNVISLASIPVILNKGGDYYRDFGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ P VE +T EL+ GG G + AV GG LP Q Sbjct: 338 LPVQLAGNIKRPGLVELGFGLTLRELLYDFGGGAASGRP-IRAVQVGGPLGAYLPESQ-F 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G ++V D + ++ + F K ESCG+CTPCR G+ + Sbjct: 396 DTPLDYEAFAAIWAVVGHGGIVVFDDTVNMAEMARYSMEFCKIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM+ ++ G + I LL ++ + ++CALG +P+ + +F Sbjct: 456 EVMDDIINGRNLDKNIPLLRDLCDTLLNGSLCALGGMTPYPVLSALNHFPEDF 508 >gi|171362775|dbj|BAG15851.1| probable NADH-quinone oxidoreductase [Pseudomonas putida] Length = 459 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 165/406 (40%), Positives = 234/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L++ S+ + K L D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLAEYESKNGYAAARKALAQMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M +PH L+EG +I++ A+ A+ +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L KG + Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + GRT CA A P+ IK FR E + Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433 >gi|15597837|ref|NP_251331.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAO1] gi|107102161|ref|ZP_01366079.1| hypothetical protein PaerPA_01003211 [Pseudomonas aeruginosa PACS2] gi|152984500|ref|YP_001347930.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PA7] gi|218891198|ref|YP_002440064.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa LESB58] gi|81540766|sp|Q9I0J7|NUOF_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|9948709|gb|AAG06029.1|AE004692_8 NADH dehydrogenase I chain F [Pseudomonas aeruginosa PAO1] gi|150959658|gb|ABR81683.1| NADH oxidoreductase (quinone), f subunit [Pseudomonas aeruginosa PA7] gi|218771423|emb|CAW27190.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa LESB58] Length = 448 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 164/409 (40%), Positives = 235/409 (57%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 QPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 90 LNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAR 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY R + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E ++ EL E + GG+R G+ L A PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVSARELFEDYAGGMRDGF-QLKAWQPGGAGTGFLLPEHL-DAQMFAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++ L ++ + G+T CA A P+ +K FR E I + Sbjct: 388 PGDLETLEQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQ 436 >gi|163857997|ref|YP_001632295.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella petrii DSM 12804] gi|163261725|emb|CAP44027.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella petrii] Length = 522 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 150/414 (36%), Positives = 225/414 (54%), Gaps = 6/414 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ + + L I++EV ASGLRGRGGA F Sbjct: 101 LKKQQRLTFARVGITDPLSIDDYVAHDGLQGLRRALCLTPQQIVDEVSASGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + ++ Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVLTTPAE-QKYIVCNADEGDSGTYSDRLLMEGDPYVLIEGMAIAGLAVGATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + +L A+ +G LG + G D+ V GAGAYICGEET+LL Sbjct: 220 GYIYVRSEYPQAIATLNEAIARARQAGWLGDDIQGSGRRFDLEVRKGAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA++Y +G ++GT Sbjct: 280 ESLEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLASVPIILARGAAYYRDYGVGRSQGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKHGGLVEAAFGLTLRELLYDFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G ++ D + D+ + F ESCG+CTPCR G + Sbjct: 398 DVPLDYEAYAAISAMVGHGGIVAFDDTVDMARMARYAMEFCAVESCGKCTPCRIGAVRGV 457 Query: 360 RVMERL-VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ +G ++++ LL ++ + G ++CALG +P+ + +F Sbjct: 458 ETLDKIATRGAQHEQQVHLLRDLCDTMLGGSLCALGGMTPYPVLSALNHFPEDF 511 >gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] Length = 635 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 147/425 (34%), Positives = 231/425 (54%), Gaps = 7/425 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + + + + +L + +I E+K SGLRGRGG Sbjct: 149 FYRKQMRIALRNCGFIDPENIEEYIGLNGYRALADSLLNGTPEAVIEEIKRSGLRGRGGG 208 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + +D Y+V NADE +PG DR IM +PH+++E + ++IG+ Sbjct: 209 GFPTGRKWELASRQQAD-TKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMALCGYSIGS 267 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ + L+ A+ + GLLG N G+ DI + +GAGA++CGEETA Sbjct: 268 SKGLVYIRAEYPLAIQRLKTAIAQAREYGLLGDNIFGTGFCFDIEIRYGAGAFVCGEETA 327 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+P LKPPFPA G G PT VNN E++A +P IL RGA W+S G E ++ Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNAETLANIPIILTRGAEWFSTIGTEFSK 387 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G +N +E M T E+I + G G AV GG S CL Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L GS +G+ +IVMD ++ F ESCG+CTPCR G Sbjct: 447 L-DTPIDFDNLLAEGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ ++ +G ++++ L + + I+ +C LG + P+ + NF + + Sbjct: 506 LLEILNKITEGRGSEKDLQTLSTLGQVIKDTALCGLGQTSPNPVLSTLNNFYDEYVKHVR 565 Query: 418 QYHRC 422 + C Sbjct: 566 E-KTC 569 >gi|111022877|ref|YP_705849.1| NADH dehydrogenase subunit F [Rhodococcus jostii RHA1] gi|110822407|gb|ABG97691.1| probable NADH dehydrogenase subunit F [Rhodococcus jostii RHA1] Length = 432 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 204/411 (49%), Positives = 270/411 (65%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I+ VK +GLRGRGGAGF TGMKWSF+P+ + Sbjct: 15 ESWTLDTYRRHDGYEGLQKALRMDPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQGDA- 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD +M PH L+EG +IA++AI A AFIYVRGE + Sbjct: 74 KPHYLVVNADESEPGTCKDMPLMLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRR 133 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQAAV E YA+G LG+N G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 134 LQAAVAEAYAAGYLGTNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 193 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVESIA VP I+ G W+ G E + G L+S+SGHV P Sbjct: 194 FPAVAGLYASPTVVNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTKPGQY 253 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL+E + GG+R G L PGGSS P + +DY+G+ GS Sbjct: 254 EAPLGITLRELLE-YAGGVRAG-HRLKFWTPGGSSTPIFTDEHL-DVALDYEGVGAAGSM 310 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G + Sbjct: 311 LGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDAD 370 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++ L +++ NI G++ CALGD AA PI IK FR +Q C F Sbjct: 371 LEKLLDIADNILGKSFCALGDGAASPIMSSIKYFRDEYLAHFEQGG-CPFD 420 >gi|253997399|ref|YP_003049463.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8] gi|253984078|gb|ACT48936.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8] Length = 517 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SL D ++ + + L+ I+ V SGLRGRGGA F Sbjct: 99 LKKQQRLTFARVGVINPVSLDDYIAHDGYQGLKNALKLSGADIVKAVTDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+ + S+ Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 159 PTGIKWNTVLGCESE-QKYVVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAGVAVGATQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +L A++ +G LG N G + V AGAY+CGEET+LL Sbjct: 218 GYIYLRSEYPHALVTLNQAIEVANKAGYLGDNLLGSGKAFHLEVRRAAGAYVCGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VP IL +GA +Y+ +G +RGT Sbjct: 278 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISLASVPIILDKGAQYYADYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE + T EL+ GG + AV GG LP Q Sbjct: 338 LPIQLAGNLKHNGLVELAFGATLRELLYDFGGG-AASGKPIRAVQVGGPLGAYLPESQ-F 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + LG ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 396 DTPLDYEAFAKIWAVLGHGGIVAFDDTVDMSKMARYAFEFCAVESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++++ G + I L+ ++S + ++CALG +P+ + +F Sbjct: 456 EVIDKIRSGKDHAKNIQLVRDLSDTMLNGSLCALGGMTPYPVLSALNHFPQDF 508 >gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 623 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 148/431 (34%), Positives = 235/431 (54%), Gaps = 11/431 (2%) Query: 1 MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ + +++ + +S G + +K E I + V A+GLRGRGG Sbjct: 132 FYKKQHRVVIKQCGVMDPENIKEYISIGGYRAAEKACAEMTDKEICDVVLAAGLRGRGGG 191 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G KW+ + Y++ N DE +PG DR +M PH +IEG VIA+ A GA Sbjct: 192 GFPVGKKWNLARNQTA-SKKYIICNGDEGDPGAFMDRSVMEGNPHGIIEGLVIAAKATGA 250 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + ++ AV + +LG N G++ + V GAGA++CGEE A Sbjct: 251 DEGYVYVRTEYALAVKRMKKAVKDASDIKVLGKNIFGSGHNFTLHVMEGAGAFVCGEEIA 310 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G P KPPFPA GL+G PTT+NNVE++A +P I+ GA + G ++ Sbjct: 311 LIASVEGKRGMPLPKPPFPAQSGLWGKPTTINNVETLATIPMIINYGADVFRETGTVSSP 370 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD-----NLLAVIPGGSSVPC 292 GTK F+++GHV +E + T ++I GG+ G N AV GG S C Sbjct: 371 GTKTFALTGHVLNTGLIEVPLGSTLRQIIFDISGGVTDGKGSVKDGNFKAVQIGGPSGGC 430 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 L + +D+D LK++G+ +G+ ++VM++S ++ F ++ESCG+C CR Sbjct: 431 LTEEHL-DLSLDFDSLKKVGAMVGSGGLVVMNKSICMVNIAKFFMQFTQNESCGKCVLCR 489 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGT M+ ++ + +G A + I LL E+++ ++ ++C LG A P+ +K FR Sbjct: 490 EGTKQMLLMLSDITEGKADEDTISLLEELARAVQIGSLCGLGKTAPNPVLSTLKYFRNEY 549 Query: 413 EERIDQYHRCN 423 + + + RC Sbjct: 550 DAHVKE-KRCP 559 >gi|257485443|ref|ZP_05639484.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987946|gb|EGH86049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans str. M301315] Length = 452 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 164/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQAKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAR 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + KG Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|320160244|ref|YP_004173468.1| NADH-quinone oxidoreductase subunit F [Anaerolinea thermophila UNI-1] gi|319994097|dbj|BAJ62868.1| NADH-quinone oxidoreductase chain F [Anaerolinea thermophila UNI-1] Length = 426 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 189/403 (46%), Positives = 255/403 (63%), Gaps = 5/403 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + G ++ K++ ++NEVK SGLRGRGGAGF TG+KWSF+P PH Sbjct: 18 LDVYLKHGGFEAAKKVITQMQPADVVNEVKTSGLRGRGGAGFPTGVKWSFLPNNI--WPH 75 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADESEPGT KDR+I+ P L+EG +IAS+A+ A+ A+IY+RGEF + L Sbjct: 76 YVVCNADESEPGTFKDREILESNPFQLLEGLMIASYAVQANRAYIYLRGEFWQIARKLDE 135 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + E +GLLG + Y + I H GAGAYICGEETALLESLEGK GQPRL+PPFPA Sbjct: 136 KIAELEKAGLLGDHLFGTNYSLRIYTHLGAGAYICGEETALLESLEGKIGQPRLRPPFPA 195 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLYG PT +NNVE++ +P IL +GA WY FG E + G K+FS+SG+VN P E Sbjct: 196 VYGLYGKPTVINNVETLTNLPPILEKGAQWYRSFGTEKSPGVKIFSLSGNVNRPGNYELP 255 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316 + TF ELI H GGI G + G SS + + MDY+ + +GS LG Sbjct: 256 LGTTFRELIYTHGGGIPEGRKVKAILPAGASSAIIAVNDDAILDTPMDYESVAAIGSQLG 315 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +A+VIV D + ++ + + F+KHESCG+CTPCREGT WM R+ +R++ G A + ++D Sbjct: 316 SASVIVADETVNMAWLVSKTVNFFKHESCGKCTPCREGTFWMNRITQRMMAGRAVESDVD 375 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 LL V+ I G+ +CALG+ + +Q I+ FR E++ Q Sbjct: 376 LLANVANQIAGKCLCALGEFSVMAVQTGIRQFRTDFLEQVKQQ 418 >gi|300771672|ref|ZP_07081547.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33861] gi|300761661|gb|EFK58482.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33861] Length = 450 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 201/420 (47%), Positives = 261/420 (62%), Gaps = 18/420 (4%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N+ G+ + +G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ Sbjct: 11 NVPGIH--TFEVYRQQGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFL 68 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 K P YLV N DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE Sbjct: 69 AK-PEGVPRYLVCNGDESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEM 127 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L+ A+ E +G LG N GYD++I V G GAYICGEETALLESLEGK+G Sbjct: 128 MPQIRILEKAIAEAKHAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGN 187 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR+KPPFPA GLYGCPT VNNVESIA I+ G Y+ G + + GTKL S G+V Sbjct: 188 PRIKPPFPAVAGLYGCPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNV 247 Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---- 302 P E + + +E I ++CGGI L AV+ GGSSVP LPA + I Sbjct: 248 AKPGVYEIELGLPVEEFIYSDEYCGGIA-NGKRLKAVVAGGSSVPILPANLITKTINGES 306 Query: 303 --MDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 M Y+ L G+ LG+ I D I++ W + FY HESCGQC+PCREGTG Sbjct: 307 RLMSYESLADGGFATGTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTG 366 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 WM +++ ++ G +IDLL++V + IEG TIC LGDAAAWP+ I++FR E I Sbjct: 367 WMEKILHKIEIGKGSMADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426 >gi|255318320|ref|ZP_05359555.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82] gi|262379064|ref|ZP_06072220.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter radioresistens SH164] gi|255304632|gb|EET83814.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82] gi|262298521|gb|EEY86434.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter radioresistens SH164] Length = 442 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 162/403 (40%), Positives = 231/403 (57%), Gaps = 6/403 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + ++ K L ++ VKA+ ++GRGGAGF G+KWS M + P YL Sbjct: 33 DDYETLEGYEGFKKALGMPPKDVLEIVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 93 ICNADEMEPGTFKDRLLMERLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 153 EQIRAKGYLGENILDTGWNFEMYVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 272 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE+H GG+R G L A +PGG+S L A + MD D + + GS LGT Sbjct: 273 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLTADHI-DLPMDSDSIMKAGSRLGT 330 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V D + ++ A L F+ ESCG CTPCR+G W ++ + + G + +I Sbjct: 331 CLLMVFDENQCMVSATRNLEEFFARESCGWCTPCRDGLPWSVKALRSIENGEGKMEDIQH 390 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 L E++K + G+T CA A P+Q +K +R E +I + Sbjct: 391 LQELTKKLWIGKTFCAHAPGAMEPLQSALKYWRHEFEAKIKDH 433 >gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta subunit [Herbaspirillum seropedicae SmR1] gi|300073592|gb|ADJ62991.1| NAD-dependent formate dehydrogenase beta subunit protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 154/414 (37%), Positives = 228/414 (55%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q+R+ F + + SL D ++ + + L K + I+ E+ ASGLRGRGGA Sbjct: 102 FLKNQERLTFARVGIIDPLSLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAA 161 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + S Y+V NADE + GT DR IM +P TLIEG IA A+GA Sbjct: 162 FPTGIKWQTVLRAQS-AQKYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGAT 220 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IYVR E+ +L+ A+ +A G LG + G + V GAGAYICGEETA+ Sbjct: 221 EGYIYVRSEYPHSIATLEQAIAIAHAQGYLGDDILGSGKSFRLEVRKGAGAYICGEETAM 280 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NN+ S+A VP IL RGA +Y FG + G Sbjct: 281 LESLEGKRGVVRAKPPLPAIEGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHG 340 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T +L+E GG G + AV GG LP Q Sbjct: 341 TLPFQLAGNIRQGGLVEKAFGLTLRQLLEDFGGGSASGRP-IRAVQMGGPLGAYLPQSQ- 398 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ +G+ +G ++ D S D+ + F ESCG+CTPCR G+ Sbjct: 399 FDTPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRG 458 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V+++++ + ++I LL + + ++CA+G +P+ + +F Sbjct: 459 VEVIDKIIANDDRAQQIHLLKSLCDTMVNGSLCAMGGMTPFPVLSALNHFPEDF 512 >gi|254481135|ref|ZP_05094381.1| NADH oxidoreductase (quinone), F subunit [marine gamma proteobacterium HTCC2148] gi|41582334|gb|AAS07948.1| NADH-quinone oxidoreductase, F subunit [uncultured marine bacterium 463] gi|214038930|gb|EEB79591.1| NADH oxidoreductase (quinone), F subunit [marine gamma proteobacterium HTCC2148] Length = 431 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 163/414 (39%), Positives = 233/414 (56%), Gaps = 9/414 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--KV 72 + ++ + G + + L + + + +K S LRGRGGAGF TGMKWSF+P Sbjct: 15 RRPTDMAAYEANGGYQGLRAALAQSPEDCLQVLKDSNLRGRGGAGFPTGMKWSFVPMGDK 74 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 CS YL+ NADE EPGT KDR ++ +PH LIEG +++++ + A A+I++R E+ + Sbjct: 75 CSPGHKYLICNADEMEPGTFKDRLLLECDPHQLIEGMIVSAYTLQADVAYIFIRAEYHQA 134 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 LQ A+ C+ G LG + GY +++ VH AG YICGEETAL+ SLEGK+ PR Sbjct: 135 TRLLQEAIAACHEKGYLGQDILGTGYQLEMHVHSSAGRYICGEETALISSLEGKRANPRA 194 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 KPPFP GL+G PT VNNVE++ V I+ RGA W+ G + GTKL+ +SG V P Sbjct: 195 KPPFPQVSGLWGRPTIVNNVETLCNVHHIIERGAEWFKSLGLTEDAGTKLYGVSGRVKNP 254 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M ++IE++ GG+ G+ NL +PGG S L + MDYD + + Sbjct: 255 GCWELPMGTPVRQIIEEYAGGMEDGY-NLKGFLPGGGSTDFLTEEHL-DLAMDYDTIGKA 312 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS +GT +I++D T + + L F+ ESCG CTPCR+G W +V++ + G Q Sbjct: 313 GSRMGTGTMIILDDKTCPVGFVKNLVAFFARESCGFCTPCRDGLPWSAQVLDDIQNGRGQ 372 Query: 372 KREIDLLYEVSKNIE--GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + ++D L K I G T CAL A P+Q +K F E + C Sbjct: 373 EEDMDTLARQVKFIGAIGNTHCALAPGAMEPLQSAMKYFPEAFENHLSGN--CP 424 >gi|327403949|ref|YP_004344787.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823] gi|327319457|gb|AEA43949.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823] Length = 447 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 200/415 (48%), Positives = 263/415 (63%), Gaps = 16/415 (3%) Query: 18 KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +S G + +V+K L+ ++ EV+ASGLRGRGGAGF TGMKWSF+ K Sbjct: 16 ESFEVYRKNGGYRSVEKALKTMSPQNVVEEVQASGLRGRGGAGFPTGMKWSFLAK-PEGV 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL+ NADESEPGT KDR +M PH L+EG +++S+A+G + ++IY+RGE++ E + Sbjct: 75 PRYLLCNADESEPGTFKDRYLMEKIPHLLVEGMIVSSYALGCNQSYIYIRGEYMWVLEIV 134 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ E YA+G LG N GYD+D+ + G GAYICGEETAL+ESLEGK+G PR+KPPF Sbjct: 135 EKAIAEAYANGFLGKNILGSGYDLDLAIAPGGGAYICGEETALIESLEGKRGNPRIKPPF 194 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+GCPT VNNVESIA V I+ G + Y+ G + GTKL S G++ P E Sbjct: 195 PAVKGLWGCPTVVNNVESIAAVVPIVNDGGAEYAKIGIGKSTGTKLISACGNLVKPGVYE 254 Query: 256 ESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDG 307 + +T +E I + CGGI + A +PGGSSVP LPA + +M Y+G Sbjct: 255 IELGMTVEEFIYSDEWCGGIA-NGKKIKACVPGGSSVPILPANLITKTAEGVDRLMSYEG 313 Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 L GS LG+ IV D I++ W + FY HESCGQC+PCREGTGWM +V+ Sbjct: 314 LAEGGFATGSMLGSGGFIVFDEDQCIVRNTWNFARFYAHESCGQCSPCREGTGWMEKVLR 373 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RL G +IDLL E++K IEG TIC LGDAAAWP+ I++FR E + Sbjct: 374 RLENGQGHMHDIDLLAEINKKIEGNTICPLGDAAAWPVAAAIRHFREEFEWHVTH 428 >gi|288917188|ref|ZP_06411557.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f] gi|288351379|gb|EFC85587.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f] Length = 445 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 198/407 (48%), Positives = 267/407 (65%), Gaps = 6/407 (1%) Query: 8 IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T + + + +L+ + + + L + D +I VK SGLRGRGGAGF TGMKW Sbjct: 6 VLTRRWNVPESWTLATYERLDGYQGLRRALAQAPDDLIKLVKDSGLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+P+ +PHYLV+NADE EPGTCKD +M+ +PH+LIEG VIA++A+ A+ AFIY+R Sbjct: 66 GFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE I L+AAV E Y +G LG + G+D++++VH GAGAYICGEETALL+SLEG+ Sbjct: 125 GELIHAARRLRAAVAEAYEAGYLGRDILGSGFDLELVVHSGAGAYICGEETALLDSLEGR 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLY PT VNNVE+IA VP I+ G W+ GRE G K++S+S Sbjct: 185 RGQPRLRPPFPATHGLYASPTVVNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M T EL+E G + L A PGGSS P L A + +D+ Sbjct: 245 GHVTRPGQYEAPMGTTLRELLEMAGGVLG--GRKLKAWTPGGSSTPLLTADHL-DVPLDF 301 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G++E GS LGTAA+++MD + D++ + RL+ FY HESCG+CTPCREGT WM++++ R+ Sbjct: 302 EGVQEAGSLLGTAALMIMDETVDMLPVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRM 361 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +G ++D L + NI GR CAL D A PI IK+FR Sbjct: 362 ERGHGDSDDVDTLVDACDNIFGRAFCALADGATSPIVSGIKHFRNEF 408 >gi|332981956|ref|YP_004463397.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON] gi|332699634|gb|AEE96575.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON] Length = 434 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 155/419 (36%), Positives = 238/419 (56%), Gaps = 7/419 (1%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMK 65 R+ + +S+ +S G + + K L II+EVKASGL GRGGA F TG+K Sbjct: 8 RLTQRCGNIDPSDISEYISTGGYKALVKALLTMKPQDIIDEVKASGLLGRGGAAFPTGLK 67 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 + D Y+V NADE EPGT KDR +M +P+ L+EG ++A +A+GA +IY+ Sbjct: 68 MQMVHDTPGD-VKYVVCNADEGEPGTFKDRYLMEGDPYQLVEGIILAGYAVGAQKGYIYI 126 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE+ + E ++ AV++ G LG N K ++ DI V GAGAYICGEE AL+ESLEG Sbjct: 127 RGEYDQAIELMKNAVEQTRKIGYLGDNILKQRFNFDIEVRSGAGAYICGEEFALIESLEG 186 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K G+PR KPP+P GL+ PT +NNVE++ +P I+ G+ + G +++ GTKL + Sbjct: 187 KSGRPRYKPPYPPISGLWDRPTLINNVETLVNIPYIVSNGSKAFRSAGTDSSAGTKLICL 246 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG++ E IT ++I G+ + L + GG+S C+P+ M +D Sbjct: 247 SGNIVNRGVFEVPFGITLKDIIHDIGQGVPDERE-LKMIQIGGASGSCIPSD-MLDVKLD 304 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 + +++ G +G+ A+I D S +I + L F+ HESCG+CTPCREG + +++ Sbjct: 305 FADMRKNGLSMGSGAIIAFDDSRCVIDIVKSLLKFFAHESCGKCTPCREGNPQLYNLIDD 364 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 KG A D+L +++ ++ +C LG A+ PI ++ F+ + I+ RC Sbjct: 365 FSKGSATPSHYDVLQSLTQTMQQAALCGLGQASPMPIVSTLQYFKDEYDMHIN--GRCP 421 >gi|313206211|ref|YP_004045388.1| NADH dehydrogenase subunit f [Riemerella anatipestifer DSM 15868] gi|312445527|gb|ADQ81882.1| NADH dehydrogenase subunit F [Riemerella anatipestifer DSM 15868] gi|315023104|gb|EFT36117.1| NADH-ubiquinone oxidoreductase chain F [Riemerella anatipestifer RA-YM] gi|325336342|gb|ADZ12616.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Riemerella anatipestifer RA-GD] Length = 453 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 197/411 (47%), Positives = 265/411 (64%), Gaps = 15/411 (3%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 +G + +K L+ + I+ EVK SGLRGRGGAGF TG+KWSF+ K P +L Sbjct: 19 DVYRKQGGYQAAEKALKMNPEEILEEVKTSGLRGRGGAGFPTGLKWSFLAK-PEGVPRHL 77 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 VVNADESEPGT KDR +M PH LIEG +I+S+ +G++ ++IY+RGE+ + L+ A+ Sbjct: 78 VVNADESEPGTFKDRYLMEFIPHLLIEGMLISSYCLGSNASYIYIRGEYSWIPDILEEAI 137 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 +E +G LG N G+D++I V G GAYICGEETALLESLEG++G PRLKPPFPA Sbjct: 138 EEAKKAGFLGKNILGSGFDLEIYVQRGGGAYICGEETALLESLEGRRGNPRLKPPFPAVK 197 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+ PT VNNVESIA V I+ + Y+ G + GTKL S G++N P E M+ Sbjct: 198 GLWERPTVVNNVESIAAVVPIINISGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMT 257 Query: 260 ITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLK-- 309 IT +E I ++CGGI G L A IPGGSSVP +PA + I M+Y+ L Sbjct: 258 ITVEEFIYSDEYCGGIPNG-KRLKACIPGGSSVPIVPANLLLRTIDGKPRYMNYESLSEG 316 Query: 310 --EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 G+ +G+ IV+D ++K L+ FY HESCGQCTPCREGTGWM R+++++V+ Sbjct: 317 GFATGTMMGSGGFIVLDEDQSVVKHTMTLARFYNHESCGQCTPCREGTGWMYRILKKIVE 376 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E + Sbjct: 377 GKGEMSDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWYVKN 427 >gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 614 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 227/422 (53%), Gaps = 7/422 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62 Q RI N L +++ + ++ + + K + +I+ + ASGLRGRGG GF T Sbjct: 133 QARIVLRNTGRLNPENIEEYLADDGYAALAKAVTQMTPQQVIDLITASGLRGRGGGGFPT 192 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 G KW F S+ +++ NADE +PG DR ++ +PHT++E I +AIGAH Sbjct: 193 GRKWQFAADQKSE-EKFIICNADEGDPGAFMDRAVLEGDPHTVLEAMAIGGYAIGAHTGV 251 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 IY+R E+ L+ A+ + GLLG N G+D I + +GAGA++CGEETAL+ S Sbjct: 252 IYIRAEYPLAVRRLEIAIRQAEELGLLGRNIFDSGFDFRIEIKYGAGAFVCGEETALIHS 311 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EGK+G+P +KPPFPA GL+ PT VNNVE+ A V I+R+GA W+ G + GTK+ Sbjct: 312 IEGKRGEPTVKPPFPAVEGLWKKPTVVNNVETYACVGAIVRKGAEWFRSLGTAGSPGTKV 371 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F+++G V VE M T +++ GGI+ AV GG S C+ + Sbjct: 372 FALAGKVAKVGLVEVPMGTTLRDIVFGIGGGIK-NGRAFKAVQTGGPSGGCITPANL-DL 429 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +DY+ LK +GS +G+ +IVMD ++ F ESCG+CTPCR G M + Sbjct: 430 PIDYEALKSIGSMMGSGGMIVMDEDDCMVNIAKFFLEFTLDESCGKCTPCRIGNRRMYEM 489 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + + +G A ID L +S I+ +C LG + P+ + NF + R Sbjct: 490 LNEITEGRASLDVIDRLKTLSATIKDTALCGLGQTSPNPVLSTLANFEDEYLAHVKD-SR 548 Query: 422 CN 423 C Sbjct: 549 CP 550 >gi|256425963|ref|YP_003126616.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] gi|256040871|gb|ACU64415.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] Length = 454 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 197/412 (47%), Positives = 260/412 (63%), Gaps = 16/412 (3%) Query: 21 SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + G + + +K L+ D +++EVK SGLRGRGGAGF TGMKWSF+ K P Y Sbjct: 19 DVYRANGGYGSAEKALKSMSPDQVLDEVKKSGLRGRGGAGFPTGMKWSFIAK-PEGVPRY 77 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 LV NADESEPGT KDR +M PH LIEG +I+S+ +G + +IY+RGE+ + L+ A Sbjct: 78 LVCNADESEPGTFKDRYLMEFLPHLLIEGLLISSYTLGCNSCYIYIRGEYAWIPDILEEA 137 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + +G LG N G+D++I V GAGAYICGEETAL+ESLEGK+G PR+KPPFPA Sbjct: 138 IADAKKNGWLGKNIQGTGFDLEIYVQRGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+ CPT VNNVE++A V ILR G Y+ +G + GTKL S G++N P E M Sbjct: 198 KGLWDCPTVVNNVETLATVVPILRIGGEEYAKYGTGKSTGTKLISACGNINKPGVYEIEM 257 Query: 259 SITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLK- 309 +I+ +E I ++CGGI L A IPGGSSVP LPA + +M Y+ L Sbjct: 258 NISVEEFIYSDEYCGGIA-NGKRLKACIPGGSSVPILPANLLLKTAKGEPRMMTYESLAD 316 Query: 310 ---EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G+ LG+ IV+D I+K + FY HESCGQC+PCREGTGWM RV+ + Sbjct: 317 GGFATGTMLGSGGFIVLDEDQCIVKNTLTFARFYHHESCGQCSPCREGTGWMKRVLLNIE 376 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E + Sbjct: 377 NGKGKMSDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHVLH 428 >gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] Length = 594 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 150/422 (35%), Positives = 233/422 (55%), Gaps = 6/422 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61 + R N + +++ D + + ++K+L+ +I E+ ASGLRGRGG GF Sbjct: 112 KQERRALKNCGVIDPENIDDFLKNDGYKGIEKVLKTMSNRDVIKEIFASGLRGRGGGGFL 171 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW + ++ Y+V NADE +PG DR I+ +PH++IEG +IA +AIGA Sbjct: 172 TGIKWEIASNIEAE-QKYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKG 230 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ L A++ G LG N ++ DI + GAGA++CGEETAL+ Sbjct: 231 LVYIRAEYPLAIHRLSVAIESARKKGFLGKNILGSDFEFDIELKFGAGAFVCGEETALIH 290 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++G+P KPP+PA G + PT VNNVE++ VP IL G W+ G E + GTK Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWNKPTVVNNVETLVNVPGILLHGKEWFREVGTEKSPGTK 350 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F+++G +N VE M IT E+I + GGI+ AV GG S CL + Sbjct: 351 VFALAGKINNVGLVEVPMGITLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDL-D 408 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D L + GS +G+ ++VMD ++ F ESCG+CTPCR G + Sbjct: 409 TPIDFDTLSKKGSIMGSGGMVVMDEDDCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLYE 468 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++++ +G ++ LL E+S+ I+ ++C LG +A P+ + F E + Sbjct: 469 MLDKITQGRGTLEDLQLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVD-K 527 Query: 421 RC 422 RC Sbjct: 528 RC 529 >gi|297625733|ref|YP_003687496.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921498|emb|CBL56052.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 446 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 193/401 (48%), Positives = 249/401 (62%), Gaps = 6/401 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 L + G +D K L +I+ VKASGLRGRGGAGF TGMKWSF+P+ + Sbjct: 17 DSWKLDTYVRGGGYDAARKALTTMKSPEVIDLVKASGLRGRGGAGFPTGMKWSFIPQD-N 75 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 +P YLVVN DESEPGTCKD ++ PHTL+EG +IA +A+ AH AFI+ RGE + Sbjct: 76 PKPKYLVVNCDESEPGTCKDMPMLIATPHTLLEGIIIACYAVNAHHAFIFCRGEVLHAIR 135 Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E Y G LG + GYD+DI+VH GAGAYICGEETALL +LEG +GQPRL+P Sbjct: 136 RLSQAVREAYDKGYLGKDLFGTGYDLDIVVHSGAGAYICGEETALLSALEGHRGQPRLRP 195 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA GLY CPT VNN ESIA VP I+R GA WY G E ++G ++S+SGHV P Sbjct: 196 PFPAVEGLYACPTVVNNAESIASVPAIVRNGAEWYQSMGTEKSKGATIYSLSGHVKRPGQ 255 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + ITF +++E GG L PGGSS P Q+ +DY+G+ GS Sbjct: 256 FEAPLGITFRQILEL--GGGVRDGHQLKFFTPGGSSTPMFTPEQL-DVPLDYEGVSAAGS 312 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT A+ V D +T +++ R + FYKHESCG+CTPCREG+ W+++ + L G Q+ Sbjct: 313 ILGTKALQVFDETTSVVRTTLRWTEFYKHESCGKCTPCREGSWWLVQTLRNLEAGKGQEG 372 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++D L +V N+ ++ C L D I IK+FR E Sbjct: 373 DVDKLLDVCDNVSMKSFCTLADGFVACITSAIKHFRSEFEA 413 >gi|284009324|emb|CBA76486.1| NADH-quinone oxidoreductase chain F [Arsenophonus nasoniae] Length = 404 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 170/391 (43%), Positives = 237/391 (60%), Gaps = 6/391 (1%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 D +++ VK +GL+GRGGAGFSTG+KWS MPK S YL+ NADE EPGT KDR + Sbjct: 1 MSPDQVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLL 60 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 M PH LIEG +I ++A+ A+ +I++RGE+I + L+ A++E A+GLLG N G Sbjct: 61 MEQLPHLLIEGMLIGAYALKAYRGYIFLRGEYIEAAKHLRKAIEEAKAAGLLGKNILATG 120 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 ++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ Sbjct: 121 FNFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCN 180 Query: 217 VPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 VP I+ G WY G G+ + GTKL SG VN P E IT E++E + GG+R Sbjct: 181 VPAIIAHGKEWYLGLSEGKSKDAGTKLMGFSGRVNNPGLWELPFGITAREILEDYAGGMR 240 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G L A PGG+ L + MD+D + + GS LGTA + +D +++ Sbjct: 241 EGL-TLKAWQPGGAGTDFLTEAHL-DLAMDFDSIAKAGSRLGTALAMAVDHKINMVSLTR 298 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393 L F+ ESCG CTPCR+G W +++++ L +G Q +I+ L ++ + + G+T CA Sbjct: 299 NLEQFFARESCGWCTPCRDGLPWSVKILQALERGEGQPGDIETLEQLCRFLGPGKTFCAH 358 Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 A P+Q IK FR E I Q + N Sbjct: 359 APGAVEPLQSAIKYFRAEFEAGISQQNLANL 389 >gi|169832066|ref|YP_001718048.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169638910|gb|ACA60416.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 539 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 143/427 (33%), Positives = 234/427 (54%), Gaps = 8/427 (1%) Query: 1 MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGG 57 Q R+ N + + +++ ++R + + ++L G +++ V+ SGLRGRGG Sbjct: 108 FFEKQQRVVLDNSGLIDPEDINEYIARDGYFALAEVLRSRAGPADVVDAVRRSGLRGRGG 167 Query: 58 AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 AGF TG KW F Y++ NADE +PG DR I+ PH ++EG +IA +A+G Sbjct: 168 AGFPTGEKW-FFAAAQEGPEKYIICNADEGDPGAFMDRSILEGNPHAVLEGMLIAGYAVG 226 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEET 176 A ++YVR E+ + L+ A+ + GLLG +D D+ + GAGA++CGEET Sbjct: 227 AQEGYVYVRAEYPLAVKRLEIAIRQAQKLGLLGKGILGSDFDFDVDIALGAGAFVCGEET 286 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S G +G+PR++PP+P GLY PT +NNVE++A VP I+R G W++ G E + Sbjct: 287 ALLRSAMGFRGEPRVRPPYPVEKGLYDKPTIINNVETLANVPAIIRNGPEWFAAMGTEGS 346 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 +GTK+FS++G + +E M I+ +++ G + AV GG S +PA Sbjct: 347 KGTKIFSLAGQIKNTGLIEVPMGISLADIVYDIGAGPP-PGRRIKAVQTGGPSGGAVPAE 405 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ L+ +G+ +G+ +IV+D + ++ F HESCG CT CR G Sbjct: 406 -LLDVPVDYESLQAVGTIMGSGGLIVLDNTDCMVDLAKFYMQFAAHESCGACTLCRVGVV 464 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ ++ER+ +G ++ L E++ ++ ++C LG AA P+ +K F + Sbjct: 465 HVVDILERITQGEGTLDDLQELEELAYDVRDASLCGLGQTAANPVLSTMKYFWDEYLAHV 524 Query: 417 DQYHRCN 423 RC Sbjct: 525 RD-RRCP 530 >gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] Length = 624 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 151/424 (35%), Positives = 234/424 (55%), Gaps = 6/424 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59 Q RI + +S+ + M+ G + + K L + +I EV+ SGLRGRGG G Sbjct: 137 FARQTRIVLEQCGNIDAESVEEYMAAGGFSALKKALFAMTPEAVIAEVEFSGLRGRGGGG 196 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G KW + + Y+V N DE +PG D +M +P LIEG ++A +A+GA Sbjct: 197 FPAGRKWRQVAAHKEEPLKYIVCNGDEGDPGAFMDGSVMEGDPCRLIEGMMLAGYAVGAS 256 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 FIYVR E+ L+ A+ + GLLG + G+ + ++ GAGA++CGE +AL Sbjct: 257 EGFIYVRAEYPLSVARLRQAIGQMEERGLLGDSILGTGFSFHLHINRGAGAFVCGEGSAL 316 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 S+EG +G PR+KPP + GL+G PT +NNVE+ A +P I+ G W+ G EN+ G Sbjct: 317 TASIEGHRGMPRVKPPRTVDQGLWGKPTVLNNVETYANLPGIIVNGGKWFRTIGTENSTG 376 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK FS++G + VE M T +I CGG++ G + AV GG S CL + Sbjct: 377 TKTFSVTGCIENTGLVEVPMGTTLRTIIYDICGGLKEGSE-FKAVQIGGPSGGCLTEEHL 435 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D +++ +G+ ++VMD+ T +++ F + ESCG+C PCREGT M Sbjct: 436 -DEPLDFDSVQKFNVIIGSGGLVVMDKHTCMVEVARFFMNFTQRESCGKCVPCREGTKRM 494 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ER+V+G + +I+ L +++ I +C LG +A P+ IK FR E I++ Sbjct: 495 LEILERIVEGKGEPDDIERLEQLADMISNTALCGLGKSAPLPVISTIKAFRKEYLEHINE 554 Query: 419 YHRC 422 +C Sbjct: 555 -KKC 557 >gi|313200988|ref|YP_004039646.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688] gi|312440304|gb|ADQ84410.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688] Length = 516 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL+D ++ + + L I+ +V SGLRGRGGA F Sbjct: 98 LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA+ A+GA Sbjct: 158 PTGIKWKTVHDCKAD-QKYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L A+ LG N G+ ++ V AGAY+CGEET+LL Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S A VP IL +G ++Y +G +RGT Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T +L+ GG G + AV GG LP Q Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + LG ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 395 DTPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM+++++G + I L+ ++S + ++CALG +P+ I +F Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHFPEDF 507 >gi|330981367|gb|EGH79470.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 452 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|108744329|gb|ABG02414.1| FdsB [Xanthobacter flavus] Length = 520 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 151/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SL+D + G + +++ + G + EV SGLRGRGGAGF Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 160 PTGIKWRTVAAAPAD-QRYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATR 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y R E+ ++ A+++ +GLLG + G D+ + GAGAY+CGEETALL Sbjct: 219 GYVYCRSEYPLAFVVMEKAIEKARMAGLLGDDILGSGLAFDMEMRMGAGAYVCGEETALL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT +NN+ S+A VP IL +G +Y FG +RGT Sbjct: 279 ESLEGKRGLVRAKPPLPAHKGLFGKPTVINNLVSLATVPIILDKGGKYYRDFGMGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V Y E + I EL+ GG G + AV GG LP Q Sbjct: 339 MPIQIAGNVRYGGLFETAFGIPLGELVNDIGGGTASGRP-VKAVQAGGPLGAYLPVHQ-F 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + +G ++V D + D+ F HESCG+CTPCR G+ + Sbjct: 397 DTPFDYEAFAAKDALIGHGGLVVFDDTADMADMAKFAMEFCAHESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +E+++ G + + LL ++ ++ ++CALG +P+ + +F Sbjct: 457 ETLEKVIAGERRDENLALLEDLCHTMKLGSLCALGGFTPYPVVSALTHFPEDF 509 >gi|145298719|ref|YP_001141560.1| NADH dehydrogenase I subunit F [Aeromonas salmonicida subsp. salmonicida A449] gi|142851491|gb|ABO89812.1| NADH dehydrogenase I, F subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 461 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 166/407 (40%), Positives = 235/407 (57%), Gaps = 7/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ +D K L + D I+ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 36 QPVWLDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFPTGVKWGLMPKDES 95 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ Sbjct: 96 MNIRYLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAI 155 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 156 HLRRAVIEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 215 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA G++G PT VNNVE++ VP I+ G +WY G + GTKL SG VN P Sbjct: 216 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNP 275 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT EL E + GG++ G+ L A PGG+ L + A M G+ ++ Sbjct: 276 GVWELPFGITARELFEHYAGGMKPGY-RLKAWQPGGAGTGFLLPEHL-DAQMYTAGIGKV 333 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 334 GTRMGTGLAMAVDDSVNMVGLLRNMEEFFARESCGWCTPCRDGLPWNVKLLRALERGEGQ 393 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ L ++ + G+T CA A P+ +K FR E I Sbjct: 394 QGDLATLEQLCNFLGPGKTFCAHAPGAVEPLASALKYFRSEFEAGIK 440 >gi|302185027|ref|ZP_07261700.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae 642] Length = 452 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 607 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 241/423 (56%), Gaps = 6/423 (1%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61 R+ N+ + S+ + G ++ K + + +I VK SGLRGRGGAGF Sbjct: 178 QQTRRLLENVGKVDPASIESYLQNGGYEAARKAFAEYSPEQVIGIVKDSGLRGRGGAGFP 237 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KWSF+PK + Y++ NADE EPGT KDR +M P LIEG ++ +AIGA Sbjct: 238 VGVKWSFVPK--GEMQKYVICNADEGEPGTFKDRVLMEENPQQLIEGMLLCGYAIGATLG 295 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVRGE+ R E LQ+A+D+ A G LG +D DI V G GAY+CGEET+L+ Sbjct: 296 YIYVRGEYRRSIERLQSAIDQARAKGFLGKKIFGSNFDFDIFVKEGGGAYVCGEETSLIN 355 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G PR++PPFPA G G P+ VNNVE+++ +P I+ RGA W+ G GTK Sbjct: 356 SMEGKRGYPRVRPPFPAAAGFMGMPSNVNNVETLSSIPMIVARGADWFKSVGTATCAGTK 415 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L+ +SG VN VE M T ++I+ GG++ G A + G + + Sbjct: 416 LYCLSGKVNQTGLVELPMGATLRQMIDTFGGGMKSGSSFKFAQVGGAAGGIL--GADLMD 473 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D D + G LG+ V+V D+ T + + + F++HESCGQC PC+ GT + Sbjct: 474 LPLDIDSTIKAGVTLGSGVVLVCDQETCAVDFLLNVLNFFEHESCGQCIPCKLGTSQLHY 533 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 V ++ A++++I L+ + +K ++ ++CALG + PI+ +I+NFR + D + Sbjct: 534 VAQKFAMREAEEKDIQLMIDTAKMMKLASLCALGQSPILPIETMIRNFREEFVKHCDPDY 593 Query: 421 RCN 423 C Sbjct: 594 ECP 596 >gi|238897509|ref|YP_002923188.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465266|gb|ACQ67040.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 472 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 163/415 (39%), Positives = 241/415 (58%), Gaps = 12/415 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + K L + I++ VK +GL+GRGGAGFSTG+KWS MPK + Sbjct: 33 QPLWLEEYRNKNGYLGAKKALTRLTPEEIVHSVKEAGLKGRGGAGFSTGLKWSLMPKDPN 92 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 R YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 93 MRIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALQAYRGYIFLRGEYIEAAV 152 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E GLLG N G+D +++VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 153 HLRRAIVEATQVGLLGKNIMGSGFDFELMVHTGAGRYICGEETALINSLEGRRANPRSKP 212 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF-------GRENNRGTKLFSISG 246 PFPA+ G++G PT VNNVE++ VP I+ G +WY G + + GTKL SG Sbjct: 213 PFPASSGVWGKPTCVNNVETLCNVPAIMEHGVAWYQGIAPDASRFAKSKDTGTKLMGFSG 272 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E I+ E++E + GG++ G A PGG+ L + MD++ Sbjct: 273 RVKNPGVWELPFGISAREILEDYAGGMKNGLK-FKAWQPGGAGTDFLTEEHL-DLPMDFE 330 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + + GS LGTA + +D +++ L F+ ESCG CTPCR+G W +++++ L Sbjct: 331 HIGKAGSRLGTALAMAVDHEINMVSLTCNLEEFFARESCGWCTPCRDGLPWSVKILKALE 390 Query: 367 KGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +G ++ +I+ L ++ + + G+T CA A P+Q +K FR I + Sbjct: 391 RGEGREGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSALKYFREEFIAGITKKE 445 >gi|253998889|ref|YP_003050952.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4] gi|253985568|gb|ACT50425.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4] Length = 516 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL+D ++ + + L I+ +V SGLRGRGGA F Sbjct: 98 LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA+ A+GA Sbjct: 158 PTGIKWKTVHDCKAD-QKYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L A+ LG N G+ ++ V AGAY+CGEET+LL Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S A VP IL +G ++Y +G +RGT Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T +L+ GG G + AV GG LP Q Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + LG ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 395 DTPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM+++++G + I L+ ++S + ++CALG +P+ I +F Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHFPEDF 507 >gi|331010723|gb|EGH90779.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 452 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 164/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQAKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAR 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GWWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + KG Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|111220504|ref|YP_711298.1| NADH dehydrogenase I chain F [Frankia alni ACN14a] gi|111148036|emb|CAJ59702.1| NADH dehydrogenase I chain F [Frankia alni ACN14a] Length = 443 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 201/407 (49%), Positives = 266/407 (65%), Gaps = 6/407 (1%) Query: 8 IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T + + ++ + + L D +I +K SGLRGRGGAGF TGMKW Sbjct: 6 VLTRRWNTPESWTIETYRRLDGYVALRTALAGDPDDLIKLIKDSGLRGRGGAGFPTGMKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+P+ +PHYLV+NADE EPGTCKD +M+ +PH+L+EG +IA++A+ A+ AFIY+R Sbjct: 66 GFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKADPHSLVEGIIIAAYAVRANRAFIYLR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE I L+AAV E YA+G LG + G+D+D++VH GAGAYICGEETALL+SLEG+ Sbjct: 125 GELIHAGRRLRAAVAEAYAAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGR 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRL+PPFPA GLY PT VNNVE+IA VP I+ G W+ GRE G K+FS+S Sbjct: 185 RGQPRLRPPFPATHGLYASPTVVNNVETIATVPYIVNYGVDWFRTMGRERAPGPKIFSLS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M T EL+E G G L A PGGSS P L A + A +D+ Sbjct: 245 GHVTRPGQYEVPMGTTLRELLELAGG--VRGGRALKAWTPGGSSTPMLTAEHL-DAPLDF 301 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G++E GS LGTAA+++MD +TD+++ + RL+ FY HESCG+CTPCREGT WM++++ RL Sbjct: 302 EGMQEAGSLLGTAALMIMDETTDMLRVVRRLTQFYAHESCGKCTPCREGTSWMVKILSRL 361 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +G ++D L + NI GR CAL D A PI IK FR Sbjct: 362 ERGQGDASDVDTLVDACDNIFGRAFCALADGATSPIVSGIKYFRDEF 408 >gi|148656362|ref|YP_001276567.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1] gi|148568472|gb|ABQ90617.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1] Length = 449 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 192/415 (46%), Positives = 257/415 (61%), Gaps = 8/415 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVD-KILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + +L + G ++ + + E+ I+ VK SGLRGRGGAGF TG+KW Sbjct: 25 VLRDLDIEDIADFEVYLRHGGYEALRIAVTERTPADIVQTVKDSGLRGRGGAGFPTGVKW 84 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F+PK P YL+ N DESEPGT + I+ PH LIEG I+++AI AH A+IY+R Sbjct: 85 GFLPK--GVYPRYLLCNCDESEPGTFNNHQIIDRNPHQLIEGIAISAYAIEAHTAYIYIR 142 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF L+ A+ + Y G LG N GYD+DI VH GAGAYICGEETAL+ESLEGK Sbjct: 143 GEFAAAARRLERAIAQAYERGFLGRNIFGKGYDLDIYVHRGAGAYICGEETALMESLEGK 202 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 GQPRL+PPFPA GLYG PT +NNVE++ VP I+R GA+WY FG E + GTK+FSIS Sbjct: 203 IGQPRLRPPFPAVAGLYGKPTIINNVETLTNVPMIVRHGAAWYRQFGTEKSPGTKVFSIS 262 Query: 246 GHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 GHV P E I ELI +C G+R N+ V+PGG+S L A + M Sbjct: 263 GHVKRPGNYEAPFGIPLRELIFSPDYCQGMRSD-RNVKIVVPGGASAGWLTADDL-DVTM 320 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ L GS LG+ VIV+D S ++ +++ F+KHESCG+CTPCREGT ++++V+ Sbjct: 321 DYEALAAKGSMLGSGGVIVLDESVSAVEVAYKMDEFFKHESCGKCTPCREGTYFLVKVLH 380 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+ G +K +I LL++V + G C LG++A PI+ ++ F E+ I Q Sbjct: 381 RITHGHGRKEDIPLLHDVYHQMAGNCFCLLGESAVVPIRSALRLFPHEFEQAIAQ 435 >gi|66046430|ref|YP_236271.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae B728a] gi|63257137|gb|AAY38233.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv. syringae B728a] gi|330972911|gb|EGH72977.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aceris str. M302273PT] Length = 452 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|320095553|ref|ZP_08027217.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 178 str. F0338] gi|319977531|gb|EFW09210.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon 178 str. F0338] Length = 433 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 195/408 (47%), Positives = 242/408 (59%), Gaps = 11/408 (2%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L RG + +++ II+ VKASGLRGRGGAGF TG+KWSF+P Sbjct: 23 SWTLDSYRQRGGYQGLERARTMEPAAIIDAVKASGLRGRGGAGFPTGLKWSFLPPDDGG- 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVNADESEPGTCKD ++ PH LIEG I S AIG AF+Y+RGE L Sbjct: 82 PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLRGEVAHVYRRL 141 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AV E SG+LG + I H GAGAYICGEETALL+SLEG++G PRLKPPFP Sbjct: 142 LRAVREATESGVLG-------GLRITAHAGAGAYICGEETALLDSLEGRRGHPRLKPPFP 194 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A GLY PT VNNVE+IA V + R WYS G + ++G +FS+SGHV P E Sbjct: 195 AVAGLYARPTVVNNVETIAQVAGVFRNSPEWYSSMGTDKSKGHGIFSLSGHVANPGQFEA 254 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT ELI+ G L PGGSS P ++ +DY+ + GS LG Sbjct: 255 PFGITMRELIDMAGG--IRQGHRLKFWTPGGSSTPIFTEDEL-DTPLDYESVGAAGSMLG 311 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T A+ V D + +++ I R S FY+HESCG+CTPCREGT W+ ++M RL +G ++D Sbjct: 312 TRALQVFDETVSVVRVIARWSEFYQHESCGKCTPCREGTYWIKQIMLRLERGEGLPGDVD 371 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 LL E++ NI GR+ C LGDAAA PI IK FR E + R F Sbjct: 372 LLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFREEFEAGLTTPARERF 419 >gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 633 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 147/431 (34%), Positives = 233/431 (54%), Gaps = 11/431 (2%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58 T Q R + + + +S+ + + G ++ K L+ + I E+ SGLRGRGG Sbjct: 136 FYTRQQRFVLGDCGTIDPESIDEYLRNGGYEAAKKAFLQMSPEAICTEISESGLRGRGGG 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + D Y++ NADE +PG +R +M PH++IEG +IA+ AIGA Sbjct: 196 GFPTGRKWEAARRQAGD-KKYVICNADEGDPGAFMNRSVMEGNPHSVIEGLMIAARAIGA 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +YVR E+ E ++ AV + A G+LG N G ++ + GAGA++CGEETA Sbjct: 255 DETLVYVRAEYPLAVERMRRAVKDATARGILGENVFGSGLNISCEIMEGAGAFVCGEETA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 ++ S+EG++G PR KPPFPA GL+G PT +NNVE++A I+R GA + G + Sbjct: 315 MIASIEGQRGMPRPKPPFPAQSGLWGKPTIINNVETLAHAVRIVREGAIRFRQLGTPGSP 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG-----GWDNLLAVIPGGSSVPC 292 GTK F+++GHV +E T E++ GG+ AV GG S C Sbjct: 375 GTKTFALTGHVANTGLIEVPFGTTLREIVHNIGGGVTKSDGSIDPTGFKAVQIGGPSGGC 434 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 L + MD+D L+ +G+ +G+ ++ M++ T ++ F + ESCG+C CR Sbjct: 435 LTQEHL-DLPMDFDSLRTVGAMVGSGGLVAMNQDTCMVSVARFFMEFTQRESCGKCVLCR 493 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGT M+ +M+ +++G A + + LL E++ ++ ++C LG A P+ +++F Sbjct: 494 EGTRQMLALMDDIIEGRADETTLPLLRELAVAVQKGSLCGLGKTAPNPVLSTLRHFPEEY 553 Query: 413 EERIDQYHRCN 423 E + C Sbjct: 554 EAHVRD-KVCP 563 >gi|28870533|ref|NP_793152.1| NADH dehydrogenase I, subunit F [Pseudomonas syringae pv. tomato str. DC3000] gi|28853781|gb|AAO56847.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 452 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 164/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGF-TLKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|291298803|ref|YP_003510081.1| NADH-quinone oxidoreductase F subunit [Stackebrandtia nassauensis DSM 44728] gi|290568023|gb|ADD40988.1| NADH-quinone oxidoreductase, F subunit [Stackebrandtia nassauensis DSM 44728] Length = 438 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 186/407 (45%), Positives = 249/407 (61%), Gaps = 5/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + + K + D +I +K SG RGRGGAGF GMKW+F+P+ Sbjct: 24 DAWKLDVYERLDGYAALRKAFKYTPDDLIAFMKESGHRGRGGAGFPVGMKWAFIPQND-G 82 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADE EPGTCKD +M ++PH+LIEG +IA +A+ A AFIY+RGE + Sbjct: 83 KPHYLVVNADEGEPGTCKDLPLMMNDPHSLIEGIIIACYAVRASRAFIYIRGEAVHAARR 142 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ AV+E A+G LG N G D++I+VH GAGAYICGEETALL+SLEG +GQPRL+PP Sbjct: 143 LRHAVEEAKAAGYLGDNILDSGLDLEIVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT +NNV SIA VP I+ GA W+ G EN GT ++S+SG V P Sbjct: 203 FPATHGLYASPTVINNVGSIASVPHIVLGGAEWWKSLGSENAAGTMIYSLSGRVANPGQY 262 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + T DEL+E G +G NL PGGSS P L A + +D+D + + GS Sbjct: 263 ECRLGTTLDELLELAGGMAKG--HNLKFWTPGGSSTPML-AAKHSDVPLDFDNIAKAGSI 319 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+++ + + +R FY HESCG+CTPCREG WM R+ R++ G + Sbjct: 320 LGTTAMMIYSDADCPVYCTYRWLQFYAHESCGKCTPCREGNYWMTRIYRRILSGNGTHED 379 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +D L + N+ GR+ C LGD A P+ +K+F+ + I+ + R Sbjct: 380 LDTLLDACDNLLGRSFCGLGDGATSPVTSSLKHFKQDYIDYIEGHRR 426 >gi|213970031|ref|ZP_03398163.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato T1] gi|301381386|ref|ZP_07229804.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato Max13] gi|302062157|ref|ZP_07253698.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato K40] gi|302130467|ref|ZP_07256457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925135|gb|EEB58698.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato T1] gi|330875769|gb|EGH09918.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 452 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGF-TLKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|258651221|ref|YP_003200377.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita DSM 44233] gi|258554446|gb|ACV77388.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita DSM 44233] Length = 439 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 196/409 (47%), Positives = 258/409 (63%), Gaps = 6/409 (1%) Query: 8 IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + T + + S+ + + L D +I VK SGLRGRGGAGF TG+KW Sbjct: 16 VLTRRWASPRSWSIETYRQLDGYQALRSALTVDPDRLIELVKNSGLRGRGGAGFPTGLKW 75 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+PK S +PHYLV+NADE EPGTCKD +M +PH+LIEGC+I S+AI A IY+R Sbjct: 76 SFLPKGGS-KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIITSYAIRAPFCAIYIR 134 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + + AAV E A+G LG + GYD++I+VH GAGAYICGEETALL+SLEG+ Sbjct: 135 GEAVHAIRRVAAAVREAKAAGFLGRDILGSGYDLEIVVHGGAGAYICGEETALLDSLEGR 194 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +GQPRLKPPFPA GLY PT VNNVE+IA VP I+ G+ WY G E + G K++S+S Sbjct: 195 RGQPRLKPPFPAVEGLYASPTVVNNVETIASVPIIVMGGSDWYRSLGTEKSPGPKIYSLS 254 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV P E M T +L+ GG+R G L PGGSS P + + + Sbjct: 255 GHVTRPGQYEAPMGTTLRQLL-ASAGGMRDGIP-LKFFTPGGSSTPIFTPEHL-DVPLSF 311 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D + GS LGT A++ + + + A+W+ FYKHESCG+CTPCREGTGW+++++ R+ Sbjct: 312 DDVAAAGSMLGTTALMCFNETVSVPWAVWKWLEFYKHESCGKCTPCREGTGWLVQILRRV 371 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 V G ++D + + + NI GR+ CALGDAAA PI K FR E+ Sbjct: 372 VTGHGTLEDLDTMVDAAGNIAGRSFCALGDAAATPILSSFKYFRSEFED 420 >gi|229490823|ref|ZP_04384658.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121] gi|229322213|gb|EEN87999.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121] Length = 439 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 202/416 (48%), Positives = 263/416 (63%), Gaps = 10/416 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + + + K L D +I VK +GLRGRGGAGF TG+KWSF+P+ D Sbjct: 15 NSWTLDSYLRHDGYQALRKALAMSPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQSTED 74 Query: 76 RP-----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 +P HYLVVNADESEPGTCKD +M PHTL+EG +IA++AI A AFIYVRGE + Sbjct: 75 KPGDGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVV 134 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 LQ AV E YA+G LG + G+D+D++VH GAGAYICGEETALL+SLEG++GQP Sbjct: 135 PVLRRLQTAVAEAYAAGYLGRSILGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQP 194 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RL+PPFPA GLY CPT VNNVESIA VP+I+ G W+ G E + G L+S+SGHV Sbjct: 195 RLRPPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVT 254 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + IT EL+ + GG+R G L PGGSS P + +DY+G+ Sbjct: 255 TPGQYEAPLGITLRELL-DYAGGVRTG-HTLKFWTPGGSSTPIFTDEHL-DVPLDYEGVG 311 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 GS LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL G Sbjct: 312 AAGSMLGTKALQIFDDTTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGT 371 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++ L ++S I G++ CALGD A PI +K FR D C F Sbjct: 372 GTEADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFREEYVAHFDGNG-CPFD 426 >gi|154247408|ref|YP_001418366.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] gi|154161493|gb|ABS68709.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] Length = 520 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 223/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + SL+D + G + +++ + G + EV SGLRGRGGAGF Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 160 PTGIKWRTVAAAPAD-QRYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATK 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y R E+ ++ A+++ +GLLG N G D+ + GAGAY+CGEETALL Sbjct: 219 GYVYSRSEYPLAFVVMEKAIEKAREAGLLGDNILGSGLSFDMEMRMGAGAYVCGEETALL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+ PT +NN+ S+A VP IL +G +Y FG +RGT Sbjct: 279 ESLEGKRGLVRAKPPLPAHKGLFQKPTVINNLVSLATVPVILDKGGKYYRDFGMGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G++ + E + I EL+ GG G + AV GG LP Q Sbjct: 339 MPIQIAGNIKFGGLFETAFGIPLGELVYDIGGGTASGRP-VKAVQAGGPLGAYLPTHQ-F 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + +G ++V D + D+ F HESCG+CTPCR G+ + Sbjct: 397 DTPFDYEAFAAKDALIGHGGLVVFDDTADLADMAKFAMEFCAHESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G +++ + LL ++ ++ ++CALG +P+ + +F Sbjct: 457 ETIDKVIAGEKREQNLALLTDLCHTMKLGSLCALGGFTPYPVLSALNHFPEDF 509 >gi|294140411|ref|YP_003556389.1| NADH dehydrogenase I subunit F [Shewanella violacea DSS12] gi|293326880|dbj|BAJ01611.1| NADH dehydrogenase I, F subunit [Shewanella violacea DSS12] Length = 456 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 161/418 (38%), Positives = 239/418 (57%), Gaps = 11/418 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCS 74 LS+ +S G +D + + ++ D +++ +K S LRGRGGAGF TG+KWSF+P+ + Sbjct: 17 NCWQLSEYLSHGGYDGLTRAMKMSSDELLDTIKQSNLRGRGGAGFPTGLKWSFVPRGADA 76 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + YL+VNADE EPG KDR ++ PH +IEG +I +GA +I++RG++ E Sbjct: 77 PKEKYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEE 136 Query: 135 SLQAAVDECYASGLLGSNS------KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 L A++EC LLG + ++ +I +H AG YICGEETAL+ ++EGK+ Sbjct: 137 RLLQAIEECKQHQLLGRDILGRGIQGQAFNFEIHIHSSAGRYICGEETALINAMEGKRAT 196 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFP GL+G PT VNNVE+ +P I+ G+ W+ G+ + GTK+F +SG V Sbjct: 197 PRAKPPFPQVAGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRV 256 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E M + E+IE H GG+ G+ L +PGG S L + A MDYD + Sbjct: 257 KRPGLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DARMDYDEI 314 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 ++GS +GT +I++D I + L F+ ESCG CTPCREG W + ++E++ +G Sbjct: 315 GKLGSRMGTGTIIILDDQYCPISMVLNLVRFFAQESCGWCTPCREGLPWAVSLLEKIERG 374 Query: 369 IAQKREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++I+ L + G T CAL A P+Q +K FR E I+ C + Sbjct: 375 EGELKDIEQLENLCDFAAPGNTFCALAPGAVEPLQSALKFFRQDFEAHINHQC-CPYH 431 >gi|330900630|gb|EGH32049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. japonica str. M301072PT] Length = 423 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 1 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 60 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 61 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 120 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 121 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 180 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 181 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 240 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 241 GLWELPFGVQAPELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 298 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 299 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 358 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 359 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 404 >gi|156743330|ref|YP_001433459.1| NADH-quinone oxidoreductase subunit F [Roseiflexus castenholzii DSM 13941] gi|156234658|gb|ABU59441.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus castenholzii DSM 13941] Length = 451 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 189/418 (45%), Positives = 258/418 (61%), Gaps = 8/418 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVD-KILEKGRDWIINEVKASGLRGRGGAGFSTG 63 + + +L + G ++ + + E+ I+ VK SGLRGRGGAGF TG Sbjct: 24 EHIVLRDLDIENIADFDVYLQHGGYEALRIAVTERTPADIVQTVKDSGLRGRGGAGFPTG 83 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F+PK P YL+ N DESEPGT + I+ PH LIEG I+++AI A+ A+I Sbjct: 84 VKWGFLPK--GVYPRYLLCNCDESEPGTFNNHQIIDRNPHQLIEGIAISAYAIEANLAYI 141 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGEF L+ A+ + YA G LG N GYD+DI VH GAGAYICGEETAL+ESL Sbjct: 142 YIRGEFAAAARRLERAIAQAYARGFLGRNIFGTGYDLDIYVHRGAGAYICGEETALMESL 201 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK GQPRL+PPFPA GLYG PT +NNVE++ VP I+R GA WY FG E + GTK+F Sbjct: 202 EGKIGQPRLRPPFPAVAGLYGKPTIINNVETLTNVPMIVRHGAVWYRQFGTEKSPGTKVF 261 Query: 243 SISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 S+SGHV P E ELI ++C G+RG N+ V+PGG+S L A + Sbjct: 262 SVSGHVKRPGNYEAPFGTPLRELIFSPEYCQGMRGN-HNVKIVVPGGASAGWLTADDL-D 319 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDY+ L GS LG+ VIV+D + ++ +++ F+KHESCG+CTPCREGT ++++ Sbjct: 320 VTMDYEALAAKGSMLGSGGVIVLDERVNAVEVAYKMDEFFKHESCGKCTPCREGTYFLVK 379 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 V+ R+ G ++ +I LL++V + G C LG++A PI+ ++ F E I Q Sbjct: 380 VLHRITHGHGRQDDIPLLHDVYNQMAGNCFCLLGESAVVPIRSALRLFPHEFERAIAQ 437 >gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 489 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 146/424 (34%), Positives = 228/424 (53%), Gaps = 7/424 (1%) Query: 3 TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60 Q RI T N + +S+ + ++ + + + + I+NE+K SGLRGRGG GF Sbjct: 5 KKQYRIATRNCGFIDPESIDAYIQVRGYEALAEAVTNRQPADIVNEIKKSGLRGRGGGGF 64 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE +PG DR ++ +PH+++E + +AIGA Sbjct: 65 PTGLKWEITARNQAD-QKYVVCNADEGDPGAFMDRAVLEGDPHSVVEAMALCGYAIGATV 123 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +Y+R E+ + LQ A+ + +G+LG G+D DI + +GAGA++CGEETAL+ Sbjct: 124 GTVYIRAEYPLAIKRLQMAIKDAREAGVLGKRIFGSGFDFDIELKYGAGAFVCGEETALI 183 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 S+EG++G+P KPPFPA G +G PT +NNVE+ A V IL G W++G G E ++GT Sbjct: 184 HSMEGERGEPTTKPPFPAESGYWGKPTAINNVETFANVVPILLNGGDWFAGIGTEKSKGT 243 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F+++G V +E M T E+ GG G AV GG S L + Sbjct: 244 KVFALAGKVRNVGLIEVPMGTTLHEI-IFEIGGGILGGKKFKAVQTGGPSGGALTERDL- 301 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DYD L GS +G+ +IVMD ++ F E+CG+CTPCR G+ + Sbjct: 302 DTPIDYDNLVAKGSMMGSGGMIVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLY 361 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +++++ +G ++ L +S I+ +C LG PI + F I++ Sbjct: 362 EILDKITRGEGTPEDLSRLKLLSTAIKDTALCGLGQTMPNPILSTMSVFADEYAAHINE- 420 Query: 420 HRCN 423 +C Sbjct: 421 KKCP 424 >gi|146307439|ref|YP_001187904.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina ymp] gi|145575640|gb|ABP85172.1| NADH dehydrogenase subunit F [Pseudomonas mendocina ymp] Length = 448 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 163/408 (39%), Positives = 234/408 (57%), Gaps = 7/408 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + ++ + K L + I+ VK SGL+GRGGAGF TG+KW MP S Sbjct: 31 QPVWLEEYQAKNGYAAARKALTAMAQADIVQTVKDSGLKGRGGAGFPTGVKWGLMPTDES 90 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 91 LDIRYLLCNADEMEPNTWKDRLLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVEAAH 150 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 151 NLNRAIEEAKAAGLLGRNIFGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 210 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I++ G WY RE + GTKL SG V P Sbjct: 211 PFPAAVGVWGKPTCVNNVETLCNVPAIVQHGVDWYKSLAREGSEDHGTKLMGFSGKVKNP 270 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E I+ EL E+H GG+R G+ L PGG+ L + A+M G+ ++ Sbjct: 271 GLWELPFGISARELFEEHAGGMRDGY-RLKCWQPGGAGTGFLLPEHL-DALMYAGGIAKV 328 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G Sbjct: 329 GTRMGTGLALAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKILRALERGEGT 388 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + +I L + + G+T CA A P+ IK FR E + Q Sbjct: 389 REDIATLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFREEFEAGVAQ 436 >gi|262376773|ref|ZP_06070001.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii SH145] gi|262308483|gb|EEY89618.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii SH145] Length = 443 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 162/400 (40%), Positives = 231/400 (57%), Gaps = 6/400 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L ++ VKA+ ++GRGGAGF G+KWS M + P YL Sbjct: 33 DDYEALEGYAGFKKALTMSPKDVLEVVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 93 ICNADEMEPGTFKDRLLMEDLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 153 EQVRAKGYLGDNILGTGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G+ + GTK++ SG V +P E Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAGKSKDPGTKIYGASGKVKFPGLWELP 272 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE H GG+R G L A +PGG+S L A + MD + + + GS LGT Sbjct: 273 FGTTAREVIEDHAGGMRDGLK-LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ A L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDH 390 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L E+++ + G+T CA A P+ G +K FR E ++ Sbjct: 391 LQELTRKLWIGKTFCAHAPGAMEPLMGALKYFRGEFEAKV 430 >gi|91775074|ref|YP_544830.1| NADH dehydrogenase (quinone) [Methylobacillus flagellatus KT] gi|91709061|gb|ABE48989.1| formate dehydrogenase beta subunit [Methylobacillus flagellatus KT] Length = 516 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 146/413 (35%), Positives = 222/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q+R+ G+ SL D ++ + + ++ I+ +V SGLRGRGGA F Sbjct: 98 MKHQERLTFARVGITDPVSLQDYLAHDGYKGLRNAIDMAPQDIVQQVTDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + ++ Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 PTGIKWKTVLEAPAE-QKYVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ Y +G LG +D + V AGAY+CGEETALL Sbjct: 217 GYIYVRSEYPHSIAALNLAIKSAYEAGYLGRGILGSRHDFYLEVRRAAGAYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL +G+ +Y +G +RGT Sbjct: 277 ESLEGKRGLVRFKPPLPAISGLFGKPTVINNVISLASVPIILDKGSVYYRDYGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T EL+ + GG G + AV GG LP Q Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRELLYDYGGGSASGRP-IKAVQVGGPLGAYLPESQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + LG ++ D + D+ F ESCG+CTPCR G+ + Sbjct: 395 DTPLDYEEFGKLWAVLGHGGIVAFDDTVDMAHMARYAFEFCAVESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM++++ G + I L+ ++ + ++CALG +P+ + +F Sbjct: 455 EVMDKIIAGTDPAKHIALVRDLGDTMLNGSLCALGGMTPYPVLSALNHFPEDF 507 >gi|260551029|ref|ZP_05825234.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624] gi|260405977|gb|EEW99464.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624] Length = 443 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 166/421 (39%), Positives = 238/421 (56%), Gaps = 16/421 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+ QD + S D + + K L ++ +KA+ ++GRGGAGF Sbjct: 23 LSKQDAV---------HSADDYEALDGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFP 73 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KWS M P YL+ NADE EPGT KDR +M PH LIEG +IA + + A Sbjct: 74 AGIKWSLMAPNDGG-PRYLICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQG 132 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +I++RGE+I + L A+++ A G LG N G++ ++ VH GAG YICGEETAL+ Sbjct: 133 YIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALIN 192 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRG 238 SLEG++ PR KPPFP G +G PT VNNVE+ +P I+ RG WY G G+ + G Sbjct: 193 SLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPG 252 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK++ SG V +P E T E+IE H GG+R G L A +PGG+S LPA + Sbjct: 253 TKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI 311 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MD + + + GS LGT ++V+D + ++ L F+ ESCG CTPCR+G W Sbjct: 312 -DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWA 370 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ L G +K +ID L E+++ + G+T CA A P+ G +K+FR E ++ Sbjct: 371 VKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVT 430 Query: 418 Q 418 Sbjct: 431 N 431 >gi|115375223|ref|ZP_01462489.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca DW4/3-1] gi|115367785|gb|EAU66754.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca DW4/3-1] Length = 405 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 191/397 (48%), Positives = 258/397 (64%), Gaps = 14/397 (3%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 II+EVK S LRGRGGAGF TG+KWSF+PK + +P YL VNADESEPGT KDR I Sbjct: 1 MAPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NPKPKYLTVNADESEPGTFKDRYI 59 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 + +PH ++EG IA++A+G H +IY+RGEF + QAA+ E YA+G+ G Sbjct: 60 LSLDPHMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQRTQAAIQEAYAAGIFGKTLLGRD 119 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 Y+++ + GAGAYICGEETALLESLEGKKG PRLKPPFPA VGL+G PT +NNVE+++ Sbjct: 120 YELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKPPFPAVVGLFGSPTVINNVETLSN 179 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGGIR 274 VP I RGA WYS G + + GT+L +SG VN P E + T ELI +K+ G+ Sbjct: 180 VPHIFARGADWYSKLGTDKSGGTRLVCLSGTVNRPGVYEIPLQTTVSELIFGDKYGQGLP 239 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G ++ AVIPGGSS P L ++ ++++ L+ + G+ VIVMD ++ +++ +W Sbjct: 240 AG-RSVKAVIPGGSSAPVLSPNEL-DVALEFEALRLKQTMAGSGGVIVMDDTSCMVRCLW 297 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-------G 387 R++ FY ESCGQCTPCREGT W R++ ++ +G + +I++L V+ +I G Sbjct: 298 RVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGEMADIEMLSHVASSIAPYPPMGLG 357 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 TICALGDAAA P + FR E I + RC F Sbjct: 358 NTICALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 393 >gi|326204154|ref|ZP_08194014.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325985665|gb|EGD46501.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 429 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 150/419 (35%), Positives = 241/419 (57%), Gaps = 6/419 (1%) Query: 6 DRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64 D++ + +G ++ S+ + + G ++ + K + I E+K + L GRGGA + TG+ Sbjct: 2 DKVLSARFGKIKPDSVEEYIQAGGYEGLKKTMSMEHLDAIEEIKKANLFGRGGAAYPTGI 61 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW + P Y+V NADE EPGT KD+ I+ +P LIEG I ++ +GA +IY Sbjct: 62 KWEQAYAIQRG-PKYMVCNADEGEPGTFKDKHILAEDPFELIEGMTIGAYIMGAKEGYIY 120 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESL 182 +RGE+ + +++A++ +G LG N + G+D ++ V GAGAY+CGE TAL+ES+ Sbjct: 121 IRGEYAAIQRIVKSAIENAKKAGYLGKNILGREGFDFELKVVSGAGAYVCGENTALVESI 180 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK G+PR KPP+ N GLY PT +NNVE+ + +P I++ G +S G E + GTKL Sbjct: 181 EGKTGRPRQKPPYIKNCGLYQMPTILNNVETYSCIPWIIKDGGDKFSSMGTEFSGGTKLM 240 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 +SG+VN E +T ELI GG++ G L V GGSS C P + Sbjct: 241 CLSGNVNNRGVYEIPFGLTLRELIFNLGGGMKDGRK-LKFVHLGGSSGSCFPESMI-DTK 298 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 + Y LK+ G LG+ AV+V+D + + + + F++ ESCG+CTPCREG ++ ++ Sbjct: 299 ICYYDLKKAGFSLGSGAVLVVDDTHCAVDYLKTVMEFFEEESCGKCTPCREGNLRLVEIL 358 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +++ +G A + + + +++ ++ + C LG +A P+ L+K F E I+ R Sbjct: 359 DKMTEGTATMADFNKMKSLAQTMKTTSFCGLGQSAPMPLITLVKYFEEEFLEHINGKCR 417 >gi|117618370|ref|YP_856314.1| NADH dehydrogenase I subunit F [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559777|gb|ABK36725.1| NADH-quinone oxidoreductase, f subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 455 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 166/407 (40%), Positives = 237/407 (58%), Gaps = 7/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ +D K L + D I+ VK +GL+GRGGAGFSTG+KW MPK S Sbjct: 30 QPVWLDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFSTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ Sbjct: 90 MNIRYLLCNADEMEPNTYKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAA 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA G++G PT VNNVE++ VP I+ G +WY G + GTKL SG VN P Sbjct: 210 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT EL E + GG++ G+ L A PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGITARELFENYAGGMKPGY-RLKAWQPGGAGTGFLLPEHL-DAQMYAGGIGKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ L ++ + G+T CA A P+ +K FR E + Sbjct: 388 PGDLATLEQLVSFLGPGKTFCAHAPGAIEPLGSAMKYFRSEFEAGVK 434 >gi|226365385|ref|YP_002783168.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4] gi|226243875|dbj|BAH54223.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4] Length = 432 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 201/411 (48%), Positives = 267/411 (64%), Gaps = 6/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + +L ++ + K L D +I+ VK +GLRGRGGAGF TGMKWSF+P+ D Sbjct: 15 ESWTLDTYRRHDGYEGLQKALRMEPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQ-GDD 73 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH L+EG +IA++AI A AFIYVRGE + Sbjct: 74 KPHYLVVNADESEPGTCKDMPLLLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRR 133 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 LQAAV E YA+G LG + G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP Sbjct: 134 LQAAVAEAYAAGYLGKDILGTGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 193 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT VNNVESIA VP I+ G W+ G E + G L+S+SGHV P Sbjct: 194 FPAVAGLYASPTVVNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTTPGQY 253 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT EL+ + GG+R G L PGGSS P + +DY+G+ GS Sbjct: 254 EAPLGITLRELL-GYAGGVRAG-HRLKFWTPGGSSTPIFTDEHL-DVALDYEGVGAAGSM 310 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G + Sbjct: 311 LGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDAD 370 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + L +++ NI G++ CALGD AA PI +K FR +Q C F Sbjct: 371 LQKLLDIADNILGKSFCALGDGAASPIMSSVKYFRDEYLAHFEQGG-CPFD 420 >gi|134103325|ref|YP_001108986.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL 2338] gi|291004456|ref|ZP_06562429.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL 2338] gi|133915948|emb|CAM06061.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL 2338] Length = 431 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 204/400 (51%), Positives = 262/400 (65%), Gaps = 5/400 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L+ + + K L+ D +I VK +GLRGRGGAGF G+KWSFMPK Sbjct: 21 NSWTLATYEQLEGYSALRKALKAHPDQLIELVKGAGLRGRGGAGFPAGVKWSFMPKEP-V 79 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLV+NADE EPGTCKD +M +PH+LIEGCVIAS+A+ A+ IYVRGE + Sbjct: 80 KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCVIASYAMRANNCMIYVRGEALHCIRR 139 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L +AV E YA+G LG N G+D+DI+VH GAGAYICGEETALL+SLEGK+GQPRLKPP Sbjct: 140 LSSAVREAYAAGYLGKNILGSGFDLDIVVHAGAGAYICGEETALLDSLEGKRGQPRLKPP 199 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY CPTTVNNVE+IA VP I+ G+ W+ G E + G K++S+SGHV P Sbjct: 200 FPAAAGLYACPTTVNNVETIASVPYIVNGGSDWFRLMGSEKSPGPKIYSVSGHVERPGQY 259 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + T EL+E GG++ G L PGGSS P A + +D++G E GS Sbjct: 260 EAPLGTTLRELLE-LAGGMKDGIP-LKFWTPGGSSTPLFTAEHL-DVPLDFEGAAEAGSM 316 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT AV+V + + + A+ + + FY+HESCG+CTPCREGT W+ +V+ER+V+G + Sbjct: 317 LGTTAVMVFNETVSVPWAVMKWTQFYEHESCGKCTPCREGTFWLAQVLERMVEGRGTPED 376 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +D L +V NI GR+ CALGD A PI IK FR Sbjct: 377 VDTLLDVCDNIFGRSFCALGDGAVSPITSGIKYFREEFLA 416 >gi|110637782|ref|YP_677989.1| NADH dehydrogenase I subunit F [Cytophaga hutchinsonii ATCC 33406] gi|110280463|gb|ABG58649.1| NADH dehydrogenase subunit F [Cytophaga hutchinsonii ATCC 33406] Length = 448 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 202/415 (48%), Positives = 266/415 (64%), Gaps = 16/415 (3%) Query: 18 KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ S+G + V+K L+ D ++ EVK SGLRGRGGAGF TGMKWSF+ + S+ Sbjct: 16 ETYEVYRSKGGYRAVEKALKTMSPDDVMEEVKKSGLRGRGGAGFPTGMKWSFLDR-KSNN 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLV NADESEPGT KDR +M PH LIEG +++S+++G++ +IY+RGE+ L Sbjct: 75 PRYLVCNADESEPGTFKDRYLMEKNPHILIEGLIVSSYSLGSNSTYIYIRGEYKWIVGIL 134 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ E +G LG N G+D++I V++G GAYICGEETAL+ESLEGK+G PR+KPPF Sbjct: 135 EKAIAEAKNAGFLGKNILGSGFDLEIYVNNGGGAYICGEETALIESLEGKRGNPRIKPPF 194 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY CPT VNNVE++A V I+ G Y+ G + GTKL S GH+N P E Sbjct: 195 PAISGLYNCPTVVNNVETLATVTPIINMGGDEYAKLGIGKSTGTKLISACGHLNRPGVYE 254 Query: 256 ESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG------AIMDYDG 307 + + DE + +++CGGIR G + L AVI GGSSVP LPA +M Y+ Sbjct: 255 IDLGLPVDEFLNSDEYCGGIRKGHE-LKAVIAGGSSVPILPAELFMRNAAGEARLMSYES 313 Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 L G+ LG+ I MD +T I+ W L+ FY HESCGQC+PCREGTGWM +V+ Sbjct: 314 LSDGGFATGTMLGSGGFIAMDETTCIVHNTWTLARFYHHESCGQCSPCREGTGWMEKVLH 373 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RL G +IDLL E++ IEG TIC LGDAAAWP+ I++FR E + Sbjct: 374 RLEFGHGHMHDIDLLVEIASKIEGNTICPLGDAAAWPVAAAIRHFRDEFEYHVTH 428 >gi|50083953|ref|YP_045463.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1] gi|49529929|emb|CAG67641.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1] Length = 443 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 160/402 (39%), Positives = 233/402 (57%), Gaps = 7/402 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K + +++ VKA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYEALDGYAGFKKAIGMTPAEVLDVVKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA++ + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAAYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQARAKGYLGDNILGTGWNFELYVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE+H GG+R G L A +PGG+S L A + MD + + + GS LGT Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLAAEHI-DLPMDSESIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ A L F+ ESCG CTPCR+G W ++ ++ L G + +I Sbjct: 330 CLLMVVDETQCMVSATRNLEEFFARESCGWCTPCRDGLPWAVKALKALENGEGKMEDIQH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L E+++ + G+T CA A P+ G +K FR E ++ + Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKYFRSEFEAKVAK 431 >gi|217979755|ref|YP_002363902.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2] gi|217505131|gb|ACK52540.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2] Length = 516 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 151/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + SL D + W + + +E G I EV SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGIIDPVSLVDYAAHDGWKGLARAIEVGPAETIAEVTKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR + +P LIEG IA A+GA Sbjct: 158 PTGVKWKTVADAPAD-RRYIVCNADEGDSGTFADRMMFEGDPFALIEGMAIAGVAVGATK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y R E+ ++ A+ A+G LG N G+ ++ + GAGAY+CGEETALL Sbjct: 217 GYVYCRSEYPHAVKTFNEAIVLARAAGYLGPNILGSGFAFELEMRVGAGAYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGK+G R KPP PA+ GL+G PT +NNV S+ VP IL +G +Y+ FG +RGT Sbjct: 277 DSLEGKRGIVRAKPPLPAHKGLFGRPTVINNVLSLVAVPHILAKGGEFYASFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V + E + +T E++E GG R G + AV GG LP Q Sbjct: 337 MPLQIAGNVRFGGLFETAFGLTLGEIVEDIGGGTRSGRP-IRAVQCGGPLGAYLPVSQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + + +G ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 395 DTPFDYEAFSKKDALIGHGGIVVFDDTVDMAQMARFAMEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ G+ + I LL ++ ++ ++CALG A +P+ +++F Sbjct: 455 ETVDRIRAGVKVQENIALLEDLCNTMKFGSLCALGGFAPYPVTSALRHFPEDF 507 >gi|323139483|ref|ZP_08074531.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242] gi|322395285|gb|EFX97838.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242] Length = 517 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 152/413 (36%), Positives = 224/413 (54%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q+RI F + S+++ + G + + + G I EV SGLRGRGGAGF Sbjct: 98 MKRQNRITFARCGVIDPLSIAEYEAHGGGAGLARAFQIGPAATIEEVAKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+VVNADE + GT DR IM +P +LIEG +I +AI Sbjct: 158 PTGIKWKTVADAPAD-QRYVVVNADEGDSGTFADRMIMEGDPLSLIEGMIICGYAINGTK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ + QAA+D +G LG N G+ DI + GAGAY+CGEET+LL Sbjct: 217 GYVYLRSEYPVAAKVFQAAIDVARKAGWLGDNVRGSGFKFDIELRIGAGAYVCGEETSLL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT VNNV S+A P IL +GA Y+ G +RGT Sbjct: 277 ESLEGKRGIVRAKPPLPAHEGLFGKPTVVNNVLSMATTPMILEKGAQHYADLGVGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V Y E I E++ GG R G + AV GG +P + Sbjct: 337 MPLQIAGNVKYGGLFETDFGIPLGEIVNDIAGGTRSGRP-VRAVQVGGPLGAYVPVS-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ S +G +++ D + D+ F ESCG+CTPCR G+ + Sbjct: 395 DLPFDYEAFAAKDSLIGHGGLVIFDDTVDMAWMARFGMEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ KG + I+LL ++ ++ ++CALG A +P++ +++F Sbjct: 455 ETIDKIRKGENVEANIELLKDLCHTMKFGSLCALGGFAPYPVESALRHFPEDF 507 >gi|331017275|gb|EGH97331.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 452 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQAHELFEDYAGGMRDGF-TLKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|148259851|ref|YP_001233978.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5] gi|326403221|ref|YP_004283302.1| putative formate dehydrogenase beta subunit [Acidiphilium multivorum AIU301] gi|146401532|gb|ABQ30059.1| formate dehydrogenase beta subunit [Acidiphilium cryptum JF-5] gi|325050082|dbj|BAJ80420.1| putative formate dehydrogenase beta subunit [Acidiphilium multivorum AIU301] Length = 516 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 149/416 (35%), Positives = 215/416 (51%), Gaps = 5/416 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R G+ SL D G + ++ L G + VK SGLRGRGGAG Sbjct: 96 FLARQTRFTFGRAGIIDPLSLEDYRHHGGYKGLEAALSIGPAATVAAVKESGLRGRGGAG 155 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 156 FPTGIKWETVARAPAD-RKYVVCNADEGDSGTFADRLIMEADPFMLIEGMTIAGVAVGAT 214 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ ++ A++ +G LG +D D+ V GAGAY+CGEET+L Sbjct: 215 KGYVYIRSEYPLAIRMMRRAIEIAERAGYLGKGINGSAHDFDLEVRVGAGAYVCGEETSL 274 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+GQ R KPP PA GL+G PT +NN S+A VP IL GA Y+ G +RG Sbjct: 275 LESLEGKRGQVRPKPPLPAIEGLFGRPTIINNTISLASVPFILAEGAKRYAEMGYGRSRG 334 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G+V + E + +T EL+ GG G + AV GG P M Sbjct: 335 TMPVQLAGNVKHGGLFECAFGVTLGELVNDIGGGTASGRP-VKAVQAGGPLGAYFPVS-M 392 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ + +G ++V D + D+ + F ESCG+CTPCR G+ Sbjct: 393 FDTPYDYEAFAKRDGLIGHGGLVVFDDTADMAQMARFAMEFCALESCGKCTPCRIGSTRG 452 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + +R+ GI + + L+ ++ + ++ ++CALG +P+ I +F Sbjct: 453 VETFDRIRAGIEPETNLALVRDLCETMKFGSLCALGGFTPYPVLSAINHFPEEFRA 508 >gi|226944922|ref|YP_002799995.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ] gi|226719849|gb|ACO79020.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ] Length = 449 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 162/407 (39%), Positives = 231/407 (56%), Gaps = 7/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + + + K L E I+ VK SGL+GRGGAGF+TG+KW MP S Sbjct: 30 EPVWLDEYQQKNGYAAARKALAELSPADIVAIVKDSGLKGRGGAGFATGIKWGLMPADDS 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE+I Sbjct: 90 IDIRYLLCNADEMEPNTWKDRLLMEQLPHQLIEGMLISARALKAYRGYIFLRGEYIDAAR 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+ E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIAEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE+++ VP I+ G WY R + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLSNVPAIVGNGVDWYKSLARPGSEDMGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT EL E + GG+R G+ L GG+ L + A M G+ ++ Sbjct: 270 GLWELPFGITARELFEDYAGGMRDGY-RLKCWQSGGAGTGFLLPEHL-DAQMYAGGIGKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 328 GTRMGTGLALAVDDSINMVSLLRNLEEFFARESCGWCTPCRDGLPWSVKLLSALERGEGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++ L ++ + + G+T CA A P+ +K FR E + Sbjct: 388 PGDLETLEQLVRFLGPGKTFCAHAPGAVEPLGSALKYFRQEFEAGVR 434 >gi|293607184|ref|ZP_06689526.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553] gi|292814518|gb|EFF73657.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553] Length = 530 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 153/417 (36%), Positives = 229/417 (54%), Gaps = 9/417 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G + + L II+E+ SGLRGRGGA F Sbjct: 105 LKQQERLTFARVGVIDPLSLQDYAAHGGLAGLKRALAMDPAHIIDEMVTSGLRGRGGAAF 164 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 165 PTGIKWKTVAGTPGE-QKYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 223 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ E+L+AA+ A G LG++ G D+ V GAGAYICGEET+LL Sbjct: 224 GYIYVRSEYPHAIETLEAAIVRARAVGWLGADVHGSGRRFDLEVRKGAGAYICGEETSLL 283 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL +GA++Y +G + GT Sbjct: 284 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 343 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE++ ++ EL+ GG G L AV GG LP Q Sbjct: 344 LPFQLAGNVKQGGLVEKAFGLSLRELLYDFGGGSATGRP-LRAVQVGGPLGAYLPESQ-W 401 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D + D+ + F ESCG+CTPCR G+ + Sbjct: 402 DVPLDYEAYIQISAMIGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461 Query: 360 RVMERLVKGI----AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ +++++ LL ++ + G ++CALG A +P+ + +F Sbjct: 462 ETIDKIAASGANPAQREQQVHLLRDLCDTMMGGSLCALGGMAPYPVLSALNHFPQDF 518 >gi|296124095|ref|YP_003631873.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus DSM 3776] gi|296016435|gb|ADG69674.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus DSM 3776] Length = 443 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 183/431 (42%), Positives = 261/431 (60%), Gaps = 17/431 (3%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 M T + + ++ Q +L ++ G +++ K L + VK SGLRGRGGAGF Sbjct: 1 MSTYEPVLLARIHKEQSHTLDSYLADGGYESFKKALGMTPVEVTTLVKDSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+F+PK YL VN DESEPGT +R ++ +PH ++EG I+ +AI ++ Sbjct: 61 PTGLKWTFLPKDHPGPI-YLAVNGDESEPGTFNNRILLEKDPHQVLEGIAISCYAIRSNT 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 A++Y+R E+ +LQ AV ECY G+ G N G+D+D+ +H GA AYICGEET L+ Sbjct: 120 AYLYLRYEYGAAWRALQKAVAECYERGIFGKNVFGSGFDLDVRLHRGAAAYICGEETGLI 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE----- 234 ESLEGK+ PR+KPPFPA GL+ PT VNN+E++A V IL+RG W+ G Sbjct: 180 ESLEGKRAWPRIKPPFPAIEGLFRKPTIVNNIETMACVTQILKRGIDWFKSIGVPPDPNN 239 Query: 235 ----NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 + G KL+ +SGHVN P E + IT +LIE++ G G + AV+PGG S+ Sbjct: 240 PRDAGSYGPKLYCLSGHVNKPGCYEVPLGITARQLIEEYGG-GVPGGRGIKAVVPGGISM 298 Query: 291 PCLPAGQMRGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 L ++ +D++G ++G GLGTAAV+V+D T ++ ++ + F+ HESCGQCT Sbjct: 299 GFLAPSEL-DTPLDFNGPGKVGCLGLGTAAVVVIDDQTSMVDVVYNTARFFAHESCGQCT 357 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVS---KNIEGRTICALGDAAAWPIQGLIK 406 PCREGT WM R++ R+ G + ++DLL EVS + G TIC L D A WP++ I+ Sbjct: 358 PCREGTNWMQRILHRIRSGQGRMEDLDLLLEVSGGIGMMPGTTICGLADGAGWPVKNAIR 417 Query: 407 NFRPLIEERID 417 FR EE I Sbjct: 418 KFRSEFEEYIQ 428 >gi|262369337|ref|ZP_06062665.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046] gi|262315405|gb|EEY96444.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046] Length = 443 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 160/400 (40%), Positives = 233/400 (58%), Gaps = 6/400 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + + K + ++ +KA+ ++GRGGAGF G+KWS M + P YL Sbjct: 33 DDYEALEGYAGLKKAITMPPKDVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA++ + A +I++RGE+I L A+ Sbjct: 93 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAAYTLEATHGYIFIRGEYIEAAAYLNEAL 152 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 153 EQVRAKGYLGENILGTGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 272 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE + GG+R G L A +PGG+S L A + MD + + + GS LGT Sbjct: 273 FGTTAREVIEDYAGGMRDGLK-LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ A L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDH 390 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L E+++ + G+T CA A P+ G +K FR E ++ Sbjct: 391 LQELTRKLWIGKTFCAHAPGAMEPLMGALKYFRGEFEAKV 430 >gi|307328626|ref|ZP_07607799.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger Tu 4113] gi|306885738|gb|EFN16751.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger Tu 4113] Length = 460 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 199/418 (47%), Positives = 257/418 (61%), Gaps = 13/418 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + ++ + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 28 NSWALRTYLRHEGYEGMRKALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDG 86 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH+LIEG VIA AI + AFIY+RGE + Sbjct: 87 KPHYLVVNADESEPGTCKDIPLLYANPHSLIEGMVIACHAIRSEHAFIYLRGETVPVLRR 146 Query: 136 LQAAVDECYASGLLG----SNSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKG 187 L AV E Y +G LG KLG D +DI VH GAGAYICGEETALL+SLEG++G Sbjct: 147 LHEAVREAYEAGYLGTAERRRDKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRG 206 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPRL+PPFPA GLY CPT VNNVESIA VP IL +G W+ G E + G L+S+SGH Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKEWFRSMGSEKSPGFTLYSLSGH 266 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E + IT +L++ G L PGGSS P L + +DY+G Sbjct: 267 VANPGQFEGPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEG 323 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ L Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDLEA 383 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + ++D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 384 GKGRMDDLDKLADIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGGG-CPFD 440 >gi|282891845|ref|ZP_06300325.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498278|gb|EFB40617.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 432 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 177/400 (44%), Positives = 241/400 (60%), Gaps = 6/400 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + + K + D +I+ VK S LRGRGGAGF TGMKW F+PK P Sbjct: 19 IETYERNGGYQAIRKAIPHMQPDALIDLVKQSELRGRGGAGFLTGMKWGFVPKNPQ-IPK 77 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV N+DESEPGT KDR ++ ++PH +IEG ++AS+AIGA AFIY RGEF L+ Sbjct: 78 YLVCNSDESEPGTFKDRLLIENDPHQVIEGIILASYAIGAKLAFIYCRGEFYEGIRHLEK 137 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV + G LG++ ++IIVH GAGAYI GEETALL SLEG + PRLKPPFPA Sbjct: 138 AVQDAKQKGYLGNSILGSQVSLEIIVHPGAGAYIAGEETALLNSLEGYRATPRLKPPFPA 197 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GLYG PT +NNVE+++ V I+ RG WY G+ N GTK+F +SG V P E Sbjct: 198 VEGLYGKPTIINNVETLSNVVHIVNRGVEWYKSIGKPKNTGTKIFQVSGQVQKPGCFEFP 257 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + + E++E G + G A PGGSS L + MD++ L S LGT Sbjct: 258 LGTSLREVLEAAGGMLPG--RRFKACYPGGSSCALLTERDL-DITMDFEALAARKSALGT 314 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A++IVMD + D++K RL FY++ESCG+CTPCREGT W+++++ER+ G ++ Sbjct: 315 ASIIVMDDTADMVKVAHRLMQFYQNESCGKCTPCREGTRWVVQMLERIEAGKGTIWDLKK 374 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +V +++E + C L AA PI ++ F+ E I Sbjct: 375 IEQVCQHMEVESFCPLAVGAAPPIVSAMREFKNEFEVYIR 414 >gi|160936107|ref|ZP_02083480.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC BAA-613] gi|158440917|gb|EDP18641.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC BAA-613] Length = 1033 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 158/424 (37%), Positives = 239/424 (56%), Gaps = 6/424 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R+ N ++ SL +SR + + + L E ++ E+KA+GLRGRGGA Sbjct: 131 FFKGQVRVALRNCGHMEYASLEAYISRDGYGALARALSEMTPAQVVEEMKAAGLRGRGGA 190 Query: 59 GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GF TG+KW K S D ++V NADE +PG DR I+ +PH++IEG ++ +AIG Sbjct: 191 GFPTGVKWEAGMKAVSEDGRKFMVCNADEGDPGAFMDRSILEGDPHSIIEGMMLGGYAIG 250 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A ++YVR E+ E L A+D+ +G+LG N G+ D+ + GAGA++CGEET Sbjct: 251 ASKGYVYVRAEYPIAVERLGNAIDQARKAGILGENVMGSGFSFDLEIRIGAGAFVCGEET 310 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 +LL S+EGK+G+PR KPPFP GL+ PT +NNVE++A I+ G+ WY GFG E + Sbjct: 311 SLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANAAPIILNGSQWYRGFGTEKS 370 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK+F+++G + +E M ++ GG G A+ GG S CL Sbjct: 371 AGTKVFALAGDIVNAGIIEVPMGTILGDI-IYKIGGGIIGGKKFKAIQSGGPSGGCLTKT 429 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +DY+ L +G+ +G+ +IVM+ T ++ F ESCG+C PCR GT Sbjct: 430 HL-NTPVDYESLSSLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 488 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 M+ ++ER+ +G Q +++LL E++ I+ +C LG A P+ +K FR E I Sbjct: 489 RMLEILERITEGKGQPEDLELLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRSEYEAHI 548 Query: 417 DQYH 420 + H Sbjct: 549 YEKH 552 >gi|182677976|ref|YP_001832122.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] gi|182633859|gb|ACB94633.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica ATCC 9039] Length = 516 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 156/413 (37%), Positives = 231/413 (55%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ +SL D ++ G + + + L+ G +I EV SGLRGRGGAGF Sbjct: 99 LAKQQRLTFARCGIVDPRSLEDYLAHGGYRGLARALDLGPAAMIEEVVESGLRGRGGAGF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 159 PTGIKWRTVAQTKPG-QKYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGATK 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +++AA++ + LGSN + + DI V GAGAY+CGEETALL Sbjct: 218 GYIYIRSEYPHAVHAMEAAIEAARRADYLGSNVAGSEWAFDIEVRVGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+VGL+GCPT +NNV S+A VP IL +GA Y +G +RGT Sbjct: 278 ESLEGKRGLVRAKPPLPAHVGLFGCPTVINNVMSLATVPFILAQGAKTYQDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V + VE + +T EL+E GG R G + AV GG P + Sbjct: 338 MPIQLAGNVKHGGLVEIAFGVTLGELVEGFGGGTRSGRP-VRAVQVGGPLGAYFPVD-LF 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G ++V D + D++K F HESCG+CTPCR G+ Sbjct: 396 DTPFDYEAFAARDGLIGHGGIVVFDDTVDMLKQARFAMEFCAHESCGKCTPCRIGSTRGA 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ G+ + + L+ ++ + ++ ++CALG +P+ + +F+ Sbjct: 456 ETLDKIAHGMEAEHNLALVKDLCETMKFGSLCALGGFTPYPVMSALTHFQDDF 508 >gi|184157033|ref|YP_001845372.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii ACICU] gi|260555654|ref|ZP_05827874.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter baumannii ATCC 19606] gi|332872608|ref|ZP_08440576.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059] gi|183208627|gb|ACC56025.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii ACICU] gi|260410565|gb|EEX03863.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter baumannii ATCC 19606] gi|322506932|gb|ADX02386.1| nuoF [Acinetobacter baumannii 1656-2] gi|323516799|gb|ADX91180.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii TCDC-AB0715] gi|332739137|gb|EGJ69996.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059] Length = 443 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 162/402 (40%), Positives = 233/402 (57%), Gaps = 7/402 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L ++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYEALEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE+H GG+R G L A +PGG+S LPA + MD + + + GS LGT Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L E+++ + G+T CA A P+ G +K+FR E ++ Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVTD 431 >gi|51892729|ref|YP_075420.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM 14863] gi|51856418|dbj|BAD40576.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM 14863] Length = 425 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 181/426 (42%), Positives = 253/426 (59%), Gaps = 10/426 (2%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 M+ + + + + ++ ++G + + K L I+ EVK + LRGRGGAGF Sbjct: 1 MIQFEPVLTKGIGKVDLTNIDVYEAQGGYQALRKALAMEPQAIVEEVKKANLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KWSF+P RP YL VNADESEPGTC +R ++ PH LIEG +I ++A Sbjct: 61 PAGVKWSFLP--NDGRPRYLTVNADESEPGTCNNRTLIYANPHQLIEGILITAYANRITQ 118 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +FIY+RGEF R E L A+++ G +G N G+ +I VH GA AYICGEE+ALL Sbjct: 119 SFIYIRGEFKRGAEILMKAIEDARRKGYVGQNILGTGFSQEITVHRGASAYICGEESALL 178 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GREN 235 SLEG++G+PR+KPPFPA VGLYGCPT +NNVE+I+ VP I++ G WY+ Sbjct: 179 NSLEGRRGEPRVKPPFPAVVGLYGCPTIINNVETISNVPHIIKNGWEWYTKITANPDNPK 238 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + G K+F++SG V P E M + ++IE GG+R G L AV PGGSS P L Sbjct: 239 SCGPKIFTVSGCVQRPGNYELPMGVKLRDVIE-IAGGLRPGRK-LKAVQPGGSSTPMLTP 296 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + MD++ + GS LGTAAVIV D + D++ + FY HESCGQCTPCREGT Sbjct: 297 DHL-DVPMDFESVAAAGSLLGTAAVIVYDDTVDLVDVALYWARFYSHESCGQCTPCREGT 355 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 W+ RV R+ +G + ++ ++ ++ + G TIC L DAA L+K F ++ Sbjct: 356 HWLERVFTRIKEGGGTEGDLKMIADMQTQMAGTTICVLSDAAVAFPASLLKLFPEELDRY 415 Query: 416 IDQYHR 421 I++ Sbjct: 416 INRVKE 421 >gi|81299090|ref|YP_399298.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942] gi|3947771|emb|CAA73873.1| hoxF [Synechococcus elongatus PCC 6301] gi|81167971|gb|ABB56311.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942] Length = 534 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 140/419 (33%), Positives = 238/419 (56%), Gaps = 9/419 (2%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58 + Q +I G + L ++ G + + I + ++ ++ SGLRGRGG Sbjct: 112 FFSQQLKIVNRHSGLINPDRLESYLAAGGYRALMHTIFDLTPTEVVEIIRLSGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ SD ++V N DE +PG DR ++ +PH +IEG IA++A+GA Sbjct: 172 GYPTGLKWATVAKMPSD-RKFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ L A+ + GLLG++ + D+ V GAGA++CGEETA Sbjct: 231 NFGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S++G++G PR++PP+PA GL+G PT +NNVE+ A + I+ +GA W++ G ++ Sbjct: 291 LIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQGADWFAAIGTPTSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M I +++ G+ + AV GG S C+P Q Sbjct: 351 GTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLAQ 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L ++GS +G+ ++VMD +TD++ F + ESCG+C PCR GT Sbjct: 407 L-DTPVDYDSLIQLGSMMGSGGMVVMDENTDMVAIARFYMEFCRSESCGKCIPCRAGTVQ 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++ +L G ++ L ++ ++ ++C LG +A PI ++ FR E R+ Sbjct: 466 LHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESRL 524 >gi|169634177|ref|YP_001707913.1| NADH dehydrogenase I chain F [Acinetobacter baumannii SDF] gi|169797054|ref|YP_001714847.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE] gi|213156540|ref|YP_002318201.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057] gi|215484515|ref|YP_002326750.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB307-0294] gi|301347790|ref|ZP_07228531.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB056] gi|301510625|ref|ZP_07235862.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB058] gi|301595910|ref|ZP_07240918.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB059] gi|332852143|ref|ZP_08433970.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150] gi|332867542|ref|ZP_08437695.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113] gi|169149981|emb|CAM87875.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE] gi|169152969|emb|CAP02015.1| NADH dehydrogenase I chain F [Acinetobacter baumannii] gi|213055700|gb|ACJ40602.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057] gi|213987937|gb|ACJ58236.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii AB307-0294] gi|332729515|gb|EGJ60854.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150] gi|332733959|gb|EGJ65104.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113] Length = 443 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 162/402 (40%), Positives = 234/402 (58%), Gaps = 7/402 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L ++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYEALEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG+N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGNNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE+H GG+R G L A +PGG+S LPA + MD + + + GS LGT Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L E+++ + G+T CA A P+ G +K+FR E ++ Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVTD 431 >gi|271501264|ref|YP_003334289.1| NADH-quinone oxidoreductase subunit F [Dickeya dadantii Ech586] gi|270344819|gb|ACZ77584.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech586] Length = 449 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 169/409 (41%), Positives = 237/409 (57%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D ++ VK +GLRGRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYAGAKKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAA 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G +G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429 >gi|330954559|gb|EGH54819.1| NADH dehydrogenase I subunit F [Pseudomonas syringae Cit 7] Length = 440 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 163/406 (40%), Positives = 229/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG +G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGGWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E + EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|226306209|ref|YP_002766169.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4] gi|226185326|dbj|BAH33430.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4] Length = 439 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 206/416 (49%), Positives = 266/416 (63%), Gaps = 10/416 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + R + + K L D +I VK +GLRGRGGAGF TG+KWSF+P+V D Sbjct: 15 NSWTLDSYLRRDGYQALRKALATPPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQVSED 74 Query: 76 RP-----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 +P HYLVVNADESEPGTCKD +M PHTL+EG +IA++AI A AFIYVRGE + Sbjct: 75 KPGDGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVV 134 Query: 131 RERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 LQ AV E YA+G LG N G+D+D++VH GAGAYICGEETALL+SLEG++GQP Sbjct: 135 PVLRRLQTAVAEAYAAGYLGRNVLGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQP 194 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 RL+PPFPA GLY CPT VNNVESIA VP+I+ G W+ G E + G L+S+SGHV Sbjct: 195 RLRPPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVT 254 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P E + IT EL+E + GG+R G L PGGSS P + +DY+G+ Sbjct: 255 TPGQYEAELGITLRELLE-YAGGVRAG-HTLKFWTPGGSSTPIFTDEHL-DVPLDYEGVG 311 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 GS LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL G Sbjct: 312 AAGSMLGTKALQIFDETTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGT 371 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + ++ L ++S I G++ CALGD A PI +K FR D C F Sbjct: 372 GTEADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFREEYVAHFDGNG-CPFD 426 >gi|239501290|ref|ZP_04660600.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter baumannii AB900] Length = 443 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 163/402 (40%), Positives = 233/402 (57%), Gaps = 7/402 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D S + K L ++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYESLEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE+H GG+R G L A +PGG+S LPA + MD + + + GS LGT Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L E+++ + G+T CA A P+ G +K+FR E ++ Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVTD 431 >gi|187736101|ref|YP_001878213.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835] gi|187426153|gb|ACD05432.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835] Length = 466 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 201/440 (45%), Positives = 267/440 (60%), Gaps = 23/440 (5%) Query: 3 TDQDRIFTNLYGLQGK--SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + RI N+ +G S+ ++ G ++ + K L +I+EVK SGLRGRGGAGF Sbjct: 14 RETRRILKNVN-REGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGF 72 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+F+P + +P YLV N DESEPGT KDR I+ +PH LIEG VI+S+A+GAH Sbjct: 73 PTGVKWTFIP-PNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQ 131 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+R EF E + A+ E G LGSN GY+++I +H GAGAYICGEETALL Sbjct: 132 AYIYMREEFPIAAEIMLKALQEARERGFLGSNIQGSGYNLEIHLHRGAGAYICGEETALL 191 Query: 180 ESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 SLEG + PR+KPP FPA +GLYGCPT VNNVES+ V I+ G YS G + + G Sbjct: 192 NSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEAYSQEGAKRSPG 251 Query: 239 TKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG- 296 T++ +SG V P E S S+TF EL+ CGG R G AVIPGGSS + Sbjct: 252 TRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDG-RQFKAVIPGGSSSKVMRTDA 310 Query: 297 --------------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 +D D + GS G+ AVIVMD S + A+ ++ FY H Sbjct: 311 EYKVQNPDGTMGKITFFDIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAH 370 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCGQCTPCREG WMM++ R+++G A ++DLL EV+ IEG+T+CA G+AA+WP Q Sbjct: 371 ESCGQCTPCREGCPWMMKLSTRILEGKAAPSDVDLLIEVANQIEGKTVCAFGEAASWPTQ 430 Query: 403 GLIKNFRPLIEERIDQYHRC 422 ++ F+ D ++ C Sbjct: 431 AMVSKFKEEFVALTDPFNAC 450 >gi|251789018|ref|YP_003003739.1| NADH dehydrogenase I subunit F [Dickeya zeae Ech1591] gi|247537639|gb|ACT06260.1| NADH-quinone oxidoreductase, F subunit [Dickeya zeae Ech1591] Length = 449 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 169/409 (41%), Positives = 237/409 (57%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D ++ VK +GLRGRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLEEYRSKNGYAGAKKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAA 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G +G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429 >gi|187477322|ref|YP_785346.1| NAD-dependent formate dehydrogenase subunit beta [Bordetella avium 197N] gi|115421908|emb|CAJ48428.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella avium 197N] Length = 518 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 158/414 (38%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + S+ D + G +++ L + II EV ASGLRGRGGA F Sbjct: 101 LRHQERLTFVRVGVIDPLSIQDYAAHGGLAGLERALNLTPEQIIEEVAASGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVHSAPS-ATKYIVCNADEGDSGTFADRLLMEGDPYALIEGMTIAGLAVGARY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ G LG + G D+ V GAGAYICGEETALL Sbjct: 220 GYIYVRSEYPHAIATLRAAIGRAREVGWLGEDIHGSGRCFDLEVREGAGAYICGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VPTIL RGA++Y +G + GT Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGQPTVINNVISLATVPTILARGAAFYRDYGVGRSHGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ ++ EL+ GG G L A GG LP Q Sbjct: 340 LPFQLAGNIRQGGLVEKAFGLSLRELLYDFGGGSASGRP-LRAAQVGGPLGAYLPESQ-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G V+ D S D+ + F ESCG+CTPCR G+ + Sbjct: 398 DVPLDYEAYIAISAMVGHGGVVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVK-GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R++ G ++ ++ LL ++ + G ++CALG A +P+ + +F Sbjct: 458 ETLDRIMAGGEQREAQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHFPEDF 511 >gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] Length = 655 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 194/431 (45%), Positives = 264/431 (61%), Gaps = 18/431 (4%) Query: 4 DQDRIFTNLYGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + R+ +G + L+ ++ G + +++ L+ + I++EVK SGLRGRGGAGF Sbjct: 188 REKRVVFKNIDREGWTNDLNCYLNDGGYKQLEQALKMKPEEIVDEVKKSGLRGRGGAGFP 247 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KW F+ K +P YL+ NADESEPGT KDR I+ +PH LIEG VI+ FA+GA+ A Sbjct: 248 CGVKWGFI-KRGGPKPTYLICNADESEPGTFKDRYIIHQDPHQLIEGMVISCFAVGANLA 306 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF + L+ A+ E A LG N G+D +I VH GAGAYICGEET L+E Sbjct: 307 YIYIRGEFPEGAQILEKALAEARAKNFLGKNILGSGFDCEIYVHRGAGAYICGEETGLIE 366 Query: 181 SLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASW-YSGFGRENNRG 238 SLEGK+ PR+KPP FPA +GLY CPT VNNVE++ V IL G Y+ G+ NN G Sbjct: 367 SLEGKRAYPRIKPPYFPAVLGLYQCPTIVNNVETLCDVKHILAMGGGAGYAKLGKPNNTG 426 Query: 239 TKLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG- 296 T++ +SG V P E + +T ELI CGG+R L AVIPGGSS L AG Sbjct: 427 TRILCVSGDVKKPGYYEVEVGSLTMGELINDVCGGLR-DGRTLKAVIPGGSSAKVLKAGE 485 Query: 297 ---------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 + MD+D L GS G+ VIVMD S D+++ + ++ FY HESCGQ Sbjct: 486 KYKLKDKEITLEEIPMDFDTLAAAGSMAGSGGVIVMDDSRDMVETLNNINEFYAHESCGQ 545 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCREG WM ++ +R+++G ++ D+L V+ NI G+TICA G+A +WP Q + Sbjct: 546 CTPCREGALWMKKITDRIIEGGGTAKDPDVLKNVADNIAGKTICAFGEACSWPTQSFVLK 605 Query: 408 FRPLIEERIDQ 418 FR + + Sbjct: 606 FRDEFTAKAKK 616 >gi|242239964|ref|YP_002988145.1| NADH dehydrogenase I subunit F [Dickeya dadantii Ech703] gi|242132021|gb|ACS86323.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech703] Length = 449 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 173/409 (42%), Positives = 238/409 (58%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D ++ VK +GLRGRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYCSKNGYAGARKALTGMSQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH LIEG VI ++A+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLIEGMVIGAYALKAYRGYIFLRGEYIEAAA 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 NLRRAIEEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G +G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V P Sbjct: 203 PFPAMAGAWGKPTCVNNVETLCNVPAIVEHGIEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQICRYLAPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429 >gi|330889656|gb|EGH22317.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. mori str. 301020] Length = 453 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 164/407 (40%), Positives = 231/407 (56%), Gaps = 8/407 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQAKDGYAAARKALTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITF-DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 E + EL E + GG+R G+ L PGG+ L + A M G+ + Sbjct: 270 GLGELPFGVQAPRELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAK 327 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 +G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + KG Sbjct: 328 VGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQG 387 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 Q +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 QPGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 434 >gi|114566322|ref|YP_753476.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337257|gb|ABI68105.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 408 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 168/419 (40%), Positives = 235/419 (56%), Gaps = 13/419 (3%) Query: 2 LTDQDRIFTNLY-GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + ++ RI + D + G + ++K +I EVK SGLRGRGGAGF Sbjct: 1 MAEEIRILLAHADQIDPAQAEDYIKVGGFKGLEKARGMTSKDLIEEVKKSGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + GMKWSF+P Y+V N DE EPGT KDR I LIEG I AI A Sbjct: 61 NAGMKWSFVPPAE---VKYVVCNLDEGEPGTYKDRIICEKNAQALIEGMAICGVAINAKQ 117 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGE+ + L+ A+ G LG DI V GAGAY+CGEETAL+E Sbjct: 118 GYIYCRGEYPFVVDLLRKAIQSAKDVGALGE-------FDIEVRMGAGAYVCGEETALIE 170 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG +G+PR KPPFP GL+G PT VNNVE+ A +P IL GA W++ G GTK Sbjct: 171 SIEGHRGEPRFKPPFPGVAGLWGVPTVVNNVETFACLPYILTNGADWFASIGAPKYPGTK 230 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +++G VN P E + ++I K GGI+ G AV GG+S +P + Sbjct: 231 VLTLTGDVNNPTYFEVPTNYILSDVIYKLGGGIKNGRK-FKAVQVGGTSGAFIPEQNL-N 288 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+D + +G+ LG+ AV+VMD + DI+ + R+S F++HESCG+C PCREGT Sbjct: 289 TSIDFDSMSAIGAALGSGAVLVMDETRDIVDIVTRISKFFEHESCGKCNPCREGTFRCRE 348 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +ME++ G A + +ID L +++ ++ +C LG AA PI I++F ++ QY Sbjct: 349 IMEKINSGRATEADIDNLLLLARVMKRAALCGLGQAAPVPITSTIEHFGHEYRRKLLQY 407 >gi|294056100|ref|YP_003549758.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita akajimensis DSM 45221] gi|293615433|gb|ADE55588.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita akajimensis DSM 45221] Length = 454 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 195/419 (46%), Positives = 259/419 (61%), Gaps = 20/419 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + G ++++ K + + I EV SG+RGRGGAGF GMKW F+ + S +P Sbjct: 21 DIDCYIKHGGYEDLKKAITMKPEDICQEVMESGVRGRGGAGFPAGMKWKFLDR-KSGKPI 79 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV N DESEPGT KDR I+ +PH LIEG +I+++AI A AFIY+RGEF + L+ Sbjct: 80 YLVCNCDESEPGTFKDRQIVHKDPHQLIEGMMISAYAIQAKLAFIYIRGEFFQGYRILEQ 139 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196 A++E A LLG N GY DIIVH GAGAYICGEET L+ES+EG + PR+KPP FP Sbjct: 140 AIEEARAKNLLGDNILGSGYSCDIIVHRGAGAYICGEETGLIESIEGNRANPRIKPPYFP 199 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A +GLY CPT VNNVE++ V I+ G ++ G N GT+ + +SGHV P E Sbjct: 200 AALGLYQCPTIVNNVETLCDVKHIVAMGGKGFADIGTPGNTGTRTWCVSGHVMKPGYYEF 259 Query: 257 SM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ---------------MRG 300 + IT ELI CGG++ G L AVIPGGSS L A + + Sbjct: 260 ACADITLGELIYDVCGGLKPGRK-LKAVIPGGSSAKVLRADERFKGKLKDGTEFDWGIED 318 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D L GS G+ VIVMD STDI++A+ ++ FY HESCGQCTPCREG W+ + Sbjct: 319 IPMDFDSLMACGSMSGSGGVIVMDDSTDIVEALANINYFYAHESCGQCTPCREGVPWLRK 378 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V +R+V G A++ + DLL ++ I GRTICA G+AA+WP+Q I+ F+ E+ + Sbjct: 379 VTQRMVDGEAREEDADLLKSIADQIAGRTICAFGEAASWPVQSFIEKFKDEFVEKAREQ 437 >gi|284039947|ref|YP_003389877.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74] gi|283819240|gb|ADB41078.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74] Length = 446 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 203/415 (48%), Positives = 261/415 (62%), Gaps = 16/415 (3%) Query: 18 KSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ +G + V+K I + I+ EVK +G+RGRGGAGF GMKWSF+ K Sbjct: 16 ETFDVYRKQGGYTAVEKTIKTMTPEAIVEEVKKAGVRGRGGAGFPMGMKWSFLAK-PEGV 74 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLV NADESEPGT KD +M++ PH LIEG +I+SFA+GA+ +FIYVRGE + L Sbjct: 75 PRYLVCNADESEPGTFKDHYLMKNIPHLLIEGMIISSFALGANKSFIYVRGELMYVIHIL 134 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+ E A G LG N GYD++++V G GAYICGEETALLESLEGK+G PR KPPF Sbjct: 135 EKAIAEATAKGFLGKNIMGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPF 194 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GLY PT VNNVESIA P I+ G Y+G G + GTKL S SGH+N P E Sbjct: 195 PAVKGLYQSPTVVNNVESIATTPWIVNNGGDAYAGVGIGRSTGTKLISASGHINKPGVYE 254 Query: 256 ESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDG 307 + + ++ I + CGGIR A++ GGSSVP LPA +M Y+ Sbjct: 255 IELGVPVEDFIYADEWCGGIR-PGHKFKALVAGGSSVPILPANLALTLANGEKRLMSYES 313 Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 L G+ LG+ IV D ++ I++ W S FY HESCGQC+PCREGTGWM +V+ Sbjct: 314 LSDGGFATGTMLGSGGFIVFDETSCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLH 373 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R+ G +++IDLL +V+K IEG TIC LGDAAAWP+ I++FR + ID Sbjct: 374 RIEHGHGHQQDIDLLVDVAKKIEGNTICPLGDAAAWPVASAIRHFRDEFQWHIDN 428 >gi|330503267|ref|YP_004380136.1| NADH-quinone oxidoreductase subunit F [Pseudomonas mendocina NK-01] gi|328917553|gb|AEB58384.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina NK-01] Length = 448 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 164/413 (39%), Positives = 230/413 (55%), Gaps = 7/413 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + + + K L E + I+ VK SGL+GRGGAGF TG+KW MP S Sbjct: 31 QPVWLEEYQQKNGYAAARKALTEMAQADIVQTVKESGLKGRGGAGFPTGVKWGLMPADES 90 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 91 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAA 150 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 151 NLNRAIDEAKAAGLLGKNIFGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 210 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ +G WY G R + GTKL SG V P Sbjct: 211 PFPAAVGVWGKPTCVNNVETLCNVPAIIGQGVDWYKGLARPGSEDHGTKLMGFSGKVKNP 270 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 271 GLWELPFGITARELFEDYAGGMRDGYK-LKCWQPGGAGTGFLLPEHLE-AQMYAGGIGKV 328 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L + Sbjct: 329 GTRMGTGLALAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKILRALERKQGT 388 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +I L + + G+T CA A P+ IK FR E + Q Sbjct: 389 AEDIQTLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFREEFEAGVAQVATTP 441 >gi|293609135|ref|ZP_06691438.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|292829708|gb|EFF88070.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024] gi|325121085|gb|ADY80608.1| NADH dehydrogenase I chain F [Acinetobacter calcoaceticus PHEA-2] Length = 443 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 164/402 (40%), Positives = 233/402 (57%), Gaps = 7/402 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L +++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYEALEGYAGFKKALGMKPAEVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ D+ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGENILGSGWNFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE H GG+R G L A +PGG+S LPA + MD D + + GS LGT Sbjct: 272 FGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI-DLPMDADTIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L E+++ + G+T CA A P+ G +K+FR E ++ Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRGEFEAKVTN 431 >gi|311108352|ref|YP_003981205.1| NAD-dependent formate dehydrogenase subunit beta [Achromobacter xylosoxidans A8] gi|310763041|gb|ADP18490.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter xylosoxidans A8] Length = 523 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 153/414 (36%), Positives = 232/414 (56%), Gaps = 6/414 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL D + G + + L I++E+ ASGLRGRGGA F Sbjct: 101 LKQQERLTFARVGVTDPLSLQDYAAHGGLQGLQRALTMEPGQIVDEMVASGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + D Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVAGTPGD-QKYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + ++L+AA+ + G LG + G D+ V GAGAYICGEET+LL Sbjct: 220 GYIYVRSEYPQAIDTLEAAIARARSVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL +GA++Y +G + GT Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE++ ++ +L+ GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKHGGLVEKAFGLSLRDLLYGFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D S D+ + F ESCG+CTPCR G+ + Sbjct: 398 DVPLDYEAYIQISAMVGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVKGIA-QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++V G +++++ LL ++ + G ++CALG A +P+ + +F Sbjct: 458 ETIDKIVAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHFPQDF 511 >gi|256422831|ref|YP_003123484.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] gi|256037739|gb|ACU61283.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM 2588] Length = 426 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 165/430 (38%), Positives = 252/430 (58%), Gaps = 9/430 (2%) Query: 1 MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 M+T++ + N+Y + +L + G + + K+ + V+ S L+GRGGA Sbjct: 1 MMTERP-LTRNIYPDRPPMNLKEYEKTGGYAALRKVCSTMDPAALQKLVQDSNLKGRGGA 59 Query: 59 GFSTGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 GFSTGMKWS +P + P YL+ NADE EPGT KDR ++ PH LIEG ++A++AI Sbjct: 60 GFSTGMKWSLIPMDDKATHPKYLIANADEMEPGTFKDRLLLEGNPHQLIEGMILAAYAIQ 119 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A A++++R + ++ ++ E Y +G LG++ G+ +++ +H G G Y+CGEET Sbjct: 120 ADIAYVFLRWAYHEAATLIRKSIQEAYDAGYLGTDILGSGFHLEMYLHTGVGRYMCGEET 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL +LEGK+ PR KPPFP GL+G PT VNNVE++ VP I+ G +W+ G ++ Sbjct: 180 ALLNALEGKRATPRAKPPFPQISGLFGKPTIVNNVETLCCVPHIVNNGVAWFKGLSYSDD 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTK++ +SG V P E M +T ELIE+H GG++ G++ L V+PGG+S L Sbjct: 240 GGTKVYGVSGKVKRPGAWELPMGVTMRELIEEHAGGMKAGYE-LKGVLPGGASTDFLTTQ 298 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + MDY + GS LGT +IV+D T + + L F+ ESCG CTPCREG Sbjct: 299 HL-DIKMDYKSVAAAGSRLGTGTMIVLDSGTCPVGFVHNLQHFFAQESCGWCTPCREGLP 357 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415 W+ +++ L KG + +I+LL ++ + G T CAL A P+Q +K F E+ Sbjct: 358 WVEKILLALEKGDGKPEDIELLQMHTQFLGPGNTFCALAPGAMEPLQSALKYFMDDFEKH 417 Query: 416 IDQYHRCNFQ 425 + ++ +C + Sbjct: 418 V-EHKKCPYN 426 >gi|317404656|gb|EFV85052.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter xylosoxidans C54] Length = 523 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 150/414 (36%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G + + L I+ E+ SGLRGRGGA F Sbjct: 101 LKQQERLTFARVGVIDPLSLQDYAAHGGLQGLKRALAMEPAAIVEEMVTSGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWKTVLGSPAD-RKYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA++ G LG + G D+ V GAGAYICGEET+LL Sbjct: 220 GYIYVRSEYPHAIATLEAAIERARGVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S+A VP IL +GA++Y +G + GT Sbjct: 280 ESIEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ ++ +L+ GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLSLRDLLYTFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D S D+ + F ESCG+CTPCR G+ + Sbjct: 398 DVPLDYEAYVQISAMIGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVKGIA-QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ G +++++ LL ++ + G ++CALG A +P+ + +F Sbjct: 458 ETIDKITAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHFPQDF 511 >gi|269837267|ref|YP_003319495.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] gi|269786530|gb|ACZ38673.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] Length = 575 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 151/426 (35%), Positives = 229/426 (53%), Gaps = 7/426 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 L Q R+ +G+ +S+ D ++RG + K + + + ++NEVK S +RGRGGA Sbjct: 136 FLAGQRRVLMADWGIIDPESIEDYIARGGYQAWIKAIFDMTPEEVVNEVKISNVRGRGGA 195 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF G+KW + + P Y++ N+ E EP KDR ++ PH ++EG +I +A+ Sbjct: 196 GFPAGIKWESGRRTQA-WPKYVIANSHEGEPNVFKDRRLIESNPHLVLEGIMIGCYALET 254 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + YV GE E + AVD+ Y GLLG N G I V G GAYICGE +A Sbjct: 255 PHGYNYVGGEHKLAIERFRKAVDQAYELGLLGDNVLGSGVSCHIRVRTGGGAYICGEGSA 314 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+ G++GQPR KPP G++ PT +NN E+ A +P I+R G +WY+ G E + Sbjct: 315 LMYSVMGQRGQPRTKPPRSVEEGVWKRPTVLNNTETFANIPGIIRNGGAWYAAMGTEKST 374 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL ++ G V VE M + E+I GG+R G+ V GG S L Q Sbjct: 375 GTKLITMQGPVQRIGVVEIEMGMPMREVIFGLFGGMREGY-VFKGVQTGGVSAGPLREDQ 433 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +D+D L +G LG+ +V D+S + L F ++ESC +C PCR G Sbjct: 434 L-DVPVDFDSLTPLGGMLGSGGFVVFDQSVCAVDFARYLQEFNRYESCAKCVPCRLGNPA 492 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ ++ER+ G A++ ++ L+ E S+ I ++C LG A P G+I+ F I+ Sbjct: 493 LVEIIERIRLGQARQGDLALIEETSRPIIDLSLCGLGQVAPMPTLGMIRAFPEDFAAHIE 552 Query: 418 QYHRCN 423 + HRC Sbjct: 553 E-HRCP 557 >gi|296130546|ref|YP_003637796.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM 20109] gi|296022361|gb|ADG75597.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM 20109] Length = 444 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 199/402 (49%), Positives = 247/402 (61%), Gaps = 5/402 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + L+ + G + + K L ++ VK SGLRGRGGAGF TGMKW F+P Sbjct: 14 ADRSWKLARYEADGGYRGLRKALTMAPADVVTTVKDSGLRGRGGAGFPTGMKWGFLP-AP 72 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 P YLVVNADESEPGTCKD +M P LIEG +I S+AIG H AFIYVRGE + Sbjct: 73 DGGPRYLVVNADESEPGTCKDIPLMMASPQELIEGVIITSYAIGCHHAFIYVRGEVVHVY 132 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L AV E +G LG++ G+D++I VH GAGAYICGEETALL+SLEG +GQPRLK Sbjct: 133 RRLLEAVREAREAGYLGTDILGSGFDLEITVHAGAGAYICGEETALLDSLEGLRGQPRLK 192 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLY PT VNNVES+A VP I+ GA W++ G E + G LFS+SGHV P Sbjct: 193 PPFPAVAGLYARPTVVNNVESVASVPGIIVGGADWFTSMGTERSAGHGLFSLSGHVTRPG 252 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT EL++ G L PGGSS P A + +DY+ + + G Sbjct: 253 QYEAPLGITLRELLDMAGG--VREGHELKFWTPGGSSTPIFTAEHL-DVPLDYESVGKAG 309 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T ++KA+ R FYKHESCG+CTPCREGT W+ +VM RL G Sbjct: 310 SMLGTRALQIFDETTSVVKAVSRWIQFYKHESCGKCTPCREGTFWLAQVMARLEAGQGTS 369 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +IDLL ++ NI GR CALGD A P+ I+ FR E Sbjct: 370 ADIDLLLDLCDNILGRAFCALGDGATSPVTSAIQYFREEFEA 411 >gi|284042620|ref|YP_003392960.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684] gi|283946841|gb|ADB49585.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684] Length = 436 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 178/402 (44%), Positives = 254/402 (63%), Gaps = 5/402 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++ +RG + +++K L + ++ + SGLRGRGGAGF+ G K SF+P+ D Sbjct: 16 DTIEVYKARGGYQSLEKALRMTPEEVLQNLLDSGLRGRGGAGFAMGKKVSFLPRGSMD-- 73 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLV NADESEPGT KDR++M+ PH LIEG +IA++A GA+ +FIY+RGE+ + L+ Sbjct: 74 KYLVCNADESEPGTFKDRELMQKSPHMLIEGMIIAAYAAGANRSFIYIRGEYELQAMKLE 133 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 AA+ E +G LG N + +I+H GAGAYICGEET LL+SLEGK+G PRLKPPFP Sbjct: 134 AALHEAREAGYLGENILGSDHSQSLILHRGAGAYICGEETGLLDSLEGKRGNPRLKPPFP 193 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 AN GLY PT +NNVE++A VP I++ Y+ G EN+ GTKL SISG+V P E Sbjct: 194 ANQGLYQGPTLINNVETLATVPHIIKMTGVEYAKLGVENSAGTKLISISGNVQRPGNYEI 253 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + + +++ GG G + PGGSS P L + D+D + + GS LG Sbjct: 254 ELGMKSYDIVYGLAGGPEPG-RRVKFWFPGGSSSPVLKPEDL-DLPYDFDSMAKAGSMLG 311 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + A+IV+D S ++ +L+ FY+HESCG+CTPCREGT W ++++ER+ KG ++D Sbjct: 312 SGAIIVVDDSVPVMDVALKLAKFYRHESCGKCTPCREGTNWTVKMLERIDKGEGTPMDLD 371 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ V I G +C LGDA A P+ ++ FR EE +++ Sbjct: 372 IIASVQDQIMGNCLCVLGDAMAMPLSSMVAKFRDEFEEYMEE 413 >gi|194374217|dbj|BAG57004.1| unnamed protein product [Homo sapiens] gi|221045632|dbj|BAH14493.1| unnamed protein product [Homo sapiens] Length = 363 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 232/352 (65%), Positives = 281/352 (79%), Gaps = 1/352 (0%) Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 M K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGE Sbjct: 1 MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60 Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 F E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G Sbjct: 61 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 VN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+ Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 352 >gi|146305428|ref|YP_001185893.1| NADH dehydrogenase (quinone) [Pseudomonas mendocina ymp] gi|145573629|gb|ABP83161.1| formate dehydrogenase beta subunit [Pseudomonas mendocina ymp] Length = 523 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 148/416 (35%), Positives = 220/416 (52%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL D ++ + + + L + I+ EV SGLRGRGGA F Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + ++ Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWRTVLGCQAE-QKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L + A+G LG + G + + GAGAYICGEETALL Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S+A VP IL +G ++Y +G + GT Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E++ IT EL+ ++ GG G + AV GG LP Q Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGRP-IRAVQVGGPLGAYLPESQ-F 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG ++V D + D+ F ESCG+CTPCR G+ Sbjct: 398 DTPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457 Query: 360 RVMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ +++ Q I+LL + + G ++CALG +P+ I +F Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVLSAINHFPEDF 513 >gi|330810467|ref|YP_004354929.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|9719442|gb|AAF97802.1|AF281148_6 NADH dehydrogenase I subunit F [Pseudomonas fluorescens] gi|327378575|gb|AEA69925.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 451 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 164/402 (40%), Positives = 230/402 (57%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + ++ + K + +D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 34 LDEYQAKNGYAAARKAFSDMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESINIR 93 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EP T KDR +M PH LIEG +I++ A+ + +I++RGE+ + L Sbjct: 94 YLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNR 153 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 154 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVE 255 VG++G PT VNNVE++ VP I+ G WY R+ + GTKL SG V P E Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWE 273 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 +T EL E + GG+R G+ L PGG+ L + A M G+ ++G+ + Sbjct: 274 LPFGVTGRELFEDYAGGMRDGYK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKVGTRM 331 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L G Q +I Sbjct: 332 GTGLAMAVDDSVNMVSLLRNMEEFFSRESCGFCTPCRDGLPWSVKLLRALENGEGQAGDI 391 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L + + G+T CA A P+ IK FRP E I Sbjct: 392 ETLLGLVGFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433 >gi|295798105|emb|CAX68924.1| NADH-quinone oxidoreductase F subunit (51 kDa) [uncultured bacterium] Length = 423 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 191/401 (47%), Positives = 260/401 (64%), Gaps = 5/401 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 LS + G + + K+L E + EVKAS LRG GGAGFSTG KWSF+P+ Sbjct: 17 LSGFLREGGYKSAAKVLKEMKPADVEAEVKASNLRGLGGAGFSTGTKWSFVPRNTGKPI- 75 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLVVNADE EPGT KD+ I+ PH LIEG +IAS+A+G H AFIY+RGE+ ++ ++++ Sbjct: 76 YLVVNADEGEPGTFKDKYIIERVPHLLIEGIIIASYAVGIHKAFIYIRGEYEKQYQAIKE 135 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E Y LG+ + + +DI++H GAGAYICGEET+LLESLEGKKG PRLKPPFPA Sbjct: 136 ALREAYDHKFLGTQIFGMDFQLDIVLHRGAGAYICGEETSLLESLEGKKGYPRLKPPFPA 195 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+GCPT +NNVE+++ +P+I+ +GASW++ G E + G +LF +SGHV P E Sbjct: 196 IVGLFGCPTVINNVETLSYLPSIIEKGASWFAAMGTEKSGGMRLFGVSGHVVKPGVYELP 255 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + T E+I H GGI L AV+PGG S + ++ MD+D LK G+ G+ Sbjct: 256 IKTTLREIIYHHAGGIP-NGKKLKAVVPGGLSAAIMTPDEI-DVSMDFDALKAKGTMGGS 313 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +IVMD + +++A+ FY HESCGQC+PCREGTGW+ R++ R+V G + ++ID Sbjct: 314 GGIIVMDETVSMVEALRITMQFYAHESCGQCSPCREGTGWIYRILNRIVAGKGKLQDIDN 373 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L ++ + G TICAL D A +K FR EE I Sbjct: 374 LLDIGAYLGGTTICALADGAQMTFLSYLKKFRSEFEEFIQN 414 >gi|87120636|ref|ZP_01076530.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121] gi|86164279|gb|EAQ65550.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121] Length = 527 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 152/414 (36%), Positives = 224/414 (54%), Gaps = 5/414 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + SL+D S +D + + L+ +++EVK SGLRGRGGA F Sbjct: 107 LKKQQRLTFARAGIIDPVSLTDYKSTHGYDGLVRALDMSSQALVDEVKDSGLRGRGGAAF 166 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y++ NADE + GT DR M +P LIEG IA A+ A Sbjct: 167 PTGIKWQTVLNTPA-AQKYIICNADEGDSGTFADRLQMEADPFALIEGMTIAGLAVEATQ 225 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++ L A+ +G LG N G + V GA AYICGEETAL+ Sbjct: 226 GYIYLREEYPHAKDILNEAIQVAEQNGYLGENILDSGKTFHLEVRIGAKAYICGEETALM 285 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S++ + IL +G +Y FG +RGT Sbjct: 286 ESLEGKRGMVRPKPPLPAIEGLFGQPTVVNNVLSLSTIAIILAKGGKFYQEFGMGRSRGT 345 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ YP VE + IT EL+ GG R G + +V GG LP Q Sbjct: 346 MPFQLAGNLKYPGLVETAFGITMKELLFDFGGGTRSGRP-MRSVQSGGPLGAYLPESQWH 404 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ L G+ LG ++ D + D+++ F ESCG+CTPCR G+ + Sbjct: 405 -LEMDYEALSAEGAVLGHGGLVAFDDTVDMLEQARFSLEFCVEESCGKCTPCRIGSTRGV 463 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 V++R+ + ++LL ++ + ++CA+G +P+Q +++F + Sbjct: 464 EVIDRIRADENRDDNLELLEDLCDTMVSGSLCAMGGMTPFPVQSALEHFGEDFQ 517 >gi|297203644|ref|ZP_06921041.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] gi|197717222|gb|EDY61256.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC 29083] Length = 533 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 152/413 (36%), Positives = 220/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + S D + G + LE ++ EV ASGLRGRGGAGF Sbjct: 105 LARQNRVTFARVGVTDPLSAEDYEAHGGLAGLRAALELAPADVVAEVTASGLRGRGGAGF 164 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + C+D ++ NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 165 PAGIKWKTVL-DCADELKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGASE 223 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ +++ A+ G LG D D+ V GAGAYICGEET++L Sbjct: 224 GYLYIRSEYPDAVATMRRAIGVAREHGWLGKGILGSALDFDLHVRVGAGAYICGEETSML 283 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV ++A VP ++ +GA Y G E +RGT Sbjct: 284 ESLEGKRGMVRAKPPIPAIEGLFGRPTVVNNVLTLATVPVVMAKGAQAYERLGVERSRGT 343 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++F + G++ + VE + IT ELIE++ GG G + GG LP M Sbjct: 344 QVFQLGGNIAHGGIVETAFGITLRELIEEYGGGTHSGRP-VRTAQVGGPLGAYLPES-MF 401 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ G+ +G V+V D S D+ F ESCG+CTPCR G + Sbjct: 402 DLPMDYEAFAAAGAMVGHGGVVVFDDSVDMAAQARFAMEFCAEESCGKCTPCRVGAVRGV 461 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+V G + + LL ++ + ++CA+G P++ + +F Sbjct: 462 EVIDRIVAGTHRDENLALLEDLCDLMTEGSLCAMGGLTPLPVRSALTHFPDDF 514 >gi|114705203|ref|ZP_01438111.1| putative nad-dependent formate dehydrogenase beta subunit protein [Fulvimarina pelagi HTCC2506] gi|114539988|gb|EAU43108.1| putative nad-dependent formate dehydrogenase beta subunit protein [Fulvimarina pelagi HTCC2506] Length = 517 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 154/414 (37%), Positives = 217/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F SL D + G + + +E G + I+ EVK SGLRGRGGAG Sbjct: 97 FLKGQTRLTFKRCGVTDPLSLEDYEAHGGLLGLRRAIEMGSEAIVEEVKESGLRGRGGAG 156 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + K Y+V NADE + GT DR IM +P LIEG IA+ A GA Sbjct: 157 FPTGIKWETVMKTEGP-KKYIVANADEGDSGTFADRMIMEGDPFCLIEGMTIAAVATGAT 215 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ ++ A+ G LG S + D+ V GAGAY+CGEET+L Sbjct: 216 KGYIYLRSEYPVAIRVMREAIKRAEDFGWLGISVLGSAHAFDLEVRVGAGAYVCGEETSL 275 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L+SLEGK+GQ R KPP PA GL+G PT +NNV S+A P IL +GA Y FG +RG Sbjct: 276 LDSLEGKRGQVRFKPPLPAIKGLFGRPTVINNVISLASTPEILAKGAKVYKDFGIGRSRG 335 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E +T E++E GG + AV GG P + Sbjct: 336 TIPLQIAGNVKHGGLYEVPFGLTLGEIVEGIAGGT-NSGKPVRAVQVGGPLGAYFPRS-L 393 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ E +G A +++ D + D++K F ESCG+CTPCR G Sbjct: 394 FDTPFDYEAFAEKKGLIGHAGIVIFDDTVDMMKQARFAFEFCAVESCGKCTPCRIGAVRG 453 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ME+++ G ++L+ ++ +E ++CALG +P+ I++F Sbjct: 454 LETMEKIIAGDNAAESLELVEDLCNTMEFGSLCALGGFTPYPVMSAIRHFPEDF 507 >gi|294649464|ref|ZP_06726888.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus ATCC 19194] gi|292824634|gb|EFF83413.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus ATCC 19194] Length = 442 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 159/403 (39%), Positives = 229/403 (56%), Gaps = 6/403 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L ++ +KA+ ++GRGGAGF G+KWS M + P YL Sbjct: 33 DDYEALEGYAGFKKALSMPPKDVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 93 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 153 EQIRAKGYLGENILGTGWNFEMHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY + GTK++ SG V +P E Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELP 272 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE H GG+R G L A +PGG+S L A + MD + + + GS LGT Sbjct: 273 FGTTAREVIEDHAGGMRDGL-TLKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ A L F+ ESCG CTPCR+G W ++ ++ L G + +I Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQH 390 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 L E++K + G+T CA A P+ G +K FR E +++ + Sbjct: 391 LSELTKKLWIGKTFCAHAPGAMEPLMGALKYFRHEFEAKVNTH 433 >gi|325291004|ref|YP_004267185.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271] gi|324966405|gb|ADY57184.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271] Length = 427 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 150/411 (36%), Positives = 229/411 (55%), Gaps = 6/411 (1%) Query: 7 RIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 +I ++ +G ++ S+ + ++ G ++ + K + + I E+K + L GRGGA + TG+K Sbjct: 5 KILSSRFGKIKPDSVEEYVANGGYEGLKKAITQQHLDTIEEIKKANLFGRGGAAYPTGIK 64 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W + Y+V NADE EPGT KDR+IM +P LIEG I ++ G+ FIY Sbjct: 65 WEQAYAIPG--TKYIVCNADEGEPGTIKDREIMSRDPLMLIEGMTIGAYLFGSSEGFIYC 122 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 RGE+ + ++ L++A+ A+G LG N G + DI V GAGAY+CGE TAL ES+EG Sbjct: 123 RGEYGKIQKLLRSAIANAKAAGYLGDNILGTGLNFDIKVVSGAGAYVCGENTALAESIEG 182 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K G+PR KPP+ N GL PT +NNVE+ A +P I++ G + +G E + GTKL + Sbjct: 183 KTGRPRRKPPYLKNAGLNLKPTVLNNVETYACIPYIVKEGGEKFLSYGTEFSGGTKLMCL 242 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 G V E T ELI+ GG+ L V GGSS C P M + Sbjct: 243 IGDVKNRGVYEVPFGTTVRELIDNCGGGMA-DGKKLKFVHLGGSSGSCFPES-MLDTKIC 300 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 Y+ L++ G LG+ V+V+ +++ + + F++ ESCG+CTPCREG M+ ++E+ Sbjct: 301 YNDLRKAGISLGSGVVLVVSEDQSVVEYLKAVMEFFEEESCGKCTPCREGNQRMVEILEK 360 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 L +G +I L +++ + + C LG +A P LIK+F + Sbjct: 361 LTEGKGTAEDIKRLKHLAQIMRDTSFCGLGQSAPVPALTLIKHFEDEFKAY 411 >gi|307131810|ref|YP_003883826.1| NADH:ubiquinone oxidoreductase subunit F [Dickeya dadantii 3937] gi|306529339|gb|ADM99269.1| NADH:ubiquinone oxidoreductase, chain F [Dickeya dadantii 3937] Length = 449 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 168/409 (41%), Positives = 237/409 (57%), Gaps = 7/409 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D ++ VK +GLRGRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYAGAQKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I ++A+ A+ +I++RGE++ Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAA 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 NLRRAIAEATEAGLLGKNIMGTGFNFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G +G PT VNNVE++ VP I+ G WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 +I+ L ++ + + G T CA A P+Q IK FR E I + Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429 >gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 562 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 144/423 (34%), Positives = 243/423 (57%), Gaps = 7/423 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58 + Q ++ + + ++ + + ++ G + + D I + II+E+ SGLRGRGG Sbjct: 140 FFSRQRKVVLDRFEEMEPERIESYLAAGGYQALLDCIWHRQPAAIIDEISKSGLRGRGGG 199 Query: 59 GFSTGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 G+ G+KW+ + K Y++ NADE +PG DR ++ PH ++EG IA++A+ Sbjct: 200 GYPAGLKWATVAKAALPPGGRKYVICNADEGDPGAFMDRSVLESAPHRVLEGMAIAAYAV 259 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEE 175 GA ++YVR E+ L+ A+ + GLLG +D + + GAGA++CGEE Sbjct: 260 GADFGYLYVRAEYPLAVARLKKAISQAEKLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEE 319 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EGK+GQPR +PP+PA G+ GCPT +NNVE++A + I+ RG +W++ G E Sbjct: 320 TALVASIEGKRGQPRPRPPYPAEYGIKGCPTLINNVETLANITAIINRGGAWFATLGSEQ 379 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+F+++G V +E M IT E++E+ GG G ++ AV GG S C+PA Sbjct: 380 SKGTKVFALAGKVVNTGLIEVPMGITLHEIVEEMGGGTPAGG-SIKAVQTGGPSGGCIPA 438 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +DY+ L+ GS +G+ +I+MD + ++ F ESCG+C PCR GT Sbjct: 439 AH-FQLPVDYESLQAEGSIMGSGGLIIMDEGSGMVDVARFFMEFCVDESCGKCVPCRVGT 497 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 ++ ++E++ G + ++ L E+ ++ ++C LG +A P+ +K FR E Sbjct: 498 KQILLLLEKIGAGAGGQDDLARLQELCAMVQQGSLCGLGMSAPNPVLSTLKFFRHEYEAL 557 Query: 416 IDQ 418 +++ Sbjct: 558 LEK 560 >gi|77459829|ref|YP_349336.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf0-1] gi|77383832|gb|ABA75345.1| NADH dehydrogenase subunit F [Pseudomonas fluorescens Pf0-1] Length = 451 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 163/402 (40%), Positives = 231/402 (57%), Gaps = 7/402 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + ++ + K +D I+ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 34 LDEYQAKNGYAAARKAFADMDQDAIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESINIR 93 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EP T KDR +M PH LIEG +I++ A+ + +I++RGE+ + L Sbjct: 94 YLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNR 153 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 154 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVE 255 VG++G PT VNNVE++ VP I+ G WY R+ + GTKL SG V P E Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWE 273 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 +T EL E + GG+R G+ L A PGG+ L + A M G+ ++G+ + Sbjct: 274 LPFGVTGRELFEDYAGGMRDGFK-LKAWQPGGAGTGFLLPEHL-DAQMYAGGIAKVGTRM 331 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ + +G Q +I Sbjct: 332 GTGLAMAVDDSVNMVSLLRNMEQFFARESCGFCTPCRDGLPWSVKLLMAIEQGRGQPGDI 391 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + L + + G+T CA A P+ IK FRP E I Sbjct: 392 ETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433 >gi|269218342|ref|ZP_06162196.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212201|gb|EEZ78541.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 442 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 188/400 (47%), Positives = 245/400 (61%), Gaps = 6/400 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L G ++ + K G + +K SGL GRGGAGF TG+KWSF+P Sbjct: 23 SWTLGAYRDAGGYEGLAKAWSYGPGELTQLIKDSGLAGRGGAGFPTGLKWSFLP-PPDGG 81 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YLVVNADESEPGTCKD + PH LIEG I A+G H F+Y+RGE + L Sbjct: 82 PRYLVVNADESEPGTCKDVPALMGNPHALIEGMAICLLAVGGHHGFVYLRGEVVHVYRRL 141 Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 AAV + +GL+G YD++I VH GAGAYICGEETALL+SLEG++GQPRLKPP Sbjct: 142 MAAVRQAREAGLIGKAMGPDGDYDIEITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 201 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA GLY PT +NNVE+I+ VP I+R G W+ G E+ +G FS+SGHV P Sbjct: 202 FPAAEGLYARPTVINNVETISSVPGIVRNGVEWFHAMGTESAKGHGFFSLSGHVKNPGQY 261 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + IT L++ G L GGSS P Q+ +DY+ ++E GS Sbjct: 262 EAPLGITARTLLDLAGG--IRPGHELKFWAVGGSSAPLFTPEQL-DVPLDYNSVREAGSM 318 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 L T A++V D + +++ I R + FY+HESCG+CTPCREGT WM +V+ RL G + + Sbjct: 319 LATRAIMVFDETVSVVRVISRWTDFYQHESCGKCTPCREGTYWMRQVVHRLEAGRGRPGD 378 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +DLLYE++ NI GR+ CALGDAAA P++ I+ FR E Sbjct: 379 VDLLYEIASNIAGRSFCALGDAAATPVKSGIELFREEFEA 418 >gi|226953548|ref|ZP_03824012.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244] gi|226835726|gb|EEH68109.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244] Length = 442 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 159/403 (39%), Positives = 228/403 (56%), Gaps = 6/403 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L ++ +KA+ ++GRGGAGF G+KWS M + P YL Sbjct: 33 DDYEALEGYAGFKKALSMPPKDVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 93 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 153 EQIRAKGYLGENILGTGWNFEMHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY + GTK++ SG V +P E Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELP 272 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE H GG+R G L A +PGG+S L A + MD + + + GS LGT Sbjct: 273 FGTTAREVIEDHAGGMRDGL-TLKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ A L F+ ESCG CTPCR+G W ++ ++ L G + +I Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQH 390 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 L E++K + G+T CA A P+ G +K FR E ++ + Sbjct: 391 LSELTKKLWIGKTFCAHAPGAMEPLMGALKYFRHEFEAKVSTH 433 >gi|227823604|ref|YP_002827577.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium fredii NGR234] gi|227342606|gb|ACP26824.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium fredii NGR234] Length = 518 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 152/414 (36%), Positives = 222/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F SL D G ++K + I+ EV SGLRGRGGAG Sbjct: 98 FLKNQTRLTFARCGVTDPLSLDDYRGHGGLRGLEKAVSMAPAAIVAEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLEAQ-GAQKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ ++ AA++ A+G+LG S + D+ V GAGAY+CGEET+L Sbjct: 217 KGYVYTRSEYPHAIAAMSAAIEIARAAGVLGTSVLGSAHAFDMEVRTGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGAAYYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T E+++K GG G + AV GG P + Sbjct: 337 TIPIQIAGNVKHGGLYETAFGLTLGEIVDKIGGGTASGRP-VKAVQVGGPLGAYFPRS-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V +R+ GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVTSAMTHFPEDF 508 >gi|226327878|ref|ZP_03803396.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198] gi|225203582|gb|EEG85936.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198] Length = 404 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 162/385 (42%), Positives = 221/385 (57%), Gaps = 6/385 (1%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + EVK +GL+GRGGAGFSTG+KWS MPK S Y++ NADE EPGT KDR + Sbjct: 1 MSPTEVTTEVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYILCNADEMEPGTYKDRLL 60 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 M PH LIEG +I + A+ A+ +I++RGE+I + L+ A++E A+G LG N G Sbjct: 61 MEELPHLLIEGMIIGAHALKAYRGYIFLRGEYIEAAKHLRHAIEEAKAAGFLGKNIFGSG 120 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA G +G PT VNNVE++ Sbjct: 121 IDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCN 180 Query: 217 VPTILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 VP I+ G WY G + GTKL SG V +P E T E++E + GG+R Sbjct: 181 VPAIIEHGKDWYIGLSEGKSPDAGTKLMGFSGRVKFPGLWELPFGTTAREILEDYAGGMR 240 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G L A PGG+ L + MD+ + + GS LGTA + +D +++ Sbjct: 241 DGLK-LKAWQPGGAGTDFLTEDHL-DLPMDFGTIAKAGSRLGTALAMAVDNEINMVSLTR 298 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393 L F+ ESCG CTPCR+G W + ++ + G + +I+ L + +++ G T CA Sbjct: 299 NLEEFFARESCGWCTPCRDGLPWSVEILRAIENGKGRPGDIETLEHLCRSLSPGHTFCAH 358 Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418 A P+Q IK FR E I Q Sbjct: 359 APGAVEPLQSAIKYFREEFEAGIIQ 383 >gi|330501361|ref|YP_004378230.1| NADH dehydrogenase [Pseudomonas mendocina NK-01] gi|328915647|gb|AEB56478.1| NADH dehydrogenase [Pseudomonas mendocina NK-01] Length = 523 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 148/416 (35%), Positives = 220/416 (52%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL D ++ + + + L + I+ EV SGLRGRGGA F Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + ++ Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 161 PTGIKWRTVLGCQAE-QKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L + A+G LG + G + + GAGAYICGEETALL Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S+A VP IL +G ++Y +G + GT Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E++ IT EL+ ++ GG G + AV GG LP Q Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGRP-IRAVQVGGPLGAYLPESQ-F 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG ++V D + D+ F ESCG+CTPCR G+ Sbjct: 398 DTPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457 Query: 360 RVMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ +++ Q I+LL + + G ++CALG +P+ I +F Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVMSAINHFPEDF 513 >gi|262275220|ref|ZP_06053030.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia hollisae CIP 101886] gi|262220465|gb|EEY71780.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia hollisae CIP 101886] Length = 530 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 151/415 (36%), Positives = 229/415 (55%), Gaps = 7/415 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L QDR+ F + + + D S+G +D + + L +++EVKASGLRGRGGA F Sbjct: 106 LKRQDRLTFERVGVVDPLDVEDYCSKGGFDGLKRALTMTTQEMLDEVKASGLRGRGGAAF 165 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S Y++ NADE + GT DR +M +P TLIEG +I + ++GA Sbjct: 166 PTGIKWQTVADQPSG-QKYVICNADEGDSGTFADRMLMEGDPLTLIEGMIICALSVGASQ 224 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y R E+ + A++ YA+G LG + G D+ + GAGAYICGEET+L+ Sbjct: 225 GYVYTRSEYPNACKIFTKAIENAYAAGYLGPDICGSGKHFDLELRMGAGAYICGEETSLM 284 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP I +GA Y FG+ + GT Sbjct: 285 ESLEGKRGLVRNKPPLPAIEGLFGRPTVINNVISLASVPIIFSKGADHYKDFGQGRSLGT 344 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ P E + +T EL+ GG + G L AV GG + A + Sbjct: 345 MPIQLAGNIKRPGLFELAFGVTIRELLFDFGGGSKTGNP-LKAVQIGGPLGAYI-AEKDW 402 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ L G+ LG ++ D TD+ + F ESCG+CTPCR G + Sbjct: 403 DTELDYEHLAARGAMLGHGGIVAFDEQTDMSQMARFAMEFCALESCGKCTPCRIGAVRGV 462 Query: 360 RVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+++L++ G + LL ++ + +E ++CA+G +P++ +K+F Sbjct: 463 EVIDQLLRTTGDEKSAHKALLDDLCETMEQGSLCAMGGMTPFPVKSALKHFPDDF 517 >gi|302037260|ref|YP_003797582.1| formate dehydrogenase subunit beta [Candidatus Nitrospira defluvii] gi|300605324|emb|CBK41657.1| Formate dehydrogenase, beta subunit [Candidatus Nitrospira defluvii] Length = 498 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 149/418 (35%), Positives = 225/418 (53%), Gaps = 7/418 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R F N + +L + +RG ++ L G D II E++ S LRGRGGA Sbjct: 86 FLAQQTRFTFANFGETEPLALDEYQARGGLSGLETALRIGPDAIIEELRVSQLRGRGGAA 145 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F KW + + Y+V NADE + GT DR I+ +P L+EG +I + AIGA Sbjct: 146 FPVWNKWK-VAQQARADDKYVVANADEGDAGTYCDRMILEGDPFRLLEGMLICARAIGAG 204 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y R E+ ++L+AA+ + + LL + G I V GAG+Y+CGEETALL Sbjct: 205 RGYVYCRQEYPAAAKTLRAAIQKADEAELLELD---GEPFPIEVVEGAGSYVCGEETALL 261 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R +PP+PA GLYG PT V+NV + A +P IL RG +W++ G + +RGT Sbjct: 262 ESLEGKRGVVRARPPYPAQSGLYGRPTIVSNVLTFASIPNILSRGGAWHAALGTKQSRGT 321 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + G V +P VE ++ +++E+ GG+ AV GG PA QM Sbjct: 322 MALQLGGRVKHPGLVEVPFGLSLHQVLEQFGGGMA-PGSRFKAVQVGGPLGSLFPASQM- 379 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + YD + G+ LG ++V D TD++ F ESCG+CTPCR G+ Sbjct: 380 DIPICYDAFAKAGAVLGHGGIVVYDHETDMVDLARHFMAFTADESCGKCTPCRIGSVRGR 439 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ER+ G ++ LL+++ ++ ++CALG A +P+ I++F ++ Sbjct: 440 EILERIQSGSGTIEDLALLHDLGDTMKVASLCALGGRAPYPVLTAIEHFPAEFRSKLR 497 >gi|262195156|ref|YP_003266365.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM 14365] gi|262078503|gb|ACY14472.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM 14365] Length = 445 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 202/437 (46%), Positives = 276/437 (63%), Gaps = 30/437 (6%) Query: 5 QDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q ++ T +G ++++ + G + + L R+ I+ EVKAS LRGRGGAGF TG Sbjct: 6 QTKVVTQHFGKDEARTIAGYETLGGYAVAKRALGMAREQILAEVKASNLRGRGGAGFPTG 65 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW F+P D LV NADESEPGTCKDR+++ +PH LIEG ++++ A+GA +I Sbjct: 66 VKWGFVPAGSKDVH--LVCNADESEPGTCKDRELLFWDPHRLIEGMIVSAHALGAVHNYI 123 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE +RE LQ AV E Y G LG N G + VH GAGAYICGEETALL SL Sbjct: 124 YIRGEMMREVLVLQDAVREAYERGYLGDNIFGTGKACHLTVHRGAGAYICGEETALLNSL 183 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTK 240 EG +GQPRLKPPFPA GL+G PT VNNVE++ VPTI+ +G +W++ G E + GT+ Sbjct: 184 EGLRGQPRLKPPFPAVKGLFGNPTVVNNVETLMNVPTIIDKGGAWFAALGPEGGRSGGTR 243 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 + +SGHV P E M+ITF++LI++ CGG+ G + AVIPGGSS+P L A ++ Sbjct: 244 IVCVSGHVEKPGVYELPMTITFNQLIDEVCGGVWKGRK-VKAVIPGGSSMPPLTAEEL-D 301 Query: 301 AIMDYDGL----------------------KEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +++D L + + + G+ ++VMD TD++KA WR+ Sbjct: 302 VPIEFDALMTDERIRPVEVLRGQQFDMGGGRALRTMAGSGGIVVMDDHTDVVKACWRIMK 361 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 FY HESCGQCTPCREGTGW+ ++ R+ G + +IDLL ++S I G +ICALG+AAA Sbjct: 362 FYAHESCGQCTPCREGTGWLEQICRRVAHGGGKPGDIDLLAQISHGIAGNSICALGEAAA 421 Query: 399 WPIQGLIKNFRPLIEER 415 WP+ G I FR E + Sbjct: 422 WPMMGFITKFRDEFEAK 438 >gi|296448075|ref|ZP_06889978.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b] gi|296254432|gb|EFH01556.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b] Length = 517 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 149/412 (36%), Positives = 224/412 (54%), Gaps = 5/412 (1%) Query: 3 TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 Q R+ F + + +L D ++ G + K E G +I EV SGLRGRGGAGF Sbjct: 99 AKQTRVTFERVGVIDPVNLDDYVAHGGGQGLAKAFEIGPAKVIEEVTKSGLRGRGGAGFP 158 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KW + +D Y+V NADE + GT DR +M +P LIEG I +AIGA Sbjct: 159 AGIKWKTVADAPAD-RRYVVTNADEGDSGTFADRMVMEGDPFVLIEGMTICGYAIGASKG 217 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FIY+R E+ + E L A++ +G LG N G+ DI + GAGAY+CGEET+LLE Sbjct: 218 FIYLRAEYPQCAEVLTEALEAARKAGWLGPNVRGSGFAFDIELRIGAGAYVCGEETSLLE 277 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G R KPP PA+VG PT VNNV ++A P IL +G +Y+ G +RGT Sbjct: 278 SLEGKRGIVRAKPPLPAHVGFMSRPTVVNNVLTLATAPAILAKGGEYYASLGVGRSRGTM 337 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 I+G+V + E +T E++ GG + AV GG +P + Sbjct: 338 PLQIAGNVKFGGLYETPFGLTLGEIVNDIGGG-SLSGRPVRAVQCGGPLGAYVPPS-LFD 395 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 DY+ ++ S +G ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 396 TPFDYEAFQKHDSLIGHGGLVVFDDTVDMAQMARFGMEFCAIESCGKCTPCRIGSTRGVE 455 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+V+G+ + I+LL ++ ++ ++CALG A +P++ ++++ Sbjct: 456 TIDRIVEGVDVEANIELLSDLCHTMKFGSLCALGGFAPYPVESALRHYPEDF 507 >gi|190893704|ref|YP_001980246.1| formate dehydrogenase, beta subunit [Rhizobium etli CIAT 652] gi|190698983|gb|ACE93068.1| formate dehydrogenase protein, beta subunit [Rhizobium etli CIAT 652] Length = 518 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 150/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SLSD + G + + + I+ EV SGLRGRGGAG Sbjct: 98 FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAQIVKEVTDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 158 FPTGIKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 FIY R E+ ++ AV +G+LG + G DI V GAGAY+CGEETAL Sbjct: 217 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ +++++ GG G + AV GG P + Sbjct: 337 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFP-RTL 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++ +GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETADKIARGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|70731260|ref|YP_261001.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf-5] gi|68345559|gb|AAY93165.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens Pf-5] Length = 451 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 164/406 (40%), Positives = 232/406 (57%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + ++ + K +D I+ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWFDEYQAKNGYAAARKAFADLSQDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ + +I++RGE+ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIIGDGVEWYKSLAREGSEDHGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++++ L KG Q Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEQFFARESCGFCTPCRDGLPWSVKLLMALEKGQGQ 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +I+ L + + G+T CA A P+ IK FRP E I Sbjct: 388 QGDIETLLGLVGFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433 >gi|299771415|ref|YP_003733441.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter sp. DR1] gi|298701503|gb|ADI92068.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Acinetobacter sp. DR1] Length = 443 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 163/400 (40%), Positives = 233/400 (58%), Gaps = 7/400 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L +++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYEALEGYAGFKKALGMKPAEVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGENILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE H GG+R G L A +PGG+S LPA + MD D + + GS LGT Sbjct: 272 FGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI-DLPMDADTIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L E+++ + G+T CA A P+ G +K+FR E ++ Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRGEFEAKV 429 >gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB [Herminiimonas arsenicoxydans] gi|133740483|emb|CAL63534.1| NAD-dependent formate dehydrogenase beta subunit [Herminiimonas arsenicoxydans] Length = 525 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 147/413 (35%), Positives = 221/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL D ++ + + K + I+ EV SGLRGRGGA F Sbjct: 107 LKKQERLQFVRVGITDPVSLDDYLAHEGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 166 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+ NADE + GT DR +M +P LIEG IA A+ A Sbjct: 167 PTGIKWKTVLGAEAD-QKYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVNATE 225 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ A+G LG N G ++ V AGAY+CGEETA+L Sbjct: 226 GYIYVRSEYPHSIANLNEAIVAANAAGYLGKNILGSGRTFNLQVRKAAGAYVCGEETAML 285 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S++ VP IL RGA++Y FG +RGT Sbjct: 286 ESIEGKRGLVRAKPPLPALQGLFGKPTVINNVISLSAVPLILSRGATFYKDFGMGRSRGT 345 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ Y VE++ +T EL+ GG G + AV GG +P + Sbjct: 346 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPES-LF 403 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + S +G ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 404 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGV 463 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM++++ + ++I LL ++ + ++CA+G+ +P+ + +F Sbjct: 464 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDF 516 >gi|262280142|ref|ZP_06057927.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus RUH2202] gi|262260493|gb|EEY79226.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus RUH2202] Length = 443 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 164/400 (41%), Positives = 233/400 (58%), Gaps = 7/400 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L +++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYEALEGYAGFKKALGMKPAEVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ D+ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGENILGSGWNFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE H GG+R G L A +PGG+S LPA + MD D + + GS LGT Sbjct: 272 FGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI-DLPMDADTIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWAVKALKALEVGEGKKEDIDH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L E+++ + G+T CA A P+ G +K+FR E ++ Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRGEFEAKV 429 >gi|118472465|ref|YP_884576.1| formate dehydrogenase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118173752|gb|ABK74648.1| formate dehydrogenase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 532 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 224/413 (54%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + QDR+ F + S D + G + + L+ ++ EV SGLRGRGGAGF Sbjct: 101 MATQDRVTFARVGVTDPVSPDDYLDHGGLAGLRRALQMSPAEVVAEVTDSGLRGRGGAGF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + C+D ++ NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 161 PAGIKWKTVL-DCADALKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGATE 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +++AA+D G LG + G D+ V G GAYICGEET++L Sbjct: 220 GYIYIRSEYPDAIATMRAAIDIARGRGWLGDDVLGSGLRFDMHVRVGGGAYICGEETSML 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV +++ VP +L GA Y+ FG +RGT Sbjct: 280 ESLEGKRGMVRAKPPIPAINGLFGKPTVVNNVLTLSSVPLVLAEGAQAYADFGVGRSRGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++F + G++ VE + IT EL+E + GG + AV GG LP+ + Sbjct: 340 QIFQLGGNIRRGGIVERAFGITLGELVEHYGGGT-LSGRPVRAVQVGGPLGAYLPSDR-F 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ E G+ +G ++V D + D+ F ESCG+CTPCR G+ M Sbjct: 398 DLPMDYEAFAEAGAMVGHGGIVVFDETVDMAAQARFAMEFCAAESCGKCTPCRVGSVRGM 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ G ++ + LL ++ + ++CA+G P++ + +F Sbjct: 458 EVIDRITAGDHREENLALLDDLCDVMTEGSLCAMGGLTPMPVRSALTHFPDDF 510 >gi|222150019|ref|YP_002550976.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4] gi|221737001|gb|ACM37964.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4] Length = 518 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 150/414 (36%), Positives = 219/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ + G+ SL D + K + I+ EV SGLRGRGGAG Sbjct: 98 FLKNQTRLTFSRCGITDPLSLEDYRHYKGLTGLAKAIAMPPADIVTEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + ++ Y+V NADE + GT DR IM +P LIEG VIA A+GA Sbjct: 158 FPTGIKWKTVADAKAE-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMVIAGIAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ ++ A++ G+LG++ Y D+ V GAGAY+CGEET+L Sbjct: 217 KGYVYTRSEYPHAIVVMREAIEIARKQGILGASVLGSAYAFDMEVREGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA GL+G PT VNNV S+A +P I+ RGA +Y +G + G Sbjct: 277 LNSLEGKRGVVRAKPPLPALEGLFGKPTVVNNVMSLASIPVIMDRGAQFYRDYGVGRSHG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T E+I GG + AV GG P + Sbjct: 337 TIPIQIAGNVKHGGLYETAFGLTLGEIINDIGGGT-LTGRPVKAVQVGGPLGAYFPPS-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + DY+ G +G A ++V D S D++K F ESCG+CTPCR G+ Sbjct: 395 FDTVFDYEAFTAAGGLIGHAGIVVFDDSADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++R+ KGI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETVDRIAKGIEPEKNKVLLEDLCNTMKFGSLCALGGFTPYPVMSAMTHFPQDF 508 >gi|302543439|ref|ZP_07295781.1| NADH oxidoreductase (quinone), F subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461057|gb|EFL24150.1| NADH oxidoreductase (quinone), F subunit [Streptomyces himastatinicus ATCC 53653] Length = 459 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 198/418 (47%), Positives = 255/418 (61%), Gaps = 13/418 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +L + + K L D +I VK +GLRGRGGAGF TGMKW F+P+ Sbjct: 28 NSWTLRAYLRHEGYQGSAKALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDG 86 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 +PHYLVVNADESEPGTCKD ++ PH LIEG VIA AI + AFIY+RGE + Sbjct: 87 KPHYLVVNADESEPGTCKDIPLLYANPHALIEGMVIACHAIRSEHAFIYLRGETVPVLRR 146 Query: 136 LQAAVDECYASGLLG----SNSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKG 187 L AV E Y +G LG KLG D +DI VH GAGAYICGEETALL+SLEG++G Sbjct: 147 LHEAVREAYEAGYLGTAERRREKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRG 206 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPRL+PPFPA GLY CPT VNNVESIA VP+IL +G W+ G E + G L+S+SGH Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPSILNKGKEWFRSMGSEKSPGFTLYSLSGH 266 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E + IT +L++ G L PGGSS P L + +DY+G Sbjct: 267 VANPGQFEGPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEG 323 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + GS LGT A+ D +T +++A+ R + FY HESCG+CTPCREGT W+++++ + Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDVEA 383 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G + ++D L +++ NI G++ CALGD AA PI +K FR E+ I C F Sbjct: 384 GKGRMADLDKLADIADNINGKSFCALGDGAASPIFSSLKYFRAEYEQHITGGG-CPFD 440 >gi|254284253|ref|ZP_04959221.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B] gi|219680456|gb|EED36805.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B] Length = 514 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 145/415 (34%), Positives = 215/415 (51%), Gaps = 5/415 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ G + G + + L I++EVK SGLRGRGGA Sbjct: 98 FLKNQQRLTFERAGEGDPLCIETYQQLGGFVGLRNALAMTAQQIVDEVKESGLRGRGGAA 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW + Y+V NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 158 FPAGIKWQTVLDAV-GNRKYIVCNADEGDSGTFADRLLMEADPFQLIEGMTIAALAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ + L A++ +G LG + G + V GAGAYICGEET+L Sbjct: 217 QGYIYLRSEYPLAHQILNEAIERAEQAGYLGDDLLGSGQAFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA GL+G PT VNNV ++A V T+L +G+ +Y FG +RG Sbjct: 277 LNSLEGKRGIVRAKPPLPAIEGLFGKPTVVNNVLTLAAVTTVLAKGSDFYQDFGVGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE + T +L+ + GG L A+ GG LP Sbjct: 337 TLAFQLAGNIERGGLVELAFGTTLRDLVSEF-GGDSASGRPLRAIQVGGPLGAYLPESS- 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ E+G +G V+V D S ++ F ESCG+CTPCR G Sbjct: 395 WDTPLDYEAFAEIGGMIGHGGVVVFDESINMSDQARFAMDFCAEESCGKCTPCRVGAVRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + V++R+ +G ++ +LL ++ +E ++CA+G +P++ + F + Sbjct: 455 VEVIDRIREGNEPEKNRELLLDLCDTMESASLCAMGGMTPFPVRSALHYFPEDFQ 509 >gi|229591257|ref|YP_002873376.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens SBW25] gi|312961690|ref|ZP_07776188.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens WH6] gi|229363123|emb|CAY50142.1| NADH dehydrogenase I chain F [Pseudomonas fluorescens SBW25] gi|311283949|gb|EFQ62532.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens WH6] Length = 451 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 162/406 (39%), Positives = 231/406 (56%), Gaps = 7/406 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K +D I+ VK +GL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQAKNGYAAARKAFADMAQDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH LIEG +I++ A+ + +I++RGE+ + Sbjct: 90 INIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV+E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 HLNRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIIADGVDWYKSLAREGSEDMGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +T EL E + GG+R G+ L A PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGY-TLKAWQPGGAGTGFLLPEHL-DAQMYAGGIGKV 327 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G+ +GT + +D + +++ + + F+ ESCG CTPCR+G W ++++ L G + Sbjct: 328 GTRMGTGLAMAVDNTVNMVSLLRNMEQFFARESCGFCTPCRDGLPWSVKLLMALENGEGR 387 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + +I+ L + + G+T CA A P+ IK FR E I Sbjct: 388 EGDIETLLGLVGFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433 >gi|21672441|ref|NP_660508.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008857|sp|Q8K9Y3|NUOF_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|21623053|gb|AAM67719.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 447 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 160/410 (39%), Positives = 242/410 (59%), Gaps = 8/410 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + + ++ K L+ + +++ +K SGL+GRGGAGFSTG+KWS M K S + Sbjct: 26 IEEYCKKNGYFSLKKALKTMCPEDVVHLIKESGLKGRGGAGFSTGLKWSLMSKDNSSKIR 85 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M + PH LIEG ++++FA+ +I++RGE+I+ L+ Sbjct: 86 YLLCNADEMEPGTYKDRFLMENIPHQLIEGMLLSAFALNVSRGYIFLRGEYIKAEYILKK 145 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 ++ E G +GSN G++ ++ +H GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 146 SIQEAINFGFIGSNILNSGFNFELFLHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 205 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE+++ VP+I+ G +WY + + GTKL SG VN P E Sbjct: 206 VFGLWGKPTCVNNVETLSNVPSIVLHGVNWYKKLSKSTDTTGTKLMGFSGKVNNPGVWEL 265 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T E++E + G++ G L + PGG+ L + MD+ + + GS LG Sbjct: 266 PFGTTAREILEDYARGMKSGL-FLKSWQPGGAGTDFLIEKHL-DLPMDFTSIAKAGSRLG 323 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 TA + +D T++I + + F+ ESCG CTPCREG W+++++E L K K ++ Sbjct: 324 TAIAMAVDNKTNMISLVCNIEKFFSRESCGLCTPCREGLPWIVKILESLEKKEGHKNDVK 383 Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER--IDQYHRCN 423 L + ++ G+T CA A P+Q IK FR E I + +C+ Sbjct: 384 NLERLCLDLSPGKTFCAHAPGAVEPLQSAIKYFRLEFEAGISIKKLKKCS 433 >gi|56751243|ref|YP_171944.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301] gi|56686202|dbj|BAD79424.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301] Length = 534 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 139/419 (33%), Positives = 236/419 (56%), Gaps = 9/419 (2%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58 + Q +I G + L ++ G + + I + + ++ SGLRGRGG Sbjct: 112 FFSQQLKIVNRHSGLINPDRLESYLAAGGYRALMHTIFDLTPTEVAEIIRLSGLRGRGGG 171 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + K+ SD ++V N DE +PG DR ++ +PH +IEG IA++A+GA Sbjct: 172 GYPTGLKWATVAKMPSD-RKFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGA 230 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ L A+ + GLLG++ + D+ V GAGA++CGEETA Sbjct: 231 NFGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRIGAGAFVCGEETA 290 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S++G++G PR++PP+PA GL+G PT +NNVE+ A + I+ + A W++ G ++ Sbjct: 291 LIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQSADWFAAIGTPTSK 350 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G + +E M I +++ G+ + AV GG S C+P Q Sbjct: 351 GTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLAQ 406 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L ++GS +G+ ++VMD +TD++ F + ESCG+C PCR GT Sbjct: 407 L-DTPVDYDSLIQLGSMMGSGGMVVMDENTDMVAIARFYMEFCRSESCGKCIPCRAGTVQ 465 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 + ++ +L G ++ L ++ ++ ++C LG +A PI ++ FR E R+ Sbjct: 466 LHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESRL 524 >gi|311697064|gb|ADP99937.1| NADH dehydrogenase (quinone) [marine bacterium HP15] Length = 512 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 153/415 (36%), Positives = 228/415 (54%), Gaps = 4/415 (0%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F+ + S++D S G + +++ + I++EVKASGLRGRGGA F Sbjct: 100 LKLQQRLTFSRIGITDPLSIADYRSHGGFVGLEQAVSLSPQAIVDEVKASGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR M +P+ LIEG IA A+GA Sbjct: 160 PTGIKWQTVHDEPWQQQKYIVCNADEGDSGTFADRLAMECDPYMLIEGMTIAGLAVGATQ 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ L A+ A G LG + G ++ V AGAYICGEET+LL Sbjct: 220 GFIYLRSEYPVAHRILNEAISRAEAEGYLGRDVRGSGRAFNLEVRLAAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S A VP IL +G Y+ +G +RGT Sbjct: 280 ESLEGKRGLVRAKPPLPAIKGLFGQPTVVNNVLSFAAVPFILAKGGQTYAHYGMGKSRGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E + ++ E++E GG + AV GG + +P Q Sbjct: 340 LPIQLAGNIRRGGLIELAFGVSLREILEDFGGGT-FTGRPMKAVQVGGPLMAYMPQNQ-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ ++G+G+G V+V D + D+ + F ESCG+CTPCR G+ + Sbjct: 398 DTPMDYEAFAQLGAGIGHGGVVVFDDTVDMGEQARFAMEFCTVESCGKCTPCRIGSVRGL 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 V++R+ G + + + LL E+ + + ++CA+G +P+Q ++K F + Sbjct: 458 EVIDRIRAGESPEANLVLLEELCETMVDGSLCAMGGMTPFPVQSVMKYFPDDLTA 512 >gi|254282080|ref|ZP_04957048.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B] gi|219678283|gb|EED34632.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B] Length = 417 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 163/411 (39%), Positives = 236/411 (57%), Gaps = 8/411 (1%) Query: 20 LSDSMSRGHWDNVD-KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP-KVCSDRP 77 ++ + G ++++ I ++ + +K S LRGRGGAGF TGMKWSF+P + Sbjct: 1 MAAYEANGGYNSLKTNIGQRTPAECLEIIKDSNLRGRGGAGFPTGMKWSFVPMDNATPGH 60 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M +PH LIEG +++++ + A A+I++R E+ + L+ Sbjct: 61 KYLICNADEMEPGTFKDRLLMECDPHQLIEGMILSAYTLQADIAYIFIRAEYHKAIGLLR 120 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ C+ G LG N G+ +++ VH AG YICGEETAL+ SLEGK+ PR KPPFP Sbjct: 121 EAITACHEKGYLGDNILGSGFSLEMHVHVSAGRYICGEETALISSLEGKRANPRAKPPFP 180 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE++ + IL GA W+ G+ + GTKL+ +SG V P E Sbjct: 181 QVSGLWGRPTIVNNVETLCNIHHILEFGADWFQALGKGEDAGTKLYGVSGRVKNPGCWEL 240 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + + E+IE H GG+ G+ +L +PGG S L + MDY + + GS +G Sbjct: 241 PIGTSIREIIEDHAGGMEDGY-SLRGFLPGGGSTDFLTPEHL-DLAMDYGTIGKAGSRMG 298 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T +IV+D T I I L+ F+ ESCG CTPCR+G W +V+E L G + +++ Sbjct: 299 TGTMIVLDDKTCPIGFIHNLTSFFARESCGFCTPCRDGLPWSAQVLESLENGDGRPEDLE 358 Query: 377 LLYEVSKNIE--GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 L I G T CAL A P+Q +K FR E I++ C ++ Sbjct: 359 TLAYQIDYIGAIGNTHCALAPGAMEPVQSALKYFREDFEAHINEGC-CPYE 408 >gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] gi|151281250|gb|ABR89660.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 518 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 145/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL D ++ + + K + I+ EV SGLRGRGGA F Sbjct: 99 LKKQERLQFVRVGITDPVSLEDYLAHDGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+ NADE + GT DR +M +P LIEG IA A+ A Sbjct: 159 PTGIKWKTVLGAEA-AQKYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATE 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ A+G LG N G ++ V AGAY+CGEETA+L Sbjct: 218 GYIYVRSEYPHSIANLNEAIVAANAAGYLGENILGSGRTFNLQVRKAAGAYVCGEETAML 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV S++ VP IL RGA +Y +G +RGT Sbjct: 278 ESIEGKRGMVRAKPPLPALQGLFGQPTVINNVISLSAVPLILSRGAEFYKNYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ Y VE++ +T EL+ GG G + AV GG +P + Sbjct: 338 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPES-LF 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + S +G ++ D + D+ K F ESCG+CTPCR G+ + Sbjct: 396 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAEESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM++++ + ++I LL ++ + ++CA+G+ +P+ + +F Sbjct: 456 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDF 508 >gi|262373371|ref|ZP_06066650.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii SH205] gi|262313396|gb|EEY94481.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii SH205] Length = 441 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 158/403 (39%), Positives = 228/403 (56%), Gaps = 7/403 (1%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + + + K L +++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DEYEALEGYAGFKKALSMPPKDVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGENILGSGWNFEMYVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE H GG+R G L A +PGG+S L A + MD + + + GS LGT Sbjct: 272 FGTTAREVIEDHAGGMRDGL-TLKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ A L F+ ESCG CTPCR+G W ++ ++ L G + +I Sbjct: 330 CLLMVVDETQCMVSATRNLEEFFARESCGWCTPCRDGLPWAVKALKALESGEGKMEDIQH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 L E++K + G+T CA A P+ G +K FR E ++ + Sbjct: 390 LSELTKKLWIGKTFCAHAPGAMEPLMGALKYFRHEFEAKVKTH 432 >gi|257453971|ref|ZP_05619247.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60] gi|257448636|gb|EEV23603.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60] Length = 490 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 169/403 (41%), Positives = 234/403 (58%), Gaps = 7/403 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L+ S ++ + L K + N +K + +RGRGGAGF+ G+KW+FM P Sbjct: 52 DLATYESLKGFEGLKNALAKSAKEVGNMIKDANVRGRGGAGFNAGLKWTFMT-PPDGGPR 110 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M P LIEG +I+ +AIGA +I++RGE+I + L Sbjct: 111 YLICNADEMEPGTFKDRLLMERLPFQLIEGMIISGYAIGATAGYIFIRGEYIEAAKRLNN 170 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DEC A G LG N GY D+ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 171 ALDECRAKGYLGDNILGSGYSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQ 230 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVES+ +P I+ G WY G G+ N GTK+ SG VN P E Sbjct: 231 VSGAWGRPTVVNNVESLNNMPGIMLHGVEWYKGLAQGKSENPGTKIMGCSGLVNEPGLWE 290 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDYDGLKEMGSG 314 T E+I + G++ G L A +PGG+S L A + MD++ + + GS Sbjct: 291 LPFGTTAREIIFDYAKGMKDGRK-LKAWLPGGASTDFLTASDEHLDLPMDFEPIMKAGSR 349 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT ++V+D S D++ L F+ ESCG CTPCR+G W ++ + + G Q + Sbjct: 350 LGTCLIMVVDESQDMVSLSLNLQKFFARESCGWCTPCRDGLPWGVKTLHAIDTGNGQPVD 409 Query: 375 IDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ID+L +++K++ G+T CA A P+Q +K F P E +I Sbjct: 410 IDVLRQLTKDLWLGKTFCAHAPGAVEPLQSALKYFLPEFEAKI 452 >gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S] gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S] Length = 688 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 206/428 (48%), Positives = 264/428 (61%), Gaps = 18/428 (4%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 D+DR +L + + K L D +I VK +GLRGRGGAGF T Sbjct: 255 WDEDR---------SWTLDAYHGHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPT 305 Query: 63 GMKWSFMPKVCSDR----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GMKWSF+P+ + PHYLVVNADESEPGTCKD +M PHTLIEG VIA++AI A Sbjct: 306 GMKWSFIPQDPATDGTAKPHYLVVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRA 365 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 AF+YVRGE + LQAAV E Y +G LG + GYD+DI+VH GAGAYICGEETA Sbjct: 366 AQAFVYVRGEVVPVLRRLQAAVAEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETA 425 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEG++GQPRL+PPFPA GLY PT VNNVESIA VP I+ RG W+ G G E + Sbjct: 426 LLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASP 485 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G L+S+SGHV P E + +T +L++ G L PGGSS P L Sbjct: 486 GFTLYSLSGHVTRPGQYEAPLGVTLRQLLDVAGG--VRAGHRLKFWTPGGSSTPLLTDEH 543 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+G+ GS LGT A+ + D +T I++ + R + FY HESCG+CTPCREGT W Sbjct: 544 L-DVPLDYEGVAGAGSMLGTKALQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYW 602 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++++ERL +G +++ L +VS I G++ CALGD AA PI +K FR + Sbjct: 603 LVQILERLERGEGSAEDLEKLLDVSDTILGKSFCALGDGAASPIMSSLKYFRDEYVAHVG 662 Query: 418 QYHRCNFQ 425 C F Sbjct: 663 GRG-CPFD 669 >gi|332285353|ref|YP_004417264.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp. T7-7] gi|330429306|gb|AEC20640.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp. T7-7] Length = 523 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 227/413 (54%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ S+SD + + ++K L I+++V SGLRGRGGA F Sbjct: 101 LKRQERLTFARVGITDPLSISDYQAHEGFKGLEKALSLPPAAIVDQVTESGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + ++ Y+V NADE + GT DR +M +P+ LIEG IA A+ A Sbjct: 161 PTGIKWKTVLATEAE-QKYIVCNADEGDSGTFSDRMLMEGDPYALIEGMAIAGLAVQATY 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG+N + G+ D+ V AGAYICGEET+LL Sbjct: 220 GYIYVRSEYPYAITALEAAIVRAREAGWLGANIRNSGHAFDLEVRTAAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA++Y +G + GT Sbjct: 280 ESLEGKRGLVRAKPPLPAIKGLFGKPTVINNVISLASVPIILARGAAFYRDYGMGRSTGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ +T EL+ + GG G L AV GG LP Q Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLTLRELLYEFGGGSASG-KPLRAVQVGGPLGAYLPESQ-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G ++ D + D+ F ESCG+CTPCR G Sbjct: 398 DVPIDYEAYAAIKAMVGHGGLVAFDDTADMSSLAEYAMEFCAIESCGKCTPCRIGAVRGA 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ ++ + ++ ++ LL+E+ + ++CALG +P+ +++F Sbjct: 458 EVISKIRRNEQREAQVVLLHELCDTMLAGSLCALGGMTPYPVLSALEHFPEDF 510 >gi|300775177|ref|ZP_07085039.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910] gi|300505917|gb|EFK37053.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910] Length = 452 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 199/411 (48%), Positives = 266/411 (64%), Gaps = 15/411 (3%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 +G + +K L+ D I+ EVKASGLRGRGGAGF TGMKWSF+ K P +L Sbjct: 19 ETYRKQGGYTAAEKALKMTPDEILEEVKASGLRGRGGAGFPTGMKWSFLAK-PEGVPRHL 77 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 VVNADESEPGT KDR +M PH LIEG +I+S+ +G++ ++IY+RGE+ + L+ A+ Sbjct: 78 VVNADESEPGTFKDRYLMEFLPHLLIEGMLISSYCLGSNTSYIYIRGEYSWIPDILEEAI 137 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 +E A+G LG N G+D++I V G GAYICGEETALLESLEGK+G PRLKPPFPA Sbjct: 138 EEAKAAGFLGKNILGTGFDLEIYVQRGGGAYICGEETALLESLEGKRGNPRLKPPFPAVK 197 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+ PT VNNVESIA V I+ + Y+ G + GTKL S G++N P E M+ Sbjct: 198 GLWERPTVVNNVESIAAVVPIIDITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMT 257 Query: 260 ITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLK-- 309 IT +E I ++CGGI+ L A IPGGSSVP +PA + + M+Y+ L Sbjct: 258 ITVEEFIYSDEYCGGIK-DGKRLKACIPGGSSVPIVPANLLLRTVNGEPRYMNYESLADG 316 Query: 310 --EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 G+ +G+ IV+D I++ L+ FY HESCGQCTPCREGTGWM ++++++ K Sbjct: 317 GFATGTMMGSGGFIVLDEDQCIVEHTMTLARFYNHESCGQCTPCREGTGWMYKILKKIEK 376 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + +IDLL+++ + IEG TIC LGDAAAWP+ I++FR E + Sbjct: 377 GEGKMEDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHVKN 427 >gi|332669454|ref|YP_004452462.1| NADH-quinone oxidoreductase subunit F [Cellulomonas fimi ATCC 484] gi|332338492|gb|AEE45075.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas fimi ATCC 484] Length = 446 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 195/402 (48%), Positives = 250/402 (62%), Gaps = 5/402 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + +L+ G + + + L ++ VK SGLRGRGGAGF TGMKW F+P Sbjct: 15 ADRSWTLTSYERAGGYRGLRRALAMQAADVVTMVKESGLRGRGGAGFPTGMKWGFLP-AP 73 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 P YLVVNADESEPGTCKD +M P L+EG +I S+AIG H AF+YVRGE + Sbjct: 74 DGGPRYLVVNADESEPGTCKDIPLMMASPQHLVEGMIITSYAIGCHHAFLYVRGEVLHVY 133 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L A++E A+G LG N G+D++I +H GAGAYICGEETALL+SLEG +GQPRLK Sbjct: 134 RRLLHAIEEARAAGYLGRNILGSGFDLEITLHAGAGAYICGEETALLDSLEGLRGQPRLK 193 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFPA GLY PT VNNVESIA VP I+R GA W+ G G E + G LFS+SGHV P Sbjct: 194 PPFPAVAGLYARPTVVNNVESIASVPGIVRGGADWFKGMGTERSTGHGLFSLSGHVTRPG 253 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + IT EL++ G + PGGSS P A + +DY+ + G Sbjct: 254 QYEAPLGITLRELLDMAGG--IREGHQVKFWTPGGSSTPIFTAEHL-DVPLDYESVGAAG 310 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT A+ + D +T +++A+ R FYKHESCG+CTPCREGT W+++V++R+ G Sbjct: 311 SMLGTRALQIFDETTSVVRAVTRWLEFYKHESCGKCTPCREGTYWLVQVLKRIEAGRGTH 370 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +IDLL ++ NI GR CALGD A PI ++ FR E Sbjct: 371 EDIDLLLDLCDNILGRAFCALGDGATSPITSAVQYFREEFEA 412 >gi|144897650|emb|CAM74514.1| NADH dehydrogenase (quinone) [Magnetospirillum gryphiswaldense MSR-1] Length = 511 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 226/413 (54%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q R+ F S++D + G + +++ L I+ EV SGLRGRGGAGF Sbjct: 101 FKHQQRLTFARCGLTDPLSVADYRAHGGFAGLERALTLSPSEIVEEVTQSGLRGRGGAGF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+ + S ++ NADE + GT DR I+ +P LIEG IA+ A+GA Sbjct: 161 PTGIKWNTVL-NASAAEKFVCCNADEGDSGTFADRMIIEGDPFLLIEGMTIAALAVGARQ 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ +L+ A+ Y LG+N G+D + V GAG+Y+CGEETA+L Sbjct: 220 GYVYLRSEYPHAVATLREAIRRAYEQDWLGTNIHGSGHDFHLEVRVGAGSYVCGEETAML 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV ++ VP +L +GA++Y FG + GT Sbjct: 280 ESLEGKRGMVRAKPPIPALQGLFGQPTIVNNVLTLTSVPVVLAKGAAFYRDFGAGRSHGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + F ++G++ VE + ++ +LI ++ GG G L AV GG +P M Sbjct: 340 QPFQLAGNIQRGGLVELAFGVSLHDLIYRYGGGTASGRP-LRAVQVGGPLGAYVPES-ML 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 G DY+ + E G+ LG ++V D + + + F ESCG+CTPCR G+ Sbjct: 398 GLSADYESMAEAGAMLGHGGIVVFDETVRMARMARFAMDFCAVESCGKCTPCRIGSTRGR 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++++V G + LL ++ + ++CA+G A P+Q I++F Sbjct: 458 EVLDKIVAGENVADNMALLDDLCTVMADGSLCAMGGLAPLPVQSAIRHFPEDF 510 >gi|33600308|ref|NP_887868.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella bronchiseptica RB50] gi|33567907|emb|CAE31820.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella bronchiseptica RB50] Length = 526 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 154/414 (37%), Positives = 230/414 (55%), Gaps = 6/414 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G +++ L + I++EV ASGLRGRGGA F Sbjct: 105 LKHQERLTFARVGVIDPLSLQDYAAHGGLAGLNRALAMSAEQIVDEVSASGLRGRGGAAF 164 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR +M +P++LIEG IA A+GA Sbjct: 165 PTGIKWKTVLTTPAP-RKYIVCNADEGDSGTFADRLLMEGDPYSLIEGMTIAGLAVGATY 223 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A+ G LG + G D+ V GAGAYICGEET+LL Sbjct: 224 GYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHGSGQRFDLEVREGAGAYICGEETSLL 283 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VPTI+ RGA+ Y FG + GT Sbjct: 284 ESLEGKRGVVRAKPPLPAIAGLFGLPTVINNVISLATVPTIMARGAAHYRDFGVGRSHGT 343 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE++ +T +L+ GG G L AV GG LP Q Sbjct: 344 LPFQLAGNLKHGGLVEKAFGLTLRDLLYGFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 401 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D + D+ + F ESCG+CTPCR G+ + Sbjct: 402 DVPLDYEAYVQISAMVGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461 Query: 360 RVMERLVKGIAQKRE-IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++V G Q+ + + LL ++ + ++CALG A +P+ + +F Sbjct: 462 ETIDKIVAGGPQREQRVHLLRDLCDTMLAGSLCALGGMAPYPVLSALNHFPEDF 515 >gi|325067542|ref|ZP_08126215.1| NADH-quinone oxidoreductase, F subunit [Actinomyces oris K20] Length = 443 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 198/415 (47%), Positives = 250/415 (60%), Gaps = 15/415 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +L + G ++ + K + +I+ +K SGLRGRGGAGF Sbjct: 20 LWDQER---------SWTLQAYLDHGGYEGLKKAKTLSCEDLISLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179 F+Y+RGE L +AV E SGLL + L + I H GAGAYICGEETALL Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLLDTGFGLDGQQRLRITAHAGAGAYICGEETALL 189 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++G Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSKGH 249 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +FS+SGHV +P E IT ELIE G L +PGGSS P ++ Sbjct: 250 GIFSVSGHVAHPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT WM Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421 >gi|171914655|ref|ZP_02930125.1| NADH-quinone oxidoreductase, F subunit [Verrucomicrobium spinosum DSM 4136] Length = 463 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 201/426 (47%), Positives = 260/426 (61%), Gaps = 19/426 (4%) Query: 3 TDQDRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + IF N+ G S+ ++ G ++ + K + R II+EVK SGLRGRGGAGF Sbjct: 16 REHRLIFRNIDREGYTP-SIESFVANGGYEMLKKAVGMERQAIIDEVKKSGLRGRGGAGF 74 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW F+P + +P YL+ NADESEPGT KDR I+ +PH LIEG VIA FA+ A Sbjct: 75 PTGVKWGFIP-PTNTKPVYLICNADESEPGTFKDRYILHQDPHQLIEGMVIACFAVKATL 133 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IYVR EF L+ A+ E A+ LG N GYD+DI VH GAGAYICGEET L+ Sbjct: 134 AYIYVREEFPEAAIILEKALAEARANNFLGKNILGTGYDLDIFVHRGAGAYICGEETGLI 193 Query: 180 ESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 ESLEGK+ PR+KPP FPA +GLY CPT VNNVES+ V IL G Y+ G NN G Sbjct: 194 ESLEGKRPYPRIKPPYFPAALGLYMCPTIVNNVESLCHVKHILEMGGEEYAKLGTPNNTG 253 Query: 239 TKLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 T++ +SG V P E + +T E+I CGG++ G L A+IPGGSS L A + Sbjct: 254 TRILCVSGDVQKPGYFEVQVGKVTMGEVINDLCGGLKPGRK-LKAIIPGGSSAKVLRADE 312 Query: 298 -----------MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 + MD+D + GS G+ VI+MD S + I L+ FY HESCG Sbjct: 313 VFKLRDGRELGIMDIPMDFDTMAACGSMAGSGGVIIMDDSRSMTWVINNLNNFYAHESCG 372 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 QCTPCREG+ WM ++ +R+V G A ++ L V+ NIEG+TICA G+A +WP Q +K Sbjct: 373 QCTPCREGSLWMKKISDRIVAGEASPSDVAELERVANNIEGKTICAFGEACSWPTQSFVK 432 Query: 407 NFRPLI 412 FR + Sbjct: 433 KFREEM 438 >gi|119475815|ref|ZP_01616167.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2143] gi|119450442|gb|EAW31676.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2143] Length = 522 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 155/413 (37%), Positives = 229/413 (55%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L DQ R+ F + + S+ + G + + L K I+ ++ SGLRGRGGA F Sbjct: 103 LRDQQRLTFARVGIIDPLSIEHFLQHGGFQGLKHALTKKPAEIVVDITDSGLRGRGGAAF 162 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + SD Y+V NADE + GT DR IM +P +LIEG +IA A+GA Sbjct: 163 PTGIKWQTVLLTESD-QKYIVCNADEGDSGTFADRMIMESDPFSLIEGMIIAGLAVGATR 221 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++ L+ A+ LG G++ + V GAGAYICGEETALL Sbjct: 222 GYIYLREEYRLAQQVLEQAIHVAEEHHYLGEQVHGSGHEFRLEVRMGAGAYICGEETALL 281 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGK+G R KPP PA GL+G PT VNNV S+A VP IL RG+ +Y +G +RGT Sbjct: 282 DSLEGKRGMVRTKPPVPAVAGLFGKPTVVNNVLSLATVPVILARGSQFYKDYGLGRSRGT 341 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V + VE + I+ +L+ GG R G + A+ GG LP Q Sbjct: 342 IPLQLAGNVRHAGLVEVAFGISLRKLVTYFGGGTRTG-KPIKAIQVGGPLGAYLPTAQ-W 399 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++G+ LG V+V D + D+ + F ESCG+CTPCR G+ + Sbjct: 400 DTPLDYEAFTDIGAILGHGGVVVFDDTVDMAEQAQFAMEFCAIESCGKCTPCRIGSTRGV 459 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+E++ +G +++ LL ++ + +E ++CA+G +P+ NFR Sbjct: 460 EVLEKIRQGTQREKNSQLLIDLCETMELGSLCAMGGMTPFPVLSAFNNFREDF 512 >gi|71278646|ref|YP_270681.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H] gi|71144386|gb|AAZ24859.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H] Length = 537 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 148/417 (35%), Positives = 230/417 (55%), Gaps = 9/417 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q R+ F + + + D +S G + + K +++EVK SGLRGRGGA F Sbjct: 114 FKSQQRLTFARVGIIDPIDVDDYISHGGFVGLTNAFAKTAQQLVDEVKESGLRGRGGAAF 173 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + ++ Y+V NADE + GT DR +M +P L+EG +IA ++GA Sbjct: 174 PTGIKWQTVL-NEPEQQKYIVCNADEGDSGTFADRMLMEGDPLVLVEGMIIAGLSVGADQ 232 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ + + L A+ A+G LG N ++ + V GAGAYICGEET+LL Sbjct: 233 GYIYLRSEYPQAHDLLNKAISNAKAAGYLGDNICGTEHNFHLEVRLGAGAYICGEETSLL 292 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VP IL G Y FG +RGT Sbjct: 293 ESLEGKRGLVRAKPPLPAIEGLFGQPTVVNNVISLASVPYILSHGGDSYRDFGMGRSRGT 352 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ VE + I+ +EL++++ G + + +V GG LPA Q Sbjct: 353 LPIQLAGNIAQGGLVELAFGISLNELLQQYGNGCK-SKRAMRSVQVGGPLGAYLPAEQ-W 410 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG ++V D + D+ F + ESCG+CTPCR G + Sbjct: 411 DTALDYEEFASIGAVLGHGGIVVFDDTVDMAAQARFAMEFCEVESCGKCTPCRIGAVRGV 470 Query: 360 RVMERLVKGIAQKRE----IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+++++ G +++ +DLL+++ +E ++CA+G +P++ +K F Sbjct: 471 EVIDKIIDGNNDEQQRQDSVDLLHDLCDTMEFGSLCAMGGMTPFPVRSALKYFPDDF 527 >gi|86359439|ref|YP_471331.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42] gi|86283541|gb|ABC92604.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42] Length = 518 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 151/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ G+ SL D + G + + + I+ EV SGLRGRGGAG Sbjct: 98 FLKEQTRLTFARCGITDPLSLGDYEAHGGLAGLRRAVSMTPVEIVKEVTDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVL-DASGERKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ + A+ +G+LG + G DI V GAGAY+CGEETAL Sbjct: 217 KGFVYTRSEYPHAIAVMSEAIGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ RGA++Y FG +RG Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMERGAAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ +++++ GG R G + AV GG P + Sbjct: 337 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTRTGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++++ +GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETVDKIARGIEPEKNRVLLGDLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|316932167|ref|YP_004107149.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] gi|315599881|gb|ADU42416.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] Length = 518 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 218/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ +S+ D + G + +++ L+ D II++V SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGIVDPRSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW + + Y+ NADE + GT DR +M +P +IEG IA A+GA Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179 +IY+R E+ E++ A++ +G LG + D DI V GAGAYICGEET++L Sbjct: 217 GYIYIRSEYPHAVEAMNVAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT +NNV + + VP IL GA Y+ G +RGT Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K + G++ + E + IT ELI+ GG G + AV GG P + Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELIDDIGGGTASGRP-VRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F HESCG+CTPCR G+ Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGA 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G I +L ++ ++ ++CALG A P+ + +F Sbjct: 455 ETVDKIIAGDKPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507 >gi|332249694|ref|XP_003273992.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Nomascus leucogenys] gi|332249696|ref|XP_003273993.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 2 [Nomascus leucogenys] gi|332249698|ref|XP_003273994.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 3 [Nomascus leucogenys] Length = 363 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 232/349 (66%), Positives = 279/349 (79%), Gaps = 1/349 (0%) Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 M K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGE Sbjct: 1 MNKPSYGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGE 60 Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 F E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G Sbjct: 61 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 VN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+ Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 349 >gi|319779887|ref|YP_004139363.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165775|gb|ADV09313.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 518 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 150/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F SL G + + L I+ EV SGLRGRGGAG Sbjct: 98 FLAKQTRLTFARCGVTDPLSLESYKKHGGLNGLMNALALTPAAIVAEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + D Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLDTAGD-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+YVR E+ ++ AV+ +G+LG++ + D+ + GAGAY+CGEETAL Sbjct: 217 KGFVYVRSEYPHAVAAMNKAVEIARKAGVLGASVLGSPHAFDMEIRVGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L+SLEGK+G R KPP PA+ GL+G PT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LDSLEGKRGMVRAKPPLPAHKGLFGKPTVINNVISLASVPVIMDKGAAFYKDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T E++++ GG G + AV GG P + Sbjct: 337 TIPVQIAGNVKFAGLFEAAFGMTLGEIVDEIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++L GI ++ + L+ ++ ++ ++CALG +P+ I +F Sbjct: 455 VETIDKLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPYPVMSSITHFPDDF 508 >gi|118579913|ref|YP_901163.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118502623|gb|ABK99105.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] Length = 570 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 147/431 (34%), Positives = 233/431 (54%), Gaps = 11/431 (2%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58 T Q R + + +SL++ ++ G + K LE + I EV ASGLRGRGG Sbjct: 128 FYTRQTRFVLKECGWIDPESLNEYIATGGYGGAIKAFLEMTPEEICREVIASGLRGRGGG 187 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW ++ Y++ N DE +PG +R +M PH +IEG +IA+ AIG+ Sbjct: 188 GFPTGRKWEIARMQPAE-KKYVICNGDEGDPGAFMNRSVMEGNPHAVIEGLMIAARAIGS 246 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 ++YVR E+ + + AV++ A+G+LG+N G + + AGA++CGEETA Sbjct: 247 DEVYVYVRAEYPLAVKRMNMAVEDAEAAGILGNNIFGTGKRMKCTILPSAGAFVCGEETA 306 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 +L S+EG +G P KPPFPA GL G PT +NNVE++A +P IL GA + G + Sbjct: 307 MLASIEGLRGTPVPKPPFPAQCGLRGKPTIINNVETLAQIPRILLAGAQSFKKMGTPASP 366 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN-----LLAVIPGGSSVPC 292 GTK F+++GHV +E T E++ GG+ AV GG S C Sbjct: 367 GTKTFALTGHVVNTGLIEVPFGTTLREIVFSIGGGVTTDEGTPTDGMFKAVQVGGPSGGC 426 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 LP + +D+D L G+ +G+ ++VM++ T ++ F + ESCG+C CR Sbjct: 427 LPPE-LLDMPLDFDSLLSAGAMVGSGGLVVMNQQTCMVSVARFFMEFTQRESCGKCVLCR 485 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGT ++ +++ +++G A + +D++ ++K+I+ ++C LG A + +K FR Sbjct: 486 EGTRQLLVLLDDVIEGRATLQTLDIMELLAKSIKLGSLCGLGKTAPNAVLSTLKYFRAEF 545 Query: 413 EERIDQYHRCN 423 E + +C Sbjct: 546 ESHVVD-KQCP 555 >gi|39933810|ref|NP_946086.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009] gi|39647657|emb|CAE26177.1| NAD-dependent formate dehydrogenase beta subunit [Rhodopseudomonas palustris CGA009] Length = 518 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ +S+ D + G + +++ L+ D II++V SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGIVDPRSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW + + Y+ NADE + GT DR +M +P +IEG IA A+GA Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179 +IY+R E+ E++ AA++ +G LG + D DI V GAGAYICGEET++L Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT +NNV + + VP IL GA Y+ G +RGT Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K + G++ + E + IT EL+++ GG + AV GG P + Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDEIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F HESCG+CTPCR G+ Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGA 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G I +L ++ ++ ++CALG A P+ + +F Sbjct: 455 ETVDKIIAGDRPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507 >gi|14043258|gb|AAH07619.1|AAH07619 Unknown (protein for IMAGE:3355366) [Homo sapiens] Length = 354 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 228/343 (66%), Positives = 277/343 (80%), Gaps = 1/343 (0%) Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGEF E +LQ Sbjct: 1 KYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQ 60 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G+PRLKPPFP Sbjct: 61 VAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFP 120 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE Sbjct: 121 ADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEE 180 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +MD+D L + +GLG Sbjct: 181 EMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLG 240 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 TAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM R V+G A+ EID Sbjct: 241 TAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEID 300 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 301 SLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 343 >gi|332529346|ref|ZP_08405307.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624] gi|332041144|gb|EGI77509.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624] Length = 526 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 11/419 (2%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ SL D + + + K LE ++ +V SGLRGRGGA F Sbjct: 101 LKNQERLTFARMGITDPVSLEDYQAHQGYAGLRKALEIKPTDVVQQVLDSGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + +D Y+V NADE + GT DR M +P+ LIEG IA+ A GA Sbjct: 161 PAGIKWKTVAAAQAD-QKYVVCNADEGDSGTFSDRMTMEGDPYMLIEGMTIAAMATGATR 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ ++L A+ +G LG N G + V GAG+Y+CGEETA+L Sbjct: 220 GYIYVRSEYPHAIDNLNEAIARATKAGFLGDNVLGSGRAFHLEVRKGAGSYVCGEETAML 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV + A VP IL RGA++Y+ +G ++GT Sbjct: 280 ESIEGKRGIVRAKPPIPALQGLFGKPTVINNVITYASVPIILARGAAFYANYGMGRSKGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T +L+ ++ GG G + A+ GG +P Q Sbjct: 340 LPIQLAGNIKHGGLVEKAFGVTLRQLVFEYGGGTASGRP-VKAIQVGGPLGAYVP-EQHW 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+G +G+ +G ++V D ++D+ K F ESCG+CTPCR G+ + Sbjct: 398 DLPMDYEGWTAVGATVGHGGIVVHDDTSDMRKLARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVKGIAQ------KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL + Q +++ LL ++ + ++CA+G +P+ + ++ Sbjct: 458 EVIDRLAEADRQGKPEVKAQQVKLLRDLCDTMVNGSLCAMGGMTPFPVLSALNHYPQDF 516 >gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] Length = 688 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 207/428 (48%), Positives = 263/428 (61%), Gaps = 18/428 (4%) Query: 3 TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 D+DR +L + + K L D +I VK +GLRGRGGAGF T Sbjct: 255 WDEDR---------SWTLDAYHGHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPT 305 Query: 63 GMKWSFMPKVCSDR----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GMKWSF+P+ + PHYLVVNADESEPGTCKD +M PHTLIEG VIA++AI A Sbjct: 306 GMKWSFIPQDPATDGTAKPHYLVVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRA 365 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 AF+YVRGE + LQAAV E Y +G LG + GYD+DI+VH GAGAYICGEETA Sbjct: 366 AQAFVYVRGEVVPVLRRLQAAVAEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETA 425 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 LL+SLEG++GQPRL+PPFPA GLY PT VNNVESIA VP I+ RG W+ G G E + Sbjct: 426 LLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASP 485 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G L+S+SGHV P E + IT +L++ G L PGGSS P L Sbjct: 486 GFTLYSLSGHVTRPGQYEAPLGITLRQLLDVAGG--VRAGHRLKFWTPGGSSTPLLTDEH 543 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DY+G+ GS LGT A+ + D +T I++ + R + FY HESCG+CTPCREGT W Sbjct: 544 L-DVPLDYEGVAGAGSMLGTKALQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYW 602 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++++ERL +G +++ L +VS I G++ CALGD AA PI +K FR Sbjct: 603 LVQILERLERGEGSVEDLEKLLDVSDTILGKSFCALGDGAASPIMSSLKYFRDEYVAH-A 661 Query: 418 QYHRCNFQ 425 C F Sbjct: 662 GGRGCPFD 669 >gi|192289232|ref|YP_001989837.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] gi|192282981|gb|ACE99361.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] Length = 518 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ +S+ D + G + +++ L+ D II++V SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGIVDPRSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW + + Y+ NADE + GT DR +M +P +IEG IA A+GA Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179 +IY+R E+ E++ AA++ +G LG + D DI V GAGAYICGEET++L Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT +NNV + + VP IL GA Y+ G +RGT Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K + G++ + E + IT EL+++ GG + AV GG P + Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDEIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F HESCG+CTPCR G+ Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGA 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G I +L ++ ++ ++CALG A P+ + +F Sbjct: 455 ETVDKIIAGDRPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507 >gi|53804300|ref|YP_113850.1| formate dehydrogenase subunit beta [Methylococcus capsulatus str. Bath] gi|53758061|gb|AAU92352.1| formate dehydrogenase, beta subunit [Methylococcus capsulatus str. Bath] Length = 516 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 151/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ L D ++ G + + L I+ EV ASGLRGRGGA F Sbjct: 98 LKNQERLTFARVGITDPVCLEDYLAHGGYRGLRNALAMEPAAIVEEVTASGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 PTGIKWKTVLNAPAG-QKYVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGLAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +L A++ +G LG + G + V GAGAY+CGEETALL Sbjct: 217 GYIYLRIEYPHAGVALNQAIEAAIQAGYLGDDILGSGKRFQLEVRLGAGAYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL +G +Y+ +G +RGT Sbjct: 277 ESLEGKRGMVRFKPPLPAIEGLFGQPTVINNVISLASVPIILDKGGKYYADYGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V P +E++ +T EL+ + GG G + AV GG +P Q Sbjct: 337 LPLQLAGNVKRPGLIEKAFGMTLRELLYDYGGGSASGRP-IRAVQVGGPLGSYMPESQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + LG V+V D + D+ K F ESCG+CTPCR G+ + Sbjct: 395 DTPLDYESFSAIWAVLGHGGVVVFDDTVDMAKMARYAMEFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R++ + + + LL ++ + ++CALG +P+ + +F Sbjct: 455 EVIDRIIDDRDRAKNLALLRDLGDTMLAGSLCALGGMTPYPVLSALNHFPEDF 507 >gi|15890286|ref|NP_355958.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens str. C58] gi|15158483|gb|AAK88743.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens str. C58] Length = 518 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 149/414 (35%), Positives = 222/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F SL D + ++K + I+ +V SGLRGRGGAG Sbjct: 98 FLKNQTRLTFARCGVTDPLSLEDYRNYQGMKGLEKAVTMEPLAIVAQVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 FPTGIKWKTVADARAD-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 FIY R E+ + ++ A++ G+LGS+ G D+ V GAGAY+CGEET+L Sbjct: 217 KGFIYTRSEYPYAIKVMEKAIEIARREGILGSSVLGSGRAFDMEVRMGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA GL+G PT VNNV S+A +P I+ RGA++Y FG + G Sbjct: 277 LNSLEGKRGTVRAKPPLPALQGLFGKPTVVNNVISLASIPVIMDRGAAFYRDFGVGRSHG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ Y E + +T +L+ GG G + AV GG P + Sbjct: 337 TIPIQLAGNIRYGGLYETAFGLTLGQLVNDIGGGTITGRP-VKAVQVGGPLGAYFPVS-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 I DY+ G +G A ++V D + D++ F ESCG+CTPCR G+ Sbjct: 395 FDTIFDYEAFTAAGGLIGHAGIVVFDDTADMLHQARFALEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++++ GI +++ LL ++ + ++ ++CALG +P+ +++F Sbjct: 455 VETVDKIALGIEREKNTALLEDLCETMKFGSLCALGGFTPYPVMSALRHFPQDF 508 >gi|320532546|ref|ZP_08033355.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320135240|gb|EFW27379.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 443 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 197/415 (47%), Positives = 249/415 (60%), Gaps = 15/415 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +L + G ++ + + + +I +K SGLRGRGGAGF Sbjct: 20 LWDQER---------SWTLQAYLDHGGYEGLKQAKTLSSEDLITLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179 F+Y+RGE L +AV E SGLL + L + I H GAGAYICGEETALL Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLLDTGFGLDGQQPLRITAHAGAGAYICGEETALL 189 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++G Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPEILARGAQWYSTMGTEKSKGH 249 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +FS+SGHV +P E IT ELIE G L +PGGSS P ++ Sbjct: 250 GIFSVSGHVAHPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT WM Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421 >gi|126665578|ref|ZP_01736560.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17] gi|126630206|gb|EBA00822.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17] Length = 519 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 150/415 (36%), Positives = 225/415 (54%), Gaps = 4/415 (0%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ + D ++ G + + K I++EVKASGLRGRGGA F Sbjct: 100 LQQQQRLTFARIGITDPICIEDYIAHGGFAGLKKAAALTTQGIVDEVKASGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + ++ Y+V NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 160 PAGIKWQTVLDEPQNQQKYVVCNADEGDSGTFADRLVMECDPYMLIEGMTIAGLAVGATL 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIYVR E++ ++ L A+ G LG N G + V GAGAYICGEET+LL Sbjct: 220 GFIYVRSEYLLSQKMLDEAIRRAEVLGYLGDNVCGNGRSFRLEVRLGAGAYICGEETSLL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VP I+ G Y+ +G + GT Sbjct: 280 ESLEGKRGLVRSKPPLPAIKGLFGQPTVVNNVLSLAAVPYIMAHGGKAYADYGMGRSLGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + +E + + +++E GG + AV GG + LP Q Sbjct: 340 LPIQLAGNIKHGGLIELAFGASLRKVLEDFGGGT-FTGRPMRAVQVGGPLMAYLPESQ-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ ++G+G+G V+ D + D+ + F ESCG+CTPCR G+ + Sbjct: 398 DTPMDYEAFAKLGAGIGHGGVVAFDDTVDMGEQARFAMEFCAVESCGKCTPCRIGSVRGV 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 V++R+ G + + LL E+ + + ++CA+G +P+Q ++K+F + Sbjct: 458 EVIDRIRAGEHRDDNLVLLQELCETMVDGSLCAMGGMTPFPVQSVMKHFPEDLMA 512 >gi|224825580|ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] gi|224602501|gb|EEG08679.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] Length = 514 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 225/413 (54%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ SL+D + + + + L I+ EV SGLRGRGGA F Sbjct: 98 LKNQERLTFARVGITDPLSLADYQAHEGFAGLKRALSMDGAAIVQEVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 158 PTGIKWRTVALAEA-AQKYVVCNADEGDSGTYSDRMVMEDDPFMLIEGMTIAGLAVGATQ 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + L A+ +G LG N G + V AGAY+CGEETA+L Sbjct: 217 GYIYVRSEYPHSFDVLNQAIRLAEDAGFLGENILASGKCFKLDVRKAAGAYVCGEETAML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA++Y+ +G ++GT Sbjct: 277 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVISLASVPVILARGAAFYADYGMGRSKGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ Y VE++ +T EL+ GG G + AV GG LP Q Sbjct: 337 LPFQLAGNLKYGGLVEKAFGLTLRELLHDFGGGSASGRP-IRAVQVGGPLGAYLPESQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G ++ D + D+++ F ESCG+CTPCR G+ + Sbjct: 395 DTPLDYEAFAALGAVVGHGGIVAFDDTVDMVEQARYAMEFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ K + ++I LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIQRIQKDEKRPQQIALLRDLCDTMLHGSLCAMGGMTPYPVLSALNHFPEDF 507 >gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 436 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 138/359 (38%), Positives = 209/359 (58%), Gaps = 5/359 (1%) Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW + Y++ NADE +PG D I+ +PH +IEG +IA+++IG+ +IY Sbjct: 17 KWQL-ARDSIGVKKYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQGYIY 75 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183 VR E+ + L+ A+D+ G LG + +I + GAGA++CGEETAL+ S+E Sbjct: 76 VRAEYPLAIKRLEKAIDQAKQYGFLGKEMFGEVFSFNIEIKVGAGAFVCGEETALIASIE 135 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+G PR KPPFPA GL+G PT +NNVE+ A +P I+ RGA ++ G + ++GTK+FS Sbjct: 136 GKRGMPRSKPPFPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTKVFS 195 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ++G + VE M I+ E+I GG+ AV GG S CL ++ + Sbjct: 196 LTGKIENTGLVEVPMGISMKEIIYDIGGGVPNNRK-FKAVQIGGPSGGCLTEEKL-DLPV 253 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L ++G+ +G+ ++VMD ++ F ESCG+CTPC EGT M+ ++E Sbjct: 254 DYDSLLQVGAIMGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLEILE 313 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 ++V G A+ ++D L ++K I+ +C LG AA PI +K FR EE I +Y +C Sbjct: 314 KIVNGRAKIEDLDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYKKC 371 >gi|329944207|ref|ZP_08292466.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328530937|gb|EGF57793.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 443 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 198/415 (47%), Positives = 247/415 (59%), Gaps = 15/415 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +L + G ++ + K + +I +K SGLRGRGGAGF Sbjct: 20 LWDQER---------SWTLQAYLDHGGYEGLKKAKTLSSEDLITLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179 F+Y+RGE L AV E SGLL + L + I H GAGAYICGEETALL Sbjct: 130 FVYLRGEVPHVYRRLLGAVREATESGLLDTGFGLDGQQRLRITAHAGAGAYICGEETALL 189 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++G Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSKGH 249 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +FS+SGHV P E IT ELIE G L +PGGSS P ++ Sbjct: 250 GIFSVSGHVARPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT WM Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421 >gi|326772147|ref|ZP_08231432.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus C505] gi|326638280|gb|EGE39181.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus C505] Length = 443 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 198/415 (47%), Positives = 249/415 (60%), Gaps = 15/415 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQ+R +L + G ++ + K + +I +K SGLRGRGGAGF Sbjct: 20 LWDQER---------SWTLQTYLDHGGYEGLKKAKTLSCEELIGLIKDSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P V P YLVVNADESEPGTCKD + P LIEG I S AIG A Sbjct: 71 TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179 F+Y+RGE L +AV E SGLL + L + I H GAGAYICGEETALL Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLLDTGFGLDGQQRLRITAHAGAGAYICGEETALL 189 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WYS G E ++G Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSKGH 249 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +FS+SGHV +P E IT ELIE G L +PGGSS P ++ Sbjct: 250 GIFSVSGHVAHPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + E GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT WM Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++M RL G +++ L ++ NI GR+ CALGDA+A P+ IK FR E Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421 >gi|288959751|ref|YP_003450091.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510] gi|288912059|dbj|BAI73547.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510] Length = 526 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q+R+ F + S+ D + G + ++ L + I+ V SGLRGRGGAGF Sbjct: 102 FKKQERLTFARCGIIDPLSVEDYRAHGGFRGLENALAMSQAEIVKVVTDSGLRGRGGAGF 161 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+ + + +D ++ NADE + GT DR I+ +P LIEG IA+ A+GA Sbjct: 162 PTGIKWNTVMQAKAD-EKFVCCNADEGDSGTFADRMIIEGDPFCLIEGMTIAAIAVGATS 220 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ +L+ A+ Y G LG N + V GAGAYICGEETA+L Sbjct: 221 GYVYMRSEYPHATATLRHAIKLAYDEGWLGDNIHGTSRTFHLDVRVGAGAYICGEETAML 280 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+ VP IL RGA +Y FG +RGT Sbjct: 281 ESLEGKRGMVRAKPPLPALEGLFGKPTVVNNVLSLCSVPIILDRGAEYYRDFGVGRSRGT 340 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE++ IT EL+ GG G + AV GG LP Q Sbjct: 341 LPFQLAGNLKHGGIVEKAFGITLHELLYDFGGGTITGRP-IRAVQVGGPLGAYLPPSQ-F 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + +G ++V D S D+ + F ESCG+CTPCR G+ M Sbjct: 399 DLPKDYEAFAAQEAMVGHGGIVVFDDSVDMARQARFAMEFCVAESCGKCTPCRIGSTRGM 458 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G ++LL ++ + ++CA+G +P++ +K+F Sbjct: 459 ETLDKIIAGRNVDANLELLADLCDVMVDGSLCAMGGMTPYPVRSAVKHFPEDF 511 >gi|283778529|ref|YP_003369284.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068] gi|283436982|gb|ADB15424.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068] Length = 450 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 183/425 (43%), Positives = 251/425 (59%), Gaps = 17/425 (4%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + + G + + K+L+ + + VK+SGLRGRGGAGF TG+KW+ Sbjct: 8 LLAQVGKPESYTRKVYERDGGYSALKKVLKMTPNDVKETVKSSGLRGRGGAGFPTGLKWT 67 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F+P+ Y +NADESEPGT +R +M +PH ++EG +IA FA A A+ Y+R Sbjct: 68 FLPQNHPGPI-YFCLNADESEPGTFNNRILMEDDPHQVLEGIIIACFATQARAAYFYMRC 126 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ E ++ A++ECY +G LG N GY +DI +H GAGAYICGEET L+ESLEGK+ Sbjct: 127 EYPTAYERVKRAIEECYEAGYLGENILGSGYTLDIHLHRGAGAYICGEETGLIESLEGKR 186 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR---------ENNR 237 PR+KPPFPA G + PT VNNVE+ A V I R G W+ G + Sbjct: 187 AWPRIKPPFPAVEGAFRKPTVVNNVETCACVTQIFRNGVDWFKSIGIAPDPNNPRDAGSY 246 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 G KL+ +SGHVN P E + IT +LI GG+ G AVIPGG S+ L + Sbjct: 247 GPKLYCLSGHVNKPGCYEAPLGITVKDLINDFGGGVWKGRKA-KAVIPGGISMGLLTGDE 305 Query: 298 MRGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + +D++G + G GLGTAAV+VMD T ++ + F+ HESCGQCTPCREGT Sbjct: 306 LH-CPLDFNGPGKFGCLGLGTAAVVVMDDQTSMVDFLLNSCRFFSHESCGQCTPCREGTS 364 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKN---IEGRTICALGDAAAWPIQGLIKNFRPLIE 413 W R+M R+ G + +++DLL E+ + + G TIC L D AAWPI+ IK FR +E Sbjct: 365 WATRMMTRIKHGQGRLKDLDLLAEIGETIGIMPGSTICGLADGAAWPIKNCIKKFRGELE 424 Query: 414 ERIDQ 418 E I + Sbjct: 425 EFIKR 429 >gi|77917824|ref|YP_355639.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77543907|gb|ABA87469.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 425 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 176/428 (41%), Positives = 252/428 (58%), Gaps = 7/428 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 M T + +F N Q L G + + K L+ + EVKASGLRGRGGAG Sbjct: 1 MRTCEPLLFKNRRAGQTVFLEGYRKTGGYRGLQKALQDMTPASVREEVKASGLRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSF P + YLV N DE EPGT KDR ++ +PH L+EG +I+ +A+G Sbjct: 61 FPTGVKWSFFPSDNAG-EKYLVCNGDEMEPGTFKDRQLLLADPHHLLEGVIISCYALGIG 119 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+I++R + + +L+ A+ E +GLLG N G+ ++ VH AG YICGEETAL Sbjct: 120 TAYIFLRDAYRQCAANLERAIAEAEEAGLLGDNILGSGFCCEVHVHRSAGRYICGEETAL 179 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNR 237 L SLEG + PR KPPFPA GL+G PT +NN+E++A +P I+ GA+WY G E Sbjct: 180 LNSLEGLRPNPRSKPPFPAVKGLFGKPTALNNIETLANIPHIITGGAAWYKGLALTEQGA 239 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL+ ++GH+ PC VE + + ELI GG+ + A +PGG+S P L A Sbjct: 240 GTKLYGLAGHLETPCCVELPLGMPLGELIRDFGGGVWQN-RSFKACLPGGASTPYLTAEH 298 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +DY+ L+++G+ LGT V+V D T ++ L F+ ESCG CTPCR+G Sbjct: 299 M-DVALDYEPLEQVGTRLGTGGVVVFDDRTCMVAVTLNLLRFFARESCGWCTPCRDGLPL 357 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ERL +G + ++ +L E +I GR+ CAL A P+ GL+++F +E+ + Sbjct: 358 VCWLLERLERGEGSREDLAMLREQLLHINGRSFCALALGAMGPVDGLLRHFAEELEDHV- 416 Query: 418 QYHRCNFQ 425 + RC FQ Sbjct: 417 RLGRCPFQ 424 >gi|260466532|ref|ZP_05812721.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075] gi|259029681|gb|EEW30968.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075] Length = 518 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 215/414 (51%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ G+ SL S G + + I+ +V SGLRGRGGAG Sbjct: 98 FLAKQTRLTFARCGINDPLSLDAYKSLGGLKGLQNAVAMSPADIVKQVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + D Y+V NADE + T DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLDTTGD-RKYIVCNADEGDSATFADRMIMEGDPFVLIEGMAIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y+R E+ + AV+ +G+LG+N D+ + GAGAY+CGEET+L Sbjct: 217 KGFVYIRSEYPHAVAVMNKAVEVARKAGVLGTNVLGSPNAFDMEIRVGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA GL+G PT +NNV S+A VP ++ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGVVRAKPPLPAIQGLFGKPTVINNVISLASVPVVMDKGAAFYKDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T E+++ GG G + AV GG P + Sbjct: 337 TIPIQIAGNVKHGGLFETAFGLTLGEIVDDIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ + +G A + V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEEFAKRDGLIGHAGITVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++RL GI ++ + L+ ++ ++ ++CALG +P+ I +F Sbjct: 455 VETIDRLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPYPVMSSITHFPEDF 508 >gi|162452499|ref|YP_001614866.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161163081|emb|CAN94386.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 450 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 194/444 (43%), Positives = 260/444 (58%), Gaps = 25/444 (5%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML + N G L+ G + + L R+ ++ E+KA+ +RGRGGAGF Sbjct: 1 MLRLTRYLTKNYDTPDGHKLAVYEKGGGYQQAKRALGMTREALVEEMKAANIRGRGGAGF 60 Query: 61 STGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 + G+KWSFMP +RPHYLV+NADE EPGT KDR +M PH ++EGC+I F IGAH Sbjct: 61 AMGVKWSFMPWPPKPERPHYLVINADEGEPGTFKDRTLMEKNPHAVVEGCIIGCFGIGAH 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IYVR E + L A++E A G LG + Y V++ VH GAGAYICGEET+L Sbjct: 121 AAYIYVRDELHLSKARLWGAIEEARAKGYLGKRPFGIDYPVEVYVHTGAGAYICGEETSL 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE---N 235 L SLEGK+G+PRLKPPFPA G +G PTTVNN+E+IA VPT L G +S Sbjct: 181 LNSLEGKRGEPRLKPPFPAQFGAFGMPTTVNNLETIAAVPTALELGGENFSKLSSLHHLK 240 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + G +LF +SGHVN P E ++ +T +LI ++ GG++ G LL VIPGGSS P L A Sbjct: 241 DGGCRLFGVSGHVNNPGIFEAAVGVTLRDLIYEYGGGVKHG--KLLGVIPGGSSCPILRA 298 Query: 296 GQM------------------RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 ++ + D + +G+ LGT IV+ + A+ L Sbjct: 299 DEVVNAPSDKSPLHPWHGQSVLDVPLGVDTFRALGTMLGTCCAIVLSDKACPVLAMHNLM 358 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 FY+HESCGQCTPCREG+ W+ R+++R+V G E+D L+E++ NI G TICA G+ Sbjct: 359 RFYRHESCGQCTPCREGSAWIHRILDRIVHGEGTIEELDRLHEIADNIMGNTICAFGEGT 418 Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421 A P G ++ FR E I R Sbjct: 419 AMPALGFLRKFRKEFEAYIQTKGR 442 >gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] Length = 780 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 151/424 (35%), Positives = 241/424 (56%), Gaps = 6/424 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 L+ Q R+ T YGL + + ++RG ++ + K + K R II+ + SGLRGRGG Sbjct: 292 FLSGQKRVSTEGYGLMSPLDIDEYIARGGFEALKKAITSKSRQEIIDTILRSGLRGRGGG 351 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW + Y++ N DE +PG DR ++ P +IEG +IA +A+GA Sbjct: 352 GFLTGRKWELVA-ASDQPEKYVICNGDEGDPGAFMDRILLESYPLRVIEGMIIAGYAVGA 410 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 Y+R E+ + + A++ C +G + + +I + GAGA++CGEETA Sbjct: 411 KEGIFYIRAEYPQAVIRTRKAIELCRERNWVGDHIFGSDFSFEISIFEGAGAFVCGEETA 470 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PP+PA GL PT +NNVE+++ V I+ GA Y G EN++ Sbjct: 471 LIASIEGERGFPRQRPPYPAVEGLNKRPTLINNVETLSQVSYIVNHGADEYRKIGTENSK 530 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+F+++G V + +E M T +++IE GG+ GG + L AV GG S C+PA Sbjct: 531 GTKVFALAGKVRHGGLIEVPMGTTLNQIIEDIGGGVEGG-EKLRAVQIGGPSGGCIPA-H 588 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A +D+D L +MG+ +G+ ++V+ S ++ F +ESCG+CT CR G Sbjct: 589 LCDAKVDFDALIQMGAIMGSGGMVVLSESNCMVDVARYFLAFTCNESCGKCTFCRVGIRR 648 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+ ++++L G A+ +ID L E++ +++ +C LG A P+ +K FR EE + Sbjct: 649 MLDILDKLCTGKAEMADIDKLEELALSVKKAALCGLGKTAPNPVLATLKYFREEYEEHVR 708 Query: 418 QYHR 421 R Sbjct: 709 GICR 712 >gi|322436008|ref|YP_004218220.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9] gi|321163735|gb|ADW69440.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9] Length = 442 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 194/418 (46%), Positives = 261/418 (62%), Gaps = 7/418 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD---WIINEVKASGLRGRGGAGF 60 D+ + +G ++ + + V + +G + WIIN +KASGLRGRGGAGF Sbjct: 9 DEAIVLKRRFGQGAANIDKYLELDGYKAVQMAIAQGPEMPTWIINVMKASGLRGRGGAGF 68 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSF+PKV S++P Y++VN DESEPGTCKD I +PH +IEG +IA AIG+ Sbjct: 69 PTGLKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLEDPHAVIEGTMIAGLAIGSKL 127 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+RGE+ + ++ AV E YA G LG N G D DII GAGAY GEE+AL+ Sbjct: 128 GFIYLRGEYRYLLKIVEKAVAEAYAKGFLGKNIFGSGIDFDIITQTGAGAYEVGEESALM 187 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G PR+KPPFPA VGLYG PT +NN E+IA P IL G Y+ G E N GT Sbjct: 188 ESLEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIASAPHILLMGGEAYAKLGSERNGGT 247 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +LF ISGHV P E M + I + G G L AV+PGGSS P L A ++ Sbjct: 248 RLFGISGHVERPGVYELPMGYNLKKAIYEVAG-GVKGGKKLKAVVPGGSSCPVLTADEL- 305 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+D + + G+ LG+ ++V+D + I++ R+ FY+HESCG C PCREGT W+ Sbjct: 306 DVGLDFDQMGKAGTMLGSGGIVVLDETVSIVEFALRVISFYQHESCGWCIPCREGTDWIK 365 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + + R+ G K+++D + +++N+ GRT C LGDAAA P G +K FR E+ ID Sbjct: 366 KTLARVYAGGGSKKDVDNVQYLAENMMGRTFCPLGDAAAMPTLGFVKKFRKEFEDYID 423 >gi|163760124|ref|ZP_02167207.1| putative nad-dependent formate dehydrogenase beta subunit protein [Hoeflea phototrophica DFL-43] gi|162282523|gb|EDQ32811.1| putative nad-dependent formate dehydrogenase beta subunit protein [Hoeflea phototrophica DFL-43] Length = 518 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 217/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ G+ SL D ++G + + + I+ +V SGLRGRGGAG Sbjct: 98 FLKRQTRLTFARCGITDPLSLEDYRAQGGLAGLTNAVAMPPEAIVAQVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P +IEG VIA A GA Sbjct: 158 FPTGIKWKTVLEAD-GAQKYIVCNADEGDSGTFADRMIMEGDPFVVIEGMVIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ + AV+ + +LG S + D+ + GAGAY+CGEETAL Sbjct: 217 KGYVYLRSEYPHAINVMNRAVEIARENNILGTSVLGSPHGFDMEIRVGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA+ G G PT VNNV S+A VP I+ +GA +Y FG +RG Sbjct: 277 LESLEGRRGVVRAKPPLPAHKGFLGRPTVVNNVISLASVPIIMDKGADFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T ELI+ GG G + AV GG P + Sbjct: 337 TIPVQIAGNVKHGGLFEAAFGMTLGELIDDIGGGTATGRP-VKAVQVGGPLGAYFPRE-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAFEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V++ + GI +++ L+ ++ ++ ++CALG +P+ +F Sbjct: 455 VEVIDNIRDGIEPDKQVALMSDLCNTMKFGSLCALGGFTPYPVMSAFTHFPDDF 508 >gi|269977611|ref|ZP_06184578.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1] gi|306817873|ref|ZP_07451612.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC 35239] gi|307701356|ref|ZP_07638377.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris FB024-16] gi|269934214|gb|EEZ90781.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1] gi|304649352|gb|EFM46638.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC 35239] gi|307613517|gb|EFN92765.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris FB024-16] Length = 481 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 188/408 (46%), Positives = 252/408 (61%), Gaps = 12/408 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G++ +L +RG + ++K ++N VK SGLRGRGGAGF TG+KW Sbjct: 19 ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD + PH L+EG I S AI AFIY+R Sbjct: 79 SFLPPDDGG-PRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE + L AA+ E A+G+LG + I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLG-------GLKITAHAGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GL+ PT +NNVE+I+ V I + +WY+ G E ++G +FSISG Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV +P E IT +L+ +CGGIR G + L GGSS P ++ + Y+ Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHE-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ I R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 G Q+ +I+ L ++ I GR CALGDAA P++ I +FR E+ Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFREEFEQ 415 >gi|294506289|ref|YP_003570347.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Salinibacter ruber M8] gi|294342617|emb|CBH23395.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Salinibacter ruber M8] Length = 453 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 178/398 (44%), Positives = 257/398 (64%), Gaps = 7/398 (1%) Query: 23 SMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G +D + ++LE + +EVKASGL GRGGAGF TG+KW+FMP+ +RP + Sbjct: 34 YEEHGGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPE-PDERPRF 92 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 + VNADESEPGT KDR +M + PH ++EG ++A +A+ A++Y+RGE+ L+ Sbjct: 93 IGVNADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQ 152 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++ Y +G +G N + +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA Sbjct: 153 LENAYEAGYVGENIMGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQ 212 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 G++G PTT+NN E++A VP I+ +G YS G + G L+ +SGHV P E Sbjct: 213 SGIFGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPT 272 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 + ++I CGG+ D L AV+PGGSSVP +PA Q+ G M+ + L E+GS GT Sbjct: 273 GMLLTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTF 331 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 +V+D TD++ + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G + R+IDLL Sbjct: 332 CPLVLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLL 391 Query: 379 YEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415 E+ N+ GRTICA D A P++ +K FR + Sbjct: 392 LELCDNMDGGRTICAFADGAVGPVRATVKRFREEFVAK 429 >gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces bingchenggensis BCW-1] Length = 626 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 160/404 (39%), Positives = 226/404 (55%), Gaps = 10/404 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+ + + SL D + G + + + G +I EV +GL GRGGA F TG KW Sbjct: 213 RLLRRVGVVDPASLDDYRAHGGYAALRRAFALGPAGVIREVGDAGLVGRGGAAFPTGRKW 272 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + D PHYLV NADESEPGT KDR +M +P+ LIE IA + IGAH ++Y+R Sbjct: 273 DATARQP-DHPHYLVCNADESEPGTFKDRVLMEGDPYALIEAMTIAGYTIGAHHGYLYLR 331 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ R L+ A+ + A GLLG + G DI + GAGAYICGEETA+ S+EG+ Sbjct: 332 GEYPRALARLEHAIGQARARGLLGPDVLGQGIAFDIEIRRGAGAYICGEETAIFNSIEGR 391 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR KPPFP GL+G PT VNNVE++ V IL GA YS G E + GTKLF +S Sbjct: 392 RGEPRSKPPFPVEQGLFGKPTAVNNVETLVNVLPILTEGAEAYSSVGTETSTGTKLFCVS 451 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V+ P E T EL++ L AV+ GG++ + ++ + + Sbjct: 452 GAVDRPGVYELPFGATLRELLDLAG-----PPPALRAVLLGGAAGGFVRPDEL-DVPLTF 505 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G + G+ LG+ V+V+D S ++ + + R++ F++ ESCGQC PCR GT + R+ Sbjct: 506 EGTRAAGTTLGSGVVLVLDESVELPRVLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRI 565 Query: 366 --VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 G A +I LL EV + + +IC LG A ++ I Sbjct: 566 KDRTGAAAAGDIALLREVGQAMRDASICGLGQTAWNAVESAIDR 609 >gi|227874589|ref|ZP_03992752.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|227844798|gb|EEJ54944.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] Length = 481 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 188/408 (46%), Positives = 252/408 (61%), Gaps = 12/408 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G++ +L +RG + ++K ++N VK SGLRGRGGAGF TG+KW Sbjct: 19 ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YLVVNADESEPGTCKD + PH L+EG I S AI AFIY+R Sbjct: 79 SFLPPDDGG-PRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE + L AA+ E A+G+LG + I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLG-------GLKITAHAGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GL+ PT +NNVE+I+ V I + +WY+ G E ++G +FSISG Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV +P E IT +L+ +CGGIR G + L GGSS P ++ + Y+ Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHE-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ I R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 G Q+ +I+ L ++ I GR CALGDAA P++ I +FR E+ Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFREEFEQ 415 >gi|118594391|ref|ZP_01551738.1| formate dehydrogenase, beta subunit [Methylophilales bacterium HTCC2181] gi|118440169|gb|EAV46796.1| formate dehydrogenase, beta subunit [Methylophilales bacterium HTCC2181] Length = 515 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 156/413 (37%), Positives = 232/413 (56%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ ++D ++ + K +E I+NEV SGLRGRGGA F Sbjct: 99 LKNQERLTFARVGITDPLDINDYEKHAGFNGLRKAIELEPQLIVNEVTDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S + Y+V NADE + GT DR IM ++P LIEG +IA A+GA Sbjct: 159 PTGIKWQTVLNTPS-KTKYIVCNADEGDSGTFSDRMIMENDPFVLIEGMIIAGMAVGAEY 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +E L A++ G LG+N GY+ D+ V AGAYICGEET+LL Sbjct: 218 GYIYLRSEYPDAQEVLNKAINIAKEKGFLGNNILSSGYNFDLEVTRAAGAYICGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GLYG PT VNNV ++A VP I+ +GAS+Y+ FG ++GT Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLYGKPTAVNNVITLATVPIIMDKGASFYADFGMGRSKGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E++ I+ EL+ GG + + AV GG LP GQ Sbjct: 338 LPIQLAGNLKQTGLIEKAFGISLRELLYDFGGG-SFTGNPIKAVQVGGPLGAFLPEGQ-F 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ E+ + +G ++ D +TD+ K F ESCG+CTPCR G+ M Sbjct: 396 DTPLDYEKFSEINAVVGHGGIVAFDDTTDMAKMARYSFEFCAIESCGKCTPCRIGSTRGM 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++++ GI Q + LL ++ + + ++CA+G +P+ + F Sbjct: 456 EVIDKIKGGIDQDKNEKLLRDLGETMVNGSLCAMGGMTPFPVISALNFFPKDF 508 >gi|86747851|ref|YP_484347.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] gi|86570879|gb|ABD05436.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] Length = 518 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 147/413 (35%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + +S+ D + G + +++ L+ D II+++ SGLRGRGGAGF Sbjct: 98 LKRQTRLTFVRCGIIDPRSIDDYRAHGGYKGLERALKMSSDAIIDDIVKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW + + Y+ NADE + GT DR +M +P +IEG IA A+GA Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179 +IY+R E+ E++ AA++ +G LG + D DI V GAGAYICGEET++L Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G PT +NNV + + VP IL GA Y+ G +RGT Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K + G++ + E + IT ELI+ GG + AV GG P + Sbjct: 337 KPIQLGGNIRHGGLFEVAFGITLGELIDDIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F ESCG+CTPCR G+ Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGA 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G I +L ++ ++ ++CALG A P+ + +F Sbjct: 455 ETVDKIIAGDRPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALAHFPEDF 507 >gi|327188943|gb|EGE56135.1| formate dehydrogenase protein, beta subunit [Rhizobium etli CNPAF512] Length = 553 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SLSD + G + + + I+ EV SGLRGRGGAG Sbjct: 133 FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 192 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 193 FPTGIKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 251 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 FIY R E+ ++ AV +G+LG + DI V GAGAY+CGEETAL Sbjct: 252 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSARAFDIEVRTGAGAYVCGEETAL 311 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 312 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 371 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ +++++ GG G + AV GG P + Sbjct: 372 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 429 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 430 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 489 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++ +GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 490 VETADKIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 543 >gi|349637|gb|AAA16062.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 431 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 159/381 (41%), Positives = 226/381 (59%), Gaps = 5/381 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA G++G PT VNNVE++ VP IL G WY + + GTKL SG V P Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E++E + GG+R G A PGG+ L + M+++ + + GS Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379 Query: 374 EIDLLYEVSKNI-EGRTICAL 393 +I+ L ++ + + G+T CA Sbjct: 380 DIETLEQLCRFLGPGKTFCAH 400 >gi|15966763|ref|NP_387116.1| putative NAD-dependent formate dehydrogenase beta subunit protein [Sinorhizobium meliloti 1021] gi|307301591|ref|ZP_07581350.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C] gi|15076035|emb|CAC47589.1| Putative NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium meliloti 1021] gi|306903289|gb|EFN33878.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C] Length = 518 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 148/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SL D + +++ + I+ EV SGLRGRGGAG Sbjct: 98 FLKRQTRLTFARCGVIDPLSLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLEA-RGPRKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + AA++ A+G+LG++ + D+ V GAGAY+CGEET+L Sbjct: 217 KGYIYTRSEYPHAIAVMSAAIEIARAAGVLGASVLGSAHAFDMEVRTGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ PT +NNV S+A VP IL +GA +Y FG +RG Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T E++++ GG + AV GG P + Sbjct: 337 TIPLQIAGNVKHGGLFETAFGLTLGEIVDEIGGGTASARP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V +R+ GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|241206610|ref|YP_002977706.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860500|gb|ACS58167.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 518 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 218/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F SL D + G + + + I+ E+ SGLRGRGGAG Sbjct: 98 FLKEQTRLTFARCGVTDPLSLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + + Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 158 FPTGIKWKTVLEAAGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ + AV +G+LG + G+ DI V GAGAY+CGEETAL Sbjct: 217 KGFVYTRSEYPHAIAVMTEAVGIAREAGILGPSVLGSGHTFDIEVRAGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ +++++ GG G + AV GG P + Sbjct: 337 TIPLQIAGNVRYGGLFETAFGLSLGDIVDRIGGGTVTGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++ GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|71065155|ref|YP_263882.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4] gi|71038140|gb|AAZ18448.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4] Length = 474 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 161/406 (39%), Positives = 235/406 (57%), Gaps = 9/406 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L+ S ++ + L + D + +K + ++GRGGAGF G+KWS M P Sbjct: 54 DLATYESLRGFEALKIALNQSPDDTLKTIKEAVVKGRGGAGFPAGIKWSLMA-PPDGGPR 112 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADE EPGT KDR +M P LIEG +I+++AIGA +I++RGE+I E L A Sbjct: 113 YLVCNADEMEPGTFKDRLLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTA 172 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+ L+G N + D+ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 173 AIEELRANNLIGDNILGSDFSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQ 232 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253 G +G PT VNNVE++ V I+ G+ WY G GTKLF SG VN P Sbjct: 233 VAGAWGRPTVVNNVETLHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGL 292 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E+IE GG+ L A +PGG+S L A + ++D+D +++ GS Sbjct: 293 WELPFGYTAREIIEDFAGGM-QEGRTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGS 350 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +GT ++V+D D++ + L +F++ ESCG CTPCR+G W ++++ + G Q Sbjct: 351 RMGTGLLMVVDEEQDMVPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQMG 410 Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++ L +++++ G+T CA A P+ IK FRP +++I Q Sbjct: 411 DVEKLEGLTRDLWIGKTFCAHAPGAMEPLMSAIKYFRPEFDQKITQ 456 >gi|83814696|ref|YP_444543.1| respiratory-chain NADH dehydrogenase 51 Kd subunit family protein [Salinibacter ruber DSM 13855] gi|83756090|gb|ABC44203.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Salinibacter ruber DSM 13855] Length = 464 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 178/398 (44%), Positives = 257/398 (64%), Gaps = 7/398 (1%) Query: 23 SMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 G +D + ++LE + +EVKASGL GRGGAGF TG+KW+FMP+ +RP + Sbjct: 45 YEEHGGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPE-PDERPRF 103 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 + VNADESEPGT KDR +M + PH ++EG ++A +A+ A++Y+RGE+ L+ Sbjct: 104 IGVNADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQ 163 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++ Y +G +G N + +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA Sbjct: 164 LENAYEAGYVGENIMGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQ 223 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 G++G PTT+NN E++A VP I+ +G YS G + G L+ +SGHV P E Sbjct: 224 SGIFGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPT 283 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 + ++I CGG+ D L AV+PGGSSVP +PA Q+ G M+ + L E+GS GT Sbjct: 284 GMLLTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTF 342 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 +V+D TD++ + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G + R+IDLL Sbjct: 343 CPLVLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLL 402 Query: 379 YEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415 E+ N+ GRTICA D A P++ +K FR + Sbjct: 403 LELCDNMDGGRTICAFADGAVGPVRATVKRFREEFAAK 440 >gi|237809384|ref|YP_002893824.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187] gi|237501645|gb|ACQ94238.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187] Length = 444 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 167/407 (41%), Positives = 240/407 (58%), Gaps = 6/407 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q + ++ + +K L + + VKA+GLRGRGGAGF TG+KWS +P Sbjct: 18 HQPVWFEEYRAKQGYVGAEKALAIAPTAVTDLVKAAGLRGRGGAGFPTGVKWSLVPMDPK 77 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 Y++ NADE EPGT KDR +M PH LIEG +I ++A+ A+ +I++RGE+I + Sbjct: 78 FDKKYILCNADEMEPGTYKDRLLMEQLPHQLIEGMLIGAYALQAYRGYIFLRGEYIEAAQ 137 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E +G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 138 RLRQAIEEATKAGFLGKNILGTGFNFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 197 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA G +G PT VNNVE++ +P+I++ G WY G G+ N+ GTKL SG VN P Sbjct: 198 PFPALAGAWGKPTCVNNVETLNNIPSIMQNGVDWYKGISAGKSNDTGTKLMGFSGRVNNP 257 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L Q MD+D + + Sbjct: 258 GVWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLT-EQHLDLPMDFDSIGKA 315 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D +++ L F+ ESCG CTPCREG W +++++ L KG Q Sbjct: 316 GSRLGTALAMAVDNEINMVSLTLNLEKFFSRESCGWCTPCREGLPWSVKILQALEKGEGQ 375 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + +I+ L ++ +++ G+T CA A P+Q IK FR E I+ Sbjct: 376 RGDIETLEKLCRDLGPGKTFCAHAPGAVEPLQSAIKYFRAEFEAGIN 422 >gi|71280105|ref|YP_268785.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H] gi|71145845|gb|AAZ26318.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H] Length = 534 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 150/420 (35%), Positives = 226/420 (53%), Gaps = 11/420 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + + L+ I++E+K SGLRGRGGA F Sbjct: 100 LAKQQRLTFQRAGIIDPLSIEDYIKHQGFIGLSNALKLSAQGIVDEMKISGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 TG+KW + SD+ Y+V NADE + GT DR IM +P +LIEG +IA A+G Sbjct: 160 PTGIKWQTVLDAKVTSSDQKKYIVCNADEGDSGTYSDRLIMEADPFSLIEGMIIAGIAVG 219 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY+R E+ + ++ L+ A+ Y LG + D+ V GAGAYICGEET Sbjct: 220 ATQGYIYLRSEYPQAQKILEQAIANAYQDNYLGDAIQGTQHQFDLEVRIGAGAYICGEET 279 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 +LLESLEGK+G R KPP PA GL+G PTTVNNV S+A VPTIL +GA +Y +G + Sbjct: 280 SLLESLEGKRGLVRAKPPLPAITGLFGQPTTVNNVISLATVPTILAKGAQYYQDYGVGRS 339 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 RGT F ++G++ VE + T +L+ G + + A+ GG LP Sbjct: 340 RGTLPFQLAGNIKQGGLVELAFGTTLADLVNDFGAGT-YTGETMKAIQVGGPLGAYLPKY 398 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q +DY+ +G+ LG ++V D S + + F ESCG+CTPCR G+ Sbjct: 399 Q-WQTPLDYEAFSSIGAVLGHGGIVVFDDSVSMTEQARFAMEFCGVESCGKCTPCRIGST 457 Query: 357 WMMRVMERLVKGIAQKREI----DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V+++++ I +LL ++ + ++CA+G P++ ++++F Sbjct: 458 RGVEVIDKMITAHEHDEPIEALNELLVDLCDTMVDGSLCAMGGMTPIPVRSVMQHFSDDF 517 >gi|13474499|ref|NP_106068.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium loti MAFF303099] gi|14025253|dbj|BAB51854.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium loti MAFF303099] Length = 518 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 148/414 (35%), Positives = 215/414 (51%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ G+ SL S G + + I+ +V SGLRGRGGAG Sbjct: 98 FLAKQTRLTFARCGINDPLSLDAYKSLGGLKGLQNAVAMAPADIVKQVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S+ Y+V NADE + T DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLDTTSE-RKYIVCNADEGDSATFADRMIMEGDPFVLIEGMAIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y+R E+ ++ AV+ +G+LG N D+ + GAGAY+CGEET+L Sbjct: 217 KGFVYIRSEYPHAVATMNKAVEIARKAGVLGVNVLGSPNAFDMEIRVGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA GL+G PT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGVVRAKPPLPAIQGLFGKPTVINNVISLASVPIIMDKGAAFYKDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V E + +T E+++ GG G + AV GG P + Sbjct: 337 TIPIQIAGNVRNGGLFETAFGLTLGEIVDDIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ + +G A + V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEEFAKRDGLIGHAGITVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++RL GI ++ + L+ ++ ++ ++CALG +P+ I +F Sbjct: 455 IETIDRLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPYPVMSSITHFPEDF 508 >gi|219851497|ref|YP_002465929.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c] gi|219545756|gb|ACL16206.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c] Length = 562 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 142/418 (33%), Positives = 227/418 (54%), Gaps = 6/418 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHW-DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q I + + + ++ G + + + + +I+ V+ SGLRGRGGAGF Sbjct: 148 QQKVILRAAGLIDPGDIEEYIAVGGYSAALSALTTMEPEAVIDVVEKSGLRGRGGAGFPA 207 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCA 121 G+KW K + Y++ NADE +PG +R+ M +PH LIEG ++ ++AIG Sbjct: 208 GLKWRITRKETA-TEKYIICNADEGDPGAYMNRNEMESDPHMLIEGMILGAYAIGGVKTG 266 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IY+R E+ E L A+++ GLLG + G+ D+ + GAGA++CGE TAL+ Sbjct: 267 VIYIRAEYPLAIERLTKAIEQAREYGLLGDDILGTGFSFDLHLAIGAGAFVCGESTALVA 326 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG+ G+P +PP + GL+G PT +NNVE+ VP I+ RGA WY+ G N GTK Sbjct: 327 SIEGRTGRPHPRPPRLTDKGLWGKPTDLNNVETWCNVPVIVSRGAGWYAAIGAPGNTGTK 386 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+ G V+ VE + T + ++ G GG + AV GG S C+P ++ Sbjct: 387 VFSLVGKVDRVGLVEVPLGTTLERIVIDIGNGGAGG-KAVKAVQTGGPSGGCIPV-RLFD 444 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDY+ L +GS +G+ ++VMD T ++ F ESCG+C PCREG + Sbjct: 445 TPMDYESLNRVGSIMGSGGIVVMDEDTGMVDIARYFINFAIGESCGKCVPCREGLKHTLL 504 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ RL+ G ++++ L ++ + ++C LG +A P+ ++ FR E I++ Sbjct: 505 LLNRLLAGKGTGQDLETLALLADTVAKTSLCGLGQSAPNPVLTTLEYFRDEYEGLIER 562 >gi|15606024|ref|NP_213401.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5] gi|7387960|sp|O66841|NUOF_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|2983201|gb|AAC06800.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5] Length = 426 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 169/399 (42%), Positives = 234/399 (58%), Gaps = 11/399 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + + G + ++K L + II+ V S LRGRGGAGF TG KW F + P Sbjct: 29 HSIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPG--P 86 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y + NADESEPGT KDR I+ +PH LIEG +I+S+AIGA+ A+IY+RGE+ L+ Sbjct: 87 RYFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILR 146 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E G LG N G+D++I V GAGAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 147 DAIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYP 206 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE+IA VP I+ G Y G + G KLF +SG V P E Sbjct: 207 VQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYEL 266 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M+ T E+I K+ GG G ++ C + ++ MDY L G Sbjct: 267 PMNTTLREVIFKYAGGTLGNKKVKAVFS---GALDCFSSEEL-DIPMDYSPL----GFGG 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T VIV+ DI++A +++ FY+HE+CGQCTPCR G ++E++ KG A +++ + Sbjct: 319 TGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWE 378 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 V++NI+ +IC LG A I+ ++ F E+ Sbjct: 379 GFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKY 417 >gi|121609341|ref|YP_997148.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2] gi|121553981|gb|ABM58130.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2] Length = 518 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 222/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL+D + + + + L I+ +V SGLRGRGGA F Sbjct: 99 LRQQERLTFARMGVTDPLSLADYQAHEGFAGLRRALALSPSEIVQQVLDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + S Y+V NADE + GT DR M +P LIEG IA+ A GA Sbjct: 159 PAGIKWKTVAAASS-AQKYIVCNADEGDSGTYSDRMAMEGDPFMLIEGMTIAAVATGATQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +++ A+ + A+G GSN K G + V AGAY+CGEETA+L Sbjct: 218 GYIYIRSEYPHAIATMREAIAKASAAGFSGSNILKSGKTFHLEVRKAAGAYVCGEETAML 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G P+ +NNV + A VP IL RGA++Y+ +G + GT Sbjct: 278 ESIEGKRGVVRAKPPIPALKGLFGQPSVINNVITFASVPIILARGAAYYTDYGVGRSSGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + +E++ IT +L+ GG G + AV GG +P + Sbjct: 338 LPFQLTGNIKHGGLIEKAFGITLRQLLFDFGGGSASGRP-IKAVQVGGPLGAYVP-ERYW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G +G ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 396 DVPMDYEAYAAVGVTVGHGGIVVHDDTADLSRLARYAMEFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ G ++++LL ++ + ++CALG P+ + ++ Sbjct: 456 EVLDRIAAGNNNAKQVELLRDLCDTMLHGSLCALGSMTPNPVLSALNHYPQDF 508 >gi|116254125|ref|YP_769963.1| NAD-dependent formate dehydrogenase beta subunit [Rhizobium leguminosarum bv. viciae 3841] gi|115258773|emb|CAK09879.1| putative NAD-dependent formate dehydrogenase beta subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 518 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 216/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F SL D + G + + + I+ E+ SGLRGRGGAG Sbjct: 98 FLKEQTRLTFARCGVTDPLSLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 158 FPTGIKWKTVLDAAGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ + AV +G+LG + G DI V GAGAY+CGEETAL Sbjct: 217 KGFVYTRSEYPHAIAVMTEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ +++++ GG G + AV GG P + Sbjct: 337 TIPLQIAGNVRYGGLFETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++ GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGGFTPYPVMSAMNHFPEDF 508 >gi|254468969|ref|ZP_05082375.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13] gi|207087779|gb|EDZ65062.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13] Length = 517 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q+R+ G+ SL D + + + K + I+NEVK SGLRGRGGA F Sbjct: 99 LKNQERLTFARVGITDPLSLKDYIDHEGFVGLKKAINMEAQQIVNEVKDSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S Y+V NADE + GT DR M ++P LIEG +IA A+ A Sbjct: 159 PTGIKWQTVLDTES-TQKYIVCNADEGDSGTYSDRMTMENDPFMLIEGMIIAGLAVNADH 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++ L A+ + LG N + + V AGAYICGEET+LL Sbjct: 218 GYIYLRSEYPHAQDVLNKAIKIATENNYLGQNILNSNKNFTLEVTRAAGAYICGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A +P I+ +GA +Y+ FG ++GT Sbjct: 278 ESLEGKRGLVRYKPPLPAIEGLFGKPTVVNNVVSLATIPIIMSKGAKYYADFGVGRSKGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ +E++ IT EL+ GG G + AV GG + Sbjct: 338 LPIQLAGNLKQTGLIEKAFGITLRELLYDFGGGSATG-KKIKAVQVGGPLGAFIAEEN-F 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++ + +G ++ D ++ + F ESCG+CTPCR G+ M Sbjct: 396 DIELDYEAYSKLNAVVGHGGIVAFDEDVNMAEMARYSFEFCAIESCGKCTPCRIGSTRGM 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++++V Q + + LL + + ++CA+G +P+ +K F Sbjct: 456 EVIDKIVARDEQPKNVALLENLCDTMVNGSLCAMGGMTPFPVMSALKYFPNDF 508 >gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum] Length = 627 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 160/424 (37%), Positives = 237/424 (55%), Gaps = 7/424 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60 L ++ +FT L + + L + ++ +L+ G + +++ SG+ GRGG F Sbjct: 175 LANEPVVFTGLRSGETRYLERYREDHGYRALEGLLKTGDAEAAFEQIRLSGVAGRGGGAF 234 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 K + K P YLV NADE EPGT KDR IM +PH+LIEG IA+ IGA Sbjct: 235 PMYRKLDAVRKNPP--PRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 292 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ L+ A+ E ++GLLG + + ++ GAGAYICGEET+L+ Sbjct: 293 GFIYLRSEYPHSFHILEKAIAEARSAGLLGPRILGSDFSFRLRLYRGAGAYICGEETSLI 352 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+ PR KPP + VGL+G PT NVE++A +P ILR G WY+ G + GT Sbjct: 353 NSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPAILRNGGDWYARLGDTKSPGT 412 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGH+ P E + ++ LIE GGI GG +L ++P GS+ L + Sbjct: 413 KLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL- 470 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY + E+G+ LG+A+VIVMD S ++ + ++ F HESCGQCTPCR+GT + Sbjct: 471 DLSLDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDVY 530 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ ++V+G + +DLL + + +IC LG +A ++ F + I+ Sbjct: 531 EILLKIVQGEGKPAYLDLLKSIGTYMREASICGLGQSAPNIPLSSMEYFEDEWKAHIEN- 589 Query: 420 HRCN 423 H C Sbjct: 590 HVCP 593 >gi|7684616|gb|AAF08194.2|AF146339_1 NADH:ubiquinone oxidoreductase 51 kDa subunit [Yarrowia lipolytica] Length = 379 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 224/347 (64%), Positives = 279/347 (80%), Gaps = 1/347 (0%) Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A A+IY+RGEF E Sbjct: 1 EGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAA 60 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 LQ A++E YA+GL+G ++ GYD D+ +H G GAY+CGEET+L+ESLEGK G+PRLKP Sbjct: 61 VLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETSLIESLEGKAGKPRLKP 120 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFPA VGL+G P+TV NVE++AV PTILRRG W++ FGRE N GTKLF ISG+VN PCT Sbjct: 121 PFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNSGTKLFCISGNVNEPCT 180 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 VEE MSI EL+EKHCGGI+GGWDNLL VIPGG SVP LP +MD+D LK++ S Sbjct: 181 VEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNICEDVLMDFDALKDVQS 240 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLGTAAVIV+++ D+I+AI R + FYKHESCGQCTPCREGT W+++ M+R G A++R Sbjct: 241 GLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTWLLKAMDRFRTGQAKER 300 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 EID+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ ++H Sbjct: 301 EIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMKKFH 347 >gi|332715498|ref|YP_004442964.1| NAD-dependent formate dehydrogenase subunit beta [Agrobacterium sp. H13-3] gi|325062183|gb|ADY65873.1| NAD-dependent formate dehydrogenase beta subunit [Agrobacterium sp. H13-3] Length = 518 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 222/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F SL D + +++ + I+ +V SGLRGRGGAG Sbjct: 98 FLKNQTRLTFARCGVTDPLSLEDYRANKGMKGLERAVALTPAEIVKQVTDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA A+GA Sbjct: 158 FPTGIKWKTVADATAD-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ +++ A+D G++G++ G D+ V GAGAY+CGEET+L Sbjct: 217 KGYIYTRSEYPHAVRTMEKAIDIALREGVIGASVLGSGRAFDLEVRMGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA GL+G PT VNNV S++ +P I+ RGA++Y FG + G Sbjct: 277 LNSLEGKRGTVRAKPPLPALQGLFGKPTVVNNVISLSSIPVIMDRGAAFYRDFGIGRSHG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ + E + + +L+ + GG G + AV GG P + Sbjct: 337 TIPIQLAGNIRHGGLYETAFGLPLGQLVNEIGGGTITGRP-VKAVQVGGPLGAYFPVS-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + DY+ G +G A ++V D + D+++ F ESCG+CTPCR G+ Sbjct: 395 FDTLFDYEAFTTAGGLIGHAGIVVFDDTADMLRQARFALEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++++ GI +R LL ++ + ++ ++CALG +P+ +++F Sbjct: 455 VETVDKISLGIEAERNTALLEDLCETMKFGSLCALGGFTPYPVMSALRHFPQDF 508 >gi|46446198|ref|YP_007563.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Protochlamydia amoebophila UWE25] gi|46399839|emb|CAF23288.1| probable NADH-ubiquinone oxidoreductase chain F [Candidatus Protochlamydia amoebophila UWE25] Length = 432 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 183/418 (43%), Positives = 237/418 (56%), Gaps = 9/418 (2%) Query: 5 QDRIFTNLYGLQGK--SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61 + RI T Y + G + + K + D +I VK S LRGRGG GF Sbjct: 3 EMRILTA-YMDDPHQCKIETYERNGGYQALKKAISSISSDQLIEMVKQSWLRGRGGGGFQ 61 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+PK C YLV N DESEPGT KDR I+ ++PH LIEG ++A +AIGA A Sbjct: 62 TGLKWSFVPKDCQ-ISKYLVCNCDESEPGTFKDRYIIENDPHQLIEGIILACYAIGAKQA 120 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG-YDVDIIVHHGAGAYICGEETALLE 180 FIY RGEF + L+ A+ E G L + + V IIVH GAGAYI GEETA L Sbjct: 121 FIYCRGEFFEGNKKLRLAIQEAKKRGYLEAPLGEANFSVSIIVHPGAGAYIAGEETAQLN 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG + PRLKPPFPA GLY PT VNNVE++ V I+ RG WY G+ N GTK Sbjct: 181 SLEGYRATPRLKPPFPAVSGLYEKPTVVNNVETLCNVVHIVNRGVEWYQSIGKPKNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +F +SGHV P E + I E++E+ G A PGGSS L + Sbjct: 241 IFQVSGHVQNPGCFEFPLGIPLKEVLERA--GWMLPGHQFKACYPGGSSCSLLTERDL-D 297 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D + S LGTA++IVMD STD++K RL FY++ESCG+CTPCREGT W + Sbjct: 298 TPMDFDSVAAKKSMLGTASIIVMDDSTDMVKVANRLMEFYQNESCGKCTPCREGTRWTKQ 357 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ R++ G ++ + + + +E + C L AA PI I+ FR E I + Sbjct: 358 ILTRILAGRGTVGDLKTIERICQQMEMDSFCPLAPGAALPIVSAIREFRGEFESYIMR 415 >gi|209551211|ref|YP_002283128.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536967|gb|ACI56902.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 518 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 151/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ G+ SL+D S G + + + ++ EV SGLRGRGGAG Sbjct: 98 FLKEQARLTFARCGITDPLSLADYESHGGLAGLRRAVSMTSAEVVKEVTDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + D Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLDAVGD-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y R E+ ++ AAV +G+LG S G DI V GAGAY+CGEETAL Sbjct: 217 KGYVYTRSEYPHAIAAMTAAVGIARQAGILGLSVLGSGRAFDIEVRTGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ +++++ GG G + AV GG P + Sbjct: 337 TIPLQIAGNVRYAGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++ GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|91975104|ref|YP_567763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] gi|91681560|gb|ABE37862.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] Length = 518 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 218/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + +S+ D + G + ++ L D II++V SGLRGRGGAGF Sbjct: 98 LKRQTRLTFVRCGIVDPRSIDDYRAHGGYRGLEHALRMSSDAIIDDVVKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG KW + + Y+ NADE + GT DR +M +P +IEG IA A+GA Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179 +IY+R E+ E++ AA++ +G LG + D DI V GAGAYICGEET++L Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA+ GL+G P+ +NNV + + VP IL GA Y+ G +RGT Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPSVINNVLTFSAVPYILDGGAQAYADCGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K + G+V + E + IT ELI++ GG + AV GG P + Sbjct: 337 KPIQLGGNVKHGGLFEVAFGITLGELIDEIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F ESCG+CTPCR G+ Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGA 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++++ G +I +L ++ ++ ++CALG A P+ + +F Sbjct: 455 EMVDKIIAGDKPAADIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507 >gi|330720274|gb|EGG98633.1| NAD-dependent formate dehydrogenase beta subunit [gamma proteobacterium IMCC2047] Length = 526 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 150/418 (35%), Positives = 221/418 (52%), Gaps = 7/418 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F S+ G + ++K L + I++ VK SGLRGRGGA F Sbjct: 108 LKKQQRLTFARAGVTDPVSIEAYQQHGGFVGLEKALAQSGQAIVDAVKESGLRGRGGAAF 167 Query: 61 STGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 G+KW + Y+V NADE + GT DR +M +P LIEG IA A+G Sbjct: 168 PAGIKWQTVHDCGLEEESPQKYIVCNADEGDSGTFADRMVMEGDPLMLIEGMTIAGLAVG 227 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A +IY+R E+ ++ L A+ Y SG LG+N G + + V GA AYICGEET Sbjct: 228 AEQGYIYLRSEYPVAQQILNEAMANAYESGFLGNNIQDSGRNFHLEVRMGAAAYICGEET 287 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 +LLESLEGK+G R KPP PA GL+G PT VNNV ++A VP IL GA Y+ +G + Sbjct: 288 SLLESLEGKRGMVRFKPPLPAIEGLFGKPTVVNNVLTLAAVPFILAEGAKAYADYGMGRS 347 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 RGT F ++G++ +E + T EL+++ GG G + A+ GG LP Sbjct: 348 RGTLPFQLAGNIQQGGLIELAFGTTLRELLDEFGGGTASG-KPMRAIQVGGPLGAYLPES 406 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Q G +DY+ + + LG ++V D S D+ + F ESCG+CTPCR G+ Sbjct: 407 Q-WGTELDYEAFAAIDAVLGHGGIVVFDDSVDMAEQARFSMEFCVAESCGKCTPCRVGST 465 Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + V++++ +G + LL ++ + + ++CA+G +P+ + +F E Sbjct: 466 RGVEVIDKIRQGENRVENHILLKDLCETMLHGSLCAMGGMTPFPVMSAVNHFSEDFER 523 >gi|218461918|ref|ZP_03502009.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli Kim 5] Length = 366 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 177/370 (47%), Positives = 235/370 (63%), Gaps = 5/370 (1%) Query: 57 GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 GAGF TGMKW F+PK +P YL NADE EPGT KDR IM +PH LIEG ++++AI Sbjct: 1 GAGFPTGMKWGFVPKRT-GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAI 59 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175 GA A++Y+RGE++ L+ A+ E +A G LG ++ + +H GAGAYICGEE Sbjct: 60 GAETAYVYIRGEYVTAIRRLEQAIAEAHAKGYLGKRILGSDFNFAVHIHCGAGAYICGEE 119 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TA+LESLEGK+ QPRLKPPFPA GLY PT +NNVE++A VP I+ RGA W+ G G + Sbjct: 120 TAMLESLEGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDK 179 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + G KL+ +SG V+ P E M I EL+E H GG+ + AVIPGG S P +P Sbjct: 180 SPGPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPE 238 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG Sbjct: 239 HGLE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGL 297 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 W ++V+ R+ G +++ L + K I G T CALGD AA ++ + +FR Sbjct: 298 NWTVKVLRRIETGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVAH 357 Query: 416 IDQYHRCNFQ 425 I++ HRC F Sbjct: 358 IEE-HRCPFH 366 >gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 634 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 159/424 (37%), Positives = 236/424 (55%), Gaps = 7/424 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60 L ++ +FT L + + L + ++ +L+ G + +++ SG+ GRGG F Sbjct: 182 LANEPVVFTGLRAEKTRYLERYREDHGYRALESLLKTGDAEAAFEQIRLSGVAGRGGGAF 241 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 K + K P YLV NADE EPGT KDR IM +PH+LIEG IA+ IGA Sbjct: 242 PMYRKLDAVRKNPP--PRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 299 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 FIY+R E+ L+ A+ E +GLLG + + ++ GAGAYICGEET+L+ Sbjct: 300 GFIYLRSEYPHSFHILEKAIAEARNAGLLGPRILGSDFSFRLRLYRGAGAYICGEETSLI 359 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+ PR KPP + VGL+G PT NVE++A +P+ILR G WY+ G + GT Sbjct: 360 NSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPSILRNGGDWYARLGDVKSPGT 419 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SGH+ P E + ++ LIE GGI GG +L ++P GS+ L + Sbjct: 420 KLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL- 477 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY + E+G+ LG+A+VIVMD S ++ + ++ F HESCGQCTPCR+GT + Sbjct: 478 DLSLDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDVY 537 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ ++++G + +DLL + + +IC LG +A ++ F + I Sbjct: 538 EILLKIIQGEGKPAYLDLLKSIGTYMREASICGLGQSAPNIPLSSMEYFEDEWKAHIVD- 596 Query: 420 HRCN 423 H C Sbjct: 597 HVCP 600 >gi|148653492|ref|YP_001280585.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp. PRwf-1] gi|148572576|gb|ABQ94635.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter sp. PRwf-1] Length = 537 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 160/404 (39%), Positives = 236/404 (58%), Gaps = 9/404 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L+ S ++ + LEK + + +KA+ +RGRGGAGF+ G+KW+FM P Sbjct: 69 DLATYQSLRGFEGLKTALEKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFMT-PPDGGPR 127 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M P LIEG +I + AIGA +I++RGE+I E L A Sbjct: 128 YLICNADEMEPGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYILAAERLMA 187 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DEC A+ L+G N + ++ VH GAG YICGEETAL+ LEG++ PR KPPFP Sbjct: 188 AIDECLANNLMGDNILGSEFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQ 247 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253 G +G PT VNNVE+++ +P I+ G WY G GTK+F SG VN P Sbjct: 248 VSGAWGRPTVVNNVETLSNMPAIMINGVEWYQSLPNEKGNSTTPGTKIFGCSGLVNDPGL 307 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E+IE GG++ L A +PGG+S L + MD+D +++ GS Sbjct: 308 WELPFGYTAREIIEDFAGGMK-DGKRLKAWLPGGASTDFLTTEHL-DVAMDFDSIQKAGS 365 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +GT ++V+D S D++ + L +F++ ESCG CTPCR+G W ++++ + G Q+ Sbjct: 366 RMGTGLIMVVDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGQQG 425 Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ L +++++ G+T CA A P+ +K FR + +I Sbjct: 426 DVEKLEGLTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469 >gi|288817441|ref|YP_003431788.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6] gi|288786840|dbj|BAI68587.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6] gi|308751048|gb|ADO44531.1| NADH dehydrogenase (quinone) [Hydrogenobacter thermophilus TK-6] Length = 423 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 160/395 (40%), Positives = 229/395 (57%), Gaps = 11/395 (2%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + + + G + ++K + + I++ V S LRGRGGAGF TG KW F + + P Y Sbjct: 31 IEEYLKDGGYQALEKAINMSPEEIVDWVDKSQLRGRGGAGFPTGKKWKFAIQNPA--PRY 88 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L+ NADESEPGT KDR ++ +PH LIEG +I+++A+GA+ AFIY+RGE+ L+ A Sbjct: 89 LICNADESEPGTFKDRVLLERDPHLLIEGMIISAYALGANQAFIYIRGEYPAAYYILKDA 148 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++E G LG + G+D++I V GAGAYICGEE+AL+ESLEGK+G PR KPPFP Sbjct: 149 IEEAKKKGFLGKDILGSGFDLEIYVAKGAGAYICGEESALIESLEGKRGFPRTKPPFPVQ 208 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 GL+G PT VNNVE++ +P I++ G Y G + G KLF +SG V P E M Sbjct: 209 YGLFGRPTVVNNVETLCNIPFIIKLGWEDYRYIGPSDYPGPKLFPVSGKVKKPGVYELPM 268 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 + T E++ K+ GG ++ C A ++ MDY L GT Sbjct: 269 NTTLREVVYKYAGGTINNKKVKAVFS---GALDCFSADEL-DTPMDYSPL----GFGGTG 320 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 VIV+ I++ +++ FY HESCGQCTPCR GT ++E+++KG A +R+ + Sbjct: 321 TVIVLTEEDSIVEMCLKVAEFYAHESCGQCTPCRVGTYEQANLLEKIMKGTATERDWEGF 380 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 V+ I+ +IC LG A I+ +K F E Sbjct: 381 DFVNSYIQPTSICGLGAVAGRLIRQTMKKFPEEWE 415 >gi|296140856|ref|YP_003648099.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola DSM 20162] gi|296028990|gb|ADG79760.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola DSM 20162] Length = 446 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 205/419 (48%), Positives = 267/419 (63%), Gaps = 13/419 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP----- 70 + +L+ + G + +D+ L D +I VK +GLRGRGGAGF TG+KWSF+P Sbjct: 17 EPWTLASYRASGGYTGIDRALAMTPDQVIELVKEAGLRGRGGAGFPTGLKWSFIPQLRAG 76 Query: 71 ---KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 K +D+PHYLVVNADESEPGTCKD +M PHTLIEG +IAS+AI A AFIYVRG Sbjct: 77 EEPKPGADKPHYLVVNADESEPGTCKDMPLMFATPHTLIEGVIIASYAIRARQAFIYVRG 136 Query: 128 EFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E + + L+AAV E YA+G LG G+ VD++VH GAGAYICGEETALL+SLEG++ Sbjct: 137 EVLGVQRRLRAAVAEAYAAGYLGKPLGENGFTVDLVVHGGAGAYICGEETALLDSLEGRR 196 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPRL+PPFPA GLY PT VNNVESIA VP IL GA W+ G E + G L+S+SG Sbjct: 197 GQPRLRPPFPAVAGLYASPTCVNNVESIASVPAILANGADWFRTMGSEKSPGFTLYSVSG 256 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E ++ IT E++E G L PGGSS P L A + +DY+ Sbjct: 257 HVVRPGQYEAALGITLREMLELAGG--VRPGHELKFWTPGGSSTPLLTAEHL-DVPLDYE 313 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G+ GS LGT A+ + D + +++A+ R FY HESCG+CTPCREGT W++R++ RL Sbjct: 314 GVAGAGSMLGTKALQIFDDTVCVVRAVLRWLEFYAHESCGKCTPCREGTYWLVRLLRRLE 373 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +G + ++ L +V+ + G+ CALGD AA PIQ + FR E + + C F Sbjct: 374 QGEGEPEDLTTLADVADGVLGKAFCALGDGAASPIQSSLTYFREEYERHVHERG-CPFD 431 >gi|320354158|ref|YP_004195497.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032] gi|320122660|gb|ADW18206.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032] Length = 423 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 191/415 (46%), Positives = 267/415 (64%), Gaps = 4/415 (0%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q ++ + + + + + G + +DK+ + +I VKASGLRGRGGAGF TG Sbjct: 2 QVKVLSARFDIPDAHKIEVAKEHGAYATLDKVFAMQPEEVIELVKASGLRGRGGAGFPTG 61 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSF+PK D+P YL VN+DESEP T KDR I+ +PH LIEG +I +AI +H A+I Sbjct: 62 LKWSFLPKNI-DKPVYLAVNSDESEPATFKDRYILVRDPHMLIEGIIICCYAIKSHAAYI 120 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+RGE+ + ++LQAA+DE YA+G LG Y +D+ VH GAGAY+CGEETALLES+ Sbjct: 121 YIRGEYTTQVKALQAAIDEAYAAGYLGDTIAGKDYKLDVTVHRGAGAYVCGEETALLESI 180 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EG+KGQPR KPPFPA GLYGCPT +NNV+SIA +P IL G+ Y +G E + GT LF Sbjct: 181 EGRKGQPRSKPPFPAVEGLYGCPTIINNVQSIASLPFILANGSDAYKAYGTEKSPGTHLF 240 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ISG V P E + + E+I+K GG+R G L VIPGGSS P L + + Sbjct: 241 GISGLVKKPGMYELPLGLPLLEVIDKVAGGVRDGRK-LKGVIPGGSSTPVLTPEEAQTVT 299 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +DY+ + + G+ ++V+D + D++K + L FY HESCGQCTPCREG GWM++++ Sbjct: 300 LDYESMAAHKTMFGSGGIVVLDDTVDMVKLVENLIYFYHHESCGQCTPCREGLGWMLKIV 359 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +++++G +IDLL E+ NIE +T+C L A + + FR E ++ Sbjct: 360 KKIIRGEGTIADIDLLTELCDNIEMKTVCVLSAACTMSTRSYLNKFRHEFEAYVN 414 >gi|134295064|ref|YP_001118799.1| NADH dehydrogenase (quinone) [Burkholderia vietnamiensis G4] gi|134138221|gb|ABO53964.1| formate dehydrogenase beta subunit [Burkholderia vietnamiensis G4] Length = 525 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 220/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D ++ + L D + + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLAHDGLAGLKNALAMDGDAACDTLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQAAA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ ++L+ A++ +G LG++ + D+ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIKTLETALERAREAGWLGAHVLGSAHAFDLHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GLYG PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLYGKPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ + GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R+I LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRNGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|219681533|ref|YP_002467918.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471214|ref|ZP_05635213.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624376|gb|ACL30531.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 444 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 + + + + ++ K L E + +IN VK SGL+GRGGAGFSTG+KWS M + S Sbjct: 26 IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85 Query: 78 -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ NADE EPGT KDR ++ PH LIEG +++++A+ A+I++RGE+++ L Sbjct: 86 RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + ++ E G +G N +++++++H GAG YICGEETAL+ SLEG++ PR KPPF Sbjct: 146 KQSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRSKPPF 205 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT VNNVE+++ VP I+ G SWY + ++ GTKL SG+V P E Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + G++ G+ +L A PGG+ L + MD+ + + GS L Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D T ++ ++ + F+ ESCG CTPCR+G W++++++ L + K ++ Sbjct: 324 GTALSMAVDDKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 L ++ ++ G+T CA A P+Q IK FR E I+ R Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRKR 430 >gi|296159983|ref|ZP_06842803.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1] gi|295889729|gb|EFG69527.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1] Length = 521 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 150/414 (36%), Positives = 223/414 (53%), Gaps = 6/414 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETAL 178 IYVR E+ +L+AA+ + A+G LG + + ++ V GAGAY+CGEETAL Sbjct: 217 GHIYVRSEYPHSIATLEAAITKARAAGWLGDSVLGSTAHRFELFVAKGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA VGL+G PT +NNV ++A VP I RGA++Y FG +RG Sbjct: 277 LESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G+V VE + +T EL+ + GG G AV GG LP Q Sbjct: 337 TLPFQLAGNVKQGGLVELAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ- 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ Sbjct: 395 WDIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VEVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 508 >gi|15616778|ref|NP_239990.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133964|sp|P57256|NUOF_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|25285047|pir||D84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain F [imported] - Buchnera sp. (strain APS) gi|10038841|dbj|BAB12876.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 444 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 + + + + ++ K L E + +IN VK SGL+GRGGAGFSTG+KWS M + S Sbjct: 26 IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85 Query: 78 -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ NADE EPGT KDR ++ PH LIEG +++++A+ A+I++RGE+++ L Sbjct: 86 RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + ++ E G +G N +++++++H GAG YICGEETAL+ SLEG++ PR KPPF Sbjct: 146 KQSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRSKPPF 205 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT VNNVE+++ VP I+ G SWY + ++ GTKL SG+V P E Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + G++ G+ +L A PGG+ L + MD+ + + GS L Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D T ++ ++ + F+ ESCG CTPCR+G W++++++ L + K ++ Sbjct: 324 GTALSMAVDNKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 L ++ ++ G+T CA A P+Q IK FR E I+ R Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRKR 430 >gi|227542298|ref|ZP_03972347.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51866] gi|227181898|gb|EEI62870.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51866] Length = 454 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 186/409 (45%), Positives = 248/409 (60%), Gaps = 6/409 (1%) Query: 8 IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I + +G + RG + + L +++ + SGLRGRGGAGF G KW Sbjct: 25 ILSANWGDPTPWKIESYEQRGGYQALRTALAMEPKELVDLILDSGLRGRGGAGFPVGRKW 84 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P V + +P YLVVN DESEPGTCKD ++ PHTL+EG +I+ A + AFIY+R Sbjct: 85 SFVP-VDNPKPKYLVVNGDESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLR 143 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + LQAA+ E Y G G N G V I VH GAGAYICGEETALL+SLEGK Sbjct: 144 GEVVHIARRLQAAIQEAYRKGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGK 203 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PRL+PPFPA GLY PT +NNVESI+ VP I+R GA WY+ G E ++G ++S+S Sbjct: 204 RGHPRLRPPFPAVEGLYASPTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLS 263 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV +P E + IT ELI+ G L PGGSS L A + +DY Sbjct: 264 GHVTHPGQYEAPLGITLRELIDMAGG--IREGHTLKYFTPGGSSTQMLTAEHL-DVPLDY 320 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L+E GS LGT A+ + D +T +++ R FYKHESCG+CTPCREGT W++++++RL Sbjct: 321 EALREAGSMLGTKALQIFDDTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRL 380 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +G + ++D L + +I GR+ CAL D A + + NFR E Sbjct: 381 ERGEGKPGDVDKLISICDHIGGRSFCALADGAVACVTSAVANFREEFEA 429 >gi|150398096|ref|YP_001328563.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419] gi|150029611|gb|ABR61728.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419] Length = 518 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 151/414 (36%), Positives = 218/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SL D + G +++ + I+ EV SGLRGRGGAG Sbjct: 98 FLKRQTRLTFARCGVIDPLSLDDYRAHGGLRGLERAVVMQPAAIVAEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLETP-GARKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + AAV+ A+G+LG S + D+ V GAGAY+CGEET+L Sbjct: 217 KGYIYTRSEYPHAIAVMSAAVEIARAAGVLGTSVLGSAHAFDMEVRTGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ PT +NNV S+A VP IL +GA +Y FG +RG Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T E++++ GG G + AV GG P + Sbjct: 337 TIPLQIAGNVRHGGLFETAFGLTLGEIVDEIGGGTASGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSIRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V + + GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VEVADAIAAGIEPEKNRVLLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|227488703|ref|ZP_03919019.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51867] gi|227091364|gb|EEI26676.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC 51867] Length = 454 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 186/409 (45%), Positives = 248/409 (60%), Gaps = 6/409 (1%) Query: 8 IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I + +G + RG + + L +++ + SGLRGRGGAGF G KW Sbjct: 25 ILSANWGDPTPWKIESYEQRGGYQALRTALTMEPKELVDLILDSGLRGRGGAGFPVGRKW 84 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P V + +P YLVVN DESEPGTCKD ++ PHTL+EG +I+ A + AFIY+R Sbjct: 85 SFVP-VDNPKPKYLVVNGDESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLR 143 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE + LQAA+ E Y G G N G V I VH GAGAYICGEETALL+SLEGK Sbjct: 144 GEVVHIARRLQAAIQEAYRKGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGK 203 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PRL+PPFPA GLY PT +NNVESI+ VP I+R GA WY+ G E ++G ++S+S Sbjct: 204 RGHPRLRPPFPAVEGLYASPTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLS 263 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 GHV +P E + IT ELI+ G L PGGSS L A + +DY Sbjct: 264 GHVTHPGQYEAPLGITLRELIDMAGG--IREGHTLKYFTPGGSSTQMLTAEHL-DVPLDY 320 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 + L+E GS LGT A+ + D +T +++ R FYKHESCG+CTPCREGT W++++++RL Sbjct: 321 EALREAGSMLGTKALQIFDDTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRL 380 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +G + ++D L + +I GR+ CAL D A + + NFR E Sbjct: 381 ERGEGKPGDVDKLISICDHIGGRSFCALADGAVACVTSAVANFREEFEA 429 >gi|307316385|ref|ZP_07595829.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83] gi|306898225|gb|EFN28967.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83] Length = 518 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 217/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SL D + +++ + I+ EV SGLRGRGGAG Sbjct: 98 FLKRQTRLTFARCGVIDPLSLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG IA A A Sbjct: 158 FPTGIKWKTVLEA-RGPRKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATSAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + AA++ A+G+LG++ + D+ V GAGAY+CGEET+L Sbjct: 217 KGYIYTRSEYPHAIAVMSAAIEIARAAGVLGASVLGSAHAFDMEVRTGAGAYVCGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ PT +NNV S+A VP IL +GA +Y FG +RG Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + +T E++++ GG + AV GG P + Sbjct: 337 TIPLQIAGNVKHGGLFETAFGLTLGEIVDEIGGGTASARP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A +V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYEAFAARDGLIGHAGTVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V +R+ GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|221632800|ref|YP_002522022.1| NAD-dependent formate dehydrogenase subunit beta [Thermomicrobium roseum DSM 5159] gi|221156040|gb|ACM05167.1| NAD-dependent formate dehydrogenase beta subunit [Thermomicrobium roseum DSM 5159] Length = 574 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 146/412 (35%), Positives = 230/412 (55%), Gaps = 6/412 (1%) Query: 13 YGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 + +S+ D ++ G + K L E + +I EVKAS LRGRGGAGF TG+KW + Sbjct: 150 GIIDPESIEDFIAIGGYRAFLKALFEMTPEEVIAEVKASNLRGRGGAGFPTGIKWESGRR 209 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 + RP Y+VVN+ E EP KDR ++ PH ++EG +I +A+ C + Y+ GE Sbjct: 210 TPA-RPKYVVVNSHEGEPNVFKDRRLLESNPHLVLEGLLIGCYALETPCGYNYIGGEHAL 268 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 + Q AV++ Y GLLG + G+ + + G GAYICGE +AL+ ++ G++GQPR Sbjct: 269 ALQRFQRAVEQAYELGLLGDDILGSGFSCHVRIRTGGGAYICGEGSALMYAIMGQRGQPR 328 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 KPP GL+ PT +NN E+ A +P I++ G SWY+ G + + GTKL ++ G V Y Sbjct: 329 TKPPRSVEEGLWRRPTVLNNTETFASIPAIIQNGGSWYASLGTKESTGTKLVTMQGPVKY 388 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 E ++ ELI GG+R G+ L + GG S L ++ +D++ L Sbjct: 389 LGVAEIEFGLSMRELIFDVFGGLREGY-RLKGIQTGGVSAGPLREDEL-DVPIDFEALTP 446 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 +G+ +G+ + D S + L F ++ESCG+CTPCR GT ++ +++R+ G Sbjct: 447 LGAMVGSGGFVAFDESVCAVDFARYLVAFSRYESCGKCTPCRLGTPALVEILDRIRHGFG 506 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + ++D++ SK+I ++C LG A P+ G+++ FR E I + RC Sbjct: 507 RPEDLDIIQYASKHIIELSLCGLGQVAPMPLLGMLERFRDEFIEHITE-RRC 557 >gi|93005407|ref|YP_579844.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter cryohalolentis K5] gi|92393085|gb|ABE74360.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter cryohalolentis K5] Length = 474 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 161/406 (39%), Positives = 235/406 (57%), Gaps = 9/406 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L+ S ++ + L + D +N +K + ++GRGGAGF G+KWS M P Sbjct: 54 DLATYESLRGFEALKIALNQSPDDTLNTIKEAVVKGRGGAGFPAGIKWSLMA-PPDGGPR 112 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADE EPGT KDR +M P LIEG +I+++AIGA +I++RGE+I E L A Sbjct: 113 YLVCNADEMEPGTFKDRLLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTA 172 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+ L+G N + D+ VH GAG YICGEETAL+ LEG++ PR KPPFP Sbjct: 173 AIEELKANNLVGDNILGSDFSFDLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQ 232 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253 G +G PT VNNVE++ V I+ G+ WY G GTKLF SG VN P Sbjct: 233 VAGAWGRPTVVNNVETLHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGL 292 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E+IE GG+ L A +PGG+S L A + ++D+D +++ GS Sbjct: 293 WELPFGYTAREIIEDFAGGM-QEGRTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGS 350 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +GT ++V+D D++ + L +F++ ESCG CTPCR+G W ++++ + G Q Sbjct: 351 RMGTGLLMVVDEEQDMVPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQIG 410 Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++ L +++++ G+T CA A P+ IK FRP +++I Q Sbjct: 411 DVEKLEGLTRDLWIGKTFCAHAPGAMEPLMSAIKYFRPEFDQKIAQ 456 >gi|289548717|ref|YP_003473705.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484] gi|289182334|gb|ADC89578.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484] Length = 425 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 166/399 (41%), Positives = 234/399 (58%), Gaps = 11/399 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + + G + ++K L + I++ V S LRGRGGAGF TG KW + + P Sbjct: 29 HSIEEYLKDGGYQALEKALSMKPEEIVDWVDKSQLRGRGGAGFPTGRKWKLAVQNPA--P 86 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADESEPGT KDR ++ +PH LIEG VI+++AIGA+ AFIY+RGE+ L+ Sbjct: 87 RYLICNADESEPGTFKDRILIERDPHLLIEGIVISAYAIGANEAFIYIRGEYPAGYRILR 146 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E G +G N G+D++I V GAGAYICGEE+AL+ESLEGK+G PR+KPP+P Sbjct: 147 DAIEEARKKGFVGKNILGSGFDLEIYVARGAGAYICGEESALIESLEGKRGWPRIKPPYP 206 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT VNNVE++ +P I+ G Y G + G KLF +SG V P E Sbjct: 207 VQYGLFGRPTVVNNVETLCNIPIIVGMGWEEYRYIGPSDYPGPKLFPVSGKVKKPGVYEL 266 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M+ T E+I K+ GG G + ++ C A ++ MDY G Sbjct: 267 PMNTTLREVIFKYAGGTIGNKKVKAVLS---GALDCFSADEL-DTPMDYSPF----GFGG 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T VIV+ DI++A +++ FY HESCGQCTPCR GT ++ER+VKG+A +++ D Sbjct: 319 TGTVIVLTEEDDIVEACLKVAEFYAHESCGQCTPCRVGTHEQEYLLERIVKGVADEKDWD 378 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 V++ I+ +IC LG A I+ ++ F E Sbjct: 379 AFVFVNRYIQPTSICGLGAVAGRLIKQAMEKFPEEWERY 417 >gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8] Length = 639 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 179/415 (43%), Positives = 251/415 (60%), Gaps = 8/415 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 ++ ++ +L G ++ ++ L +I+EVK SGLRGRGGAGF TG+KW Sbjct: 217 MYRHVGVEGSHTLDYYRGHGGYEAAERALTRLSPAEVIDEVKVSGLRGRGGAGFPTGVKW 276 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SFMP R +++ NADESEPG+ KDR I+ +PH LIEG +IA AI A IY+R Sbjct: 277 SFMP-PVDGRQRFILCNADESEPGSFKDRYILEDDPHQLIEGMIIAGHAISATLGVIYIR 335 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ L+AA+ E A+GLLG D ++I+H GAGAYICGEETAL+ S EG Sbjct: 336 GEYYLGYRRLRAAIAEARAAGLLGRGLFGTEIDFELILHRGAGAYICGEETALMNSFEGL 395 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 + PRLKPPFPA +G+YG PTT+NNV ++ V I+ +GA+W++ G E+++GTKL+ IS Sbjct: 396 RANPRLKPPFPAQLGIYGLPTTINNVTTLTSVVHIIGQGAAWFAAIGSEDSKGTKLYQIS 455 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMD 304 G V P E + TF ELI GG A IPGGSS P LP MD Sbjct: 456 GPVERPGVYELPLGATFRELIFDLAGGPTM---PAKAFIPGGSSAPMLPFEDAYLDTPMD 512 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVME 363 Y L E+GS LGT VIV+ ++ AI+ L FY HESCG+CTPCREG W+ ++ + Sbjct: 513 YGSLAELGSMLGTGGVIVIPEEKCMVSAIYNLVRFYAHESCGKCTPCREGVATWLPKLYQ 572 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +L+ G+ ++ L+ E++ +++G C L D+ A P++ +FR E +++ Sbjct: 573 KLLAGLGSAGDLTLIEELAHHLKGTAFCLLADSCALPVEASFAHFRSEYEHLVER 627 >gi|328543746|ref|YP_004303855.1| NADH dehydrogenase (Quinone) [polymorphum gilvum SL003B-26A1] gi|326413490|gb|ADZ70553.1| NADH dehydrogenase (Quinone) [Polymorphum gilvum SL003B-26A1] Length = 525 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 156/422 (36%), Positives = 218/422 (51%), Gaps = 5/422 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ G+ SL D + G + K + I+ V ASGLRGRGGAG Sbjct: 102 FLARQTRLTFARCGITDPLSLDDYRALGGLAGLQKAVAMPPAEIVETVTASGLRGRGGAG 161 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 162 FPTGIKWKTVLEAAGP-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 220 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ ++ AVD G+LG + D+ + GAGAY+CGEETAL Sbjct: 221 RGYVYLRSEYPDAIAVMREAVDRARRHGVLGPRVLGSPHAFDMEIRVGAGAYVCGEETAL 280 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ G G PT VNNV S+A VP IL RGA++Y FG +RG Sbjct: 281 LNSLEGKRGVVRAKPPLPAHHGFLGRPTVVNNVISLASVPIILDRGAAFYRDFGMGRSRG 340 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + +T E+++ GG G + AV GG P + Sbjct: 341 TIPIQIAGNVRYGGLFETAFGLTLGEIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-L 398 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A V+V D S D++ F ESCG+CTPCR G Sbjct: 399 FDTPFDYEEFARRDGLIGHAGVVVFDDSVDMLSQARFAFEFCAVESCGKCTPCRIGAVRG 458 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + V +R+ G + +I L+ ++ ++ ++CALG +P+ + +FR + R + Sbjct: 459 VEVADRIAAGQDPEAQIALIADLCTTMKHGSLCALGGFTPYPVMSALTHFRQDFQPRSPR 518 Query: 419 YH 420 H Sbjct: 519 SH 520 >gi|330815877|ref|YP_004359582.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3] gi|327368270|gb|AEA59626.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3] Length = 524 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 144/413 (34%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + + L E+ SGLRGRGGA F Sbjct: 102 LKKQQRLTFARIGITDPLSIDDYLAHGGLEGLRRALTLDGAAACEELIESGLRGRGGAAF 161 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 162 PAGIKWRTVRQAQA-TQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGVVTGATQ 220 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A++ A+G LG++ G ++ V GAGAY+CGEETALL Sbjct: 221 GHIYVRSEYPHAIAALNQAIERARAAGWLGADVLGSGRAFELFVAKGAGAYVCGEETALL 280 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA +Y +G +RGT Sbjct: 281 ESLEGKRGVVRAKPPLPALQGLHGQPTVINNVITLATAPIIFARGAQFYRDYGMGRSRGT 340 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL+ + GG G A GG LP Q Sbjct: 341 LPFQLAGNIRQGGLVELAFGVTLRELLFEFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F HESCG+CTPCR G+ + Sbjct: 399 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMQFCVHESCGKCTPCRIGSTRGV 458 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL E+ + ++CA+G +P+ + +F Sbjct: 459 ETIARIRAGDTSERQVHLLRELCDTMMAGSLCAMGGMTPYPVLSALDHFPEDF 511 >gi|332971174|gb|EGK10138.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp. 1501(2011)] Length = 537 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 160/404 (39%), Positives = 234/404 (57%), Gaps = 9/404 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L S ++ + L K + + +KA+ +RGRGGAGF+ G+KW+FM P Sbjct: 69 DLETYQSLRGFEGLKTALSKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFMT-PPDGGPR 127 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M P LIEG +I + AIGA +I++RGE+I E L A Sbjct: 128 YLICNADEMEPGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYIVAAERLMA 187 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DEC A+ L+G N + ++ VH GAG YICGEETAL+ LEG++ PR KPPFP Sbjct: 188 AIDECLANNLMGDNILGSDFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQ 247 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253 G +G PT VNNVE+++ +P IL G WY G GTK+F SG VN P Sbjct: 248 VSGAWGRPTVVNNVETLSNMPAILINGVEWYQSLPNEKGNTTTPGTKIFGCSGLVNDPGL 307 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E T E+IE GG++ G L A +PGG+S L + MD+D +++ GS Sbjct: 308 WELPFGYTAREIIEDFAGGMKQG-KRLKAWLPGGASTDFLTTEHL-DVPMDFDTIQKAGS 365 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +GT ++V+D S D++ + L +F++ ESCG CTPCR+G W ++++ + G + Sbjct: 366 RMGTGLIMVVDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGKVG 425 Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +++ L +++++ G+T CA A P+ +K FR + +I Sbjct: 426 DVEKLEGLTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469 >gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 610 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 166/425 (39%), Positives = 250/425 (58%), Gaps = 9/425 (2%) Query: 4 DQD--RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60 DQD +F NL + SL D ++G ++ + K + + INEVK +G+RGRGGAGF Sbjct: 188 DQDNMVLFANLDRIDPMSLDDYRAKGGYEGLKKAVTSMSQVDAINEVKTAGVRGRGGAGF 247 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KWSF + P Y+V NADE EPGT KDR IM +PH ++EG +A +A+GA Sbjct: 248 PAGLKWSFT-QPSPIIPKYIVCNADEGEPGTIKDRYIMEGDPHRVLEGMALAGYAVGASH 306 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVRGE+ LQ A+D+ +G LG N + I V G GAY+CGEETAL+ Sbjct: 307 GYIYVRGEYYLSMLRLQNAIDQAMQNGCLGKNIFGSDFSFTIEVQSGGGAYVCGEETALI 366 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR+KPPFP VG++G P+ VNNVE+++ +P I+ +G WY G E+ GT Sbjct: 367 ESIEGKRGNPRVKPPFPGQVGVWGKPSIVNNVETLSSIPMIISKGGEWYKAKGTEDATGT 426 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F + GHVN P +E + +T ELI+++ GGIRGG A GG+S + Q+ Sbjct: 427 KIFQVVGHVNQPGVIEADLGMTVRELIDRYGGGIRGG-KKFKACQTGGASFGFITEDQL- 484 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 M+Y + + LG+ ++VMD T I+ + + F++HESCG C PCR GT + Sbjct: 485 DTPMEYKAMGAIEGALGSGTMLVMDEDTCIVDVVKCILYFFQHESCGFCLPCRRGTRILY 544 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ ++ G ++ ++D + +V++ + CAL + + I+ I+ +R ++ Sbjct: 545 DLICKIADGRGEEADLDKMIKVAQVMADSANCALAMSPIFFIKTTIERYRDDYLAHLN-- 602 Query: 420 HRCNF 424 C Sbjct: 603 GTCPL 607 >gi|219682089|ref|YP_002468473.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621822|gb|ACL29978.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085900|gb|ADP65982.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086473|gb|ADP66554.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 444 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 + + + + ++ K L E + +IN VK SGL+GRGGAGFSTG+KWS M + S Sbjct: 26 IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85 Query: 78 -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ NADE EPGT KDR ++ PH LIEG +++++A+ A+I++RGE+++ L Sbjct: 86 RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + ++ E G +G N +++++++H GAG YICGEETAL+ SLEG++ PR KPPF Sbjct: 146 KQSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRAKPPF 205 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT VNNVE+++ VP I+ G SWY + ++ GTKL SG+V P E Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + G++ G+ +L A PGG+ L + MD+ + + GS L Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D T ++ ++ + F+ ESCG CTPCR+G W++++++ L + K ++ Sbjct: 324 GTALSMAVDDKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 L ++ ++ G+T CA A P+Q IK FR E I+ R Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRTR 430 >gi|311087054|gb|ADP67134.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 444 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77 + + + + ++ K L E + +IN VK SGL+GRGGAGFSTG+KWS M + S Sbjct: 26 IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85 Query: 78 -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ NADE EPGT KDR ++ PH LIEG +++++A+ A+I++RGE+++ L Sbjct: 86 RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + ++ E G +G N +++++++H GAG YICGEETAL+ SLEG++ PR KPPF Sbjct: 146 KKSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRSKPPF 205 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA GL+G PT VNNVE+++ VP I+ G SWY + ++ GTKL SG+V P E Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T E++E + G++ G+ +L A PGG+ L + MD+ + + GS L Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D T ++ ++ + F+ ESCG CTPCR+G W++++++ L + K ++ Sbjct: 324 GTALSMAVDDKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 L ++ ++ G+T CA A P+Q IK FR E I+ R Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRTR 430 >gi|295677293|ref|YP_003605817.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] gi|295437136|gb|ADG16306.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] Length = 524 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 220/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALRTDGDAACEALIQSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG VIA GA Sbjct: 158 PAGIKWRTVRGAKA-AQKYVVCNADEGDSGTFSDRLVMESDPYVLIEGMVIAGIVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + G ++ V GAG+Y+CGEETA+L Sbjct: 217 GYIYVRSEYPHSIATLEAAIARARTAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA VGLYG PT +NNV ++A VP I RGA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T +L++ GG G AV GG LP Q Sbjct: 337 LPFQLAGNIKRGGLVELAFGVTLRQLLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ + Sbjct: 395 DIPMDYEAYAAVGAVIGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 507 >gi|113866668|ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] gi|113525444|emb|CAJ91789.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 520 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 152/414 (36%), Positives = 222/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S Y+V NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 160 FPTGIKWKTVLGAQS-AVKYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L++A+ A+G LG + G + V GAGAY+CGEETAL Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT +NNV S+A VP IL RGA +Y +G +RG Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVPVILARGAQYYRDYGMGRSRG 338 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 396 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ G +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 397 FDVPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 510 >gi|209519328|ref|ZP_03268127.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] gi|209500212|gb|EEA00269.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] Length = 524 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 146/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + G ++ V GAG+Y+CGEETA+L Sbjct: 217 GYIYVRSEYPHSIATLEAAIARARKAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GLYG PT +NN ++A VP I RGA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPVPALAGLYGQPTVINNAITLATVPIIFARGAAFYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL++ GG G AV GG LP Q Sbjct: 337 LPFQLAGNIKRGGLVELAFGVTLRELLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ + Sbjct: 395 DIPMDYEAYAAVGAVIGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVAGSLCAMGGMTPYPVLSALDHFPEDF 507 >gi|331696855|ref|YP_004333094.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] gi|326951544|gb|AEA25241.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] Length = 499 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 146/413 (35%), Positives = 214/413 (51%), Gaps = 4/413 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 M Q F + + D G + + L ++ V SGLRGRGGAGF Sbjct: 89 MRAQQRLTFARVGVVDPADPDDHERHGGLEGLRAALAMDPADVVTAVTDSGLRGRGGAGF 148 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + S ++ NADE + GT DR ++ +P TL+ G IA +A+GA Sbjct: 149 PTGVKWKTVAQASS-AVKFVCCNADEGDSGTFADRMLLEGDPFTLLCGMTIAGYAVGASE 207 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ +++ A+ G LG + G+ D+ V GAGAYICGEET++L Sbjct: 208 GYVYVRSEYPDAVAAVRTAIVAARERGWLGDSVLGSGFAFDVHVRVGAGAYICGEETSML 267 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VPTIL G Y+ G +RGT Sbjct: 268 ESLEGKRGTVRPKPPIPALEGLFGRPTVVNNVLSLASVPTILADGPQAYAALGVGRSRGT 327 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++F + G+V VE + I+ EL+E GG + AV GG LP Q Sbjct: 328 QVFQLGGNVARGGVVETAFGISLGELVETFGGGT-LSGRPVRAVQVGGPLGAYLPVEQ-F 385 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ G+ +G V+V D + D+ F ESCG+CTPCR G + Sbjct: 386 DLPMDYEAFAASGAMVGHGGVVVFDDTVDMSAMARFAMEFCAEESCGRCTPCRIGAVRGV 445 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ G ++ + LL ++ + + ++CA+G P++ I++F Sbjct: 446 ETIDRIRAGEDREANLVLLEDLCELMTDGSLCAMGGLTPLPVRSAIRHFGEDF 498 >gi|78221382|ref|YP_383129.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78192637|gb|ABB30404.1| NADH dehydrogenase subunit F [Geobacter metallireducens GS-15] Length = 422 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 171/409 (41%), Positives = 241/409 (58%), Gaps = 8/409 (1%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + ++ + G + ++K L + + V SGLRGRGGAGF TG KWSF+P+ P Sbjct: 16 TFAEYRAEGGFAALEKALAGMSPNDVQQVVIDSGLRGRGGAGFPTGKKWSFVPRDIPG-P 74 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ N DE EPGT KDR ++ P++L+EG +A++AIG AFI++R + E+ + Sbjct: 75 RYLICNCDEMEPGTYKDRVLLEANPYSLVEGMTLAAYAIGVAHAFIFIRRGYEEAAENCR 134 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E A+GLLG N G+ +++ VH AG YICGEETAL+ +LEGK+ PR KPPFP Sbjct: 135 RAIAEAKAAGLLGENILGTGFSLELDVHQSAGRYICGEETALMNALEGKRANPRSKPPFP 194 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255 A GL+G PT VNNVE++A +P I+ GA+W+ G R G KLF +SGHVN E Sbjct: 195 AVKGLWGRPTVVNNVETLANIPAIVANGAAWFKGLARIPEAAGMKLFCVSGHVNNTACFE 254 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +T E+I+ CGG+ G + A IPGG+S P MD+D + + GS L Sbjct: 255 LPLGMTLGEIIDGPCGGMLPGRE-FKACIPGGASTPFFTKEHWH-VPMDFDTVAKAGSRL 312 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT ++V DR T ++ A L VFY ESCG CTPCREG ++ V+ R+ G ++ I Sbjct: 313 GTGGIVVFDRDTCMVAATLNLIVFYARESCGWCTPCREGLPFVQDVLARIEAGEGREEHI 372 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +L E + + + C L A P++GL++ F I E I RC F Sbjct: 373 GILREHIQYL-NYSFCPLAPGAMGPVEGLLRLFEGEIREHIV-LGRCPF 419 >gi|116515042|ref|YP_802671.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256896|gb|ABJ90578.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 438 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 162/406 (39%), Positives = 242/406 (59%), Gaps = 6/406 (1%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDRP 77 + + G + ++ K L+K + II +K SGLRGRGGAGF TG+KW+ M K ++ Sbjct: 28 IHEYCHTGGYQSLKKSLKKLCPEDIILLIKESGLRGRGGAGFPTGIKWNLMLKSNIKEKI 87 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADE EPGT KDR +M PH LIEG +I +F + CA+I++RG++ + L Sbjct: 88 RYLICNADEMEPGTYKDRFLMERLPHQLIEGIIICAFTLHISCAYIFLRGDYYVAEKILN 147 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 ++DE Y G LG N G++ ++ +H GAG YICGEETAL+ SLEG + PR KPPFP Sbjct: 148 KSIDEAYQLGYLGKNILNSGFNFNLFLHTGAGRYICGEETALINSLEGLRANPRFKPPFP 207 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 AN GL+G PT +NNVE+++ +P I++ G+ WY + + GTKL SG V P E Sbjct: 208 ANYGLWGKPTCINNVETLSNIPAIIQHGSEWYKNLSKGKDSGTKLLGFSGKVKNPGLWEL 267 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + IT E++E + GG++ L A PGG+ L + MD+ +E+GS LG Sbjct: 268 PLGITAREVLEDYAGGMKKNL-FLKAWQPGGAGTDILSHKDI-DIKMDFTSFQEIGSRLG 325 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T + +D + +II + + +F+ ESCG CTPCREG W++++++ L K +K +I Sbjct: 326 TGISMAIDNNINIISLLINIEIFFSRESCGFCTPCREGLPWIVKLLKNLEKKNGKKEDIK 385 Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +L E+ ++ G+T CA A P++ +K FR E I + + Sbjct: 386 ILDELCISLGPGKTFCAHAPGAISPLKSALKLFRNEFENSIYKNKK 431 >gi|227497899|ref|ZP_03928079.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832691|gb|EEH65074.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 452 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 192/415 (46%), Positives = 249/415 (60%), Gaps = 15/415 (3%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D++R +L + G ++ + K + ++N VK+S LRGRGGAGF Sbjct: 29 MWDKER---------SWTLEAYRANGGYEGLAKAKTMSAEELVNYVKSSNLRGRGGAGFP 79 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSF+P +P YLVVNADESEPGTCKD + P LIEG I AIG A Sbjct: 80 TGLKWSFLP-APDGKPRYLVVNADESEPGTCKDIPTIMANPQALIEGIAITCRAIGGDHA 138 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179 F+Y+RGE L AV E SGLL + L + I H GAGAYICGEETALL Sbjct: 139 FVYLRGEVTHVYRRLLHAVREATGSGLLDTGFGLDGNQPLRITAHAGAGAYICGEETALL 198 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEG++G PRLKPPFPA GLY PT VNNVE+IA VP IL RGA WY+ G E ++G Sbjct: 199 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPGILARGADWYNAMGTERSKGH 258 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +FS+SGHV +P E IT +LIE G L +PGGSSVP ++ Sbjct: 259 GIFSVSGHVKHPGQFEAPFGITMRQLIEMAGG--VREGHELKFWVPGGSSVPIFGPEEL- 315 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + GS LGT A+ V D + +++ + R + FY+HESCG+CTPCREGT WM Sbjct: 316 DVPLDYESVGAAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 375 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++M RL G +++ L +++ NI GR+ CALGDAAA P++ I FR E Sbjct: 376 QIMLRLEAGQGLPGDVEKLEDIAGNIAGRSFCALGDAAATPVRSGIARFRSEFEA 430 >gi|296112936|ref|YP_003626874.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4] gi|295920630|gb|ADG60981.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4] Length = 472 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%) Query: 11 NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 LY +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM Sbjct: 50 RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE+ Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + LQ A++EC A+ LLG ++ + VH GAG YICGEETAL+ LEG++ Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244 PR KPPFP G +G PT VNNVE++ +P IL G WY G+ GTK+ + Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGV 288 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303 SG V E T ELIE G +L A +PGG+S L A + +M Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406 Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464 >gi|326567951|gb|EGE18048.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC1] Length = 472 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%) Query: 11 NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 LY +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM Sbjct: 50 RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE+ Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + LQ A++EC A+ LLG ++ + VH GAG YICGEETAL+ LEG++ Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244 PR KPPFP G +G PT VNNVE++ +P IL G WY G+ GTK+ + Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGV 288 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303 SG V E T ELIE G +L A +PGG+S L A + +M Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406 Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464 >gi|326577021|gb|EGE26916.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 101P30B1] Length = 472 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%) Query: 11 NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 LY +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM Sbjct: 50 RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE+ Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + LQ A++EC A+ LLG ++ + VH GAG YICGEETAL+ LEG++ Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244 PR KPPFP G +G PT VNNVE++ +P IL G WY G+ GTK+ + Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303 SG V E T ELIE G +L A +PGG+S L A + +M Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406 Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464 >gi|254166582|ref|ZP_04873436.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] gi|289596482|ref|YP_003483178.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469] gi|197624192|gb|EDY36753.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] gi|289534269|gb|ADD08616.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469] Length = 404 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 158/399 (39%), Positives = 239/399 (59%), Gaps = 7/399 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++ D +++G + + K LE G+D II+EV+ SGL GRGGA F TG+K F+ K Sbjct: 6 DASNVEDYLAQGGFKALRKALEYGQDEIISEVETSGLLGRGGAAFPTGLKMKFVRKERK- 64 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P Y+V NADE EPGT KDR +M P+ ++EG +I+++AIGA F Y+R E+ + Sbjct: 65 TPKYIVANADEGEPGTFKDRVLMERNPYQILEGMIISAYAIGAKKGFFYIRYEYKEIAKD 124 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ ++E G+LG N + DI + GAGAY+CGEETAL+ES+EGK+G PR+KPP Sbjct: 125 IERKIEELRRLGILGPNIYGSKFSFDIELVVGAGAYVCGEETALMESIEGKRGYPRIKPP 184 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +PA GL+G PT +NNVE++A VP ++ G + YS G+E G KLFS+SG V P Sbjct: 185 YPAQYGLWGKPTLINNVETLANVPLVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVY 244 Query: 255 EESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E ++ T E+IE G + V+ GG + + + + + KE G Sbjct: 245 EANLGEKTIGEMIELAGGVVG----KFKGVMLGGGAAGFILTEEYLDMPLCFKDAKERGL 300 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT +IV + S +I + ++ F++HESCGQC PCR GT M ++E++V+G +K Sbjct: 301 FLGTGDIIVFNESVNIWDILLNIAKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKE 360 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +I+ L +K ++ ++C LG +A + +KNFR + Sbjct: 361 DIEKLNATAKAMKIASLCPLGTSAMLAYESAMKNFREEL 399 >gi|89055050|ref|YP_510501.1| NADH dehydrogenase (quinone) [Jannaschia sp. CCS1] gi|88864599|gb|ABD55476.1| formate dehydrogenase beta subunit [Jannaschia sp. CCS1] Length = 500 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 215/413 (52%), Gaps = 6/413 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q+R+ F + SL++ + G + + LE + I V SGLRGRGGAG Sbjct: 85 FYASQNRLTFQRCGVIDPLSLAEYEAHGGLTGLRRALEMTPEQITTHVTESGLRGRGGAG 144 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW+ + + Y+V NADE + GT DR IM +P LIEG VIA +GA Sbjct: 145 FPTGIKWNTVRQADGP-QKYIVCNADEGDSGTFADRMIMEGDPFCLIEGMVIAGLGVGAT 203 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ E +++A++ + +LG ++ DI V GAGAY+CGEET+LL Sbjct: 204 KGYIYLRSEYPDAIEVMESAIEITRENNVLGHVLHSEHEFDIEVRVGAGAYVCGEETSLL 263 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA G G PT VNNV S+A VP I +GA Y+ FG ++GT Sbjct: 264 NSLEGKRGVVRAKPPLPALEGFLGRPTVVNNVISLATVPVIFEKGAEHYASFGLGRSKGT 323 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+VN+ E + + EL+ GG G + AV GG + Sbjct: 324 MPVQIAGNVNHGGLFETAFGMPLGELVNDIAGGSATGRP-VKAVQVGGPLGAYFGPEK-F 381 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 Y+ G +G A V+V D S D++ F ESCG+CTPCR G + Sbjct: 382 DTPFAYEPFDGAGGLIGHAGVVVFDDSADMLGMARFAMEFCAIESCGKCTPCRIGAVRGV 441 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ +G A I LL ++ + ++ ++CALG +P+ ++ F Sbjct: 442 ETLDRIREGDATA--IPLLVDLCETMKDGSLCALGGFTPYPVMSALEQFPEEF 492 >gi|326574011|gb|EGE23960.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis CO72] Length = 472 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 158/418 (37%), Positives = 235/418 (56%), Gaps = 11/418 (2%) Query: 11 NLYGLQG-KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 LY +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM Sbjct: 50 RLYHHDAVLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE+ Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + LQ A++EC A+ LLG ++ + +H GAG YICGEETAL+ LEG++ Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRAN 228 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244 PR KPPFP G +G PT VNNVE++ +P IL G WY G+ GTK+ + Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303 SG V E T ELIE G +L A +PGG+S L A + +M Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406 Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464 >gi|326577453|gb|EGE27337.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis O35E] Length = 472 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 158/418 (37%), Positives = 235/418 (56%), Gaps = 11/418 (2%) Query: 11 NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 LY +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM Sbjct: 50 RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE+ Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + LQ A++EC A+ LLG ++ + +H GAG YICGEETAL+ LEG++ Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRAN 228 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244 PR KPPFP G +G PT VNNVE++ +P IL G WY G+ GTK+ + Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303 SG V E T ELIE G +L A +PGG+S L A + +M Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406 Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464 >gi|307544488|ref|YP_003896967.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581] gi|307216512|emb|CBV41782.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581] Length = 510 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 157/415 (37%), Positives = 229/415 (55%), Gaps = 5/415 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F+ + S++D ++ + ++ L I++EVK SGLRGRGGA F Sbjct: 99 LARQQRLTFSRIGVTDPLSIADYLALDGFRGLETALTLEPQAIVDEVKTSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + SD Y+V NADE + GT DR M +P+ LIEG IA A+GA Sbjct: 159 PTGIKWQTVHDAPSD-QKYIVCNADEGDSGTFADRLAMECDPYMLIEGMAIAGLAVGATQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ L A+ +G LG++ G D+ V GAGAYICGEET+LL Sbjct: 218 GYIYLRSEYPLAHRILDEAIARAEQAGYLGADIRGSGRRFDLEVRLGAGAYICGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT VNNV S+A VP IL RG Y+ +G +RGT Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLFGRPTVVNNVLSLAAVPYILDRGGEAYANYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V VE + T EL+E GG L AV GG LP Q Sbjct: 338 LALQLAGNVKRGGLVELAFGTTLRELMEDFGGGT-FTERPLRAVQVGGPLCAYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+G+G V++ D S D+ + F ESCG+CTPCR G+ + Sbjct: 396 DLPLDYETFASVGAGVGHGGVVMFDDSVDMAEQARFSMEFCAVESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 V++R++ + ++LL E+ + +E ++CA+G +P++ ++ +F ++ Sbjct: 456 EVIDRILANQDRDANLELLDELCETMEDGSLCAMGGMTPFPVKSVMTHFPDDLQR 510 >gi|186475493|ref|YP_001856963.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815] gi|184191952|gb|ACC69917.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815] Length = 518 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 146/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S D ++ G + L D + + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSTDDYIANGGIVGLYNALAMTGDAAVEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + +D Y+V NADE + GT DR +M +P LIEG +IA GA Sbjct: 158 PAGIKWRTVRAANAD-QKYIVCNADEGDSGTFSDRLVMESDPFVLIEGMIIAGIVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L+ A+ + A+G LG + + ++ V GAGAY+CGEETALL Sbjct: 217 GHIYVRSEYPHSIATLEEAIGKARAAGWLGDSVLGSEHRFELFVAKGAGAYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A VP I +GA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPLPALEGLFGKPTVINNVITLATVPIIFAKGAAFYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F I+G+V VE + T EL+ + GG G AV GG LP Q Sbjct: 337 LPFQIAGNVKQGGLVELAFGCTLRELMFDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ ++G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 395 DIPLDYEEYAKVGAVVGHGGLVIHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ G +++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIQRIRNGDTSTKQVQLLRDLCDTMVSGSLCAMGGMTPFPVVSALDHFPEDF 507 >gi|171059432|ref|YP_001791781.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6] gi|170776877|gb|ACB35016.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6] Length = 523 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 146/417 (35%), Positives = 220/417 (52%), Gaps = 9/417 (2%) Query: 2 LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ + SL+D + G W + + L+ D I V SGLRGRGGA F Sbjct: 100 LARQQRLTCVRMGVTDPLSLTDYATHGGWAGLRQALQMPADGIWQTVLDSGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + +D Y+V NADE + GT DR ++ +P+ LIEG IA+ A GA Sbjct: 160 PAGIKWRTVAQAQAD-QKYVVCNADEGDSGTFADRMVLEDDPYLLIEGMTIAALACGATR 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ + A++ +G LG N G+ ++ V GAG+Y+CGEETA+L Sbjct: 219 GYVYVRSEYPLAVQVFGEAIERARTAGYLGDNILGSGHAFELEVRMGAGSYVCGEETAML 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV + A P IL GA Y GR + GT Sbjct: 279 ESLEGKRGIVRAKPPIPALSGLFGQPTVINNVLTFAAAPWILSHGAQAYKDHGRGRSTGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL+ GG G + AV GG LP Q Sbjct: 339 LPFQLAGNIARGGLVELAFGVTLRELVFDWGGGSASGRP-VKAVQVGGPLGTYLPESQ-W 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G ++V D + D+ K F ESCG+CTPCR G+ + Sbjct: 397 DIPLDYEAYAAVGAVVGHGGLVVHDDTADLSKLARYAMAFCAIESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIA----QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+V +++++ LL ++ + ++CA+G +P+ + +F Sbjct: 457 EVIDRIVTNHHQPAVREQQVKLLRDLCDTMVSGSLCAMGGMTPYPVLSALNHFPADF 513 >gi|302038847|ref|YP_003799169.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira defluvii] gi|300606911|emb|CBK43244.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira defluvii] Length = 425 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 172/412 (41%), Positives = 248/412 (60%), Gaps = 7/412 (1%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + G ++ K L E + I+ E+K +GLRGRGGAGF TG KW + Sbjct: 8 PWEIDPYLKTGGYEAWRKCLKELTPNDIVGEIKKAGLRGRGGAGFPTGTKWDKVL-NHRV 66 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + Y V NA E EPGT KDR +++H PH LIEGC+IAS + A ++IYV E+ E + Sbjct: 67 QERYFVCNAGEHEPGTFKDRHLLKHIPHQLIEGCLIASRTVNAKASYIYVNHEYAEEEAN 126 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ A+ + GLLG N G D+D+ V+ G G+Y+ GEETA+LES++G+ PR KPP Sbjct: 127 LRKAITQARERGLLGKNILGTGVDLDLEVYSGHGSYVAGEETAMLESMQGRPAMPRQKPP 186 Query: 195 F-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 F P + GLYG PT VNNVE++ +P IL+ GA+W++ G E GT LFS+SG VN P Sbjct: 187 FYPTDFGLYGKPTLVNNVETLCNIPQILKNGAAWFTQVGTEKCPGTMLFSLSGSVNRPGV 246 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M +T +LIE GG+ G + AV PGG + + A Q+ MD+D LK+ G+ Sbjct: 247 YEMPMGVTIRDLIETCGGGVPNGRK-IKAVFPGGPAFSMVTADQL-DLPMDFDSLKKAGT 304 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG+A IV+D +T ++ A + S F+K ESCGQC PCR GT + +M+++ +G ++ Sbjct: 305 GLGSAGTIVIDDATCMVAATLKYSNFFKGESCGQCPPCRMGTINLATLMDKIERGEGSRK 364 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++D L ++ ++G C L AA +Q ++ F+ EE I + RC FQ Sbjct: 365 DLDSLLQLCGFVKGTGYCTLITGAAVLVQSSLRLFQHEFEEHI-RLQRCPFQ 415 >gi|70733835|ref|YP_257475.1| formate dehydrogenase subunit beta [Pseudomonas fluorescens Pf-5] gi|68348134|gb|AAY95740.1| formate dehydrogenase, beta subunit [Pseudomonas fluorescens Pf-5] Length = 519 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 156/417 (37%), Positives = 232/417 (55%), Gaps = 10/417 (2%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q R+ G+ SL+D + G ++ + + + G + + V SGLRGRGGA F Sbjct: 98 LKNQQRLLFARAGITRPLSLADYRAHGGFEGLTRSIALGGEQTVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 158 PAGIKWRTVRDTPP-QQKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMAIAGLAVGASY 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ + +L+ A+D +G LG+N+ G D+ V GAGAYICGEETALL Sbjct: 217 GYIYVRSEYPQAVATLREALDIARDAGYLGANAGGSGQAFDMEVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +SLEGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA +Y +G + GT Sbjct: 277 DSLEGKRGIVRAKPPIPALQGLFGQPTLVHNVLTLASVPLILAKGAPFYRDYGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V + VE + +T EL+E + GG G L A GG +P Q Sbjct: 337 MPFQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ MG+ LG V+V D S D+ + F ESCG+CTPCR G+ + Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDSLDLARMARFALQFCAEESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVK----GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ G ++ + +L ++ ++ ++CALG ++P+ +K+F Sbjct: 455 EVIDRLLAAPDQGRRDEQAL-ILKDLCDTLQYGSLCALGGMTSYPVASALKHFPADF 510 >gi|319795811|ref|YP_004157451.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS] gi|315598274|gb|ADU39340.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS] Length = 519 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ S++D + + + + L + ++ +V SGLRGRGGA F Sbjct: 100 LKKQERLTFARMGITDPVSVADYEAHEGYAGLRRALGLKPEEVVQQVLDSGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR M +P L+EG IA A GA Sbjct: 160 PAGIKWKTVMATPA-AQKYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMTIAGIATGATK 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ ++ A+ +G LG N G + V GAG+Y+CGEETALL Sbjct: 219 GYVYIRSEYPHAIATMNEAIRAAETAGFLGDNILGSGRTFWLEVRKGAGSYVCGEETALL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA Y FG +RGT Sbjct: 279 ESLEGKRGIVRAKPPLPAITGLFGQPTLINNVITLASVPLILARGAEHYRDFGVGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + VE++ +T EL+ + GG G + AV GG LP Q Sbjct: 339 LPMQLAGNIKHGGLVEKAFGVTLRELLYDYGGGSASGRP-IKAVQVGGPLGAYLPESQ-W 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G +G ++V D + D+ K F ESCG+CTPCR G+ + Sbjct: 397 DLPLDYEAYAAVGGTVGHGGIVVHDDTADLSKLARYAMEFCAIESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++++ + + LL ++ + ++CA+G +P+ + +F Sbjct: 457 EVIDKIRADNKRVEHVILLRDLCNTMVHGSLCAMGGMTPFPVLSALDHFPQDF 509 >gi|222087421|ref|YP_002545958.1| formate dehydrogenase [Agrobacterium radiobacter K84] gi|221724869|gb|ACM28025.1| formate dehydrogenase [Agrobacterium radiobacter K84] Length = 518 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F ++ SL D G + + + I+ EV SGLRGRGGAG Sbjct: 98 FLREQTRLTFARCGVIESLSLEDYEVHGGLKGLRRAVGMAAADIVKEVMDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + Y+V NADE + GT DR IM +P LIEG IA A GA Sbjct: 158 FPTGIKWKTVLDAP-GARKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ + AV+ +G+LG++ G DI + GAGAY+CGEETAL Sbjct: 217 KGFVYARSEYPHAIAVMTEAVEVARGAGILGASVLGSGKAFDIEIRTGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RG Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGATFYRDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + ++ ++++K GG G + AV GG P + Sbjct: 337 TIPLQIAGNVKYGGLYETAFGLSLGDIVDKIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +++ +GI ++ LL ++ ++ ++CALG +P+ + +F Sbjct: 455 VETADKIARGIEPEKNRVLLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508 >gi|297570901|ref|YP_003696675.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium haemolyticum DSM 20595] gi|296931248|gb|ADH92056.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium haemolyticum DSM 20595] Length = 441 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 192/414 (46%), Positives = 251/414 (60%), Gaps = 11/414 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGM 64 + TN + + +L + G + + + + ++ + N +K SGLRGRGGAGF TG+ Sbjct: 13 VLTNNWDTERPWTLDGYRATGGYQAIARAWDINQEKGALTNLIKESGLRGRGGAGFPTGL 72 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWSF+P P YLVVNADESEPGTCKD + PH LIEG I AIG H FIY Sbjct: 73 KWSFLPPEDGG-PRYLVVNADESEPGTCKDIPFLMANPHLLIEGMAICLMAIGGHDGFIY 131 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKL--GYDVDIIVHHGAGAYICGEETALLESL 182 +RGE + L AAV E +G++G+ YD++I VH GAGAYICGEETALL+SL Sbjct: 132 LRGEVVHVYRRLLAAVREAKEAGIIGTGCGPNGDYDINITVHAGAGAYICGEETALLDSL 191 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG--RENNRGTK 240 EG +GQPRLKPPFPA GLY PT VNNVESIA VP I+ GA W++ G +N+ G Sbjct: 192 EGFRGQPRLKPPFPAVAGLYARPTVVNNVESIASVPGIINNGAEWFTAMGAGTKNSPGHG 251 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SGHV P E IT EL++ G L GGSS P + Sbjct: 252 IFSLSGHVKNPGQFEAPFGITMRELLDMAGG--IREGHELKFFAIGGSSAPLFTPEHL-D 308 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + Y+ + + GS L T A+ + D + +++ + R + FY+HESCG+CTPCREGT WM + Sbjct: 309 VPLGYEEVAQAGSMLATRAIQIFDETVSVVRVVSRWTDFYQHESCGKCTPCREGTFWMRQ 368 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 +M R G + +IDLLY+V+ NI GR+ CALGDAAA PI+ I FR E+ Sbjct: 369 IMHRFEAGQGTEADIDLLYDVASNIAGRSFCALGDAAATPIRSAIDLFRSEFED 422 >gi|170698430|ref|ZP_02889503.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10] gi|170136683|gb|EDT04938.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10] Length = 525 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA GA Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGITTGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A+ +G LG G+ D+ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERVLGSGHAFDLHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ + GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|326561160|gb|EGE11525.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 7169] gi|326569469|gb|EGE19529.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC8] gi|326572769|gb|EGE22755.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC7] Length = 472 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 157/418 (37%), Positives = 235/418 (56%), Gaps = 11/418 (2%) Query: 11 NLYGLQG-KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 LY +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM Sbjct: 50 RLYHHDAVLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE+ Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L+ A++EC A+ LLG ++ + +H GAG YICGEETAL+ LEG++ Sbjct: 169 VLAAKRLKNAINECVANHLLGDGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRAN 228 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244 PR KPPFP G +G PT VNNVE++ +P IL G WY G+ GTK+ + Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303 SG V E T ELIE G +L A +PGG+S L A + +M Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406 Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464 >gi|194288743|ref|YP_002004650.1| NAD-dependent formate dehydrogenase subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193222578|emb|CAQ68581.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 520 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 152/414 (36%), Positives = 221/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 100 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 160 FPTGIKWKTVLGAQA-AVKYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVGAE 218 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L++A+ A+G LG + G + V GAGAY+CGEETAL Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT +NNV S+A VP IL RGA Y +G +RG Sbjct: 279 LESLEGRRGVVRAKPPLPALKGLFGQPTVINNVISLATVPVILARGAQCYRDYGMGRSRG 338 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ + VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 339 TLPFQLAGNIRHGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 396 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ G +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 397 FDVPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + VM+R++ G R + L+ ++ + ++CA+G +P+ + F Sbjct: 457 VEVMDRIIAGEQPVRHVQLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 510 >gi|254482995|ref|ZP_05096230.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine gamma proteobacterium HTCC2148] gi|214036680|gb|EEB77352.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine gamma proteobacterium HTCC2148] Length = 509 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGLQGKS-LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q R+ GL L +SR +D ++ L + I++EV SGLRGRGGA F Sbjct: 99 FAGQQRLTFARSGLDDPLCLDAYLSRHGFDGLEHALHLPPEDIVDEVTRSGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW+ + + D Y+ NADE + GT DR +M +P+ LIEG IA A+GA Sbjct: 159 PAGIKWNTVLQAAGD-EKYIACNADEGDSGTFADRLLMESDPYMLIEGMTIAGLAVGAQQ 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ E + A+ + A+G LG + + GAG+YICGEETA+L Sbjct: 218 GYIYLRSEYPHAWEVMHTAIAKAEAAGYLGEGICDSDRQFHLELRLGAGSYICGEETAML 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG++G R KPP PA GL+G PT VNNV ++A +PTI+ GA Y+ G+ + GT Sbjct: 278 ESLEGRRGVVRAKPPLPAIEGLFGKPTVVNNVLTLAAIPTIMAGGAEAYAALGQGRSLGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ VE T ++++ GG R G + A+ GG LP + Sbjct: 338 ITLQLAGNIKNGGLVEVPYGATLRAVLDQFGGGTRSGRP-IRAIQVGGPLGAYLP-EPLW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ G LG V+V D + D+ + F ESCG+CTPCR G+ Sbjct: 396 DTPLDYEAFAAAGGMLGHGGVVVFDDTVDMAQQARFAMAFCAEESCGKCTPCRVGSVRGT 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 VM+R++ + + LL ++ + +E ++CA+G P++ ++ F Sbjct: 456 EVMDRIIARESLDENMALLDDLCETMELGSLCAMGGLTPNPVRSALQYFPEDF 508 >gi|298346123|ref|YP_003718810.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063] gi|304390117|ref|ZP_07372071.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657374|ref|ZP_07910256.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236184|gb|ADI67316.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063] gi|304326599|gb|EFL93843.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491846|gb|EFU81455.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 442 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 184/407 (45%), Positives = 243/407 (59%), Gaps = 12/407 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G+ +L +RG + + K ++ VK SGLRGRGGAGF G+KW Sbjct: 19 ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YL VNADESEPGTCKD + PH LIEG I S AI AF+Y+R Sbjct: 79 SFLP-PDDGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AA+ E +GLLG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT +NNVE+I+ V I + +WY+ G E ++G +FS+SG Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E IT +L+ +CGG+R G D L GGSS P ++ + Y+ Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHD-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ + R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 G + ++D L ++ I GR CALGDAA P++ I+ FR E Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFE 414 >gi|238026515|ref|YP_002910746.1| formate dehydrogenase subunit beta [Burkholderia glumae BGR1] gi|237875709|gb|ACR28042.1| Formate dehydrogenase, beta subunit [Burkholderia glumae BGR1] Length = 524 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G D + + L E+ SGLRGRGGA F Sbjct: 102 LKRQQRLTFARIGITDPLSIDDYLAHGGLDGLKRALTLDGAAACEELIESGLRGRGGAAF 161 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA GA Sbjct: 162 PAGIKWRTVRQAQA-TQKYVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVVTGATR 220 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG + G ++ V GAGAY+CGEETALL Sbjct: 221 GHIYVRSEYPHAIAALNEAIARARAAGWLGESVLGSGLGFELEVAKGAGAYVCGEETALL 280 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 281 ESLEGKRGVVRAKPPLPALEGLHGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGT 340 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL+ + GG G A GG LP Q Sbjct: 341 LPFQLAGNIRQGGLVELAFGVTLRELLFEFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 398 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 399 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMQFCVLESCGKCTPCRIGSTRGV 458 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G ++++ LL ++ + ++CA+G +P+ + +F Sbjct: 459 ETIARIRGGDTSEKQVHLLRDLCDTMMAGSLCAMGGMTPYPVLSALDHFPEDF 511 >gi|315654702|ref|ZP_07907608.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC 51333] gi|315491166|gb|EFU80785.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC 51333] Length = 442 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 184/407 (45%), Positives = 243/407 (59%), Gaps = 12/407 (2%) Query: 8 IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I ++++G+ +L +RG + + K ++ VK SGLRGRGGAGF G+KW Sbjct: 19 ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P P YL VNADESEPGTCKD + PH LIEG I S AI AF+Y+R Sbjct: 79 SFLP-PDDGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 GE L AA+ E +GLLG D+ I H GAGAYICGEETALL+SLEG++ Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G PRLKPPFPA GLY PT +NNVE+I+ V I + +WY+ G E ++G +FS+SG Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 HV P E IT +L+ +CGG+R G D L GGSS P ++ + Y+ Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHD-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 + GS L T A+ V D +T +++ + R FY+HESCG+CTPCREGT WM ++M RL Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 G + ++D L ++ I GR CALGDAA P++ I+ FR E Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFE 414 >gi|326561571|gb|EGE11912.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 46P47B1] gi|326567652|gb|EGE17760.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 12P80B1] Length = 472 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%) Query: 11 NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 LY +L+D + + + L K + +K + +RGRGGAGF+ G+KW+FM Sbjct: 50 RLYHHDALLTLADYETLDGFVGLKNALSKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE+ Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + LQ A++EC A+ LLG ++ + VH GAG YICGEETAL+ LEG++ Sbjct: 169 VLAAKRLQNAINECIANRLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244 PR KPPFP G +G PT VNNVE++ +P IL G WY G+ GTK+ + Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303 SG V E T ELIE G +L A +PGG+S L A + +M Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D + + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406 Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 + G AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464 >gi|220920302|ref|YP_002495603.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219944908|gb|ACL55300.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 519 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 156/416 (37%), Positives = 218/416 (52%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S++D + G + + + LE G ++ VK SGLRGRGGAG Sbjct: 98 FLARQQRLTFHRCGVVDPVSVADYRAHGGYRGLARALEIGPADTVDAVKVSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW+ + +D Y+V NADE + GT DR +M +P TLIEG IA A+GA Sbjct: 158 FPTGIKWNTVMLAEAD-QKYVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ + L+ A+ +G+LG N G D + V GAGAYICGEET+L Sbjct: 217 RGYIYLRSEYPNAYQILKTAIAAGERAGVLGRNILGSGKDFFLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT VNNV S A VP IL G Y+ +G +RG Sbjct: 277 LESLEGKRGIVRAKPPIPALKGLFGRPTLVNNVLSFAAVPWILEHGGEAYANYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G+V Y +E + IT +IE GG + A GG P + Sbjct: 337 TLPIQLAGNVKYGGLIETAFGITLRAVIEDFGGG-SLSGRPVRAAQVGGPLGAYFP-DVL 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ +G V+V D + D+ + F ESCG+CTPCR G Sbjct: 395 FDTPMDYEAFAARKGLVGHGGVVVFDDTVDMARQARFAFEFCAVESCGKCTPCRIGAVRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 MERL+ G A + L+ ++ + + ++CA+G P+ I +F + Sbjct: 455 RETMERLLAGEAPAEPLRLIEDLCEVMTDGSLCAMGGLTPVPVMSAITHFPEDFDR 510 >gi|115526637|ref|YP_783548.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] gi|115520584|gb|ABJ08568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] Length = 518 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 226/413 (54%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F +S+ D + G ++ + + L D II++V SGLRGRGGAGF Sbjct: 98 LKRQTRLTFVRCGVTDPRSIEDYCANGGYEGLQRALALPSDAIIDDVVKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + ++ Y+ NADE + GT DR +M +P+ +IEG IA A+GA Sbjct: 158 PTGIKWRTVAQTEAEH-KYICCNADEGDSGTFADRMLMEGDPYMVIEGMTIAGIAVGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ES+ AA+ +G LG +D DI V GAGAYICGEET+++ Sbjct: 217 GYIYIRSEYPYAVESMNAAIAGARRAGWLGPGLGRSRHDFDIEVRVGAGAYICGEETSMM 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA+ GL+G PT +NNV + A VP IL GA Y+ G +RGT Sbjct: 277 ESIEGKRGLVRAKPPLPAHKGLFGKPTVINNVLTFAAVPFILAGGAQAYADCGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K ++G+V + E + IT EL+++ GG G + AV GG P + Sbjct: 337 KPIQLAGNVKHGGLFEVAFGITLGELVDEVGGGTASGRP-VRAVQVGGPLGAYFPRA-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F ESCG+CTPCR G+ + Sbjct: 395 DTPFDYEAFAARSGLVGHGGVVVFDDTVDMAKQARFAMQFCSIESCGKCTPCRIGSVRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++++G + I LL ++ + ++ ++CALG +P+ +K+F Sbjct: 455 ETIDKIIEGDRSAQNIALLEDLCQTMKLGSLCALGGFVPFPVLSALKHFPEDF 507 >gi|171316163|ref|ZP_02905387.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5] gi|171098672|gb|EDT43467.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5] Length = 525 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A+ +G LG + D+ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERVLGSAHAFDLHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ + GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|330809409|ref|YP_004353871.1| formate dehydrogenase beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377517|gb|AEA68867.1| Formate dehydrogenase beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 519 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 161/417 (38%), Positives = 226/417 (54%), Gaps = 10/417 (2%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ Q SL D +RG + + + ++ ++ V SGLRGRGGA F Sbjct: 98 LKSQQRLLFARAGITQPLSLDDYRARGGFLGLARSIQMDGADVVASVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRDAV-GAQKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGIAVGATM 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ +G LG+N S G DI V GAGAYICGEETALL Sbjct: 217 GYIYVRSEYPAAISTLNEALRIARDAGYLGANVSGSGRAFDIEVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA +Y FG + GT Sbjct: 277 ESLEGKRGTVRAKPPLPAIQGLFGLPTLVHNVVTLASVPIILEKGAQFYRDFGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + ++ EL+E + GG G L A GG +P Q Sbjct: 337 MPFQLAGNVRQGGLVERAFGLSLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPAQ-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ MG+ LG V+V D S D+ + F ESCG+CTPCR G+ + Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDSLDMAQMARFALQFCAEESCGKCTPCRIGSTRGV 454 Query: 360 RVMERL----VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL G Q++ + LL ++ ++ ++CALG ++P+ +K F Sbjct: 455 EVVDRLIASTEAGARQEQAL-LLQDLCDTLQYGSLCALGGMTSYPVASALKYFPADF 510 >gi|254441379|ref|ZP_05054872.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Octadecabacter antarcticus 307] gi|198251457|gb|EDY75772.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Octadecabacter antarcticus 307] Length = 505 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 146/416 (35%), Positives = 218/416 (52%), Gaps = 7/416 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q R+ F + SL D + G + + + I+ EV SGLRGRGGAGF Sbjct: 90 MKGQTRLTFQRCGVIDPLSLPDYEAHGGLVGLRRAIAMTPADIVGEVTTSGLRGRGGAGF 149 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW+ + +D Y+V NADE + GT DR IM +P TLIEG +IA A+ A Sbjct: 150 PTGIKWNTVLGAKAD-QKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMIIAGLAVEATK 208 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ + + AV +GLLG++ G D+ + GAGAY+CGEET+LL Sbjct: 209 GYVYLRSEYPDAIDIMDKAVVLARHAGLLGADVLGSGRSFDMEIRVGAGAYVCGEETSLL 268 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA G G PT VNNV S+A VP ++ +GA Y+ FG ++GT Sbjct: 269 NSLEGKRGVVRAKPPLPALEGFLGKPTVVNNVISLATVPVVMEKGAQHYADFGLGRSKGT 328 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V + E + + +L++K GG + AV GG +P + Sbjct: 329 IPIQIAGNVKFGGLYETAFGMPLGDLVDKVAGG-SLSGRPVKAVQVGGPLGAYMPRSK-F 386 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 Y+ G +G A ++V D S D++ F ESCG+CTPCR G + Sbjct: 387 ETPFGYEEFDGQGGLIGHAGMVVFDDSIDMLGMARFAMEFCAVESCGKCTPCRIGAVRGV 446 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 ++R+ G I+LL ++ + ++ ++CALG +P+ + NF + Sbjct: 447 ETIDRI--GKGDTAAIELLEDLCETMKDGSLCALGGFTPFPVLSALHNFPDDFAAK 500 >gi|115350950|ref|YP_772789.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria AMMD] gi|115280938|gb|ABI86455.1| formate dehydrogenase beta subunit [Burkholderia ambifaria AMMD] Length = 525 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDVACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A+ +G LG + + D+ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHVLGSAHAFDLHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ + GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ KG +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRKGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|193076538|gb|ABO11196.2| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978] Length = 444 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 160/406 (39%), Positives = 230/406 (56%), Gaps = 14/406 (3%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 D + + K L ++ +KA+ ++GRGGAGF G+KWS M P YL Sbjct: 33 DDYEALEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 + NADE EPGT KDR +M PH LIEG +IA + + A +I++RGE+I + L A+ Sbjct: 92 ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151 Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 ++ A G LG N G++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP Sbjct: 152 EQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257 G +G PT VNNVE+ +P I+ RG WY G G+ + GTK++ SG V +P E Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 T E+IE+H GG+R G L A +PGG+S LPA + MD + + + GS LGT Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 ++V+D + ++ L F+ ESCG CTPCR+G W ++ ++ L G +K +ID Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389 Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQG----LIKNFRPLIEERIDQ 418 L E+++ + G+T CA W +K+FR E ++ Sbjct: 390 LQELTRKLWIGKTFCAHATRCEW---SRLWVALKHFRSEFEAKVTD 432 >gi|172059963|ref|YP_001807615.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6] gi|171992480|gb|ACB63399.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6] Length = 525 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+ A+ +G LG + + D+ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHVLGSAHAFDLHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ + GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|90426117|ref|YP_534487.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] gi|90108131|gb|ABD90168.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] Length = 518 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + +S+ D + G ++ +++ L + II++V SGLRGRGGAGF Sbjct: 98 LKRQTRLTFARCGVIDPRSVEDYRAHGGYEGLERALALTSEAIIDDVIKSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + + Y+ NADE + GT DR IM +P+ +IEG IA A+GA Sbjct: 158 PTGIKWRTVAQAAA-AQKYICCNADEGDSGTFADRMIMEGDPYMVIEGMTIAGIAVGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ E++ AA+ +G LG +D DI V GAGAYICGEETA+L Sbjct: 217 GYIYIRSEYPHAVEAINAAIAGARRAGYLGPGIGRSRHDFDIEVRVGAGAYICGEETAML 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA+ GL+G PT +NNV S A +P IL GA Y+ G +RGT Sbjct: 277 ESIEGKRGVVRAKPPLPAHKGLFGQPTVINNVLSFAAIPFILAGGAQAYADCGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K + G++ + E + IT EL++ GG G + AV GG P + Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDDIGGGTASGRP-VRAVQVGGPLGAYFPRE-LF 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G V+V D + D+ K F ESCG+CTPCR G+ + Sbjct: 395 DTPFDYEAFAARSGLVGHGGVVVFDDTVDMAKQARFAMQFCAIESCGKCTPCRIGSQRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G + I LL ++ + ++ ++CALG +P+ + +F Sbjct: 455 ETIDKIINGDRAPQNIALLEDLCQTMKLGSLCALGGFVPYPVLSALTHFPEDF 507 >gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] Length = 620 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 146/405 (36%), Positives = 223/405 (55%), Gaps = 9/405 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + +S+ D ++ + + + E +I EVK S L GRGGA F G+KW Sbjct: 210 LLKRIGKVDPESIDDYLATDGYAGLRRAFEMEPAQVITEVKDSRLMGRGGAAFPAGIKWE 269 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 K + P YLV NADESEPGT KDR I+ +P LIE IA +AIGA +IY+RG Sbjct: 270 STAKQPA-TPRYLVCNADESEPGTFKDRSILEGDPFALIESMTIAGYAIGAERGYIYLRG 328 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L A+++ G LG N G+ ++ + GAGAYICGEETA+ S+EG + Sbjct: 329 EYPRAYRMLSNAIEKARERGFLGENIQGKGWSFELEIRRGAGAYICGEETAIFNSIEGYR 388 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+G PT VNNVE++ VP I++ G + Y+ G E + G KLF +SG Sbjct: 389 GEPRTKPPFPFEAGLFGKPTVVNNVETLCNVPLIMQLGGAEYAKIGTEGSTGPKLFCVSG 448 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 ++ P E T +++E G L AV+ GG++ + A ++ + ++ Sbjct: 449 NLVRPGVYEVPFGATLGDILELAGG--VPQGRKLQAVLLGGAAGVFVRADEL-DIPLTFE 505 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G++ + LG+ V+ D + D+ + R++ F++ ESCGQC PCR GT + R++ Sbjct: 506 GVRAAKATLGSGVVLAFDDTVDLSGILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIM 565 Query: 367 KGIAQKR----EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 + +I +L +V ++ +IC LG AA ++ I Sbjct: 566 HNGHDAKAKGNDIHILRDVGLVMKDASICGLGQAAWNAVESAIDR 610 >gi|320105162|ref|YP_004180753.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644] gi|319752444|gb|ADV64204.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644] Length = 475 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 182/426 (42%), Positives = 259/426 (60%), Gaps = 10/426 (2%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59 M + + N G +L +RG + K L D ++N VKAS LRGRGGAG Sbjct: 1 MAQFEPVLTRNWNVENGHTLRVYEARGGYQAARKALTTMSPDDVVNLVKASELRGRGGAG 60 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KWSF+PK ++ + VN DESEP T +R ++ +PH +EG +I+ FA A Sbjct: 61 FPTGLKWSFLPKDRTE--TLMCVNGDESEPATFNNRLLIERDPHQFLEGILISCFATRAT 118 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A++Y+R E+I + ++ A+ E A+G LG N G+D+ +++H GAGAYICGEET L Sbjct: 119 TAYVYLRFEYIAGYKMMERAIAEAEAAGHLGRNIYGSGFDLKVVLHRGAGAYICGEETGL 178 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGK+G PR+KPPFPA G + PT VNNVE++ VP I+ RGA W+ G + G Sbjct: 179 IESLEGKRGWPRIKPPFPAVEGAFRKPTVVNNVETLCCVPHIVERGADWFKSIGTPKSYG 238 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 KL+ +SGHVN VE + +T +LIE+H GG+ G A +PGG S+ L A Sbjct: 239 PKLYCVSGHVNKQVCVELPLGVTTRQLIEEHAGGVWKGRKA-KAAVPGGISMGLL-AESE 296 Query: 299 RGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +D++ L+ G GLGTAAV V+D + II + + F+ HESCGQCTPCREGT W Sbjct: 297 FDVPLDFEALRPTGCLGLGTAAVTVLDETMPIIDYLAICARFFAHESCGQCTPCREGTNW 356 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + + + R+ G + ++D+L ++S+N+ G TIC L D AAWP++ + FR +EE Sbjct: 357 LNKTIHRIKNGGGRLEDLDILEQLSQNMGITPGTTICGLADGAAWPVKNALAKFRGELEE 416 Query: 415 RIDQYH 420 I + Sbjct: 417 YIRTHQ 422 >gi|317125324|ref|YP_004099436.1| formate dehydrogenase subunit beta [Intrasporangium calvum DSM 43043] gi|315589412|gb|ADU48709.1| formate dehydrogenase beta subunit [Intrasporangium calvum DSM 43043] Length = 509 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 154/416 (37%), Positives = 229/416 (55%), Gaps = 5/416 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + + ++ G W + + L ++ E+ ASGLRGRGGAGF Sbjct: 95 LARQHRVSFARVGVIAPTDIAAYEEHGGWAGLRRALVMEPAEVVEELAASGLRGRGGAGF 154 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + +D ++ N DE + GT DR + +P TLIEG ++A+ A+GA Sbjct: 155 PTGIKWRTVLQTSAD-LKFVCCNLDEGDSGTFADRMLAEGDPFTLIEGMLVAAHAVGARE 213 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY R E+ +L+ A+D YA G LG D+ V GAGAYICGEET++L Sbjct: 214 GYIYCRSEYPAAAATLRRAIDVAYAHGWLGDRIQGSDLSFDLFVRLGAGAYICGEETSML 273 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG++G+ R KPP PA GL+G PT VNNV + A VP IL G + Y+ G +RGT Sbjct: 274 ESLEGRRGEVRAKPPIPAIEGLFGRPTVVNNVLTFAAVPMILADGGAAYAALGSGRSRGT 333 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++F ++G+V VE I+ +L+E + GG G + AV GG LPA + Sbjct: 334 QVFQLAGNVRQGGIVETDFGISLRDLVEDYGGGTVTGRP-VRAVQVGGPLGAYLPATDL- 391 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ L E+G LG V+V D + D + F ESCG+CTPCR G+ + Sbjct: 392 DVPMDYEALLEVGGMLGHGGVVVWDDTFDAARMARFAMEFCAKESCGKCTPCRIGSQRGV 451 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 ++R++ G ++R + LL ++ + ++CA+G P+Q I++F + R Sbjct: 452 ETIDRIIAGTERERNLLLLDDLCTTMTKGSLCAMGGLTPMPVQSAIRHFAEDFDRR 507 >gi|126453004|ref|YP_001067207.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 1106a] gi|167846783|ref|ZP_02472291.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei B7210] gi|242317218|ref|ZP_04816234.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1106b] gi|126226646|gb|ABN90186.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1106a] gi|242140457|gb|EES26859.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1106b] Length = 527 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|217420419|ref|ZP_03451924.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576] gi|217395831|gb|EEC35848.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576] Length = 521 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG S + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGTSVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|206561321|ref|YP_002232086.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia cenocepacia J2315] gi|198037363|emb|CAR53296.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia cenocepacia J2315] Length = 525 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + G + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQARA-AQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELQVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|326402927|ref|YP_004283008.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] gi|325049788|dbj|BAJ80126.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum AIU301] Length = 434 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 162/416 (38%), Positives = 237/416 (56%), Gaps = 7/416 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72 G Q ++ G + + K + ++ EVK + +RGRGGAGF G KW P+ Sbjct: 15 GRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAGRKWEGAPRGA 74 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + R YLV+NADE EPG+ KDR ++ PH +IEG +I +FA+ A A+I+VRGE++ Sbjct: 75 DAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAYIFVRGEYVLA 134 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 E L AV E A G LG++ G+ + I VH G YICGE +AL +LEGK+ PR Sbjct: 135 MERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSALEGKRAVPRT 194 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNY 250 +PP GL+G PT VNNVE++ VP+I+ RGA W+ G R GTKL+ +SG VN Sbjct: 195 RPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTKLYGVSGRVNR 254 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E + +E+IE+H GG+R G++ AV+PGG+S + MD+D + + Sbjct: 255 PGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFIMREN-FDVPMDFDSVGK 312 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 +GS LGTA ++V+D+ + + + F+ ESCG CTPCR+G W+ R++ L G Sbjct: 313 IGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPWVERILTALEAGEG 372 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + +I+LL + GRT C L A P++ +K FR E + + H C + Sbjct: 373 EPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHVSERH-CPWH 427 >gi|188584099|ref|YP_001927544.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001] gi|179347597|gb|ACB83009.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001] Length = 519 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 143/416 (34%), Positives = 219/416 (52%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S+ D + G + ++ L+ + ++ +V+ SGLRGRGGAG Sbjct: 98 FLARQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAEGVVAQVRDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW+ + SD Y+V NADE + GT DR +M +P LIEG IA+ A GA Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + ++L+ A+ +G+LG N G + V GAGAYICGEET+L Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVKAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA G G PT VNNV + VP I+ GA Y+ +G + G Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPWIMEHGAKAYAEYGMGRSLG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ + +E + IT ++I++ GG G + AV GG P + Sbjct: 337 TLPIQLAGNIKHGGLIEYAFGITIRQVIDEFGGGTASGRP-VRAVQVGGPLGAYFPDE-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + +G ++V D + D+ K F ESCG+CTPCR G Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + M++++ GI + + L+ ++ + + ++CA+G P+ I NF Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510 >gi|126439777|ref|YP_001059919.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668] gi|126219270|gb|ABN82776.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668] Length = 521 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|90416713|ref|ZP_01224643.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2207] gi|90331466|gb|EAS46702.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium HTCC2207] Length = 515 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 145/414 (35%), Positives = 220/414 (53%), Gaps = 5/414 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 Q R+ + GL L + + + ++ L+ I+++VK SGLRGRGGA F Sbjct: 91 FKSQQRLTYSRAGLGDPVCLDNYQALNGFKGLNNALKMTGQQIVDQVKDSGLRGRGGAAF 150 Query: 61 STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 G+KW + D Y+V NADE + GT DR +M +P+ LIEG ++A A+GA Sbjct: 151 PAGIKWQTVHDAGKDGCQKYIVCNADEGDSGTFADRLVMEADPYQLIEGMIVAGLAVGAT 210 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ + L A+D A+ LG N G + V GAGAYICGEET+L Sbjct: 211 QGYIYLRSEYPVAHKLLNIAIDRAIAANFLGENIQGSGKTFYLEVRLGAGAYICGEETSL 270 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT VNNV ++A + TIL +GA Y FG +RG Sbjct: 271 LESLEGKRGMVRAKPPLPAIEGLFGMPTVVNNVLTLAAISTILEQGADSYQNFGMGRSRG 330 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ +E + +T E++E + G + A+ GG LP Q Sbjct: 331 TLAIQLAGNIKRGGLIELAFGVTLREVVEDYGQGT-YSGRPIRAIQVGGPLGAFLPESQ- 388 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ + + +G ++V D + D+ F ESCG+CTPCR G+ Sbjct: 389 WDTPMDYEAFAAIKAMIGHGGIVVFDDTADMAAQARFAMEFCVVESCGKCTPCRIGSVRG 448 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V++R+V + + LL+E+ +E ++CA+G +P++ + +F Sbjct: 449 VEVIDRIVANENRDNNLILLHELCDTMEFGSLCAMGGMTPYPVRSALAHFPNDF 502 >gi|167563645|ref|ZP_02356561.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis EO147] Length = 522 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 139/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ +L A+ +G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GYVYVRSEYPHAIATLDDAIARARDAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ G ++++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIAKIRAGDTSEKQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|148260120|ref|YP_001234247.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5] gi|146401801|gb|ABQ30328.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5] Length = 434 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 162/416 (38%), Positives = 237/416 (56%), Gaps = 7/416 (1%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72 G Q ++ G + + K + ++ EVK + +RGRGGAGF G KW P+ Sbjct: 15 GRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAGRKWEGAPRGA 74 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + R YLV+NADE EPG+ KDR ++ PH +IEG +I +FA+ A A+I+VRGE++ Sbjct: 75 DAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAYIFVRGEYVLA 134 Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 E L AV E A G LG++ G+ + I VH G YICGE +AL +LEGK+ PR Sbjct: 135 MERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSALEGKRAVPRT 194 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNY 250 +PP GL+G PT VNNVE++ VP+I+ RGA W+ G R GTKL+ +SG VN Sbjct: 195 RPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTKLYGVSGRVNR 254 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E + +E+IE+H GG+R G++ AV+PGG+S + MD+D + + Sbjct: 255 PGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFIMREN-FDVPMDFDSVGK 312 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 +GS LGTA ++V+D+ + + + F+ ESCG CTPCR+G W+ R++ L G Sbjct: 313 IGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPWVERILTALEAGEG 372 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + +I+LL + GRT C L A P++ +K FR E + + H C + Sbjct: 373 EPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHVSERH-CPWH 427 >gi|170751378|ref|YP_001757638.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM 2831] gi|170657900|gb|ACB26955.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM 2831] Length = 519 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 144/415 (34%), Positives = 214/415 (51%), Gaps = 5/415 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + G + ++ L+ I+ V+ SGLRGRGGAGF Sbjct: 99 LARQQRLTFHRCGVIDPVSVDDYRAHGGYRGLEAALKLDAAGIVAAVRESGLRGRGGAGF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW+ + +D Y+V NADE + GT DR +M +P LIEG IA A GA Sbjct: 159 PAGIKWNTVMLAEAD-QKYVVCNADEGDSGTFADRMMMEGDPFNLIEGMTIAGVATGATR 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ + +L+ A+ +G+LG N G + V GAGAYICGEET+LL Sbjct: 218 GYIYLRSEYPQAFATLKEAIANGVTAGVLGDNILGSGKSFHLDVRLGAGAYICGEETSLL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA G G PT VNNV + VP IL GA Y+ +G + GT Sbjct: 278 ESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPWILENGARAYADYGMGRSLGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ + +E + IT ++IE GG R G + AV GG P + Sbjct: 338 LPIQLAGNIKHGGLIEMAFGITLRQVIEDFGGGTRSGRP-VRAVQVGGPLGAYFP-DHLL 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + +G ++V D + D+ F ESCG+CTPCR G + Sbjct: 396 DTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAAQARFAFEFCATESCGKCTPCRIGATRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M++++ GI + L+ ++ + + ++CA+G P+ I +F Sbjct: 456 ETMDKVIAGIRPDANLKLVEDLCEVMTDGSLCAMGGLTPMPVMSAITHFPEDFRR 510 >gi|94309499|ref|YP_582709.1| respiratory-chain NADH dehydrogenase domain-containing protein [Cupriavidus metallidurans CH34] gi|93353351|gb|ABF07440.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus metallidurans CH34] Length = 518 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 155/414 (37%), Positives = 224/414 (54%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D ++ + + + L I+ EV SGLRGRGGA Sbjct: 98 FLKKQERLTFMRVGITDPLSLDDYIAHEGFVGLTRALSMAPAEIVQEVVDSGLRGRGGAA 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + SD Y+V NADE + GT DR +M +P LIEG VIA A+GA Sbjct: 158 FPTGIKWKTVLGARSD-VKYVVCNADEGDSGTFSDRMVMEDDPFMLIEGMVIAGLAVGAE 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + +AA++ +G LG + G + V GAGAY+CGEETAL Sbjct: 217 QGYIYTRSEYPHAIAATEAAIEIATRAGWLGDDIRGSGRCFQLEVRKGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA +Y FG +RG Sbjct: 277 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAKFYQDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 337 TLPFQLAGNIRQGGLVEKAFGVTLRELMLDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ G+ +G ++V D + D+ K F ESCG+CTPCR G+ Sbjct: 395 FDTPIDYEAYAAFGAVVGHGGIVVFDETVDMAKMARYAMEFCAIESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 455 VEVMDRIIAGDQPVKHVALVRDLCDTMVNGSLCAMGSMTPYPVLSALDEFPEDF 508 >gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] Length = 607 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 160/403 (39%), Positives = 222/403 (55%), Gaps = 10/403 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + SL D + G + + + E G +I EV SGL GRGGA F TG KW Sbjct: 207 LLRRVGVVDPASLDDYRAHGGYTALRRAFELGPAGVIREVTDSGLVGRGGAAFPTGRKWQ 266 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 DRPH+LV NADESEPGT KDR +M +P+ L+E IA +A GAH ++Y+RG Sbjct: 267 ATA-SQPDRPHHLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAGYATGAHKGYLYLRG 325 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L+ AV + A GLLG + GY DI + GAGAYICGEETAL S+EG + Sbjct: 326 EYPRALRRLEHAVAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYR 385 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+G PT NNVE++ V IL GA Y+ G E + G KLF +SG Sbjct: 386 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTLGAPAYAAIGTERSTGPKLFCVSG 445 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E T +L+ L AV+ GG++ + A ++ + ++ Sbjct: 446 SVERPGVYEVPFGATLGDLLALAG-----VRQGLRAVLLGGAAGGFVRADEL-DVPLTFE 499 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G +E G+ LG+ V+ D S + + + R++ F++ ESCGQC PCR GT + R+V Sbjct: 500 GTREAGTTLGSGVVMAFDDSVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIV 559 Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 + G +I LL EV + + +IC LG A ++ I Sbjct: 560 ERTGADAAGDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 602 >gi|167903757|ref|ZP_02490962.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei NCTC 13177] gi|254181073|ref|ZP_04887671.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 1655] gi|184211612|gb|EDU08655.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 1655] Length = 521 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|114571227|ref|YP_757907.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10] gi|114341689|gb|ABI66969.1| formate dehydrogenase beta subunit [Maricaulis maris MCS10] Length = 511 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 213/412 (51%), Gaps = 5/412 (1%) Query: 2 LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L DQ R IF L+ + G + + I+ VK SGLRGRGGAGF Sbjct: 98 LADQQRLIFARCGLDDPLDLAAYQAGGGLAGLSRARALAPGVIVEAVKTSGLRGRGGAGF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW K D YL NADE + GT DR +M +P TLIEG IA+ AIGA Sbjct: 158 PAGIKWETAAKATVD-ATYLCCNADEGDSGTYADRLLMEGDPFTLIEGMCIAARAIGATR 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+R E+ +L+AA+ +GL G DI V GAGAYICGEE+++L Sbjct: 217 GLVYLRSEYPDAIRTLKAAIRIWREAGLF-QGLSDGDGFDIEVRTGAGAYICGEESSMLN 275 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+ R KPP PA GL+G PT VNNV ++A VP IL G Y FG +RGT+ Sbjct: 276 SLEGKRGEVRAKPPIPAISGLFGQPTIVNNVLTLASVPWILEHGGEAYRDFGTGRSRGTQ 335 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 F ++G V +E + ++ LIE GG R G L AV GG L A Sbjct: 336 AFQLAGDVKQGALLELAFGVSLRTLIEDFGGGTRSGRP-LRAVQVGGPLGAYL-ADADLD 393 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDY+ L +G+ LG ++V + + D+ + F ESCG+CTPCR G Sbjct: 394 VAMDYEALAAIGAMLGHGGIVVFNDTVDMARQARFAMEFCAIESCGKCTPCRVGATRGRE 453 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++++ G A + L+ ++ + + ++CA+G P++ I+ F Sbjct: 454 TLDKIIAGEAVADNLALIEDLCELMTDGSLCAMGGLTPMPVRSAIQRFPEDF 505 >gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 620 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 142/420 (33%), Positives = 221/420 (52%), Gaps = 5/420 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R + + + + +S G + ++ + L + +I+ V +GLRGRGG G Sbjct: 130 FYALQRRKVLERCGKVDPRDVDHYISLGGYASLARALSMSPEEVIDWVTRAGLRGRGGGG 189 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G KW+ + S +++ N DE +PG DR +M +PH+++EG +I + A+GA Sbjct: 190 FPAGQKWASC-RSASGPQKFVLANGDEGDPGAFMDRSLMEGDPHSILEGMIIGAHAVGAS 248 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 FIYVR E+ E+L A+ E GLLG D+ + G GA++CGE +AL Sbjct: 249 KGFIYVRDEYPLAVENLAHAIREARRLGLLGRRILGSDLSFDVDICRGGGAFVCGESSAL 308 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG+ G+PR+K GL+ CPT +NNVE+ A VP I+R G Y G +++ G Sbjct: 309 MASIEGRPGEPRVKYIRSTERGLWECPTVLNNVETWANVPIIIREGVDGYRSLGTKDSPG 368 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+FS+ G V VE M T E+I + GG+ G + AV GG S CLP ++ Sbjct: 369 TKVFSLVGKVRRSGLVEVPMGTTLREIIFEIGGGV-MGRNRFKAVQTGGPSGGCLPESKL 427 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L GS +G+ +IVMD + ++ F + ESCG+C PCREG M Sbjct: 428 -DLPVDFDRLTREGSMMGSGGMIVMDHRSCMVDVARYFVKFLEGESCGKCAPCREGLKAM 486 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++E L + ++++L + + +C LG AA P+ +++F E DQ Sbjct: 487 GEILEDLCSRRGRPGDVEMLLFMGNALTDTALCGLGQTAANPVLSTLRHFMEEYREHQDQ 546 >gi|53720139|ref|YP_109125.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia pseudomallei K96243] gi|53724803|ref|YP_102258.1| formate dehydrogenase subunit beta [Burkholderia mallei ATCC 23344] gi|67642932|ref|ZP_00441683.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei GB8 horse 4] gi|76809707|ref|YP_334389.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei 1710b] gi|121600156|ref|YP_993894.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1] gi|124385181|ref|YP_001026955.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC 10229] gi|126450106|ref|YP_001079757.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC 10247] gi|166999708|ref|ZP_02265542.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei PRL-20] gi|167816880|ref|ZP_02448560.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 91] gi|226197836|ref|ZP_03793410.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|254176775|ref|ZP_04883432.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC 10399] gi|254192290|ref|ZP_04898779.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254203943|ref|ZP_04910303.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH] gi|254208923|ref|ZP_04915271.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU] gi|254260630|ref|ZP_04951684.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1710a] gi|254295606|ref|ZP_04963064.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 406e] gi|254360022|ref|ZP_04976292.1| formate dehydrogenase, beta subunit [Burkholderia mallei 2002721280] gi|52210553|emb|CAH36536.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei K96243] gi|52428226|gb|AAU48819.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC 23344] gi|76579160|gb|ABA48635.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei 1710b] gi|121228966|gb|ABM51484.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1] gi|124293201|gb|ABN02470.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei NCTC 10229] gi|126242976|gb|ABO06069.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei NCTC 10247] gi|147745455|gb|EDK52535.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH] gi|147750799|gb|EDK57868.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU] gi|148029262|gb|EDK87167.1| formate dehydrogenase, beta subunit [Burkholderia mallei 2002721280] gi|157805551|gb|EDO82721.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 406e] gi|157987485|gb|EDO95261.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160697816|gb|EDP87786.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC 10399] gi|225930024|gb|EEH26037.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|238524152|gb|EEP87587.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei GB8 horse 4] gi|243064206|gb|EES46392.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia mallei PRL-20] gi|254219319|gb|EET08703.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia pseudomallei 1710a] Length = 521 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP GQ Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPEGQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|225849102|ref|YP_002729266.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643363|gb|ACN98413.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium azorense Az-Fu1] Length = 429 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 166/406 (40%), Positives = 229/406 (56%), Gaps = 16/406 (3%) Query: 20 LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + G + + K L K + I+ V+ S LRGRGGAGF TG KW F P Sbjct: 31 IEEYETTGGYSALKKALTKLTPEDIVIMVEESTLRGRGGAGFPTGRKWRFALANPK--PR 88 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADESEPGT KDR I+ +PH LIEG +I+++A+GA FIY+RGE+ L+ Sbjct: 89 YLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYALGAELGFIYIRGEYPAGYMILED 148 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E G LG N + DI+V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+PA Sbjct: 149 AIEEARKKGYLGKNILGTDFSFDILVYRGAGAYICGEETALIESLEGKRGHPRLRPPYPA 208 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 N GL+G PT VNNVE+++ +P I+ S+Y G G KLF ISG V P E + Sbjct: 209 NEGLFGRPTVVNNVETLSNIPIIVTY-ESYYMSIGPAGYYGPKLFPISGKVKNPGVYEST 267 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M IT ELI+ G AV G V + + MDY GT Sbjct: 268 MDITLRELIDMAGGM--KDGKKFKAVFAGALGVY---SERDLDTPMDYSP----KGFGGT 318 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 IV+ II A+ + F+ HESCG+CTPCR GT ++ ++++ +G A +++I Sbjct: 319 GTTIVLAEDDCIIDALIVIGEFFHHESCGKCTPCRVGTYELLNILKKFQEGTATEKDIKY 378 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 L + +NI +IC LG +A ++ +K FR I+ +C Sbjct: 379 LEHLCENIPVGSICGLGYSAPNAVRDALKKFRDEFYLHIE--KKCP 422 >gi|218532745|ref|YP_002423561.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum CM4] gi|218525048|gb|ACK85633.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum CM4] Length = 519 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 147/416 (35%), Positives = 219/416 (52%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S+ D + G + ++ L+ G + I+ +V+ SGLRGRGGAG Sbjct: 98 FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLGAEGIVAQVRDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW+ + SD Y+V NADE + GT DR +M +P LIEG IA+ A GA Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + ++L+ A+ +G+LG N G + V GAGAYICGEET+L Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA G G PT VNNV + VP IL+ GA Y+ +G + G Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILQHGAKSYAEYGMGRSLG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ +E + IT ++IE GG G + AV GG P + Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFPDD-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + +G ++V D + D+ K F ESCG+CTPCR G Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + M++++ GI + + L+ ++ + + ++CA+G P+ I NF Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510 >gi|239815993|ref|YP_002944903.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110] gi|239802570|gb|ACS19637.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110] Length = 519 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + S++D + + + + L I+ +V SGLRGRGGA F Sbjct: 100 LKKQERLTFARMGVTDPVSVADYEAHEGFAGLRRALTLAPAEIVQQVLDSGLRGRGGAAF 159 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR M +P L+EG IA A GA Sbjct: 160 PAGIKWKTVLAAEAP-QKYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMAIAGIATGATE 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L A+ +G LG + G+ + V AGAY+CGEETALL Sbjct: 219 GYIYVRSEYPHAIATLNEAIRHAEQAGFLGDDILGSGHAFRLTVRKAAGAYVCGEETALL 278 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEG++G R KPP PA GL+G PT +NNV ++A VP IL RGA +Y +G +RGT Sbjct: 279 ESLEGRRGIVRAKPPLPALQGLFGQPTVINNVITLASVPLILARGADFYKHYGMGRSRGT 338 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE++ ++ EL+ GG G + AV GG +P Q Sbjct: 339 LPFQLAGNIRHGGLVEKAFGLSLRELLYDFGGGSASGRP-IKAVQVGGPLGAYVPESQ-W 396 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 397 DLPLDYEAYAAVGAVVGHGGIVVHDDTADMSQLARYAMEFCAIESCGKCTPCRIGSTRGV 456 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++++ + +++ LL ++ + ++CA+G +P+ I ++ Sbjct: 457 EVIDKITSNQNRPQQVILLRDLCDTMLHGSLCAMGGMTPYPVLSAINHYPEDF 509 >gi|39998530|ref|NP_954481.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA] gi|39985477|gb|AAR36831.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA] Length = 423 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 166/409 (40%), Positives = 237/409 (57%), Gaps = 8/409 (1%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + ++ + G + ++K L + + V + LRGRGGAGF TG KWSF+P+ P Sbjct: 16 TFAEYRAEGGFAALEKALSGMSPNDVQQVVIDANLRGRGGAGFPTGKKWSFVPRDIPG-P 74 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ N DE EPGT KDR ++ P++L+EG +A++AIG AFI++R + E+ + Sbjct: 75 RYLICNCDEMEPGTYKDRILLEANPYSLVEGMTLAAYAIGVAHAFIFIRRGYEEAAENCR 134 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E +GLLG N G+ +D+ VH AG YICGEETAL+ +LEG++ PR KPPFP Sbjct: 135 RAIAEAKEAGLLGKNILGSGFSLDLDVHQSAGRYICGEETALMNALEGRRANPRSKPPFP 194 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255 A GL+G PT VNNVE++A +P I+ GA+W+ G R GTKLF +SGHVN E Sbjct: 195 AVKGLWGRPTVVNNVETLANIPAIVANGAAWFKGLARISEAAGTKLFCVSGHVNNAACFE 254 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + ++ E+I+ CGG+ G + A IPGG+S P MD+D + GS L Sbjct: 255 LPLGMSLGEIIDGPCGGMLPGRE-FKACIPGGASTPFFTREH-WNVPMDFDAVARAGSRL 312 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT ++V DR+T ++ A L FY ESCG CTPCREG ++ V+ R+ G ++ I Sbjct: 313 GTGGIVVFDRNTCMVAATLNLVSFYARESCGWCTPCREGLPFVKDVLARIEAGAGREEHI 372 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +L E + + C L A P++GL++ F I E I RC Sbjct: 373 AILREHVQYL-NYAFCPLAPGAMGPVEGLLRLFEDEIREHIV-MGRCPL 419 >gi|307730640|ref|YP_003907864.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003] gi|307585175|gb|ADN58573.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003] Length = 521 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTVRAAKAP-QKYVVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATA 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ + A+G LG + + ++ V GAG+Y+CGEETALL Sbjct: 217 GYIYVRSEYPHSMATLEAAIAKARAAGWLGDSVLGSAHRFELFVAKGAGSYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA VGLYG PT +NNV ++A VP I RGA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ + GG G AV GG LP Q Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G+ +G ++V D ++++ F ESCG+CTPCR G+ + Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLADLAQYAMHFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPYPVLSALDHFPEDF 507 >gi|167570807|ref|ZP_02363681.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis C6786] Length = 522 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 139/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPMSIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ +L A+ +G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GYVYVRSEYPHAIATLDDAIARARDAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ G ++++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIAKIRAGDTSEKQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|114765413|ref|ZP_01444528.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Pelagibaca bermudensis HTCC2601] gi|114542256|gb|EAU45286.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Roseovarius sp. HTCC2601] Length = 506 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 215/413 (52%), Gaps = 7/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q R+ F SL + G + + + + II+EVK SGLRGRGGAGF Sbjct: 91 MKRQTRLTFARCGLTDPLSLEQYEAHGGLAGLRRAIGMTAEAIIDEVKLSGLRGRGGAGF 150 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA A Sbjct: 151 PTGIKWDTVRMAHAD-RKYIVCNADEGDSGTFADRMIMEGDPFCLIEGMAIAGLGCHAEK 209 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 F+Y+R E+ L A++ A+G+LG++ G+ D+ V GAGAY+CGEET+LL Sbjct: 210 GFVYLRSEYPDAIAVLSRAIEIARAAGVLGADVLGSGHAFDMEVRVGAGAYVCGEETSLL 269 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA G +G PT VNNV S+A VP I +GA Y+ FG ++GT Sbjct: 270 NSLEGKRGVVRAKPPLPALEGAFGKPTVVNNVISLATVPVIFEKGAEHYANFGLGRSKGT 329 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V + E + ++ +++E GG G + AV GG L Q Sbjct: 330 IPLQIAGNVRHGGLFETAFGMSLGQIVEDLGGGTASG-RAVKAVQVGGPLGAYLSPDQ-F 387 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 Y+ G+ +G A ++V D S D++ F ESCG+CTPCR G + Sbjct: 388 DTPFGYEEFDGQGALIGHAGLVVFDDSADMLGMARFAMEFCAVESCGKCTPCRIGAVRGV 447 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ G I LL ++ + ++ ++CALG +P+ ++ F Sbjct: 448 ETLDRIAAG--DAEAIPLLIDLCETMQDGSLCALGGFTPYPVMSALRLFPEEF 498 >gi|107022110|ref|YP_620437.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia AU 1054] gi|116689055|ref|YP_834678.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia HI2424] gi|105892299|gb|ABF75464.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia AU 1054] gi|116647144|gb|ABK07785.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia HI2424] Length = 525 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + G + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQARA-AQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ Y VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRHGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|134277692|ref|ZP_01764407.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305] gi|134251342|gb|EBA51421.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305] Length = 521 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F +SG+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLSGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|254252942|ref|ZP_04946260.1| NADH dehydrogenase [Burkholderia dolosa AUO158] gi|124895551|gb|EAY69431.1| NADH dehydrogenase [Burkholderia dolosa AUO158] Length = 524 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLKYDGLAGLKNALALDGDAACEALIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRHATA-KQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA++ +G LG + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIERAREAGWLGERVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ + + +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYAAIDAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ +G +R+I LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRQGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|27904650|ref|NP_777776.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372475|sp|Q89AU2|NUOF_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName: Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1 subunit F gi|27904047|gb|AAO26881.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 444 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 155/399 (38%), Positives = 232/399 (58%), Gaps = 7/399 (1%) Query: 20 LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--KVCSDR 76 + + + + +K++ + +I+ +K SGL+GRGGAGF TG+KWS MP Sbjct: 27 IKEYKRKNGYRAFEKVVNHMTSEDVIDLIKQSGLKGRGGAGFLTGLKWSLMPPLNDEYGY 86 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ ++I++RGE++ L Sbjct: 87 TRYLLCNADEMEPGTYKDRFLMEKVPHQLLEGILISAFALSVTKSYIFLRGEYVNTERIL 146 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + ++ E G LG N +I +H GAG YICGEETAL+ SLEG++ PR KPPF Sbjct: 147 KQSIIEATNYGYLGKNVCGSNLTFEIFIHTGAGRYICGEETALINSLEGRRANPRFKPPF 206 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA VGL+G PT VNNVE+++ VP I G WY G + + GTK+ SG V +P E Sbjct: 207 PAYVGLWGKPTCVNNVETLSNVPAIFLNGVKWYKGLSKSLDTGTKMMGFSGSVKFPGIWE 266 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT E+ E++ GG++ L PGG+S L + MD+ +K++GS L Sbjct: 267 LPFGITAREIFERYAGGMKNN-KKLKVWQPGGASTSFLIDKHL-DVPMDFVNIKKVGSRL 324 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GTA + +D S I+ + + F+ ESCG CTPCR+G W++++++ L + I +I Sbjct: 325 GTALAMAVDDSVSIVSLVRNIEEFFSRESCGFCTPCRDGLPWIVKILKVLEQKIGVPEDI 384 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 ++L ++ + + GRT CA A P++ +K FR E Sbjct: 385 EILEQLCEQLGPGRTFCAHAPGAIEPLKSALKYFRLEFE 423 >gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 632 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 146/430 (33%), Positives = 230/430 (53%), Gaps = 11/430 (2%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q R + + + + ++ G +D K E + + + ASGLRGRGG Sbjct: 140 FYQRQSRYVLKECGFIDPDEIREYVAHGGYDAARKAFTEMDGKAVCDVISASGLRGRGGG 199 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW ++ + Y++ N DE +PG DR +M PH +IEG +IA+ IGA Sbjct: 200 GFPTGRKWE-AARIQDNPKKYVICNGDEGDPGAFMDRSVMEGNPHCIIEGMMIAARGIGA 258 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + ++ AV E A+G LG + G + V GAGA++CGEETA Sbjct: 259 DEGYIYVRAEYPLAVKRMRHAVAEAEAAGYLGDDVFGSGQSFRLEVMEGAGAFVCGEETA 318 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G P KPPFPA GL+ PT +NNVE++A VP I+ +GA Y G E + Sbjct: 319 LMASIEGRRGMPAPKPPFPAQKGLWRKPTIINNVETLAQVPRIIGKGAEAYRSLGTEKSP 378 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN-----LLAVIPGGSSVPC 292 GTK F+++GHV +E T E++ GG+ N AV GG S C Sbjct: 379 GTKTFALTGHVCNTGLIEVPFGATLREVVINIGGGVTDDRGNIDKTGFKAVQIGGPSGGC 438 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 + +D+D L+ +G+ +G+ ++VM++ T ++ F + ESCG+C CR Sbjct: 439 -LTPDLLDLPLDFDSLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCR 497 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGT ++ +++ +++G ++LL + ++ ++C LG A P+ +K+FR Sbjct: 498 EGTKQLLALLDDVIEGRGTAETLELLETLGHAVQIGSLCGLGKTAPNPVLSTLKHFRKEY 557 Query: 413 EERIDQYHRC 422 EE + + RC Sbjct: 558 EEHVFE-KRC 566 >gi|167895370|ref|ZP_02482772.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 7894] gi|167919995|ref|ZP_02507086.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei BCC215] Length = 521 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|253698812|ref|YP_003020001.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251773662|gb|ACT16243.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 421 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 160/408 (39%), Positives = 237/408 (58%), Gaps = 8/408 (1%) Query: 21 SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + + G ++ + + + + V SGLRGRGGAGF TG KWSF+P+ P + Sbjct: 18 KEYRAEGGFEALKRAITGMTPAEVQQTVIDSGLRGRGGAGFPTGKKWSFVPRDLPG-PRW 76 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 ++ N DE EPGT KDR ++ H P++LIEG +A +A+G FI++R + + E+L A Sbjct: 77 IICNCDEMEPGTYKDRVLLEHNPYSLIEGMTLACYALGVRHGFIFIRKGYEQAAENLARA 136 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + E G LG + +DI +H AG YICGEETAL+ +LEGK+ PR KPPFPA Sbjct: 137 IAEAKKEGFLGERILGSEHSIDIDLHLSAGRYICGEETALINALEGKRPNPRQKPPFPAV 196 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNVE++A +P I+ RGA+W+ G G+KLF +SG V VE Sbjct: 197 KGLWGGPTVVNNVETLANIPGIVARGAAWFKGLAINPEGAGSKLFCVSGSVKDRACVELP 256 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + I ++I+ CGG+R G A IPGG+S L A + MDYD + + GS LG+ Sbjct: 257 IGIPLADIIDGPCGGMRLG-KKFKACIPGGASTQFLTAEHL-KVPMDYDPVAKAGSRLGS 314 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 +IV D S +++A L F+ ESCG CTPCREG ++ ++ R+ G ++ +I + Sbjct: 315 GGIIVFDESHCLVEATLNLITFFARESCGWCTPCREGLPYVKEILTRIETGYGKEDDIAI 374 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 L E + + + CAL A P++GL+++F + E I + +C + Sbjct: 375 LREHIRYL-NYSFCALAPGAMAPLEGLLRHFEDEVREHIVK-KKCPLK 420 >gi|254195650|ref|ZP_04902077.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13] gi|169652396|gb|EDS85089.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13] Length = 521 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|290956204|ref|YP_003487386.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22] gi|260645730|emb|CBG68821.1| putative respiratory chain oxidoreductase [Streptomyces scabiei 87.22] Length = 610 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 154/403 (38%), Positives = 221/403 (54%), Gaps = 10/403 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + + SL D + G + + + G +I EV SGL GRGGA F TG KW Sbjct: 210 LLSRVGVVDPSSLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQ 269 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 D+PHYLV NADESEPGT KDR ++ +P +L+E IA +A GAH ++Y+RG Sbjct: 270 ATA-SQPDQPHYLVCNADESEPGTFKDRVLLEGDPFSLVEAMTIAGYATGAHRGYLYLRG 328 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L+ A+ + A GLLG + GY DI + GAGAYICGEETAL S+EG + Sbjct: 329 EYPRALRRLENAIAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYR 388 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+G PT NNVE++ V IL GA Y+ G + G KLF +SG Sbjct: 389 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILALGAPAYASIGTARSTGPKLFCVSG 448 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V+ P E +L+ D L AV+ GG++ + ++ + ++ Sbjct: 449 SVDRPGIYELPFGAALGDLLTLAG-----VRDRLRAVLLGGAAGGFVRPDEL-DIPLTFE 502 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G +E G+ LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ Sbjct: 503 GTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIA 562 Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 + G A +I LL EV + + +IC LG A ++ I Sbjct: 563 ERTGAAAAGDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 605 >gi|170732343|ref|YP_001764290.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3] gi|254246011|ref|ZP_04939332.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184] gi|124870787|gb|EAY62503.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184] gi|169815585|gb|ACA90168.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3] Length = 525 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + G + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQARA-AQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIVRIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|298507474|gb|ADI86197.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400] Length = 423 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 166/409 (40%), Positives = 237/409 (57%), Gaps = 8/409 (1%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + ++ + G + ++K L + + V + LRGRGGAGF TG KWSF+P+ P Sbjct: 16 TFAEYRAEGGFAALEKALSGMSPNDVQQVVIDANLRGRGGAGFPTGKKWSFVPRDIPG-P 74 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ N DE EPGT KDR ++ P++L+EG +A++AIG AFI++R + E+ + Sbjct: 75 RYLICNCDEMEPGTYKDRILLEANPYSLVEGMTLAAYAIGVAHAFIFIRRGYEEAAENCR 134 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E +GLLG N G+ +D+ VH AG YICGEETAL+ +LEG++ PR KPPFP Sbjct: 135 RAIAEAKEAGLLGKNILGSGFSLDLDVHQSAGRYICGEETALMNALEGRRANPRSKPPFP 194 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255 A GL+G PT VNNVE++A +P I+ GA+W+ G R GTKLF +SGHVN E Sbjct: 195 AVKGLWGRPTVVNNVETLANIPAIVANGATWFKGLARISEAAGTKLFCVSGHVNNAACFE 254 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + ++ E+I+ CGG+ G + A IPGG+S P MD+D + GS L Sbjct: 255 LPLGMSLGEIIDGPCGGMLPGRE-FKACIPGGASTPFFTREH-WNVPMDFDAVARAGSRL 312 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT ++V DR+T ++ A L FY ESCG CTPCREG ++ V+ R+ G ++ I Sbjct: 313 GTGGIVVFDRNTCMVAATLNLVSFYARESCGWCTPCREGLPFVKDVLARIEAGAGREEHI 372 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +L E + + C L A P++GL++ F I E I H C Sbjct: 373 AILREHVQYL-NYAFCPLAPGAMGPVEGLLRLFEDEIREHIVMGH-CPL 419 >gi|322417695|ref|YP_004196918.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320124082|gb|ADW11642.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 420 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 166/410 (40%), Positives = 236/410 (57%), Gaps = 8/410 (1%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + G ++ + K + + V SGLRGRGGAGF TG KWSF+P+ P Sbjct: 16 TFDEYREEGGFEALKKAISGMTPAEVQQTVIDSGLRGRGGAGFPTGKKWSFVPRDLPG-P 74 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +L+ N DE EPGT KDR ++ H P++LIEG +AS+A+G AFI++R + + E+L Sbjct: 75 RWLICNCDEMEPGTYKDRVLLEHNPYSLIEGMTLASYALGVRHAFIFIRKGYEKAAENLA 134 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + E SGLLG + +D+ +H AG YICGEETAL+ +LEGK+ PR KPPFP Sbjct: 135 RGIAEAKKSGLLGERILGTEHSIDLDLHLSAGRYICGEETALINALEGKRPNPRQKPPFP 194 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSISGHVNYPCTVE 255 A GL+ PT VNNVE++A +P+I+ GA+W+ G GTKLF +SG V VE Sbjct: 195 AVKGLWQGPTVVNNVETLANIPSIIANGAAWFKGLALTPEGAGTKLFCVSGSVQNRVCVE 254 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + T E+IE CGG+R A IPGG+S L QM MDYD + + GS L Sbjct: 255 LPIGTTLGEIIEGSCGGMR-DGKKFKACIPGGASTQFLTPDQM-KVPMDYDSVAKAGSRL 312 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ +IV D +++A L F+ ESCG CTPCREG ++ ++ R+ G ++ +I Sbjct: 313 GSGGIIVFDEGHCLVEATLNLITFFARESCGWCTPCREGLPYVQEILTRIENGRGEEEDI 372 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +L E K + T CAL A P+ GL+++F + E I + +C + Sbjct: 373 GILREHVKYL-NYTFCALAPGAMAPLDGLLRDFEDEVREHIVK-KKCPLK 420 >gi|163782978|ref|ZP_02177973.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] gi|159881658|gb|EDP75167.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] Length = 425 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 160/399 (40%), Positives = 230/399 (57%), Gaps = 11/399 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 S+ + + G + ++K L + II+ V+ S LRGRGGAGF TG KW F + + P Sbjct: 29 HSIEEYLKEGGYQALEKALNMSPEEIIDWVEKSTLRGRGGAGFPTGTKWKFAVQNPA--P 86 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y + NADESEPGT KDR ++ +PH L+EG +I+S+A+GA+ AFIY+RGE+ L Sbjct: 87 RYFICNADESEPGTFKDRILIERDPHLLLEGMIISSYAVGANEAFIYIRGEYPAGYYILL 146 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E G LG + G+D++I V G GAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 147 DAIEEAKEKGFLGKDILGSGFDLEIYVARGGGAYICGEETALIESLEGKRGHPRLKPPYP 206 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 VGL+G PT VNNVE+I VP I+ G Y G + G KLF +SG V P E Sbjct: 207 VQVGLFGRPTVVNNVETICNVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYEL 266 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M+ T E+I K+ GG G ++ C ++ MDY G Sbjct: 267 PMNTTLREVIYKYAGGTVGNKKVKAVFS---GALDCFAGEEL-DMPMDYSPF----GFGG 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T V+V+ DI++A +++ FY+HE+CGQCTPCR G +++R+ +G A +++ + Sbjct: 319 TGTVMVLTEDDDIVEACLQVAKFYEHETCGQCTPCRVGCHEQAVLLDRIYRGEASEKDWE 378 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 +++ I+ +IC LG A I+ ++ F E Sbjct: 379 GFVFINRYIQPTSICGLGAVAGRLIKQAMEKFPEEFEAY 417 >gi|237813331|ref|YP_002897782.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei MSHR346] gi|237505526|gb|ACQ97844.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia pseudomallei MSHR346] Length = 521 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|123500998|ref|XP_001327980.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein [Trichomonas vaginalis G3] gi|121910917|gb|EAY15757.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein [Trichomonas vaginalis G3] Length = 425 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 188/415 (45%), Positives = 274/415 (66%), Gaps = 2/415 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +DRIFTN+ G+ L M RG W++ KI+ G+ +I++EV+ S LRGR GAG Sbjct: 10 MLNKRDRIFTNINGVDESDLQSCMKRGDWNDTQKIIANGKKYILDEVRKSELRGRSGAGL 69 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 T KW + PHYL +N +ESEPGTCKDR I+++EP +IEG +AS+A+ H Sbjct: 70 LTYKKWEEILTSKQ-LPHYLCINGNESEPGTCKDRQILQNEPQKIIEGAFLASYALDVHR 128 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVRG + +E + LQ A+DE + L+G N+K G+D +I VH GAGAY+CGE+T L+ Sbjct: 129 CYVYVRGHYTKEAKRLQLAIDEAKKANLIGKNNKFGWDFEINVHPGAGAYVCGEQTGLMT 188 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG G PR KPP P GL+ CPT V+NVE+I+ + +I RRG W+S G +RG K Sbjct: 189 SLEGNPGTPRQKPPQPFEKGLFQCPTVVDNVETISTISSICRRGGKWFSSLGIPGSRGPK 248 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 ++ ISGHVN PC VEE++ ++ ELI+ H G+RGGWDNL +IPGG+S P + Q + Sbjct: 249 IYQISGHVNRPCIVEETLGMSLKELIDVHGSGVRGGWDNLQCIIPGGTSCPPITKEQAKN 308 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 AI+ +D + ++GSGLGT +++V+D + DI++ R++ FYK E CGQC C EGT M Sbjct: 309 AILGFDEMSKIGSGLGTGSLVVIDNTADIVEVYRRIANFYKDECCGQCKQCVEGTETMAE 368 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 + +++ +G K ++ L EV+ ++ + IC+ A+ PI+G +K F+ + ER Sbjct: 369 IFDKIARGKGTKDDVKHLEEVAFGMK-KYICSFSVGASDPIRGFLKVFKNKLLER 422 >gi|167581037|ref|ZP_02373911.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis TXDOH] Length = 522 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLKNALALDGATACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRDAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPVPALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ G ++++ LL E+ + ++CA+G +P+ + +F Sbjct: 456 ETIAKIRAGDTSEKQVRLLRELCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|167739672|ref|ZP_02412446.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 14] Length = 521 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+ PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP GQ Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPEGQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|28207554|gb|AAO32145.1| NAD-linked formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] Length = 519 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 145/416 (34%), Positives = 215/416 (51%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S+ D + G + ++ L+ I+ +V+ SGLRGRGGAG Sbjct: 98 FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW+ + SD Y+V NADE + GT DR +M +P LIEG IA+ A GA Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + ++L+ A+ +G+LG N G + V GAGAYICGEET+L Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA G G PT VNNV + VP IL GA Y+ +G + G Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ +E + IT ++IE GG + AV GG P + Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASDRP-VRAVQVGGPLGAYFPDD-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + +G ++V D + D+ K F ESCG+CTPCR G Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + M++++ GI + + L+ ++ + + ++CA+G P+ I NF Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510 >gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] Length = 721 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 146/418 (34%), Positives = 222/418 (53%), Gaps = 9/418 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G W + + I+ +V SGLRGRGGA F Sbjct: 295 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 354 Query: 61 STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 G+KW + S Y+ NADE + GT DR +M +P LIEG IA A+G Sbjct: 355 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 414 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ L A+ A+G LG+N + G + V GAG+Y+CGEET Sbjct: 415 ATQGYIYVRSEYPHAIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 474 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 A+LES+EGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y G+G + Sbjct: 475 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 534 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 RGT F ++G++ VE++ +T EL+E GG G + A+ GG + Sbjct: 535 RGTLPFQLAGNIARGGLVEKAFGLTLRELVEDFGGGTASGRP-IKAIQVGGPLGSYVAPE 593 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +DY+ G+ +G ++V D S D+ + F ESCG+CTPCR G+ Sbjct: 594 NWDD-PLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 652 Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V++R+ + G + LL + ++ ++CA+G +P++ ++++ Sbjct: 653 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHYPADF 710 >gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 574 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 183/411 (44%), Positives = 253/411 (61%), Gaps = 12/411 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N +L+ + G + + K + I+ EVK + LRGRGGAGF G+KW Sbjct: 176 LLKNRGVKDATALAVAKGNGAYQALAKAGTMKPEEILEEVKKANLRGRGGAGFPAGVKWG 235 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F+PK D+P YL+ NADE EPGT KDR IM ++PH LIEG IA+ AIGA AFIY+RG Sbjct: 236 FIPKDT-DKPVYLICNADEGEPGTYKDRQIMEYDPHLLIEGMAIAARAIGARQAFIYIRG 294 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 EF + L+ A+ E A G L +DIIVH GAGAY+CGEETAL+ES+EGK+G Sbjct: 295 EFAWIADILEKAIGEAKADGQLSE-------LDIIVHRGAGAYVCGEETALIESIEGKRG 347 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 QPR++PPFPA GLYGCPT VNNVE++A VP I+ +GA + +G ENN G KLF ISG Sbjct: 348 QPRIRPPFPAVEGLYGCPTIVNNVETLASVPFIIEKGAEAFKQWGFENNYGFKLFGISGC 407 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 VN P E + ++F+EL+E G L A I GG SV L A +++ MDYD Sbjct: 408 VNKPGVYEYPLGVSFNELMEAAGG----VKGKLKAAIVGGLSVAILKAEELQDLTMDYDS 463 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + G+GLG+ ++V+ I + R FY HESCG+C PCREG+ +++++ +L+ Sbjct: 464 CAKHGTGLGSGGIMVISEDFSIPELALRTIKFYAHESCGKCVPCREGSYTLVKILHKLLS 523 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 G + +I+ + + + G T+C G+A A PIQ +++ FR + I + Sbjct: 524 GQGEAADIEKILGICNTVRGLTLCPTGEAFAVPIQAMVEKFRSEFDALIKK 574 >gi|170693702|ref|ZP_02884860.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M] gi|170141484|gb|EDT09654.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M] Length = 521 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 151/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S D ++ G + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSTDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTVRAAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATA 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ + A+G LG + + ++ V GAG+Y+CGEETALL Sbjct: 217 GYIYVRSEYPHSIATLEAAIAKARAAGWLGDSVLGSAHRFELFVAKGAGSYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA VGLYG PT +NNV ++A VP I RGA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T ELI + GG G AV GG LP Q Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELIYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ + Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPYPVMSALDHFPEDF 507 >gi|222054365|ref|YP_002536727.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221563654|gb|ACM19626.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 420 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 166/424 (39%), Positives = 245/424 (57%), Gaps = 8/424 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTG 63 + +F + + + ++ G ++ + K L D + V SGLRGRGGAGF TG Sbjct: 2 EQVLFRHNRPGRAATFAEYCGDGGFEALKKALGGLSPDDVQQMVVDSGLRGRGGAGFPTG 61 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 KWSF+P+ P +L+ N DE EPGT KDR ++ P++LIEG ++A +AIG H AFI Sbjct: 62 KKWSFVPRNLPG-PRWLICNCDEMEPGTYKDRVLLEANPYSLIEGILLACYAIGVHHAFI 120 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 ++R + +L+ + E + +G N G+ I VH AG YICGEETAL+ +L Sbjct: 121 FIRRGYETAAANLRHGIAEADKAEFIGDNIMGSGFSCAIDVHVSAGRYICGEETALMNAL 180 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKL 241 EGK+ PR KPPFPA GL+G PT VNNVE+++ +P I+ +G++W+ G + GTKL Sbjct: 181 EGKRANPRSKPPFPAVKGLWGGPTVVNNVETLSNIPAIVAKGSAWFKGLAKVPEAAGTKL 240 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 F ISGHV VE M +T E+I+ CGG+ G A IPGG+S P A Sbjct: 241 FCISGHVRNTVCVELPMGMTLGEIIDGPCGGMLPGRK-FKACIPGGASTPFFTADHFA-V 298 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 MD+D + + GS LGT ++V D +T ++ L F+ ESCG CTPCREG ++ V Sbjct: 299 PMDFDAVAKAGSRLGTGGIVVFDENTCMVGVTLNLIRFFARESCGWCTPCREGLPFVHEV 358 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + R+ +G ++ ++++L E + + CAL A P++GL++ F+ I E I + Sbjct: 359 LTRMEQGRGREEDLEILSEHVHYL-NYSFCALAPGAMGPVEGLLRLFKDEIREHIRKNG- 416 Query: 422 CNFQ 425 C F+ Sbjct: 417 CPFK 420 >gi|188997422|ref|YP_001931673.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] gi|188932489|gb|ACD67119.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1] Length = 427 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 167/418 (39%), Positives = 234/418 (55%), Gaps = 16/418 (3%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + + + + ++ G + + K L + + II V+ S LRGRGGAGF TG KW Sbjct: 19 LLRRCKEPRTVDIEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F P YLV NADESEPGT KDR I+ +PH LIEG +I+++AIGA FIY+R Sbjct: 79 RFAISNPK--PRYLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIR 136 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ + L+ A+ E G LG N + DI V+ GAGAYICGEETAL+ESLEGK Sbjct: 137 GEYPAGAKILENAIKEARERGFLGKNILGTDFSFDISVYRGAGAYICGEETALIESLEGK 196 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PRLKPP+P + GL+G PT VNNVE++A +P I+ S+Y G G KLF IS Sbjct: 197 RGHPRLKPPYPVSEGLFGKPTVVNNVETLANIPIIITY-ESYYMNIGPAGYYGPKLFPIS 255 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN P E +M IT ELI GG++ AV G V + + MDY Sbjct: 256 GKVNKPGVYELTMDITLRELI-DIAGGMK-DGKKFKAVFAGALGVY---SERDLDIPMDY 310 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 GT IV+ II ++ ++ F+ HESCG+CTPCR GT ++ ++++ Sbjct: 311 SP----KGFGGTGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGTYELLNILKKF 366 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +GIA ++++ L + +NI +IC LG +A + ++ F+ I+ +C Sbjct: 367 QEGIATEKDLQYLEHLGRNIPVGSICGLGYSAPNALMDALRKFKDEFIAHIN--KQCP 422 >gi|237755575|ref|ZP_04584192.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237692274|gb|EEP61265.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 427 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 166/418 (39%), Positives = 233/418 (55%), Gaps = 16/418 (3%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66 + + + + ++ G + + K L + + II V+ S LRGRGGAGF TG KW Sbjct: 19 LLRRCKEPRTVDIEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKW 78 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 F P YLV NADESEPGT KDR I+ +PH LIEG +I+++AIGA FIY+R Sbjct: 79 RFAVSNSK--PRYLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIR 136 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ + L+ A+ E G LG N + DI V+ GAGAYICGEETAL+ESLEGK Sbjct: 137 GEYPAGAKILENAIKEARERGFLGKNILGTDFSFDISVYRGAGAYICGEETALIESLEGK 196 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PRLKPP+P + GL+G PT VNNVE++A +P I+ S+Y G G KLF IS Sbjct: 197 RGHPRLKPPYPVSEGLFGKPTVVNNVETLANIPIIVTY-ESYYMNIGPAGYYGPKLFPIS 255 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G VN P E +M IT ELI GG++ AV G L + + MDY Sbjct: 256 GKVNKPGVYELTMDITLRELI-DIAGGMK-DGKKFKAVFAGALG---LYSERDLDIPMDY 310 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 GT IV+ II ++ ++ F+ HESCG+CTPCR G+ ++ ++++ Sbjct: 311 SP----KGFGGTGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGSYELLNILKKF 366 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 +G A ++++ L + +NI +IC LG +A + +K F+ I+ +C Sbjct: 367 QEGTATEKDLQYLEHLGRNIPVGSICGLGYSAPNALMDALKKFKDEFIAHIN--KQCP 422 >gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 656 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 154/401 (38%), Positives = 221/401 (55%), Gaps = 5/401 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + SL D + G + + + L G +I EV SGL GRGGA F TG KW Sbjct: 234 LLRRIGTVDPLSLDDYRAAGGYAALRRALRLGPAGVIREVSDSGLVGRGGAAFPTGRKWQ 293 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + D PHYLV NADESEPGT KDR +M +P +++E IA +A+GA ++Y+RG Sbjct: 294 ATAQQP-DGPHYLVCNADESEPGTFKDRVLMEGDPFSVVEAMTIAGYAVGARTGYLYIRG 352 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L+ AV GLLG + G+ DI + GAGAYICGEETA+ S+EG++ Sbjct: 353 EYPRALRHLENAVALARGRGLLGPDILGSGFAFDIEIRRGAGAYICGEETAIFGSIEGQR 412 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+G PT VNNVE++ V +L G Y+ G + G KLF +SG Sbjct: 413 GEPRSKPPFPVEKGLFGKPTAVNNVETLVNVLPVLLMGGPAYAAVGTGQSTGPKLFCLSG 472 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E T +LIE G G + AV+ GG++ + ++ + ++ Sbjct: 473 GVRRPGLYELPFGATLRDLIEAAGGMPEG--RTIQAVLLGGAAGTFVRGDEL-DIPLTFE 529 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G + G+ LG+ V+V+D + D++ + R++ F++ ESCGQC PCR GT + R+ Sbjct: 530 GARAAGTSLGSGVVLVLDDTADLVATLVRVAAFFRDESCGQCVPCRVGTVRQEESLLRIR 589 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 G E+ LL EV + +IC LG A ++ I Sbjct: 590 AGGDAAAEVPLLREVGLAMRDASICGLGQTAWNAVESAIDR 630 >gi|167586515|ref|ZP_02378903.1| NADH dehydrogenase (quinone) [Burkholderia ubonensis Bu] Length = 525 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + L D + + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLRHDGLAGLKNALALDGDAACDALIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRHASA-NQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG++ + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIARARDAGWLGASVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y FG +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDFGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ +G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRRGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|163853801|ref|YP_001641844.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1] gi|163665406|gb|ABY32773.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1] Length = 519 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 147/416 (35%), Positives = 218/416 (52%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S+ D + G + ++ L+ G + I+ +V+ SGLRGRGGAG Sbjct: 98 FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEVALKLGAEGIVAQVRDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW+ + SD Y+V NADE + GT DR +M +P LIEG IA+ A GA Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + ++L+ A+ +G+LG N G + V GAGAYICGEET+L Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA G G PT VNNV + VP IL GA Y+ +G + G Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ +E + IT ++IE GG G + AV GG P + Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFPDD-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + +G ++V D + D+ K F ESCG+CTPCR G Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + M++++ GI + + L+ ++ + + ++CA+G P+ I NF Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510 >gi|73540324|ref|YP_294844.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72117737|gb|AAZ60000.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 521 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 155/414 (37%), Positives = 219/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 101 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMEPAAIVQEVTDSGLRGRGGAA 160 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S Y+V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 161 FPTGIKWKTVLGAKS-AVKYIVCNADEGDSGTFSDRMVMEDDPFVLIEGMTIAGLAVGAE 219 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L AA+ A+G LG + G + V GAGAY+CGEETAL Sbjct: 220 YGYIYCRSEYPHAIAVLNAAIATATAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 279 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA GL+G PT +NNV S+A VP IL RGA Y FG +RG Sbjct: 280 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAQHYRDFGMGRSRG 339 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 340 TLPFQLAGNIKQGGLVEKAFGVTLRELLYDYGGGTRSG-RAVRAVQVGGPLGAYLPEAR- 397 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ G +G ++V D + D+ + F ESCG+CTPCR G+ Sbjct: 398 FDVPMDYEAYAAFGGVVGHGGIVVFDETVDMARQARYAMEFCAIESCGKCTPCRIGSTRG 457 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 458 VEVMDRIIAGNEPVKHVKLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 511 >gi|215694413|dbj|BAG89406.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704716|dbj|BAG94744.1| unnamed protein product [Oryza sativa Japonica Group] Length = 411 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 229/336 (68%), Positives = 267/336 (79%), Gaps = 1/336 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L +M RG W ++ KG DWI+NE+K SGLRGRGGAGF Sbjct: 76 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +G+KWSFMPKV RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA + A A Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE++ ER +L A +E YA+GLLG N+ GYD D+ +H GAGAYICGEETALLE Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+NN GTK Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SGHVN PCTVEE MSI ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 +MDYD LK + SGLGTAAVIVMD+STD++ AI RL Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARL 411 >gi|167837458|ref|ZP_02464341.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis MSMB43] Length = 522 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPVSIDDYVAHGGLAGLKNALALDGAVACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVREAAA-AQKYIVCNADEGDSGTFSDRLLMESDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATVPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ G ++++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIAKIRAGDTSEKQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|240141253|ref|YP_002965733.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta subunit [Methylobacterium extorquens AM1] gi|240011230|gb|ACS42456.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta subunit [Methylobacterium extorquens AM1] Length = 519 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 146/416 (35%), Positives = 216/416 (51%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S+ D + G + ++ L+ I+ +V+ SGLRGRGGAG Sbjct: 98 FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW+ + SD Y+V NADE + GT DR +M +P LIEG IA+ A GA Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + ++L+ A+ +G+LG N G + V GAGAYICGEET+L Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA G G PT VNNV + VP IL GA Y+ +G + G Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ +E + IT ++IE GG G + AV GG P + Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFPDD-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + +G ++V D + D+ K F ESCG+CTPCR G Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + M++++ GI + + L+ ++ + + ++CA+G P+ I NF Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510 >gi|167619115|ref|ZP_02387746.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis Bt4] Length = 522 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRDAAA-AQKYIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARSRAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPVPALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ G ++++ LL E+ + ++CA+G +P+ + +F Sbjct: 456 ETIAKIRAGDTSEKQVRLLRELCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|187924996|ref|YP_001896638.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN] gi|187716190|gb|ACD17414.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN] Length = 520 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L+AA+ + A+G LG + ++ V GAGAY+CGEETALL Sbjct: 217 GHIYVRSEYPHSIATLEAAIAKARAAGWLGDRVLGSAHRFELFVAKGAGAYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA VGL+G PT +NNV ++A VP I RGA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ + GG G AV GG LP Q Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ + Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 507 >gi|149203817|ref|ZP_01880786.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035] gi|149142934|gb|EDM30976.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035] Length = 502 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 214/413 (51%), Gaps = 7/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q R+ F + L D + G + + + I+ EV SGLRGRGGAGF Sbjct: 87 MKRQTRLTFARTGVIDPLDLEDYAAHGGLVGLRRAIAMDAHDIVAEVTKSGLRGRGGAGF 146 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + + Y+V NADE + GT DR IM +P +L+EG IA +GA Sbjct: 147 PTGIKWKTVQEAQAP-QKYIVCNADEGDSGTFADRMIMEGDPFSLVEGMAIAGIGVGATR 205 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ + AV+ +G+LGS+ G+ D+ + GAGAY+CGEETALL Sbjct: 206 GYVYLRSEYPDAIAVMCRAVEIARGAGVLGSDVLGSGHAFDMEIRVGAGAYVCGEETALL 265 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA G G PT VNNV S+A VP I RGA Y+ FG +RGT Sbjct: 266 NSLEGKRGVVRAKPPLPALEGFLGRPTVVNNVISLATVPVIFERGAQHYADFGLGRSRGT 325 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V E + IT E++ GG + AV GG +P Sbjct: 326 VTLQIAGNVARGGLFETAFGITLGEVVNDLGGGT-MTGRPVKAVQVGGPLGAYIPVSN-F 383 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A + Y+ L G LG A ++V D S D+++ F ESCG+CTPCR G + Sbjct: 384 DAPLGYEELDAKGGLLGHAGLVVFDDSADMLQMARFAMEFCAVESCGKCTPCRIGAVRGV 443 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ G I LL ++ + ++ ++CALG +P+ + +F Sbjct: 444 ETIDRIAAGDGTA--IPLLTDLCETMKDGSLCALGGFTPFPVMSALTHFPNDF 494 >gi|84686201|ref|ZP_01014096.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Maritimibacter alkaliphilus HTCC2654] gi|84665728|gb|EAQ12203.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacterales bacterium HTCC2654] Length = 499 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 146/414 (35%), Positives = 215/414 (51%), Gaps = 7/414 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +Q R+ F + L + G +++ L+ ++ E KASGLRGRGGAG Sbjct: 83 FFANQTRLTFQRCGVIDPLDLDAYRAHGGLTGLERALDMDGLGVVEEAKASGLRGRGGAG 142 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + K +D Y+V NADE + GT DR IM +P +LIEG IA +GA Sbjct: 143 FPTGIKWETVAKAEAD-QKYIVCNADEGDSGTFADRMIMEGDPFSLIEGMAIAGVGVGAT 201 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ ++AAV+ A+GLLG++ G D+ + GAGAY+CGEET+L Sbjct: 202 KGYVYLRSEYPDAIRVMKAAVEVARANGLLGASLLGKGPAFDMEIRVGAGAYVCGEETSL 261 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA G G PT VNNV S+A +P I +GA+ Y+ FG ++G Sbjct: 262 LNSLEGKRGVVRAKPPLPALEGFLGKPTVVNNVISLATIPVIFEKGAAHYANFGLGRSKG 321 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V Y E + + E++ GG R G + AV GG A Sbjct: 322 TIPLQIAGNVKYGGLYEIAFGLPLGEIVNDIAGGTRSGQP-VKAVQVGGPLGAYF-APHQ 379 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 Y+ G +G A + V D + D++ F ESCG+CTPCR G Sbjct: 380 FDTPFGYEEFDGAGGLIGHAGLTVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRG 439 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++R+ G +E+ L ++ + + ++CALG +P+ + F Sbjct: 440 VETIDRIAAGDMAAKEL--LTDLCETMTDGSLCALGGFTPYPVMSAMTLFPEDF 491 >gi|323526974|ref|YP_004229127.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001] gi|323383976|gb|ADX56067.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001] Length = 521 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 150/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTV-RAARAAQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGASA 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ + A+G LG + ++ V GAG+Y+CGEETALL Sbjct: 217 GYIYVRSEYPHSIATLEAAIAKARAAGWLGDSVLGCPLRFELFVAKGAGSYVCGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA VGLYG PT +NNV ++A VP I RGA++Y FG +RGT Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G AV GG LP Q Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELLYDFGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ + Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGV 454 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 EVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPYPVLSALDHFPEDF 507 >gi|307822805|ref|ZP_07653036.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum SV96] gi|307736409|gb|EFO07255.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum SV96] Length = 423 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 172/414 (41%), Positives = 248/414 (59%), Gaps = 13/414 (3%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGM 64 DR FT +L+D S G + + K L + + + + VK +GLRGRGGAGF TG+ Sbjct: 15 DRAFT--------TLADYESTGGYQGLRKALAELQPKDVQQWVKDAGLRGRGGAGFGTGL 66 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KWS +P + YLV NADE EPGT KDR ++ +PH LIEG +IA++AI A A+I+ Sbjct: 67 KWSLVPLDDLSQTRYLVANADEMEPGTFKDRMLLEQDPHQLIEGMIIAAYAIQAQKAYIF 126 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 +RGE+ + L+ A+ E + G LG + ++++I++H GAG YICGEETALL +LE Sbjct: 127 LRGEYHVAKFRLEQALLEAKSKGYLGEHILNSAFNLEIVLHTGAGRYICGEETALLNALE 186 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 GK+ PR KPPFP GL+G PT VNNVE++ VP IL G WY G R ++GTKLF Sbjct: 187 GKRATPRAKPPFPLVSGLWGKPTVVNNVETLCNVPHILHYGVEWYQGLARGVDKGTKLFG 246 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 G V +P E M E+IE+H GG+R G+ L +PGG+S L + +M Sbjct: 247 AGGRVKHPGLWELPMGTPIREIIEQHAGGMRDGYK-LRGFLPGGASTDFLLPEHL-DVVM 304 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D++ + + GS +GT +IV+D T ++ + L F+ ESCG CTPCR+G W + +++ Sbjct: 305 DFEAVAKAGSRMGTGVIIVLDDKTCPVRMVLNLEQFFAQESCGWCTPCRDGLPWTVTLLK 364 Query: 364 RLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ G + ++D L +++ + G T CAL A P+Q +K FR E I Sbjct: 365 DIIAGKGRIEDLDTLAGLTRMLGPGNTFCALAPGAVEPLQSALKYFRADFERYI 418 >gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] Length = 714 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 145/418 (34%), Positives = 222/418 (53%), Gaps = 9/418 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + SL D + G W + + I+ +V SGLRGRGGA F Sbjct: 288 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 347 Query: 61 STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117 G+KW + S Y+ NADE + GT DR +M +P LIEG IA A+G Sbjct: 348 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 407 Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176 A +IYVR E+ L A+ A+G LG+N + G + V GAG+Y+CGEET Sbjct: 408 ATQGYIYVRSEYPHSIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 467 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 A+LES+EGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y G+G + Sbjct: 468 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 527 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 RGT F ++G++ VE++ +T EL++ GG G + A+ GG + Sbjct: 528 RGTLPFQLAGNIARGGLVEKAFGLTLRELVQDFGGGTASGRP-VKAIQVGGPLGSYVAPE 586 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +DY+ G+ +G ++V D S D+ + F ESCG+CTPCR G+ Sbjct: 587 DWDD-PLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 645 Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V++R+ + G + LL + ++ ++CA+G +P++ ++++ Sbjct: 646 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHYPADF 703 >gi|149374623|ref|ZP_01892397.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola DG893] gi|149361326|gb|EDM49776.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola DG893] Length = 460 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 155/404 (38%), Positives = 234/404 (57%), Gaps = 8/404 (1%) Query: 20 LSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + + + + +V L+ G II +K + +RGRGGAGFS G+KWS + + Sbjct: 45 LDEYLRKDGYQSVRAALDNGNPQAIIATMKDANVRGRGGAGFSAGLKWSLTLQGGNMPRG 104 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YL+ NADE EPGT KDR +M +PH LIEG ++ + A + +I++RGE++ L Sbjct: 105 YLICNADEMEPGTFKDRLLMEQQPHLLIEGMILGALANNSFYGYIFLRGEYVEAARVLNR 164 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DE +G LG++ G+D DI VH GAG YICGEETAL+ SLEGK+ PR KPPFP Sbjct: 165 ALDEAREAGWLGADINGSGFDFDIAVHTGAGRYICGEETALINSLEGKRANPRAKPPFPG 224 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G P+ VNNVE++ VP ++ +GA WY R ++ G+KL+ +SG V P E Sbjct: 225 QSGAWGKPSVVNNVETLCNVPAVILKGADWYQALSGDRTDDGGSKLYGVSGPVEKPGLWE 284 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M T E++E+ G +L A +PGG+S L + +D+D + + GS L Sbjct: 285 LPMGTTGAEILERAGGM--RANRSLKAWLPGGASTGFLLPEHL-DLPLDFDTVGKEGSRL 341 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + V+ + ++ + L F+ ESCG CTPCR+G W ++++ L G + +I Sbjct: 342 GTGLLTVVPQEQSMVALMRNLEEFFARESCGWCTPCRDGLPWTVKLLRALELGQGETGDI 401 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +LL +++ + G T CA AA P+Q +K+FR E+ + + Sbjct: 402 ELLDKLAADCGPGLTFCAHAPGAAMPLQTALKHFRQEFEQGVGK 445 >gi|73748098|ref|YP_307337.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] gi|147668874|ref|YP_001213692.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|289432124|ref|YP_003461997.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|73659814|emb|CAI82421.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] gi|146269822|gb|ABQ16814.1| NADH dehydrogenase subunit F [Dehalococcoides sp. BAV1] gi|288945844|gb|ADC73541.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 417 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 152/418 (36%), Positives = 228/418 (54%), Gaps = 9/418 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D I +L + ++ G + + K L + +I EVK S L GRGGA F Sbjct: 1 MKDLKIITRHLNTANSADIDVYLADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFP 60 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K + P Y+V NA E EPGT KDR I++++PH ++EG +IA++A+G Sbjct: 61 TGLKWELTRKEKA-NPKYIVCNASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQG 119 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FI+ R + +E E Q A+D+ G LG N + +DI + AGAYICGEETAL E Sbjct: 120 FIHAREVYTQEIELFQKAIDQATERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFE 179 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG +G P +PP+P VGL PTTVNNVE++ +P I+ GA W++ G + GTK Sbjct: 180 SLEGHRGIPATRPPYPVQVGLMDKPTTVNNVETLCNIPAIINNGADWFASIGHPDYPGTK 239 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SG+V P E + +L+E GG+ G AV+PGG S L Sbjct: 240 LFCLSGNVKKPGVFELPLGTNLKDLLE-AGGGVDG---KFKAVLPGGISSSLLTET---D 292 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+ L + G+ LG+ AVIV++ T ++ ++ F+ E CG+C+ CREGT Sbjct: 293 ISLDFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAE 352 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ R +G + E++ L E+ + ++ C LG A I+NF+ ++ + Sbjct: 353 ILSRFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGEFLAQVRK 410 >gi|325274757|ref|ZP_08140793.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51] gi|324100101|gb|EGB97911.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51] Length = 519 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 154/416 (37%), Positives = 221/416 (53%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 98 LNTQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADM 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ L+ A A+G LG+N + G ++ V GAGAYICGEETALL Sbjct: 217 GYIYVRSEYPDAIRVLEQAFAIARAAGYLGANVAGSGRAFELQVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V + VE + +T EL+E + GG G L A GG +P Sbjct: 337 MPFQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ MG+ LG V+V D + ++ F ESCG+CTPCR G+ M Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454 Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 455 EVVDRLIASSETGERHDHALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYFPADF 510 >gi|167032816|ref|YP_001668047.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1] gi|166859304|gb|ABY97711.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1] Length = 519 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 151/416 (36%), Positives = 219/416 (52%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 98 LKTQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGADVVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + ++V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRDAGAG-QKFVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ SL A +G LG++ + G D+ V GAGAYICGEETALL Sbjct: 217 GYIYVRSEYPDAIRSLDQAFTIARDAGYLGTDVAGSGQAFDLEVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL++ + GG G L A GG +P Sbjct: 337 MPFQLAGNIRQGGLVERAFGLTLRELVDGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ MG+ LG V+V D + ++ F ESCG+CTPCR G+ M Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454 Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 455 EVVDRLIASSDLAERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYFPADF 510 >gi|197116576|ref|YP_002137003.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem] gi|197085936|gb|ACH37207.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem] Length = 421 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 163/421 (38%), Positives = 242/421 (57%), Gaps = 8/421 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F + + + + S G ++ + + + + V SGLRGRGGAGF TG KW Sbjct: 5 LFRHNRRDRSVAFKEYRSEGGFEALKRAITGMTPAEVQQTVIDSGLRGRGGAGFPTGKKW 64 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+P+ P +++ N DE EPGT KDR ++ H P++LIEG +A +A+G FI++R Sbjct: 65 SFVPRDLPG-PRWIICNCDEMEPGTYKDRVLLEHNPYSLIEGMTLACYALGVRHGFIFIR 123 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 + + E+L A+DE G LG + +DI +H AG YICGEETAL+ +LEGK Sbjct: 124 KGYEQAAENLARAIDEAKKEGFLGERILGSEHSIDIDLHLSAGRYICGEETALINALEGK 183 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSI 244 + PR KPPFPA GL+ PT VNNVE++A +P IL RGA+W+ G G+KLF + Sbjct: 184 RPNPRQKPPFPAVKGLWAGPTVVNNVETLANIPGILARGAAWFKGLAMNPEGAGSKLFCV 243 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V VE + I ++I+ CGG+R G A IPGG+S L A + MD Sbjct: 244 SGSVKDRACVELPIGIPLGDIIDGPCGGMRLG-KRFKACIPGGASTQFLTAEHL-KVPMD 301 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + ++GS LG+ +IV D+ +++A L F+ ESCG CTPCREG ++ ++ R Sbjct: 302 YDPVAKVGSRLGSGGIIVFDQDHCLVEATLNLITFFARESCGWCTPCREGLPYVREILTR 361 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G ++ +I +L E K + + CAL A P+ GL+++F + E I + +C Sbjct: 362 IETGYGKEDDIAILREHIKYL-NYSFCALAPGAMAPLDGLLRHFEDEVREHIVK-KKCPL 419 Query: 425 Q 425 + Sbjct: 420 K 420 >gi|148548760|ref|YP_001268862.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1] gi|148512818|gb|ABQ79678.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1] Length = 519 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 150/416 (36%), Positives = 218/416 (52%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 98 LKTQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ L A +G LG++ + G D+ V GAGAYICGEETALL Sbjct: 217 GYVYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL+E + GG G L A GG +P Sbjct: 337 MPFQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG V+V D + ++ F ESCG+CTPCR G+ M Sbjct: 395 DTPLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454 Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 455 EVVDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYFPADF 510 >gi|254563762|ref|YP_003070857.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit beta [Methylobacterium extorquens DM4] gi|254271040|emb|CAX27047.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta subunit [Methylobacterium extorquens DM4] Length = 519 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 145/416 (34%), Positives = 217/416 (52%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S+ D + G + ++ L+ + I+ +V+ SGLRGRGGAG Sbjct: 98 FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAEGIVAQVRDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW+ + SD Y+V NADE + GT DR +M +P LIEG IA+ A GA+ Sbjct: 158 FQAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAN 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ + ++L+ A+ +G+LG N G + V GAGAYICGEET+L Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA G G PT VNNV + VP IL GA Y+ +G + G Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ +E + IT ++IE GG + AV GG P + Sbjct: 337 TLPIQLAGNIKQGGLIEYAFGITIRQVIEDFGGGT-MSGRPVRAVQVGGPLGAYFPDE-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ + +G ++V D + D+ K F ESCG+CTPCR G Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + M++++ GI + + L+ ++ + + ++CA+G P+ I NF Sbjct: 455 VETMDKVISGIRPEANLKLVADLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510 >gi|83719980|ref|YP_442161.1| formate dehydrogenase subunit beta [Burkholderia thailandensis E264] gi|257138350|ref|ZP_05586612.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis E264] gi|83653805|gb|ABC37868.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis E264] Length = 522 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSVDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRDAAA-AQKYIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L A+ A+G LG++ + ++ V GAGAY+CGEETALL Sbjct: 218 GHIYVRSEYPHAIAALGEAIARSRAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A VP I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPVPALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ GG G A GG LP Q Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ F ESCG+CTPCR G+ + Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ G ++++ LL E+ + ++CA+G +P+ + +F Sbjct: 456 ETIAKIRAGDTSEKQVRLLRELCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|223937081|ref|ZP_03628989.1| NADH dehydrogenase (quinone) [bacterium Ellin514] gi|223894362|gb|EEF60815.1| NADH dehydrogenase (quinone) [bacterium Ellin514] Length = 478 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 191/432 (44%), Positives = 252/432 (58%), Gaps = 37/432 (8%) Query: 19 SLSDSMSRGHWDNVDKILE------------KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 + + G ++ + K L G + I +VK SGLRGRGGAGFS G+KW Sbjct: 20 DMECYLRHGGYEALKKALAIQPKSLPDGKSMSGPEQIREDVKVSGLRGRGGAGFSCGLKW 79 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 SF+ + S +P YL+ NADESEPGT KDR I+ +PH +IEG +I+ FA A+IY+R Sbjct: 80 SFVDR-KSGKPIYLICNADESEPGTFKDRQILHKDPHQMIEGMIISCFANDVKLAYIYIR 138 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GEF L A+ E A LG N GYD++I VH GAGAYICGEET L+ESLEGK Sbjct: 139 GEFPDGARILNKALKEARAKNFLGKNILGSGYDLEIHVHRGAGAYICGEETGLIESLEGK 198 Query: 186 KGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 + PR+KPP FPA +GLY CPT VNNVE++ V ++ G S Y+ G NN GT++ SI Sbjct: 199 RAYPRIKPPYFPAILGLYMCPTIVNNVETLCQVKHVVAMGGSEYAKIGTPNNTGTRIVSI 258 Query: 245 SGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG------- 296 SG V P E + T +LI + GG+ G L A+IPGGSS AG Sbjct: 259 SGQVKKPGYYEIEVGKATIGQLINEFAGGLHDGRK-LKAIIPGGSSAKVFKAGEKFKLKK 317 Query: 297 ------------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344 M D+D L GS G+ A+IVMD S DI++A+ LS FY HES Sbjct: 318 KGPDGKDIEQEVDMLDLPYDFDSLMAAGSMSGSGAIIVMDDSVDIVEALANLSEFYAHES 377 Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQG 403 CGQCTPCREG+ WM + + R+ G +K++ + L +++ NI GRTICA G+A +WP+Q Sbjct: 378 CGQCTPCREGSLWMSKALHRMTHGEGRKQDAEYLLKIADNIPGGRTICAFGEACSWPVQS 437 Query: 404 LIKNFRPLIEER 415 + F+ + Sbjct: 438 FVGKFKDEFIAK 449 >gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] Length = 629 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 143/431 (33%), Positives = 227/431 (52%), Gaps = 11/431 (2%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q R + + + + ++ G + K + + V SGLRGRGG Sbjct: 137 FYQRQTRTVLKECGFIDPDDIREYVAHGGYAAARKAFADMDAKGVCDVVSQSGLRGRGGG 196 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG KW +V ++ Y++ N DE +PG DR +M PH +IEG +IA+ IGA Sbjct: 197 GFPTGRKWE-AARVQTNPKKYVICNGDEGDPGAFMDRSLMEGNPHCVIEGMMIAARGIGA 255 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177 +IYVR E+ + ++ AV + A+G LG N G + V GAGA++CGEETA Sbjct: 256 DEGYIYVRAEYPLAVKRMRKAVADAEAAGYLGDNLFGSGQSFRLEVMEGAGAFVCGEETA 315 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G P KPPFPA GL+ PT +NNVE++A +P I+ GA+ Y G E + Sbjct: 316 LIASIEGLRGMPSPKPPFPAQQGLWRKPTIINNVETLAQIPRIISEGAAAYRALGTETSP 375 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPC 292 GTK F+++GHV+ +E T E++ GG+ AV GG S C Sbjct: 376 GTKTFALTGHVSNTGLIEVPFGATLREVVLNIGGGVTDDRGFIDEKGFKAVQIGGPSGGC 435 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 + +D+D L+ +G+ +G+ ++VM++ T ++ F + ESCG+C CR Sbjct: 436 -LTPDLLDLPLDFDSLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCR 494 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGT ++ +++ +++G + LL + ++ ++C LG A P+ +K+FR Sbjct: 495 EGTKQLLALLDDVIEGRGTAETLSLLETLGHAVQVGSLCGLGKTAPNPVLSTLKHFRKDY 554 Query: 413 EERIDQYHRCN 423 EE + + RC+ Sbjct: 555 EEHVFE-KRCS 564 >gi|313499696|gb|ADR61062.1| NADH dehydrogenase (quinone) [Pseudomonas putida BIRD-1] Length = 519 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 151/416 (36%), Positives = 218/416 (52%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 98 LKTQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ L A +G LG++ + G D+ V GAGAYICGEETALL Sbjct: 217 GYIYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL+E + GG G L A GG +P Sbjct: 337 MPFQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG V+V D + ++ F ESCG+CTPCR G+ M Sbjct: 395 DTPLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454 Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 455 EVVDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYFPADF 510 >gi|260427443|ref|ZP_05781422.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp. SE45] gi|260421935|gb|EEX15186.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp. SE45] Length = 506 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 145/413 (35%), Positives = 214/413 (51%), Gaps = 7/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q R+ G+ SL + G + + L + I +EVK SGLRGRGGAGF Sbjct: 91 MKRQTRLTFARCGITDPFSLDQYEALGGLVGLRRALGMTGEQITDEVKLSGLRGRGGAGF 150 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + +D Y+V NADE + GT DR IM +P LIEG IA GA Sbjct: 151 PTGIKWDTVRMAHAD-RKYIVCNADEGDSGTFADRMIMEGDPFCLIEGMTIAGIGCGATK 209 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 F+Y R E+ ++ A++ A+G+LG + G ++ V GAGAY+CGEET+LL Sbjct: 210 GFVYTRSEYPDAVAVMRRAIEIARAAGVLGPDVLGSGKAFELEVRVGAGAYVCGEETSLL 269 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA G +G PT VNNV S+A VP I +GA +Y+ FG ++GT Sbjct: 270 NSLEGKRGVVRAKPPLPALEGAFGKPTVVNNVISLATVPVIFEKGAEFYANFGLGRSKGT 329 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V + E + + +++E GG G + AV GG L Q Sbjct: 330 IPLQIAGNVRHGGLFETAFGMKLGQIVEDLGGGSASG-RAVKAVQVGGPLGAYLGTDQ-F 387 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 Y+ G+ +G A ++V D + D++ F ESCG+CTPCR G + Sbjct: 388 DTPFGYEEFDGEGALIGHAGLVVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRGV 447 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ G + LL ++ + ++ ++CALG +P+ ++ F Sbjct: 448 ETLDRIAAG--DAEAVPLLTDLCETMKDGSLCALGGFTPYPVMSALRLFPEEF 498 >gi|170720892|ref|YP_001748580.1| NADH dehydrogenase [Pseudomonas putida W619] gi|169758895|gb|ACA72211.1| NADH dehydrogenase (quinone) [Pseudomonas putida W619] Length = 519 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 154/416 (37%), Positives = 221/416 (53%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G + +++ + G ++ V SGLRGRGGA F Sbjct: 98 LKTQQRLLFARAGITRPLSLDDYRAHGGFAGLEQAVALGGAEVVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ L A +G LG + + G D+ V GAGAYICGEETALL Sbjct: 217 GYIYVRSEYPDAIRVLNEAFVIARDAGYLGFDVAGSGQAFDLEVRVGAGAYICGEETALL 276 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT V+NV ++A VPTIL +GA++Y FG + GT Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPTILAKGAAFYRDFGMGRSLGT 336 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE + +T EL+E + GG G L A GG +P Sbjct: 337 MPFQLAGNIRHGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ MG+ LG V+V D + ++ F ESCG+CTPCR G+ M Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSIRGM 454 Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 455 EVVDRLIASSDLTERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYFPADF 510 >gi|270307597|ref|YP_003329655.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] gi|270153489|gb|ACZ61327.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] Length = 417 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 153/418 (36%), Positives = 227/418 (54%), Gaps = 9/418 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D I +L + ++ G + + K L + +I EVK S L GRGGA F Sbjct: 1 MKDVKIITRHLNTANSADIDVYLADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFP 60 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K + P Y+V NA E EPGT KDR I++++PH ++EG +IA++A+G Sbjct: 61 TGLKWELTRKEKA-NPKYIVCNASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQG 119 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FI+ R + E E Q A+D+ G LG N + +DI + AGAYICGEETAL E Sbjct: 120 FIHAREVYTEEIELFQKAIDQATERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFE 179 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG +G P +PP+P VGL PTTVNNVE++ VP I+ GA W++ G + GTK Sbjct: 180 SLEGHRGIPAARPPYPVQVGLMDKPTTVNNVETLCNVPAIINNGADWFASIGHPDYPGTK 239 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SG+V P E + +L+E GG+ G AV+PGG S L Sbjct: 240 LFCLSGNVKEPGVFEMPLGTNLKDLLE-AGGGVDG---KFKAVLPGGISSSLLTET---D 292 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+ L + G+ LG+ AVIV++ T ++ ++ F+ E CG+C+ CREGT Sbjct: 293 ISLDFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAE 352 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ R +G + E++ L E+ + ++ C LG A I+NF+ ++ + Sbjct: 353 ILSRFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGEFLAQVRK 410 >gi|91784827|ref|YP_560033.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia xenovorans LB400] gi|91688781|gb|ABE31981.1| formate dehydrogenase beta subunit [Burkholderia xenovorans LB400] Length = 521 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 150/414 (36%), Positives = 224/414 (54%), Gaps = 6/414 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + + L+ D + SGLRGRGGA F Sbjct: 98 LKKQQRLTFARIGITDPLSIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P+ LIEG +IA GA Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETAL 178 IYVR E+ +L+AA+ + A+G LG + + ++ V GAGAY+CGEETAL Sbjct: 217 GHIYVRSEYPHSIATLEAAIAKARAAGWLGDSVLGSTEHRFELFVAKGAGAYVCGEETAL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEGK+G R KPP PA VGL+G PT +NNV ++A VP I RGA++Y FG +RG Sbjct: 277 LESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G+V VE + +T EL+ ++ GG G AV GG LP Q Sbjct: 337 TLPFQLAGNVKQGGLVELAFGVTLRELLYEYGGGTASGRPA-RAVQVGGPLGTYLPESQ- 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ +G+ +G ++V D ++++ + F ESCG+CTPCR G+ Sbjct: 395 WDIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + V+ R+ G R++ LL ++ + ++CA+G +P+ + +F Sbjct: 455 VEVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 508 >gi|226227790|ref|YP_002761896.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27] gi|226090981|dbj|BAH39426.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27] Length = 520 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 147/409 (35%), Positives = 222/409 (54%), Gaps = 5/409 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L +Q R+ F + + SL D + G +++ + I+ E+ ASGLRGRGGA F Sbjct: 96 LAEQVRLTFARIGRIDPLSLDDYRTAGGLLGLERAIGMDSAGIVREITASGLRGRGGAAF 155 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 156 PAGIKWETVRNARAP-QKYVVCNADEGDSGTFADRLLMEADPFQLIEGMTIAALAVGATQ 214 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ + A+ ++G+LG++ + DI + G GAYICGEETALL Sbjct: 215 GYVYLRSEYPYAAQIFGEALARARSAGMLGASVCGSSHAFDITLRIGGGAYICGEETALL 274 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV + A +L RGA Y+ G + + GT Sbjct: 275 ESLEGKRGVVRAKPPLPALQGLFGQPTVINNVLTFAAATDVLARGAQHYASHGLDRSTGT 334 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F + G++ VE IT +L+E+ GG L A+ GG LPA Q Sbjct: 335 MPFQLGGNIQRGGLVELPFGITLRDLVERFGGG-SYSGRALRAIQVGGPLGAYLPASQ-W 392 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 + Y+ +G+ LG ++ D + D+ F HESCG+CTPCR G+ + Sbjct: 393 DTPLTYEHFAAIGAMLGHGGIVAFDDTVDMAAQAEFAMAFCAHESCGKCTPCRIGSTRGV 452 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 V++RL + + + +LL E+ + +E ++CALG P++ ++K+F Sbjct: 453 EVIQRLRRREQVRDQWNLLEELCETMELGSLCALGGLTPMPVRSVMKHF 501 >gi|26988908|ref|NP_744333.1| NADH dehydrogenase (quinone) [Pseudomonas putida KT2440] gi|24983719|gb|AAN67797.1|AE016411_2 formate dehydrogenase, beta subunit, putative [Pseudomonas putida KT2440] Length = 525 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 151/416 (36%), Positives = 218/416 (52%), Gaps = 8/416 (1%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G + ++ + ++ V SGLRGRGGA F Sbjct: 104 LKTQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 163 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 164 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 222 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ L A +G LG++ + G D+ V GAGAYICGEETALL Sbjct: 223 GYIYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALL 282 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 283 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 342 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE + +T EL+E + GG G L A GG +P Sbjct: 343 MPFQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 400 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ LG V+V D + ++ F ESCG+CTPCR G+ M Sbjct: 401 DTPLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 460 Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ D LL ++ ++ ++CA+G A+P+ +K F Sbjct: 461 EVVDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYFPADF 516 >gi|124268893|ref|YP_001022897.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124261668|gb|ABM96662.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 520 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + SL+D + W + + L +++EV SGLRGRGGA F Sbjct: 101 LAKQERLCFARMGLTDPLSLADYEAHEGWAGLRRALAMPDAAVVDEVLQSGLRGRGGAAF 160 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + S Y+V NADE + GT DR M +P+ LIEG IA+ A+GA Sbjct: 161 PTGIKWKTVMNTPS-AQKYIVCNADEGDSGTYSDRMTMEGDPYMLIEGMTIAALAVGATR 219 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ +L A+ A+G LGS+ G + V AGAY+CGEETALL Sbjct: 220 GYVYVRSEYPHAIATLNDAIARAEAAGFLGSDVLGSGRAFHLQVRKAAGAYVCGEETALL 279 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV S A VP IL RGA+ Y +G + GT Sbjct: 280 ESLEGKRGIVRAKPPLPAIEGLFGQPTVINNVISFASVPLILARGAAHYRDYGVGRSMGT 339 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V VE++ +T EL+ GG G + AV GG +P + Sbjct: 340 LPIQLAGNVKRGGLVEKAFGVTLRELLYDFGGGTASGRP-IKAVQVGGPLGTYVPESK-W 397 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ G +G ++V D + D+ K F ESCG+CTPCR G+ + Sbjct: 398 DVPLDYEAYAAFGGVVGHGGIVVHDDTADMAKLARYAMEFCAIESCGKCTPCRIGSTRGV 457 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ + + ++ LL ++ + ++CA+G +P+ + ++ Sbjct: 458 EVIDRITANVNRPAQVKLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHYPEDF 510 >gi|85707197|ref|ZP_01038283.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Roseovarius sp. 217] gi|85668251|gb|EAQ23126.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Roseovarius sp. 217] Length = 502 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 220/413 (53%), Gaps = 7/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q R+ F + + +++D + G + + +E I+ EV SGLRGRGGAGF Sbjct: 87 MKRQTRLTFARVGVVDPLNITDYEAHGGLVGLRRAIEMDGAGIVAEVTQSGLRGRGGAGF 146 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + + Y+V NADE + GT DR +M +P TLIEG IA +GA Sbjct: 147 PTGIKWKTVFEAQAP-QKYIVCNADEGDSGTFADRMVMEGDPFTLIEGMTIAGLGVGATR 205 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ ++ AV+ A+G+LG++ G D+ + GAGAY+CGEET+LL Sbjct: 206 GYVYLRSEYPDAIRVMRRAVEIARAAGVLGADVLGSGRAFDMEIRVGAGAYVCGEETSLL 265 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA G G PT VNNV S+A VP I +GA Y+ FG +RGT Sbjct: 266 NSLEGKRGVVRAKPPLPALEGFLGRPTVVNNVISLATVPVIFEKGAQHYADFGLGRSRGT 325 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V E + IT DE++ GG G + AV GG +P Sbjct: 326 VTLQIAGNVARGGLFETAFGITLDEVVNDLGGGTASGRP-VKAVQVGGPLGSYIPVDN-F 383 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A + Y+ L G LG A ++V D + D+++ F ESCG+CTPCR G + Sbjct: 384 DAALGYEELDARGGLLGHAGLVVFDDAADMLQMARFAMEFCAVESCGKCTPCRIGAVRGV 443 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ G I LL ++ + ++ ++CALG P+ + +F Sbjct: 444 ETIDRIAAGDGSA--IPLLTDLCETMKDGSLCALGGFTPLPVMSALTHFPNDF 494 >gi|148262412|ref|YP_001229118.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4] gi|146395912|gb|ABQ24545.1| NADH dehydrogenase subunit F [Geobacter uraniireducens Rf4] Length = 433 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 169/409 (41%), Positives = 237/409 (57%), Gaps = 8/409 (1%) Query: 19 SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + ++ G +D + K L E + + V + LRGRGGAGF TG KWSF+P+ P Sbjct: 25 TFTEYCGEGGFDALKKALKELSPNDVQQLVIDANLRGRGGAGFPTGKKWSFVPRDLPG-P 83 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +L+ N DE EPGT KDR ++ P +L+EG ++A +AIG AFI++R + +++ Sbjct: 84 RWLICNCDEMEPGTYKDRVLLEANPWSLVEGIILACYAIGVSHAFIFIRRGYETAAGNVR 143 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+ E +GL+G N G+ DI +H AG YICGEETAL+ +LEGK+ PR KPPFP Sbjct: 144 RAIAEAKGAGLIGDNILGSGFSCDIDLHVSAGRYICGEETALMNALEGKRANPRSKPPFP 203 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255 A GL+G PT VNNVE++A +P I+ G +W+ G + GTKLF ISGHV +E Sbjct: 204 AVKGLWGGPTVVNNVETLANIPYIIANGPAWFKGLAKIPEAAGTKLFCISGHVQNTVCME 263 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + + ++I+ CGG+ A IPGG+S P RG MD+D + + GS L Sbjct: 264 LPLGMPLGDIIDGPCGGM-LPGKRFKACIPGGASTPFFTEEH-RGVPMDFDTVAKAGSRL 321 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT +IV D T ++ A L FY ESCG CTPCREG +++ V+ RL G + +I Sbjct: 322 GTGGIIVFDEETCLVGATLNLVKFYARESCGWCTPCREGLPFVVDVLARLEAGKGETEDI 381 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 D+L E K + CAL A P++GL++ F I E I + RC F Sbjct: 382 DILREHVKYL-NLAFCALAPGAMGPVEGLLRLFEEEIREHIIK-RRCPF 428 >gi|78065617|ref|YP_368386.1| NADH dehydrogenase (quinone) [Burkholderia sp. 383] gi|77966362|gb|ABB07742.1| formate dehydrogenase beta subunit [Burkholderia sp. 383] Length = 525 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 142/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + +L D + + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLQYEGLAGLKNVLALDGDAVCEALIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GLYG PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLYGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ + VE S +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRHGGLVELSFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYSMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R++ LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|170740591|ref|YP_001769246.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46] gi|168194865|gb|ACA16812.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46] Length = 519 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 158/416 (37%), Positives = 222/416 (53%), Gaps = 5/416 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + S++D + + + + LE G ++ V SGLRGRGGAG Sbjct: 98 FLARQQRLTFHRCGVIDPVSVADYRAHRGYRGLARALEIGAPATVDAVTLSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW+ + + +D Y+V NADE + GT DR +M +P TLIEG IA A+GA Sbjct: 158 FPTGIKWNTVMRAEAD-RKYVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGAA 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY+R E+ E+L+AA+ +G+LG N G D + V GAGAYICGEET+L Sbjct: 217 RGYIYLRSEYPNACETLRAAIAAGERAGVLGRNVMGSGRDFHLEVRLGAGAYICGEETSL 276 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT VNNV S A VP IL G Y+ +G +RG Sbjct: 277 LESLEGRRGIVRAKPPIPALKGLFGRPTLVNNVLSFAAVPWILDHGGEAYAAYGMGRSRG 336 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G+V +E + IT E+IE GG R G + A GG P G + Sbjct: 337 TLPIQLAGNVRQGGLIETAFGITLREVIEDFGGGTRSGRP-VRAAQVGGPLGAYFPEG-L 394 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDY+ +G V+V D S D+ + F ESCG+CTPCR G Sbjct: 395 FDTPMDYEAFAARKGLVGHGGVVVFDDSVDMARQARFAFEFCAVESCGKCTPCRIGAVRG 454 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 M+RL+ G A + L+ ++ + + ++CA+G P+ I +F + Sbjct: 455 RETMDRLLAGEAPAEPLRLIEDLCEVMTDGSLCAMGGLTPVPVMSAITHFPEDFDR 510 >gi|3724144|emb|CAA11234.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 520 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q+R+ G+ SL D + + +++ L I+ EV SGLRGRGGA Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + S Y+V NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 160 FPTGIKWKTVLGAQS-AVKYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 +IY R E+ L++A+ A+G LG + G + V GAGAY+CGEETAL Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LESLEG++G R KPP PA GL+G PT +NNV S+A V R A +Y +G +RG Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVAGESWRAAEYYRDYGMGRSRG 338 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T F ++G++ VE++ +T EL+ + GG R G + AV GG LP + Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 396 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +DY+ G +G ++V D + D+ KA F ESCG+CTPCR G+ Sbjct: 397 FDVPLDYEAYAAFGGVVGHGGIVVFDETVDMAKAGPYAMEFCAIESCGKCTPCRIGSTRG 456 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + VM+R++ G + + L+ ++ + ++CA+G +P+ + F Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 510 >gi|226227804|ref|YP_002761910.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] gi|226090995|dbj|BAH39440.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27] Length = 439 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 172/404 (42%), Positives = 245/404 (60%), Gaps = 4/404 (0%) Query: 17 GKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 SL+ +RG + ++ K L + EV ASGL G GGA F G KW + K+ Sbjct: 16 SHSLAAYKARGGYQSLQKALTSMQPTDVTKEVAASGLLGHGGAAFPAGRKWG-VIKLTDG 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 PHY+ +NADE EPGT KDR ++ H PH IEG ++AS+AI AFIY+RGEF Sbjct: 75 EPHYVCMNADEGEPGTFKDRWLLEHVPHLCIEGLILASYAIMGRHAFIYIRGEFDLPFRR 134 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ A++E YA+GLLG N GY +DI+++ GAG+Y+CGE +A+L SLEGKKG PR +PP Sbjct: 135 LRDAIEEAYAAGLLGENILGTGYSLDIVLYRGAGSYVCGEASAMLASLEGKKGWPRNRPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 GLY PT VNNVE++A +P I+ G + G + GT++ SISGH+ P Sbjct: 195 RLTVKGLYQRPTVVNNVETLANIPAIIGEGGETFRKVGLPKSPGTQMISISGHLVRPGVY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E ++++ I + CGGI G L VIPGG S L A +++G +D++ GS Sbjct: 255 EIEYGYSWEKFIYEDCGGI-LGGRALKCVIPGGVSTKILDANELKGRTLDHNSALAAGSQ 313 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+ +IV+ T +++ + FY HESCGQCTPCREG GWM R+++R+V+G + + Sbjct: 314 IGSGGMIVIAEGTCMVRVARVIQRFYHHESCGQCTPCREGMGWMERILDRIVRGEGRPED 373 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ID LY +S +G TIC+LGD+A + ++ ++R E I Sbjct: 374 IDRLYHISTANDGTTICSLGDSAGYACSAILDHYRDEFEHFITH 417 >gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] Length = 717 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 142/415 (34%), Positives = 221/415 (53%), Gaps = 7/415 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ G+ SL D + G W + + I+ +V SGLRGRGGA F Sbjct: 295 LARQERLTFARVGIVDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLESGLRGRGGAAF 354 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+ NADE + GT DR +M +P LIEG IA+ A+GA Sbjct: 355 PAGIKWKTVAAAPAP-QKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAALAVGATQ 413 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ L A+ A+G LG+N + G + V GAG+Y+CGEETA+L Sbjct: 414 GYVYVRSEYPHAIAVLNEAIARASAAGWLGNNVAGSGKAFYLQVRKGAGSYVCGEETAML 473 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y G+G +RGT Sbjct: 474 ESIEGKRGIVRAKPPLPAIEGLFGRPTVINNVITLATVPIILARGAAFYQGYGMGRSRGT 533 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ +T EL++ GG G + A+ GG + Sbjct: 534 LPFQLAGNIAQGGLVEKAFGLTLRELVQDFGGGTASGRP-VKAIQVGGPLGSYVAPEDWD 592 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ G+ +G ++V D D+ + F ESCG+CTPCR G+ + Sbjct: 593 D-PLDYETYAAKGNVVGHGGLVVHDDGADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 651 Query: 360 RVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ + G + LL + ++ ++CA+G +P++ ++++ Sbjct: 652 EVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHYPQDF 706 >gi|260576446|ref|ZP_05844436.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2] gi|259021329|gb|EEW24635.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2] Length = 509 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 150/410 (36%), Positives = 211/410 (51%), Gaps = 7/410 (1%) Query: 5 QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ F SL++ + G + + L I+ EV ASGLRGRGGAGF TG Sbjct: 97 QTRLTFARCGVTDPLSLAEFQAHGGLAGLRRALAMVPADIVAEVTASGLRGRGGAGFPTG 156 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + + + Y+V NADE + GT DR IM +P LIEG IA A+GA ++ Sbjct: 157 IKWKTVAEAGAG-QKYIVCNADEGDSGTFADRMIMEGDPFLLIEGMTIAGLAVGATKGYV 215 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + AV A GLLG++ G DI + GAGAY+CGEET+LL SL Sbjct: 216 YIRSEYPDAIAVMTEAVVLARAEGLLGASVLGSGKAFDIEIRTGAGAYVCGEETSLLNSL 275 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA G G PT VNNV S+ VP IL +GA +Y FG +RGT Sbjct: 276 EGKRGVVRAKPPLPALHGFLGRPTVVNNVISLTSVPIILDKGAGYYRDFGLGRSRGTIPL 335 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 I+G+V + E + +T E+++ GG G + AV GG P + Sbjct: 336 QIAGNVRFGGLFEVAFGLTLGEIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRE-LFDTP 393 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 Y+ G +G A ++V D + D++ F ESCG+CTPCR G M + Sbjct: 394 FCYEEYAGKGGLVGHAGLVVFDDTADMLHQARFAMEFCAIESCGKCTPCRIGAVRGMETL 453 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +R+ G I LL ++ ++ ++CALG +P+ + +F Sbjct: 454 DRI--GRGDTAAIPLLSDLCDTMKAGSLCALGGFTPYPVMSALTHFPDDF 501 >gi|332559554|ref|ZP_08413876.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides WS8N] gi|332277266|gb|EGJ22581.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides WS8N] Length = 509 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ G+ L + + G ++ + + + R I+ EV SGLRGRGGAGF TG Sbjct: 97 QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTG 156 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + + + Y+V NADE + GT DR IM +P TLIEG IA A GA ++ Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ E + AV A GLLG + G D+ + GAGAY+CGEET+LL SL Sbjct: 216 YMRSEYPDAVEVMGEAVRIARAHGLLGPSVIGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA G G PT VNNV S+A +P I ++GA++Y FG +RGT Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 I+G+V E + ++ ++++ GG G + AV GG P + Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 Y+ +G A ++V D + D++K F ESCG+CTPCR G M + Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +R+ +G I LL ++ ++ ++CALG +P+ + +F Sbjct: 454 DRIARG--DAAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501 >gi|104780976|ref|YP_607474.1| formate dehydrogenase subunit beta [Pseudomonas entomophila L48] gi|95109963|emb|CAK14668.1| putative formate dehydrogenase, beta subunit [Pseudomonas entomophila L48] Length = 517 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 149/415 (35%), Positives = 218/415 (52%), Gaps = 8/415 (1%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ SL D + G ++ + + D ++ V SGLRGRGGA F Sbjct: 98 LKTQQRLLFARAGITRPLSLDDYHANGGFEGLRQATLMEGDEVVAAVLDSGLRGRGGAAF 157 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P LIEG +IA A+GA Sbjct: 158 PAGIKWRTVRQAQA-VRKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGASH 216 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 +IYVR E+ L A+ +G L + G + V GAGAYICGEETALLE Sbjct: 217 GYIYVRSEYPDAIRVLNEAILLAREAGYL-DVAGNGVAFHLEVRVGAGAYICGEETALLE 275 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G R KPP PA GL+G PT V+NV ++A VP IL +GA++Y FG + GT Sbjct: 276 SIEGKRGIVRAKPPLPALEGLFGQPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTL 335 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 F ++G+V VE + +T EL+E + GG G L A GG +P Sbjct: 336 PFQLAGNVLRGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPTN-FD 393 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ MG+ LG V+V D + D+ F ESCG+CTPCR G+ + Sbjct: 394 TPLDYEAFAAMGAMLGHGGVVVADDTLDMAGMARFALQFCAEESCGKCTPCRIGSTRGLE 453 Query: 361 VMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++RL+ ++ + LL ++ ++ ++CA+G +P+ + +F Sbjct: 454 VIDRLIASTDPAYRQGQAGLLRDLCDTMQYGSLCAMGGMTPYPVVSALDHFPADF 508 >gi|221640574|ref|YP_002526836.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] gi|221161355|gb|ACM02335.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] Length = 509 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ G+ L + + G ++ + + + R I+ EV SGLRGRGGAGF TG Sbjct: 97 QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTG 156 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + + + Y+V NADE + GT DR IM +P TLIEG IA A GA ++ Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ E + AV A GLLG + G D+ V GAGAY+CGEET+LL SL Sbjct: 216 YMRSEYPDAVEVMGEAVRIARAHGLLGPSVMGSGRAFDMEVRVGAGAYVCGEETSLLNSL 275 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA G G PT VNNV S+A +P I ++GA++Y FG +RGT Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 I+G+V E + ++ ++++ GG G + AV GG P + Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 Y+ +G A ++V D + D++K F ESCG+CTPCR G + + Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGIETV 453 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +R+ +G I LL ++ ++ ++CALG +P+ + +F Sbjct: 454 DRIARG--DTAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501 >gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] Length = 646 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 156/403 (38%), Positives = 219/403 (54%), Gaps = 10/403 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + SL D + G + + + G +I EV +GL GRGGA F TG KW Sbjct: 246 LLHRIGTTDPTSLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQ 305 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 D PHYLV NADESEPGT KDR +M +P+ L+E IA++A GAH ++Y+RG Sbjct: 306 ATA-AQPDHPHYLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRG 364 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L A+++ GLLG + GY DI + GAGAYICGEETAL S+EG++ Sbjct: 365 EYPRALARLTHAIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRR 424 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+G PT NNVE++ V IL GA Y+ G + G KLF +SG Sbjct: 425 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSG 484 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E T EL+ DNL AV+ GG++ + ++ + ++ Sbjct: 485 TVARPGVYELPFGATLGELLALAG-----VRDNLRAVLLGGAAGGFVRPDEL-DIPLTFE 538 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G +E G+ LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ Sbjct: 539 GTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIA 598 Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 G A +I LL EV + + +IC LG A ++ I Sbjct: 599 DRTGAAAADDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 641 >gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 641 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 154/395 (38%), Positives = 215/395 (54%), Gaps = 10/395 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L D + G + + + G +I EV SGL GRGGA F TG KW D Sbjct: 249 DPADLDDYRAHGGYTALRRAFALGPAGVIREVTDSGLTGRGGAAFPTGRKWQATA-SQPD 307 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 PHYLV NADESEPGT KDR +M +P+ L+E IA++A GAH ++Y+RGE+ R Sbjct: 308 HPHYLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALRR 367 Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ A+ + A GLLG + GY DI + GAGAYICGEETAL S+EG +G+PR KPP Sbjct: 368 MEHAIGQGRARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGHRGEPRSKPP 427 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FP GL+G PT NNVE++ V +L GA Y+ G + G KLF +SG V P Sbjct: 428 FPVEKGLFGRPTAENNVETLVNVLPVLTLGAQAYAAIGTGRSTGPKLFCVSGSVARPGVY 487 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E T EL+ DNL AV+ GG++ + ++ + ++G +E G+ Sbjct: 488 ELPFGATLGELLRLAG-----VRDNLRAVLLGGAAGGFVRPDEL-DIPLTFEGTREAGTT 541 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQK 372 LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ G Sbjct: 542 LGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALRRIADRTGDGAA 601 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 +I LL EV + + +IC LG A ++ I Sbjct: 602 DDIALLREVGRTMRDASICGLGQTAWNAVESAIDR 636 >gi|254167372|ref|ZP_04874224.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] gi|197623635|gb|EDY36198.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Aciduliprofundum boonei T469] Length = 404 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 154/399 (38%), Positives = 235/399 (58%), Gaps = 7/399 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++ D +++G + + K LE G+D II EV+ SGL GRGGA F TG+K F+ K S Sbjct: 6 DASNVEDYLAQGGFKALRKALEYGQDEIIREVEISGLLGRGGAAFPTGLKMKFVRKEKS- 64 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P Y+V NADE EPGT KDR +M P+ ++EG +I+ +AI A F Y+R E+ + Sbjct: 65 TPKYIVANADEGEPGTFKDRVLMERNPYQILEGMIISGYAIDAKKGFFYIRYEYKEIAKD 124 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ ++E G+LG N + DI + GAGAY+CGEETAL+ES+EGK+G PR+KPP Sbjct: 125 IKRKIEELRRLGILGPNIYGPKFSFDIELVVGAGAYVCGEETALMESIEGKRGYPRIKPP 184 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +PA GL+G PT +NNVE++A +P ++ G + YS G+E G KLFS+SG V P Sbjct: 185 YPAQYGLWGKPTLINNVETLANIPIVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVY 244 Query: 255 EESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E ++ T E+IE G + ++ GG + + + + + KE G Sbjct: 245 EANLGDKTIGEMIELAGG----AEGKIKGIMLGGGAAGFILNEEHLDLPLCFKDAKERGL 300 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT +IV + S + + +S F++HESCGQC PCR GT M ++E++V+G +K Sbjct: 301 FLGTGNIIVFNESVGLWDVLLNISKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKE 360 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +I+ L ++ ++ ++C LG +A + +KNF + Sbjct: 361 DIEKLNATARAMKIASLCPLGASAMLAYESAMKNFHEEL 399 >gi|77464660|ref|YP_354164.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides 2.4.1] gi|77389078|gb|ABA80263.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Rhodobacter sphaeroides 2.4.1] Length = 509 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ G+ L + + G ++ + + + R I+ EV SGLRGRGGAGF TG Sbjct: 97 QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTG 156 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + + + Y+V NADE + GT DR IM +P TLIEG IA A GA ++ Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ E + AV A GLLG + G D+ + GAGAY+CGEET+LL SL Sbjct: 216 YMRSEYPDAVEVMGEAVRIARAHGLLGPSVMGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA G G PT VNNV S+A +P I ++GA++Y FG +RGT Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 I+G+V E + ++ ++++ GG G + AV GG P + Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 Y+ +G A ++V D + D++K F ESCG+CTPCR G M + Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +R+ +G I LL ++ ++ ++CALG +P+ + +F Sbjct: 454 DRIARG--DAAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501 >gi|225850513|ref|YP_002730747.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) [Persephonella marina EX-H1] gi|225646692|gb|ACO04878.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) [Persephonella marina EX-H1] Length = 432 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 159/408 (38%), Positives = 229/408 (56%), Gaps = 14/408 (3%) Query: 19 SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + ++ G + + K LE + I+ V+ S LRGRGGAGF T KW F P Sbjct: 33 DIEEYVTTGGYSALRKALERLKPEDIVVLVEESTLRGRGGAGFPTARKWRFALMNPE--P 90 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ N DESEPGT KDR I+ +PH L+EG +IA +A+GA +IY+RGE+ L+ Sbjct: 91 RYLICNCDESEPGTFKDRIIVERDPHLLLEGMIIAGYALGAKEGYIYIRGEYPAGYLILE 150 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E + G LG N + DI V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+P Sbjct: 151 NAIEEAKSYGFLGENILGTNFSFDIKVYRGAGAYICGEETALIESLEGKRGHPRLRPPYP 210 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG+YG PT VNNVE+++ +P I+ ++ G G KLF ISG V P E Sbjct: 211 AQVGIYGKPTVVNNVETLSNIPIIVTY-EQYFMNIGPSGFYGPKLFPISGKVEKPGVYEA 269 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +M IT ELI+ G AV G V + + MDY G Sbjct: 270 TMDITLRELIDMAGG--IKNGKRFKAVFSGALGVY---SEKDLDMPMDYSP----KGFGG 320 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T IV+D II ++ ++ F+ HESCG+CTPCR GT M +++++ +G +++++ Sbjct: 321 TGTTIVLDEDDCIIDSLLVVANFFHHESCGKCTPCRVGTYEQMNILKKIKEGRGTEKDLE 380 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 L +S+NI +IC LG +A + ++ F E +++ + F Sbjct: 381 YLKHLSENIPAGSICGLGFSAPQAVSDALRKFPEEFEAHLNRSCKVCF 428 >gi|256783976|ref|ZP_05522407.1| respiratory chain oxidoreductase [Streptomyces lividans TK24] Length = 419 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 156/403 (38%), Positives = 219/403 (54%), Gaps = 10/403 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + SL D + G + + + G +I EV +GL GRGGA F TG KW Sbjct: 19 LLHRIGTTDPTSLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQ 78 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 D PHYLV NADESEPGT KDR +M +P+ L+E IA++A GAH ++Y+RG Sbjct: 79 ATA-AQPDHPHYLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRG 137 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L A+++ GLLG + GY DI + GAGAYICGEETAL S+EG++ Sbjct: 138 EYPRALARLTHAIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRR 197 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+G PT NNVE++ V IL GA Y+ G + G KLF +SG Sbjct: 198 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSG 257 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E T EL+ DNL AV+ GG++ + ++ + ++ Sbjct: 258 TVARPGVYELPFGATLGELLALAG-----VRDNLRAVLLGGAAGGFVRPDEL-DIPLTFE 311 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G +E G+ LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+ Sbjct: 312 GTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIA 371 Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 G A +I LL EV + + +IC LG A ++ I Sbjct: 372 DRTGAAAADDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 414 >gi|182412305|ref|YP_001817371.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] gi|177839519|gb|ACB73771.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1] Length = 452 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 180/437 (41%), Positives = 247/437 (56%), Gaps = 29/437 (6%) Query: 4 DQDRIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +Q RI + ++ + G ++ + + + +I+EVK SGLRGRGGAG Sbjct: 5 EQRRIIFR--HIDEPGYTNDIACYLRNGGYEVMKRAFTRPPQELIDEVKKSGLRGRGGAG 62 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW + + S +P YL+VNADESEPGT KDR I+ +PH LIEG +I+ FA Sbjct: 63 FPCGVKWGLVDR-KSGKPIYLIVNADESEPGTFKDRYIIHQDPHQLIEGTMISCFANNVQ 121 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 A+IY+RGEF L+ A+ E +G N Y +I VH GAGAYICGEET L Sbjct: 122 QAYIYIRGEFPHGARILERAIQEAREHNFVGKNILGTAYSCEIYVHRGAGAYICGEETGL 181 Query: 179 LESLEGKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 +ESLEGK+ PR+KPPF PA +G+Y CPT VNNVE++ V I G ++ G NN Sbjct: 182 IESLEGKRAYPRIKPPFFPAVLGVYQCPTIVNNVETLCHVKYIAEVGGEAFAKIGTPNNT 241 Query: 238 GTKLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL--- 293 GT++F +SGHV P E +T +L+ CGG G AVIPGGSS + Sbjct: 242 GTRIFCVSGHVQRPGYYEFETGKVTLGQLLNDVCGGPLPGRK-FKAVIPGGSSAKIMRFG 300 Query: 294 ---------------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 + MD+D L +G+ G+ VIVMD S ++++A+ ++ Sbjct: 301 ERYKGKRKAGTEMVDYDWGVEDVPMDFDSLAMIGTMGGSGGVIVMDDSVNMVEALANINA 360 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 FY HESCGQCTPCREG+ WM R+ R+V A++ + LL V+ I GRTICA G+A + Sbjct: 361 FYSHESCGQCTPCREGSLWMKRITTRMVHANAREEDAALLKSVADQIPGRTICAFGEACS 420 Query: 399 WPIQGLIKNFRPLIEER 415 WP Q ++ F + Sbjct: 421 WPTQSFVQKFGDEFKAY 437 >gi|146278886|ref|YP_001169045.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] gi|145557127|gb|ABP71740.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] Length = 509 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ G+ L + + G ++ + + + R I+ EV SGLRGRGGAGF TG Sbjct: 97 QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIGMSRAEILQEVIESGLRGRGGAGFPTG 156 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + + +D Y+V NADE + GT DR IM +P TLIEG IA A GA ++ Sbjct: 157 IKWKTVSEAQAD-QKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ E + AV GLLG + G D+ + GAGAY+CGEET+LL SL Sbjct: 216 YMRSEYPDAVEVMIEAVRIARGHGLLGPSVMGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA G G PT VNNV S+A +P I ++GA++Y FG +RGT Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 I+G+V E + ++ ++++ GG G + AV GG P + Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 Y+ +G A ++V D + D++K F ESCG+CTPCR G M + Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +R+ +G I LL ++ ++ ++CALG +P+ + +F Sbjct: 454 DRIARG--DAAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501 >gi|57235004|ref|YP_180896.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] gi|57225452|gb|AAW40509.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] Length = 417 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 155/418 (37%), Positives = 227/418 (54%), Gaps = 9/418 (2%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + D I +L + M+ G + + K L D +I EVK S L GRGGA F Sbjct: 1 MQDIKIITRHLNTASSADIDVYMADGGYQALKKALSMTPDEVIAEVKRSKLVGRGGAAFP 60 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KW K + P Y+V NA E EPGT KDR I++++PH ++EG +IA++A+G Sbjct: 61 TGLKWELTRKEKA-NPKYIVCNASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQG 119 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 FI+ R + E E Q A+D+ G LG N + +DI + AGAYICGEETAL E Sbjct: 120 FIHAREVYTEEIELFQKAIDQATERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFE 179 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG +G P +PP+P VGL PTTVNNVE++ VP I+ GA W++ G + GTK Sbjct: 180 SLEGHRGIPAARPPYPVQVGLMDKPTTVNNVETLCNVPAIINNGADWFAAIGHPDYPGTK 239 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF +SG+V P E + +L+E GG+ G AV+PGG S L Sbjct: 240 LFCLSGNVKEPGVFEMPLGTNLKDLLE-AGGGVDG---KFKAVLPGGISSSLLTE---MD 292 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+ L + G+ LG+ AVIV++ T ++ ++ F+ E CG+C+ CREGT Sbjct: 293 VNLDFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAE 352 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ R +G + E++ L E+ + ++ C LG A I+NF+ ++ + Sbjct: 353 ILSRFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGEFLAQVRK 410 >gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 616 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 147/405 (36%), Positives = 222/405 (54%), Gaps = 9/405 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + +S+ D ++ G + + + E G +I+EVK S L GRGGA F G+KW Sbjct: 208 LLKRVGKVDPESIDDYLATGGYAGLRRAFEMGPGKVISEVKDSRLMGRGGAAFPAGIKWE 267 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 K + P YLV NADESEPGT KDR I+ +P LIE IA +AI A +IY+RG Sbjct: 268 STAKQPA-TPRYLVCNADESEPGTFKDRAILEGDPFALIESMTIAGYAISAERGYIYLRG 326 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L A+ G LG N G+ ++ + GAGAYICGEETA+ S+EG + Sbjct: 327 EYPRAYRMLSNAIARARGRGFLGDNVMGTGWSFELEIRRGAGAYICGEETAIFNSIEGYR 386 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+ PT VNNVE++ VP I++ G + Y+ G E + G KLF +SG Sbjct: 387 GEPRSKPPFPFEAGLFNKPTVVNNVETLCNVPLIMQMGGAEYAKIGTEGSTGPKLFCVSG 446 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 ++ P E T ++I+ G L AV+ GG++ + A ++ + ++ Sbjct: 447 NLVRPGVYEVPFGATLGDVIKLAGG--VPQGRKLQAVLLGGAAGVFVRADELH-IPLTFE 503 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G + + LG+ V+ D + D+ + R++ F++ ESCGQC PCR GT + R++ Sbjct: 504 GARANNATLGSGVVLAFDDTVDLPAILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIM 563 Query: 367 KGIAQ----KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 + +R + LL +V ++ +IC LG AA ++ I Sbjct: 564 RNGRDTAAKERNVGLLRDVGLVMKDSSICGLGQAAWNAVESAIDR 608 >gi|126463500|ref|YP_001044614.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] gi|126105164|gb|ABN77842.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] Length = 509 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 145/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%) Query: 5 QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 Q R+ G+ L + + G ++ + + + R I+ EV SGLRGRGGAGF TG Sbjct: 97 QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTG 156 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW + + + Y+V NADE + GT DR IM +P TLIEG IA A GA ++ Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 Y+R E+ + + AV A GLLG + G D+ + GAGAY+CGEET+LL SL Sbjct: 216 YMRSEYPDAVQVMGEAVRIARAHGLLGPSVMGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK+G R KPP PA G G PT VNNV S+A +P I ++GA++Y FG +RGT Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 I+G+V E + ++ ++++ GG G + AV GG P + Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 Y+ +G A ++V D + D++K F ESCG+CTPCR G M + Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +R+ +G I LL ++ ++ ++CALG +P+ + +F Sbjct: 454 DRIARG--DTAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501 >gi|195952596|ref|YP_002120886.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1] gi|195932208|gb|ACG56908.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1] Length = 425 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 158/395 (40%), Positives = 228/395 (57%), Gaps = 11/395 (2%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + + + + ++K L + I+ EV S LRGRGGAGF TG KW F + + P Sbjct: 30 DIKEYLKDNGYLALEKALSMKPEDIVEEVDNSNLRGRGGAGFPTGRKWKFCLQNKA--PR 87 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 YLV NADESEPGT KDR I+ +PH L+EG +I+++A+G + A+IY+RGE+ L+ Sbjct: 88 YLVCNADESEPGTFKDRLIIERDPHLLLEGMIISAYALGVNRAYIYIRGEYPAGYYILRN 147 Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E G LG N G+D++I+V GAGAYICGEETALL S+EGK+G PRLKPPFP Sbjct: 148 AIEEAKKEGFLGKNILNSGFDLEILVSRGAGAYICGEETALLNSIEGKRGHPRLKPPFPV 207 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT VNNVE+++ +P I+ G+ Y G + G KLF +SG V P E Sbjct: 208 QVGLWGRPTVVNNVETLSNIPIIINLGSEGYKEIGPMDYPGPKLFPVSGKVKKPGVYELP 267 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 M+ T E+I K+ GG ++ CL ++ MDY GT Sbjct: 268 MNTTLREVIFKYAGGTIRNVPIKAVFS---GALDCLSVSEL-DTPMDYSQF----GFGGT 319 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VIV+ DI+ A ++++ FY+HE+CG CTPCR G +++++ K A + + Sbjct: 320 GTVIVLTEEDDIVNACYKIAEFYEHETCGFCTPCRIGCHEQAYLLDKIEKDEATPKTWEG 379 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L V+K I+ ++C LG A+ I+ ++ F Sbjct: 380 LRFVTKYIQPTSVCGLGAVASRLIKQAMEKFPEDF 414 >gi|24653819|ref|NP_725449.1| CG8102, isoform A [Drosophila melanogaster] gi|7303085|gb|AAF58152.1| CG8102, isoform A [Drosophila melanogaster] Length = 481 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 193/423 (45%), Positives = 259/423 (61%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ +V SGLRGRGGAGF Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 476 Query: 419 YHR 421 Y + Sbjct: 477 YAK 479 >gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 621 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 146/420 (34%), Positives = 222/420 (52%), Gaps = 5/420 (1%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 QDR + + + + L DS+ G + + L + ++ V SGLRGRGG G Sbjct: 129 FYAGQDRQVLRHCGHIDPRELRDSVRAGGYRALGLALGMEPEDVVKAVSDSGLRGRGGGG 188 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + +++ N DE +PG DR +M +PH+++EG +I + A+GA Sbjct: 189 FPTGIKWDSCRRAK-GKHRFVLANGDEGDPGAFMDRSLMEGDPHSVLEGMIIGAHAVGAR 247 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 F+YVR E+ E L A+ + +GLLG N G D D+ V G GA++CGE +AL Sbjct: 248 KGFLYVRAEYPLAVEHLNRAIAQAREAGLLGRNILGSGLDFDLEVCRGGGAFVCGESSAL 307 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 + S+EG+ G+PR+K GL+ CPT +NNVE+ A VP ++ +GA Y G + + G Sbjct: 308 MASIEGRAGEPRVKYIRSTERGLWDCPTVLNNVETWANVPLVIPQGAQAYRTKGTDGSPG 367 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK+FS+ G V + VE M T E+I G G AV GG S CLP ++ Sbjct: 368 TKVFSLVGKVRHSGLVEVPMGTTLREIIFGLGG-GVLGRGRFKAVQTGGPSGGCLPEDRL 426 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 +D+D L E GS +G+ +IVMD T ++ F ESCG+C PCREG + Sbjct: 427 -DIPVDFDRLVEEGSMMGSGGMIVMDHRTCMVDVARYFVHFLAEESCGKCVPCREGLQAI 485 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + ++ L +G + + L E+ + + +C LG AA P+ ++ F E +Q Sbjct: 486 LDILNDLTQGRGRPGDGRRLEEMGRALSDTALCGLGQTAANPVLSTLRFFPEEYREHEEQ 545 >gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum ferrodiazotrophum] Length = 624 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 170/423 (40%), Positives = 245/423 (57%), Gaps = 7/423 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60 L ++ +FT L + + S G + + +I+ K R I+NE+++SGL GRGG F Sbjct: 172 LVNEPVVFTGLKAKETLWIDRYESAGGYAMLREIMAAKDRTRIMNEIESSGLSGRGGGAF 231 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 K + K Y+V NADE EPGT KDR IM +PH+ IEG ++AS+AI A Sbjct: 232 PMAPKLKNVMKNPKPH--YVVANADEGEPGTFKDRYIMERDPHSFIEGMILASYAIDADA 289 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ + L A+DE A G LG N G+D DI ++ G GAYICGE+++LL Sbjct: 290 GYIYLREEYPHSYQILLKALDEARAKGYLGKNILGTGWDYDIRIYRGGGAYICGEDSSLL 349 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G PR KPP +++GL+ PT VNNVE+ A +P IL+ G +WY G E + GT Sbjct: 350 NSLEGKRGTPRNKPPRLSDIGLWKKPTDVNNVETFAAIPRILKEGGAWYKSLGDEKSAGT 409 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF +SG++ P E + T LIE+ GG+ G AV+P GS+ L QM Sbjct: 410 KLFCLSGNIRRPGIYEVPLGATLRHLIEELGGGVPEGRK-FKAVLPAGSASSMLYPVQM- 467 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY +K G+ LG A++IVMD S ++ + +S FY HESCGQCTPCR+GT + Sbjct: 468 DMALDYPTVKAAGAFLGAASLIVMDDSVCMVDLAFWMSGFYHHESCGQCTPCRDGTEDIH 527 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 V++++V G + ++ + + + + +IC LG +A I++F E I Sbjct: 528 EVLQKIVMGEGELSHLEFIKSLGEYMRTASICGLGTSAPNIPISSIEHFEEEWREHILD- 586 Query: 420 HRC 422 HRC Sbjct: 587 HRC 589 >gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680] gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces avermitilis MA-4680] Length = 607 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 158/403 (39%), Positives = 227/403 (56%), Gaps = 10/403 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + SL D + G + + + E G +I EV +GL GRGGA F TG KW Sbjct: 207 LLRRVGVVDPASLDDYRAHGGYAALRRAFELGPAEVIREVTDAGLVGRGGAAFPTGRKWQ 266 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 DRPH+LV NADESEPGT KDR IM +P+ L+E IA++A+GAH ++Y+RG Sbjct: 267 ATASRP-DRPHHLVCNADESEPGTFKDRVIMEGDPYALVESMTIAAYAVGAHQGYLYLRG 325 Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R E + A+++ A GLLG + GY DI + GAGAYICGEETAL S+EG + Sbjct: 326 EYPRALERMSHAIEQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYR 385 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPPFP GL+G PT NNVE++ V +L GA Y+ G + G KLF +SG Sbjct: 386 GEPRSKPPFPVEKGLFGRPTAENNVETLVNVLPVLTMGAQAYAAIGTAKSTGPKLFCVSG 445 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V+ P E T EL+E + L AV+ GG++ + + R + ++ Sbjct: 446 SVDRPGVYELPFGATLGELLELAG-----VRERLRAVLLGGAAGGFVRPDE-RDIPLTFE 499 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G ++ G+ LG+ V+ D + + + + R++ F++ ESCGQC PCR GT + R+V Sbjct: 500 GTRQAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIV 559 Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 G A +I LL EV + + +IC LG +A ++ I Sbjct: 560 ARTGAAAADDIALLREVGRAMRDASICGLGQSAWNAVESAIDR 602 >gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] Length = 581 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 155/403 (38%), Positives = 219/403 (54%), Gaps = 8/403 (1%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+ + + SL D + G + + L G+ +I EV +GL GRGGA F TG KW Sbjct: 180 RLLRRVGVVDPSSLDDYRATGGYAALRNALRMGQAAVIREVTDAGLLGRGGAAFPTGRKW 239 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + PHYLV NADESEPGT KDR ++ +P L+E IA+FAIGA ++Y+R Sbjct: 240 AATAAQPAG-PHYLVCNADESEPGTFKDRVLLEGDPFALVEAMTIAAFAIGARQGYVYLR 298 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE+ R L+ A+D G LG + G+ DI + GAGAYICGEETA+ S+EG Sbjct: 299 GEYPRALRLLRNALDVGRERGFLGVDVMGHAGFSFDIEIRRGAGAYICGEETAIFNSIEG 358 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +G+PR KPPFP GL+G PT VNNVE++ VP IL GA+ Y G E + G KLF + Sbjct: 359 FRGEPRTKPPFPVEQGLFGKPTVVNNVETLVNVPLILTEGAAAYRSIGTEASAGPKLFCL 418 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG+V P E T EL+ G +L AV+ GG++ + ++ + Sbjct: 419 SGNVERPGVYEVPFGATLRELLALAGG--VPEGRSLRAVLLGGAAGGFVRPDEL-DLPLT 475 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 ++ + + LG+ V+V+D D+ + R++ F++ ESCGQC PCR GT + R Sbjct: 476 FEDARAAKTTLGSGVVLVLDDLADLGGFLLRIAEFFRDESCGQCVPCRIGTVRQEEAIRR 535 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 ++ E LL EV + +IC LG A I+ I Sbjct: 536 VLAAG--SEEQPLLREVGGVMRDSSICGLGQTAWNAIESAIDR 576 >gi|301058595|ref|ZP_07199600.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium NaphS2] gi|300447327|gb|EFK11087.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium NaphS2] Length = 473 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 158/455 (34%), Positives = 224/455 (49%), Gaps = 48/455 (10%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-- 73 Q L + + G + + L +I V+ S L GRGGAGFS G KWSF+P Sbjct: 16 QPLGLGEYEAVGGYQGLRAALTMEPHQVIKVVQDSTLGGRGGAGFSAGRKWSFVPDEDLH 75 Query: 74 ----------------------------------------SDRPHYLVVNADESEPGTCK 93 + Y+V NADE EPG K Sbjct: 76 ERHVFPHEMVAMIEEPDQWGHVSAGFTTGIKWSFMPKGEHAASQAYVVANADEMEPGVFK 135 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 DR +M PH LIEG +I + AIGA+ +I++R + + ++ A++E + +G LG + Sbjct: 136 DRVLMEGNPHQLIEGMLITAHAIGANTGYIFLRWAYKKAARCIEKAINEAHEAGYLGEHI 195 Query: 154 -KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 + VDI +H AG YICGE TALL SLEG++ PR KPP A VGL+G PT VNNVE Sbjct: 196 LGTDFGVDIFLHTSAGRYICGEATALLNSLEGRRANPRAKPPHTAAVGLWGRPTDVNNVE 255 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 +++ VP IL+ GA WY + GTK++ +SG V P E M T E+IE+H GG Sbjct: 256 TLSNVPHILKNGADWYKDLSLTDEGGTKIYGVSGRVKGPGWWELPMGTTAREIIEEHAGG 315 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + G+ L +PGG+S L A + MD + +GS +G +I++D T + Sbjct: 316 MADGY-RLRGFLPGGASTEFLLAEHL-DVPMDVKSVSALGSRMGCGTMIILDDKTCPVGM 373 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI--EGRTI 390 + + F+ ESCG CTPCREG W RV+ + G +++ L ++ I T Sbjct: 374 VNNVMHFFARESCGWCTPCREGLPWTSRVLSAIEAGEGHPEDMERLRSHARWIGGPDSTF 433 Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 CAL A P+Q + F E I C ++ Sbjct: 434 CALAPGAMEPLQSALTYFEDDFREHIRLGC-CPWR 467 >gi|195027493|ref|XP_001986617.1| GH21461 [Drosophila grimshawi] gi|193902617|gb|EDW01484.1| GH21461 [Drosophila grimshawi] Length = 546 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 197/421 (46%), Positives = 263/421 (62%), Gaps = 3/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W +L+ G +WI++EVK SGLRGRGG+G+ Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW F+ KV + L++N E EPGTCKDR+I+RHEPH +IEGC++A +A+G Sbjct: 186 TGNKWEFLQKVNA-NNKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG N+ G DI V G Y+ GEETAL+ Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PP+ G + P V N E++AVVPTILRRGA W++G GR N GTK Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSI GHV +PCTVEE MS+ E+I+ H GG+ GGW+NLL V PGG S P + G Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L++ GS GT +IV+ + D + + R FY ++C QCTPCR+G W+ + Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQRSIEFYMKQTCKQCTPCRDGAIWLPK 483 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 ++ KG + + ID + + K + G TIC L D+ A GLI +F P I++RI+ + Sbjct: 484 ILRNFTKGESVPQMIDFVAVICKTMIGTTICGLSDSQANVAMGLITHFAPHIQQRIEAFG 543 Query: 421 R 421 + Sbjct: 544 K 544 >gi|325000957|ref|ZP_08122069.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1] Length = 499 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 154/404 (38%), Positives = 229/404 (56%), Gaps = 10/404 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+ + + SL D SRG + + + ++ G +I E+K S L GRGGA F TG+KW Sbjct: 81 RLLRRVGVVDPSSLDDYRSRGGYAALRRAVDLGPTRVIAELKDSSLTGRGGAAFPTGVKW 140 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + +RPH+LV NADESEPGT KDR +M +P L+E IA + GA +Y+R Sbjct: 141 EGVAQAP-ERPHHLVCNADESEPGTFKDRVLMEGDPFGLVEAMTIAGYVTGATVGHLYIR 199 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ LQ A+ A GLLG + G+ DI + GAGAYICGEETALLES+EG Sbjct: 200 GEYPLATRRLQDAIAAARARGLLGDDVMGEGFAFDIDLRRGAGAYICGEETALLESIEGY 259 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR KPPFPA+VGL+G PT +NNVE++ V +L G ++ G + G+KLF +S Sbjct: 260 RGEPRNKPPFPASVGLFGKPTAINNVETLYNVLEVLDIGGQAFAVVGGGRSTGSKLFCVS 319 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E T +L++ G +L V+ GG++ + G + ++ Sbjct: 320 GAVGTPGVYEVDFGTTLRQLLDLAGG----VRGSLRTVLLGGAAGGFVLPGDL-DVVLTL 374 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G +++G+ LG+ V+V D D+ + R++ F++ ESCGQC PCR GT + RL Sbjct: 375 EGARDIGATLGSGVVLVFDEDADLTGTLRRIAAFFRDESCGQCVPCRVGTVRQEEALARL 434 Query: 366 VKGIA---QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 + ++ EI LL ++++ + +IC LG A + I Sbjct: 435 ERNAPIGSRETEIALLDDLARVMRDASICGLGQTAPSAVTSAID 478 >gi|90579193|ref|ZP_01235003.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14] gi|90440026|gb|EAS65207.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14] Length = 427 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 170/415 (40%), Positives = 256/415 (61%), Gaps = 5/415 (1%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N + + + ++ G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+ Sbjct: 7 RNFHHPKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFL 66 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 K S P YLVVN DESEPG+ KDR ++ +PHT++EG + +S+ +GA AF+++RGE+ Sbjct: 67 AKDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEY 125 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + L+ AV E A+GL+G N G+D+D+ VH AG YICGEETALL +LEG +G Sbjct: 126 REGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGN 185 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFP GL+G PT VNNVESI +P I+ +GA W+ G+ + G+ ++ +SG V Sbjct: 186 PRSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPV 245 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + T ELI +H GG+ + L+ +PGG+S + + +D+DG Sbjct: 246 KKPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHL-DVPLDWDGP 303 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 +GS LGT +IVMD + I + L+ F+ ESCG CTPCR+G +++ V+++ G Sbjct: 304 ATVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETG 363 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 A +++DLL+E+ + I T CAL A PI +K+F+ + E I + RC Sbjct: 364 EATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFESHI-EGQRCT 417 >gi|119504734|ref|ZP_01626812.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium HTCC2080] gi|119459339|gb|EAW40436.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium HTCC2080] Length = 526 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 149/423 (35%), Positives = 221/423 (52%), Gaps = 14/423 (3%) Query: 2 LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R I+ + + D +S G + + LE ++ V SGLRGRGGAGF Sbjct: 89 LACQNRWIYERVGIIDPVDPDDYVSHGGMAGLQRALEMSPMSVVQAVTESGLRGRGGAGF 148 Query: 61 STGMKWSFMPKVCS----------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110 TG+KW + + R Y+ VNADE + GT DR +M +P L+EG Sbjct: 149 PTGIKWQTVAEQAPVPHKGDPVDAPRHKYICVNADEGDSGTFADRMLMEGDPFCLLEGMA 208 Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGA 169 IA+ A+GA IY+R E+ + A+++ A G LG + + D+ + GAG+ Sbjct: 209 IAAHAVGADRGMIYLRSEYPAAIAVMSDAIEKARARGWLGESILGSSCNFDVTIRVGAGS 268 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 Y+CGEETA+LESLEG++G R KPP PA GL+G PT +NNV +IA VP+IL RG Y+ Sbjct: 269 YVCGEETAMLESLEGRRGTVRAKPPLPAIEGLFGTPTVINNVLTIASVPSILARGPEAYA 328 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 G+E +RGT++F ++G++ VE + I+ ELI G + G L AV GG Sbjct: 329 ELGQERSRGTQVFQLAGNIARGGIVEVAFGISAHELIFGLGQGTKSG-KPLKAVQVGGPL 387 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 L A ++ M Y+ L G+ LG ++V D S D+ + F ESCG+CT Sbjct: 388 GAYLTADALQ-VPMAYESLAAEGAMLGHGGLVVFDDSVDMAEQARFAMEFCVEESCGKCT 446 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 PCR G + V++ L+ A + LL ++ + ++CA+G P+ + F Sbjct: 447 PCRIGAVRGVEVIDDLLASDAPENAEQLLRDLCDVMTQGSLCAMGGLTPQPVLSALDQFP 506 Query: 410 PLI 412 Sbjct: 507 EDF 509 >gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 626 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 149/400 (37%), Positives = 226/400 (56%), Gaps = 10/400 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+ + + SL D + G ++ + + +E G ++ E+K S L GRGGA F TG+KW Sbjct: 209 RLLRRIGVVDPGSLDDYRAHGGYEALRRAVELGASRVVRELKDSALTGRGGAAFPTGVKW 268 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + RPHYLV NADESEPGT KDR +M ++P L+E IA +A G ++Y+R Sbjct: 269 EGVA-TAQVRPHYLVCNADESEPGTFKDRVLMEYDPFGLVEAMTIAGWATGCERGYLYIR 327 Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 GE+ L+ A++E G LG++ G+ DI + GAGAYICGEETALL S+EG Sbjct: 328 GEYPLATRRLEHAIEEARRRGFLGADVLGEGFTFDIELRRGAGAYICGEETALLNSIEGF 387 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G+PR KPPFP+ GL+G PT +NNVE++ V +L G ++ G E + GTKLF ++ Sbjct: 388 RGEPRNKPPFPSVSGLFGKPTVINNVETLYNVLQVLDVGGPAFASVGAERSTGTKLFCVA 447 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P E T EL+ G L ++ GG++ + Q+ + Sbjct: 448 GSVAVPGVYEVEFGTTLRELLTLAGG----LRGELRTILLGGAAGGFVMPDQL-DVPLTL 502 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 +G +E+G+ LG+ V+ D D++ + R++ F++ ESCGQC PCR GT + RL Sbjct: 503 EGAREIGATLGSGVVLAFDTDADLVATLRRIAAFFRDESCGQCVPCRVGTVRQEEALARL 562 Query: 366 VKG---IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 +G ++ E+ LL ++++ + +IC LG A +Q Sbjct: 563 ERGAPLGDRETELALLDDLARVMRDASICGLGQTAPAAVQ 602 >gi|195486237|ref|XP_002091420.1| GE12249 [Drosophila yakuba] gi|194177521|gb|EDW91132.1| GE12249 [Drosophila yakuba] Length = 481 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 193/425 (45%), Positives = 258/425 (60%), Gaps = 4/425 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W +LE+G +WI+ ++ SGLRGRGGAGF Sbjct: 58 LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWIMEQIGKSGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S + P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSAKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG + G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGDSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 297 KLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPPTAG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L++ GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLQDAGSGFGCGAVIVMTKDCDPLAVMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVGVAESLVRMFSRQIEERLLK 476 Query: 419 YHRCN 423 Y + + Sbjct: 477 YAKAS 481 >gi|84499616|ref|ZP_00997904.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Oceanicola batsensis HTCC2597] gi|84392760|gb|EAQ04971.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa) [Oceanicola batsensis HTCC2597] Length = 505 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 145/414 (35%), Positives = 206/414 (49%), Gaps = 7/414 (1%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ G+ SL+D G + + L I+ EVK SGLRGRGGAG Sbjct: 89 FLAGQTRLTFARCGITDPLSLADYEGHGGLAGLRRALGMEAAAIVEEVKTSGLRGRGGAG 148 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + ++ Y+V NADE + GT DR IM +P +LIEG +IA GA Sbjct: 149 FPTGIKWDTVRQARAE-QKYIVCNADEGDSGTFADRMIMEGDPFSLIEGMIIAGLGTGAT 207 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 F+Y+R E+ + A+ GLLG + G ++ V GAGAY+CGEET+L Sbjct: 208 KGFVYIRSEYPDAIAIMDRAIRLARDGGLLGPDILGSGRAFEMEVRIGAGAYVCGEETSL 267 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 L SLEGK+G R KPP PA G +G PT VNNV S+A +P I +GA Y+ FG +RG Sbjct: 268 LNSLEGKRGVVRAKPPLPALQGAFGRPTVVNNVLSLATIPVIFEKGAQHYADFGLGRSRG 327 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T I+G+V + E + + L+ + GG G + AV GG A Sbjct: 328 TMPIQIAGNVQHGGLYETAFGLPLGTLVNEIAGGTASGRP-VKAVQVGGPLGAYF-APHQ 385 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 Y+ G +G A ++V D + D+ F ESCG+CTPCR G Sbjct: 386 FDTPFGYEEFDGAGGLIGHAGIVVFDDTADMAGMARFAMEFCAVESCGKCTPCRIGAVRG 445 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++R+ G I L ++ + + ++CALG +P+ + F Sbjct: 446 VETIDRIAAGDPDATAI--LTDLCETMTAGSLCALGGFTPYPVMSALHLFPEDF 497 >gi|194882859|ref|XP_001975527.1| GG22361 [Drosophila erecta] gi|190658714|gb|EDV55927.1| GG22361 [Drosophila erecta] Length = 481 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 192/423 (45%), Positives = 255/423 (60%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W +LE+G +W++ E+ GLRGRGGAGF Sbjct: 58 LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWMMKEISKCGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P L+VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMLIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG ++ D++V G Y+CGEETAL+ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGDSACGTDIKFDVMVQRG-DRYLCGEETALI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVVNAESIAVVPTILRRGSQWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ ISG VN PCTVEE MSI +LIE+H GG++GGWD L AV PGG S P L Sbjct: 297 KLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDKLAAVFPGGLSTPLLDPSTAG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIV+ + D + + R F++ +C QCT CR+G W+ Sbjct: 357 KVLMDFDSLADAGSGFGCGAVIVISKDCDPLAVMLRSIQFFEKHTCKQCTYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVAVAESLVRMFSRQIEERLLK 476 Query: 419 YHR 421 Y + Sbjct: 477 YAK 479 >gi|195334585|ref|XP_002033958.1| GM20146 [Drosophila sechellia] gi|194125928|gb|EDW47971.1| GM20146 [Drosophila sechellia] Length = 481 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ ++ SGLRGRGGAGF Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P ++VN E EPGTCKDR+I+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGW+NL AV PGG S P L Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476 Query: 419 YHR 421 Y + Sbjct: 477 YAK 479 >gi|195583606|ref|XP_002081608.1| GD25625 [Drosophila simulans] gi|194193617|gb|EDX07193.1| GD25625 [Drosophila simulans] Length = 481 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ ++ SGLRGRGGAGF Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW F+ + S++ P ++VN E EPGTCKDR+I+RHEPH LIEG ++ A+G Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGW+NL AV PGG S P L Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476 Query: 419 YHR 421 Y + Sbjct: 477 YAK 479 >gi|148554394|ref|YP_001261976.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1] gi|148499584|gb|ABQ67838.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1] Length = 516 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 144/433 (33%), Positives = 218/433 (50%), Gaps = 33/433 (7%) Query: 1 MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R G+ L+ ++ G W ++ +++ +KASGLRGRGGAG Sbjct: 85 FFARQQRFTFARCGINDPLDLAAYVASGGWRGLEAARAMAPQAVVDAIKASGLRGRGGAG 144 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + ++V NADE + GT DR +M +P+ LIEG IA+ A+GA Sbjct: 145 FPTGIKWQTVL-DAGPAEKFVVCNADEGDSGTFADRMLMEGDPYCLIEGMAIAAHAVGAD 203 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ ++Q A++ ++ LL + V GAGAY+CGEETALL Sbjct: 204 HGYVYIRSEYPFAIRAMQGAIE--RSAALLA-------PFTLEVRVGAGAYVCGEETALL 254 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +S+EGK+GQ R KPP PA GL+G PT +NNV S+A VP IL GA Y+ G +RGT Sbjct: 255 DSIEGKRGQVRAKPPLPAIEGLFGQPTVINNVLSLAAVPFILSEGAEAYAAVGLGRSRGT 314 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G++ E I+ EL+E GG G + AV GG LP M Sbjct: 315 MPVQLAGNIRNGGLFEIGFGISLGELVETVGGGTASGRP-VRAVQVGGPLGAYLPPS-MF 372 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ G+ +G A + V D + D+ + F ESCG+CTPCR G+ + Sbjct: 373 DLPFDYESFAAAGALIGHAGITVFDDTVDMAQMARFAMEFCAVESCGKCTPCRIGSTRGV 432 Query: 360 RVMERLVKG--------------------IAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ++R++ G + ++EI LL ++ ++ ++CALG + Sbjct: 433 ETIDRIIAGGRGGDRVEALPQMRNAKARQKSVEQEIALLRDLCDTMKYGSLCALGGFTPY 492 Query: 400 PIQGLIKNFRPLI 412 P+ + +F Sbjct: 493 PVLSALNHFPEDF 505 >gi|89073313|ref|ZP_01159843.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34] gi|89051023|gb|EAR56487.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34] Length = 427 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 169/415 (40%), Positives = 256/415 (61%), Gaps = 5/415 (1%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N + + + ++ G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+ Sbjct: 7 RNFHHSKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFL 66 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 K S P YLVVN DESEPG+ KDR ++ +PHT++EG + +S+ +GA AF+++RGE+ Sbjct: 67 AKDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEY 125 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + L+ AV E A+GL+G N G+D+D+ VH AG YICGEETALL +LEG +G Sbjct: 126 REGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGN 185 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR KPPFP GL+G PT VNNVESI +P I+ +GA W+ G+ + G+ ++ +SG V Sbjct: 186 PRSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPV 245 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + T ELI +H GG+ + L+ +PGG+S + + +D+DG Sbjct: 246 KKPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHL-DIPLDWDGP 303 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 +GS LGT +IVMD + I + L+ F+ ESCG CTPCR+G +++ V+++ G Sbjct: 304 ATVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETG 363 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 A +++DLL+E+ + I T CAL A PI +K+F+ + + I + RC Sbjct: 364 EATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFDSHI-EGQRCT 417 >gi|254442515|ref|ZP_05055991.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Verrucomicrobiae bacterium DG1235] gi|198256823|gb|EDY81131.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Verrucomicrobiae bacterium DG1235] Length = 454 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 184/433 (42%), Positives = 246/433 (56%), Gaps = 25/433 (5%) Query: 3 TDQDRIFTNLYGLQG---KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 +Q I Y + S+ + G +D + K + I++EVK S LRGRGGAG Sbjct: 6 KEQRLILK--YADEPGYTPSIDSYLEHGGYDMLKKAVTMEPQAIMDEVKKSTLRGRGGAG 63 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KWSF+ + S +P YLV N DESEPGT KDR I+ +PH LIEG +I++FA Sbjct: 64 FPCGLKWSFVDR-KSGKPIYLVCNCDESEPGTFKDRQIVHKDPHQLIEGMMISAFANNVA 122 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 +FIY+R E + L A+ E G +G N GY DI+VH GA AYICGEET L Sbjct: 123 KSFIYIREEMPHGAKILDQAILEAKEKGFVGDNVLGSGYSCDIVVHRGAAAYICGEETGL 182 Query: 179 LESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 +ESLEGK+ PR+KPP FPA +GLY CPT VNNVE++ IL GA ++ GR NN Sbjct: 183 IESLEGKRANPRIKPPYFPAVLGLYNCPTIVNNVETLCNAVHILDMGAEAFTKIGRPNNA 242 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP--- 294 GT+++ +SG V P E +T EL+ CGG + A+IPGGSS+ L Sbjct: 243 GTRIWCVSGGVQRPGYYEV-GEMTLGELVYDICGG-PLPGRTIKAIIPGGSSMKILKNGE 300 Query: 295 ------------AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 + +DYDG+ GS G+ ++V+D + I A+ L FY H Sbjct: 301 RYTGKNPDGSEYDWGLEDIPLDYDGIAAAGSMSGSGGMMVLDDTVSIPGALANLMAFYSH 360 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCGQCTPCREG+ W+ ++ R+V A+ ++DL+ +V+ I GRTICA G A AWP+Q Sbjct: 361 ESCGQCTPCREGSLWLKKITSRMVHEQARPEDVDLMLDVAGQIAGRTICAFGFAVAWPVQ 420 Query: 403 GLIKNFRPLIEER 415 I F E Sbjct: 421 SYIAKFEDEFREY 433 >gi|222839394|gb|EEE77731.1| predicted protein [Populus trichocarpa] Length = 391 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 191/366 (52%), Positives = 241/366 (65%), Gaps = 11/366 (3%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61 I+ +L G S+ D +RG + + KIL K +D +I VK SGLRGRGGAGF Sbjct: 30 IYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGFP 88 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ +LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G Sbjct: 89 TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISLG 147 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE E +AA++E A+G LG N + + HHG GAYICGEETALLE Sbjct: 148 YNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALLE 207 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y G+ NN GTK Sbjct: 208 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGTK 267 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG VN P E + F +L+E G L AVIPGGSS P LPA + Sbjct: 268 IFSVSGDVNLPGNYEVPLGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIME 325 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ R Sbjct: 326 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLWR 385 Query: 361 VMERLV 366 V+ R+ Sbjct: 386 VVNRIE 391 >gi|332527763|ref|ZP_08403802.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] gi|332112159|gb|EGJ12135.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2] Length = 490 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 139/414 (33%), Positives = 217/414 (52%), Gaps = 13/414 (3%) Query: 2 LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ GL S++D + G + + II + SGLRGRGGA F Sbjct: 89 LQRQQRLTFARAGLTRPLSIADYEAHGGGAGLRAARAMAPEAIIQAIVDSGLRGRGGAAF 148 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V N DE + GT DR ++ +P LIEG IA+ A+GA Sbjct: 149 PAGIKWRTVAQAAGE-LKYVVCNGDEGDSGTYADRMLLEGDPFLLIEGMAIAARAVGASR 207 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 ++YVR E+ R E A++ A+G L D+ V GAG+Y+CGEETA+LE Sbjct: 208 GYVYVRSEYPRSVEIFGRAIEVARAAGWLD-------GFDMEVRMGAGSYVCGEETAMLE 260 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEG++G R KPP PA GL+G PT +NN+ ++A VPTIL G ++Y FG + GT Sbjct: 261 SLEGRRGVVRAKPPLPAIAGLFGRPTVINNLLTLAAVPTILAEGPAYYRDFGVGRSTGTM 320 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 F ++G++ +P VE + +T EL+ GG G + AV GG +P Sbjct: 321 PFQLAGNLRFPGLVERAFGVTLRELLFDFGGGTASGRP-VKAVQVGGPLGSYVPEEH-WD 378 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +DY+ +G+ LG ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 379 VPLDYEAYAVVGAVLGHGGLVVHDDTADMARLARYAMAFCAQESCGKCTPCRIGSTRGVE 438 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 V+++L+ G ++ + L ++ ++ ++CA+G P+ + ++ Sbjct: 439 VIDKLLAGDDRQESL--LRDLCDTMKHASLCAMGSMTPLPVLSALNHYPEDFRR 490 >gi|312795433|ref|YP_004028355.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) [Burkholderia rhizoxinica HKI 454] gi|312167208|emb|CBW74211.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) (EC 1.2.1.2) [Burkholderia rhizoxinica HKI 454] Length = 540 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 145/417 (34%), Positives = 217/417 (52%), Gaps = 9/417 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L+ Q R+ F+ + + S+ D ++ G + + L+ + +GLRGRGGA F Sbjct: 108 LSKQQRLTFSRIGLIDPLSIDDYVAHGGLQGLHRALQMAPAAACQLLIDAGLRGRGGAAF 167 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + +D Y+V NADE + GT DR M +P LIEG +IA + GA Sbjct: 168 PAGIKWRTVLQAQAD-QKYVVCNADEGDSGTFSDRLSMECDPFGLIEGMIIAGVSTGATQ 226 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 ++YVR E+ L AA+ A+G LG + G D+ V GAGAY+CGEETALL Sbjct: 227 GYLYVRSEYPLAIARLNAAIARARAAGWLGPDVLGSGRAFDLFVAKGAGAYVCGEETALL 286 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA G G PT +NNV ++A VP I RG ++Y FG +RGT Sbjct: 287 ESLEGKRGIVRAKPPLPALAGYRGKPTVINNVITLASVPIIFARGDAFYRDFGMGRSRGT 346 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G+V VE + +T EL+ + GG G A+ GG LP Q Sbjct: 347 LPFQLAGNVQRGGLVEVAFGVTLRELVFEFGGGTASGRPA-RAIQVGGPLGTYLPPSQ-W 404 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G ++V D + ++ + F ESCG+CTPCR G+ Sbjct: 405 DVPLDYEAYTAIGAVVGHGGIVVHDDTANLAELARYAMHFCALESCGKCTPCRIGSTRGA 464 Query: 360 RVMERLV----KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V+++L A+ + LL E+ + ++CA+G +P+ + +F Sbjct: 465 EVIDKLRAPEQDARARTHHVTLLRELCDTMLHGSLCAMGGMTPYPVLSALDHFPEDF 521 >gi|261416516|ref|YP_003250199.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372972|gb|ACX75717.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327301|gb|ADL26502.1| NADH-quinone oxidoreductase, F subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 435 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 180/419 (42%), Positives = 254/419 (60%), Gaps = 5/419 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGF 60 + + ++ T +G + + G + N+ +++ + +I+ V+ S LRGRGGAGF Sbjct: 1 MAECVKVCTQNFGKGAQDIEVYKKLGGYSNISERLFNMSQFELIDYVQRSNLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TGMKWSF+P+ + +P Y+VVNADE E GT KD +M +PH LIEG +IA++A+G+ Sbjct: 61 PTGMKWSFVPR-GTGKPVYIVVNADEGEGGTFKDHFLMLEDPHRLIEGLIIAAWALGSRA 119 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY RGEF+ E+L A+++ YA+G LG N + DI VH GAGAYICGEETAL+ Sbjct: 120 AYIYCRGEFLPCIEALNKALNQAYAAGYLGENICGTKFSFDIFVHRGAGAYICGEETALI 179 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEG+KGQPRLKPPFPA G + PT VNNVE+I +P IL S Y+ G GT Sbjct: 180 NSLEGQKGQPRLKPPFPAVCGAWKSPTCVNNVETIMSLPWILSHDPSDYAKMGTPRAGGT 239 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISG V P E + +I + GG+ GG L AV+PGGSS L A + Sbjct: 240 KVFCISGDVKNPGVYEAPLGTPMMTMINDYAGGVVGG--KLKAVLPGGSSCAPLTAEEAA 297 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A MDY+ L M + G+ A+IV++ + +++ + L FY HESCGQCTPCREGTG + Sbjct: 298 VATMDYECLASMKTMFGSGAMIVINDTHNMVDLLNCLGNFYSHESCGQCTPCREGTGLLH 357 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 R++ ++V G +++L+ +S G TIC L + P+ FR +E I + Sbjct: 358 RILNQMVAGNGHDGDVELMQSLSSGFGGVTICPLSISLGGPVSSYTAKFRADFDEYIAK 416 >gi|92115243|ref|YP_575171.1| NADH-quinone oxidoreductase, F subunit [Chromohalobacter salexigens DSM 3043] gi|91798333|gb|ABE60472.1| NADH dehydrogenase subunit F [Chromohalobacter salexigens DSM 3043] Length = 446 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 160/406 (39%), Positives = 230/406 (56%), Gaps = 8/406 (1%) Query: 20 LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L + + +V++ + +I E+K + LRGRGG GFS G+KWS + Sbjct: 31 LEAYREQQGYASVERAFRDLTSKTLIEELKTANLRGRGGGGFSAGLKWSLTVQGEGIPRG 90 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE EPGT KDR ++ +PH LIEG ++A FA A+ +I++RGE++ ++Q Sbjct: 91 YIVCNADEMEPGTFKDRLLLEQQPHLLIEGMILAGFANNAYQGYIFMRGEYVDAARTVQR 150 Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+DE A+G LG + + G+D DI +H GAG YICGEETAL+ SLEGK+ PR KPPFP Sbjct: 151 ALDEARAAGWLGRDVAGSGWDFDIALHTGAGRYICGEETALINSLEGKRANPRAKPPFPG 210 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255 G +G PT VNNVE++ VP+I+ GA WY G G+ + GTKL+ +SG V P E Sbjct: 211 QSGAWGKPTVVNNVETLCNVPSIVLHGADWYQGLSQGKSGDGGTKLYGVSGKVKRPGLWE 270 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M EL+E+ G L +PGG S L + A +D+D + GS L Sbjct: 271 LPMGTPATELMERAGGM--REGHTLKTWLPGGGSTGFLLPEHLELA-LDFDTIGNAGSRL 327 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT + V+ ++ L F+ ESCG CTPCR+G W +++++ L G ++ +I Sbjct: 328 GTGLIAVVADDQSVVSLTRNLEEFFARESCGWCTPCRDGLPWSVKLLQALEAGEGERGDI 387 Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 DLL ++ ++ GRT CA AA P+ I FR E + + Sbjct: 388 DLLESLAVDLGPGRTFCAHAPGAAMPLASAIHYFRAEFERGVTRGQ 433 >gi|226939218|ref|YP_002794289.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9] gi|226714142|gb|ACO73280.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9] Length = 433 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 137/414 (33%), Positives = 221/414 (53%), Gaps = 5/414 (1%) Query: 1 MLTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ GL SLSD ++ G + + + L G D + ++ SGLRGRGGA Sbjct: 17 FLARQQRLVFARAGLTRPLSLSDYLATGGYAGLQRWLSTGADAFLQALETSGLRGRGGAA 76 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F +KW + + + ++V NADE + GT DR ++ +P+ LIEG +A+ +GA Sbjct: 77 FPAHIKWQGVRRAHA-VEKFVVCNADEGDSGTFADRMLLEGDPYALIEGITLAALTVGAR 135 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 ++Y+R E+ R E ++ A+ + +G LG N G ++ V GAGAYICGEE+AL Sbjct: 136 QGYVYIRSEYPRAIEHMREAIAQARQAGYLGDNILGNGQAFELEVRCGAGAYICGEESAL 195 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LES+EG++G R +PP P+ GL+G PT V+NV ++A +P I R G +S +G E +RG Sbjct: 196 LESIEGRRGMVRPRPPLPSEAGLFGQPTLVHNVMTLAAIPFIAREGGEAFSRYGSERSRG 255 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T ++G++ VE + + EL+ GG G ++ AV GG + Sbjct: 256 TLAVQLAGNLRQTGLVETAFGLRLSELLHDFGGGSASG-RSIKAVQIGGPLGAWVAPAD- 313 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 ++DY+ G+ +G V+ +D D+ F ESCG+CTPCR GT Sbjct: 314 FDLLLDYEAFVARGALVGHGGVVAVDDRADLADLARLALHFCAEESCGKCTPCRVGTVRA 373 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++R+ G+ +++LL E+ + + ++CALG +P+ ++ F Sbjct: 374 GELVDRIRTGLHPDDDVELLTELCQTMRDASLCALGGMVHFPVLSALRQFPRDF 427 >gi|119385582|ref|YP_916637.1| NADH dehydrogenase (quinone) [Paracoccus denitrificans PD1222] gi|119376177|gb|ABL70941.1| formate dehydrogenase beta subunit [Paracoccus denitrificans PD1222] Length = 513 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 144/413 (34%), Positives = 218/413 (52%), Gaps = 7/413 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 + Q R+ F + + S+S+ + G + + +E G + I+ EV SGLRGRGGAGF Sbjct: 89 MKAQTRLTFARVGVIDPLSVSEYEAHGGLVGLSRAIEIGPERIVEEVTESGLRGRGGAGF 148 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW + + Y+V NADE + G+ DR +M +P LIEG IA A GA Sbjct: 149 PTGIKWKTVAGAKA-ARKYIVCNADEGDSGSFADRMLMEGDPLVLIEGMAIAGIATGAVQ 207 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ ++AA+ + +G+LG S + D+ V GAGAY+CGEET+LL Sbjct: 208 GYVYIRSEYPDAIRLMEAAIGKARQAGILGQSVLGSAHAYDMEVRVGAGAYVCGEETSLL 267 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA G G PT VNNV S+A VP IL G + Y+ G ++GT Sbjct: 268 NSLEGKRGVVRAKPPIPALEGFLGRPTVVNNVISLASVPWILSHGGAEYAKLGIGRSKGT 327 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V Y E + ++ ++I + GG G + A GG +P Sbjct: 328 IPIQIAGNVKYGGLFEAAFGMSLGQIINEVGGGTASGRP-VKAAQVGGPLGSYIP-HWNF 385 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 Y+ L LG A + V D + D++K F ESCG+CTPCR G+ + Sbjct: 386 DVPFGYEELAGKEGLLGHAGITVFDDTADMLKLARFAMEFCAVESCGKCTPCRIGSIRGV 445 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++R+ +G + I +L ++ ++ ++CALG A +P+ + +F Sbjct: 446 ETIDRIAQG--DETGIAILTDLCNTMKWGSLCALGGFAPFPVMSALTHFPDDF 496 >gi|297569386|ref|YP_003690730.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2] gi|296925301|gb|ADH86111.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2] Length = 601 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 145/442 (32%), Positives = 237/442 (53%), Gaps = 35/442 (7%) Query: 1 MLTDQDRI----FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGR 55 Q ++ F N + + + ++ G + + L + II+E+ SGLRGR Sbjct: 140 FFRRQVKVVLEQFEN---IDPERIESYLAAGGYRALLDCLHHRRPVEIIDEITRSGLRGR 196 Query: 56 GGAGFSTGMKWSFMPKV----------------------CSDRPHYLVVNADESEPGTCK 93 GG G+ G+KWS + K Y++ NADE +PG Sbjct: 197 GGGGYPVGLKWSTVAKAGAFVPQAGRSSRQSAGATAADRPDGPRKYVICNADEGDPGAFM 256 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 DR ++ PH ++EG IA++A+GA ++YVR E+ E L+ A+ + GLLG N Sbjct: 257 DRSVLECAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVERLRKAIVQAEKRGLLGRNI 316 Query: 154 K-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 ++ + + GAGA++CGEETALL S+EG++GQPR +PP+PA GL+GCPT +NNVE Sbjct: 317 GGSAFNFQVEIRLGAGAFVCGEETALLASIEGRRGQPRPRPPYPAEHGLWGCPTLINNVE 376 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++A V I+ RGA W++ G E ++GTK+F+++G + +E M I+ E++ + G Sbjct: 377 TLANVAAIINRGADWFAALGTEKSKGTKVFALAGKIKNTGLIEVPMGISIHEIVHEMGSG 436 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + AV GG S C+PA +DY+ L+ GS +G+ +I+MD ++ Sbjct: 437 ---EVGGIKAVQTGGPSGGCIPAEHFH-LPVDYESLQAEGSIMGSGGMIIMDEGAAMVDV 492 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 F ESCG+C PCR GT ++ ++E++ +G ++ L E+ ++ ++C Sbjct: 493 ARFFMEFCVEESCGKCAPCRVGTTQVLLLLEKIGRGEGTAADLGQLEELCHLLQQTSLCG 552 Query: 393 LGDAAAWPIQGLIKNFRPLIEE 414 LG +AA P+ ++ FR E+ Sbjct: 553 LGQSAANPVLSTLRFFRREYEQ 574 >gi|294678552|ref|YP_003579167.1| NAD-dependent formate dehydrogenase subunit beta [Rhodobacter capsulatus SB 1003] gi|294477372|gb|ADE86760.1| NAD-dependent formate dehydrogenase, beta subunit [Rhodobacter capsulatus SB 1003] Length = 500 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 146/413 (35%), Positives = 210/413 (50%), Gaps = 13/413 (3%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R+ F ++ SL+ + W + K L+ ++ EV ASGLRGRGGAG Sbjct: 92 FFKRQTRLTFARCGRIEPLSLAQFAAAEGWAGLRKALKMTPAEVVEEVLASGLRGRGGAG 151 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + +D Y+V N DE + G+ DR ++ +P L+EG IA A+GA Sbjct: 152 FPTGIKWRTVAAAQAD-QKYIVCNVDEGDSGSFADRMLIEGDPFCLVEGMAIAGHAVGAT 210 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 ++Y+R E+ ++AA+ ++ V GAGAY+CGEET+LL Sbjct: 211 RGYVYIRSEYPDAIAVMRAAIAMAKP-------FLAEAGFEMEVRVGAGAYVCGEETSLL 263 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA GL+G PT VNN+ S+A VP I+ GA Y FG + +RGT Sbjct: 264 NSLEGKRGTVRAKPPLPALKGLFGKPTVVNNLLSLAAVPWIIAHGAKAYESFGMDRSRGT 323 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I G+V E IT EL+E CGG G + AV GG P Sbjct: 324 IPLQIGGNVKRGGLFETGFGITLGELVEDICGGTASGRP-VKAVQVGGPLGAYHPVSDYH 382 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 Y+ G +G A ++V D + D++K F ESCG CTPCR G + Sbjct: 383 -LPFCYEQFAGQGGLVGHAGLVVHDDTADMLKLARFAMEFCAIESCGTCTPCRIGAVRGV 441 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+ G A + LL ++ + ++ ++CALG +P+Q I++F Sbjct: 442 EVIDRIAAGDASA--MPLLDDLCQTMKLGSLCALGGFTPYPVQSAIRHFPADF 492 >gi|221201245|ref|ZP_03574285.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2M] gi|221206301|ref|ZP_03579314.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2] gi|221173610|gb|EEE06044.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2] gi|221179095|gb|EEE11502.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD2M] Length = 525 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGITDPLSIDDYLKYDGLVGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQASA-KQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIARAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ Y VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATG-HPARAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R+I LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|221213582|ref|ZP_03586556.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD1] gi|221166371|gb|EED98843.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia multivorans CGD1] Length = 525 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGITDPLSIDDYLKYDGLVGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQASA-KQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIARAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ Y VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R+I LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|160936612|ref|ZP_02083979.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC BAA-613] gi|158440403|gb|EDP18148.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC BAA-613] Length = 447 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 148/420 (35%), Positives = 233/420 (55%), Gaps = 8/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + S+ + + G + + K L ++ I+ E+ S L+GRGGAG+ G KW Sbjct: 14 LLRRVGRMDPVSVPEFEALGGFSGIRKALSMEKEEILEEISRSNLKGRGGAGYPAGRKWK 73 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + ++ D Y+V NADE EPGT KDR ++ P ++IEG +IA + G+ +IY+RG Sbjct: 74 SLYRIEGD-TKYIVCNADEGEPGTFKDRVLLEETPLSVIEGMLIAGYVFGSKQGYIYIRG 132 Query: 128 EFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E+ R ++ + A++ +G LG + G+D I V G GAY+CGE +A+L S+EGK Sbjct: 133 EYRRIQKIFETALENAEDAGYLGKDILGVPGFDYSITVVSGGGAYVCGENSAMLNSIEGK 192 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR+KPP A VGLYG PT VNNVE++ VP IL G+ + +G + GTKL SIS Sbjct: 193 TGRPRIKPPHLAEVGLYGKPTLVNNVETLCCVPIILEEGSQKFLSYGTTESGGTKLVSIS 252 Query: 246 GHVNYPCTVEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 GHV E + I+ +LI EK+ GG G GG S P Q+ Sbjct: 253 GHVKNRGVFEVGLGISLRQLIMDEKYGGGTSTGRKP-GFFHMGGQSGPIGFPEQL-DTPY 310 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 Y+ L G +G+ A++V+D S I++ I ++ F+ HESCG+CTPCR GT ++ ++ Sbjct: 311 TYETLAPKGLAVGSGAIVVLDDSVCIVEYIQKVFEFFVHESCGKCTPCRLGTTRILELLT 370 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 V+G A+ +++ L +++ + + C LG + + +++ R E I+ C Sbjct: 371 DFVEGRAKDGDVERLEYMARQVSQLSACGLGQSVNVALMSALRHRRGDFEAHIN-GGACP 429 >gi|323649954|gb|ADX97063.1| mitochondrial NADH dehydrogenase flavoprotein 1 [Perca flavescens] Length = 341 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 1/337 (0%) Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EPGTCKDR+IMR++PH L+EGC++A A+GA A+IY+RGEF E +LQ A++E YA Sbjct: 1 EGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYA 60 Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +GL+G + GYD D+ V GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GC Sbjct: 61 AGLIGKDCCGSGYDFDVFVMRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGC 120 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PTTV NVE++AV PTI RRG W+ GFGRE N GTKLF+ISGHVN PCTVEE MSI + Sbjct: 121 PTTVANVETVAVAPTICRRGGPWFLGFGRERNSGTKLFNISGHVNNPCTVEEEMSIPLKD 180 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 LIE+H GG+RGGWDNLLAVIPGGSS P +P +MD+DGL + +GLGTAA+IVMD Sbjct: 181 LIERHAGGVRGGWDNLLAVIPGGSSTPLIPKNVCEEVLMDFDGLIQAQTGLGTAALIVMD 240 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 +STDII+AI RL FYKHESCGQCTPCREG WM +M R VKG A+ EID+++E+SK Sbjct: 241 KSTDIIRAIARLIEFYKHESCGQCTPCREGVDWMNNMMWRFVKGDARPSEIDMIWELSKQ 300 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 IEG TICALGD AAWP+QGLI++FRP++E RI ++ + Sbjct: 301 IEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEHQQ 337 >gi|289751828|ref|ZP_06511206.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T92] gi|289692415|gb|EFD59844.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis T92] Length = 380 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 184/364 (50%), Positives = 240/364 (65%), Gaps = 10/364 (2%) Query: 16 QGKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 + +L+ + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ Sbjct: 20 ESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQG 79 Query: 73 CSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 + +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE Sbjct: 80 DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEV 139 Query: 130 IRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + L AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQ Sbjct: 140 VPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 199 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PRL+PPFPA GLYGCPT +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV Sbjct: 200 PRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHV 259 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P E + IT EL+ + GG+R G L PGGSS P L + +DY+G+ Sbjct: 260 TRPGQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGV 316 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G Sbjct: 317 GAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETG 376 Query: 369 IAQK 372 Sbjct: 377 RGSP 380 >gi|161525535|ref|YP_001580547.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616] gi|189349737|ref|YP_001945365.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616] gi|160342964|gb|ABX16050.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616] gi|189333759|dbj|BAG42829.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616] Length = 525 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGITDPLSIDDYLKYDGLVGLKNALALDGDAACETLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQASA-KQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +IYVR E+ +L+AA+ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GYIYVRSEYPHAIATLEAAIARAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y +G +RGT Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ Y VE + +T EL+ GG G A GG LP Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGPLGTYLP-EHQW 395 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +DY+ +G+ +G +++ D ++++ + F ESCG+CTPCR G+ + Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + R+ G +R+I LL ++ + ++CA+G +P+ + +F Sbjct: 456 ETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508 >gi|318041123|ref|ZP_07973079.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0101] Length = 521 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 149/417 (35%), Positives = 235/417 (56%), Gaps = 13/417 (3%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 L Q R + + +SL+D+++ G W + ++LE+ +I V+ SGLRGRGGA Sbjct: 106 FLNLQRRLVLGRCGVVDPESLADALAAGAWQQLPRVLEQNDPPAVIEIVRRSGLRGRGGA 165 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + +V NADE +PG DR +M +PHTL+EG IA+FA+GA Sbjct: 166 GYPTGLKWATVA-AMPGSQKVVVCNADEGDPGAFMDRTLMEGDPHTLLEGMAIAAFAVGA 224 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETA 177 FIYVR E+ E L+ A+ G LG G+ +I + GAGAY+CGEETA Sbjct: 225 QQGFIYVRAEYPLAIERLRTAISAAEQQGWLGRGIGGSGFSFEIELRVGAGAYVCGEETA 284 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PP+PA G++G PT +NNVE+ +P +L G Y Sbjct: 285 LIHSIEGRRGVPRPRPPYPAEHGVFGLPTLINNVETFGNIPALLELGVEAYG-------T 337 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++GHV +E M + ++E GG G + AV GG S C+PA Sbjct: 338 GTKVFSLTGHVQRSGVLEVPMGTSLRTIVETMGGGAPQG-RQIKAVQTGGPSGGCVPASA 396 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +DYD LK +G+ +G+ ++V+D +T+++ F + ESCG+C PCR GT Sbjct: 397 L-DSPVDYDSLKALGTIMGSGGMVVLDDTTNMVDIAAFFIAFSREESCGKCIPCRSGTVQ 455 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + ++ +L++ Q +++ L + + ++C LG +A P+ +++FR Sbjct: 456 LEMLLRKLLERRGQVADLEQLEALCHTVADASLCGLGQSAPKPVLSTLRHFRGDYLA 512 >gi|227326163|ref|ZP_03830187.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 431 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 154/351 (43%), Positives = 217/351 (61%), Gaps = 6/351 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D +++ VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 23 QPVWLDEYRSKNGYVAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M EPH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 83 MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A++E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP I+ GA+WY G G+ + GTKL SG V P Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + GG+R G L A PGG+ L + MD++ + + Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 GS +GTA + +D +++ L F+ ESCG CTPCR+G W ++++ Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKIL 371 >gi|317970222|ref|ZP_07971612.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0205] Length = 498 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 154/424 (36%), Positives = 243/424 (57%), Gaps = 13/424 (3%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58 L Q R + + +SL ++ + G + + ++L++ II V+ SGLRGRGGA Sbjct: 84 FLALQRRLVLAQCGRIDPESLEEAEAAGAYLQLRRVLQENDPLAIIERVRRSGLRGRGGA 143 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 G+ TG+KW+ + + D +V NADE +PG DR +M +PHTL+EG VIA+FA+GA Sbjct: 144 GYPTGLKWAAVAAMPGD-SKVVVCNADEGDPGAFMDRTVMEGDPHTLLEGMVIAAFAVGA 202 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETA 177 +IYVRGE+ E L+ +++ SG LG + G+ D+ + GAGAY+CGEETA Sbjct: 203 ERGWIYVRGEYPLAIERLRRGIEQARQSGWLGGSVGASGFRFDLELRVGAGAYVCGEETA 262 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG++G PR +PPFPA G++G PT +NNVE+ A +P +LR G Y Sbjct: 263 LIHSIEGRRGVPRPRPPFPAEQGVHGFPTLINNVETFANIPALLRLGLEAYGQ------- 315 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTK+FS++GHV VE M + ++E GG + + AV GG S C+PA Sbjct: 316 GTKVFSLTGHVQRSGVVEVPMGTSLRTIVETMAGGPK-NGHQIKAVQTGGPSGGCVPASH 374 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + +DYD L+E+G+ +G+ ++VMD +TD++ F + ESCG+C PCR GT Sbjct: 375 L-DTPVDYDSLRELGTIMGSGGMVVMDDTTDMVDLAAFFMAFCREESCGKCIPCRCGTVQ 433 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + ++ +L+ G ++ L + ++ ++C LG A P+ ++++R + Sbjct: 434 LEILLRKLLAGQGTGSDLSQLESLCHTVKEASLCGLGQNAPNPVLSSLRHYRGDFLALLQ 493 Query: 418 QYHR 421 + R Sbjct: 494 RDRR 497 >gi|307292624|ref|ZP_07572470.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1] gi|306880690|gb|EFN11906.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1] Length = 526 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 151/443 (34%), Positives = 209/443 (47%), Gaps = 43/443 (9%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R F + SL D W +D +++ VKASGLRGRGGAG Sbjct: 85 FFAGQQRFTFARCGIIDPLSLQDYADHDGWRGLDAARAMPPQAVVDAVKASGLRGRGGAG 144 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + SD ++V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 145 FPTGIKWQTVLDAVSD-AKFIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAG 203 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ ++Q A+ + V GAGAY+CGEETALL Sbjct: 204 HGYIYIRSEYPFAIAAMQEAIALSAERI---------APFTLEVRVGAGAYVCGEETALL 254 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +S+EGK+GQ R KPP PA GL+G PT +NNV S+A VP IL +GA Y+ G +RGT Sbjct: 255 DSIEGKRGQVRAKPPLPALAGLFGQPTVINNVLSLAAVPFILAKGAEAYAAVGFGRSRGT 314 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V + E IT EL+ GG G + AV GG P G M Sbjct: 315 MPVQLAGNVKHGGLYEIGFGITLGELVNGIGGGTASGRP-VRAVQVGGPLGAYFPPG-MF 372 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + G +G A + V D S D+ F ESCG+CTPCR G+ + Sbjct: 373 DLPFDYEAFAQAGGLIGHAGITVFDDSLDMAHMARFAMEFCSVESCGKCTPCRIGSTRGV 432 Query: 360 RVMERLVKGI----------------------AQKREID--------LLYEVSKNIEGRT 389 V++R++ G ID LL ++ ++ + Sbjct: 433 EVLDRIIAGRDAPAPVPTDQPWEGYLKTALNSRTPDRIDTGLEAQTTLLRDLCDTMKYGS 492 Query: 390 ICALGDAAAWPIQGLIKNFRPLI 412 +CALG +P+ + +F Sbjct: 493 LCALGGFTPYPVLSALDHFPEDF 515 >gi|307718325|ref|YP_003873857.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM 6192] gi|306532050|gb|ADN01584.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM 6192] Length = 418 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 153/407 (37%), Positives = 224/407 (55%), Gaps = 9/407 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + +SRG + + + L + +I EVK+SGLRGRGGAGF TG+KW + + Sbjct: 14 RDAFDMEAYISRGGFMGLRQALARPPAKVIAEVKSSGLRGRGGAGFPTGVKWESVQR--- 70 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + Y+V NADE EPGT KDR IM H P+ LIEG IA +A+GA FIY+RGE+ + Sbjct: 71 HKEPYVVANADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAK 130 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L AV++ LG Y DI + G G+Y+ G+ETALL SL G +G P +KP Sbjct: 131 GLIKAVEDARKHHFLGEKILGTDYSFDISLRMGGGSYVVGDETALLNSLMGNRGYPMMKP 190 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+P GL+G PT VNNVE++A VP + +GASW++ G E++ G KLF +SG V+ P Sbjct: 191 PYPTEEGLWGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGL 250 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M + EL+E G L AV GG++ P + +DYD L+ G Sbjct: 251 YELPMGVPLHELLEAAGG----VKGRLKAVQIGGTAGPVY-DDRALSFPLDYDSLRAEGG 305 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LG+ AV+VM+ + ++ + + + F+ ESCGQC PCR GT + + ++ G ++ Sbjct: 306 ALGSGAVVVMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEE 365 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +D + E+ + + C G + A P+ ++ F I I Sbjct: 366 YLDEMREIVTTMSVASFCPFGKSVALPVGNVLDLFGDEIRTFIAHQR 412 >gi|126640814|ref|YP_001083798.1| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978] Length = 395 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 157/389 (40%), Positives = 225/389 (57%), Gaps = 14/389 (3%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 ++ +KA+ ++GRGGAGF G+KWS M P YL+ NADE EPGT KDR + Sbjct: 1 MKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYLICNADEMEPGTFKDRLL 59 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 M PH LIEG +IA + + A +I++RGE+I + L A+++ A G LG N G Sbjct: 60 MEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSG 119 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 ++ ++ VH GAG YICGEETAL+ SLEG++ PR KPPFP G +G PT VNNVE+ Sbjct: 120 WNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNN 179 Query: 217 VPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 +P I+ RG WY G G+ + GTK++ SG V +P E T E+IE+H GG+R Sbjct: 180 LPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMR 239 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G L A +PGG+S LPA + MD + + + GS LGT ++V+D + ++ Sbjct: 240 DGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTR 297 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICAL 393 L F+ ESCG CTPCR+G W ++ ++ L G +K +ID L E+++ + G+T CA Sbjct: 298 NLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAH 357 Query: 394 GDAAAWPIQG----LIKNFRPLIEERIDQ 418 W +K+FR E ++ Sbjct: 358 ATRCEW---SRLWVALKHFRSEFEAKVTD 383 >gi|255019943|ref|ZP_05292017.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] gi|254970602|gb|EET28090.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus ATCC 51756] Length = 417 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 146/412 (35%), Positives = 221/412 (53%), Gaps = 7/412 (1%) Query: 13 YGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 L G + + + L+ +I EV+ SGLRG GGAGF TG+KW V Sbjct: 9 GAEDPADLDRYRDDGGYTGLQRALDMAPAELIAEVERSGLRGCGGAGFPTGVKWRL-RGV 67 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + P YLV N DE+EPG+ KDR ++ PH ++EG +IA+ A+G A +++RGE+ Sbjct: 68 DAPTPRYLVCNLDETEPGSFKDRALLLGAPHQILEGMLIAAHALGVQYAVVFIRGEYAEG 127 Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L+ A+ A+GLL G + + +H G YICGE++A+L ++EG++ PR K Sbjct: 128 AAVLERALAAVRAAGLLELP---GGALRLDIHLSLGRYICGEDSAILNAIEGRRPNPRKK 184 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PP A GL+ PTTVNN E+ A +P ILR G + G + GTKL+++SG V P Sbjct: 185 PPHIAQQGLWLQPTTVNNAETFAQLPGILRLGVDAWRALGVHDGVGTKLYNVSGPVRRPG 244 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E M T E++E H GG + V+PGGSS P + + M +D + ++G Sbjct: 245 VFELPMGTTLAEILETHAGG-ALPGRRIRGVLPGGSSTPFVLPDKFH-TPMHFDAMAKIG 302 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LGT VIV+D + + + F+ ESCG CTPCREG ++ ++ER+ +G+ Sbjct: 303 SRLGTGGVIVLDDGHCPVDFLLATTRFFARESCGFCTPCREGLPYIQWLLERIEQGLGTM 362 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 +ID + + I + CAL A P+ +++F + + H C + Sbjct: 363 ADIDKIRSLGAEIAPNSFCALAPGALMPVLSGLESFHEDFLAHVRE-HACPY 413 >gi|315185457|gb|EFU19228.1| NADH dehydrogenase (quinone) [Spirochaeta thermophila DSM 6578] Length = 418 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 154/406 (37%), Positives = 224/406 (55%), Gaps = 9/406 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L +SRG + + + L + +I EVKASGLRGRGGAGF TG+KW + + Sbjct: 15 DALDLEACLSRGGFMGLRQALARTPAKVIAEVKASGLRGRGGAGFPTGVKWESVQR---H 71 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 + Y+V NADE EPGT KDR IM H P+ LIEG IA +A+GA FIY+RGE+ + Sbjct: 72 KEPYVVANADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAKG 131 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L AV+E LG Y DI + G G+Y+ G+ETALL SL G +G P +KPP Sbjct: 132 LIKAVEEARKHHFLGEKILGSDYSFDISIKLGGGSYVVGDETALLNSLMGNRGYPMMKPP 191 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 +P GL+G PT VNNVE++A VP + +GASW++ G E++ G KLF +SG V+ P Sbjct: 192 YPTEEGLWGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGLY 251 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M + +L+E G L AV GG++ P + +DYD L+ G Sbjct: 252 ELPMGVPLHDLLEAAGG----VKGTLKAVQIGGTAGPVY-DDRALSFPLDYDSLRAEGGA 306 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LG+ AV+VM+ + ++ + + + F+ ESCGQC PCR GT + + ++ G ++ Sbjct: 307 LGSGAVVVMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEEY 366 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +D + ++ + + C G + A P+ ++ F I I Sbjct: 367 LDEMRDIVATMTVASFCPFGKSVALPVGNVLDLFGDEIRTFIAHQR 412 >gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein [Delftia acidovorans SPH-1] gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia acidovorans SPH-1] Length = 727 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 145/420 (34%), Positives = 228/420 (54%), Gaps = 12/420 (2%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q+R+ F + + +L+D + G W +++ I+ EV SGLRGRGGA F Sbjct: 300 LARQERLTFARVGVIDPLNLADYAAHGGWQGLERAARMEPAAIVQEVLDSGLRGRGGAAF 359 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + Y+ NADE + GT DR +M +P+TLIEG IA A+GA Sbjct: 360 PAGIKWKTVA-AAAGPQKYIACNADEGDSGTFADRLLMEGDPYTLIEGMAIAGLAVGATQ 418 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 +YVR E+ +L+ A+ A+G LG + + G + V GAG+Y+CGEETA+L Sbjct: 419 GLVYVRSEYPHAVATLREAIARAEAAGWLGRDVAGSGRAFHMEVRKGAGSYVCGEETAML 478 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EG++G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y GFG +RGT Sbjct: 479 ESIEGRRGIVRAKPPLPAIEGLWGRPTVINNVITLATVPMILARGAAFYQGFGMGRSRGT 538 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 F ++G++ VE++ ++ EL+E GG G + AV GG + Sbjct: 539 LPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATG-RTVKAVQVGGPLGSYVAPAD-W 596 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 A +DY+ G+ +G ++V D + D+ + F ESCG+CTPCR G+ + Sbjct: 597 DAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 656 Query: 360 RVMERLVKGIAQKR-------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 V++R+V+ A ++ LL + ++ ++CA+G +P++ + ++ Sbjct: 657 EVIDRIVRAGADPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHYSQDF 716 >gi|148701042|gb|EDL32989.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a [Mus musculus] Length = 334 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 211/325 (64%), Positives = 259/325 (79%), Gaps = 1/325 (0%) Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 MRH+PH L+EGC++ A+GA A+IY+RGEF E +LQ A+ E Y +GL+G N+ Sbjct: 1 MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSD 60 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 YD D+ V GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV Sbjct: 61 YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GG Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGG 180 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 WDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARL 240 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 FYKHESCGQCTPCREG WM +VM R VKG A+ EID L+E+SK IEG TICALGD Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300 Query: 397 AAWPIQGLIKNFRPLIEERIDQYHR 421 AAWP+QGLI++FRP +E+R+ ++ + Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRFAQ 325 >gi|149061921|gb|EDM12344.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b [Rattus norvegicus] Length = 334 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 209/323 (64%), Positives = 257/323 (79%), Gaps = 1/323 (0%) Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156 MRH+PH L+EGC++ A+GA A+IY+RGEF E +LQ A+ E Y +GL+G N+ Sbjct: 1 MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSD 60 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 YD D+ V GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV Sbjct: 61 YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GG Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGG 180 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 WDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVM+ STDI+KAI RL Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARL 240 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 FYKHESCGQCTPCREG WM +VM R VKG A+ EID L+E+SK IEG TICALGD Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300 Query: 397 AAWPIQGLIKNFRPLIEERIDQY 419 AAWP+QGLI++FRP +E+R+ ++ Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRF 323 >gi|307942122|ref|ZP_07657473.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4] gi|307774408|gb|EFO33618.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4] Length = 319 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 226/298 (75%), Positives = 255/298 (85%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML DQDRIFTN+YGL L + RG WD+ +L+KGRDWII+E+KASGLRGRGGAGF Sbjct: 1 MLKDQDRIFTNIYGLNDWGLEGAKKRGQWDDTKALLDKGRDWIIDEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA Sbjct: 61 PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDN LAVIPGGSSVPCL A Q+ Sbjct: 241 LFCISGHVNQPCTVEEELGIPFRELIDRHCGGIRGGWDNFLAVIPGGSSVPCLTAEQL 298 >gi|303248403|ref|ZP_07334663.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302490201|gb|EFL50119.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 454 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 143/420 (34%), Positives = 231/420 (55%), Gaps = 8/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + + + + + G ++ + + ++ +++ V AS LRGRGGAGF G KW Sbjct: 9 LFKNRHLGRPATFDEYRAGGGYEALYATIGKRTPQEVLDIVLASDLRGRGGAGFPAGRKW 68 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 +P P Y+VVN DE EPGT KDR ++ +PH +IEG ++ ++A+ A ++R Sbjct: 69 QGIP-AGYVGPRYVVVNTDEMEPGTFKDRVLVNVDPHLVIEGILLCAYAVSATLGVCFIR 127 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 + + L+ GLLG N + DI VH AG YICGE +A ++++ G Sbjct: 128 PSYEADAVLLERETQVARDKGLLGKNILGTDFSFDIHVHRSAGRYICGEASAQIKAISGL 187 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSI 244 + PR P + GL+ CPT VNN+E++A +P I++ G W+ GTKLFS+ Sbjct: 188 RPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVKNGPDWFKSLARTPTGAGTKLFSV 247 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG + P E M I E++ +H GG+ + AVIPGG+S P +P ++ MD Sbjct: 248 SGRIAKPDCYELPMGIPLREILFEHAGGMP-PGRAIKAVIPGGASTPFMP-ERLLDLPMD 305 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D +K+ G LGTA+++V D++T ++ A L F+ ESCG CTPCREG ++ ++ Sbjct: 306 FDAMKKAGQRLGTASIMVFDQNTCLVGATLNLIEFFTRESCGWCTPCREGLPYVRHLLRL 365 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G ++ I ++ +++K ++ CA AA PI L+ +F + E + Q +C F Sbjct: 366 IESGEGKEEHIGMIRDMAKVMQ-SAYCAFAPGAAEPILSLLTHFEAEVREHLHQ-RKCPF 423 >gi|239905977|ref|YP_002952716.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] gi|239795841|dbj|BAH74830.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] Length = 454 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 137/420 (32%), Positives = 228/420 (54%), Gaps = 8/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + + ++ + ++ G ++ + + ++ ++ V + LRGRGGAGF G KW Sbjct: 9 LFKNRHLGRPATIDEYLAGGGYEALRATIGQRTPAEVLQLVLDADLRGRGGAGFPAGRKW 68 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 +P Y+V+N DE EPGT KDR ++ +PH +IEG ++ ++A+GA ++R Sbjct: 69 QGIP-ADHVGTRYVVINTDEMEPGTFKDRILVNVDPHLVIEGIILCAYAVGACEGVFFIR 127 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 + + + ++ G LG N + D+ VH AG YICGE +A ++++ G Sbjct: 128 PSYEGDAKLIEQETQVARERGYLGKNILGTDFCFDVHVHRSAGRYICGEASAQIKAISGL 187 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR-GTKLFSI 244 + PR P + GL+ CPT VNN+E++A +P I+R G +W+ R + GTKL+S+ Sbjct: 188 RPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVRNGPAWFKSLARSESGSGTKLYSV 247 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + +T ++I H GG+ VIPGG+S P LP + MD Sbjct: 248 SGQVARPGCYELPIGVTIRDIIFTHAGGMA-PGKTFKTVIPGGASTPYLPEA-LLDLEMD 305 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D +++ G GTA+++V D+ T ++ A L F+ ESCG CTPCREG ++ ++ R Sbjct: 306 FDPMRKAGQRFGTASLMVFDQDTCLVGATLSLMEFFARESCGWCTPCREGIPYVRELLRR 365 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G + + +L E+ + CA AA P++GL+ +F ++ I + RC F Sbjct: 366 IEGGEGTEEHVGMLQEMLPVL-DLAYCAFAPGAAEPLRGLLTHFMDEVQAHITE-KRCPF 423 >gi|71892262|ref|YP_277996.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796368|gb|AAZ41119.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 443 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 158/411 (38%), Positives = 235/411 (57%), Gaps = 7/411 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K + + II V+ SGLRGRGG GF TG+KWS M + S Sbjct: 23 QPVWLHEYKSKNGYRAAYKAITQMSPEEIIELVRNSGLRGRGGGGFFTGIKWSMMSQSKS 82 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YLV NADE EPGT KDR +M PH L+EG +I+S+A+GA A+I++R E+I + Sbjct: 83 VCSRYLVCNADEMEPGTYKDRFLMERLPHLLLEGILISSYALGASRAYIFLRYEYIIVAK 142 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L A+ E + GL+G N ++ ++ +H GAG YICGEETAL+ +LEG++ PR KP Sbjct: 143 YLTRAIAEIKSIGLIGKNILNSEFNFELFLHTGAGRYICGEETALINALEGRRAVPRAKP 202 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFP++VGL+G PT VNNVE++ +P I+ G +WY + + GTKL SG V P Sbjct: 203 PFPSHVGLWGKPTCVNNVETLCNIPGIIEHGTTWYRNISSKKSNDSGTKLMGFSGRVKNP 262 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T E++E + G+ G+ +L A PGG S L + MD+D + Sbjct: 263 GVWELPFGTTAREILEDYSRGMCPGF-SLKAWQPGGVSTDFLTTDHL-DTPMDFDKIAIS 320 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS GT I +D + +++ + L F+ ESCG CTPCR+G W+++++ L + Sbjct: 321 GSRFGTGMAIAIDNTVNMVSLVRNLEEFFSRESCGWCTPCRDGLPWIVKLLISLENKDGR 380 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 +I+LL ++ + GRT CA A P++ +K F+ E I ++++ Sbjct: 381 PGDIELLEKLCCVLGPGRTFCAHAPGAIEPLKSALKYFKNEFELGIHEFYK 431 >gi|256371185|ref|YP_003109009.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM 10331] gi|256007769|gb|ACU53336.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM 10331] Length = 432 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 180/429 (41%), Positives = 246/429 (57%), Gaps = 18/429 (4%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSF 68 L +L ++ + + L E + + EV + L GRGGAGF G KWS Sbjct: 9 ARLGYEDSYTLERFLATDGDAGLRRALLELTPEQVHAEVLEANLLGRGGAGFEAGRKWSM 68 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 + K YLVVN DESEP T KD ++ +PH L+EG IA++AIGA AFIY+RGE Sbjct: 69 LRKAP---RRYLVVNGDESEPATFKDHLLVERDPHQLVEGATIAAYAIGASVAFIYLRGE 125 Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 F E +Q A+++ YA G LG N G+ +DI++ GAGAYICGEETALLESLEGK+G Sbjct: 126 FALGLERVQQAINDAYARGALGRNIFGSGFSLDIVLQPGAGAYICGEETALLESLEGKRG 185 Query: 188 QPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 PR+KPP FPA +GLYG PT VNNVE+++ +P I+R G + + G + GT++F++SG Sbjct: 186 FPRIKPPYFPAVIGLYGAPTIVNNVETVSNLPWIVRHGGAAFRALGAGRSTGTRIFALSG 245 Query: 247 HVNYPCTVEESM-SITFDELIEKHCGGIRGGWDN-LLAVIPGGSSVPCLPAGQMRGAIMD 304 V P E M S+TF ELI G D L A IPGG S P L + + Sbjct: 246 SVRRPGAFEVEMTSVTFRELIYGDAYGQGLEPDRELRAFIPGGVSSPWLFPEHL-DLPLG 304 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 D + + GS LG+ ++IVMD ++A WR++ F+ ESCGQCTPCREG W+ +V+ R Sbjct: 305 QDEVAKAGSMLGSGSIIVMDDGDCPVRAAWRIARFFARESCGQCTPCREGGTWIEQVLRR 364 Query: 365 LVKGIAQKREIDLLYEVSKNI--------EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L G ++ ++DLL + NI TIC LG + + I+ FR + I Sbjct: 365 LELGYGREEDLDLLLDACDNISPGVTWPPAQTTICVLGPSIPPSVVAAIRRFRDVFLTHI 424 Query: 417 DQYHRCNFQ 425 + RC + Sbjct: 425 KE-ERCPYD 432 >gi|195402651|ref|XP_002059918.1| GJ15106 [Drosophila virilis] gi|194140784|gb|EDW57255.1| GJ15106 [Drosophila virilis] Length = 501 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 201/419 (47%), Positives = 264/419 (63%), Gaps = 3/419 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 LTD DRIF NLYG L + +RG W +LE G WI++EVK SGLRGRGG+G+ Sbjct: 78 LTDCDRIFQNLYGRLDWRLKGACARGDWYRTADLLEMGPQWIMDEVKRSGLRGRGGSGYY 137 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G KW + KV S + L++N E EPGTCKDR+I+RHEPH +IEGC++A FA+G Sbjct: 138 AGSKWEQLQKVES-KDKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGFAMGCEKC 196 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GL+G NS G +I V G Y+ GEETAL+ Sbjct: 197 IIYVRNRFYNEACNLQFALAEAYRYGLIGCNSCDTGIKFEIHVQRG-DRYLTGEETALVN 255 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PP+ G + P+TV N ES+AVVPTILRRGA W++ GR N GTK Sbjct: 256 CLMGKLARPRKRPPYLHEKGYFDHPSTVINTESLAVVPTILRRGAKWFTSLGRNMNFGTK 315 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISGHV +PCTVEE MS+ ++IE H GG+ GGW+NLLAV PGG S P + Sbjct: 316 LFNISGHVLHPCTVEEEMSMPLRDIIEMHAGGVCGGWNNLLAVWPGGLSTPLIGRAAAEE 375 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MDYD L+ GS LGT +IV+ D + + FY ++C QCTPCR+G W+ Sbjct: 376 VLMDYDALEAKGSELGTGGIIVVCNDCDPLLVMQHTIEFYMKQTCKQCTPCRDGAIWLPE 435 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + + +G + ++ + +SK + G TICAL D+ A +GLI++F P IEERI +Y Sbjct: 436 IFKNFTRGESVPHMMEFIEVISKTMTGTTICALSDSQANVARGLIQHFGPYIEERIIEY 494 >gi|294146591|ref|YP_003559257.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium japonicum UT26S] gi|292677008|dbj|BAI98525.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium japonicum UT26S] Length = 526 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 147/443 (33%), Positives = 207/443 (46%), Gaps = 43/443 (9%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 Q R F + SL D G W +D +++ VKASGLRGRGGAG Sbjct: 85 FFAGQQRFTFARCGIIDPLSLQDYADHGGWRGLDAARAMAPQAVVDAVKASGLRGRGGAG 144 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + SD ++V NADE + GT DR +M +P LIEG IA A+GA Sbjct: 145 FPTGIKWQTVLDAVSD-AKFIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAG 203 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ +++ A+ + V GAGAY+CGEETALL Sbjct: 204 HGYIYIRSEYPFAIAAMREAIALSAERI---------APFTLEVRVGAGAYVCGEETALL 254 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 +S+EGK+GQ R KPP PA GL+G PT +NNV S+A VP IL GA Y+ G +RGT Sbjct: 255 DSIEGKRGQVRAKPPLPALSGLFGQPTVINNVLSLAAVPFILAEGAEAYAAVGFGRSRGT 314 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V + E IT EL+ GG G + AV GG P M Sbjct: 315 MPVQLAGNVKHGGLYEIGFGITLGELVNGIGGGTASGRP-VRAVQVGGPLGAYFPPS-MF 372 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ + G +G A + + D D+ F ESCG+CTPCR G+ + Sbjct: 373 DLPFDYEAFAQAGGLIGHAGITLFDDMVDMAHMARFAMEFCAVESCGKCTPCRIGSTRGV 432 Query: 360 RVMERLV----------KGIAQKREI--------------------DLLYEVSKNIEGRT 389 VM+R++ G + + LL ++ ++ + Sbjct: 433 EVMDRIIAARDSAPAVPAGRQWEGYLQKALNSRTPDRIDTGLEAQTALLRDLCDTMKHGS 492 Query: 390 ICALGDAAAWPIQGLIKNFRPLI 412 +CALG +P+ + +F Sbjct: 493 LCALGGFTPYPVLSALDHFPQDF 515 >gi|283850902|ref|ZP_06368188.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] gi|283573825|gb|EFC21799.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] Length = 454 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 143/420 (34%), Positives = 226/420 (53%), Gaps = 8/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + + + + + G ++ + I ++ + V + LRGRGGAGF G KW Sbjct: 9 LFKNRHYGRPTTFDEYRAGGGYEALFATIGKRTPAEVTQIVLDADLRGRGGAGFPAGRKW 68 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 +P P Y+VVN DE EPGT KDR ++ +PH +IEG ++ ++A+ A ++R Sbjct: 69 QGIP-AGYVGPRYVVVNTDEMEPGTFKDRVLVNVDPHLVIEGIILCAYAVSATLGICFIR 127 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 + + L+ +GLLG N + DI +H AG YICGE +A ++++ G Sbjct: 128 PSYEADARLLERETQVARNNGLLGKNILGSDFSFDIHIHRSAGRYICGEASAQIKAISGL 187 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSI 244 + PR P + GL+ CPT VNN+E++A +P I+ G +W+ G E GTKLFS+ Sbjct: 188 RPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVANGPAWFKGLAHSETGSGTKLFSV 247 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + E+I H GG+ + AVIPGG+S P +P + MD Sbjct: 248 SGRVVRPDCYELPIGTPLREIIFDHAGGMP-PGRVIKAVIPGGASSPFMPEKYL-DLQMD 305 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 ++ +++ G LGTA++IV D++T ++ A L F+ ESCG CTPCREG ++ ++ Sbjct: 306 FEPMRKAGQRLGTASIIVFDQNTCLVGATLNLMEFFARESCGWCTPCREGLPYVRDLLRL 365 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 + G ++ ID++ ++ K + CA AA P+ L +F + E + Q RC F Sbjct: 366 IEGGEGREEHIDMIKDMGKAML-SAYCAFAPGAAEPLLSLFTHFEAEVREHLRQ-KRCPF 423 >gi|90425542|ref|YP_533912.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] gi|90107556|gb|ABD89593.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18] Length = 428 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 165/419 (39%), Positives = 236/419 (56%), Gaps = 12/419 (2%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 G + ++ G +D + L++ D ++ V+ SGLRGRGGAGF TG KW M K Sbjct: 13 GREPHRFAEWQRLGGYDALRGALQRHSPDALVTIVEDSGLRGRGGAGFLTGTKWRLMRKA 72 Query: 73 C---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 D P YL VN DE EPG+ KDR +M PH LIEG ++A++AIGA I VR + Sbjct: 73 AEAAGDGPRYLCVNGDEMEPGSFKDRLLMEALPHQLIEGAMLAAYAIGATEVIILVRDAY 132 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 +L A+ E ++GLLG N G+ + + +H AG YI GEETAL+ ++EG++ Sbjct: 133 RAAAVALTRAITEAESAGLLGRNILGSGFGLKMRLHTSAGRYIVGEETALIAAIEGERPV 192 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR +PP+PA GL+G PTTVNNVE+++ VP I++ GA W+ G R GTKL+ ISG V Sbjct: 193 PRHRPPYPAQSGLWGRPTTVNNVETLSAVPHIVQNGAEWFQGLSRTAEGGTKLYGISGRV 252 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P +E M ELIE G LLA PGG + L ++ MD+ + Sbjct: 253 ARPQLIEAPMGTPAGELIEMAGG--IRDGRKLLAFQPGGGATAFLQEAEL-DVPMDFAHV 309 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 K+ GS LGT AVIV+D + + AI R + FY ESCG CTPCR+G W+ ++++ L G Sbjct: 310 KKAGSSLGTGAVIVLDDQSCPVAAIGRHARFYARESCGLCTPCRDGLPWVAKLLDALEAG 369 Query: 369 IAQKREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + +IDLL+ + GR+ C L A P++ ++ F + ++ + C + Sbjct: 370 HGKPEDIDLLHMHVELAGPSGRSFCDLMAGAMTPVKSGLERFGDIFAAHLNGH--CPVR 426 >gi|116050628|ref|YP_790553.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa UCBPP-PA14] gi|115585849|gb|ABJ11864.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa UCBPP-PA14] Length = 449 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 159/412 (38%), Positives = 224/412 (54%), Gaps = 12/412 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ + K L +D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 QPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ Sbjct: 90 LNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAR 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L A+DE A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251 PFPA VG++G PT VNNVE++ VP I+ G WY R + GTKL SG V P Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNP 269 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E ++ EL E + GG+R G+ L A PGG+ L + A M G+ ++ Sbjct: 270 GLWELPFGVSARELFEDYAGGMRDGF-QLKAWQPGGAGTGFLLPEHL-DAQMFAGGIAKV 327 Query: 312 GSGLGTAAVIVMDRSTD---IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 G+ +GT R A W+ S + PCR+G W ++++ L +G Sbjct: 328 GTRMGTGLAHGGGRQHQHGFPCCATWKSSSPASPAAGA--PPCRDGLPWSVKLLRALERG 385 Query: 369 IAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 Q +++ L ++ + G+T CA A P+ +K FR E I + Sbjct: 386 EGQPGDLETLKQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQ 437 >gi|194754954|ref|XP_001959757.1| GF11875 [Drosophila ananassae] gi|190621055|gb|EDV36579.1| GF11875 [Drosophila ananassae] Length = 520 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 193/421 (45%), Positives = 255/421 (60%), Gaps = 4/421 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W ILE G DW+++++K S LRGRGGAGF Sbjct: 85 LKDSDRIFQNLYGRHDWRLKGACQRGDWHKTGDILELGPDWMMDQIKQSALRGRGGAGFY 144 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 KW F+ +V S++ P LVVN E EPGTCKDR+I+RHEPH LIEG ++A IG Sbjct: 145 CATKWEFLKQVKSEKVPKMLVVNCAEGEPGTCKDREILRHEPHKLIEGILLAGVTIGCGR 204 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A IY+R F E +L A+ E Y GL+G + DI++ G Y+CGEETA+L Sbjct: 205 AIIYIRNRFYNEACNLHYALAEAYHHGLVGDGACGTDIKFDIMIQRG-DRYLCGEETAML 263 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L G+ G+PR +PPF G + P V N ES++V+PT+LRRG W++G GR N GT Sbjct: 264 NCLMGELGRPRRRPPFLTEKGYFNHPCLVVNAESLSVLPTLLRRGPCWWTGLGRSYNAGT 323 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KLF ISG VN PCTVEE MS+ E+IE H GG++GGW+NLLAV PGG S L Sbjct: 324 KLFCISGEVNNPCTVEEEMSMPMREIIELHAGGVQGGWENLLAVFPGGLSTALLGPEAAG 383 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 G +MD+D L+ GSGLG ++IVM + D + + R FY+ +C QCT CR+G W+ Sbjct: 384 GVMMDFDCLEAAGSGLGCGSIIVMSKKCDPLAIMHRAIEFYEEHTCKQCTYCRDGAIWLP 443 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R G A EID ++ I+ R ICALG + A + +++ F I +RI + Sbjct: 444 ELFGRFATGQAHPHEIDWTSVIADKIKNSRPICALGVSQAITAESMVRMFSEQINQRIVK 503 Query: 419 Y 419 + Sbjct: 504 F 504 >gi|33519940|ref|NP_878772.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus] gi|33504286|emb|CAD83178.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus] Length = 445 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 159/404 (39%), Positives = 229/404 (56%), Gaps = 7/404 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + S+ S+ + K + + II + SGLRGRGG GF TG+KWS M + Sbjct: 23 RKPVWFSEYQSKNGYMAFRKAIVNLSQSNIIELINKSGLRGRGGGGFLTGLKWSMMTQNK 82 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 S YLV NADE EPGT KDR +M PH L+EG +IA +A+G A+I++R E++ Sbjct: 83 SGLVRYLVCNADEMEPGTYKDRFLMERLPHLLLEGILIAGYALGVSVAYIFLRYEYMTAA 142 Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E L+ A++E ++GLLG N +++++ +H GAG YICGEETALL SLEG + PR K Sbjct: 143 EYLRIAINEIRSAGLLGKNILNTEFNLELFIHTGAGRYICGEETALLSSLEGNRAIPRAK 202 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNY 250 PPFPA GL+G PT VNNVE++ +P I+ G SWY N+ GTKL SG V Sbjct: 203 PPFPAQSGLWGKPTCVNNVETLCNIPGIIEHGVSWYKNISVKYSNDSGTKLMGFSGKVKN 262 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E IT E++E + G+ G+ L A PGG+S L + MD+D +K Sbjct: 263 PGIWELPFGITAREILEDYAYGMCNGF-YLKAWQPGGASTDFLIENHL-DTPMDFDNIKS 320 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 +GS GT + +D + +++ + L F+ ESCG CTPCR+G W+++++ L K Sbjct: 321 VGSRFGTGIAVAVDNTVNMVGLVRNLEEFFSRESCGWCTPCRDGLPWVVKLLIALEKNSG 380 Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413 ++ +L + + G+T CA A P++ +K FR E Sbjct: 381 YPEDLIMLEHLCNLLGPGKTFCAHAPGAMEPLKSALKYFRDEFE 424 >gi|163785517|ref|ZP_02180100.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] gi|159879215|gb|EDP73136.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1] Length = 403 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 164/385 (42%), Positives = 226/385 (58%), Gaps = 16/385 (4%) Query: 19 SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + + G + + K L K + II+ V+ S LRGRGGAGF TG KW F+ V + +P Sbjct: 33 DIEEYETTGGYSALKKALNKFTPEEIIDLVEESTLRGRGGAGFPTGRKWRFV--VSNPKP 90 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL+ NADESEPGT KDR I+ +PH LIEG +I+++AIGA FIY+RGE+ L+ Sbjct: 91 RYLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAEKGFIYIRGEYPAGYMILE 150 Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A++E Y G LG N + D+ V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P Sbjct: 151 NAINEAYERGYLGKNILGSDFSFDLYVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 210 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 VGL+G PT VNNVE+++ +P I+ ++ G G KLF +SG V P E Sbjct: 211 PQVGLFGRPTVVNNVETLSNIPIIITY-EQYFMNIGPAGYYGPKLFPVSGRVKRPGVYES 269 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +M IT ELIE G + AV G V MDY + G G Sbjct: 270 TMDITLYELIEMAGGAVGKP----KAVFAGALGVYHKNE---FDIPMDY-SPRGFG---G 318 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T IV++ + II ++ ++ F+ HESCG+CTPCR GT ++++ +G A +++I Sbjct: 319 TGTTIVLNENDCIIDSLIVITNFFHHESCGKCTPCRVGTYEQFNIIKKFQEGTATEKDIQ 378 Query: 377 LLYEVSKNIEGRTICALGDAAAWPI 401 LL + KNI +IC LG +A + Sbjct: 379 LLEHLGKNIPVGSICGLGYSAPNAV 403 >gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] Length = 565 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 154/397 (38%), Positives = 223/397 (56%), Gaps = 19/397 (4%) Query: 18 KSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++L D + G + + + + D I +E+ SGLRG GGAGF +G KWSF+ Sbjct: 186 ENLKDYSANGGYAELQNLRNGSRTPDQIQDEILESGLRGMGGAGFPSGKKWSFVRMNEG- 244 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YL VN DE EPGT KDR + EPH +EG +IA++A+ A FIY+R E+ E Sbjct: 245 -VRYLAVNGDEGEPGTFKDRYFLEREPHFFLEGMLIAAWAVNAEKCFIYMRDEYPAVLEI 303 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L + SG++ + GY I + GAGAYICGEE+A++ES+EGKKG PR +PPF Sbjct: 304 LAKEISALETSGIV----ESGY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPF 356 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A+VG++ PT V+NVE++ + I R G++ + G +G + +S+SG V P Sbjct: 357 VASVGIFNKPTLVHNVETLHWIAKISREGSAVFGAHGANGRKGLRSYSVSGRVRNPGIKL 416 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T ELIE + GG+ + A PGG S LPA M +D+D L+E G+ + Sbjct: 417 APAGTTVRELIEDYSGGM-LEGHSFKAYQPGGPSSGLLPAS-MGDIPLDFDTLQEYGTFI 474 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V+ +A + F++ ESCGQCTPCR G +++M K + Sbjct: 475 GSAAVVVLSNHDSAKEAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SQDKWDQ 528 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +LL E+S + +IC LG AA PI+ +IK+F I Sbjct: 529 NLLEELSVAMVDASICGLGQAAPNPIRMVIKHFNDEI 565 >gi|162148250|ref|YP_001602711.1| NADH-quinone oxidoreductase subunit F [Gluconacetobacter diazotrophicus PAl 5] gi|209542890|ref|YP_002275119.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl 5] gi|161786827|emb|CAP56410.1| putative NADH-quinone oxidoreductase chain F [Gluconacetobacter diazotrophicus PAl 5] gi|209530567|gb|ACI50504.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl 5] Length = 428 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 171/412 (41%), Positives = 234/412 (56%), Gaps = 8/412 (1%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-S 74 + G W + + L + + +I EV S LRGRGGAGF TG KWSF+P+ Sbjct: 15 PPDCAAYGRAGGWQGLRRALRDLTPEAVIAEVTDSRLRGRGGAGFGTGQKWSFVPRTPAG 74 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ YLV NADE EPGT KDR ++ P LIEG ++A +AI A I++RGE+ + Sbjct: 75 DQRKYLVANADEMEPGTFKDRILLEGNPLQLIEGMIVAGYAIQAGEGVIFLRGEYHLALD 134 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L A+DE A G LG + G+D DI VH G YICGEETALL +LEG + PR KP Sbjct: 135 RLTRAIDEARAVGWLGRDIAGSGFDFDIHVHASGGRYICGEETALLTALEGSRAVPRSKP 194 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PFP GL+G P+ VNNVE++ VP IL GA+W+ + GTKLF +SG V P Sbjct: 195 PFPQVGGLWGAPSVVNNVETLCNVPHILANGAAWFRALAIGPDGGTKLFGVSGRVKRPGA 254 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E M E+IE+H GG+R G+ L A++PGG+S L G + MDY +++ GS Sbjct: 255 WELPMGTPLREIIEEHAGGMRDGYG-LRALLPGGASTAFLDGGAI-DIAMDYATVEKAGS 312 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 LGT I++D T + + L F+ ESCG CTPCR+G W+ R+++ + +G + Sbjct: 313 RLGTGLAILLDDRTCPVGMLRNLEHFFAQESCGWCTPCRDGLPWVERLLDAIEEGRGEDG 372 Query: 374 EIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 ++DLL ++ I GRT CA A P+ + FR E + + RC Sbjct: 373 DLDLLAHHARMIGPMGRTFCAHAPGAIAPLSSGLNLFRAEFEAHL-RLGRCP 423 >gi|326386802|ref|ZP_08208422.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM 19370] gi|326208721|gb|EGD59518.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM 19370] Length = 503 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 144/434 (33%), Positives = 217/434 (50%), Gaps = 34/434 (7%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SL+D + G W + ++ +I EV SGLRGRGGAG Sbjct: 80 FLRGQQRLTFARAGKTRPLSLADYEATGGWAALRRVRGMTGAEVIAEVMQSGLRGRGGAG 139 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW + Y+V NADE + GT DR +M +P+ LIEG IA+ A+GA Sbjct: 140 FPAGIKWKTVHDAP-GTRKYVVCNADEGDSGTFADRMLMEGDPYQLIEGLAIAAHAVGAG 198 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY R E+ L+AA+D + + V GAGAY+CGEET+LL Sbjct: 199 HGYIYTRSEYPHAIAKLRAAIDLSRE---------IVAPFVLEVRAGAGAYVCGEETSLL 249 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL-RRGASWYSGFGRENNRG 238 S+EGK+G R KPP PA GL+GCPT VNNV +IA +P I+ GA+ Y+ G + + G Sbjct: 250 NSIEGKRGIVRAKPPLPALEGLFGCPTVVNNVLTIAAIPHIMAEGGAAEYAALGVDRSLG 309 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 TK ++G++ + E + IT +L+ GG G + AV GG +P Q Sbjct: 310 TKPIQLAGNIRHGGLYETAFGITLRDLVHAIGGGTASGRP-VKAVQVGGPLGAYIPPEQ- 367 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 DY+ + + +G V+V D + D+ F ESCG+CTPCR G+ Sbjct: 368 FDLPFDYEAYARVDALIGHGGVVVFDDTADMGALARFAMEFCAAESCGKCTPCRIGSTRG 427 Query: 359 MRVMERLV--------------------KGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + V++RL ++ ++DLL ++ + ++ ++CALG A Sbjct: 428 VEVIDRLRTREKVLDPVAALPQMHNAPKHARGREADVDLLKDLCETMKFGSLCALGGFAP 487 Query: 399 WPIQGLIKNFRPLI 412 +P+ ++ + Sbjct: 488 YPVLSALRYWPEDF 501 >gi|58697052|ref|ZP_00372511.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila simulans] gi|58536680|gb|EAL59972.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila simulans] Length = 340 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 203/325 (62%), Positives = 244/325 (75%), Gaps = 3/325 (0%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML +QD+IFTNL G + L + RG W ++L+ G + II+EVK SGLRGRGGAGF Sbjct: 18 MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 77 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 STG+KWSFMPK YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A Sbjct: 78 STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 135 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYICGEETA L Sbjct: 136 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 195 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W++ G+ NN GT Sbjct: 196 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 255 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K+F ISGHVN PC VEE + I ELIEK+ GG+RGGWDNLLAVIPGGSS P +P Sbjct: 256 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 315 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMD 324 MD+D L+ SGLGTAAVIVMD Sbjct: 316 TIEMDFDSLRTAQSGLGTAAVIVMD 340 >gi|255647864|gb|ACU24391.1| unknown [Glycine max] Length = 315 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 209/305 (68%), Positives = 250/305 (81%), Gaps = 1/305 (0%) Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174 + A A+IY+RGE++ ER++L+ A E YA+GLLG N+ G+D D+ +H+GAGAYICGE Sbjct: 1 MRASAAYIYIRGEYVNERKNLEKARQEAYAAGLLGENACGSGFDFDVHIHYGAGAYICGE 60 Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234 E ALLESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG W++ FGR+ Sbjct: 61 EAALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRK 120 Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294 NN GTKLF +SGHVN PCTVEE MSI ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P Sbjct: 121 NNAGTKLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGIRGGWDNLLAVIPGGSSVPLIP 180 Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 MDYD LK +G+GLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG Sbjct: 181 KHVCDDIFMDYDALKAVGTGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREG 240 Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 TGW+ +MER+ G A+ EID+L E++K IEG TICALGDAAAWP+QGLIK+FRP +E Sbjct: 241 TGWLWTIMERMKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIKHFRPELER 300 Query: 415 RIDQY 419 RI ++ Sbjct: 301 RIREH 305 >gi|87198757|ref|YP_496014.1| NADH dehydrogenase (quinone) [Novosphingobium aromaticivorans DSM 12444] gi|87134438|gb|ABD25180.1| formate dehydrogenase beta subunit [Novosphingobium aromaticivorans DSM 12444] Length = 512 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 149/434 (34%), Positives = 212/434 (48%), Gaps = 34/434 (7%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 + Q R F + SL D + G W + + E G I +V SGLRGRGGAG Sbjct: 81 FIARQQRFTFVRAGRTRPLSLDDYAASGGWQGLARAREIGPVSTIAQVTESGLRGRGGAG 140 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G+KW+ + S Y+V NADE + T DR +M +P LIEG IA FA+GA Sbjct: 141 FPAGIKWTTVA-NASGGTKYIVCNADEGDSATFADRMVMEGDPFMLIEGMAIAGFAVGAG 199 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +++Y+R E+ E ++ AV A L ++ V GAGAY+CGEET+LL Sbjct: 200 KSYVYIRSEYPHAIEKMEKAVRLSAA---------LVAPFEVEVRVGAGAYVCGEETSLL 250 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G+ R KPP PA GL+G PT VNNV ++A VP IL +GA Y+ G +RGT Sbjct: 251 NSLEGKRGEVRAKPPLPALEGLFGKPTVVNNVLTLAAVPFILAQGAQEYANVGLGRSRGT 310 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++G+V + E IT EL+ + GG G + AV GG P Sbjct: 311 MPIQLAGNVRHGGLFEVGFGITLGELVNEIGGGTASGRP-VRAVQVGGPLGAYHPPSDFH 369 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G A + V D + D+ F ESCG+CTPCR G+ + Sbjct: 370 -LPFDYEAFAAADGLIGHAGITVFDDTADMSAQARFAMEFCAAESCGKCTPCRIGSTRGV 428 Query: 360 RVMERLVK--GIAQKR-------------------EIDLLYEVSKNIEGRTICALGDAAA 398 +++R+ G R EI LL ++ + ++ ++CALG Sbjct: 429 ELIDRIRARSGRRPDRVEALPQMHNARKAERSLADEITLLEDLCETMKFGSLCALGGFTP 488 Query: 399 WPIQGLIKNFRPLI 412 +P+ ++NF Sbjct: 489 YPVLSALRNFPEDF 502 >gi|330860331|emb|CBX70644.1| NADH-quinone oxidoreductase subunit F [Yersinia enterocolitica W22703] Length = 367 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 147/346 (42%), Positives = 205/346 (59%), Gaps = 6/346 (1%) Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 1 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 60 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++IVH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 61 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 120 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251 PFPA+ G++G PT VNNVE++ VP IL G WY G G+ N+ GTKL SG V P Sbjct: 121 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 180 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + GG+R G A PGG+ L A + MD++ + + Sbjct: 181 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 238 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ L +G Q Sbjct: 239 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 298 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 +I+ L ++ + + G+T CA A P+Q IK FR E I Sbjct: 299 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 344 >gi|319760612|ref|YP_004124550.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer str. BVAF] gi|318039326|gb|ADV33876.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer str. BVAF] Length = 444 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 158/407 (38%), Positives = 225/407 (55%), Gaps = 8/407 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + S+ + + K + + I+ + S LRGRGG GF TG+KWS M K S Sbjct: 24 PVWLHEYQSKNGYFALRKAITCLSKLDIVELINKSRLRGRGGGGFLTGLKWSMMIKHQSI 83 Query: 76 -RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +YL+ NADE EPGT KDR +M PH L+EG +IA +A+ A+I++R E++ + Sbjct: 84 LKVNYLICNADEMEPGTYKDRLLMERLPHLLLEGILIAGYALSVSVAYIFLRYEYMIAAK 143 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L A+ E ++GLLG N + +DI +H GAG YICGEETAL+ +LEGK+ PR KP Sbjct: 144 YLNFAISELRSAGLLGKNILNTEFSLDIFLHTGAGRYICGEETALINALEGKRAVPRSKP 203 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYP 251 PFPA GL+G PT +NNVE++ +P I+ G SWY N+ GTKL SG V P Sbjct: 204 PFPAQSGLWGKPTCINNVETLCNIPGIIEYGVSWYKNLSNKYSNDSGTKLMGFSGRVKNP 263 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E IT E++E + G+ L A PGG+S L + MD+ + + Sbjct: 264 GVWELPFGITAREILEDYARGM-CDGLYLKAWQPGGASTDFLIPNHL-DTPMDFHSISII 321 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS GT I +D + ++I + L F+ ESCG CTPCREG W+++++ L K Sbjct: 322 GSRFGTGMAIAIDNTVNMISLMRNLEEFFARESCGWCTPCREGLPWIVKLLISLEKNNGD 381 Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +I++L + + G+T CA A P+Q +K FR E I Sbjct: 382 PGDIEILEHLCNLLGPGKTFCAHAPGAIEPLQSALKYFRSEFEAGIH 428 >gi|220931145|ref|YP_002508053.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] gi|219992455|gb|ACL69058.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] Length = 408 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 137/385 (35%), Positives = 211/385 (54%), Gaps = 6/385 (1%) Query: 31 NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90 + + L+ + II E+K SGLRGRGGAGF TG+KW K + Y++ N DE EPG Sbjct: 22 ALKRALDMDKKDIIEELKKSGLRGRGGAGFPTGLKWELALKEKAG-EKYIICNGDEGEPG 80 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 T KDR ++ + P ++EG +I ++ IGAH +IY+RGE+ + + E G+LG Sbjct: 81 TFKDRYLLENSPLKVLEGILIGAYTIGAHQGYIYIRGEYALPINIFRQVIKEAKKRGILG 140 Query: 151 SNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 + Y D+ + GAGAY+CG+ET+L+ S+EGK+G R+KPP+P GL+ PT VN Sbjct: 141 NRVMGSDYSFDLKLIKGAGAYVCGDETSLINSIEGKRGTSRIKPPYPTRQGLFNKPTVVN 200 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI-TFDELIEK 268 NVE++A I+ +GA Y G E +RGTKL +SG + P E T ELI+ Sbjct: 201 NVETLAAAAEIILQGADKYGSMGTEQSRGTKLVCLSGDICNPGVYEVEFGTMTIKELIDT 260 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 GG++ L VIPGG S L ++ Y+ +++ GS LG+ AV+V+ Sbjct: 261 FGGGVKCS-SGLKFVIPGGISTSVLKDDEL-DIPYTYEDIEKKGSSLGSGAVVVVSEDHY 318 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM-ERLVKGIAQKREIDLLYEVSKNIEG 387 + + +S F+ E+CG C PCREG + ++ ++ G + E L+ ++ + I Sbjct: 319 LPDLMLNVSRFFMDETCGTCFPCREGNRRVHLLLKNKISDGRFDRDEKKLISDIGRAIHL 378 Query: 388 RTICALGDAAAWPIQGLIKNFRPLI 412 C LG + + ++ F + Sbjct: 379 AARCGLGQTSLNFVTSVLNKFEDEL 403 >gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B [Herminiimonas arsenicoxydans] gi|133737538|emb|CAL60581.1| NADH dehydrogenase (Quinone) [Herminiimonas arsenicoxydans] Length = 567 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 147/393 (37%), Positives = 221/393 (56%), Gaps = 18/393 (4%) Query: 22 DSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + G ++ + K + E+ + ++ ++ SGLRG GGAGF G KW + P Sbjct: 190 EYSKVGGYELLKKCISGERDVESVLKTMEDSGLRGLGGAGFPAGRKWRIVRGEKG--PRL 247 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 + VN DE EPGT KDR + +PH +EG +IA++A+ +IY+R E+ R L+A Sbjct: 248 MAVNIDEGEPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRVMLEAE 307 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + + A N + +I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A V Sbjct: 308 LAKLKA------NPPIANMPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQV 361 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+G PT +N E++ V IL +G W++ GR +G + +S+SG V P Sbjct: 362 GLFGRPTLEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAG 421 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 IT ELI++HCGG+ +PGG+S LPA M +D+D L+ G +G+AA Sbjct: 422 ITIQELIDEHCGGM-LDGQTFYGYLPGGASGGILPAS-MNDIPLDFDTLQPYGCFIGSAA 479 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 VIVM ++A + F+KHESCGQCTPCR GT ++++ K ++ LL Sbjct: 480 VIVMSDKDTAVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKK------PKWDVGLLE 533 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++S + +IC LG AA PI ++K F + Sbjct: 534 DLSLVMRDSSICGLGQAAPNPIDCVVKYFPHEL 566 >gi|257082642|ref|ZP_05577003.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis E1Sol] gi|257085351|ref|ZP_05579712.1| NADH dehydrogenase [Enterococcus faecalis Fly1] gi|256990672|gb|EEU77974.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis E1Sol] gi|256993381|gb|EEU80683.1| NADH dehydrogenase [Enterococcus faecalis Fly1] Length = 432 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYSEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|229550120|ref|ZP_04438845.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200] gi|307277473|ref|ZP_07558565.1| HymB family protein [Enterococcus faecalis TX2134] gi|312952393|ref|ZP_07771268.1| HymB family protein [Enterococcus faecalis TX0102] gi|229304706|gb|EEN70702.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200] gi|306505738|gb|EFM74916.1| HymB family protein [Enterococcus faecalis TX2134] gi|310629777|gb|EFQ13060.1| HymB family protein [Enterococcus faecalis TX0102] gi|315153356|gb|EFT97372.1| HymB family protein [Enterococcus faecalis TX0031] gi|315155867|gb|EFT99883.1| HymB family protein [Enterococcus faecalis TX0043] gi|315157966|gb|EFU01983.1| HymB family protein [Enterococcus faecalis TX0312] Length = 432 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 144/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK GQPR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGQPRVKPPHLADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|257086846|ref|ZP_05581207.1| NADH dehydrogenase [Enterococcus faecalis D6] gi|256994876|gb|EEU82178.1| NADH dehydrogenase [Enterococcus faecalis D6] gi|315027369|gb|EFT39301.1| HymB family protein [Enterococcus faecalis TX2137] Length = 432 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAG YICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGTYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|195149010|ref|XP_002015452.1| GL11014 [Drosophila persimilis] gi|194109299|gb|EDW31342.1| GL11014 [Drosophila persimilis] Length = 445 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 193/420 (45%), Positives = 254/420 (60%), Gaps = 22/420 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W + +LEKG DWI+ + Sbjct: 43 LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W+F+ S + LV+N E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A Sbjct: 88 ----WNFLRSAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG ++ G DI+V G Y+CGEETAL++ Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK G+PR +PPF G + P V N ESIAV+PTILRRGASW++ GR N GTK Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG VN PCTVEE MS+ +LIEKH GG+RGGWDNLLA+ PGG S P + Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD++ L+ GS LG+ A+IV+++ +D ++ + R FY+ +C QCT CR+G W+ Sbjct: 323 VLMDFECLEAAGSSLGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +R VKG A EID + K I+ IC L L+ NFRP IE+RI Q+ Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442 >gi|257415999|ref|ZP_05592993.1| NADH dehydrogenase [Enterococcus faecalis AR01/DG] gi|257157827|gb|EEU87787.1| NADH dehydrogenase [Enterococcus faecalis ARO1/DG] Length = 432 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYSEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 + ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRTLELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|315147886|gb|EFT91902.1| HymB family protein [Enterococcus faecalis TX4244] gi|315150637|gb|EFT94653.1| HymB family protein [Enterococcus faecalis TX0012] Length = 432 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|256618969|ref|ZP_05475815.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200] gi|307288115|ref|ZP_07568125.1| HymB family protein [Enterococcus faecalis TX0109] gi|256598496|gb|EEU17672.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200] gi|306500851|gb|EFM70169.1| HymB family protein [Enterococcus faecalis TX0109] gi|315164269|gb|EFU08286.1| HymB family protein [Enterococcus faecalis TX1302] gi|327535030|gb|AEA93864.1| NADH-quinone oxidoreductase subunit F [Enterococcus faecalis OG1RF] Length = 432 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|168700382|ref|ZP_02732659.1| NuoF2 NADH I CHAIN F [Gemmata obscuriglobus UQM 2246] Length = 455 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 179/444 (40%), Positives = 259/444 (58%), Gaps = 26/444 (5%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIIN-EVKASGLRGRGGAGFSTG 63 + + + L + G ++ + ++L+ + + +VK +GLRGRGGAGF TG Sbjct: 4 EPVLLARINKPNSGKLEGYRADGGYETIARVLKDKQPLDVTTQVKDAGLRGRGGAGFPTG 63 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KW+F+PK YL VNADESEP T +R +M +PH ++EG ++A +AI + AF Sbjct: 64 LKWTFLPKDHPGPV-YLCVNADESEPCTYNNRILMEKDPHQVLEGIMLACYAIKSPKAFY 122 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 YVR E+ SL AAV+E YA+G LG +D+DI++H GAGAYICGEET L+ESL Sbjct: 123 YVRYEYGDSYRSLAAAVEELYAAGFLGKGIFGSSFDLDIVLHRGAGAYICGEETGLIESL 182 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-------- 234 EGK+ PR+KPPFPA G + PT VNNVE++A V I++RG W+ G Sbjct: 183 EGKRAWPRIKPPFPAIEGAFRKPTIVNNVETLACVTQIMKRGKEWFQSLGVPPDPKNPRD 242 Query: 235 -NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293 + G KL++++GHV VE M IT +L+EKH GG+ G AV PGG S+ + Sbjct: 243 AGSYGPKLYTLAGHVEKSVCVEVPMGITIRDLVEKHGGGVWKGRKA-KAVNPGGLSMGFV 301 Query: 294 PAGQMR---------GAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 +D++G + GLGTAAV V+D T ++ + + F+ HE Sbjct: 302 DVNAPLKGEDGKTEYDIPLDFNGPGRVQCLGLGTAAVTVIDDQTSMVDVLHNVCQFFSHE 361 Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK---NIEGRTICALGDAAAWP 400 SCGQCTPCREGTGWM+++ +RL +G+ +K ++D+L +V+ + G TIC L D A WP Sbjct: 362 SCGQCTPCREGTGWMLKITDRLRRGLGRKEDLDILVDVADRIGIMPGTTICGLSDGAGWP 421 Query: 401 IQGLIKNFRPLIEERIDQYHRCNF 424 ++ I+ FR E I + + Sbjct: 422 VKTAIRKFRAEFEAAIKSGAKSKY 445 >gi|115523732|ref|YP_780643.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] gi|115517679|gb|ABJ05663.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53] Length = 428 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 167/418 (39%), Positives = 235/418 (56%), Gaps = 12/418 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 S +D G +D L + D ++ V+ASGLRGRGGAGF TG KW M K Sbjct: 14 RTPHSFADWQRLGGYDAFRTALNRHSPDALVAIVEASGLRGRGGAGFLTGTKWRLMRKAA 73 Query: 74 ---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + P YL VN DE EPG+ KDR +M PH L+EG +IA++A+GA I VR + Sbjct: 74 LVAGEGPRYLCVNGDEMEPGSFKDRLLMEALPHQLLEGAMIAAYAVGASEVIILVRDAYR 133 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 +L A+ E ++GLLG N G+ + + VH AG YI GEETAL+ ++EG + P Sbjct: 134 TAAAALNRAIVEIESAGLLGRNILGSGFALKMRVHASAGRYIVGEETALIAAIEGDRPVP 193 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R +PP+PA GL+G PTTVNNVE+++ +P I++ GA W+S + GTKL+ +SG V Sbjct: 194 RARPPYPAQSGLWGRPTTVNNVETLSNLPLIVQHGAEWFSALSHTSEGGTKLYGVSGRVA 253 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P +E M ELIE CGGIR G L A PGG + L MD++ +K Sbjct: 254 RPQLIEAPMGTPARELIE-LCGGIRDGGK-LRAFQPGGGATAFL-EQAELDLPMDFEHMK 310 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + GS LGT AVIV+D ++ + AI R + FY ESCG CTPCR+G W+ +++++L G Sbjct: 311 KAGSSLGTGAVIVLDEASCPVAAIARHARFYARESCGLCTPCRDGLPWVAKLLDQLEAGQ 370 Query: 370 AQKREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 + IDLL+ GR+ C L A P++ ++ F + + + C + Sbjct: 371 GTRETIDLLHMHVDLAGPSGRSFCDLNTGALTPVRSGLQRFGDIFAAHLGGH--CPVR 426 >gi|226486988|emb|CAX75359.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma japonicum] Length = 353 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 194/310 (62%), Positives = 243/310 (78%), Gaps = 1/310 (0%) Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGA 169 IA A+GA+ A+IY+RGEF E ++Q A+ E Y +G LG N+ G++ D+ +H GAGA Sbjct: 28 IAGKAMGANVAYIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGA 87 Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229 YICGEETAL+ES+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG W++ Sbjct: 88 YICGEETALIESIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFA 147 Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 FGRE NRGTKLF+ISGHVN PCTVEE MSI +LIE+H GG+ GGWDNLLAVIPGGSS Sbjct: 148 SFGRERNRGTKLFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSS 207 Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 P LP +MD+D L + SGLGTAA+IVM+RS D++ I RL FY+HESCGQCT Sbjct: 208 TPLLPKDICSTVLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCT 267 Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 PCREG WM ++M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FR Sbjct: 268 PCREGCRWMGQIMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFR 327 Query: 410 PLIEERIDQY 419 P +E R ++ Sbjct: 328 PELEARFAKH 337 >gi|213409916|ref|XP_002175728.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces japonicus yFS275] gi|212003775|gb|EEB09435.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces japonicus yFS275] Length = 418 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 182/413 (44%), Positives = 247/413 (59%), Gaps = 5/413 (1%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 RIF N+ +S++ + +G + + IL+K + +IN + S LRGRGG+GF TG KW Sbjct: 3 RIFPNVNLNVARSIAFAKKQGRYSKLSDILKKKGEILINTISRSMLRGRGGSGFYTGRKW 62 Query: 67 SFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 + YLVVNA E EPG+ KDR ++ PHT+IEG ++++ AIGA +I Sbjct: 63 ESVVATAELLKHPMRYLVVNASEGEPGSFKDRYLLASVPHTVIEGSIMSAKAIGASACYI 122 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182 VR E+ +E LQ A++E Y G LG N + +DI +H G G YI GEETALLESL Sbjct: 123 SVRAEYYKEALHLQEAINEAYEEGYLGKNILGTDFSLDIFIHRGEGNYISGEETALLESL 182 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 EGK +PR++PPFP G++GC T VNNVE+IA +P IL G W+ G NN GTKLF Sbjct: 183 EGKAAKPRVRPPFPTEHGVFGCATAVNNVETIANIPCILENGDEWFRSLGSPNNYGTKLF 242 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 ISG V P EE +SI ELIE H GG+ GGWD+L+AV PGG S+ Q + Sbjct: 243 CISGDVRQPNVYEERLSIPLKELIETH-GGVIGGWDSLVAVFPGGPSMGICNKEQCEHML 301 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MDYD L+++G+GLGTA+VIV++ + +AI S FYK E+C +C CR GT + ++ Sbjct: 302 MDYDYLRQIGTGLGTASVIVLNDIDKVFEAILNFSKFYKKETCRKCLACRNGTKIINELL 361 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 E + +G A I L +VS + TIC A + + KNF I+ R Sbjct: 362 ELVREGKATPSVITDLRQVSNYVTKDTICNFSAAPSLLLNSYFKNFPADIQRR 414 >gi|315145702|gb|EFT89718.1| HymB family protein [Enterococcus faecalis TX2141] Length = 432 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQTFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|255975952|ref|ZP_05426538.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T2] gi|307279196|ref|ZP_07560254.1| HymB family protein [Enterococcus faecalis TX0860] gi|255968824|gb|EET99446.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T2] gi|306504321|gb|EFM73533.1| HymB family protein [Enterococcus faecalis TX0860] Length = 432 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLTDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 567 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 149/407 (36%), Positives = 226/407 (55%), Gaps = 20/407 (4%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMK 65 I + S + G + + K + E+ + +I ++ SGLRG GGAGF +G K Sbjct: 178 IVQAEGSITDFS--AYQNEGGYALLKKCVSGERDVESVIKTMEDSGLRGLGGAGFPSGRK 235 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W + P + VN DE EPGT KDR + +PH +EG +IA++A+ +IY+ Sbjct: 236 WRIVRGEKG--PRLMAVNIDEGEPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYL 293 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 R E+ R L+A +++ A N + +I + GAGAYICGEE+A++ES+EGK Sbjct: 294 RDEYHGCRTMLEAELEKLKA------NPPIANMPEIFLRRGAGAYICGEESAMIESIEGK 347 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +G PRL+PP+ A VGL+G PT +N E++ V IL +G W++ GR +G + +S+S Sbjct: 348 RGMPRLRPPYVAQVGLFGRPTLEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVS 407 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P IT ELI++HCGG+ +PGG+S LPA M +D+ Sbjct: 408 GRVKNPGVKLAPAGITIQELIDEHCGGM-LEGQTFYGYLPGGASGGILPAS-MNAIPLDF 465 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L+ G +G+AAVIV+ ++A + F+KHESCGQCTPCR GT ++++ Sbjct: 466 DTLQPYGCFIGSAAVIVLSDKDTAVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKK- 524 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 K ++ LL ++S+ + +IC LG AA PI ++K F + Sbjct: 525 -----PKWDVGLLEDLSQVMRDSSICGLGQAAPNPIDCVVKYFPHEL 566 >gi|227518655|ref|ZP_03948704.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104] gi|229545926|ref|ZP_04434651.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322] gi|256853026|ref|ZP_05558396.1| NADH dehydrogenase [Enterococcus faecalis T8] gi|256965224|ref|ZP_05569395.1| NADH dehydrogenase [Enterococcus faecalis HIP11704] gi|257419201|ref|ZP_05596195.1| NADH dehydrogenase [Enterococcus faecalis T11] gi|307273327|ref|ZP_07554572.1| HymB family protein [Enterococcus faecalis TX0855] gi|307291376|ref|ZP_07571260.1| HymB family protein [Enterococcus faecalis TX0411] gi|227073912|gb|EEI11875.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104] gi|229308994|gb|EEN74981.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322] gi|256711485|gb|EEU26523.1| NADH dehydrogenase [Enterococcus faecalis T8] gi|256955720|gb|EEU72352.1| NADH dehydrogenase [Enterococcus faecalis HIP11704] gi|257161029|gb|EEU90989.1| NADH dehydrogenase [Enterococcus faecalis T11] gi|306497607|gb|EFM67140.1| HymB family protein [Enterococcus faecalis TX0411] gi|306509854|gb|EFM78879.1| HymB family protein [Enterococcus faecalis TX0855] gi|315029989|gb|EFT41921.1| HymB family protein [Enterococcus faecalis TX4000] gi|315575555|gb|EFU87746.1| HymB family protein [Enterococcus faecalis TX0309B] gi|315580003|gb|EFU92194.1| HymB family protein [Enterococcus faecalis TX0309A] Length = 432 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|255659120|ref|ZP_05404529.1| protein HymB [Mitsuokella multacida DSM 20544] gi|260848565|gb|EEX68572.1| protein HymB [Mitsuokella multacida DSM 20544] Length = 416 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 132/406 (32%), Positives = 223/406 (54%), Gaps = 4/406 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + N S+ M+ G ++ + K + + I + + A ++GRGGA + G KWS Sbjct: 7 LTKNFGKYDTSSIGSYMNVGGFEALRKAVTMDPEEITDLLTAVKIKGRGGAEYPLGRKWS 66 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + ++ NADE E T KDR+++ H+P LIE +IA++ +GA FIY+R Sbjct: 67 -QARAVRGERKVVICNADEGETTTFKDRELICHDPFNLIEAMIIAAYVVGASDGFIYMRA 125 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R L A+ + G LG+N G+D DI ++ GAGAY+CGE TAL+ S+EGK Sbjct: 126 EYACFRPLLLNAIRQAKNYGFLGTNILGRGFDFDIHLYSGAGAYVCGEGTALIRSIEGKA 185 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR+KPPF G++ PT +NNVE++++VP +L Y+ G + GTKL S++G Sbjct: 186 GRPRMKPPFIKVSGVFARPTCLNNVETLSLVPHLLLDEEGVYASCGSGESIGTKLVSVAG 245 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 +VN+P E T E++ + GGI+ + + GG+S + + Y+ Sbjct: 246 NVNHPGVFEIPFGTTVREILYELAGGIQHDRK-IRLIQFGGAS-GKIADDSILDTPYTYE 303 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L+ G +G+ ++V+D T ++ + F+ ESCGQCTPCREG + +++++ Sbjct: 304 DLRAAGVMVGSGGMLVIDERTSVLDFLRMNQEFFWEESCGQCTPCREGNLHIKIILDKMA 363 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 G A + +I ++ ++++ + ++C LG+ A + +K F L Sbjct: 364 TGTATREDIAIMMKIARVMSMSSLCGLGETAQNSLLSAMKVFPDLF 409 >gi|315160211|gb|EFU04228.1| HymB family protein [Enterococcus faecalis TX0645] Length = 432 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQLMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 745 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 149/413 (36%), Positives = 221/413 (53%), Gaps = 26/413 (6%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAG 59 L D T+++ +++G + ++ + + ++ I+ ++++ LRG GGAG Sbjct: 350 LKQHD---THVHVPDYVEYESYIAQGGYTLLNSLRSGKTSKEDILKALESASLRGLGGAG 406 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG KW + P + +N DE EPGT KDR + +PH IEG +I + + A Sbjct: 407 FPTGRKWRAVLGEPG--PRLMAINGDEGEPGTFKDRFYLETDPHRFIEGMLIGAHIVEAA 464 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ RE L + A G + + GAGAYICGEE+ALL Sbjct: 465 EVYIYLRDEYPASREILAREIARLPAGGP-----------TLHLRRGAGAYICGEESALL 513 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ES+EGK+G PR KPP+P VGL+G PT +NNVE++ V I+ +G W+ GR + G Sbjct: 514 ESIEGKRGMPRHKPPYPFQVGLFGLPTLINNVETLWWVRDIVEKGGEWWQAQGRNDRHGL 573 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +S+SG V P +T ELIE+ CGG+ A +PGG+S LPA M Sbjct: 574 RSYSVSGRVKNPGVKLAPAGVTITELIEEFCGGMA-DGHKFRAYLPGGASGGILPAS-MN 631 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D+ L++ G +G+AAV+V+ D+ A L F++ ESCGQCTPCR GT Sbjct: 632 DIPLDFGTLEKYGCFIGSAAVVVLSDKDDVKDAALNLMKFFEDESCGQCTPCRVGTQKAA 691 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +ME + DLL E+S+ + +IC LG AA+ P+ +IK F Sbjct: 692 ALME------TRAWNRDLLNELSQTMRDASICGLGQAASNPLTSVIKYFPEEF 738 >gi|315174470|gb|EFU18487.1| HymB family protein [Enterococcus faecalis TX1346] Length = 432 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R ++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKKFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK +PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTERPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|256958880|ref|ZP_05563051.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|257078911|ref|ZP_05573272.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1] gi|294779582|ref|ZP_06744976.1| HymB family protein [Enterococcus faecalis PC1.1] gi|307271121|ref|ZP_07552404.1| HymB family protein [Enterococcus faecalis TX4248] gi|256949376|gb|EEU66008.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|256986941|gb|EEU74243.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1] gi|294453372|gb|EFG21780.1| HymB family protein [Enterococcus faecalis PC1.1] gi|306512619|gb|EFM81268.1| HymB family protein [Enterococcus faecalis TX4248] gi|315033792|gb|EFT45724.1| HymB family protein [Enterococcus faecalis TX0017] gi|315036877|gb|EFT48809.1| HymB family protein [Enterococcus faecalis TX0027] gi|323480624|gb|ADX80063.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Enterococcus faecalis 62] gi|329571419|gb|EGG53106.1| putative protein HymB [Enterococcus faecalis TX1467] Length = 432 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSGEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLTDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRKEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|315166637|gb|EFU10654.1| HymB family protein [Enterococcus faecalis TX1341] Length = 432 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNVRQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] Length = 573 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 152/422 (36%), Positives = 228/422 (54%), Gaps = 25/422 (5%) Query: 3 TDQDRIFTNLYGLQGKSLS-------DSMSRGHWDNVDKIL--EKGRDWIINEVKASGLR 53 + +I +G K+L + G + + + ++ + +I+ + +SGLR Sbjct: 162 ANHHQIMEAAFGQHTKALPPHCASEPQYKATGGYQLLQACVSGQRTVESVIDTLSSSGLR 221 Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 G GGAGF G KW+ + + + P + VN DE EPGT KDR + PH +EG +IA+ Sbjct: 222 GLGGAGFPAGKKWAIVREQTA--PRLMAVNIDEGEPGTFKDRSYLERNPHQFLEGMLIAA 279 Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173 +A+ A +IY+R E+ R LQ + A + I + GAGAYICG Sbjct: 280 WAVNASAIYIYLRDEYHACRSMLQNELALLKAKP------PMPNMPVIELRRGAGAYICG 333 Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233 EE+A+LES+EGK+G PRL+PP+ A VGL+ PT V+N E++ VP IL +GA W++ GR Sbjct: 334 EESAMLESIEGKRGLPRLRPPYVAQVGLFNKPTLVHNFETLYWVPVILEKGAQWFASQGR 393 Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293 G + FS+SG VN P IT +ELI ++CGG+ L +PGG+S L Sbjct: 394 HGRGGFRSFSVSGRVNKPGIHLAPAGITLNELISEYCGGM-QTGHTLYGYLPGGASGGIL 452 Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353 PA + +D+D L+ G +G+AA++V ++ + L F+ HESCGQCTPCR Sbjct: 453 PA-VLADVPLDFDTLQPHGCFIGSAAIVVFSQADSAVNMARNLMRFFVHESCGQCTPCRT 511 Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 GT + ++ + + LL E+S + +IC LG AA PI +I+ F +E Sbjct: 512 GTAKALALI------NQPQWNVPLLQELSAVMRDASICGLGQAAPNPIDCVIRYFPQELE 565 Query: 414 ER 415 R Sbjct: 566 SR 567 >gi|293383048|ref|ZP_06628966.1| protein HymB [Enterococcus faecalis R712] gi|293388209|ref|ZP_06632730.1| protein HymB [Enterococcus faecalis S613] gi|312907363|ref|ZP_07766354.1| HymB family protein [Enterococcus faecalis DAPTO 512] gi|312909979|ref|ZP_07768827.1| HymB family protein [Enterococcus faecalis DAPTO 516] gi|291079713|gb|EFE17077.1| protein HymB [Enterococcus faecalis R712] gi|291082393|gb|EFE19356.1| protein HymB [Enterococcus faecalis S613] gi|310626391|gb|EFQ09674.1| HymB family protein [Enterococcus faecalis DAPTO 512] gi|311289937|gb|EFQ68493.1| HymB family protein [Enterococcus faecalis DAPTO 516] Length = 432 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +S+ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVSEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L + + A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVSSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|312904133|ref|ZP_07763301.1| HymB family protein [Enterococcus faecalis TX0635] gi|310632609|gb|EFQ15892.1| HymB family protein [Enterococcus faecalis TX0635] gi|315578478|gb|EFU90669.1| HymB family protein [Enterococcus faecalis TX0630] Length = 432 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKSRGLYEVNLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+C PCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCIPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|198455798|ref|XP_001360108.2| GA20825 [Drosophila pseudoobscura pseudoobscura] gi|198135400|gb|EAL24682.2| GA20825 [Drosophila pseudoobscura pseudoobscura] Length = 445 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 192/420 (45%), Positives = 253/420 (60%), Gaps = 22/420 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W + +LEKG DWI+ + Sbjct: 43 LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W+F+ S + LV+N E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A Sbjct: 88 ----WNFLRCAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG ++ G DI+V G Y+CGEETAL++ Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK G+PR +PPF G + P V N ESIAV+PTILRRGASW++ GR N GTK Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF+ISG VN PCTVEE MS+ +LIEKH GG+RGGWDNLLA+ PGG S P + Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD++ L+ GS G+ A+IV+++ +D ++ + R FY+ +C QCT CR+G W+ Sbjct: 323 VLMDFECLEAAGSSFGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + +R VKG A EID + K I+ IC L L+ NFRP IE+RI Q+ Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442 >gi|206602860|gb|EDZ39341.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 453 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 149/416 (35%), Positives = 224/416 (53%), Gaps = 11/416 (2%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS + G ++ + ++L I E+K +GLRGRGG+GF T +KW + Sbjct: 29 GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWEKVA-NHRI 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 R Y+V N E EPG+ KD ++ PH ++EG +IASFA+ A A ++V+ F R ++ Sbjct: 88 REKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVQARKAILFVKDSFPRGIDA 147 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKP 193 L+ A DE G LG + +D+ + G AYI GEETALLE+LEG+ P Sbjct: 148 LKKARDEAREEGFLGDRILGSEFSIDLEIFVGPSAYIAGEETALLEALEGRLPKPRPKPP 207 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 +P + GLY CPT VNNVE+ A V I R GA W+ G + GT +FS++G V P Sbjct: 208 GYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVRRPIV 267 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 VE + + L+E++ GG + + + PGG S LPA + +DYD L+ +GS Sbjct: 268 VELPLGTSLRTLVEEYAGGAP-DGERIESFYPGGPSFGVLPAKDL-DTPLDYDALRALGS 325 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G+G+ VIV+ + + + FY+ SCGQC PCR GT + ++E G A K Sbjct: 326 GIGSGGVIVLSDKDCPVATARQFADFYETGSCGQCPPCRIGTENLHEILELFETGKASKE 385 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424 + + +S I+GR C L A+A+ ++ L+++F + +D + HR F Sbjct: 386 NVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDKGCRRQHRTPF 441 >gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Shewanella woodyi ATCC 51908] Length = 562 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 145/397 (36%), Positives = 216/397 (54%), Gaps = 20/397 (5%) Query: 18 KSLSDSMSRGHWDNVD--KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +SL+D ++ G + + K + ++V ++GLRG GGAGF +G KWSF+ Sbjct: 184 QSLTDYLAGGGYQFYEQMKASTLDPIEVEDKVFSAGLRGMGGAGFPSGKKWSFVRAESG- 242 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P Y+ VN DE EPGT KDR + +PH +EG +IA+ A+ A ++Y+R E+ Sbjct: 243 -PRYMAVNGDEGEPGTFKDRYYLETQPHLFMEGMLIAAQAVEAEHIYLYLRDEYPAALTI 301 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L+ + E ++ ++ +GY I + GAGAYICGEE+A++ES+EGK+G PR +PPF Sbjct: 302 LKREIAELESANIV----PIGY---IELRRGAGAYICGEESAMIESIEGKRGLPRHRPPF 354 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A G++ PT V+N+E++ V I R G + + G + +S+SG V P Sbjct: 355 VAQKGIFNQPTLVHNIETLYWVARICREGGEILTSVSKNGRTGLRSYSVSGRVINPGVYL 414 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T +LIE G I L A PGG S LPA + +D+D L+ GS + Sbjct: 415 LPAGSTITDLIEAAGGMI--QGHRLKAYQPGGPSSGILPAS-LADVPLDFDTLQPHGSLI 471 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V+ I A + F+ HE+CGQCTPCR G +++M K + Sbjct: 472 GSAAVLVLSDKDSIRDAALNMMEFFDHENCGQCTPCRVGCEKAVKLM------REDKWDT 525 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S +E +IC LG AA PI+ IK+F + Sbjct: 526 SLLSELSSVMEDASICGLGQAAPNPIRLTIKHFPDEV 562 >gi|312900655|ref|ZP_07759952.1| HymB family protein [Enterococcus faecalis TX0470] gi|311292136|gb|EFQ70692.1| HymB family protein [Enterococcus faecalis TX0470] Length = 432 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNVRQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLLRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|255972897|ref|ZP_05423483.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T1] gi|257422721|ref|ZP_05599711.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis X98] gi|255963915|gb|EET96391.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T1] gi|257164545|gb|EEU94505.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis X98] Length = 417 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 140/394 (35%), Positives = 219/394 (55%), Gaps = 4/394 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +++ +D + + + + I+NE+ + LRGRGGA + G KW + Sbjct: 6 DVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYHAK-GTTK 64 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q Sbjct: 65 YIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQE 124 Query: 139 AVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+D +G LG N G++ DI + GAGAYICGE +ALL S+EGK GQPR+KPP Sbjct: 125 ALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGQPRVKPPHL 184 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+VGLY PT VNNVES A VP ILR G + G + GTKL +SGH+ E Sbjct: 185 ADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEV 244 Query: 257 SMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 ++ +E+I + GG L + GG S P +R + Y+ L + Sbjct: 245 NLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSV 304 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ Sbjct: 305 GSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDL 364 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++ ++ + C LG + A P++ + F Sbjct: 365 PRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 398 >gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein [Leptothrix cholodnii SP-6] gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Leptothrix cholodnii SP-6] Length = 627 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 156/391 (39%), Positives = 215/391 (54%), Gaps = 18/391 (4%) Query: 31 NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVVNADES 87 + L +G +++EVK S LRGRGGAG+ TG KW + D HY+V NADE Sbjct: 215 ALAAALARGWQALLDEVKQSNLRGRGGAGYQTGRKWELCREAPGNTPDNTHYVVCNADEG 274 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EPGT KDR ++ +L EG IA FAIGA F+Y+RGE+ E LQA + + Sbjct: 275 EPGTFKDRVLLSRYADSLFEGMTIAGFAIGARQGFVYLRGEYRYLLEPLQAVLQRRREAN 334 Query: 148 LLGS--NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 LLG+ + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PP+P G P Sbjct: 335 LLGAAIQGREGFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPYPVEHGYLDEP 394 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T VNNVE+ V I GA+W++G G + GTK+ S+SG P E + Sbjct: 395 TIVNNVETYCAVTHIAVHGAAWWAGIGTPKSTGTKIHSVSGDCERPGIYEYPYGTRIGRI 454 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 +E + AV GG S CL A + I D A +V DR Sbjct: 455 LEDCGA------RDTQAVQVGGPSGVCLSAFEFGRRIAFED-------VPTAGAFMVFDR 501 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 S D+ + + F+ HESCG CTPCR GT +++ M++L G + ++D+L+E+ K + Sbjct: 502 SRDMFEVARNFAQFFAHESCGFCTPCRVGTALVVKRMDKLAAGQGSRHDVDVLFELDKLM 561 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 T C LG AA P++ I FRP E+R+ Sbjct: 562 HTATHCGLGGAACNPLRDTIAKFRPAYEQRL 592 >gi|195119866|ref|XP_002004450.1| GI19938 [Drosophila mojavensis] gi|193909518|gb|EDW08385.1| GI19938 [Drosophila mojavensis] Length = 470 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 185/419 (44%), Positives = 247/419 (58%), Gaps = 22/419 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W +++ G DWI+ E Sbjct: 71 LVDCDRIFQNLYGRHDWRLQGARKRGDWHRTADLIKMGPDWIMGE--------------- 115 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 W ++ KV + + L+VN E EPGTCKDR+I+RHEPH +IEGC++A A+G Sbjct: 116 ----WEYLRKVQA-KGKVLIVNCAEGEPGTCKDREILRHEPHKIIEGCLLAGCAMGCERC 170 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +YVR F E +LQ A+ E Y GL+G NS + G +DIIV G Y+ GEETAL+ Sbjct: 171 IVYVRNRFYNEACNLQLALAEAYCCGLIGCNSCETGVKLDIIVQRG-DRYLTGEETALVN 229 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PPF G + P V N E++AV+PT+LRRGA W++ G + N GTK Sbjct: 230 CLMGKLARPRRRPPFLHEQGYFDHPCVVVNTETLAVLPTMLRRGAVWFTSLGSDKNFGTK 289 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LF ISGHV PCTVEE MS+ +IE+H GG+ GGWDNLLA+ PGG S P + A Sbjct: 290 LFCISGHVVNPCTVEEEMSMPLRNIIERHAGGVCGGWDNLLALWPGGLSTPLMGAACAGQ 349 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +MD+D L GS LGTAA+IV+ + D + + F+ ++C QCTPCR+G W+ Sbjct: 350 VLMDFDHLSAAGSELGTAAIIVISKDCDPLLVMQHSIEFFMDQTCKQCTPCRDGAIWLPE 409 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + VKG A + I+ + + K +E TIC L D+ A LI++FRPLIE RI +Y Sbjct: 410 LFSNFVKGEAVPQMIEFVDIIRKKMENSTICGLCDSQANLAGSLIQHFRPLIEARILEY 468 >gi|260886836|ref|ZP_05898099.1| protein HymB [Selenomonas sputigena ATCC 35185] gi|330839360|ref|YP_004413940.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185] gi|260863435|gb|EEX77935.1| protein HymB [Selenomonas sputigena ATCC 35185] gi|329747124|gb|AEC00481.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185] Length = 416 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 222/413 (53%), Gaps = 7/413 (1%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N + S+ ++ G ++ + K + + I + + + ++GRGGA + G KWS Sbjct: 9 KNFHRYDPMSIESYLAIGGFNALKKTVTMDGEDIASLLSEAQIKGRGGAAYPMGRKWS-Q 67 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 + ++ NADE EP T KDR+++ ++P LIE I +++I A +IY+R E+ Sbjct: 68 ARAVKGEHKVIICNADEGEPCTFKDRELITNDPFNLIEAMTIGAWSIRAQDGYIYLREEY 127 Query: 130 IRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 R L+ A++E G LG N K G+D I + GAGAY+CGE TAL+ S+EGK G Sbjct: 128 AHLRSRLKNAIEEAERCGFLGKNILGKEGFDFHIHLRSGAGAYVCGEGTALIRSIEGKAG 187 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PR+KPPF GL+ PT VNNVES+++VP +L Y +G + GTKL S+ G+ Sbjct: 188 RPRMKPPFIKQSGLFALPTCVNNVESLSIVPHLLLDDKKEYISYGSGESLGTKLVSVGGN 247 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 VN P E T E+I GGI G + + GG+S + + YD Sbjct: 248 VNCPAVFEIPFGTTVREIIYDLAGGI-QGGRRIRLIQFGGAS-GKIADESILDVPYTYDD 305 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 LK G +G+ A++V+D T ++ + F+ HESCGQCTPCREG + ++E+ + Sbjct: 306 LKAAGVTVGSGAILVVDERTSVLDFLRMTQAFFSHESCGQCTPCREGVLHIKLILEKFAQ 365 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 G A +++++ + +++ + +C LG++A + K F RI H Sbjct: 366 GTATEKDLENMKMIARIMPMSALCGLGESAENALSAAFKLFPETF--RIGGVH 416 >gi|29375956|ref|NP_815110.1| NAD-dependent formate dehydrogenase, beta subunit, putative [Enterococcus faecalis V583] gi|256762396|ref|ZP_05502976.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T3] gi|29343418|gb|AAO81180.1| NAD-dependent formate dehydrogenase, beta subunit, putative [Enterococcus faecalis V583] gi|256683647|gb|EEU23342.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis T3] Length = 417 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 139/394 (35%), Positives = 219/394 (55%), Gaps = 4/394 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +++ +D + + + + I+NE+ + LRGRGGA + G KW + Sbjct: 6 DVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYHAK-GTTK 64 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q Sbjct: 65 YIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQE 124 Query: 139 AVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+D +G LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP Sbjct: 125 ALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHL 184 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+VGLY PT VNNVES A VP ILR G + G + GTKL +SGH+ E Sbjct: 185 ADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEV 244 Query: 257 SMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 ++ +E+I + GG L + GG S P +R + Y+ L + Sbjct: 245 NLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSV 304 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A ++ Sbjct: 305 GSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDL 364 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++ ++ + C LG + A P++ + F Sbjct: 365 PRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 398 >gi|300860588|ref|ZP_07106675.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus faecalis TUSoD Ef11] gi|300849627|gb|EFK77377.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus faecalis TUSoD Ef11] Length = 432 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTP R GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPFRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A P++ + F Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413 >gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 530 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 134/387 (34%), Positives = 223/387 (57%), Gaps = 7/387 (1%) Query: 1 MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58 + Q ++ + + ++ + + ++ G + + D I + II+E+ SGLRGRGG Sbjct: 140 FFSRQRKVVLDRFEEMEPERIESYLAAGGYQALLDCIWHRQPAAIIDEISKSGLRGRGGG 199 Query: 59 GFSTGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 G+ G+KW+ + K Y++ NADE +PG DR ++ PH ++EG IA++A+ Sbjct: 200 GYPAGLKWATVAKAALPPGGRKYVICNADEGDPGAFMDRSVLESAPHRVLEGMAIAAYAV 259 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEE 175 GA ++YVR E+ L+ A+ + GLLG +D + + GAGA++CGEE Sbjct: 260 GADFGYLYVRAEYPLAVARLKKAISQAEKLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEE 319 Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 TAL+ S+EGK+GQPR +PP+PA G+ GCPT +NNVE++A + I+ RG +W++ G E Sbjct: 320 TALVASIEGKRGQPRPRPPYPAEYGIKGCPTLINNVETLANITAIINRGGAWFATLGSEQ 379 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 ++GTK+F+++G V +E M IT E++E+ GG G ++ AV GG S C+PA Sbjct: 380 SKGTKVFALAGKVVNTGLIEVPMGITLHEIVEEMGGGTPAGG-SIKAVQTGGPSGGCIPA 438 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +DY+ L+ GS +G+ +I+MD + ++ F ESCG+C PCR GT Sbjct: 439 AH-FQLPVDYESLQAEGSIMGSGGLIIMDEGSGMVDVARFFMEFCVDESCGKCVPCRVGT 497 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVS 382 ++ ++E++ G + ++ L + Sbjct: 498 KQILLLLEKIGAGAGGQDDMARLQNFA 524 >gi|126666308|ref|ZP_01737287.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17] gi|126629109|gb|EAZ99727.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17] Length = 450 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 150/403 (37%), Positives = 224/403 (55%), Gaps = 8/403 (1%) Query: 21 SDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + ++ + + + L + II+ +K + +RGRGG GFS G+KW Y Sbjct: 44 EEYCAKEGYQSARQTLTQRTPADIIDTMKQANVRGRGGGGFSAGVKWGLTQVGDHLPRGY 103 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L+ NADE EPGT KDR ++ PH LIE +IA +A + +I++RGE++ S+ A Sbjct: 104 LICNADEMEPGTFKDRLLLEQLPHLLIESMIIAGYANRSCYGYIFLRGEYVEAARSVALA 163 Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++E +GLLGS+ G+D DI +H GAG YICGEETAL+ SLEGK+ PR KPPFP Sbjct: 164 IEEARQAGLLGSDIAGSGFDFDIALHTGAGRYICGEETALINSLEGKRANPRAKPPFPGQ 223 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEE 256 G +G PT VNNVE++ VP++++ GA WY G G + GTKL+ +SG V P E Sbjct: 224 SGAWGKPTVVNNVETLCNVPSVMQHGADWYQGLSGGLSEDGGTKLYGVSGLVERPGLWEL 283 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + + E++E+ G L A +PGG S L + MD+ + + GS LG Sbjct: 284 PIGTSGREILERAGGM--RQGHTLKAWLPGGGSTGFLLPEHL-DLPMDFGTIGQYGSRLG 340 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T + V+ I+ + L F+ ESCG CTPCR+G W +++++ L +G + I+ Sbjct: 341 TGLIAVVSERQSIVSLLRNLEQFFARESCGWCTPCRDGLPWTVKILQALERGEGKPEYIE 400 Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +L + + + RT CA A P++ I++FR E I Sbjct: 401 ILEQHTLGLNPARTFCAHAPGAMMPLESAIRHFRADFEAGIAH 443 >gi|315170079|gb|EFU14096.1| HymB family protein [Enterococcus faecalis TX1342] Length = 432 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ ++ + + A ++ L ++ ++ + C LG + A ++ + F Sbjct: 360 TRILELLSKFNRKEATASDLPRLEKMLTHVTRLSACGLGQSVATSMKSALTLFP 413 >gi|146277732|ref|YP_001167891.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] gi|145555973|gb|ABP70586.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025] Length = 416 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 154/412 (37%), Positives = 221/412 (53%), Gaps = 15/412 (3%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71 + +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ Sbjct: 14 RRPHTLAEWRAEGGYEAVERARTMTPSEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 D P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ Sbjct: 74 SPGDGPSYLIVNGDEMEPGAFKDRFLLEAMPHQVIEGAIITARATHADEAIVLIRDEYRP 133 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 +++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR Sbjct: 134 GIAAVEHAIHEARTAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRK 186 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M T ELIE+ G G L A PGG + Q+ +D+ + Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDQL-DLPLDFGHVARA 303 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS GT +IV+D S + + R FY ESCG CTPCREG + ++++R +G + Sbjct: 304 GSMFGTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAEGRGR 363 Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + +++LL + GR+ C L A P+ ++ F E R+ + R Sbjct: 364 RADLELLQMTAAEAGPRGRSFCDLMGGAMAPLASGLRMFAAEFEARLAEGER 415 >gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] Length = 609 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 137/390 (35%), Positives = 209/390 (53%), Gaps = 15/390 (3%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + ++G + E+ SGLRGRGGAGF T +KW F + Y+V NADE EP Sbjct: 183 AALRSAFKRGIKETLKEIDYSGLRGRGGAGFKTAIKWQFCSEEQQ-TERYVVCNADEGEP 241 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ + EG + + IGA F+Y+RGE++ + LQ+ +++ + LL Sbjct: 242 GTFKDRVLLNAYADQVFEGMTVCAAIIGAKQGFLYLRGEYLHLYDKLQSILEQRRQNSLL 301 Query: 150 GSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 G+N G D DI + GAGAYICGEE+AL+ESLEGK G PR +PP+P G G PT V Sbjct: 302 GNNILDTGLDFDIEICLGAGAYICGEESALIESLEGKAGIPRNRPPYPVTQGYLGKPTVV 361 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 NNVE+ I G+ W++ G E ++GTK+ SISG P E T ++ Sbjct: 362 NNVETFLAAAGIAVNGSDWFANIGTEKSKGTKILSISGDCARPGIYEYPFGTTIQTILND 421 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 D++L V GG S + + Q + ++ L GS I+ + S + Sbjct: 422 CGA------DDVLGVQVGGPSGTFI-SNQEFDRKLAFEDLATGGS------FIIFNSSRN 468 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 I+ + + F+ HESCG CTPCR GT + + ++++V+G ++ L E+ + ++ Sbjct: 469 ILDMVHNFAHFFAHESCGFCTPCRVGTSLLQKQIDKIVEGHGSAGDVVALEELCQLVKNY 528 Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + C LG AA PI ++ + L + R+ + Sbjct: 529 SHCGLGQTAANPILTTLERYPDLYQSRLKE 558 >gi|145589293|ref|YP_001155890.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047699|gb|ABP34326.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 600 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 149/394 (37%), Positives = 219/394 (55%), Gaps = 19/394 (4%) Query: 21 SDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 ++G + +I E RD II +++SGLRG GGAGF G KW + + P Sbjct: 223 EAYRAKGGYALAKEIAEGKRDAESIIKAMESSGLRGLGGAGFPAGRKWRIVKDQVA--PK 280 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KDR + +PH +EG +IA+ +G +IY+R E+ RE LQ Sbjct: 281 LMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLIAASVVGIDACYIYLRDEYHGCRELLQL 340 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 +D+ A+ I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A Sbjct: 341 EIDKLKANPPFKLPL-------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQ 393 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +N E++ V I++RG W+S FGR + +G + FS+SG V P Sbjct: 394 VGLFGRPTLEHNFETLYWVRDIVQRGPEWFSSFGRHDRKGLRSFSVSGRVKKPGVKLAPA 453 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT ELI+++CGG+ +PGG+S LPA M +D+D L+ G +G+A Sbjct: 454 GITIQELIDEYCGGM-QEGHQFYGYLPGGASGGILPA-TMNDIPLDFDTLQPYGCFIGSA 511 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+V + F++HESCGQCTPCR GTG ++M A+ + L Sbjct: 512 AVMVFSNQDKARDMALNVMHFFEHESCGQCTPCRVGTGKAAKLM------QAKSWDQTTL 565 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++ + +IC LG AA PI+ + K F + Sbjct: 566 EDLATVMVDASICGLGQAAPNPIRCIHKYFPNEV 599 >gi|257089783|ref|ZP_05584144.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis CH188] gi|256998595|gb|EEU85115.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus faecalis CH188] Length = 417 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 138/394 (35%), Positives = 218/394 (55%), Gaps = 4/394 (1%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +++ +D + + + + I+NE+ + LRGRGGA + G KW + Sbjct: 6 DVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYHAK-GTTK 64 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A +IY+RGE+ R +++ Q Sbjct: 65 YIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQE 124 Query: 139 AVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+D +G LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KPP Sbjct: 125 ALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHL 184 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+VGLY PT VNNVES A VP ILR G + G + GTKL +SGH+ E Sbjct: 185 ADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKSRGLYEV 244 Query: 257 SMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 ++ +E+I + GG L + GG S P +R + Y+ L + Sbjct: 245 NLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSV 304 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+ A++VMD S +++ + ++ F+ HESCG+C PCR GT ++ ++ + + A ++ Sbjct: 305 GSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCIPCRLGTTRILELLSKFNRNEATASDL 364 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 L ++ ++ + C LG + A P++ + F Sbjct: 365 PRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 398 >gi|124514246|gb|EAY55760.1| NADH dehydrogenase (Quinone) [Leptospirillum rubarum] Length = 453 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 148/416 (35%), Positives = 223/416 (53%), Gaps = 11/416 (2%) Query: 17 GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G LS + G ++ + ++L I E+K +GLRGRGG+GF T +KW + Sbjct: 29 GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWEKVAH-HRI 87 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 R Y+V N E EPG+ KD ++ PH ++EG +IASFA+ A A ++V+ F R ++ Sbjct: 88 REKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVRARKAILFVKDSFPRGIDA 147 Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKP 193 L+ A DE G LG +D+ + G AYI GEETALLE+LEG+ P Sbjct: 148 LKKARDEAREEGFLGDRILGSELSLDLEIFVGPSAYIAGEETALLEALEGRLPKPRPKPP 207 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 +P + GLY CPT VNNVE+ A V I R GA W+ G + GT +FS++G V P Sbjct: 208 GYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVKRPIV 267 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 VE + + L+E++ GG + + + PGG S LPA + +DYD L+ +GS Sbjct: 268 VELPLGTSLRTLVEEYAGGAP-DGERIESFYPGGPSFGVLPAKDL-DTPLDYDALRALGS 325 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G+G+ VIV+ + + + FY+ SCGQC PCR GT + ++E G A + Sbjct: 326 GIGSGGVIVLSDKDCPVATARQFAAFYETGSCGQCPPCRIGTENLHEILELFENGKASRE 385 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424 + + +S I+GR C L A+A+ ++ L+++F + +D + HR F Sbjct: 386 NVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDGGCRRQHRTPF 441 >gi|296274180|ref|YP_003656811.1| NADH dehydrogenase [Arcobacter nitrofigilis DSM 7299] gi|296098354|gb|ADG94304.1| NADH dehydrogenase (quinone) [Arcobacter nitrofigilis DSM 7299] Length = 423 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 171/412 (41%), Positives = 248/412 (60%), Gaps = 4/412 (0%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69 N L ++ G + +++K+ + + EV SGLRG+GG G + G KW M Sbjct: 13 KNFDIPDSHKLDVALKNGRYTSIEKLFTMAPEDVTEEVCKSGLRGKGGGGAACGPKWKLM 72 Query: 70 PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 P +RP YL+VN DESEPGT KDR I +++PH LIEG + + +AIGAH A+IY+RGE+ Sbjct: 73 P-PVDERPRYLIVNGDESEPGTFKDRQIFQYDPHLLIEGIICSCYAIGAHDAYIYIRGEY 131 Query: 130 IRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 + L A+DE YA+G++G K + VDI VH G GAYICGE++AL+ESLEGK+G Sbjct: 132 KWFIDRLNEAIDEAYAAGIIGDKIMGKHDFRVDITVHRGGGAYICGEKSALIESLEGKRG 191 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 PRLKP Y P TVNNVE+IA VP I+ G Y+ +G E GT LF++SG Sbjct: 192 HPRLKPHGKECEWFYDMPATVNNVETIASVPNIVENGYESYTKYGTEKAPGTMLFAMSGP 251 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E ++I + GG++ G L AVIPGG+S P L A + A +DY+ Sbjct: 252 VKNPGVYELQYGCKMADVINEIGGGMQDGLK-LKAVIPGGASCPILTAADVEKAYLDYES 310 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + ++GS LGT ++++ ++ L FY HESCGQCTPCREGTGW+ +++ L++ Sbjct: 311 MWDIGSTLGTGGMMIIPEGVSMVDVAKNLIEFYHHESCGQCTPCREGTGWIDKILRELIE 370 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 G+A++ +I+ L +V + G+TIC A I+ +++ ++ E I+ Sbjct: 371 GVAKEDDIETLLDVCDTMNGKTICVFAPAVKDIIKSIVEKYKHEFLELIENK 422 >gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 580 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 217/396 (54%), Gaps = 19/396 (4%) Query: 22 DSMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + + ++++G +I ++ SGLRG GGAGF TG KW + + P Sbjct: 192 AYKANGGYGLLKALVQEGSLDPAAVICTMEDSGLRGLGGAGFPTGRKWRIVSGEPA--PR 249 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KDR + +PH +EG +IA+ +IY+R E+ R L Sbjct: 250 LMAVNIDEGEPGTFKDRVYLERDPHRFLEGMLIAAAVTQVAAIYIYLRDEYAGCRAILTQ 309 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ E L + + I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A Sbjct: 310 ALQE------LHDDPPVPDLPRIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQ 363 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +N E++ V IL +GA W++ GR +G + FS+SG V P Sbjct: 364 VGLFGRPTLEHNFETLYWVRDILEKGAEWFASQGRHGRKGLRSFSVSGRVRQPGVHLAPA 423 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT ELI+++CGG+ A +PGG+S LPA M +D+D L+ G +G+A Sbjct: 424 GITVRELIDEYCGGMI-DGHTFYAYLPGGASGGILPAS-MGNIPLDFDTLQPHGCFIGSA 481 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 A+IV+ + A L F+KHESCGQCTPCR GT + ++ + ++ L Sbjct: 482 AIIVLSDHDSAVAAARNLMHFFKHESCGQCTPCRVGTAKALDLI------RQPQWDLPAL 535 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++S + +IC LG AA P+ +I+ F ++ Sbjct: 536 EDLSAVMRDASICGLGQAAPNPVDCVIRYFPHELQA 571 >gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42] gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Acidovorax sp. JS42] Length = 640 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 147/397 (37%), Positives = 219/397 (55%), Gaps = 21/397 (5%) Query: 19 SLSDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + G + L E + ++ ++ SGLRG GGAGF G KW + + Sbjct: 231 DLVTYRAHGGYQ-TAAALVNGEMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVRDQPA- 288 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P + VN DE EPGT KDR + +PH +EG +IA+ +G +IY+R E+ R Sbjct: 289 -PRLMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRAL 347 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 LQ+A++E A I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ Sbjct: 348 LQSALEELRAESPCPL-------PHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPY 400 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VGL+G PT +N E++ V I+ +G W++ FGR RG + FS+SG V P Sbjct: 401 IAQVGLFGRPTLEHNFETLYWVRDIVEKGPQWFASFGRHGRRGLRSFSVSGRVKEPGVKL 460 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 IT EL++++CGG+ L A +PGG+S LPA ++ +D+D L+ G + Sbjct: 461 APAGITLRELVDEYCGGMA-DGHVLYAYLPGGASGGILPA-RLSDVPLDFDTLQPHGCFI 518 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAVIV+ + A + F+ HESCGQCTPCR GT ++M A + Sbjct: 519 GSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTPCRVGTAKAAQLM------QAPLWDE 572 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 D L ++++ + +IC LG AA PI+ + K F + Sbjct: 573 DTLDDLAQVMADASICGLGQAAPNPIRCIHKYFAHEV 609 >gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] Length = 581 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 150/395 (37%), Positives = 226/395 (57%), Gaps = 19/395 (4%) Query: 19 SLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 SL ++ G + + L+ R+ ++N V+ +GLRG GGAGF +G+KW + K + Sbjct: 204 SLDETRIHGGYLTLQHCLDGRLDREEVVNRVETAGLRGMGGAGFKSGLKWRLVRKQPA-- 261 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + +NADE EPGT KDR + +PH +EG +IA++A+ A +IY+R E+ R+ L Sbjct: 262 PRLMAINADEGEPGTFKDRHHLELDPHRFLEGMLIAAWAVEAEACYIYLRDEYPHLRKVL 321 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 ++ +GL I++ GAGAYICGEE+A+LESLEGK+G PR KPP+P Sbjct: 322 LREIERVARAGLSP-------HCRIVLRRGAGAYICGEESAMLESLEGKRGYPRHKPPYP 374 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 VGL+G PT ++NVE++ + IL RG W++ GR G + FS+SG V P Sbjct: 375 VEVGLFGRPTLIHNVETVYWLRDILERGPDWFARHGRRGRTGLRSFSVSGRVAEPGVKLA 434 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT ELI+++CGG+ L A +PGG+S LPA ++ +D+ L G +G Sbjct: 435 PAGITARELIDEYCGGMA-PGHTLKAYLPGGASGGLLPA-RLADEPLDFGTLDPYGCFIG 492 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V + + L F++HESCGQCTPCR GT ++++ + + Sbjct: 493 SAAVVVFSEQDSLRAVVRNLLKFFEHESCGQCTPCRVGTEKLVQLTD------PPGWDRP 546 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411 LL E+S+ + +IC LG AA P+ L++ F Sbjct: 547 LLLELSETMRQASICGLGQAAPNPLLSLLRFFPDE 581 >gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] Length = 562 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 139/397 (35%), Positives = 207/397 (52%), Gaps = 20/397 (5%) Query: 18 KSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 ++ + G + + + D + ++V SGLRG GGAGF +G KWSF+ Sbjct: 184 ETFDAYHAAGGYAELAALRGGSMTPDQVQDKVLESGLRGLGGAGFPSGKKWSFVRMEQG- 242 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ Sbjct: 243 -TRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKCFIYMRDEYPAVLHI 301 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L + A+G++ + I + GAGAYICGEE+A++ES+EGKKG PR +PPF Sbjct: 302 LAQEIAALEAAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPF 354 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VG++ PT V+NVE++ V I R G + + G + +SISG V P Sbjct: 355 VAQVGIFNRPTLVHNVETLYWVTKICREGPECLNTTVKNGRTGLRSYSISGRVKNPGVHL 414 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 T +LIE G + A PGG S LPA M MD+D L+ +G+ + Sbjct: 415 LPAGSTIMDLIEASGGML--DGHEFKAYQPGGPSAGLLPA-HMNDIPMDFDTLQAVGTFI 471 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AA++++ A + F++ ESCGQCTPCR G +++M + Sbjct: 472 GSAAIVILSDQDRARDAALNMLKFFEDESCGQCTPCRVGCEKAVKLM------QEDTWDA 525 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 DLL ++ + +IC LG AA PI+ +++F+ + Sbjct: 526 DLLTDLCDVMVDASICGLGQAAPNPIKLTLQHFKDEV 562 >gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] Length = 560 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 143/398 (35%), Positives = 211/398 (53%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ + + G + + + E G + + ++V ASGLRG GGAGF +G KW F+ Sbjct: 181 DYETFAKYQAEGGYTALQDLRENGDWEAVQDKVLASGLRGLGGAGFPSGKKWGFVRANPG 240 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A +IY+R E+ Sbjct: 241 --PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLH 298 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L + +G++ I + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 299 ILAEEIKALEDAGIVAPGF-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 351 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 + A VGL+G PT V+N+E++ V I R G S + G + +S+SG V P Sbjct: 352 YVAQVGLFGQPTLVHNIETLHWVARICREGPETLSSTEKNGRVGLRSYSVSGRVAKPGVY 411 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++IE G A PGG S LPA + +D+D L+ +G+ Sbjct: 412 LLPAGSTITDIIEAAGGM--AEGHVFKAYQPGGPSSGLLPAS-INDVPLDFDTLQPLGTF 468 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A K + Sbjct: 469 IGSAAVVVLSDQDKARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADKWD 522 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 DLL E+S + +IC LG AA PI+ +K+F I Sbjct: 523 TDLLDELSTAMVDASICGLGQAAPNPIRLTMKHFPEEI 560 >gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus str. Bath] gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus str. Bath] Length = 610 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 136/402 (33%), Positives = 209/402 (51%), Gaps = 27/402 (6%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP------------KVCSDRP 77 + +++ L R+ + E++ S LRGRGGAGF+T KW F + + Sbjct: 189 EALERTLALDRETMFGEIETSQLRGRGGAGFNTAWKWRFCYEGPETAAVCPPGQPAAGIE 248 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+V NADE EPGT KDR +++ + EG + ++ +GA F+Y+RGE++ + L+ Sbjct: 249 RYVVCNADEGEPGTFKDRVLLQSCADQVFEGMTVCAYLVGAKQGFLYLRGEYLYLHDQLE 308 Query: 138 AAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A + GLLG + + G+D DI + GAGAYICGEE+AL+ESLEG +G PR +PP+ Sbjct: 309 AVLAARRRHGLLGKSILGREGFDFDIEIRLGAGAYICGEESALIESLEGNRGVPRNRPPY 368 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P G G PT VNNVE+ I G W++ G E ++GTKL SI G P E Sbjct: 369 PVTHGYLGKPTVVNNVETFFAAAAIAVHGGEWFAEVGTEKSKGTKLLSICGDCARPGIYE 428 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 +T +++E ++L V GG S L + + Y+ L GS Sbjct: 429 YPFGVTIRQVLEDCGAA------DVLGVQIGGPSGTFLSDKEC-DRKLAYEDLATGGS-- 479 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 IV DR+ D+I + F+ HESCG CTPCR GT + +++++ +G ++ Sbjct: 480 ----FIVFDRTRDVIGIARNFTHFFAHESCGFCTPCRVGTALLKNLLDKIAEGHGATGDL 535 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 L + + + + C LG AA PI ++ + + + R+ Sbjct: 536 AELSRLGRFVRSASHCGLGQTAANPILSTLERYPEIYQARLK 577 >gi|221639519|ref|YP_002525781.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] gi|221160300|gb|ACM01280.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131] Length = 416 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 220/412 (53%), Gaps = 15/412 (3%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71 + +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ Sbjct: 14 RRPHTLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 D P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ Sbjct: 74 SPGDGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 +++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR Sbjct: 134 GIAAVERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRK 186 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M T ELIE+ G G L A PGG + Q+ +D+ + + Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--RLRAFQPGGGASGFFGPDQL-DLPLDFGHVAKA 303 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS GT +IV+D + + + R FY ESCG CTPCREG + ++++R G + Sbjct: 304 GSMFGTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363 Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + +++LL + GR+ C L A P+ + F E R+ + R Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415 >gi|157736572|ref|YP_001489255.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018] gi|157698426|gb|ABV66586.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018] Length = 416 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 168/420 (40%), Positives = 246/420 (58%), Gaps = 6/420 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLT + N L +++ G + ++DK+ + + EV SGLRG+GG G Sbjct: 1 MLTK--IVSKNFDIPNSHKLEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGA 58 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + G KW MP +RP YL+VN DESEPGT KDR I +++PH LIEG + +AI A+ Sbjct: 59 ACGPKWELMP-PVDERPRYLIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANH 117 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178 A+IY+RGE+ + L A+ E Y + ++G YD DI VH G GAYICGE++AL Sbjct: 118 AYIYIRGEYKFFIDRLNEAIKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSAL 177 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGK+G PRLKP + P TVNNVE+I+ VP I+ GA Y+ +G E + G Sbjct: 178 IESLEGKRGHPRLKPHGKECEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPG 237 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T LF+ISG V P E + + + GG+ L A+IPGGSS P L A ++ Sbjct: 238 TMLFAISGPVKNPGVYEMAYGNKMIDFLNVLGGGM-LEGKKLKAIIPGGSSCPILTASEV 296 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A++DY+ + E+GS LGT +IV+D T +++ + FY HESCGQCTPCREGTGW+ Sbjct: 297 EKAVLDYESMWEIGSTLGTGGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWI 356 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++++++ G A +++ + +V + G+T+C A I ++K F + + Sbjct: 357 DKILKKVIAGEASDKDLKTIMDVCDTLNGKTVCVFAPAVKDIIASIVKKFPEEFKAYLKN 416 >gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] Length = 564 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 144/396 (36%), Positives = 218/396 (55%), Gaps = 19/396 (4%) Query: 19 SLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 S ++ +G + + + + II+ ++ SGLRG GGAGF G KW + + + Sbjct: 185 SYAEYCEQGGYQLWRDCVAGRRDPESIISMLEESGLRGLGGAGFPAGRKWRIVRQQPA-- 242 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + VN DE EPGT KDR + +PH +EG +IA++A+G F+Y+R E+ R+ L Sbjct: 243 PRLMAVNIDEGEPGTFKDRYYLERDPHRFLEGTLIAAWAVGIDEIFLYLRDEYAGCRQLL 302 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + +A + + GAGAYICGEE+A++ESLEGK+G PRL+PP+ Sbjct: 303 ERELALLHADPPCQL-------PQLHLRRGAGAYICGEESAMIESLEGKRGMPRLRPPYV 355 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +N+E++ V I+ +G W+S GR +G + FS+SG V P Sbjct: 356 AQVGLFGRPTLEHNLETLYWVREIVEKGPDWFSSQGRHGRQGLRSFSVSGRVKKPGVHLA 415 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT ELIE++CGG+ L PGG+S LPA M +D+D L+ G +G Sbjct: 416 PAGITLKELIEEYCGGM-LEGHELYGYFPGGASGGILPAS-MGDIPLDFDTLQPYGCFIG 473 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AA+IV + + F++ ESCGQCTPCR GT ++ME + Sbjct: 474 SAAIIVFSQHDRAREVALNAMRFFEDESCGQCTPCRVGTAKASKLME------VSTWDQP 527 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+++ + +IC LG AA P++ ++K F + Sbjct: 528 LLEELAQAMADASICGLGQAAPNPLRCVMKYFPEEV 563 >gi|315635735|ref|ZP_07890998.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22] gi|315480032|gb|EFU70702.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22] Length = 416 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 167/420 (39%), Positives = 246/420 (58%), Gaps = 6/420 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 MLT + N L +++ G + ++DK+ + + EV SGLRG+GG G Sbjct: 1 MLTK--IVSKNFDIPNSHKLEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGA 58 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + G KW MP +RP YL+VN DESEPGT KDR I +++PH LIEG + +AI A+ Sbjct: 59 ACGPKWELMP-PVDERPRYLIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANH 117 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178 A+IY+RGE+ + L A+ E Y + ++G YD DI VH G GAYICGE++AL Sbjct: 118 AYIYIRGEYKFFIDRLNEAIKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSAL 177 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 +ESLEGK+G PRLKP + P TVNNVE+I+ VP I+ GA Y+ +G E + G Sbjct: 178 IESLEGKRGHPRLKPHGKECEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPG 237 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 T LF+ISG V P E + + + GG+ L A+IPGGSS P L A ++ Sbjct: 238 TMLFAISGPVKNPGVYEMAYGNKMIDFLNVLGGGMI-DGKKLKAIIPGGSSCPILTASEV 296 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 A++DY+ + ++GS LGT +IV+D T +++ + FY HESCGQCTPCREGTGW+ Sbjct: 297 EKAVLDYESMWDIGSTLGTGGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWI 356 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +++++++ G A +++ + +V + G+T+C A I ++K F + + Sbjct: 357 DKILKKVIAGEASDKDLKTIMDVCDTLNGKTVCVFAPAVKDIIASIVKKFPEEFKAYLKN 416 >gi|218671274|ref|ZP_03520944.1| NADH dehydrogenase I subunit F [Rhizobium etli GR56] Length = 290 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 225/280 (80%), Positives = 248/280 (88%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 2 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKHILEKGRDWIINEMKASGLRGRGGAGF 61 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 62 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 121 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 122 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 181 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 182 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 241 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWD Sbjct: 242 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDIC 281 >gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] Length = 570 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 146/400 (36%), Positives = 204/400 (51%), Gaps = 16/400 (4%) Query: 23 SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 S + K D +I E+ ASGL GRGGAGF TG KW D Y++ Sbjct: 180 YASHHANAGITKAAAMEPDEVIAEISASGLCGRGGAGFPTGTKWKMAADANGD-VKYMIC 238 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 NADE EPGT KDR + + EG IA++AI A +Y+R E+ L+ + Sbjct: 239 NADEGEPGTFKDRITLSWFADLVFEGMTIAAYAIRASQGIVYLRAEYAYLLPHLEQVLKA 298 Query: 143 CYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 +GLLG + K G++ DI + GAG+Y+CGEETAL+ESLEG +G+PR +PP+P G Sbjct: 299 RREAGLLGCDISGKEGFNFDIRIQMGAGSYVCGEETALIESLEGNRGEPRNRPPYPTEAG 358 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 G PT VNNVE++A V IL RGA W+SG G E ++G KLFS+SG P E Sbjct: 359 FLGQPTVVNNVETLATVSVILARGAQWFSGIGTEKSKGFKLFSVSGECARPGLYELPWGS 418 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 T L+ G AV GG S LPA + G + Y+ L S V Sbjct: 419 TVSGLLALAGGEGA------KAVQIGGYSGRFLPAAE-FGRKLAYEDLGAGSS------V 465 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 I+ D+++ F+ ESCGQCTPCR+G ++ + L G +++D L Sbjct: 466 IIYGPDRDLLEVAENYLEFFVEESCGQCTPCRDGNVVLLNGIRSLRNGKCSGQQLDELLS 525 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +++ I + C LG ++ + + + FR I + H Sbjct: 526 LAETICVASKCGLGQSSPKVLLSINRYFRNEINAHLTAEH 565 >gi|126462508|ref|YP_001043622.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] gi|126104172|gb|ABN76850.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029] Length = 416 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 152/412 (36%), Positives = 220/412 (53%), Gaps = 15/412 (3%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71 + +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ Sbjct: 14 RRPHTLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 + P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ Sbjct: 74 SPGEGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 +++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR Sbjct: 134 GIAAVERAIHEARDAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRK 186 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M T ELIE+ G G L A PGG + ++ +D+ + + Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKA 303 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS GT +IV+D S + + R FY ESCG CTPCREG + ++++R G + Sbjct: 304 GSMFGTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363 Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + +++LL + GR+ C L A P+ + F E R+ + R Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415 >gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043] gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chromohalobacter salexigens DSM 3043] Length = 595 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 150/409 (36%), Positives = 226/409 (55%), Gaps = 24/409 (5%) Query: 13 YGLQGK-----SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65 + L+D + G + + + ++ ++ + LRG GGAGF T K Sbjct: 197 GHYHPEAILWQRLADYRAEGGYALLADCHAGRVTVEALMQALETANLRGLGGAGFPTFKK 256 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W+F+ + P Y +NADE EPGT KDR + PH +EG +++++A+ A +IY+ Sbjct: 257 WTFVRQEAG--PRYCAINADEGEPGTFKDRVYLERSPHRFLEGALVSAWAVEAEALYIYL 314 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 R E+ L+ A+ E GL+ + I++ GAGAYICGEE+A++ESLEGK Sbjct: 315 RDEYPGLHRVLREAIAELEDEGLVVPDY-------IVLRRGAGAYICGEESAMIESLEGK 367 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR +PPF A GL+ PT VNNVE++ +P I +RGA ++ GR G + FS+S Sbjct: 368 PGKPRHRPPFVAQRGLFDRPTLVNNVETVYWIPLIWQRGAEAFARQGRHGRVGLRSFSVS 427 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V +P IT +ELIE++CGG+ L+A +PGG+S LPA + +D+ Sbjct: 428 GRVKHPGVHLAPAGITLEELIEEYCGGMA-EGHRLVAYLPGGASGGILPASK-ANVPLDF 485 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L+ G +G+AAVIV+ D+ L F+ ESCGQCTPCR GT M+ ++E Sbjct: 486 DTLQAYGCFIGSAAVIVLSDQDDLRAVATNLLAFFADESCGQCTPCRVGTEKMLTLLE-- 543 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + + L +S+ + +IC LG AA P+ GL+K+FR + Sbjct: 544 ----GDEWDAATLTRLSQVMMDASICGLGQAAPNPVLGLLKDFRGELAA 588 >gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] Length = 603 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 143/389 (36%), Positives = 211/389 (54%), Gaps = 16/389 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D + L++ + +I E+ S LRGRGGAGF TGMKW K + Y++ NADE EP Sbjct: 198 DGIKAALDQSPEQVIEEISNSKLRGRGGAGFPTGMKWRLTRKAVGE-NRYVICNADEGEP 256 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ P + +G IA +A+GA +Y+RGE+ + LQ + + A GLL Sbjct: 257 GTFKDRLLLTEFPDLVFDGMTIAGYALGARRGVVYLRGEYAYLWDPLQEVLRDRRALGLL 316 Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G++ + G+D DI + GAGAY+CGEE+ALLES+EGK+G PR +PPFP G PT Sbjct: 317 GADICGRSGFDFDIRIQLGAGAYMCGEESALLESMEGKRGAPRDRPPFPTERGYLRQPTA 376 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 ++NVE+ A I+ +GA+W++GFG + + GTKL S+SG P E IT +EL++ Sbjct: 377 IDNVETFACAARIVEKGAAWFTGFGTKESTGTKLMSVSGDCQRPGVYEVPFGITVNELLD 436 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 D I G S P G + Y+ L GS + + + Sbjct: 437 LVGA-----PDAEYVQISGPSGQSVAPKD--FGRRIAYEDLSTGGSTM------IFGPNR 483 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D++ + + + F+ HESCG C PCR G + + ME++V G A +I ++ + Sbjct: 484 DVLDIVLQFADFFVHESCGWCAPCRVGAPLLKQGMEKIVAGRATLADIAATEALANTVMR 543 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 + C LG A PI + +F L E R+ Sbjct: 544 MSRCGLGQTAPNPILTTMLSFPELYEARL 572 >gi|307331426|ref|ZP_07610544.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113] gi|306882925|gb|EFN13993.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113] Length = 366 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 153/368 (41%), Positives = 213/368 (57%), Gaps = 10/368 (2%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I EV +GL GRGGA F TG KW+ + D PHYLV NADESEPGT KDR +M +P Sbjct: 1 MIREVTEAGLVGRGGAAFPTGRKWAATAQQP-DHPHYLVCNADESEPGTFKDRVLMEGDP 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161 + LIE IA +A GAH ++Y+RGE+ R L+ A+D A G LG + G+ +I Sbjct: 60 YALIEAMTIAGYATGAHRGYLYLRGEYPRALRRLRTAIDRARARGFLGEDVMGQGFAFEI 119 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 + GAGAYICGEETA+ S+EG++G+PR KPPFP GL+G PT VNNVE++ V IL Sbjct: 120 EIRRGAGAYICGEETAIFNSIEGRRGEPRSKPPFPVEKGLFGKPTAVNNVETLVNVLPIL 179 Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281 GA Y+ G + GTKLF +SG V P E T EL+E + L Sbjct: 180 IEGAQAYARTGTGTSTGTKLFCVSGTVARPGVYELPFGATLGELLELAG-----PPETLR 234 Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341 AV+ GG++ + ++ + ++G + G+ LG+ V+V+D S D+ + + R++ F++ Sbjct: 235 AVLLGGAAGGFVRPDEL-DVPLTFEGTRAAGTTLGSGVVLVLDDSVDLPRVLLRIAEFFR 293 Query: 342 HESCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCGQC PCR GT + R+ G A +I LL EV + + +IC LG A Sbjct: 294 DESCGQCVPCRVGTVRQEEALHRIKDLTGAAAAGDIALLREVGQAMRDASICGLGQTAWN 353 Query: 400 PIQGLIKN 407 ++ I Sbjct: 354 AVESAIDR 361 >gi|124265531|ref|YP_001019535.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124258306|gb|ABM93300.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 573 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 145/398 (36%), Positives = 225/398 (56%), Gaps = 18/398 (4%) Query: 19 SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L G + + + L E+ + +++ ++ASGLRG GGAGF G KW + + + Sbjct: 192 TLPSYHDAGGYRTLRQCLSGERPLETVLSTMEASGLRGLGGAGFPAGRKWRIVREQAA-- 249 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + VN DE EPGT KDR + +PH +EG +IA++A+G +IY+R E+ R L Sbjct: 250 PRLMAVNIDEGEPGTFKDRHYLERDPHRFLEGLLIAAWAVGVDAVYIYLRDEYHGCRTLL 309 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + A + + I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ Sbjct: 310 ERELAALRA------DPPMRDMPAIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 363 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +N E++ V IL +G W++G GR +G + FS+SG V P Sbjct: 364 AQVGLFGRPTLEHNFETLYWVRDILEKGGDWFAGHGRHERKGLRSFSVSGRVKKPGVHLA 423 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT EL++++CGG+ L A +PGG+S LP ++ +D+D L+ G +G Sbjct: 424 PAGITLRELVDEYCGGM-LDGHQLHAYLPGGASGGILP-ERLADVPLDFDTLQPHGCFIG 481 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ + L F++HESCGQCTPCR GT + ++ + + ++ Sbjct: 482 SAAVVVLSDQDRVTDVARNLMRFFEHESCGQCTPCRSGTAKVNELIA------SDRWDLP 535 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 LL E+S+ + +IC LG AA P+ +IK F + Sbjct: 536 LLAELSQVMRDASICGLGQAAPNPVDCVIKYFPEELTA 573 >gi|332558532|ref|ZP_08412854.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N] gi|332276244|gb|EGJ21559.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N] Length = 416 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 153/412 (37%), Positives = 220/412 (53%), Gaps = 15/412 (3%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71 + +L++ + G ++ V++ II+ V+A+ L GRGGAGF G KW FMP+ Sbjct: 14 RRPHTLAEWRAEGGYEAVERARNMAPGEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 D P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ Sbjct: 74 SPGDGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 +++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR Sbjct: 134 GIAAVEHAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRK 186 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M T ELIE+ G G L A PGG + ++ +D+ + + Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKA 303 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS GT +IV+D S + + R FY ESCG CTPCREG + ++++R G + Sbjct: 304 GSMFGTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363 Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + +++LL + GR+ C L A P+ + F E R+ + R Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415 >gi|77463676|ref|YP_353180.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|77388094|gb|ABA79279.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter sphaeroides 2.4.1] Length = 416 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 152/412 (36%), Positives = 220/412 (53%), Gaps = 15/412 (3%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71 + +L++ + G ++ VD+ II+ V+A+ L GRGGAGF G KW FMP+ Sbjct: 14 RRPHTLAEWRAEGGYEAVDRARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 + P YL+VN DE EPG KDR ++ PH +IEG +I + A A A + +R E+ Sbjct: 74 SPGEGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 +++ A+ E +GLLG D+ I VH AG YI GEETAL+ +LEG + PR Sbjct: 134 GIAAVERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRK 186 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PPFPA GL+G PTTVNNVE+I++VP IL G + R GTKL+ +SG V P Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E M T ELIE+ G G L A PGG + ++ +D+ + + Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKA 303 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 GS GT +IV+D + + + R FY ESCG CTPCREG + ++++R G + Sbjct: 304 GSMFGTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363 Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 + +++LL + GR+ C L A P+ + F E R+ + R Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415 >gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] Length = 565 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 140/398 (35%), Positives = 208/398 (52%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++L+ + G + + + G + + +VK SGLRG GGAGF +G KW F+ Sbjct: 186 DYETLAAYRAEGGYGVLRDLRASGDWEVVQAQVKQSGLRGLGGAGFPSGTKWGFVRANPG 245 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A +IY+R E+ E Sbjct: 246 --PRYLAVNGDEGEPGTFKDRHYLERVPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLE 303 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + +G+ I + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 304 ILRREIAALEEAGIAEPG-------HIELRRGAGAYICGEESAMIESIEGKRGMPRHRPP 356 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 + A VGL+G PT V+NVE++ + I R G S + G + +S+SG V P Sbjct: 357 YVAQVGLFGRPTLVHNVETLHWIARICREGPEVLSATTHNDRVGLRSYSVSGRVARPGVY 416 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++I+ G A PGG S LPA +D+D L+ +G+ Sbjct: 417 LLPAGSTILDIIDAAGGM--AEGHVFKAFQPGGPSSGLLPASA-ADVPLDFDTLQPLGTF 473 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A++ + Sbjct: 474 IGSAAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAERWD 527 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+ + +IC LG AA PI IK+F + Sbjct: 528 AGLLSELCTAMADASICGLGQAAPNPILSTIKHFPEEV 565 >gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] Length = 568 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 148/396 (37%), Positives = 216/396 (54%), Gaps = 19/396 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ SD ++ G ++ + + E G + + +V ASGLRG GGAGF +G KW F+ Sbjct: 191 ETFSDYVAEGGYETLKTLRETGDWEKVQEDVLASGLRGLGGAGFPSGKKWGFVRANPG-- 248 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E L Sbjct: 249 PRYLAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETAFIYMRDEYPAVLEIL 308 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + +G++ I + GAGAYICGEE+A++ES+EGK+G PR +PPF Sbjct: 309 AREIKALEEAGIVTPGY-------IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPPFV 361 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG++G PT V+NVE++ V I R G S + +G + +S+SG V P Sbjct: 362 AQVGVFGQPTLVHNVETLHWVTRICREGPEVLSATEKNGRKGLRSYSVSGRVAQPGVYLL 421 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++IE G A PGG S LPA + +D+D L+ +GS +G Sbjct: 422 PAGSTITDIIEAAGGM--ADGHLFKAYQPGGPSSGILPAS-ISDVPLDFDTLQPLGSFIG 478 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ A + F++ ESCGQCTPCR G +++M A + + Sbjct: 479 SAAVVVLSDKDSARAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADQWDTG 532 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S + +IC LG AA PI+ ++K+F I Sbjct: 533 LLEELSTAMVDASICGLGQAAPNPIRMVMKHFPEEI 568 >gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 567 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 145/398 (36%), Positives = 216/398 (54%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ + + G + + ++ E G + + ++ ASGLRG GGAGF +G KW F+ + Sbjct: 188 DYETFATYVENGGYTKLKELREGGDWEAVQEQILASGLRGLGGAGFPSGKKWGFVR--VN 245 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ E Sbjct: 246 DGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLE 305 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + +G++ I + GAGAYICGEE+A++ES+EGKKG PR +PP Sbjct: 306 ILRREIAALEQAGIVEKGY-------IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPP 358 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VG++G PT V+NVE++ V I R G S + +G + +S+SG V Sbjct: 359 FVAQVGVFGRPTLVHNVETLYWVSRICREGPEILSSVEKNGRKGLRCYSVSGRVAKSGVY 418 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++IE G A PGG S LPA M +D+D L+ G+ Sbjct: 419 LLPAGSTILDVIEAAGGMAL--GHAFKAYQPGGPSSGLLPAS-MDDIPLDFDTLQPHGTF 475 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A+K + Sbjct: 476 IGSAAVVVLSEQDTARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QAEKWD 529 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 DLL ++ + + +IC LG AA PI+ ++K+F I Sbjct: 530 TDLLEDLCQVMGDASICGLGQAAPNPIRLVMKHFADEI 567 >gi|254670961|emb|CBA07639.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria meningitidis alpha153] Length = 331 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 159/321 (49%), Positives = 206/321 (64%), Gaps = 3/321 (0%) Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGY 157 PH LIEG +IA +A+GA + Y+ GE + +AA+++ A+G LG N + Sbjct: 1 MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGSDF 60 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 + ++ HHG GAYICGEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + V Sbjct: 61 EFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSSV 120 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 P I+R G ++ G N GTKLF ISGHV P E + F E+++ G G Sbjct: 121 PFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGGM--RGG 178 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L AVIPGGSS P LPA M MDYD + + GS LG+ A+IVMD ++KA+ RLS Sbjct: 179 KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVKALERLS 238 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 FY ESCGQCTPCREGTGW+ R++ R+V+G + ++DLL V K + GRTICAL DAA Sbjct: 239 YFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMEDLDLLDSVGKQMAGRTICALADAA 298 Query: 398 AWPIQGLIKNFRPLIEERIDQ 418 +P++ K+FR I+ Sbjct: 299 VFPVRSFTKHFRDEFVHYIEH 319 >gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 569 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 143/395 (36%), Positives = 213/395 (53%), Gaps = 20/395 (5%) Query: 21 SDSMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 G + + K L G D ++ ++ SGLRG GGAGF TG KW + + P Sbjct: 191 DAYRRDGGY-ALLKALAGGGLEPDAVLATMEDSGLRGLGGAGFPTGRKWRIVRGEAA--P 247 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG +IA+ + +IY+R E+ R L Sbjct: 248 RLMAVNIDEGEPGTFKDRVYLERDPHRFLEGMLIAARVVDVAAIYIYLRDEYAGCRALLA 307 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ + + + I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A Sbjct: 308 EALQQLQQDPPVARLPR------IELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVA 361 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT +N E++ V I+ +GA W++ GR +G + FS+SG V P Sbjct: 362 QVGLFGRPTLEHNFETLYWVRDIIEKGAEWFASQGRNGRKGLRSFSVSGRVRRPGVHLAP 421 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ELI+++CGG+ +PGG+S LPA M +D+D L+ G +G+ Sbjct: 422 AGITVRELIDEYCGGM-LDGHAFYGYLPGGASGGILPAA-MGNIPLDFDTLQPYGCFIGS 479 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AA++++ +A L F+KHESCGQCTPCR GT + ++ K ++ Sbjct: 480 AAIVILSDHDSATQAARNLMHFFKHESCGQCTPCRTGTAKTLDLI------RQPKWDLAA 533 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L ++S + +IC LG AA P+ +IK F + Sbjct: 534 LDDLSAVMRDASICGLGQAAPNPVDCVIKYFPHEL 568 >gi|116749388|ref|YP_846075.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116698452|gb|ABK17640.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 421 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 167/420 (39%), Positives = 241/420 (57%), Gaps = 7/420 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 +F N + +L + + G + + +L ++ + V +GLRGRGGAGF KW Sbjct: 6 LFRNRKPDRIVTLDEYRAGGGYRALGDVLRKRSAGEVCRVVDEAGLRGRGGAGFPASKKW 65 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 +P P YLV N+DE EPGT KDR ++ +PHT+IEG ++A +AIGA AF++VR Sbjct: 66 ESVP-ADGAYPRYLVANSDEMEPGTFKDRVLIHADPHTIIEGMILAGYAIGASKAFLFVR 124 Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 + ++ + +G LG N Y +DI+VH G YICGE +ALL ++ GK Sbjct: 125 PSYESSAAIMERELRIAREAGYLGRNILGTDYSLDIVVHRSGGRYICGEASALLNAVMGK 184 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 + P+ PP+P GL+ PT VNNVE++A VP ILR G W+ G R GTKLF IS Sbjct: 185 RPNPQRPPPYPTVKGLWERPTVVNNVETLANVPHILRNGPEWFRGLSRSKTPGTKLFCIS 244 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V+ P VE M +E+IE+H GG+ G + A +PGG+S L + A MD+ Sbjct: 245 GKVSRPGCVELPMGTRLNEIIEEHAGGMAPGSE-FKACLPGGASTYFLTRDNLH-AGMDF 302 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 DG+ + + LGT AVIV DR T ++ A L F+ ESCG CTPCREG +M ++ER+ Sbjct: 303 DGMAAVKNRLGTGAVIVFDRKTCLVGATLNLMRFFARESCGWCTPCREGLPYMRDLLERI 362 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 +G ++ I +L +S+ + + CAL AA P++ L+ +F + E I Q RC F+ Sbjct: 363 EEGEGREEYIPMLRLMSRQVW-NSYCALAPGAASPVESLLDHFADEVHEHISQ-KRCPFK 420 >gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] Length = 561 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 217/396 (54%), Gaps = 19/396 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++LS + G + + + +G + + ++ ASGLRG GGAGF +G KW F+ Sbjct: 184 ETLSAYLEEGGYSELKALRAEGDWEEVQEKILASGLRGLGGAGFPSGRKWGFVRANPG-- 241 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL VN DE EPGT KDR + EPH +EG +IA++A+ A FIY+R E+ + L Sbjct: 242 PRYLAVNGDEGEPGTFKDRVYIEGEPHVFLEGVLIAAWAVEAERCFIYMRDEYPGIIDIL 301 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + +G++ + I + GAGAYICGEE+A++ES+EGK+G PR +PP+ Sbjct: 302 RKEIRALEEAGIVEKDY-------IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPPYV 354 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG++ PT V+NVE++ V I R G S + +G + +S+SG V P Sbjct: 355 AQVGIFDRPTLVHNVETLYWVSKICREGPQILSSVEKNGRKGLRSYSVSGRVKSPGVHLL 414 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++I+ G + L A PGG S LPA M +D+D L+ GS +G Sbjct: 415 PAGSTIMDIIKAAGGML--DGHRLKAYQPGGPSSGLLPAS-MNDIPLDFDTLQPHGSFIG 471 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ + A + F++ ESCGQCTPCR G +++M +A K + Sbjct: 472 SAAVVVLSDQDSVRDAALNMLQFFEDESCGQCTPCRVGCEKAVKLM------MADKWDQS 525 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+ + + +IC LG AA PI+ IK+F I Sbjct: 526 LLEELCQTMTDASICGLGQAAPNPIRLTIKHFPEEI 561 >gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] Length = 626 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 153/428 (35%), Positives = 217/428 (50%), Gaps = 30/428 (7%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKI-------------LEKGRDWIINEVKASGLRG 54 I N G +L ++ RG + L++ D + E+K S LRG Sbjct: 180 ILLNSNFQAGSALKAALIRGE-AATAQASQGYIAHMIDPAGLDRAADATLQEIKISKLRG 238 Query: 55 RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114 RGGAGFSTGMKW F D HY+V NADE EPGT KDR ++ + EG + ++ Sbjct: 239 RGGAGFSTGMKWEFCRNAKGD-AHYVVCNADEGEPGTFKDRVLLNSYADLVFEGMTLCAY 297 Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYIC 172 IGA F+Y+RGE+ LQA + LLGS + +D DI +H GAGAYIC Sbjct: 298 VIGAKKGFLYLRGEYRYLLAPLQAVLQRRREQNLLGSRILGQAAFDFDIEIHLGAGAYIC 357 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 GEE+AL+ESLEGK+G PR +PP+P G PT V+NVE+ A I G +WY+G G Sbjct: 358 GEESALIESLEGKRGTPRNRPPYPVTAGYLNQPTVVSNVETFASTSLISLHGGAWYAGIG 417 Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 EN+ G+KLFS+SG +YP E +T +++ N AV G S C Sbjct: 418 AENSSGSKLFSVSGDCDYPGIYEYPFGVTVAQVLADCGA------KNTQAVQISGPSGMC 471 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 + A + +D + G A +V D+ D+ + F+ HESCG CTPCR Sbjct: 472 I-AAHEFDRRISFDDIPTAG------AFMVFDQRRDMFEVARNFVHFFAHESCGFCTPCR 524 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 GT + +M++L +G ++ + ++ ++ + C LG A P+ + FRP Sbjct: 525 VGTALLSNLMDKLNEGQGSPYDLAEIEKLDSLLQSTSHCGLGRTACNPVLHTLAKFRPAY 584 Query: 413 EERIDQYH 420 E R+ Sbjct: 585 ECRLSHQE 592 >gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] Length = 570 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 143/394 (36%), Positives = 212/394 (53%), Gaps = 23/394 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +++G + ++ + + ++ I+ + + LRG GGAGF TG KW + P Sbjct: 191 DSYVAQGGYALLNSLRSGQTSKEDILKALDGASLRGLGGAGFPTGRKWRAVMGEPG--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KDR + +PH +EG +I + + A +IY+R E+ RE L Sbjct: 249 LMAVNGDEGEPGTFKDRFYLETDPHRFLEGMLIGAHIVDAGEVYIYLRDEYPASREILAR 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G + + GAGAYICGEE++LLES+EGK+G PR KPP+P Sbjct: 309 EIAKLPPGGP-----------TLHLRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQ 357 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +NNVE++ V I+++G W+ GR G + +S+SG V P Sbjct: 358 VGLFGLPTLINNVETLWWVRDIVQKGGDWWQSHGRNERHGLRSYSVSGRVKNPGVKLAPA 417 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELIE+ C G+ A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 418 GVTIKELIEEFCDGMA-DGHQFRAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+V+ DI A L F++ ESCGQCTPCR GT +ME + DLL Sbjct: 476 AVVVLSDKDDIKGAALNLMKFFEDESCGQCTPCRIGTQKAAALME------SHVWNRDLL 529 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 E+S+ + +IC LG AA+ P+ +I+ F Sbjct: 530 MELSQTMRDASICGLGQAASNPLTSVIRYFPDEF 563 >gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 567 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 141/398 (35%), Positives = 215/398 (54%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ + + G + + ++ + G + + +++ +SGLRG GGAGF +G KW F+ Sbjct: 188 DYETYAAFTANGGYTKLKELRDGGDWEKVQDDILSSGLRGLGGAGFPSGKKWGFVRMNEG 247 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ E Sbjct: 248 --PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAETCFIYMRDEYPAVLE 305 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + +G++ I + GAGAYICGEE+A++ES+EGKKG PR +PP Sbjct: 306 ILRREIAALEEAGIVEKGY-------IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPP 358 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VG++ PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 359 FVAQVGIFNRPTLVHNVETLYWVSKICREGPECLNSTEKNGRKGLRSYSVSGRVAKPGVY 418 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++IE G A PGG S LPA + +D+D L+ +G+ Sbjct: 419 LLPAGSTILDVIEAAGGM--AEGHQFKAYQPGGPSSGLLPAS-IDDVPLDFDTLQPLGTF 475 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A K + Sbjct: 476 IGSAAVVVLSDQDTARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QADKWD 529 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 DLL ++ + + +IC LG AA PI+ +IK+F I Sbjct: 530 QDLLEDLCQVMGDASICGLGQAAPNPIRLVIKHFADEI 567 >gi|73538415|ref|YP_298782.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72121752|gb|AAZ63938.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 414 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 140/398 (35%), Positives = 208/398 (52%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G L ++RG + + K L D I+ E++ + LRG GGAGF T KW + + Sbjct: 16 GADLQAWLARGGGEGLAKALS-NPDAILAEIEQADLRGMGGAGFPTHRKWRPVAAAAA-V 73 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A A+ +YV E Sbjct: 74 DKYIICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAAATRANHVVLYVNPHQPLSLEMT 133 Query: 137 QAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV + L +L G + + V +G YI GEETA++ S+EG PR KPP+ Sbjct: 134 RQAVQQWQTHAQLAELERLLGGPLTLRVVPSSGLYIGGEETAVIASVEGTFPFPRRKPPY 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA+ G++G PT VNN E++A VP ILR GA WY G GTKL+S+SG V P E Sbjct: 194 PADSGVHGAPTIVNNTETLAHVPGILRHGAQWYRALGVAQAAGTKLYSLSGDVLRPGLYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + + LI + GG+ AV GG S L + +D+D +++ S L Sbjct: 254 LPMGTSLETLIFEFGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFDSVRKRRSRL 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IV+ + I++ + F+ SCGQC PC+ GT +MR++ R+ G + ++ Sbjct: 312 GTGAMIVVSEGSSIVRKVAEYVSFFAQGSCGQCPPCKGGTFQLMRLLNRIDTGRGVRADL 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + L + + + G C L D A + + FR E Sbjct: 372 EALENLCRILPGSGRCGLIDGAVTVVDSSLHQFRDEYE 409 >gi|19527833|gb|AAL90031.1| AT08706p [Drosophila melanogaster] Length = 462 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 179/423 (42%), Positives = 245/423 (57%), Gaps = 23/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ + Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 W F+ + S++ P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P+ V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPSLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 457 Query: 419 YHR 421 Y + Sbjct: 458 YAK 460 >gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 565 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 138/387 (35%), Positives = 217/387 (56%), Gaps = 14/387 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + + +++ +D I+ +++ S LRGRGGAGF TG KW + D ++V NADE EPGT Sbjct: 191 LRETIKRDKDSILEDIEKSNLRGRGGAGFPTGFKWRLAKEEKKD-KKFIVCNADEGEPGT 249 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR I+ ++EG IA++ IGA FIY+RGE+ RE+L+ +++ +GLLG+ Sbjct: 250 FKDRYILHKNFQRVLEGMSIAAYVIGASKGFIYLRGEYTYIRETLEKEIEKRRRAGLLGN 309 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 ++ G + DI + GAGAYICGEETAL+ESLEGK+G+PR KPP+P + G PT VNNV Sbjct: 310 ETEKGLNFDIEIRMGAGAYICGEETALIESLEGKRGEPRNKPPYPVDTGFMNYPTLVNNV 369 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E+ V I +G + +G ++++GTK FSISG E +T D+++ G Sbjct: 370 ETFLNVNLICEKGVESFGQYGTDSSKGTKFFSISGDCKNEGIYELPFGVTIDKVVALAEG 429 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 ++ AV GG++ C+ I + ++I+ + + D++ Sbjct: 430 ------KDIKAVQIGGAAGECVQKNDFSKRI-------AFEAASTGGSIILFNENRDMLD 476 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 F+ ESCGQCTPCREGT ++ + L KG ++ L E+ + +E + C Sbjct: 477 IAENFMEFFVEESCGQCTPCREGTYRILEGIRLLKKGKCSVTYLNKLLELCETVELASKC 536 Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418 LG + + +++NF+ I R+ + Sbjct: 537 GLGQLSTVAFRSIVENFKEEILGRLPE 563 >gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 569 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 140/394 (35%), Positives = 210/394 (53%), Gaps = 18/394 (4%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 G + + + + ++ ++ SGLRG GGAGF TG KW + + P Sbjct: 191 DAYRKDGGYALLKSLASGDLDPAAVLCTMEDSGLRGLGGAGFPTGRKWRIVQNEPA--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + +N DE EPGT KDR + +PH +EG +IA+ + +IY+R E+ RE L Sbjct: 249 LMAINIDEGEPGTFKDRVYLERDPHRFLEGMLIAATVVNVSAIYIYLRDEYAGCRELL-- 306 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 L + + I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ A Sbjct: 307 ----AEELQRLQQDPPIPGLPTIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQ 362 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +N E++ V I+ +GA W++ GR +G + FS+SG V P Sbjct: 363 VGLFGRPTLEHNFETLYWVRDIIEKGAEWFASQGRNGRKGLRSFSVSGRVKRPGVHLAPA 422 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT ELI+++CGG+ +PGG+S LPA M +D+D L+ G +G+A Sbjct: 423 GITVRELIDEYCGGM-LDGHAFYGYLPGGASGGILPAS-MGNIPLDFDTLQPYGCFIGSA 480 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+++ +A L F+KHESCGQCTPCR GT + ++ K ++ L Sbjct: 481 AVVILSDQDSATQAARNLMHFFKHESCGQCTPCRTGTAKTLDLI------RQPKWDLPAL 534 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++S + +IC LG AA P+ +IK F + Sbjct: 535 DDLSAVMRDASICGLGQAAPNPVDCVIKYFPHEL 568 >gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] Length = 571 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 140/404 (34%), Positives = 212/404 (52%), Gaps = 19/404 (4%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSF 68 T+ + + + G + + + + G + + VK SGLRG GGAGF +G KW F Sbjct: 176 THAHVQDYEGFDAYAADGGYATLKDLRKNGNWEDVQASVKESGLRGLGGAGFPSGTKWGF 235 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 + P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E Sbjct: 236 VRGNVG--PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETCFIYMRDE 293 Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L + +G++ I + GAGAYICGEE+A++ES+EGK+G Sbjct: 294 YPAVLQILADEIAALEQAGIVQKGF-------IDLRRGAGAYICGEESAMIESIEGKRGM 346 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR +PP+ A VG++ PT V+NVE++ V I R G + +G + +S+SG V Sbjct: 347 PRHRPPYVAQVGVFNRPTLVHNVETLLWVARICREGPECLNSTELNGRKGLRSYSVSGRV 406 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P T ++I CGG+ A PGG S LPA + +D+D L Sbjct: 407 ANPGVYLLPAGSTITDII-DACGGMA-DGHVFKAYQPGGPSSGLLPAS-IHDVPLDFDTL 463 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + +G+ +G+AAV+V+ + A + F++ ESCGQCTPCR G +++M Sbjct: 464 QPLGTFIGSAAVVVLSEADSARGAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 517 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 A + LL E+S + +IC LG AA PI+ ++K+F + Sbjct: 518 QADTWDQGLLEELSTAMVDASICGLGQAAPNPIRMVLKHFADEV 561 >gi|24653817|ref|NP_611027.1| CG8102, isoform B [Drosophila melanogaster] gi|21627150|gb|AAM68529.1| CG8102, isoform B [Drosophila melanogaster] Length = 462 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 179/423 (42%), Positives = 244/423 (57%), Gaps = 23/423 (5%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DR+F NLYG L + RG W ++LE+G +WI+ + Sbjct: 58 LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102 Query: 62 TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 W F+ + S++ P ++VN E EPGTCKDRDI+RHEPH LIEG ++ A+G Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 A +Y+R F E +L A+ E Y GLLG++ G D++V G Y+CGEETA++ Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 L GK G+PR +PPF G + P V N ESIAVVPTILRRG+ W++G GR N GT Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+ +SG VN PCTVEE MSI +LIE+H GG++GGWDNL AV PGG S P L Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +MD+D L + GSG G AVIVM + D + + R F++ +C QC+ CR+G W+ Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + R VKG EID ++ + + ICAL + + L++ F IEER+ + Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 457 Query: 419 YHR 421 Y + Sbjct: 458 YAK 460 >gi|27377427|ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum USDA 110] gi|27350571|dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110] Length = 567 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 146/396 (36%), Positives = 217/396 (54%), Gaps = 23/396 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ +D I+ ++ S LRG GGAGF TG KW + P Sbjct: 190 DAYVQDGGYKLLERLRSGAVSKDDILRLLEDSSLRGLGGAGFPTGRKWRAVLGEPG--PR 247 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KDR + ++PH IEG +I + + A +IY+R E+ RE L+ Sbjct: 248 LMAVNGDEGEPGTFKDRVYLNNDPHRFIEGTLIGAHIVEASDVYIYIRDEYPAAREILER 307 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G + + GAGAYICGEE++LLES+EGK+G PR KPP+P Sbjct: 308 EIAKLPPGGP-----------TLHMRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQ 356 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +NNVE++ V I+ +GA W+ G GR G + FS+SG V P Sbjct: 357 VGLFGLPTLINNVETLWWVRDIVEKGADWWKGHGRHERHGLRSFSVSGRVKNPGMKLAPS 416 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT ELI+++CGG+ A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 417 GITVRELIDEYCGGMA-DGHTFYAYLPGGASGGILPAS-MDDIPLDFGTLEKYGCFIGSA 474 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 A++++ + + A L F++ ESCGQCTPCR GT +M++ LL Sbjct: 475 AIVILSQKDSVRAAALNLMKFFEDESCGQCTPCRVGTQKAALLMQK------PVWNRALL 528 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 E+S+ + +IC LG AA+ P+ +IK F +E Sbjct: 529 EELSQAMRDASICGLGQAASNPLTTVIKYFPDEFKE 564 >gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein [Rhodoferax ferrireducens T118] gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Rhodoferax ferrireducens T118] Length = 603 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 16/390 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + L +G D + E+K S LRGRGGAGF+TG+KW + H +V NADE EP Sbjct: 194 AALTQSLARGADATLAEIKRSNLRGRGGAGFATGLKWELCRQAP-GTEHIVVCNADEGEP 252 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ + + EG +A+ +GA F+Y+RGE+ E LQA + A LL Sbjct: 253 GTFKDRVLLSRQADAVFEGMTVAAHVLGARRGFLYLRGEYRFLLEPLQAVLQRRRAEQLL 312 Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G++ + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA G G PT Sbjct: 313 GTHILGQAGFDFDIAIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLGHPTL 372 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+ V I + G + ++G G + GTK+ S+SG P E + L+ Sbjct: 373 VNNVETFCAVAHIAQHGGALWAGIGTPKSTGTKIHSVSGDCARPGLYEYPLGTPVSRLLA 432 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + AV GG S CL A + I D A +V DRS Sbjct: 433 DCGA------RDTQAVQVGGPSGVCLAADEFERRIAFED-------VPTAGAFMVFDRSR 479 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D+ + + F+ HESCG CTPCR GT +++ M++L G + ++D+L+E+ + + Sbjct: 480 DMFEVARGFAHFFAHESCGFCTPCRVGTALLVKRMDKLAGGHGSRDDLDVLFELDRLLHS 539 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 T C LG +A P++ + FRP E+R+ Sbjct: 540 TTHCGLGASACNPLRDTVLKFRPAYEQRLQ 569 >gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas sp. 3As] Length = 597 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 140/395 (35%), Positives = 216/395 (54%), Gaps = 21/395 (5%) Query: 21 SDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +RG + + + G+ + +I + SGLRG GGAGF G KW + + P Sbjct: 220 DAYRARGGY-ALAAAVASGQRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--P 276 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG +IA+ +G ++Y+R E+ R L+ Sbjct: 277 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLE 336 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + A I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A Sbjct: 337 REIARLQADPPCAL-------PHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 389 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 +GL+G PT +N E++ V I+ RGA+W+S FG +G + FS+SG V P Sbjct: 390 EIGLFGRPTLEHNFETLYWVRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAP 449 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL++ +CGG+ L A +PGG+S LPA ++ +D+D L+ G +G+ Sbjct: 450 AGITLKELVDTYCGGM-LDGHTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGS 507 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AA+IV+ A + F++HESCGQCTPCR GTG ++M A + + Sbjct: 508 AAIIVLSDQDRARDAALNVMRFFEHESCGQCTPCRVGTGKAAQLM------QAPQWDHAT 561 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L ++++ + +IC LG AA P++ + F + Sbjct: 562 LEDLNQVMSDASICGLGQAAPNPVRCVQTYFAHEV 596 >gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] Length = 626 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 140/395 (35%), Positives = 216/395 (54%), Gaps = 21/395 (5%) Query: 21 SDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +RG + + + G+ + +I + SGLRG GGAGF G KW + + P Sbjct: 220 DAYRARGGY-ALAAAVASGQRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--P 276 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG +IA+ +G ++Y+R E+ R L+ Sbjct: 277 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLE 336 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + A I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A Sbjct: 337 REIARLQADPPCAL-------PHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 389 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 +GL+G PT +N E++ V I+ RGA+W+S FG +G + FS+SG V P Sbjct: 390 EIGLFGRPTLEHNFETLYWVRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAP 449 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL++ +CGG+ L A +PGG+S LPA ++ +D+D L+ G +G+ Sbjct: 450 AGITLKELVDTYCGGM-LDGHTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGS 507 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AA+IV+ A + F++HESCGQCTPCR GTG ++M A + + Sbjct: 508 AAIIVLSDQDRARDAALNVMRFFEHESCGQCTPCRVGTGKAAQLM------QAPQWDHAT 561 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L ++++ + +IC LG AA P++ + F + Sbjct: 562 LEDLNQVMSDASICGLGQAAPNPVRCVQTYFAHEV 596 >gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus S110] gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus S110] Length = 612 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 146/395 (36%), Positives = 220/395 (55%), Gaps = 21/395 (5%) Query: 21 SDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + G + + L E+ + II ++ SGLRG GGAGF G KW + + P Sbjct: 235 ATYRAHGGY-ALASALVNGEEDAEAIIKTMEDSGLRGLGGAGFPAGRKWRIVRDQPA--P 291 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG V+A+ +G +IY+R E+ R L+ Sbjct: 292 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLVVAAQIVGIEQCYIYLRDEYHDCRALLE 351 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + A I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A Sbjct: 352 TELARLQADPPCAL-------PRIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 404 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT +N E++ V I+ +GA+W+SGFGR +G + FS+SG V +P Sbjct: 405 QVGLFGRPTLEHNFETLYWVRDIVEKGAAWFSGFGRHGRKGLRSFSVSGRVKHPGVKLAP 464 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ELI+++CGG+ +L A +PGG+S LPA +M +D+D L+ G +G+ Sbjct: 465 AGITVQELIDEYCGGM-LDGHSLYAYLPGGASGGILPA-RMNDIPLDFDTLQPYGCFIGS 522 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAV+V+ + A + F++HESCGQCTPCR GT +M + Sbjct: 523 AAVMVLSQHDRARDAALNVMRFFEHESCGQCTPCRVGTAKAAALMHA------PVWDNAT 576 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L ++++ + +IC LG AA PI+ + + F I Sbjct: 577 LEDLAQVMGDASICGLGQAAPNPIRCIQQYFPEEI 611 >gi|307069590|ref|YP_003878067.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus Zinderia insecticola CARI] gi|306482850|gb|ADM89721.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus Zinderia insecticola CARI] Length = 431 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 157/418 (37%), Positives = 243/418 (58%), Gaps = 9/418 (2%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMK 65 + N + + + + RG + + +I+ + ++ IIN +K + LRGRGGAGF T +K Sbjct: 12 LLFNKLNTKNWKIKNYIKRGGYKTIRRIIRNKISKNEIINNLKLTRLRGRGGAGFLTWIK 71 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W+F+ K YL+ N DE EPGT KD I + PH +IEG +IA++ + + Y+ Sbjct: 72 WNFIDKNT-YYQKYLICNTDEGEPGTFKDLQITINNPHLIIEGMLIAAYTLNIDIGYNYI 130 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 GE + + AV E Y LG N K + ++ G G+YICGEE+AL+ES+EG Sbjct: 131 HGEVFKIYNIFKKAVLEAYKYNFLGYNIFKSKINFNLYCFRGYGSYICGEESALIESIEG 190 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 KKGQPR KPPFPAN+GL+ T +NN E+ + + +L+ G Y F N GTK+FSI Sbjct: 191 KKGQPRFKPPFPANIGLFNKSTLINNAETFSNITILLKIGIKKYLNFSNSKNGGTKIFSI 250 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G++ P E + I+ +LI+ G +L A+IPGG S P + +++ MD Sbjct: 251 TGNIKKPGNYEAPLGISLSKLIKLAGG----FKKDLKAIIPGGISTPIIKGKKLKYIYMD 306 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 YD + + S LG+ A+I+++ I+K + +S FY ESCG+C PCREG W+M+++++ Sbjct: 307 YDEILKFKSMLGSGAIILINNKICILKCLLNISNFYYKESCGKCVPCREGIIWIMKLLKK 366 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 + A+ +++DL+ + NI G TICA GDA + I+ IKN+ I Y++C Sbjct: 367 IKNNKAKLKDLDLILSIINNITGNTICAFGDAIYFSIKSYIKNYYKEFILHII-YNKC 423 >gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8] gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8] Length = 378 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 184/316 (58%), Gaps = 4/316 (1%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 IAS+A+GAH ++YVR E+ LQ A+D+ GLLG N G+D DI + GA Sbjct: 1 MTIASYAVGAHQGYVYVRAEYPVAVHRLQIALDQAREYGLLGKNILGKGHDFDIEIRLGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GA++CGEETALL S+EG +G+PR +PPFPA GL+G PT +NNVE+ A + I+R+GA+W Sbjct: 61 GAFVCGEETALLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQIIRKGAAW 120 Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 YS G E ++GTK+F++ G + VE M T E+ + GG A GG Sbjct: 121 YSAMGTEKSKGTKVFALGGKITNVGLVEIPMGTTLREI-IEEIGGGIPEGKAFKAAQTGG 179 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 S C+PA + +DY+ L +GS +G+ +IVMD ++ F ESCG+ Sbjct: 180 PSGGCIPAQHI-DTPIDYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNFTVDESCGK 238 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCR GT +++++E++ G + +++ + +++ +++ ++CALG +A P+ ++ Sbjct: 239 CTPCRVGTRKLLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPNPVLSTLQY 298 Query: 408 FRPLIEERIDQYHRCN 423 F I +C Sbjct: 299 FGDEYLAHIKD-KKCP 313 >gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB] gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Dechloromonas aromatica RCB] Length = 632 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 137/385 (35%), Positives = 205/385 (53%), Gaps = 17/385 (4%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRD 96 G ++E+K + LRGRGGAGF+TG+KW + +V NADE EPGT KDR Sbjct: 225 GPGATLDEIKRANLRGRGGAGFTTGLKWEACRNAPLKAGAQRIVVCNADEGEPGTFKDRV 284 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-- 154 ++ P + EG +A++A+GA F+Y+RGE+ + L A + LLG + Sbjct: 285 LLSRNPDLVFEGMTVAAYAVGATRGFVYLRGEYRYMLDHLNAVLAHRRREKLLGKDILGL 344 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 G D DI +H GAGAY+CGEE+AL+ESLEGK+G PR +PPFP G PT VNNVE+ Sbjct: 345 PGADFDIEIHVGAGAYVCGEESALIESLEGKRGTPRNRPPFPVTNGYLDQPTIVNNVETF 404 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 A I G WY+ G +++ GTKL S+SG P E ++ +++E Sbjct: 405 AAAALIALNGGDWYAAIGTKHSAGTKLLSVSGDCERPGIYEYPFGVSVRQVLEDCGA--- 461 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 + AV G S C+ A Q ++ ++ + G A V + + D+ + Sbjct: 462 ---RDTQAVQVSGPSGICI-AEQEFDRVIGFEDIPTAG------AFTVFNNTRDMFEVAR 511 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 F++HESCG CTPCR GT + +M++L G+ + + ++++ ++ + C LG Sbjct: 512 NYVHFFQHESCGFCTPCRVGTSLLKNLMDKLHNGVGSPYDFAEIEKLNQLLQSMSHCGLG 571 Query: 395 DAAAWPIQGLIKNFRPLIEERIDQY 419 A P+ I+ FRP E R+ Q Sbjct: 572 HTACNPVLDTIERFRPAYERRMAQK 596 >gi|260220425|emb|CBA27950.1| NADH-quinone oxidoreductase subunit F 2 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 600 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 143/395 (36%), Positives = 219/395 (55%), Gaps = 21/395 (5%) Query: 21 SDSMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 ++G + + L +G + +I ++ SGLRG GGAGF G KW + + P Sbjct: 223 DTYKAKGGY-ALAAALSQGTQDAESVIKAMEDSGLRGLGGAGFPAGRKWRIVRDQPA--P 279 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG ++A+ +G +IY+R E+ R L+ Sbjct: 280 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAAQVVGTTACYIYLRDEYHGCRAILE 339 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 + + A+ I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A Sbjct: 340 TEIAKLQANPPCPLPV-------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 392 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT +N E++ V I+ +GASW+S FGR +G + FS+SG V +P Sbjct: 393 QVGLFGRPTLEHNFETLYWVRDIVEKGASWFSSFGRNGRKGLRSFSVSGRVKFPGVKLAP 452 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 I+ EL++++CGG+ NL A +PGG+S PA + +D+D L+ G +G+ Sbjct: 453 AGISVAELVDEYCGGM-LDGHNLYAYLPGGASGGIFPAS-LSHVPLDFDTLQPHGGFIGS 510 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIV+ + A + FY HESCGQCTPCR GT +ME + + Sbjct: 511 AAVIVLSQHDKARDAALNMMRFYAHESCGQCTPCRVGTAKAATLME------SPVWDHTT 564 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L +++ + +IC LG AA P++ + K F + Sbjct: 565 LEDLNVVMTDASICGLGQAAPNPVRCVQKYFAHEV 599 >gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] Length = 570 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 144/403 (35%), Positives = 214/403 (53%), Gaps = 17/403 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 K L+ + G + +K+ + G D +I + + LRG GGAGF TG KW F+ Sbjct: 179 DYKDLAAYRAEGGYGQYEKLRDGGTNADAVIETLSDASLRGMGGAGFPTGKKWGFVRGYE 238 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 P + +NADE EPGT KDR M PH + EG +I + + A ++Y+R E+ Sbjct: 239 G--PRLMTINADEGEPGTFKDRFYMERNPHAMFEGALIGAHCVEAERIYLYMRDEYPAAI 296 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + + + + A+GL I + GAGAYICGEE+A+LES+EGK+G PR +P Sbjct: 297 KVMAECIADIEAAGLAPPGF-------IEMRRGAGAYICGEESAMLESIEGKRGLPRHRP 349 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+ A GL+G PT NNVE++ VP IL G W++ G+ ++ G + +S+SG V P Sbjct: 350 PYIAEAGLFGRPTLNNNVETLYWVPEILANGVEWFTSQGKPDHPGMRSYSVSGRVANPGV 409 Query: 254 VEESMSITFDELIEKHCGGIRGGWD----NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 V+ T +ELIE CGG+ D A +PGG+S LPA + + L Sbjct: 410 VKAPAGSTVNELIEM-CGGMAAKEDGSVQTFKAYLPGGASGGILPADKGDVPLDFGGELA 468 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +G+ +G+ AV+V + + A L F+ HESCGQCTPCR GT M +++ G Sbjct: 469 TLGAFVGSHAVVVFSDADSMKDATLNLIDFFTHESCGQCTPCRGGTEKMGKLLRASSNGG 528 Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 E + ++ + +IC LG AA P+ L+ +FR + Sbjct: 529 DALDETA-IRDLEDVMRDASICGLGQAAPNPVNHLLTHFRKDL 570 >gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] Length = 561 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 139/398 (34%), Positives = 211/398 (53%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ ++ G + + + G + + +++ ASGLRG GGAGF +G KW F+ Sbjct: 182 DYETFDAYVAEGGYAALKDLRADGNWEDVQDKILASGLRGLGGAGFPSGKKWGFVRANAG 241 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERVPHQFLEGMLIAAWAVEAETCFIYMRDEYPAVLH 299 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L + A+G++ I + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 300 ILAEEIKALEAAGIVEEGY-------IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPP 352 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VG++G PT V+N+E++ V I R G S +G + +S+SG + P Sbjct: 353 FVAQVGVFGQPTLVHNIETLHWVSRICREGPEILSSVEHNGRKGLRSYSVSGRIAKPGVF 412 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T E+IE G A PGG S LPA + +D+D L+ +G+ Sbjct: 413 LLPAGSTITEIIEAAGGM--AEGHVFKAYQPGGPSSGLLPAS-INDVPLDFDTLQPLGTF 469 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A + Sbjct: 470 IGSAAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADAWD 523 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +LL ++S + +IC LG AA PI+ ++ +F+ I Sbjct: 524 QELLTDLSTAMVDASICGLGQAAPNPIKMVMTHFKDEI 561 >gi|304570556|ref|YP_266102.2| NAD-dependent formate dehydrogenase subunit beta [Candidatus Pelagibacter ubique HTCC1062] Length = 552 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 129/411 (31%), Positives = 206/411 (50%), Gaps = 8/411 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q++ F+ Y + D +S + + K + + I + S L GRGGAGF T Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K S+ Y++ NADE + G DR ++ +P ++ G VI + IG+ Sbjct: 199 GMKWDFCRKAPSE-KKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 +Y+RGE+ + E++ A++ +GLLG N + D+ + G GAYICGEETAL+ S Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIAS 317 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++ + ++PPFP GLY PT VNNVE++A IL GA +S G + + GTKL Sbjct: 318 IEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGTKL 377 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 N P E M +++ GG + + A+ GG +P ++ Sbjct: 378 VCFDSFFNNPGVYEVEMGTPMKKVLNDIGGG---FKEPIKALQIGGPLGGVIPITEIEKL 434 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+ G LG A+++ + + +++ I L F ESCG+C P R G+ + Sbjct: 435 NLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGSYRGKEM 494 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ K K + LL E+ ++ +CAL A PI ++K F + Sbjct: 495 FDQ-AKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 544 >gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] Length = 603 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 141/390 (36%), Positives = 202/390 (51%), Gaps = 17/390 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + G II +KASGLRGRGGAGF TG+KW HY+V NADE EP Sbjct: 195 AALAAAISSG-AHIIEPIKASGLRGRGGAGFPTGLKWEACRDAP-GSEHYVVCNADEGEP 252 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ + EG I + A+GA F+Y+RGE+ E L A + S LL Sbjct: 253 GTFKDRVLLNSHADLVFEGMTICALAVGARKGFLYLRGEYRYLLEPLHATLQRRRESNLL 312 Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G + + G+D DI +H GAGAYICGEE+AL+ESLEGK+G PR +PPFP G PT Sbjct: 313 GESILGRAGFDFDIDIHVGAGAYICGEESALIESLEGKRGVPRNRPPFPVTHGYLQQPTA 372 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 ++NVE+ L GA Y G + G+KL S+SG P E ++ E+++ Sbjct: 373 IDNVETFCQAVLALYLGAERYRAIGTAKSTGSKLISVSGDCPRPGIYEYPFGVSVREVLQ 432 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 N +AV G S C+ + + ++ L G A +V D S Sbjct: 433 DCGAV------NTIAVQVSGPSGACVGESE-FDRKLGFEDLPTAG------AFMVFDDSR 479 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D+ + F+ HESCG CTPCR GT + M+++ G + +++ + + + ++ Sbjct: 480 DMFEVARNYVHFFAHESCGFCTPCRVGTSMLKSTMDKIANGHGTRYDLNEVENLDRVLQT 539 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 + C LG A P+ +K+FRP E R+ Sbjct: 540 TSHCGLGRTACNPVLHTLKHFRPAYENRLK 569 >gi|121603736|ref|YP_981065.1| NADH dehydrogenase (quinone) [Polaromonas naphthalenivorans CJ2] gi|120592705|gb|ABM36144.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polaromonas naphthalenivorans CJ2] Length = 600 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 142/395 (35%), Positives = 215/395 (54%), Gaps = 21/395 (5%) Query: 21 SDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + + G + + L E+ + ++ ++ SGLRG GGAGF G KW + + P Sbjct: 223 ATYRAHGGY-ALAASLVNGEEDAERVLAAMENSGLRGLGGAGFPAGRKWRIVRGQPA--P 279 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG ++A+ +G +IY+R E+ R LQ Sbjct: 280 RLMAVNIDEGEPGTFKDRVYLERDPHRFLEGVLVAAQVVGIEACYIYLRDEYHDCRALLQ 339 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A + + A I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A Sbjct: 340 AEIAKLQADPPCPLPL-------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 392 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT +N E++ V I+++G W+S FGR +G + FS+SG V P Sbjct: 393 EVGLFGRPTLEHNFETLYWVRDIVQKGPQWFSSFGRNGRKGLRSFSVSGRVKLPGVKLAP 452 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT ELI+++CGG+ L A +PGG+S PA +D+D L+ G +G+ Sbjct: 453 AGITLLELIDEYCGGMA-DGHTLYAYLPGGASGGIFPASH-ANVPLDFDTLQPHGGFIGS 510 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIV+ + A + F+ ESCGQCTPCR GT R+M A + + Sbjct: 511 AAVIVLGQHDKARDAALNMMRFFASESCGQCTPCRVGTAKAARLM------QAPRWDNAT 564 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L +++ + +IC LG AA P++ + K F + Sbjct: 565 LEDLNIVMTDASICGLGQAAPNPVRCVQKYFAHEV 599 >gi|218678678|ref|ZP_03526575.1| NADH dehydrogenase I subunit F [Rhizobium etli CIAT 894] Length = 269 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 217/269 (80%), Positives = 241/269 (89%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269 LF +SGHVN PCTVEE M ITF EL+++H Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRH 269 >gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath] gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath] Length = 561 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 143/397 (36%), Positives = 212/397 (53%), Gaps = 19/397 (4%) Query: 18 KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 +S + + G + + + +I +++SGLRG GGAGF G KW + + Sbjct: 181 RSYAAYQADGGYQLYQDCRSGHRSPEEVIALLESSGLRGLGGAGFPVGRKWRIVRAQPA- 239 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 P + VN DE EPGT KDR + +PH +EG +IA++A+G +IY+R E+ R+ Sbjct: 240 -PRLMAVNIDEGEPGTFKDRHYLERDPHRFLEGMLIAAWAVGIESIYIYLRDEYAGCRQI 298 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L + + + G +I + GAGAYICGEE+A++ES+EGK+G PRL+PPF Sbjct: 299 LLRELQQLREAVP-------GPLPEIQLRRGAGAYICGEESAMIESIEGKRGMPRLRPPF 351 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 A VGL+G PT +N+ES+ V I+ RG W++G GR + +G + FS+SG V P Sbjct: 352 VAQVGLFGRPTLEHNMESLYWVRDIVERGPDWFTGHGRRDRKGLRSFSVSGRVRKPGVHL 411 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 I+ ELI ++CGG+ G + PGG+S LPA + +D+D L G + Sbjct: 412 APAGISVRELIAEYCGGMAEGHE-FYGYFPGGASGGILPAS-LGDLPLDFDTLTPYGCFI 469 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 G+AAV+V F+ ESCGQCTPCR GT +M + + Sbjct: 470 GSAAVVVFSTQDKARDLALNAMRFFAEESCGQCTPCRVGTAKAAALMA------QPQWDR 523 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E++ + +IC LG AAA P++ +K F Sbjct: 524 PLLEELAGAMSDASICGLGQAAANPLRCAMKYFPEEF 560 >gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] Length = 633 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 149/395 (37%), Positives = 226/395 (57%), Gaps = 19/395 (4%) Query: 20 LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L+ +RG + + + RD ++ ++ SGLRG GGAGF G KW + + + P Sbjct: 225 LAAYRARGGYRLAADVAQGRVPRDAVLAAMEDSGLRGLGGAGFPAGRKWRIVREQPA--P 282 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG ++A+ +G ++Y+R E+ R LQ Sbjct: 283 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQ 342 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E A + I++ GAGAYICGEE+A++ES+EG++G+PR++PP+ A Sbjct: 343 QALAELRADPPCALPA-------IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIA 395 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT +N E++ V I++ G W++GFGR RG + FS+SG V P Sbjct: 396 QVGLFGRPTLEHNFETLYWVRDIVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAP 455 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL++++CGG+ G + L A +PGG+S LPA ++ +D+D L+ G +G+ Sbjct: 456 AGITLRELVDEYCGGMAEGHE-LYAYLPGGASGGILPA-RLADVPLDFDTLQPYGCFIGS 513 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIV+ R+ A + F+ HESCGQCTPCR GT R+M A + D Sbjct: 514 AAVIVLGRNDRARDAALNVMRFFAHESCGQCTPCRVGTDKAARLM------QAPVWDGDT 567 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L +++ + +IC LG AA PI+ + K F + Sbjct: 568 LDDLALVMADASICGLGQAAPNPIRCMHKYFAHEV 602 >gi|91762193|ref|ZP_01264158.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717995|gb|EAS84645.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 552 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 130/411 (31%), Positives = 206/411 (50%), Gaps = 8/411 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q++ F+ Y + D +S + + K + + I + S L GRGGAGF T Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFKEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K S+ Y++ NADE + G DR ++ +P ++ G VI + IG+ Sbjct: 199 GMKWDFCRKAPSE-KKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 +Y+RGE+ + E++ A++ +GLLG N + D+ + G GAYICGEETAL+ S Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIAS 317 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++ + ++PPFP GLY PT VNNVE++A IL GA +S G + + GTKL Sbjct: 318 IEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGTKL 377 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 N P E M +++ GG + + A+ GG +P ++ Sbjct: 378 VCFDSFFNNPGVYEVEMGTPMKKVLNDIGGG---FKEPIKALQIGGPLGGVIPITEIEKL 434 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+ G LG A+++ + + +I+ I L F ESCG+C P R G+ + Sbjct: 435 NLDFQEFTAAGFMLGHASIVSIPKDFPMIEYIHHLFEFSAEESCGKCFPGRLGSYRGKEM 494 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ K K + LL E+ ++ +CAL A PI ++K F + Sbjct: 495 FDQ-AKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 544 >gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Alicycliphilus denitrificans BC] gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans BC] Length = 633 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 149/395 (37%), Positives = 226/395 (57%), Gaps = 19/395 (4%) Query: 20 LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L+ +RG + + + RD ++ ++ SGLRG GGAGF G KW + + + P Sbjct: 225 LAAYRARGGYRLAADVAQGRVPRDTVLAAMEDSGLRGLGGAGFPAGRKWRIVREQPA--P 282 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + VN DE EPGT KDR + +PH +EG ++A+ +G ++Y+R E+ R LQ Sbjct: 283 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQ 342 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E A + I++ GAGAYICGEE+A++ES+EG++G+PR++PP+ A Sbjct: 343 QALAELRADPPCALPA-------IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIA 395 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT +N E++ V I++ G W++GFGR RG + FS+SG V P Sbjct: 396 QVGLFGRPTLEHNFETLYWVRDIVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAP 455 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT EL++++CGG+ G + L A +PGG+S LPA ++ +D+D L+ G +G+ Sbjct: 456 AGITLRELVDEYCGGMAEGHE-LYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGS 513 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIV+ R+ A + F+ HESCGQCTPCR GT R+M A + D Sbjct: 514 AAVIVLGRNDRARDAALNVMRFFAHESCGQCTPCRVGTDKAARLM------QAPVWDGDT 567 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L +++ + +IC LG AA PI+ + K F + Sbjct: 568 LDDLALVMADASICGLGQAAPNPIRCMHKYFAHEV 602 >gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] Length = 611 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 131/391 (33%), Positives = 209/391 (53%), Gaps = 16/391 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + L+ +I +V+ S LRGRGGAGF TG KW ++ Y++ NADE EP Sbjct: 198 QGLQAALQLSPLEVIAQVEESLLRGRGGAGFPTGRKWRLAANTPAE-ERYVICNADEGEP 256 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ +P L G IA++A+GA +Y+RGE+ R L+A + LL Sbjct: 257 GTFKDRVLLTEKPDLLFAGMTIAAYAVGARHGILYLRGEYRYLRAYLEATLQRRREQNLL 316 Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G+ + + DI + GAGAYICGEE++L+ S EGK+G+P+ +PPFP G G PT Sbjct: 317 GAGILGRDDFSFDIRIQMGAGAYICGEESSLISSCEGKRGEPKNRPPFPVQSGYLGHPTV 376 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+++ VP I+ +GA W+ G G + GTKL S+SG P E + +T E++ Sbjct: 377 VNNVETLSCVPRIMEQGAPWFRGMGTTGSSGTKLLSVSGDCVRPGIYEIAFGVTLAEILT 436 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + + A++ GG+S + + + ++ L G A++ + S Sbjct: 437 QAGA------QDAAAIVVGGASGQIVGRTEFH-RRLCFEDLASAG------AIVCFNSSR 483 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +I++A F+ ESCG CTPCR G ++ + +E+++ G + ++D L +S I Sbjct: 484 NILEAAAYYMDFFIEESCGYCTPCRVGNVFLKKGLEKIMHGEGEPEDLDYLRSLSDTIIA 543 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + C LG + PI ++ F + + + Sbjct: 544 TSRCGLGHTSPNPILSTMEYFPLVYSAMVKE 574 >gi|297190828|ref|ZP_06908226.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] gi|297150631|gb|EFH30698.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] Length = 362 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 151/375 (40%), Positives = 205/375 (54%), Gaps = 21/375 (5%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 G +I EV +GL GRGGA F TG KW +D PHYLV NADESEPGT KDR Sbjct: 1 FALGPAGVIREVTDAGLLGRGGAAFPTGRKWQATA-SQADHPHYLVCNADESEPGTFKDR 59 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SK 154 +M +P LIE IA +AIGAH F+Y+RGE+ R L+ A+ A GLLG + Sbjct: 60 VLMEGDPFALIEAMTIAGYAIGAHQGFLYLRGEYPRALGLLENAIASARARGLLGEDVLG 119 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 GY DI + GAGAYICGEETA+ S+EG +G+PR KPPFP GL+G PT VNNVE++ Sbjct: 120 QGYAFDIEIRRGAGAYICGEETAIFNSIEGYRGEPRTKPPFPVEKGLFGKPTAVNNVETL 179 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 V IL TKLF +SG+V P E +T ELIE Sbjct: 180 VNVLPILN-----------GRTEETKLFCLSGNVARPGIYELPFGVTLRELIELAG---- 224 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 D + AV+ GG++ + ++ + ++G + G+ LG+ V+V+D + ++ + + Sbjct: 225 -PPDRMRAVLLGGAAGSFVRPDEL-DIPLTFEGTRAAGTTLGSGVVLVLDDTVELPRVLL 282 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICA 392 R++ F++ ESCGQC PCR GT + R+ G +I LL EV + +IC Sbjct: 283 RIAEFFRDESCGQCVPCRVGTVRQEEALHRIKDRTGADAAGDIALLREVGAAMRDASICG 342 Query: 393 LGDAAAWPIQGLIKN 407 LG A ++ I Sbjct: 343 LGQTAWNAVESAIDR 357 >gi|71062496|gb|AAZ21499.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1062] Length = 509 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 129/411 (31%), Positives = 206/411 (50%), Gaps = 8/411 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q++ F+ Y + D +S + + K + + I + S L GRGGAGF T Sbjct: 96 QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 155 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 GMKW F K S+ Y++ NADE + G DR ++ +P ++ G VI + IG+ Sbjct: 156 GMKWDFCRKAPSE-KKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 214 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181 +Y+RGE+ + E++ A++ +GLLG N + D+ + G GAYICGEETAL+ S Sbjct: 215 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIAS 274 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 +EG++ + ++PPFP GLY PT VNNVE++A IL GA +S G + + GTKL Sbjct: 275 IEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGTKL 334 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 N P E M +++ GG + + A+ GG +P ++ Sbjct: 335 VCFDSFFNNPGVYEVEMGTPMKKVLNDIGGG---FKEPIKALQIGGPLGGVIPITEIEKL 391 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D+ G LG A+++ + + +++ I L F ESCG+C P R G+ + Sbjct: 392 NLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGSYRGKEM 451 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ K K + LL E+ ++ +CAL A PI ++K F + Sbjct: 452 FDQ-AKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 501 >gi|326562844|gb|EGE13132.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 103P14B1] Length = 359 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 139/353 (39%), Positives = 203/353 (57%), Gaps = 9/353 (2%) Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M P LIEG +I+++AIGA ++++RGE++ + Sbjct: 1 GGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAK 60 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 LQ A++EC A+ LLG ++ + VH GAG YICGEETAL+ LEG++ PR KP Sbjct: 61 RLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKP 120 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVN 249 PFP G +G PT VNNVE++ +P IL G WY G+ GTK+ +SG V Sbjct: 121 PFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVK 180 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDYDGL 308 E T ELIE G +L A +PGG+S L A + +MD+D + Sbjct: 181 DAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVMDFDPI 238 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + GS LGT ++V+D S D++ L F++ ESCG CTPCR+G W +++++ + G Sbjct: 239 MKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNG 298 Query: 369 IAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 AQ +ID L E+++++ G+T CA A P+ +K FR E++++ Sbjct: 299 QAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 351 >gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] Length = 657 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 148/433 (34%), Positives = 220/433 (50%), Gaps = 55/433 (12%) Query: 19 SLSDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72 L+ + G + L E + ++ ++ SGLRG GGAGF G KW + + Sbjct: 214 DLATYRAHGGYQ-TAAALVNGEMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAAL 272 Query: 73 ---------------------------------CSDRPHYLVVNADESEPGTCKDRDIMR 99 + VN DE EPGT KDR + Sbjct: 273 AARRAAPSEATAPVPGEGGGHLPPGGSGPREAEERGGTAVMAVNIDEGEPGTFKDRTYLE 332 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 +PH +EG +IA+ +G +IY+R E+ R LQ A+D+ A Sbjct: 333 RDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRALLQKALDDLRAEPPCPL-------P 385 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT +N E++ V Sbjct: 386 HIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRD 445 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I+ RG W++ FGR +G + FS+SG V +P IT ELI+++CGG+ Sbjct: 446 IVERGPQWFASFGRNGRKGLRSFSVSGRVKHPGVKLAPAGITVQELIDEYCGGM-LDGHQ 504 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 L A +PGG+S LPA + +D+D L+ G +G+AAVIV+ + A + F Sbjct: 505 LYAYLPGGASGGILPA-HLNNIPLDFDTLQPYGCFIGSAAVIVLSQHDRARDAALNVMRF 563 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ++HESCGQCTPCR GT +ME + + DLL ++++ + +IC LG AA Sbjct: 564 FEHESCGQCTPCRVGTAKAAALMEA------PQWDADLLDDLAQVMADASICGLGQAAPN 617 Query: 400 PIQGLIKNFRPLI 412 PI+ + K F + Sbjct: 618 PIRCIHKYFPHEV 630 >gi|329902903|ref|ZP_08273301.1| tungsten-containing formate dehydrogenase beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548567|gb|EGF33228.1| tungsten-containing formate dehydrogenase beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 573 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 221/396 (55%), Gaps = 18/396 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 L+ + G + + + + R + ++ ++ SGLRG GGAGF G KW + Sbjct: 188 DLAAYRTYGGYGLLAECVSGTRALESVLKTMEDSGLRGLGGAGFPAGRKWRIVGAEAG-- 245 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + VN DE EPGT KDR + +PH +EG +IA++A+G +IY+R E+ R L Sbjct: 246 PRLMAVNIDEGEPGTFKDRTYLERDPHRFLEGMLIAAWAVGIDDIYIYLRDEYHACRALL 305 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + A + + I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ Sbjct: 306 DTELAQLRA------DPPMDNMPAIHLRRGAGAYICGEESAMIESIEGKRGLPRLRPPYV 359 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +N E++ V IL GA W++ GR +G + FS+SG + P Sbjct: 360 AQVGLFGRPTLEHNFETLYWVRRILEEGAGWFTSHGRHGRKGLRSFSVSGRIRLPGVHLA 419 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT ELI+++CGG+ L A +PGG+S LPA M +D+D L+E G +G Sbjct: 420 PAGITIQELIDEYCGGM-QEGHQLYAYLPGGASGGILPAS-MNAIPLDFDTLQEHGCFIG 477 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AA++V+ + + A L F+K ESCGQCTPCR GT + ++E + ++ Sbjct: 478 SAAIVVLSQHDTAVNAARNLMRFFKEESCGQCTPCRVGTAKALALIE------QPQWDVA 531 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL ++S + +IC LG AA PI +++ F + Sbjct: 532 LLADLSTVMRDASICGLGQAAPNPIDCVVRYFPHEL 567 >gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxidans DMS010] gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxydans DMS010] Length = 565 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 145/400 (36%), Positives = 217/400 (54%), Gaps = 18/400 (4%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 + + +G ++ +E + +++ + SGLRG GGAGF G KW + Sbjct: 181 IDPILFESYIEQGGYNTYRLCMEGQFEVEKVLDVMDDSGLRGLGGAGFPVGRKWRIVRDQ 240 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 + P + VN DE EPGT KD+ + +PH +EG +IA++A+G +IY+R E+ Sbjct: 241 PA--PKLMAVNIDEGEPGTFKDKYYLDRDPHCFLEGTLIAAWAVGIEEVYIYLRDEYAAI 298 Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 RE L+ + + A N + + + GAGAYICGEE+A++ES+EGK+G PRL+ Sbjct: 299 REMLEVEMAKLQA------NPPVANMPKLHLRRGAGAYICGEESAMIESIEGKRGMPRLR 352 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPF A VGL+G PT +N+ES+ V IL +GAS + GR G + FS+SG VN P Sbjct: 353 PPFVAQVGLFGRPTLEHNMESLYWVRDILEKGASCMTDHGRHGRTGLRSFSVSGRVNKPG 412 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 IT ELI+++C G+ PGG+S LPA M +D+D L + G Sbjct: 413 VHLAPAGITMRELIDEYCDGM-LDGHEFYGYFPGGASGGILPAS-MGDIPLDFDTLNDHG 470 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G+AAV+V + F++ ESCGQCTPCR GT + +M ++ Sbjct: 471 CFIGSAAVVVFSDKDQARELAVNAMKFFEDESCGQCTPCRVGTAKAVNLM------QEKQ 524 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + DLL E+S+ + +IC LG AA P++ +IK F + Sbjct: 525 WDQDLLEELSQVMVDASICGLGQAAPNPLRCVIKYFPEEL 564 >gi|295699179|ref|YP_003607072.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] gi|295438392|gb|ADG17561.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002] Length = 414 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 146/399 (36%), Positives = 211/399 (52%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G L +RG + + K L+ + II E+ + LRG GGAGF KW+ + D Sbjct: 16 GADLDAWFARGGGEGLAKALD-DPEAIIAELAQADLRGMGGAGFPAHRKWAPVA-AAPDG 73 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N +E EPGT KDR ++ H PH +IEG +IA+ A A+ +YV + Sbjct: 74 DKYVVCNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAVATRANHVVLYVNPHQTSSLAAT 133 Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV++ + + +G + + V +G YI GEETA++ S+EG PR KPPF Sbjct: 134 REAVEQWSGHPQFAAVERWIGAPLSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G++G PT VNNVE++A VP ILR GA WY G N GTKL+S+SG V P E Sbjct: 194 PAEQGVHGAPTIVNNVETLAHVPGILRHGAQWYRELGVGNAAGTKLYSLSGDVLRPGLYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + + L+ +H GG+ AV GG S L + +D+D +++ S L Sbjct: 254 LPMGTSLETLVFQHGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFDSVRQRRSRL 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IV+ T I++ + F+ SCGQC PC+ GT MMR++ RL G + ++ Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 D L + + + G C L D A ++ I FR E Sbjct: 372 DALENLCRVLPGSGRCGLIDGAVTVVESSIDQFRAEYEA 410 >gi|319794267|ref|YP_004155907.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Variovorax paradoxus EPS] gi|315596730|gb|ADU37796.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus EPS] Length = 595 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 145/394 (36%), Positives = 218/394 (55%), Gaps = 21/394 (5%) Query: 22 DSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 +RG + + + G D ++ + SGLRG GGAGF G KW + + + P Sbjct: 219 AYRARGGYQ-LAAAVASGARPVDDVLKTMTDSGLRGLGGAGFPAGRKWGIVRQQLA--PR 275 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KDR + +PH ++G +IA+ +G ++Y+R E+ R L+ Sbjct: 276 LMAVNIDEGEPGTFKDRTYLERDPHRFLDGLLIAATVVGIDACYVYLRDEYHGCRAILER 335 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + A+ I + GAGAYICGEE+A++ES+EGK+G+PR++PP+ A Sbjct: 336 ELALLQANPPCAL-------PRIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQ 388 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 +GL+G PT +N E++ V I+ RGA+W+S FGR G + FS+SG V P Sbjct: 389 IGLFGRPTLEHNFETLYWVRDIVERGAAWFSDFGRNGRHGLRSFSVSGRVREPGVKLAPA 448 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT EL+++ CGG+ G D L A +PGG+S LPA M +D+D L+ G +G+A Sbjct: 449 GITLRELVDEFCGGMLPGHD-LYAYLPGGASGGILPAS-MSDIPLDFDTLQPHGCFIGSA 506 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AVIV+ + A + F++HESCGQCTPCR GTG R+M + L Sbjct: 507 AVIVLSQKDRARDAALNMMHFFEHESCGQCTPCRVGTGKAARLMA------EPHWDHATL 560 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++++ + +IC LG AA P++ + K F + Sbjct: 561 EDLNQVMVDASICGLGQAAPNPVRCVQKYFPHEV 594 >gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15] Length = 571 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 157/400 (39%), Positives = 230/400 (57%), Gaps = 19/400 (4%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 + + L+D S G + + E D + E++ +GLRG GGAGF T KW + Sbjct: 180 IHWQKLADYRSAGGYQLLKDCREGRVTVDSLAEELEHAGLRGLGGAGFPTYRKWQAVRAE 239 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 P Y V+NADE EPGT KDR + EPH +EG +++++A+ A +IY+R E+ Sbjct: 240 PG--PRYAVINADEGEPGTFKDRYYLEREPHGFLEGALVSAWAVEAQALYIYLRDEYPGL 297 Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 L+ A+ E +G++ +I+ GAGAYICGEE+AL+ESLEGK G+PR + Sbjct: 298 LVVLKDAIAELETAGIVEPGF-------VILRRGAGAYICGEESALIESLEGKPGKPRHR 350 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPF A GL+G PT VNNVE++ +P I +GA WY+ GR +G + FS+SG V P Sbjct: 351 PPFVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWYASQGRHGRKGLRSFSVSGRVARPG 410 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 +T +ELIE++CGG+ L+A +PGG+S LPA + +D+D L+E G Sbjct: 411 VHVAPAGVTLNELIEEYCGGMA-EGHRLVAYLPGGASGGILPASK-ADIPLDFDTLQEHG 468 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G+AAVIV+ D+ A L F+ ESCGQCTPCR GT M+ ++ER Sbjct: 469 CFIGSAAVIVLSDQDDLQAAAANLLGFFADESCGQCTPCRVGTEKMLTLLER------DT 522 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L +++ + +IC LG AA P+ L+++FR + Sbjct: 523 WDEQTLQQLAAVMADASICGLGQAAPNPVLSLLRDFRSEL 562 >gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] Length = 563 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 139/404 (34%), Positives = 213/404 (52%), Gaps = 19/404 (4%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSF 68 T+ + + S ++ G + + + E G + + ++V ASGLRG GGAGF +G KW F Sbjct: 176 THAHVPDYEGYSAYVANGGYAQLQALREGGDWEDVQDKVLASGLRGLGGAGFPSGKKWGF 235 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 + P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E Sbjct: 236 VRGNA--CPRYLAVNGDEGEPGTFKDRYYLERMPHLFLEGMLIAAWAVEADTCFIYMRDE 293 Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + + L + +G++ I + GAGAYICGEE+A++ES+EGK+G Sbjct: 294 YPAVLDILALEIKALEGAGIVAEGY-------IDLRRGAGAYICGEESAMIESIEGKRGL 346 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR +PPF A VG++ PT V+NVE++ V I R G + + G + +S+SG V Sbjct: 347 PRHRPPFVAQVGIFDRPTLVHNVETLLWVARICREGPEVLNSTEKNGRVGLRSYSVSGRV 406 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P T ++IE G A PGG S LPA + +D+D L Sbjct: 407 AQPGVYLLPAGSTITDIIEAAGGM--AAGHVFKAYQPGGPSSGLLPA-TINDVPLDFDTL 463 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + +G+ +G+AAV+V+ A + F++ ESCGQCTPCR G +++M Sbjct: 464 QPLGTFIGSAAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 517 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 A + LL ++ + +IC LG AA PI+ ++++F+ + Sbjct: 518 QADAWDQPLLEDLCTAMADASICGLGQAAPNPIKLVMQHFKDEV 561 >gi|238020589|ref|ZP_04601015.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147] gi|237867569|gb|EEP68575.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147] Length = 417 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 142/400 (35%), Positives = 205/400 (51%), Gaps = 5/400 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 L G L+ ++ G + + L D I ++ +GL G GGAGF T KW+ M + S Sbjct: 15 LVGSDLNAWLAVGGGEGLLNALT-APDNIAKVLEDAGLCGMGGAGFPTHRKWTAMAESPS 73 Query: 75 DR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 + Y+V NA+E EPGT KDR ++ H PH +IEG +IA+ A+ +Y+ Sbjct: 74 ETGDRYVVCNANEDEPGTFKDRFLLEHAPHQVIEGALIAAVYTRANNIILYINPHLTESL 133 Query: 134 ESLQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + + A+ + L + LG + I V +G YI GEETA++ L G P+ K Sbjct: 134 AATREAIAQWQKHALFQRIEAHLGKPLTIKVTESSGRYIGGEETAVISWLNGGFPFPQYK 193 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPFP G+ G PT +NN E++A V ILR GA WY G GR N GTKL+S+SG V Sbjct: 194 PPFPFQKGVAGEPTLLNNTETLAHVSHILRNGAEWYRGLGRANGVGTKLYSLSGDVLNEG 253 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E M IT ELI+ + GG+ AV GG S L A + +D+ KE Sbjct: 254 LFELPMGITLRELIDNYGGGM-LEGRTFKAVFMGGPSNNILTAKDL-DVPLDFVSAKERN 311 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 SGLGT A+IV+ T I++ F+ + SCGQC PC+ GT + R++ER+ G + + Sbjct: 312 SGLGTGAMIVVSEGTSIVRKTADYIQFFANNSCGQCPPCKGGTYQLARLVERVDNGTSTE 371 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ L + + G C L AA + ++ F Sbjct: 372 DDLHALQNLVNIMPGAGRCGLITGAATVVASSMRTFPIEY 411 >gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 558 Score = 365 bits (937), Expect = 9e-99, Method: Composition-based stats. Identities = 140/395 (35%), Positives = 221/395 (55%), Gaps = 19/395 (4%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ E + + V A+GLRG GGAGF TG KW + + P Sbjct: 180 EAYRASGGYKVLERVRSGELTAVSVADLVLAAGLRGLGGAGFPTGTKWKIVHDLPG--PK 237 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 +L +N DE EPGT KDR + +PH L+EG ++A+ AI A ++Y+R E+ E L Sbjct: 238 FLTINGDEGEPGTFKDRYHLESDPHRLLEGALVAAHAISADRIYLYMRDEYPAVLEILNT 297 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 ++ ++G++ +DI + GAGAYICGEE+A++ES+EGK+G PR +PPF A Sbjct: 298 EIEALRSAGII-------TTIDIEIRRGAGAYICGEESAMIESIEGKRGLPRHRPPFIAQ 350 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +N+E++ + I+ +G W++ GR ++G + FS+SG V P Sbjct: 351 VGLFGRPTLNHNIETLFWIRDIVEKGPEWFAEQGRRGHKGFRSFSVSGRVREPGVKLAPA 410 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 IT +EL+E++CGG+ +PGG+S LPA + +D+ L + G +G+ Sbjct: 411 GITMNELLEEYCGGME-DGHIFKGYLPGGASGGILPAS-LADEPLDFGTLDKHGCFIGSH 468 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 A++V D+ A L F+KHESCGQCTPCR GT M +++ + D + Sbjct: 469 AIVVFSDQDDMRDAALNLMRFFKHESCGQCTPCRSGTEKMEKLLAD------GDWDTDKI 522 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 ++ + +IC LG AA+ P+ ++K F E Sbjct: 523 ADLDAVMRSASICGLGQAASNPVASVLKFFSEEFE 557 >gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] Length = 582 Score = 365 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 142/401 (35%), Positives = 218/401 (54%), Gaps = 19/401 (4%) Query: 14 GLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 L L+ + G + + + L + +I+ ++ +GLRG GGAGF T KWS + + Sbjct: 198 ALNPVRLAAYRADGGYALLQRCLDGAVTPEAVIDALQTAGLRGLGGAGFPTARKWSLVRQ 257 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 P + VNADE EPGT KDR + + H ++EG +IA++ +GA +IY+R E+ Sbjct: 258 APG--PRLMAVNADEGEPGTFKDRWYLERDVHRMLEGMLIAAWVVGADAVYIYLRDEYPE 315 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L ++ A+GL +I + GAGAYICGEE+A++ES+EGK+G PR Sbjct: 316 IHAILIEEIEALTAAGL-------ASHTEIHLRRGAGAYICGEESAMIESIEGKRGLPRH 368 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 +PP+ A GL+ PT VNNVE++ V I+ +G W++ G+ + G + +S+SG V P Sbjct: 369 RPPYVAQRGLFDRPTLVNNVETLWWVRDIVEKGGEWFASLGKPGHPGLRSYSVSGRVRNP 428 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 + +T ELIE+HCGG+ +PGG+S LPA M +D+ L++ Sbjct: 429 GVKVVAAGVTARELIEEHCGGM-LDGHAFKGYLPGGASGGILPAS-MADIPLDFGQLEKH 486 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G +G+ AV+++ D+ L F++ ESCGQCTPCR GT +M G Sbjct: 487 GCFVGSHAVVILSDRDDMKDVALNLMRFFEDESCGQCTPCRAGTEKAATLM---ASGHW- 542 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + LL E++ + +IC LG AA PI ++K F + Sbjct: 543 --DQPLLEELTGVMRDASICGLGQAAGNPILSVMKFFPEDL 581 >gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] Length = 561 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 138/398 (34%), Positives = 210/398 (52%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++L+ + G + ++ + +G + ++V ASGLRG GGAGF +G KW F+ Sbjct: 182 DYQTLASYCADGGYAVLEHLRAQGDWQAVQDKVLASGLRGLGGAGFPSGRKWGFVRAHAG 241 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLA 299 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + +G++ I + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 300 ILRREIAALEQAGIVAPGF-------IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPP 352 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VGL+G PT V+NVE++ V + R G S + +G + +S+SG V P Sbjct: 353 FVAEVGLFGRPTLVHNVETLLWVARVCREGPDILSSVEKNGRKGLRSYSVSGRVAQPGMY 412 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++I A PGG S LPA M +D+D L+ + Sbjct: 413 VLPAGSTITDIIAAAG--GMAAGHVFKAYQPGGPSSGLLPA-TMADVPLDFDTLQPHDTF 469 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ + A + F++ ESCGQCTPCR G +++M A + + Sbjct: 470 IGSAAVVVLSQQDRARDAALNMLRFFEDESCGQCTPCRVGCQKAVQLM------QAPEWD 523 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL ++ + +IC LG AA PI+ ++++F I Sbjct: 524 RALLGDLCTAMADASICGLGQAAPNPIRLVMRHFSDEI 561 >gi|218460342|ref|ZP_03500433.1| NADH dehydrogenase I subunit F [Rhizobium etli Kim 5] Length = 263 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 215/263 (81%), Positives = 235/263 (89%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 ML D+DRIFTN+YGL+ KSL +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF Sbjct: 1 MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KWSFMPK RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ Sbjct: 61 PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLE Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S GR NN GTK Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240 Query: 241 LFSISGHVNYPCTVEESMSITFD 263 LF +SGHVN PCTVEE M ITF Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFR 263 >gi|332667238|ref|YP_004450026.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100] gi|332336052|gb|AEE53153.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100] Length = 549 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 194/381 (50%), Gaps = 5/381 (1%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + ++LE + ++ E+ SGLRGRGGAGF +K + + K ++ Y+V NADE +PG Sbjct: 169 LIQLLESDPEQLLEEITLSGLRGRGGAGFPLAIKLAGVKKENAE-EKYIVCNADEGDPGA 227 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 DR ++ + ++ G I+ + GA +Y+R E+ LQ A++ Sbjct: 228 FSDRYLLEQKAQLVLFGMAISGYISGAQDGVLYIRAEYPEAISILQKAIEPFNRIFPHQK 287 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + D + V GAYICGEETALL SLEG + + R +PPFP GL+G PT VNNV Sbjct: 288 RNGERVDFKLHVVKAQGAYICGEETALLSSLEGLRPEVRTRPPFPTQYGLFGKPTAVNNV 347 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 E++A V IL G + G + GTKL S+ + N P E M +I + G Sbjct: 348 ETLANVYAILSDGGMAFKVIGTAKSSGTKLLSLDSYFNNPGLYEVDMGTPLSVVINELGG 407 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 G++ + + A GG +P ++ +D++ G LG A+++ + +++ Sbjct: 408 GLK---EPIKAFHIGGPLGGLVPLHKIADLTIDFESFASQGFLLGHASILSIPTRFPLLE 464 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 + L F HESCG+C PCR G+ ++++ G Q + +L ++ +E ++C Sbjct: 465 YLEHLFAFTAHESCGKCFPCRIGSVRGKELLQKARAGNYQI-DRELWDDLIDTLEKGSLC 523 Query: 392 ALGDAAAWPIQGLIKNFRPLI 412 ALG P++ ++ F + Sbjct: 524 ALGGGLPLPVKNAMQYFPAEL 544 >gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien [Candidatus Puniceispirillum marinum IMCC1322] gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 572 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 139/399 (34%), Positives = 219/399 (54%), Gaps = 19/399 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 + D ++ G + + +L EK + +++ + + LRG GGAGF TG KW + Sbjct: 189 TARRFDDYVADGGYSLLKALLAGEKTAEDVLSVLDNTALRGLGGAGFPTGRKWRIVSGQP 248 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 P + VN DE EPGT KDR + ++PH +IEG +IA+ +G +IY+R E+ Sbjct: 249 G--PRLMAVNGDEGEPGTFKDRLYLSNDPHRMIEGILIATKVVGIDACYIYMRDEYPEII 306 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ + A+GL ++ + GAGAYICGEE+A++ES+EGK+G PR +P Sbjct: 307 ALLKEELAAVEAAGLTDHT-------ELHLRRGAGAYICGEESAMIESIEGKRGLPRHRP 359 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 PF A G++ PT VNNVE++ + I+ +GA W++ G++ + G + +S+SG V P Sbjct: 360 PFVAEKGIFDRPTLVNNVETLYWIRDIVEQGADWFNNQGKDGHPGPRSYSVSGRVAKPGV 419 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 + T +ELI CGG+ + +PGG+S LPA + + L E G Sbjct: 420 IVAPAGSTVEELI-ALCGGMA-DGHSFKGYLPGGASGGILPASKSDIPLDFGGKLAEEGC 477 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 +G+ AV+V+ ++ A L F+ HESCGQCTPCR GT + +M + Sbjct: 478 FVGSHAVVVLSDQDNMWDAATNLLKFFAHESCGQCTPCRNGTEKAVTLM------QSANP 531 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++LL E+S + +IC LG AA+ P+ ++K+F I Sbjct: 532 DVNLLGELSIAMGDASICGLGQAASNPLTSVMKHFPEDI 570 >gi|160902610|ref|YP_001568191.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] gi|160360254|gb|ABX31868.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] Length = 404 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 139/395 (35%), Positives = 230/395 (58%), Gaps = 11/395 (2%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 GKSL + + + L +IN++K SGLRGRGGAGF TG+KW + + D Sbjct: 11 GKSLEEY----DFPGLKNALNMEPQQVINKIKESGLRGRGGAGFPTGIKWETVLSIEDD- 65 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 +++ NADE EPGT KDR ++ + P ++EG +I+ +A G+ +IY+RGE++ + + Sbjct: 66 TKFIICNADEGEPGTFKDRFLLENLPFKVLEGIIISGYATGSKYGYIYIRGEYVEAIKII 125 Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + A+++ Y +LG N + D+ + GAGAY+CG+ET+L+ S+EG +G+ R+KPP Sbjct: 126 KKAIEKLYEKNILGENILNSDFSFDLKLVRGAGAYVCGDETSLINSIEGDRGKSRIKPPL 185 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P GLYG PT VNNVE++A I+ + YS G E +RGTKL SISG VN P E Sbjct: 186 PVFEGLYGKPTVVNNVETLAAAAEIMSYDNNPYSEMGTEKSRGTKLVSISGDVNKPGVYE 245 Query: 256 ESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 +T +++++ GG++ + + VIPGG S L ++ Y+ L++MGS Sbjct: 246 VEFGKLTVKDIVQELAGGVK--GEKIGFVIPGGISTEALTEEEL-DVPYTYENLQKMGSN 302 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK-GIAQKR 373 +G+ +IV+ + ++ + +S F++ E+CG C PCREG + +++ + K G R Sbjct: 303 IGSGGMIVVSSQRNYLEIVKNVSDFFRDETCGTCFPCREGNKNINKIVSDIYKRGYPTSR 362 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408 EI+++ ++ + C G+++ I + + F Sbjct: 363 EIEIISDIQYAVSSAARCGFGESSLNLILSIFEKF 397 >gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] Length = 537 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 140/398 (35%), Positives = 220/398 (55%), Gaps = 19/398 (4%) Query: 19 SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 +L G + ++ + + G I +++ A+GLRG GGAGF TG KW + + Sbjct: 157 NLEAYRKDGGYQKLEDVRSGKVGALDIADQLLAAGLRGLGGAGFPTGTKWKIVNDLPG-- 214 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL +N DE EPGT KDR + +PH L+EG +IA+ A+G ++Y+R E+ E L Sbjct: 215 PKYLTINGDEGEPGTFKDRFHLERDPHRLLEGALIAAHAVGVERIYLYMRDEYPAVLEIL 274 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + +G++ ++D + GAGAYICGEE+A++ES+EGK+G PR +PPF Sbjct: 275 RREISALRDAGII-------TNIDFELRRGAGAYICGEESAMIESIEGKRGLPRHRPPFI 327 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +NVE++ + IL +GA W++ GR ++G + FS+SG V P Sbjct: 328 AQVGLFGRPTLNHNVETLFWIRDILEKGADWFANQGRRGHKGFRSFSVSGRVKEPGVKLA 387 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +T +EL+ + CGG+ N +PGG+S LPA + +D+ L + G +G Sbjct: 388 PAGVTMNELLTEFCGGME-EGHNFKGYLPGGASGGILPAS-LADEPLDFGTLDKHGCFIG 445 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + A++V D+ L F+KHESCGQCTPCR GT M+ ++ + Sbjct: 446 SHAIVVFSDKDDMRDVALNLMQFFKHESCGQCTPCRSGTEKMVSLL------KDPNWDKA 499 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + ++ + +IC LG AA+ P+ ++K F + Sbjct: 500 KIADLDAVMRSASICGLGQAASNPVASVLKFFPEEFDR 537 >gi|316935781|ref|YP_004110763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] gi|315603495|gb|ADU46030.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1] Length = 428 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 163/416 (39%), Positives = 230/416 (55%), Gaps = 12/416 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--- 70 Q SL+ G + + L++ + II V+A+GLRGRGGAGF T KW FM Sbjct: 14 RQPHSLAAWRGLGGYSALSLALKRHSPEAIIAMVEAAGLRGRGGAGFPTANKWRFMRTGS 73 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + YL VN DE+EPG+ KDR +M PH LIEG IA++AIGA I VR E+ Sbjct: 74 ERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYAIGATEVIILVRDEYR 133 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 +L A+ E A+GLLG + G+D+ + VH AG YI GEETAL+ ++EG++ P Sbjct: 134 AAATALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGEETALIAAIEGERPVP 193 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY + GTKL+ ISG V Sbjct: 194 RHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGADWYRSLSFTDEGGTKLYGISGCVE 253 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P +E M T EL+ + G LLA PGG + ++ +D+ K Sbjct: 254 RPQLIEAPMGSTARELLHRAGG--IRNGRALLAFQPGGGATAFFEKAEL-DVPLDFTSTK 310 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + GS LGT A+IV+D + AI R FY ESCG CTPCR+G W+ ++++ L G Sbjct: 311 KAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLDTLEAGK 370 Query: 370 AQKREIDLLYEVSKN--IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + +IDLL++ GR+ C L A P++ ++ F + + + C Sbjct: 371 GTRADIDLLHQHVALSGPSGRSYCDLNTGALTPLRSGLERFGDIFTAHLQGF--CP 424 >gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.] Length = 561 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 141/398 (35%), Positives = 212/398 (53%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L+ S G + ++++ G + ++K SGLRG GGAGF +G KW F+ Sbjct: 182 DYEDLAAYRSAGGYARLEELRAGGDWQEVQAQIKQSGLRGLGGAGFPSGTKWGFVRSNAG 241 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A +FIY+R E+ Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETSFIYMRDEYPAVLH 299 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L + +GL+ + I + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 300 ILAQEIAALEGAGLVPAGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 352 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VG++ PT V+NVE++ V ++R G + G + +S+SG V P Sbjct: 353 FVAAVGIHNRPTLVHNVETLLWVARVVREGPECLNAVEHNGRTGLRSYSVSGRVKNPGVH 412 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++I CGG+ A PGG S LPA + +D+D L+ +G+ Sbjct: 413 LLPAGSTITDII-AACGGM-LEGHIFSAYQPGGPSSGLLPAS-IHDVPLDFDTLQPLGTF 469 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A+ + Sbjct: 470 IGSAAVVVLSDQDSPRAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAETWD 523 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL +++ + +IC LG AA PI+ +IK F I Sbjct: 524 QPLLEDLTTAMVEASICGLGQAAPNPIKSVIKYFPSEI 561 >gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16] gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] Length = 602 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 132/391 (33%), Positives = 206/391 (52%), Gaps = 15/391 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 +D+ L + +I + S LRGRGGAGFSTG+KW S+ Y++ NADE EPGT Sbjct: 197 LDQCLLLKPEQVIETIVDSRLRGRGGAGFSTGLKWRLCRDAESE-QKYVICNADEGEPGT 255 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR ++ P + G VIA++AIG +Y+RGE+ ++ L+ + E GLLG Sbjct: 256 FKDRVLLTRAPKKVFVGMVIAAYAIGCRKGIVYLRGEYFYLKDYLERQLQELREDGLLGR 315 Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 G+D DI + GAGAYICG+E+AL+ES EGK+G PR+KPPFP G G PT+VN Sbjct: 316 AIGGRAGFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTSVN 375 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE+ A V I+ GA W+ G ++ GT+L S++G + P E +T +E++ Sbjct: 376 NVETFAAVSRIMEEGADWFRAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVLAMV 435 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 + AV G S C+ + + Y+ L A + + D+ Sbjct: 436 GA------RDARAVQISGPSGECVSVAKDGERKLAYEDLS------CNGAFTIFNCKRDL 483 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 ++ + F+ ESCG C PCR G + R +E ++ G A ++++D + + + Sbjct: 484 LEIVRDHMQFFVEESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRRTS 543 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 C LG + PI ++ F + + ++ ++ Sbjct: 544 RCGLGATSPKPILTTLEKFPEIYQNKLVRHE 574 >gi|118589441|ref|ZP_01546847.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614] gi|118438141|gb|EAV44776.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614] Length = 540 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 143/397 (36%), Positives = 218/397 (54%), Gaps = 19/397 (4%) Query: 20 LSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + G + ++++ E I ++ +GLRG GGAGF TG KW + + + P Sbjct: 161 LDSYRAAGGYALLERVRAGELDAVEIADKALDAGLRGLGGAGFPTGTKWKIVHDLPA--P 218 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YL +N DE EPGT KDR + +PH L+EG +IA+ A+ A ++Y+R E+ E L+ Sbjct: 219 KYLTINGDEGEPGTFKDRVHLERDPHRLLEGALIAAHAMSAARIYLYMRDEYPAVLEILR 278 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 ++ +G++ +DI + GAGAYICGEE+A++ES+EGK+G PR +PPF A Sbjct: 279 TEIEALRQAGII-------TTIDIELRRGAGAYICGEESAMIESIEGKRGLPRHRPPFIA 331 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+ PT +NVE++ + I+ +G W++ GR ++G + FS+SG V P Sbjct: 332 QVGLFDRPTLNHNVETLFWIRDIVEKGPEWFASQGRRGHKGYRSFSVSGRVKEPGVKLAP 391 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT +EL+ + CGG+ +PGG+S LPA + +D+ L + G +G+ Sbjct: 392 AGITMNELLVEFCGGME-DGHAFKGYLPGGASGGILPAS-LADEPLDFGTLDKYGCFIGS 449 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A++V D+ L F+KHESCGQCTPCR GT M ++ G K +I Sbjct: 450 HAIVVFSDQDDMRDVALNLMRFFKHESCGQCTPCRSGTEKMEHLL---AAGDWDKAKIAD 506 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 L V + +IC LG AA+ P+ ++K F E Sbjct: 507 LDAV---MRSASICGLGQAASNPVTSVLKFFPEEFEA 540 >gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein [Cupriavidus metallidurans CH34] gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Cupriavidus metallidurans CH34] Length = 602 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 131/391 (33%), Positives = 205/391 (52%), Gaps = 15/391 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 +D L + +I+E+ S LRGRGGAGF+TG+KW + SD Y++ NADE EPGT Sbjct: 197 LDHCLTLRPEQVIDEIIESKLRGRGGAGFTTGLKWQLCRRALSD-TKYVICNADEGEPGT 255 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR ++ P + G IA+ AIG +Y+R E+ ++ L+ + + GLLG Sbjct: 256 FKDRALLTRSPKEVFIGMAIAAHAIGCRHGIVYLRAEYFYLKDYLERQLQQLRDDGLLGR 315 Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 +D DI + GAGAYICG+E+AL+ES EGK+G PR+KPPFP G G PT VN Sbjct: 316 AIGVRRDFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTCVN 375 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE+ A V I+ GA W+S G ++ GT+L S++G + P E +T +E++ Sbjct: 376 NVETFAAVSRIMEEGADWFSAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVLAMV 435 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 AV G S C+ + + Y+ L A + +R+ D+ Sbjct: 436 GA------KEARAVQISGPSGECVSVEKDGERRLAYEDLS------CNGAFTIFNRNRDL 483 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 + + F+ ESCG C PCR G + R +E ++ G A ++++D + + + Sbjct: 484 LDIVKDYMQFFVDESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRKTS 543 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 C LG + PI ++ F + ++++ ++ Sbjct: 544 RCGLGATSPKPILTTLEKFPEIYQDKLVRHE 574 >gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] Length = 626 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 147/390 (37%), Positives = 210/390 (53%), Gaps = 16/390 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + K II+ ++ SGLRG GGAGF+TG KW F ++ H+++ NADE EP Sbjct: 215 AGLAKAATITPTQIISAIEESGLRGCGGAGFTTGRKWRFAASERAE-KHFVICNADEGEP 273 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ PH LIEG IA+ A+GA +Y+RGE++ RE L ++E GLL Sbjct: 274 GTFKDRVLLTERPHLLIEGMTIAARAVGAREGILYLRGEYVYLRELLLQVLEERRWRGLL 333 Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G + G+D DI + GAGAYICGEE AL+ S EG G+P+ +PPFP N G G PT Sbjct: 334 GKDILGVKGFDFDIRLQLGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPTV 393 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+ IL +GA+W++ G E + GTKLFS+ G P E T EL+ Sbjct: 394 VNNVETFCHAARILDKGAAWFNAMGMEGSHGTKLFSVCGDCLNPGIYELPYGHTVWELLA 453 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 G ++ AV GG S + + +D L G A+IV + Sbjct: 454 MVGG------EDAAAVQVGGPSGTMIARDSFH-RKLTFDDLATGG------AIIVFNGER 500 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 ++++ + F+ HESCG CTPCR G ++ + +++ KG+A +ID L ++S I Sbjct: 501 NVLEIVEYYMSFFVHESCGYCTPCRVGNVFLQKAIQKFRKGLANPEDIDYLKDLSGTIIE 560 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417 + C LG + P+ +KNF + I Sbjct: 561 TSRCGLGMTSPNPVLTTLKNFPLVYSAVIK 590 >gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1] gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 563 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 147/395 (37%), Positives = 219/395 (55%), Gaps = 21/395 (5%) Query: 22 DSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + G + + L + +I+ ++ +GLRG GGAGF G KW + + P + Sbjct: 185 AYRAAGGYRVLADCLSGRREPASVIDTLERAGLRGMGGAGFPAGRKWRTLRDQPA--PRH 242 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VVN DE EPGT KDR + +PH +EG +IA++AI A ++Y+R E+ R L+ Sbjct: 243 VVVNIDEGEPGTFKDRHYLESDPHRFLEGALIAAWAIEADAIWLYLRDEYAAARALLRQC 302 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + E A G + + GAGAYICGEE+AL+ES+EGK+G PRL+PP A V Sbjct: 303 LAELQADPP-------GPLPAMHLRRGAGAYICGEESALIESIEGKRGLPRLRPPLVAQV 355 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+G PT +N+E++ V IL GA W++ GR +G + +S+SG V +P Sbjct: 356 GLFGHPTLAHNLETLHWVRDILAHGADWFADQGRHGRQGLRSYSVSGRVRHPGVHLAPAG 415 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG--SGLGT 317 IT ELI+++CGG+ G + L A PGG+S LPA +D+D L+ +G+ Sbjct: 416 ITLRELIDEYCGGMAPGHE-LKAFFPGGASGGILPAAA-ADTPLDFDTLQAYDPHCFIGS 473 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIV+ + + +A F++HESCGQCTPCR GT +M R + L Sbjct: 474 AAVIVLSQQDSVREAALNAMRFFQHESCGQCTPCRVGTAKAAALMAR------PVWDAPL 527 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L E++ + +IC LG AA P++ ++K F + Sbjct: 528 LEELADCMADASICGLGQAAPNPLRCVLKYFPEEV 562 >gi|167949925|ref|ZP_02536999.1| NADH-quinone oxidoreductase, chain F [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589392|gb|ABG77205.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 321 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 154/304 (50%), Positives = 203/304 (66%), Gaps = 4/304 (1%) Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 + Y+RGEF E +A ++E A+GLLG + G+D ++ H GAGAY+CGEETAL Sbjct: 13 AGYNYIRGEFWEPYERFEACLEEARAAGLLGEDLFGSGFDFELHAHLGAGAYVCGEETAL 72 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 LES+EGKKGQPR KPPFPA+ GLYG PT +NN ES+A +P IL +G W++ G +N+ G Sbjct: 73 LESIEGKKGQPRFKPPFPAHFGLYGRPTIINNTESLASIPMILEKGGKWFADVGVKNSGG 132 Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298 +KLFSISG++N P E M F EL+E G + AVIPGGSS P +P M Sbjct: 133 SKLFSISGNLNNPGVFEIPMGTPFSELLEMAGGM--KDGRKIKAVIPGGSSSPVIPGEMM 190 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 MDYD + GS LG+ AVIV+D + +++ + R+S FY ESCGQCTPCREGTGW+ Sbjct: 191 MDLTMDYDAIANAGSMLGSGAVIVLDDTNCMVRVLERMSYFYHEESCGQCTPCREGTGWL 250 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 RV+ R+ G + ++DLL +V+ I GRTICALGDAAA P+QG++K FR + ID Sbjct: 251 YRVVSRIENGKGCQEDLDLLDDVAAKIAGRTICALGDAAAMPVQGMLKYFRDEFQYHID- 309 Query: 419 YHRC 422 + RC Sbjct: 310 HQRC 313 >gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus] Length = 604 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 204/392 (52%), Gaps = 15/392 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 ++ L + II+ + S LRGRGGAGFSTG+KW SD Y++ NADE EPGT Sbjct: 197 LELCLALRPEQIIDRIIESKLRGRGGAGFSTGLKWQLCRTAVSD-DKYIICNADEGEPGT 255 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR ++ P + G +IA+ AIG+ +Y+R E+I ++ L+ + E GLLG+ Sbjct: 256 FKDRVLLTRSPKKVFMGMIIAARAIGSRNGILYLRWEYIYLKDYLERQLQELRDEGLLGA 315 Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 G+D DI + GAGAYICG+E+AL+ES EGK+G PR+KPPFP G G PT VN Sbjct: 316 RIGGQSGFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQEGYLGKPTCVN 375 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE+ A I+ G +W+ G + GT+L S++G + P E +T +E++ Sbjct: 376 NVETFAAAARIMEEGPNWFRALGTPESTGTRLLSVAGDCSRPGIYEVEWGVTLNEVLTTV 435 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 + AV G S C+ + M Y+ + A + + D+ Sbjct: 436 GA------RDARAVQISGPSGQCVSVAEDGERRMAYEDIS------CNGAFTIFNTERDL 483 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 ++ + F+ ESCG C PCR G + + +E ++ G A ++++D + ++ + Sbjct: 484 LEIVKDFMQFFVDESCGICVPCRVGNIDLHKKVELVIAGKACQKDLDDVVSWGALVKKTS 543 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 C LG + PI + F + +R+ + + Sbjct: 544 RCGLGATSPNPILTTLDKFPEIYTKRLRKQKK 575 >gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] Length = 609 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 134/391 (34%), Positives = 201/391 (51%), Gaps = 15/391 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + + +I+ S LRGRGGAGFS G+KW D Y++ NADE EPGT Sbjct: 197 IRDAVTLVPMEVIDATSTSKLRGRGGAGFSAGLKWRLCHDAAGD-TKYVICNADEGEPGT 255 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR I+ P + G +IA +AIGA +Y+R E+ + L+ ++ LLG+ Sbjct: 256 FKDRVILTESPEQVFAGMIIAGYAIGAREGILYLRYEYRYLVDYLEKTLNSLRERNLLGA 315 Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 + DI + GAGAYICG+E+AL+ES EGK+G PR+KPPFP + G GCPT VN Sbjct: 316 KIGGNDKFSFDIRIQLGAGAYICGDESALIESCEGKRGTPRVKPPFPVHQGFMGCPTAVN 375 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE++A V I +GA WY G + GT+L S+SG V P E I+ +++E Sbjct: 376 NVETLANVARIFEKGARWYESMGTAESAGTRLISVSGDVEKPGIYEIEWGISLKDVLELV 435 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 N G S C+ A + + Y L GS ++V ++ Sbjct: 436 GA------RNPRVAQISGPSGECVSAAKDGNRVFSYKDLSCNGS------LMVFSYERNL 483 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 ++ + R F+ ESCG CTPCR G + + +++G A ++++D + E + I G + Sbjct: 484 LEIVRRFIHFFMEESCGICTPCRAGNVELYNKVSLIIEGRAVEQDLDEIVEWANIIRGSS 543 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 C LG + PI ++ F ++++ H Sbjct: 544 RCGLGTTSPKPIITSMQAFPEEYKQKLVTQH 574 >gi|218514662|ref|ZP_03511502.1| NADH dehydrogenase I subunit F [Rhizobium etli 8C-3] Length = 283 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 225/283 (79%), Positives = 249/283 (87%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 +MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK RPHYLV Sbjct: 1 GAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 60 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 VNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+D Sbjct: 61 VNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAID 120 Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 ECY GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GL Sbjct: 121 ECYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGL 180 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 YGCPTTVNNVESIAV PTILRRGA W+S GR NN GTKLF +SGHVN PCTVEE M IT Sbjct: 181 YGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTKLFMLSGHVNKPCTVEEEMGIT 240 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 F EL+++H GGIRGGWDNLLAVIPGG+S P +PA + MD Sbjct: 241 FRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIIDCPMD 283 >gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1] gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Mycobacterium vanbaalenii PYR-1] Length = 603 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 133/387 (34%), Positives = 200/387 (51%), Gaps = 15/387 (3%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + + L + ++ + SGLRG GGAGF TG+KW + Y++ NADE EPGT Sbjct: 197 LKRCLANTPEQTVDMISESGLRGFGGAGFRTGLKWRLCRAAPGE-DKYVICNADEGEPGT 255 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 KDR ++ P + G VIA+++IGA +Y+R E+ LQ + E GLLG+ Sbjct: 256 FKDRALLTRSPKDVFLGMVIAAYSIGARDGILYLRAEYAYLARYLQRQLQELRDDGLLGA 315 Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 + G+D DI + GAGAYICGEE+AL+ES EG +G PRLKPP+P G G PTTVN Sbjct: 316 DIGGLPGFDFDIRIQLGAGAYICGEESALIESCEGNRGTPRLKPPYPIQEGYLGKPTTVN 375 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE+ + GA W+ G ++ GT+L S++G + P E IT D+++ Sbjct: 376 NVETFVAASRVTAEGAEWFRSMGTADSAGTRLLSVAGDCSAPGVYEVEWGITLDDVLAMV 435 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 + AV GG S C+ + Y+ + AV + + + D+ Sbjct: 436 GA------PDARAVQIGGPSGECVSVAVDGRRRIAYEDI------PCNGAVTIFNATRDL 483 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 ++ + + F+ ESCG C PCR GT + M R++ G ++++D + I + Sbjct: 484 LECVTDYTKFFADESCGICVPCRAGTVDLHDTMRRILAGNGTRQDLDDVAGRGALIRSTS 543 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERI 416 C LG AA PI + F + +ER+ Sbjct: 544 RCGLGATAANPILTTLTKFPEMYQERL 570 >gi|319637988|ref|ZP_07992752.1| NADH dehydrogenase [Neisseria mucosa C102] gi|317400633|gb|EFV81290.1| NADH dehydrogenase [Neisseria mucosa C102] Length = 417 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 201/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + + Sbjct: 16 GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKN 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +Y+ S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAILYINPHQTESIAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L A + +D+ ++E S Sbjct: 255 ELPMGTTLKSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFAANSCGQCPPCKGGTFQLSRLLNRVDTGIGTPDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3') subunits of formate dehydrogenase and to nuoE and nuoF of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch sediment'] Length = 710 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 144/415 (34%), Positives = 219/415 (52%), Gaps = 16/415 (3%) Query: 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGA 58 L Q R + + L+D++ +G + ++LE+G +INEVKASGL GRGGA Sbjct: 298 FLRGQHRAVLERCGMVDVNDLADALRQGSYATFGRVLEQGDPLAVINEVKASGLTGRGGA 357 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 F KW + + P YLV+N +E EPG KDR +M +PH L+EG ++ +FA GA Sbjct: 358 YFGAAHKWEAC-RNATGSPKYLVINGEEGEPGIFKDRHLMEGDPHRLLEGILLTAFACGA 416 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +++ GE ++ A+ A GLLG + + + + G+G +I GEETA Sbjct: 417 SRGILFINGEAELSARRMENALRSAEAVGLLGERILESDFSFQLELRRGSGGFILGEETA 476 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+E++EGK+ PR KPPFP GL+G PT ++NVE++ VP I+ RGA+W++ G R Sbjct: 477 LMEAIEGKRAMPRPKPPFPVEAGLWGKPTVIHNVETLTAVPLIVSRGAAWFTALG--GGR 534 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKLF +SGH+ P VE M IT LI GG L A + GG S + + + Sbjct: 535 GTKLFGLSGHLARPGIVEVPMRITLRHLI-GEIGGGGKDGQTLKAALVGGPSGVIVRSSR 593 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 ++ + G+ V+ + S I L F ESCG+CTPCREGTG Sbjct: 594 FDEPLIPGGTISP-----GSGGVVALGDSVSIDDVTRTLLTFNAQESCGKCTPCREGTGR 648 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ ++++ ++ L E+++ I ++C LG +A + + F I Sbjct: 649 LLAILQQSQHSGRRQA----LEELAEVIRLASLCGLGQSAPLSLLSALDQFPEDI 699 >gi|313668001|ref|YP_004048285.1| NADH dehydrogenase [Neisseria lactamica ST-640] gi|313005463|emb|CBN86898.1| putative NADH dehydrogenase [Neisseria lactamica 020-06] Length = 417 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIYDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|302349194|ref|YP_003816832.1| Putative sulfur reductase membrane anchor subunit, membrane anchor PsrC-like protein [Acidilobus saccharovorans 345-15] gi|302329606|gb|ADL19801.1| Putative sulfur reductase membrane anchor subunit, membrane anchor PsrC-like protein [Acidilobus saccharovorans 345-15] Length = 487 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 214/390 (54%), Gaps = 7/390 (1%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +SL + G +++ L + +I+EVK S LRGRGGA F TG+KW + + Sbjct: 93 RSLQQYLQLGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAP-T 151 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+VVN DE + G DR +M +P+ +IEG +IA++AIGA + Y+R E+ +++ Sbjct: 152 KYVVVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGKVYFYIRREYPGAVAAVR 211 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV+E +G +GS + G +V++ VH G G+Y+ GEETA++ ++ G++ +P +PP+P Sbjct: 212 RAVEEVREAGYIGSKASRGPNVELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYPT 271 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNVE+++ VP I+ G Y+ G +RGTK+ S+S + P E Sbjct: 272 ERGLFGMPTVVNNVETLSSVPWIIENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEVE 331 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGS-SVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 ++ E++ GG+R G L ++ GG + P LP+ + + L+ +G+ LG Sbjct: 332 FGVSLREVVYDMGGGVRFG--KLKFLVVGGPLAGPVLPSE--LDVKLGVEELRAIGASLG 387 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM-ERLVKGIAQKREI 375 VI T +++A+ + F ESCG+C PCR GT ++ E L +G E Sbjct: 388 HGNVIAFSDDTSMLEALHEIVHFASFESCGKCFPCRLGTARADEILEEALSRGYLTPAEA 447 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 D L ++ + ++C G A I + Sbjct: 448 DELKSIATAMRAASLCGHGQATGDAILSFL 477 >gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Acidovorax ebreus TPSY] gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax ebreus TPSY] Length = 661 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 148/422 (35%), Positives = 222/422 (52%), Gaps = 45/422 (10%) Query: 20 LSDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-- 74 L+ +RG + + L +G D ++ ++ SGLRG GGAGF G KW + + + Sbjct: 225 LAAYRARGGY-ALAAGLAQGHVPADGVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAALA 283 Query: 75 ------------------------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110 + VN DE EPGT KDR + +PH +EG + Sbjct: 284 GRQAAPSEAAAPSAGSGPREAGERGSVALMAVNIDEGEPGTFKDRTYLERDPHRFLEGVL 343 Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAY 170 +A+ +G +IY+R E+ R LQAA+ E A I + GAGAY Sbjct: 344 VAAQVVGTAEVYIYLRDEYHGCRALLQAAIAELQADPPCAL-------PRIELRRGAGAY 396 Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230 ICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT +N E++ V I+ +G W++ Sbjct: 397 ICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRDIVEKGPQWFAS 456 Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 FGR RG + FS+SG V P IT EL++++CGG+ L A +PGG+S Sbjct: 457 FGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMA-EGHVLYAYLPGGASG 515 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 LPA ++ +D+D L+ G +G+AAVIV+ + A + F+ HESCGQCTP Sbjct: 516 GILPA-RLADVPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTP 574 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 CR GT ++M A + D L ++++ + +IC LG AA PI+ + K F Sbjct: 575 CRVGTAKAAQLM------QAPLWDEDTLDDLAQVMADASICGLGQAAPNPIRCIHKYFAH 628 Query: 411 LI 412 + Sbjct: 629 EV 630 >gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] Length = 562 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 219/396 (55%), Gaps = 19/396 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ +D + G + + + G + + +VK +GLRG GGAGF +G KW F+ ++ Sbjct: 185 ETFADYEAEGGYAALKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 242 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E L Sbjct: 243 PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEIL 302 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + +G++ + I + GAGAYICGEE+A++ES+EGK+G+PR +PPF Sbjct: 303 RREIKALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 355 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG++G PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 356 AQVGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKKPGVHLL 415 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++IE CGG+ A PGG S LPA M +D+D L+ G+ +G Sbjct: 416 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MNDIPLDFDTLQPHGTFIG 472 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ A + F++ ESCGQCTPCR G +++M +K + Sbjct: 473 SAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SEKKWDQG 526 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S + +IC LG AA PI+ +K+F + Sbjct: 527 LLEELSTAMVDASICGLGQAAPNPIRLTMKHFPDEV 562 >gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium sp. 4-46] gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium sp. 4-46] Length = 572 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 141/396 (35%), Positives = 209/396 (52%), Gaps = 23/396 (5%) Query: 19 SLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G + ++++ + ++ + LRG GGAGF TG KW + Sbjct: 189 DFDAYRDAGGYRTLERLRAGDLSVEDVLKVLDDGSLRGLGGAGFPTGRKWRSVRGEPG-- 246 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + VN DE EPGT KD+ + +PH +EG +I + + A ++Y+R E+ R+ L Sbjct: 247 PRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAEDVYLYIRDEYPIARQIL 306 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + G + + GAGAYICGEE++L+ES+EGK+G PR KPP+P Sbjct: 307 AREIAKLPPGGP-----------RLHLRRGAGAYICGEESSLIESIEGKRGLPRHKPPYP 355 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 VGL+G PT +NNVE++ + ++ RG W+ GR G + +S+SG V P Sbjct: 356 FQVGLFGRPTLINNVETLYWIRDLIERGPDWWKSHGRNGRTGLRSYSVSGRVREPGVKLA 415 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 +T ELIE+ CGG+ A +PGG+S LPA M +D+ L++ G +G Sbjct: 416 PAGVTIRELIEEFCGGMA-EGHRFAAYLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIG 473 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ DI A L F++ ESCGQCTPCR GT +ME V + D Sbjct: 474 SAAVVVLSDKDDIRGAALNLMRFFEDESCGQCTPCRVGTQKARMLMESGV------WDTD 527 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S+ + +IC LG AA+ P+ +IK F L Sbjct: 528 LLGELSQCMRDASICGLGQAASNPLTSVIKYFPDLF 563 >gi|255068411|ref|ZP_05320266.1| protein HymB [Neisseria sicca ATCC 29256] gi|255047352|gb|EET42816.1| protein HymB [Neisseria sicca ATCC 29256] Length = 417 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 136/398 (34%), Positives = 200/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GVDLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVAGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L A + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|227553185|ref|ZP_03983234.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22] gi|227177711|gb|EEI58683.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22] Length = 394 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 137/394 (34%), Positives = 217/394 (55%), Gaps = 6/394 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 ++ ++ + + A ++ L ++ ++ + Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLS 393 >gi|261363678|ref|ZP_05976561.1| protein HymB [Neisseria mucosa ATCC 25996] gi|288568227|gb|EFC89787.1| protein HymB [Neisseria mucosa ATCC 25996] Length = 417 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVAGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVAEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] Length = 561 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 150/398 (37%), Positives = 214/398 (53%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++L + G + + +I + G I + + +GLRG GGAGF +G KW F+ Sbjct: 182 DYQTLDAYRAEGGYARLAEIRDGGDFETIQQTLLDAGLRGLGGAGFPSGRKWGFVRAAQG 241 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ E Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETCFIYMRDEYPAVLE 299 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L + +GL+ I + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 300 ILAREIAALEEAGLVAPGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 352 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VG++G PT VNNVE++ V +LR G SG + +G + FS+SG V P Sbjct: 353 FVAQVGIFGRPTLVNNVETLLWVARVLREGPEILSGVEKNGRKGLRSFSVSGRVKNPGVH 412 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++IE CGG+ + A PGG S LPA M MD+D L+E G+ Sbjct: 413 LLPAGSTMQDIIE-ACGGM-LDGHSFKAYQPGGPSAGLLPAS-MSDIPMDFDVLQEHGTF 469 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AA++V+ A + F++ ESCGQCTPCR G +++M A + Sbjct: 470 IGSAAIVVLSDRDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADTWD 523 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+ + +IC LG AA PI+ +K+F I Sbjct: 524 QPLLEELCTAMADASICGLGQAAPNPIRLTMKHFPDEI 561 >gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 627 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 146/382 (38%), Positives = 215/382 (56%), Gaps = 15/382 (3%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E+G ++ E++ SGLRGRGGAGF + +KW + HY++ NADE EPGT KDR Sbjct: 190 ERGPTGLLWEIERSGLRGRGGAGFGSDIKWRSC-RDAWGDAHYVICNADEGEPGTFKDRV 248 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KL 155 ++ +++G IA AIGA+ FIY+RGE+ + L+ + + LLG N Sbjct: 249 LLSSYFDLVVDGMCIAGMAIGANKGFIYLRGEYRYLLDRLETRLAQRREQNLLGRNILGR 308 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G+ DI +H GAGAYICGEE+AL+ESLEGK G+PR++PPFP G G PTTVNNVE++A Sbjct: 309 GFSFDIEIHLGAGAYICGEESALIESLEGKPGKPRIRPPFPVTNGYRGQPTTVNNVETLA 368 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + I RG W+ G + GTKL S+SG V P E +T E++E Sbjct: 369 LAALIAVRGGDWFHAIGTPASTGTKLLSVSGDVERPGIYEFPFGVTVAEVLEAAGA---- 424 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + AV G++ CL A + G + ++ + GS ++V DRS D+ + Sbjct: 425 --RDTQAVTSAGAAGHCLAADE-FGRRIAFEDVATGGS------IMVFDRSRDMFEVAHN 475 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 + F+ HESCG CTPCR GT R++++L ++D + ++ + ++G + C LG+ Sbjct: 476 FAHFFAHESCGFCTPCRVGTAVNARLLDKLAADHGSPYDLDEIAKMHRLMQGASHCGLGN 535 Query: 396 AAAWPIQGLIKNFRPLIEERID 417 A I ++ FRP E R+ Sbjct: 536 TATIAIDDMLAKFRPAFERRLH 557 >gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] Length = 566 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 145/398 (36%), Positives = 218/398 (54%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ + + G + + ++ G + + +VK +GLRG GGAGF +G KW F+ + Sbjct: 187 DYETFAAYEAEGGYATLKELRGGGNWEAVQEKVKEAGLRGLGGAGFPSGTKWGFVR--AN 244 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + P YL VN DE EPGT KDR + PH +EG ++A++A+ A AFIY+R E+ E Sbjct: 245 EGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLE 304 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + + ++ I + GAGAYICGEE+A++ES+EGK+G+PR +PP Sbjct: 305 ILRREITALEEAAIVEPGY-------IALRRGAGAYICGEESAMIESIEGKRGEPRHRPP 357 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VG++G PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 358 FVAQVGIFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVH 417 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++IE CGG+ A PGG S LPA M +D+D L+ GS Sbjct: 418 LLPAGSTITDIIE-ACGGM-LEGHAFKAYQPGGPSSGLLPAS-MNDVPLDFDTLQPHGSF 474 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M +K + Sbjct: 475 IGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SEKKWD 528 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 DLL E+S + +IC LG AA PI+ IK+F + Sbjct: 529 QDLLEELSTAMVDTSICGLGQAAPNPIRLTIKHFPEEV 566 >gi|298369169|ref|ZP_06980487.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298283172|gb|EFI24659.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 417 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 134/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV + Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMYVNPHQTESIAA 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVEGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 626 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 148/383 (38%), Positives = 208/383 (54%), Gaps = 18/383 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + K + II+ ++ SGLRG GGAGF+TG KW F ++R +++ NADE EP Sbjct: 215 AGLSKAVSITSSQIISMIEESGLRGCGGAGFTTGRKWRFAAAERTERS-FVICNADEGEP 273 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ PH LIEG IA+ A+GA +Y+RGE++ RE L+ ++E GLL Sbjct: 274 GTFKDRVLLTERPHLLIEGMTIAARAVGAKEGILYLRGEYVYLRELLEQVLEERRRRGLL 333 Query: 150 GSNSKLG---YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 G + LG +D DI + GAGAYICGEE AL+ S EG G+P+ +PPFP N G G PT Sbjct: 334 GK-AILGTKRFDFDIRIQMGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPT 392 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 VNNVE+ IL +GA W+ G E + GTKLFS+ G P E + EL+ Sbjct: 393 VVNNVETFCHAARILDQGAKWFHDIGTEGSHGTKLFSVCGDCLNPGIYELPYGHSVWELL 452 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 E G + AV GG S + + +D L G A+IV + Sbjct: 453 EMVGG------QDAAAVQVGGPSGAMIARDSFH-RKLTFDDLATGG------AIIVFNGQ 499 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 +I++ + F+ HESCG CTPCR G ++ + +E+ KG+A +ID L ++S I Sbjct: 500 RNILEIVDYYMSFFVHESCGYCTPCRVGNVFLQKAIEKFRKGLANPEDIDYLKDLSGTII 559 Query: 387 GRTICALGDAAAWPIQGLIKNFR 409 + C LG + P+ + NF Sbjct: 560 ETSRCGLGMTSPNPVLSTLANFP 582 >gi|309378256|emb|CBX23118.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 417 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQKANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|296314193|ref|ZP_06864134.1| protein HymB [Neisseria polysaccharea ATCC 43768] gi|296839149|gb|EFH23087.1| protein HymB [Neisseria polysaccharea ATCC 43768] Length = 417 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 134/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI + GG+ AV GG S L + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIFDYGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|330882979|gb|EGH17128.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea str. race 4] Length = 334 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 139/336 (41%), Positives = 197/336 (58%), Gaps = 6/336 (1%) Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 TG+KW MPK S YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ Sbjct: 1 PTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYR 60 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179 +I++RGE++ + L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ Sbjct: 61 GYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALI 120 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--R 237 SLEG++ PR KPPFPA VG++G PT VNNVE++ VP I+ G WY RE + Sbjct: 121 NSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDH 180 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GTKL SG V P E + EL E + GG+R G+ L PGG+ L Sbjct: 181 GTKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEH 239 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + A M G+ ++G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W Sbjct: 240 L-DAQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPW 298 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICA 392 ++++ + KG Q +I+ L + + G+T CA Sbjct: 299 SVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTFCA 334 >gi|261400880|ref|ZP_05987005.1| protein HymB [Neisseria lactamica ATCC 23970] gi|269209226|gb|EEZ75681.1| protein HymB [Neisseria lactamica ATCC 23970] Length = 417 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVEGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|225076392|ref|ZP_03719591.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens NRL30031/H210] gi|224952298|gb|EEG33507.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens NRL30031/H210] Length = 417 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +YV S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L + +D+ ++E S Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSMRTFPEEY 410 >gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 608 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 137/393 (34%), Positives = 204/393 (51%), Gaps = 18/393 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADE 86 + + + +G + ++ E+K S LRGRGGAGF+T +KW + + Y+V NADE Sbjct: 188 EALRAAIARGPEAMLAEMKVSNLRGRGGAGFTTYIKWESARRATCRHAPPARYVVCNADE 247 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EPGT KDR ++ + +G +A IGA +Y+RGE+ +LQ ++ + Sbjct: 248 GEPGTFKDRVLLTSHADLVFDGMSVAGVTIGAEKGLLYLRGEYAYLLPALQENLERRRRN 307 Query: 147 GLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GLLG + DI +H GAGAY+CGEETALLESLEGK+G PR++PPFP + G G Sbjct: 308 GLLGPALCGRADLAFDIDIHLGAGAYVCGEETALLESLEGKRGVPRIRPPFPVHAGYRGQ 367 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVE++ I RG +W++G G + + GTKL SISG V P E + + Sbjct: 368 PTVVNNVETLCKAALIAVRGGAWFAGLGTKQSTGTKLLSISGDVESPGIYEYPFGVAVSQ 427 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ G N AV G S CL A+ ++ A +V Sbjct: 428 VLNDCGAG------NAQAVQVSGPSGSCL-------AMHEFSRRIAFEDVPTAGAFMVFG 474 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 D+ + + F+ HESCG CTPCR GT + M+++ G + +I ++++ + Sbjct: 475 AHRDMFEVARNFAHFFAHESCGFCTPCRVGTSLVANCMDKIANGRGSQYDISEIFKIHRL 534 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 + + C LG A P+ + FRP E R+ Sbjct: 535 LHAASHCGLGQTACNPLFDTLNKFRPAYERRLR 567 >gi|209516242|ref|ZP_03265100.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] gi|209503353|gb|EEA03351.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160] Length = 414 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 144/399 (36%), Positives = 207/399 (51%), Gaps = 5/399 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G L + G + + K LE + II E+ + LRG GGAGF KW+ + D Sbjct: 16 GADLDAWFACGGGEGLAKALE-DPEAIIAEIALADLRGMGGAGFPAHRKWAPVA-AAPDG 73 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A A+ +YV Sbjct: 74 DKYVICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAALATRANHVVLYVNPHQTASLAVT 133 Query: 137 QAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV + + S +G V + V +G YI GEETA++ S+EG PR KPPF Sbjct: 134 REAVKQWSGHAQFAAIESWIGGPVSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G++G PT VNN+E++A VP ILR GA WY G + GTKL+S+SG V P E Sbjct: 194 PAEHGVHGAPTIVNNIETLAHVPGILRHGAQWYRDLGVGDAAGTKLYSLSGDVLRPGLYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + + L+ +H GG+ AV GG S L + +D+D +++ S L Sbjct: 254 LPMGTSLETLVFQHGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFDSVRQRRSRL 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IV+ T I++ + F+ SCGQC PC+ GT MMR++ RL G + ++ Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + L + + G C L D A ++ I FR E Sbjct: 372 EALENLCTVLPGSGRCGLIDGAVTVVESSINQFRAEYEA 410 >gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] Length = 576 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 145/404 (35%), Positives = 221/404 (54%), Gaps = 19/404 (4%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSF 68 T+ + ++ + + G + + + G + + +VK +GLRG GGAGF +G KW F Sbjct: 191 THAHVPDYETFAAYEADGGYATLKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGF 250 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 + ++ P YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E Sbjct: 251 VR--ANEGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDE 308 Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + E L+ + +G++ + I + GAGAYICGEE+A++ES+EGK+G+ Sbjct: 309 YPAVLEILRREIKALEDAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGE 361 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR +PPF A VG++G PT V+NVE++ V I R G + + +G + +S+SG V Sbjct: 362 PRHRPPFVAQVGIFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRV 421 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 P T ++IE CGG+ A PGG S LPA M +D+D L Sbjct: 422 KNPGVHLLPAGSTITDIIE-ACGGM-LEGHTFKAYQPGGPSSGLLPAS-MHDVPLDFDTL 478 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + G+ +G+AAV+V+ A + F++ ESCGQCTPCR G +++M Sbjct: 479 QPHGTFIGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 532 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +K + LL E+S + +IC LG AA PI+ +K+F + Sbjct: 533 SEKKWDQGLLEELSTAMVDASICGLGQAAPNPIRLTMKHFPEEV 576 >gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] Length = 570 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 134/398 (33%), Positives = 206/398 (51%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + M+ G ++ + + G + ++ +GLRG GGAGF +G KW F+ Sbjct: 191 DYEPYQSYMNTGGYEALLSLRAGGDWGAVQEQLLEAGLRGFGGAGFPSGKKWGFVRANPG 250 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P YL VN DE EPGT KDR + PH +EG +IA++A+ A F+Y+R E+ E Sbjct: 251 --PRYLAVNGDEGEPGTFKDRWYLERTPHLFLEGMLIAAWAVEAEKVFLYMRDEYPAVLE 308 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + +G++ + + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 309 ILRREIAALENAGVIAPGY-------VDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 361 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 + A VG++G PT V+N+E++ + I R G + + +G + +S+SG V P Sbjct: 362 YVAQVGVFGRPTLVHNIETLHWIARICREGPQVLNATEKNGRKGLRSYSVSGRVAEPGMY 421 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++ G A PGG S LPA M +D+D L+ GS Sbjct: 422 VLPAGSTITDI--TAAAGGMAEGHVFKAYQPGGPSSGLLPAS-MNDLPLDFDTLQPHGSF 478 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M + + Sbjct: 479 IGSAAVVVLSEHDSARAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QEDRWD 532 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S + +IC LG AA PI+ ++K+F I Sbjct: 533 QGLLEELSTAMVDASICGLGQAAPNPIRLVMKHFPDEI 570 >gi|91788666|ref|YP_549618.1| NADH dehydrogenase (quinone) [Polaromonas sp. JS666] gi|91697891|gb|ABE44720.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polaromonas sp. JS666] Length = 566 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 148/396 (37%), Positives = 218/396 (55%), Gaps = 18/396 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 S + G + + + + RD ++ ++ SGLRG GGAGF G KW + Sbjct: 186 DFSSYRAAGGYALLAQCVSGDRDVESVLKTMEDSGLRGLGGAGFPAGRKWRIVRAEAG-- 243 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P + VN DE EPGT KDR + +PH +EG +IA++A+G +IY+R E+ R L Sbjct: 244 PRLMAVNIDEGEPGTFKDRVYLERDPHRFLEGMLIAAWAVGIEKIYIYLRDEYHGCRAML 303 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + +D+ + + I + GAGAYICGEE+A++ES+EGK+G PRL+PP+ Sbjct: 304 ETELDKLRLAPPMAG------MPQIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 357 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VGL+G PT +N E++ V IL +G +W++ GR +G + FS+SG V P Sbjct: 358 AQVGLFGRPTLEHNFETLFWVREILEKGGAWFTSHGRNGRKGLRSFSVSGRVKSPGVKLA 417 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT ELI++HCGG+ A +PGG+S LPA M +D+D L+ G +G Sbjct: 418 PAGITIQELIDEHCGGM-QDGHTFYAYLPGGASGGILPA-TMNSIPLDFDTLQPYGCFIG 475 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAVIV+ A + F+ HESCGQCTPCR GT +ME+ K ++ Sbjct: 476 SAAVIVLSDQDTATNAARNMMRFFHHESCGQCTPCRVGTAKAAHLMEK------PKWDLA 529 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL ++S + +IC LG AA P+ ++K F + Sbjct: 530 LLADLSLVMRDASICGLGQAAPNPMDCVVKYFPHEL 565 >gi|302348415|ref|YP_003816053.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus saccharovorans 345-15] gi|302328827|gb|ADL19022.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus saccharovorans 345-15] Length = 481 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 129/395 (32%), Positives = 211/395 (53%), Gaps = 11/395 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 KSL D ++RG +++ L + +I+EVK S LRGRGGA F TG+KW + + Sbjct: 96 KSLRDYLARGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAP-A 154 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y++VN DE + G DR +M +P+ +IEG +IA++AIGA + Y+R E+ +++ Sbjct: 155 KYVIVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGRVYFYIRREYPGAVAAVR 214 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 AV+E +G L ++ VH G G+Y+ GEETA++ ++ G++ +P +PP+P Sbjct: 215 RAVEEVREAGYLSPPLPS----ELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYPT 270 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT VNNVE+++ VP I+ G Y+ G +RGTK+ S+S + P E Sbjct: 271 ERGLFGMPTVVNNVETLSSVPWIVENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEVE 330 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 ++ E++ GG+R G L V+ GG +P+ ++ + + L+ +G+ LG Sbjct: 331 FGVSLREVVYDMGGGVRFG--KLKGVMIGGPLASLIPSEEL-DVKLGVEELRAIGASLGH 387 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VI T + + + +F ESCG+C PCR GT + R+ KG + E Sbjct: 388 GNVIAFSDDTSVADMLHEVLLFASFESCGKCFPCRLGTAKLERM---FSKGYLTEEEARE 444 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ + ++C G AA + +K F I Sbjct: 445 AMSIANTMAVASLCGHGQAAGQAVAVTLKKFWKEI 479 >gi|149924755|ref|ZP_01913100.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1] gi|149814370|gb|EDM73967.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1] Length = 503 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 162/386 (41%), Positives = 229/386 (59%), Gaps = 17/386 (4%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + DK ++G DWII ++K SGL+GRGGAGF +KW + + ++ Y+VVNADE E Sbjct: 134 YAAFDKARDEGPDWIIEQLKTSGLQGRGGAGFPAHIKWHAV-RTQAELTRYVVVNADEGE 192 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 PGT KDR+IM PH +IEG IA++ GA AFIYVRGEF +L+AA+ E Sbjct: 193 PGTFKDREIMLRRPHRMIEGMAIAAWVAGAAKAFIYVRGEFRDCIRALEAAIAEA----- 247 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 G +DI + G GAYICGEETALLE++EGK+G PRLKPP+P GL+G PT + Sbjct: 248 -GERLDW---LDIEIVEGHGAYICGEETALLEAIEGKRGMPRLKPPYPTEKGLWGKPTLM 303 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 NNVE++A VP IL RG W+ G+ G+KL+ ISGHV P E + ++ DEL+E Sbjct: 304 NNVETLACVPEILSRGGEWFKALGKTE-AGSKLYCISGHVGRPGIYELPLGVSLDELVEA 362 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 G A PGG+S LP +RG +D+ GL ++GS LG+A V+V++ + D Sbjct: 363 AGG----YVGTPKAFSPGGASSGFLPMD-LRGEPLDFGGLAKLGSMLGSAGVVVLNDTVD 417 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + A +F++ ESCGQC PCR G + +++ + + + EV+ ++ Sbjct: 418 MAVAARWQQIFFEDESCGQCAPCRIGCRVQRQAIDKFLDAR-APESLGHVEEVAWEMDAG 476 Query: 389 TICALGDAAAWPIQGLIKNFRPLIEE 414 +IC LG A+ P+Q +K F + Sbjct: 477 SICGLGMVASLPLQSAMKYFGEEFDH 502 >gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] Length = 627 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 144/389 (37%), Positives = 211/389 (54%), Gaps = 19/389 (4%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPG 90 K L K +++ VK SGLRGRGGAGFSTG KW F HY+V NADE EPG Sbjct: 204 KAL-KSPQEVLDSVKESGLRGRGGAGFSTGQKWDFCRAAVGTGPHAAHYVVCNADEGEPG 262 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 T KDR ++ + EG ++ + IGA +Y+RGE+ E L A +++ A+ LLG Sbjct: 263 TFKDRVLLASYAGLVFEGMTVSGYVIGARKGIVYLRGEYRYLLEPLNAVLEKRRAAKLLG 322 Query: 151 SNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 + + G+D DI VH GAGAY+CGEETALLESLEGK+G PR +PPFP G G PT V Sbjct: 323 KSILGRTGFDFDIEVHLGAGAYVCGEETALLESLEGKRGVPRKRPPFPVTAGYLGQPTAV 382 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 NNVE++A I +GA+WY G + GTK+ SISG P E + +++ Sbjct: 383 NNVETLASAALIAAKGAAWYKSIGTPKSAGTKILSISGDCERPGIYEYPYGVKVSQVLAD 442 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 + A G+S C+ + G + ++ + GS + + D + D Sbjct: 443 CGA------RDTQACQIAGASGLCVAPNE-FGRRIAFEDIPTGGSFM------IFDNTRD 489 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + + + F+ HESCG CTPCR GT + M+++ +G + +I+ ++ V + ++ Sbjct: 490 MFQVARNFAHFFVHESCGFCTPCRVGTTLLANAMDKIDEGHGGEYDINDIWRVIRTLKTA 549 Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERID 417 + C LG A + ++ FRP E R++ Sbjct: 550 SHCGLGQTAGNAVADTLQKFRPSYELRLN 578 >gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] Length = 576 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 144/396 (36%), Positives = 217/396 (54%), Gaps = 19/396 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ + + G + + + G + +VK +GLRG GGAGF +G KW F+ ++ Sbjct: 199 ETFAAYEADGGYATLKDLRANGDWEAAQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 256 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E L Sbjct: 257 PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEIL 316 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + +G++ + I + GAGAYICGEE+A++ES+EGK+G+PR +PPF Sbjct: 317 RREIAALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 369 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG++G PT V+NVE++ V + R G + + +G + +S+SG V P Sbjct: 370 AQVGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLL 429 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++IE CGG+ A PGG S LPA M +D+D L+ G+ +G Sbjct: 430 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MHDIPLDFDTLQPHGTFIG 486 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ A + F++ ESCGQCTPCR G +++M +K + Sbjct: 487 SAAVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------GEKKWDQG 540 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S + +IC LG AA PI+ IK+F + Sbjct: 541 LLEELSAAMVDTSICGLGQAAPNPIRLTIKHFPEEV 576 >gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] Length = 576 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 144/396 (36%), Positives = 218/396 (55%), Gaps = 19/396 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ + + G + + + G + + +VK +GLRG GGAGF +G KW F+ ++ Sbjct: 199 ETFAAYEADGGYATLKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 256 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E L Sbjct: 257 PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEIL 316 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + +G++ + I + GAGAYICGEE+A++ES+EGK+G+PR +PPF Sbjct: 317 RREITALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 369 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG++G PT V+NVE++ V + R G + + +G + +S+SG V P Sbjct: 370 AQVGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLL 429 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++IE CGG+ A PGG S LPA M +D+D L+ G+ +G Sbjct: 430 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MHDIPLDFDTLQPHGTFIG 486 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ A + F++ ESCGQCTPCR G +++M +K + Sbjct: 487 SAAVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------GEKKWDQG 540 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S + +IC LG AA PI+ IK+F + Sbjct: 541 LLEELSAAMVDTSICGLGQAAPNPIRLTIKHFPEEV 576 >gi|218510549|ref|ZP_03508427.1| formate dehydrogenase protein, beta subunit [Rhizobium etli Brasil 5] Length = 368 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 186/353 (52%), Gaps = 4/353 (1%) Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 KW + + Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 9 PQASKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATK 67 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 FIY R E+ ++ AV +G+LG + G DI V GAGAY+CGEETALL Sbjct: 68 GFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALL 127 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y FG +RGT Sbjct: 128 NSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGT 187 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 I+G+V Y E + ++ +++++ GG + AV GG P + Sbjct: 188 IPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTA-TRRPVKAVQVGGPLGAYFPRA-LF 245 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ + Sbjct: 246 DTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGV 305 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +++ +GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 306 ETADKIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 358 >gi|261381111|ref|ZP_05985684.1| protein HymB [Neisseria subflava NJ9703] gi|284795911|gb|EFC51258.1| protein HymB [Neisseria subflava NJ9703] Length = 417 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 133/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + + Sbjct: 16 GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKN 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +Y+ S Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACHANKAILYINPHQTESIAS 134 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H G+ AV GG S L A + +D+ ++E S Sbjct: 255 ELPMGTTLKSLIFDHGDGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 312 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCG C PC+ GT + R++ R+ GI + Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFAANSCGHCPPCKGGTFQLSRLLNRVDTGIGTPDD 372 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410 >gi|312144096|ref|YP_003995542.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] gi|311904747|gb|ADQ15188.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] Length = 410 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 152/400 (38%), Positives = 234/400 (58%), Gaps = 7/400 (1%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 L+G L D + H++++ L R+ II +VK S L+GRGGAGF TG+KW F + + Sbjct: 8 LKGDRLDD-VDNYHFNSIKNALTMSREEIIQKVKDSELKGRGGAGFPTGLKWQFAKDIDN 66 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D YLV N DE EPGT KDR ++ P ++EG +IA++A+GA A+IY+RGE+I + Sbjct: 67 D-NKYLVCNGDEGEPGTFKDRYLLEERPLKVLEGIMIAAYAVGAARAYIYIRGEYINAIK 125 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q +D+ +LG N + +++ + GAGAY+CG+ET+LL S+EGK+G+ R+KP Sbjct: 126 KFQDVIDKAEKKNILGENIFSSDFSLELRLVRGAGAYVCGDETSLLNSIEGKRGRSRIKP 185 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+P GL+ PT VNNVES+ I + +S G E +RGTKL S+SG VN P Sbjct: 186 PYPIQKGLFDNPTVVNNVESLCCAAEIFNEDSVEFSELGVEGSRGTKLISLSGDVNAPGL 245 Query: 254 VEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E + +T +++I K G+RG + L +IPGG S + A + Y +++G Sbjct: 246 YEIEFAKVTLNDIIYKLGQGMRGS-ETLSFIIPGGVSTALIKAEDLE-LPYTYQTFEKLG 303 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S LG+ AVI ++ S D++ + +S FY E+CG C PCREG + R+++R K + Sbjct: 304 SSLGSGAVIAVNESHDLLDLMLNVSRFYMDETCGTCFPCREGNRQINRILKR-YKDNESE 362 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +L+ ++ I+ C LG ++ I +I N+ Sbjct: 363 LDFELINDIGNTIKLAARCGLGQSSLSFISSVINNYSSKF 402 >gi|251770991|gb|EES51575.1| NADH dehydrogenase (quinone) [Leptospirillum ferrodiazotrophum] Length = 475 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 156/414 (37%), Positives = 228/414 (55%), Gaps = 6/414 (1%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGM 64 DR+ TN SL+ G + + ++L +I E+K SGLRGRGG+GF T + Sbjct: 32 DRVLTNPAIFGDPSLASYERGGGYKGLRRVLSGLSPSDVIAEIKESGLRGRGGSGFPTAL 91 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW + Y+V N E EPG+ KD ++ PH ++EG +IA FA+ A ++ Sbjct: 92 KWEKVA-NHRVPVRYVVANGSEGEPGSHKDHYLISRSPHQILEGMIIACFAVSAKSGHLF 150 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 V+ F L+ A +E A+GLLG+N G+ VDI + G AYI GEETALLE+LE Sbjct: 151 VKESFPEGINILRKAREEALAAGLLGNNILGSGFSVDIEIFVGPAAYIAGEETALLEALE 210 Query: 184 GKKGQPRLKPPFP-ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 G+ +PR KPPF +GLY PT VNNVE+ A V IL G + G + GT +F Sbjct: 211 GRVPRPRPKPPFYPTEMGLYNKPTVVNNVETYAHVSRILAEGTVKFRERGTPKSPGTMIF 270 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SG V P VE + + + L+ + GG + GG S LPA ++ Sbjct: 271 SVSGSVRRPVVVELPLGFSLERLLYDYAGG-PLPGETFQCFFTGGPSFGILPAREI-DTP 328 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 ++YD L+ G+GLG+A +IV+ I+ S FY+ SCGQC PCR GT + + + Sbjct: 329 LEYDALRAKGTGLGSAGIIVLGSKDSILATTAAFSEFYEKGSCGQCPPCRLGTESLHQTL 388 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 E L+ G + I+ L +V+K I+GR C L A+A+ ++ L+++F PL+ E + Sbjct: 389 EGLMNGQNSEDGIERLLKVTKMIKGRGNCGLITASAFMVESLLEHFTPLLREEL 442 >gi|118474520|ref|YP_891366.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp. fetus 82-40] gi|261885722|ref|ZP_06009761.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413746|gb|ABK82166.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp. fetus 82-40] Length = 406 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 177/406 (43%), Positives = 242/406 (59%), Gaps = 12/406 (2%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 G + + + G + N++ IL+ R+ I+ V SGLRG+GG G S G KW M SD Sbjct: 12 NGYKIDVAKANGAYLNLENILKMDRNSIVEAVDKSGLRGKGGGGGSCGTKWKNMLAWESD 71 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 YLVVN DESEPGTCKD+ I+ +PH LIEG +I+S+A+GA A++Y+RGE+ RE + Sbjct: 72 -KRYLVVNGDESEPGTCKDKYILNLDPHLLIEGIIISSYALGAKRAYVYIRGEYEREFIT 130 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L A+ E + LG D++IIV+ GAGAYICGE+TALLES+EGK+G PRLKP Sbjct: 131 LTNAIKEA--ANELG-------DLEIIVYKGAGAYICGEKTALLESIEGKRGHPRLKPHN 181 Query: 196 PANVG-LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 A L+GC VNNVE+IA +P I++ G Y G E + GT LF++SG VN PC Sbjct: 182 KAEPDFLFGCACVVNNVETIASIPFIVKNGWEAYRSVGTEKSPGTLLFAVSGCVNTPCVK 241 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + I GG+ + L AVIPGGSS L ++ A +DY+ LKE S Sbjct: 242 EMPFGTKMIDFINDFGGGVWKNRE-LKAVIPGGSSAAVLTKDEVLKATLDYESLKEFKSA 300 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT ++V D + + + + L FY ESCGQCTPCREG GW +RV++++V+G R+ Sbjct: 301 LGTGGMMVFDDTISMPEVLLNLLEFYTEESCGQCTPCREGCGWALRVVKKIVEGEGSLRD 360 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 +D L ++S ++G+TIC A I G I F + Sbjct: 361 LDTLKDISYMLDGKTICVFAPAVKDVIMGFITKFENEFVALCKETK 406 >gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] Length = 570 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 140/398 (35%), Positives = 214/398 (53%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ ++ G ++ + K+ G + + + +GLRG GGAGF +G KW F+ Sbjct: 191 DYEAFDAYVAGGGYEALKKLRRDGDWEDVQQNLLDAGLRGLGGAGFPSGKKWGFVRDNAG 250 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 P Y+ VN DE EPGT KDR + PH +EG +IA++A+ A F+Y+R E+ + Sbjct: 251 --PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAEKVFLYMRDEYPQVLA 308 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + A+G++ + I + GAGAYICGEE+A++ES+EGK+G PR +PP Sbjct: 309 LLRTEIAALEAAGIVPAGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 361 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 + A VG++G PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 362 YVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGLRSYSVSGRVAKPGMY 421 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E T ++IE G A PGG S LPA M +D+D L+ GS Sbjct: 422 ELPAGSTITDVIEAAGGM--ANGHRFKAYQPGGPSSGLLPAA-MDDIPLDFDTLQPHGSF 478 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A + + Sbjct: 479 IGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADRWD 532 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S + +IC LG AA PI+ +IK+F + Sbjct: 533 KPLLEELSTAMVDASICGLGQAAPNPIRLVIKHFADEV 570 >gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] Length = 562 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 143/398 (35%), Positives = 218/398 (54%), Gaps = 19/398 (4%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ + G + + + E G + + +V ++GLRG GGAGF +G KW F+ + Sbjct: 183 DYETYESYAAEGGYAVLQDLRESGDWEAVQEKVLSAGLRGLGGAGFPSGKKWGFVR--AN 240 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + P YL VN DE EPGT KDR + PH +EG +IA++A+ A +FIY+R E+ E Sbjct: 241 EGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERSFIYMRDEYPAVLE 300 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ + +G++ + I + GAGAYICGEE+A++ES+EGK+G+PR +PP Sbjct: 301 ILRREIRALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPP 353 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 F A VG++G PT V+NVE++ + I R G + + +G + +S+SG V P Sbjct: 354 FVAQVGIFGRPTLVHNVETLYWIAKINREGPECLNAVEKNGRKGLRSYSVSGRVQNPGVH 413 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 T ++IE G + A PGG S LPA M +D+D L+ GS Sbjct: 414 LLPAGSTILDVIEAAGGMLE--GHLFKAYQPGGPSSGLLPA-HMNDIPLDFDTLQPHGSF 470 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A+K + Sbjct: 471 IGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAEKWD 524 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S+ + +IC LG AA PI+ +K+F I Sbjct: 525 QSLLEELSQTMVDASICGLGQAAPNPIRLTMKHFPEEI 562 >gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] Length = 571 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 158/407 (38%), Positives = 230/407 (56%), Gaps = 24/407 (5%) Query: 13 YGLQGK-----SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65 + + L+ S G + + E + + E++ +GLRG GGAGF T K Sbjct: 173 GQIHPEEIKWQRLAGYCSTGGYGLLTDCHEGRVSVESLAKELEHAGLRGLGGAGFPTYRK 232 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W + P Y V+NADE EPGT KDR + EPH +EG +++++A+ A +IY+ Sbjct: 233 WQAVRAEPG--PRYAVINADEGEPGTFKDRYFLEREPHVFLEGALVSAWAVEAQALYIYL 290 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 R E+ L+ AV E A+G++ +I+ GAGAYICGEE+AL+ESLEGK Sbjct: 291 RDEYPGLHGVLKNAVAELEAAGIVEPGF-------VILRRGAGAYICGEESALIESLEGK 343 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 G+PR +PPF A GL+G PT VNNVE++ +P I +GA W++ GR +G + FS+S Sbjct: 344 PGKPRHRPPFVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWFASQGRHGRKGLRSFSVS 403 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P IT ELI+++CGG+ LLA +PGG+S LPA + +D+ Sbjct: 404 GRVATPGVHLAPAGITLSELIDEYCGGMA-EGHRLLAYLPGGASGGILPASK-ADIPLDF 461 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L+E G +G+AAVIV+ D+ A L F+ ESCGQCTPCR GT M+ ++ER Sbjct: 462 DTLQEHGCFIGSAAVIVLSDQDDLQAAASNLLGFFADESCGQCTPCRVGTEKMLTLLER- 520 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + D L +++ + +IC LG AA P+ L+++FR + Sbjct: 521 -----STWDEDTLKQLAGVMADASICGLGQAAPNPVLSLLRDFRSEL 562 >gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] Length = 566 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 142/396 (35%), Positives = 215/396 (54%), Gaps = 19/396 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ + G + + + G + + +VK +GLRG GGAGF +G KW F+ ++ Sbjct: 189 ETFAAYEGEGGYATLKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 246 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL VN DE EPGT KDR + PH +EG ++A++A+ A AFIY+R E+ + L Sbjct: 247 ARYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLKIL 306 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + A+G++ I + GAGAYICGEE+A++ES+EGK+G+PR +PPF Sbjct: 307 ATEIKALEAAGIVEEGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 359 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG++G PT V+NVE++ V I R G + + +G + +S+SG V P Sbjct: 360 AQVGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLL 419 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T ++IE CGG+ A PGG S LPA M +D+D L+ G+ +G Sbjct: 420 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MNDVPLDFDTLQPHGTFIG 476 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+V+ A + F++ ESCGQCTPCR G +++M +K + Sbjct: 477 SAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SEKKWDQG 530 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+S + +IC LG AA PI+ +K+F + Sbjct: 531 LLEELSTAMVDASICGLGQAAPNPIRLTMKHFPDEV 566 >gi|119944968|ref|YP_942648.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37] gi|119863572|gb|ABM03049.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37] Length = 588 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 194/390 (49%), Gaps = 15/390 (3%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + K L + E+ SGLRG GGAGF T KW D Y+V NADE EP Sbjct: 187 EAIKKALATAPHDSLAEIDKSGLRGCGGAGFKTAEKWKSCLLSD-DNQRYVVCNADEGEP 245 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ LIEG + ++ IGA FIY+R E+ + L + A+ LL Sbjct: 246 GTFKDRVLLNSYADLLIEGMTLCAYVIGAQKGFIYLRYEYQHLYKKLLETLQRRRAANLL 305 Query: 150 GSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 G++ DI + GAG+Y+CGEE+ALLESLEG++ PR++PPFP G PT V Sbjct: 306 GAHILNSELSFDIEIFMGAGSYVCGEESALLESLEGRRAIPRIRPPFPVTHGYLDKPTVV 365 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 NNVE+ I+ +GA +S G G K+ SISG V E + + ++ Sbjct: 366 NNVETFCYAALIIEKGAENFSAQGLAGFTGCKILSISGDVEKTGIYEIPLGLPVKNVLNL 425 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 ++ AV GG S + + I +D L GS + V ++S D Sbjct: 426 CGA------QSVQAVQVGGPSGTLITPAEFSRVI-SFDDLHTGGSFM------VFNQSRD 472 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 I++ + F+ ESCG CTPCR GT + + +++ G + ++D + +++ + G Sbjct: 473 ILENALNFTHFFMQESCGFCTPCRVGTKLIYDLADKVATGQGARLDLDSIKQLNHVMNGM 532 Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + C LG AA P+ ++ F +R+ Sbjct: 533 SHCGLGQRAAEPLLETLEKFPEYFVKRMTD 562 >gi|39937320|ref|NP_949596.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009] gi|39651178|emb|CAE29701.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris CGA009] Length = 428 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 161/416 (38%), Positives = 230/416 (55%), Gaps = 12/416 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--- 70 Q SL+ G + + L++ + II V+A+GLRGRGGAGF T KW FM Sbjct: 14 RQPHSLAAWRGLGGYAALSLALKRHSPEAIIAMVEAAGLRGRGGAGFPTANKWRFMRTGS 73 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + YL VN DE+EPG+ KDR +M PH LIEG IA++AIGA I VR E+ Sbjct: 74 ERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYAIGATEVIILVRDEYR 133 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 +L A+ E A+GLLG + G+D+ + VH AG YI GEETAL+ ++EG++ P Sbjct: 134 AAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGEETALIAAIEGERPVP 193 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY + GTKL+ ISG V Sbjct: 194 RHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFTDEGGTKLYGISGCVE 253 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P +E M T EL+ + G LLA PGG + ++ +D+ K Sbjct: 254 RPQLIEAPMGSTARELLHRAGG--IRNGRGLLAFQPGGGATAFFEKAEL-DVPLDFTSTK 310 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + GS LGT A+IV+D + AI R FY ESCG CTPCR+G W+ ++++ L G Sbjct: 311 KAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLDALEAGK 370 Query: 370 AQKREIDLLYEVSKN--IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + +I++L++ GR+ C L A P++ ++ F + + + C Sbjct: 371 GTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERFGDIFTAHLQGF--CP 424 >gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] Length = 570 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 140/405 (34%), Positives = 218/405 (53%), Gaps = 19/405 (4%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWS 67 +T+++ ++ ++ G ++ + K+ G + + + +GLRG GGAGF +G KW Sbjct: 184 YTHVHVPDYEAFDAYVAGGGYEALKKLRRDGDWEDVQQNLLDAGLRGLGGAGFPSGKKWG 243 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F+ P Y+ VN DE EPGT KDR + PH +EG +IA++A+ A F+Y+R Sbjct: 244 FVRDNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAEKVFLYMRD 301 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 E+ + L+ + A+ ++ + I + GAGAYICGEE+A++ES+EGK+G Sbjct: 302 EYPQVLALLRTEIAALEAACIVPAGY-------IDLRRGAGAYICGEESAMIESIEGKRG 354 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 PR +PP+ A VG++G PT V+NVE++ V I R G + + +G + +S+SG Sbjct: 355 LPRHRPPYVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGLRSYSVSGR 414 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P E T ++IE G A PGG S LPA M +D+D Sbjct: 415 VAKPGMYELPAGSTITDVIEAAGGM--ADGHRFKAYQPGGPSSGLLPAA-MDDIPLDFDT 471 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 L+ GS +G+AAV+V+ A + F++ ESCGQCTPCR G +++M Sbjct: 472 LQPHGSFIGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM----- 526 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 A + + LL E+S + +IC LG AA PI+ +IK+F + Sbjct: 527 -QADRWDKPLLEELSTAMVDASICGLGQAAPNPIRLVIKHFADEV 570 >gi|89902039|ref|YP_524510.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118] gi|89346776|gb|ABD70979.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118] Length = 591 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 147/406 (36%), Positives = 219/406 (53%), Gaps = 19/406 (4%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 FT Y + SL R + ++ E+ + ++ ++ +GLRG GGAGF G KW Sbjct: 202 FTAHYAINLISLEAYRQRAGYALAAAVVNGEEPAEGVMAALEDAGLRGLGGAGFPAGRKW 261 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + + + P + VN DE EPGT KDR + +PH +EG +IA+ G +IY+R Sbjct: 262 RIVREQSA--PRVMAVNIDEGEPGTFKDRSYLERDPHRFLEGMLIAAQVAGTEACYIYLR 319 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ R+ L ++ A I + GAGAYICGEE+A++ES+EGK+ Sbjct: 320 DEYHDARKMLTQEIEALQADPPCPLPY-------IELRRGAGAYICGEESAMIESIEGKR 372 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 GQPRL+PP+ A +GL+G PT V+N E++ V I+ +G W+S FGR +G + FS+SG Sbjct: 373 GQPRLRPPYVAQLGLFGKPTLVHNFETLYWVRDIVEKGPQWFSSFGRHGRQGLRSFSVSG 432 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + P IT ELI+++CGG+ L A +PGG+S LPA + +D+D Sbjct: 433 RIKLPGVKLAPAGITVQELIDEYCGGM-LDGHTLYAYLPGGASGGILPAS-LNHIPLDFD 490 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 L+ G +G+AAVIV+ + A F+ ESCGQCTPCR GT +R+ME Sbjct: 491 TLQPYGCFIGSAAVIVLSQFDRARDAALSAMRFFAAESCGQCTPCRVGTAKAVRLMEA-- 548 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L +++ + +IC LG AA P++ + K F I Sbjct: 549 ----PVWDNATLEDLNAVMAEASICGLGQAAPNPVRCVQKYFPQEI 590 >gi|254456591|ref|ZP_05070020.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083593|gb|EDZ61019.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 551 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 132/412 (32%), Positives = 206/412 (50%), Gaps = 8/412 (1%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 Q++ F+ + + D S D ++K L+ + II + S L GRGGAGF Sbjct: 137 KQEKFFSKSFATTSFLMDDKFSSTDQFKDQLNKFLKVDKKEIIKSLLDSNLTGRGGAGFP 196 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKW F K D Y++ NADE + G DR ++ +P +I G VI IG+ Sbjct: 197 TGMKWDFCSKAKGD-KKYVLCNADEGDSGAFSDRYLLEDQPLKVIFGMVICGLVIGSDEG 255 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +Y+RGE+ + E++ ++E LLG N + D+ + G GAYICGEETAL+ Sbjct: 256 VLYIRGEYPKSIEAINGCINELKKLNLLGENILGTDFSFDLGICIGQGAYICGEETALIA 315 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EG++ + ++PPFP GLY PT VNNVE++A IL G+ +S G + + GTK Sbjct: 316 SIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGSEKFSAIGNKKSAGTK 375 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L + N P E M + ++ E+ GG + + + A GG +P ++ Sbjct: 376 LVCLDSFFNNPGVYEIDMGTSMKKIFEEIGGGYK---EAVKAFQIGGPLGGVVPLAEIDN 432 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 +D+ G LG A+V+ + + + + I L F ESCG+C P R G+ Sbjct: 433 LNLDFQEFTAKGFMLGHASVVSIPKDFSMSEYIHHLFEFSAEESCGKCFPGRLGSYRGKE 492 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++ K K + LL E+ ++ +CAL A PI ++K F + Sbjct: 493 MFDQ-AKKKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 543 >gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] Length = 580 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 142/392 (36%), Positives = 216/392 (55%), Gaps = 19/392 (4%) Query: 22 DSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + G ++ + + G + + V ++GLRG GGAGF +G KW F+ ++ P YL Sbjct: 207 EYAIAGGYEVLKNLRAHGDWEAVQETVLSAGLRGLGGAGFPSGKKWGFVR--ANEGPRYL 264 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 VN DE EPGT KDR + PH +EG +IA++A+ A AFIY+R E+ E L+ + Sbjct: 265 AVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEILRREI 324 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 +G++ + I + GAGAYICGEE+A++ES+EGK+G+PR +PPF A VG Sbjct: 325 RALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQVG 377 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 ++G PT V+NVE++ + I R G + + +G + +S+SG V P Sbjct: 378 IFGRPTLVHNVETLYWIAKINREGPECLNTVEKNGRKGLRSYSVSGRVKNPGVHLLPAGS 437 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 T ++IE G + + A PGG S LPA M +D+D L+ GS +G+AAV Sbjct: 438 TILDVIEAAGGML--DGHSFKAYQPGGPSSGLLPA-HMNDIPLDFDTLQPHGSFIGSAAV 494 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 +V+ A + F++ ESCGQCTPCR G +++M A+K + LL E Sbjct: 495 VVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAEKWDQSLLEE 548 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +S+ + +IC LG AA PI+ +K+F + Sbjct: 549 LSQTMVDASICGLGQAAPNPIRLTMKHFPEEV 580 >gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196] gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Nitrosospira multiformis ATCC 25196] Length = 598 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 128/389 (32%), Positives = 203/389 (52%), Gaps = 16/389 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + L +G D + E+K S LRGRGGAG++T KW+ Y+V NADE EP Sbjct: 192 SAIRATLMRGADATLGELKLSRLRGRGGAGYATADKWTACRDSE-GTARYIVCNADEGEP 250 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ + EG + + +G+ F+Y+RGE+ + L+ + + LL Sbjct: 251 GTFKDRVLLNRYADMVFEGMTVGARLLGSTKGFLYLRGEYQYLLKKLEEVLARRCEARLL 310 Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G++ + G+D DI +H GAGAYICGEE+AL+ESLEG++G+PR +PP+PA G PT Sbjct: 311 GTDILGEPGFDFDIEIHLGAGAYICGEESALIESLEGRRGKPRNRPPYPAQHGYLDQPTV 370 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE+ A I G W+ G + G+K+ SI+G P E ++ E+++ Sbjct: 371 VNNVETFACSAMIAVHGGKWFGETGTWESSGSKILSIAGDCTLPGIYEYPFGVSVREILQ 430 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + AV GG S + + +I +D L G A + R Sbjct: 431 D------CAAEEAYAVQVGGPSGILVSWKEFERSI-SFDDLPTAG------AFTIFGRGR 477 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 DI++A+ + F+ HESCG CTPCR GT ++++++ G +++ L + + Sbjct: 478 DILEAVRNYAHFFAHESCGFCTPCRVGTQLQKKLVDKIADGHGTASDLEELKHLGHLMRT 537 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416 + C LG A P+ +++ F E+++ Sbjct: 538 MSHCGLGHTAPNPVLDMLEKFPGAYEQKL 566 >gi|241760010|ref|ZP_04758108.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114] gi|241319464|gb|EER55894.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114] Length = 413 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 134/398 (33%), Positives = 199/398 (50%), Gaps = 9/398 (2%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75 G L+ G + + L I+++++ + L G GGAGF T KW + Sbjct: 16 GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWHKWEAAVAAQSKH 74 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA+E EPGT KDR ++ PH +IEG +IA+ A A+ A +Y + Sbjct: 75 GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMY----QTESIAA 130 Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+++ S L + LG +D+ + +G YI GEETA++ LEG PR KPP Sbjct: 131 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 190 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 FPA G+ G PT +NN E+ A +P IL +GA WY G + GTKL+S+SG V P Sbjct: 191 FPAESGVAGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 250 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E M T LI H GG+ AV GG S L A + +D+ ++E S Sbjct: 251 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 308 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 LGT A+IV+ T +++ + F+ SCGQC PC+ GT + R++ R+ GI + Sbjct: 309 LGTGAMIVISEGTSVVRKVAEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 368 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + L + + + C L D A +Q ++ F Sbjct: 369 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 406 >gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana) tropicalis] Length = 1458 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 169/374 (45%), Positives = 214/374 (57%), Gaps = 25/374 (6%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGAGFS 61 I+ L G SL D +RG + + KIL +D +I VK SGLRGRGGAGF Sbjct: 29 IYAGLNGRN-WSLKDYEARGGYAALRKILGADGGAGMTQDQVIATVKESGLRGRGGAGFP 87 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFMP+ +LV N+DE EPGTCKDRDI+ + PH +IEG +I ++A+G Sbjct: 88 TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIGAYAMGISLG 146 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 + Y+ GE + E +AA++E A+G LG + + HHG GAYICGEETALLE Sbjct: 147 YNYIHGEIFQAYERFEAALEEARAAGYLGDQILGSHFSFQLHAHHGFGAYICGEETALLE 206 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G Y G+ NN GTK Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECGKPNNGGTK 266 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +FS+SG V P E + F +L+E G L AVIPGGSS P LPA M Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFTKLLELAGG--VRKGRQLKAVIPGGSSSPVLPAHIMMD 324 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDI--------------IKAIWRLSVFYKHESCG 346 MDYD + + GS LG+ A+IVMD S D+ KA + F H+ Sbjct: 325 CTMDYDAISKAGSMLGSGALIVMDDSRDMKVEVGEGSMVIHAAEKANVYIPHFCYHKKLS 384 Query: 347 QCTPCREGTGWMMR 360 CR + + Sbjct: 385 VAASCRMCLVDVEK 398 >gi|169334685|ref|ZP_02861878.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM 17244] gi|169257423|gb|EDS71389.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM 17244] Length = 416 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 123/412 (29%), Positives = 212/412 (51%), Gaps = 5/412 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 I + G ++ + + RG + + K + +G + + +V SGL+GRGGA + TG K + Sbjct: 7 ITKDYGTYDGFNIDEYIKRGGFKGLKKSILQGYEKTVKDVSDSGLQGRGGANYPTGRKLT 66 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + + Y++ NADE EPGT KD+ ++++ + +IEG +I++F GA+ +IYVR Sbjct: 67 QAREAKGNGDRYILCNADEGEPGTFKDKYLLQNGIYKVIEGIIISAFCAGANKGYIYVRE 126 Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E+ + ++ A+ + Y G LG + G+D D+ + G G+Y+CGE A+ ES+EGK Sbjct: 127 EYTFMHKDIEFAIKQVYDKGFLGEDILSSGFDFDLSLFSGGGSYVCGEGFAMCESIEGKS 186 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 G+PR KPP+ GL+ PT V NVE+++V+ T+++ G +G E+ GTK+ +SG Sbjct: 187 GRPRSKPPYVKECGLHNKPTLVINVETVSVIATMMQNGFKTVLKYGVEDCPGTKMVCVSG 246 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V +P E T G G V GG+S +P ++ Y Sbjct: 247 KVKHPGVYEVEFGTTVQN--IIKIAGGIKGGKKAKFVQIGGASGVIVPYEKL-NIPYTYS 303 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 G+K++ +G+ A++V D +I + + F+ HE CG+C PCREG + ++M+R Sbjct: 304 GMKKVKGNIGSGAIVVADEDDSVIDYLSVVEDFFFHECCGKCVPCREGNRQLKKIMDRFK 363 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 ++ + + ++C G A P NF + + + Sbjct: 364 IKQGTLTDLKNYVRIVNAL-DASLCGSGKAQIIPFISAYTNFSQEFKNALKR 414 >gi|192293100|ref|YP_001993705.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] gi|192286849|gb|ACF03230.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1] Length = 428 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 160/416 (38%), Positives = 230/416 (55%), Gaps = 12/416 (2%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--- 70 Q SL+ G + + L++ + II V+A+GLRGRGGAGF T KW FM Sbjct: 14 RQPHSLAAWRGLGGYAALSLALKRHSPEAIIAMVEAAGLRGRGGAGFPTANKWRFMRTGS 73 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + YL VN DE+EPG+ KDR +M PH LIEG IA++AIGA I VR E+ Sbjct: 74 ERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYAIGATEVIILVRDEYR 133 Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 +L A+ E A+GLLG + G+D+ + VH AG YI GEETAL+ ++EG++ P Sbjct: 134 AAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGEETALIAAIEGERPVP 193 Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 R +PP+PA GL+G PTTVNNVE+++ VP+I+ GA WY + GTKL+ ISG V Sbjct: 194 RHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFTDEGGTKLYGISGCVE 253 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P +E + T EL+ + G LLA PGG + ++ +D+ K Sbjct: 254 RPQLIEAPIGSTARELLHRAGG--IRNGRGLLAFQPGGGATAFFEKAEL-DVPLDFTSTK 310 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + GS LGT A+IV+D + AI R FY ESCG CTPCR+G W+ ++++ L G Sbjct: 311 KAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLDALEAGK 370 Query: 370 AQKREIDLLYEVSKN--IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + +I++L++ GR+ C L A P++ ++ F + + + C Sbjct: 371 GTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERFGDIFTAHLQGF--CP 424 >gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] Length = 574 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 145/404 (35%), Positives = 216/404 (53%), Gaps = 19/404 (4%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSF 68 T+ + Q ++ G + + ++ E G + + + +GLRG GGAGF +G KW F Sbjct: 189 THAHVPQYETYDAYAKAGGYQVLARLREGGDFETVQQDLLDAGLRGLGGAGFPSGRKWGF 248 Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 + P YL VN DE EPGT KDR + +PH +EG +IA++A+ A FIY+R E Sbjct: 249 VRAEKG--PRYLAVNGDEGEPGTFKDRFYLERQPHVFLEGMLIAAWAVEAETCFIYMRDE 306 Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + E L+ + +G++ I + GAGAYICGEE+A++ES+EGK+G Sbjct: 307 YPAVLEILRREIAALETAGVVAPGY-------IDLRRGAGAYICGEESAMIESIEGKRGL 359 Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248 PR +PPF A VG++ PT VNNVE++ V +LR G S R +G + +S+SG V Sbjct: 360 PRHRPPFVAQVGIFDRPTLVNNVETLYWVTRVLREGKEILSDVERNGRKGLRSYSVSGRV 419 Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308 N P T ++IE G + + A PGG S LPA M +D+D L Sbjct: 420 NKPGVHLLPAGSTITDIIEAAGGMLE--GHSFKAYQPGGPSSGLLPAS-MNDIPLDFDTL 476 Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368 + G+ +G+AAV+V+ A + F++ ESCGQCTPCR G +++M Sbjct: 477 QPHGTFIGSAAVVVLSDKDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 530 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 A + + LL E+ + + +IC LG AA PI+ +K+F I Sbjct: 531 QADRWDQPLLEELCQAMGDASICGLGQAAPNPIRLTMKHFPDEI 574 >gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 561 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 139/396 (35%), Positives = 213/396 (53%), Gaps = 19/396 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + + + G + ++ ++ G + ++V +GLRG GGAGF +G KW F+ ++ Sbjct: 184 EDFAAYEAAGGYTSLKELRANGDWAQVQDKVLDAGLRGLGGAGFPSGKKWGFVR--ANEG 241 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ L Sbjct: 242 TRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEADTCFIYMRDEYPAVLHIL 301 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + + +G++ I + GAGAYICGEE+A++ES+EGK+G PR +PPF Sbjct: 302 AEEIAKLENAGIVEKGF-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFV 354 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A VG++ PT V+NVE++ V I+R G S + +G + +SISG VN P Sbjct: 355 AQVGIFNKPTLVHNVETLLWVTRIVREGPEVLSSIEKNGRKGLRSYSISGRVNDPGVHLL 414 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 T +LI+ G + + A PGG S LPA + MD+D L+ +G+ +G Sbjct: 415 PAGSTIMDLIDAAGGMLE--GHSFKAYQPGGPSAGLLPAS-INDVPMDFDTLQPLGTFIG 471 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +AAV+++ A + F++ ESCGQCTPCR G +++M A K + Sbjct: 472 SAAVVILSDKDSARGAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADKWDQP 525 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 LL E+ + +IC LG AA PI+ +K+F + Sbjct: 526 LLEELCSAMGDASICGLGQAAPNPIRMTMKHFADEV 561 >gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400] gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Burkholderia xenovorans LB400] Length = 610 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 144/382 (37%), Positives = 204/382 (53%), Gaps = 16/382 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 +G + +E+ S LRGRGGAGF TGMKW HY+V NADE EPGT KDR + Sbjct: 208 RGVPALFDEMNRSNLRGRGGAGFVTGMKWRLCRDAP-GTEHYIVCNADEGEPGTFKDRVL 266 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KL 155 + P ++EG I + AIGA +Y+RGE+ E L + + LLG++ Sbjct: 267 LTRHPDMVVEGMTIGALAIGARRGMLYLRGEYRYLLEPLLDVLQRRREAHLLGASILGHA 326 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA G PT V+NVE++ Sbjct: 327 GFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLQQPTVVDNVETLC 386 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + +G +W+S G + GT L S+SG P E + + D ++E Sbjct: 387 AATHVALQGGAWWSAIGTPKSTGTSLHSVSGDCERPGIYEYPLGTSVDRILEDCGA---- 442 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + AV GG S CL A + I D A +V DRS D+ + Sbjct: 443 --RDTQAVQVGGPSGKCLSAIEFGHRIAFED-------VPSAGAFMVFDRSRDMFEVARN 493 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 + F+ ESCG CTPCR GT +++ M++L G + +++LL ++ + G T C LG Sbjct: 494 YAGFFAEESCGFCTPCRVGTALVVKSMDKLAAGRGSRHDVELLSDIDILMHGTTHCGLGG 553 Query: 396 AAAWPIQGLIKNFRPLIEERID 417 +A + I FRP E R+ Sbjct: 554 SACNALHDTIVKFRPAYERRLK 575 >gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 572 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 146/394 (37%), Positives = 215/394 (54%), Gaps = 23/394 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ E + ++ + L+G GGAGF TG KW + P Sbjct: 191 DAYRAAGGYRTLERLRAGELTVEAVLAILDDGALKGLGGAGFPTGRKWRSVRGEPG--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KD+ + +PH +EG +I + + A ++Y+R E+ R L Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAAEIYLYIRDEYPIARAILAR 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G I + GAGAYICGEE++++ESLEGK+G PR KPPFP Sbjct: 309 ELAKLPPGGP-----------RIHLRRGAGAYICGEESSMIESLEGKRGLPRHKPPFPFQ 357 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +NNVE++ V ++ +GA+W+ GR G + +S+SG V P Sbjct: 358 VGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGLRSYSVSGRVAAPGVKLAPA 417 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELI++ CGG+ G A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 418 GLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIGSA 475 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+V+ D+ A L F++ ESCGQCTPCR GT R+ME+ V + DLL Sbjct: 476 AVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKARRLMEQGV------WDTDLL 529 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 E+S+ + +IC LG AAA P+ LIK F L Sbjct: 530 GELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 563 >gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] Length = 588 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 134/396 (33%), Positives = 212/396 (53%), Gaps = 16/396 (4%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + + ++ E+ SGLRGRGGAGF TGMKW F + D HY++ NADE EP Sbjct: 182 SALSAAINMEPEALLAEITKSGLRGRGGAGFGTGMKWKFCREAKGD-AHYVICNADEGEP 240 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR ++ H + EG + + IGA ++Y+R E+ L A + +GLL Sbjct: 241 GTFKDRILLTSHAHAVFEGMTLCGYVIGAQKGYLYLRAEYRYLLPELYAVLSRRQQAGLL 300 Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G+ + G+D DI + GAGAYICGEE++L+ES+E K+G PR++PPFP G G PT Sbjct: 301 GAGILGQTGFDFDIDIIVGAGAYICGEESSLIESMEQKRGIPRVRPPFPVTSGFLGQPTV 360 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 VNNVE++A I G+ W++ G + + GTK+ S+SG P E ++ ++++ Sbjct: 361 VNNVETLAAAAQIAIHGSEWFNTQGSDKSDGTKILSVSGDCTTPGIYEYPFGVSIQKILD 420 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 +N+ A+ GG S + + + ++ L GS + + Sbjct: 421 DCGA------ENVQAIQVGGPSGTLIGPDE-FERKLGFEDLATGGSFM------IFGAER 467 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 D++ I + F+ HESCG CTPCR GT + ++++V G + ++D +Y ++ ++ Sbjct: 468 DLLAVISNFAHFFAHESCGFCTPCRVGTSLLKNGLDKIVSGHGTRYDMDEMYRMATLVKR 527 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 R+ C LG AA P+ ++ F L EER+ Sbjct: 528 RSHCGLGQTAANPVLDALQRFPKLFEERLLHSEYAP 563 >gi|19112649|ref|NP_595857.1| iron sulfur cluster assembly protein (predicted) [Schizosaccharomyces pombe 972h-] gi|74582910|sp|O94500|NDUV1_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial; AltName: Full=Complex I-51kD; Short=CI-51kD; Flags: Precursor gi|4107329|emb|CAA22670.1| iron sulfur cluster assembly protein (predicted) [Schizosaccharomyces pombe] Length = 452 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 149/417 (35%), Positives = 236/417 (56%), Gaps = 9/417 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 R+F NL + + + D+++ G ++N+ +IL+ II V+ S LRGRG GF TG K Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92 Query: 67 SFMPKVCS-----DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 + K S ++VNA E++ G+ KDR ++RHEPH +IEG +IA+ A+ A Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 ++++R ++ E +Q + + YA LLG N +++++H GAG+YI GEE+AL++ Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQ 212 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 SL+G+ P + GL+G PT V NVE+++ +P I+++G ++ GR NNRGTK Sbjct: 213 SLQGEFPVPDIPINNTITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFISMGRPNNRGTK 272 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSISG VN P +E MSI +LIE + GG+RGGW+ L+ + PGG L Q Sbjct: 273 LFSISGEVNEPNVIEACMSIPLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQ 332 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 MD+D LK + S LGT +VIV++ I +++ + FY +C C CR+G ++ Sbjct: 333 VTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIE 392 Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRT--ICALGDAAAWPIQGLIKNFRPLIEER 415 ++ L G A ++ ++ N+ + C GD+ I + +NF I R Sbjct: 393 TLKGLKDGHAHLSQLKDMFS-KFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448 >gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 567 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 146/394 (37%), Positives = 215/394 (54%), Gaps = 23/394 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ E + ++ + L+G GGAGF TG KW + P Sbjct: 186 DAYRAAGGYRTLERLRAGELTVEAVLAILDDGALKGLGGAGFPTGRKWRSVRGEPG--PR 243 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KD+ + +PH +EG +I + + A ++Y+R E+ R L Sbjct: 244 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAAEIYLYIRDEYPIARAILAR 303 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G I + GAGAYICGEE++++ESLEGK+G PR KPPFP Sbjct: 304 ELAKLPPGGP-----------RIHLRRGAGAYICGEESSMIESLEGKRGLPRHKPPFPFQ 352 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+G PT +NNVE++ V ++ +GA+W+ GR G + +S+SG V P Sbjct: 353 VGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGLRSYSVSGRVAAPGVKLAPA 412 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELI++ CGG+ G A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 413 GLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIGSA 470 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+V+ D+ A L F++ ESCGQCTPCR GT R+ME+ V + DLL Sbjct: 471 AVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKARRLMEQGV------WDTDLL 524 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 E+S+ + +IC LG AAA P+ LIK F L Sbjct: 525 GELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 558 >gi|91975810|ref|YP_568469.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] gi|91682266|gb|ABE38568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5] Length = 428 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 161/385 (41%), Positives = 220/385 (57%), Gaps = 9/385 (2%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRPHYLVVNADESEPGTCKDR 95 + +I V+A+GLRGRGGAGF T KW FM YL VN DE+EPG+ KDR Sbjct: 39 SPEAVIAMVEAAGLRGRGGAGFPTANKWRFMRAGADKAGPGARYLCVNGDETEPGSFKDR 98 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-K 154 +M PH LIEG IA++A GA I VR E+ +L A+ E +G LG + Sbjct: 99 LLMEALPHQLIEGATIAAYATGATEVIILVRDEYRAAAAALTRAITEAEQAGWLGRDILG 158 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 G+D+ + VH AG YI GEETAL+ +LEG++ PR +PP+PA GL+G PTTVNNVE++ Sbjct: 159 SGFDLTMRVHTSAGRYIVGEETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETL 218 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 + VP+I+ GA WY G R + GTKL+ +SG V P +E M T ELIE CGGIR Sbjct: 219 SAVPSIVENGADWYRGLSRSDEGGTKLYGVSGCVARPQLIEAPMGTTGRELIE-ICGGIR 277 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 L A PGG + L ++ +D+ K+ GS LGT A+IV+D + AI Sbjct: 278 -NGRALFAFQPGGGATAFLETAEL-DVPLDFTHTKKAGSSLGTGALIVLDDRACPVAAIG 335 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE--GRTICA 392 R FY ESCG CTPCR+G W+ ++++ L G K ++DLL+ + GR+ C Sbjct: 336 RHMRFYARESCGLCTPCRDGLPWVAKLLDTLEAGRGAKADLDLLHSHVQLSAPSGRSYCD 395 Query: 393 LGDAAAWPIQGLIKNFRPLIEERID 417 L A P++ ++ F + + Sbjct: 396 LNTGALTPLKSGLERFGDIFTAHLQ 420 >gi|297493964|gb|ADI40704.1| NADH dehydrogenase flavoprotein 1, 51kDa [Cynopterus sphinx] gi|297493966|gb|ADI40705.1| NADH dehydrogenase flavoprotein 1, 51kDa [Rousettus leschenaultii] Length = 275 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 171/261 (65%), Positives = 205/261 (78%), Gaps = 1/261 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVKASGLRGRGGAGF Sbjct: 15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKASGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 75 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVLRGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 254 Query: 241 LFSISGHVNYPCTVEESMSIT 261 LF+ISGHVN+PCTVEE MS+ Sbjct: 255 LFNISGHVNHPCTVEEEMSVP 275 >gi|297493960|gb|ADI40702.1| NADH dehydrogenase flavoprotein 1, 51kDa [Scotophilus kuhlii] Length = 275 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 168/261 (64%), Positives = 204/261 (78%), Gaps = 1/261 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 75 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++ FGRE N GTK Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFASFGRERNSGTK 254 Query: 241 LFSISGHVNYPCTVEESMSIT 261 LF+ISGHVN+PCTVEE MS+ Sbjct: 255 LFNISGHVNHPCTVEEEMSVP 275 >gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 559 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 149/405 (36%), Positives = 222/405 (54%), Gaps = 17/405 (4%) Query: 10 TNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 T + +L+D ++ G + + KI + D +I ++++GLRG GGAGF G KW Sbjct: 168 TTVRVPDYTNLADYLAAGGYKLLSKIRDGSLAVDTLIETMQSAGLRGLGGAGFPAGKKWG 227 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 F+ P + +N DE EPGT KDR + +PH +EG +IA+ A+ A + Y+R Sbjct: 228 FVRSYPG--PRLMTINGDEGEPGTFKDRYHLERDPHRTLEGALIAAHAVEAERIYFYMRD 285 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 E+ L+ + A GL+ I + GAGAYICGEE+A+LES+EGK+G Sbjct: 286 EYPAVLHILRTEIAALEAGGLITPGF-------IELRRGAGAYICGEESAMLESIEGKRG 338 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 PR +PP+ A VGL+G PT +NVE++ + I+ G W++G G+ G + +S+SG Sbjct: 339 LPRHRPPYIAEVGLFGRPTLNHNVETLWWIRDIVDNGPEWFTGLGKPGFPGLRSWSVSGR 398 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V P +T ELI++HCGG+ G A +PGG+S LPA + Sbjct: 399 VREPGVKLAPAGVTVRELIDEHCGGMAAG-HAFKAYLPGGASGGVLPAALGDIPLDFGGE 457 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 L G+ +G+ AV+V DI +A L F++HESCGQCTPCREGTG ++ ++E + Sbjct: 458 LARQGAFVGSHAVVVFSDKDDIREATLNLLRFFEHESCGQCTPCREGTGKLVSLLE--SR 515 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 G + I L V + +IC LG AA P+ L+ +FR + Sbjct: 516 GPIDETAIRDLETV---LRDASICGLGQAAPNPVNHLLTHFREEL 557 >gi|295112908|emb|CBL31545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Enterococcus sp. 7L76] Length = 363 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 135/364 (37%), Positives = 205/364 (56%), Gaps = 6/364 (1%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +++ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYICGE + Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 ALL S+EGK G+PR+KPP A+VGLY PT VNNVES A VP ILR G + G + Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL +SGH+ E ++ +E+I + GG +L + GG S P Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 +R + Y+ L +G+ A++VMD S +++ + ++ F+ HESCG+CTPCR GT Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359 Query: 356 GWMM 359 ++ Sbjct: 360 TRIL 363 >gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] Length = 569 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 136/402 (33%), Positives = 217/402 (53%), Gaps = 19/402 (4%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 ++ + + + G ++ + + G + + +++ +GLRG GGAGF +G KW F+ Sbjct: 186 VHVPDYEDFAAYSNDGGYETLKTLRATGDWEAVQDQLLEAGLRGLGGAGFPSGKKWGFVR 245 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 P Y+ VN DE EPGT KDR + PH +EG +IA++A+ A F+Y+R E+ Sbjct: 246 GNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHHFLEGMLIAAWAVEADKVFLYMRDEYP 303 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 + L+ + A+G++ I + GAGAYICGEE+A++ES+EGK+G PR Sbjct: 304 QVLALLRTEIAALEAAGIVEPGY-------IDLRRGAGAYICGEESAMIESIEGKRGMPR 356 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 +PP+ A VG++G PT V+NVE++ V + R G + + + +G + +S+SG V Sbjct: 357 HRPPYVAQVGIFGRPTLVHNVETLHWVARVCREGPEVLNSTVKNDRKGLRSYSVSGRVAN 416 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P T ++I+ G A PGG S LPA M +MD+D L+ Sbjct: 417 PGMYLLPAGSTITDIIDAAGGM--ADGHVFKAYQPGGPSSGLLPAS-MADVVMDFDTLQP 473 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 GS +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A Sbjct: 474 HGSFIGSAAVVVLSEHDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QA 527 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + + LL E+S+ + +IC LG AA PI+ ++K+F + Sbjct: 528 DRWDKPLLEELSQAMVDASICGLGQAAPNPIRLVMKHFPDEV 569 >gi|324521898|gb|ADY47951.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum] Length = 323 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 173/269 (64%), Positives = 205/269 (76%), Gaps = 1/269 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L+D DRIFTNLYG L +++RG W +I+ KG+DWII E+ ASGLRGRGGAGF Sbjct: 46 LSDDDRIFTNLYGRHDYRLKGALARGDWYKTKEIILKGQDWIIKEISASGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKW FM + RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA A+GA A Sbjct: 106 SGMKWGFMKRPYDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGVAMGARAA 165 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180 +IY RGEF E LQ A+ E Y +G LG + GY D+ VH GAGAYICGEETALLE Sbjct: 166 YIYARGEFYNEACILQEAIHEAYKAGYLGKDCCGTGYSFDVFVHRGAGAYICGEETALLE 225 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGAWFASFGRERNHGTK 285 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269 LF ISGHV PCTVEE MSI +LIE+H Sbjct: 286 LFCISGHVVNPCTVEEEMSIPLKDLIERH 314 >gi|124487823|gb|ABN11995.1| putative NADH dehydrogenase (ubiquinone) flavoprotein 1 [Maconellicoccus hirsutus] Length = 266 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 174/258 (67%), Positives = 207/258 (80%) Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223 H GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV+NVE++AV PTI RR Sbjct: 2 HRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLFGCPTTVSNVETVAVSPTICRR 61 Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283 G W+ FGR N GTKLF+ISGHVN PCTVEE MSI ELIE+H GG+ GGWDNLLAV Sbjct: 62 GGDWFVSFGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLAV 121 Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 IPGGSS P +P +MD+DGL + LGTAAVIVM++ TD++KAI RL +FYKHE Sbjct: 122 IPGGSSTPLIPKKVCEDVMMDFDGLVAAQTSLGTAAVIVMNKQTDVVKAIARLIMFYKHE 181 Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403 SCGQCTPCREG WM ++M R V G Q EID+L+E+SK IEG TICALGD AAWP+QG Sbjct: 182 SCGQCTPCREGINWMNKMMYRFVDGNGQTPEIDMLWELSKQIEGHTICALGDGAAWPVQG 241 Query: 404 LIKNFRPLIEERIDQYHR 421 LI++FRP IE RI ++ + Sbjct: 242 LIRHFRPEIERRISEFQK 259 >gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] Length = 561 Score = 345 bits (885), Expect = 9e-93, Method: Composition-based stats. Identities = 139/391 (35%), Positives = 208/391 (53%), Gaps = 19/391 (4%) Query: 23 SMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 + G + ++++ E G + + V A+GLRG GGAGF +G KW F+ P YL Sbjct: 189 YRAAGGYSALERLREGGDWEAVQETVLAAGLRGLGGAGFPSGRKWGFVRANPG--PRYLA 246 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 VN DE EPGT KDR + PH +EG +IA++A+ A F+Y+R E+ E L+ + Sbjct: 247 VNGDEGEPGTFKDRHYLERTPHLFLEGMLIAAWAVEAERVFLYMRDEYPAVLEILRRELA 306 Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 A+GL+ + + GAGAYICGEE+A++ES+EG +G PR +PP+ A VG+ Sbjct: 307 ALEAAGLIAPGY-------VELRRGAGAYICGEESAMIESIEGNRGIPRHRPPYVAQVGV 359 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 +G PT V+N+E++ V I R G S + +G + +S+SG V P T Sbjct: 360 FGRPTLVHNIETLHWVARICREGPEVLSATEKNGRKGLRSYSVSGRVAEPGVYLLPAGST 419 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ++I+ G A PGG S LPA M +D+D L+ GS +G+AAV+ Sbjct: 420 IRDVIDAAGGM--AEGHVFKAYQPGGPSSGLLPA-HMDDIPLDFDTLQPHGSFIGSAAVV 476 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 V+ A + F++ ESCGQCTPCR G +++M A+ + LL ++ Sbjct: 477 VLSDQDRARDAALNMLRFFEAESCGQCTPCRVGCEKAVKLM------QAESWDRALLEDL 530 Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + +IC LG AA PI+ +K+F I Sbjct: 531 CDVLADASICGLGQAAPNPIRLTMKHFGDEI 561 >gi|23016780|ref|ZP_00056532.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 514 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 144/391 (36%), Positives = 216/391 (55%), Gaps = 25/391 (6%) Query: 22 DSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 D++ + + + E RD ++ E++ +GLRG GGAGF T KW + P Sbjct: 144 DAILHEDYPVLARCRSGELPRDEVLAELERAGLRGMGGAGFPTARKWRAVAARPG--PRL 201 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 +VVNADE EPGT KDR ++ ++EG +IA++A+ A ++Y+R E+ + L Sbjct: 202 VVVNADEGEPGTFKDRWFLQTNAARVLEGALIAAWAVEADEVYLYLRDEYADLHKLLTVL 261 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + L V + + GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A V Sbjct: 262 IRA------------LPGSVPVHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEV 309 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+G PT VNNVE++ V IL GA ++ GR +RG + +S+SG V P Sbjct: 310 GLFGRPTVVNNVETLYWVSRILAEGAELFTDEGRNGHRGLRTYSVSGRVRLPGVKIAPNG 369 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 IT ELIE+ CGG+ L A +PGG+S LPA + + ++E G +G+AA Sbjct: 370 ITITELIEEFCGGME-DGHQLRAYLPGGASGGFLPAHV--TPPLAFGAIEEHGGFIGSAA 426 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 V+V + D+ L+ F+ HESCGQCTPCR GT ++ + + + DLL Sbjct: 427 VVVFSQEDDLRAHALNLARFFAHESCGQCTPCRVGTAKAADLLA------SPRWDEDLLN 480 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 ++++ + +IC LG AA Q L+++F Sbjct: 481 DLAQVMRDASICGLGQAAPNVWQSLLRHFPE 511 >gi|94313226|ref|YP_586435.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus metallidurans CH34] gi|93357078|gb|ABF11166.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus metallidurans CH34] Length = 414 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 137/408 (33%), Positives = 210/408 (51%), Gaps = 5/408 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + G L ++ G + + K L +I E++ + LRG GGAGF+T KW+ Sbjct: 7 VLLRDDVRVGADLEAWLAIGGGEGLAKAL-CDPGAVIGEIEQADLRGMGGAGFATHRKWA 65 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + +D ++ N +E EPGT KDR ++ H PH +IEG +IA+ A A+ +YV Sbjct: 66 PVA-AAADGDKTIICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAAATRANHIVLYVNP 124 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + ++ AV + A +L G + + V +G YI GEETA++ S+EG Sbjct: 125 HQQQAIAVIRQAVGQWQAHPRYAELERLLGAPLSLGVVPSSGLYIGGEETAVIASVEGGF 184 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 PR KPPFP+ G++G P+ VNNVE++A +P ILR GA WY G N GTKL+S+SG Sbjct: 185 PFPRRKPPFPSQQGVHGAPSIVNNVETLAHIPGILRHGAQWYRDLGIGNATGTKLYSLSG 244 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E M + + L+ +H GG+ AV GG S L + +D+D Sbjct: 245 DVLRPGLYELPMGTSLESLVFEHGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFD 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 ++ S LGT A+IV+ T I++ + F+ SCGQC PC+ G+ +MR++ R+ Sbjct: 303 SVRLRRSRLGTGAMIVVSEGTSIVRKVAEFVSFFAQGSCGQCPPCKGGSFQLMRLLNRID 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 G ++ L + + + G C L D A ++ + FR E Sbjct: 363 TGRGVHADLAALENLCRILPGSGRCGLIDGAVTVVESSLHQFREEYEA 410 >gi|154247855|ref|YP_001418813.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] gi|154161940|gb|ABS69156.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2] Length = 422 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 146/375 (38%), Positives = 198/375 (52%), Gaps = 4/375 (1%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 D II +K + LRG GGAGF T KWS D Y+V N +E EPGT KDR ++R Sbjct: 44 PDAIIETLKDADLRGMGGAGFPTWRKWSAAAASPCD-EKYVVCNGNEDEPGTFKDRHLLR 102 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYD 158 PH +IEG +IA+ A+ A+ YV + ++ AVDE AS LL S SK+ G Sbjct: 103 WTPHQVIEGALIAAVAVKANRVVFYVNPHQAEGIDQMRWAVDEWTASDLLASVSKVVGRP 162 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 V + V +G YI GEETA++ L+G PR KPPFP G+ G PT +NN E++A VP Sbjct: 163 VTLTVAPSSGRYIGGEETAIVSWLDGGFPFPRRKPPFPFESGVGGLPTLINNTETLANVP 222 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 IL+ GA WY G GTKLFS+SG V P E M + +EL+ H GG+ Sbjct: 223 HILKNGADWYRDLGVGAAAGTKLFSLSGDVLNPGLYELPMGTSLEELVFVHGGGM-LDGR 281 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 AV GG S L A + +D+D +K S LGT A+IV+ T I++ + Sbjct: 282 AFKAVFTGGPSNTLLTARDL-DVALDFDSVKRRKSRLGTGAMIVISEGTSIVRKVAEYVA 340 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ SCGQC C+ GT M R+++R+ G + + L + + + G CAL D A Sbjct: 341 FFASGSCGQCPSCKCGTFQMARLLDRIATGRGVEADRQALDHLCRILPGSGRCALIDGAV 400 Query: 399 WPIQGLIKNFRPLIE 413 ++ F E Sbjct: 401 TVVESSRHTFPDEYE 415 >gi|297493962|gb|ADI40703.1| NADH dehydrogenase flavoprotein 1, 51kDa [Miniopterus schreibersii] Length = 275 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 169/261 (64%), Positives = 205/261 (78%), Gaps = 1/261 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 15 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 75 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+E Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVLRGAGAYICGEETALIE 194 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++GFGRE N GTK Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFAGFGRERNSGTK 254 Query: 241 LFSISGHVNYPCTVEESMSIT 261 LF+ISGHVN+PCTVEE MS+ Sbjct: 255 LFNISGHVNHPCTVEEEMSVP 275 >gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] Length = 572 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 23/396 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ E D ++ + GLRG GGAGF TG KW + P Sbjct: 191 DAYRAGGGYATLERLRSGELSVDDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KD+ + +PH +EG +I + + A +IY+R E+ RE L Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAAEVYIYLRDEYPISREILAR 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G I + GAGAYICGEE++L+ESLEGK+G PR KPPFP Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+ PT +NN+E++ V ++ RGA W+ GR G + +S+SG V P Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELI+++CGGI + A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 418 GLTIQELIDEYCGGI-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+++ D+ A L F++ ESCGQCTPCR GT +ME V + DLL Sbjct: 476 AVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKARMLMENGV------WDTDLL 529 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 530 GELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565 >gi|296531991|ref|ZP_06894774.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957] gi|296267683|gb|EFH13525.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957] Length = 412 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 142/397 (35%), Positives = 206/397 (51%), Gaps = 5/397 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G L+ ++ G + + L R II ++ SGLRG GGAGF T KW + + + Sbjct: 16 GADLAAWLAVGGGEGLAAALA-DRAGIIPLLERSGLRGMGGAGFPTWRKWQAVAQQPAG- 73 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+V N +E EPGT KDR ++R PH +IEG +IA+ A+ A +Y+ Sbjct: 74 GKYVVCNGNEDEPGTFKDRHLLRWTPHAVIEGGLIAALAVDASHLVLYINPHEAEAVAEA 133 Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV + LLG+ + LG+ V + V +G YI GEETA++ LEG PR KPPF Sbjct: 134 RRAVAQWRGHALLGAVEEALGHAVALTVVESSGRYIGGEETAVISWLEGSFPFPRRKPPF 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 PA G+ G PT +NN E++A +P I GA WY G G GTKL+S+SG V P E Sbjct: 194 PAEQGVGGAPTLINNTETLANIPYIFAHGAEWYRGLGVGEAVGTKLYSLSGDVMRPGLYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + ELI H GG+ G D AV GG S L + +D+D ++ S L Sbjct: 254 LPMGTSLQELIFTHGGGMLEGRD-FKAVFTGGPSNTLLTKRDL-DVALDFDSVRARQSRL 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IV+ T I++ F+ SCGQC PC+ GT + R+++R+ G ++ Sbjct: 312 GTGAMIVISEGTSIVRKTAEYIAFFAAGSCGQCPPCKAGTFQLARLLDRIEGGRGTAEDL 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L+ + + + G C L D A ++ ++ F Sbjct: 372 RALHSLCRILPGSGRCGLIDGAVTVVESSLQTFPQEY 408 >gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium extorquens PA1] gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta [Methylobacterium extorquens DM4] gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium extorquens PA1] gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens DM4] Length = 572 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 23/396 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ E D ++ + GLRG GGAGF TG KW + P Sbjct: 191 DAYRAGGGYATLERLRSGELPVDDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KD+ + +PH +EG +I + + A +IY+R E+ RE L Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAAEVYIYLRDEYPISREILAR 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G I + GAGAYICGEE++L+ESLEGK+G PR KPPFP Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+ PT +NN+E++ V ++ RGA W+ GR G + +S+SG V P Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELI+++CGGI + A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 418 GLTIQELIDEYCGGI-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+++ D+ A L F++ ESCGQCTPCR GT +ME V + DLL Sbjct: 476 AVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKARMLMENGV------WDTDLL 529 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 530 GELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565 >gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens] gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] Length = 572 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 23/396 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ E D ++ + GLRG GGAGF TG KW + P Sbjct: 191 DAYRAGGGYATLERLRSGELPVDDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KD+ + +PH +EG +I + + A +IY+R E+ RE L Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAADVYIYLRDEYPISREILAR 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G I + GAGAYICGEE++L+ESLEGK+G PR KPPFP Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+ PT +NN+E++ V ++ RGA W+ GR G + +S+SG V P Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELI+++CGGI + A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 418 GLTIQELIDEYCGGI-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+++ D+ A L F++ ESCGQCTPCR GT +ME V + DLL Sbjct: 476 AVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKARMLMENGV------WDTDLL 529 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 530 GELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565 >gi|83309268|ref|YP_419532.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] gi|82944109|dbj|BAE48973.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 467 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 143/381 (37%), Positives = 211/381 (55%), Gaps = 25/381 (6%) Query: 32 VDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 +D+ L E RD + E++ +GLRG GGAGF T KW + P +VVNADE EP Sbjct: 107 LDRCLSGELPRDEALTELERAGLRGMGGAGFPTARKWRSVAAQPG--PRLVVVNADEGEP 164 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 GT KDR + + ++EG +IA++A+ A ++Y+R E+ + L + + Sbjct: 165 GTFKDRWFLENHAAQVLEGALIAAWAVEADEVYLYLRDEYADLHKGLATLIRD------- 217 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 L D+ I + GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A VGL+G PT VN Sbjct: 218 -----LPGDITIHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLFGRPTLVN 272 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE++ V +L GA + GR + G + +S+SG V P IT ELI++ Sbjct: 273 NVETLYWVSRLLAEGAELFGNEGRNGHHGLRTYSVSGRVKEPGVKIAPNGITVSELIDEF 332 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 CGG+ L A +PGG+S LPA + + ++E G +G+AAV+V ++ D+ Sbjct: 333 CGGME-DGHVLAAYLPGGASGGFLPAR--LQPPLAFGAIEEHGGFIGSAAVVVFSQADDL 389 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 L+ F+ HESCGQCTPCR GT + ++ + DLL +++ + + Sbjct: 390 RAVALNLARFFAHESCGQCTPCRVGTAKSVGLLA------GPAWDRDLLDDLAGVMRDAS 443 Query: 390 ICALGDAAAWPIQGLIKNFRP 410 IC LG AA Q L ++F Sbjct: 444 ICGLGQAAPNVWQSLFRHFPE 464 >gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] Length = 572 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 215/396 (54%), Gaps = 23/396 (5%) Query: 21 SDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + ++++ G + ++ + GLRG GGAGF TG KW + P Sbjct: 191 DAYRAGGGYVTLERLRSGGLAVEDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KD+ + +PH +EG +I + + A +IY+R E+ RE L Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEATDVYIYLRDEYPISREILTR 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G I + GAGAYICGEE++L+ESLEGK+G PR KPPFP Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+ PT +NN+E++ V ++ RGA W+ GR G + +S+SG V P Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGADWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELI+++CGG+ + A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 418 GLTIQELIDEYCGGM-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+V+ D+ A L F++ ESCGQCTPCR GT +ME V + +LL Sbjct: 476 AVVVLSDQDDVRGAALNLMRFFEDESCGQCTPCRSGTQKARMLMENGV------WDTELL 529 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 E+++ + +IC LG AA+ P+ +IK F L E Sbjct: 530 GELAQCMRDASICGLGQAASNPVSSVIKYFPDLFPE 565 >gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72] gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72] Length = 602 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 140/382 (36%), Positives = 205/382 (53%), Gaps = 16/382 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 GR ++E++ S LRGRGGAGF+T +KW+ + + +V NADE EPGT KDR + Sbjct: 196 MGRSGWLDEMQRSNLRGRGGAGFTTAVKWTAC-RDAAGPQKVVVCNADEGEPGTFKDRLL 254 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KL 155 + + EG +A++A GA +Y+RGE+ ++L A + + A+GLLG N + Sbjct: 255 LTRMADAVFEGMTLAAWATGAQLGLLYLRGEYRYLLDALNATLTQRRAAGLLGRNILGEA 314 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G+D DI +H GAGAYICGEETALLESLEGK+G PR++PPFP G G PT VNNVE++A Sbjct: 315 GFDFDIAIHLGAGAYICGEETALLESLEGKRGTPRIRPPFPVTHGYLGRPTVVNNVETLA 374 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 I G + ++ G + GTKL SISG P E +T + ++E Sbjct: 375 KTCLIACGGGAAFAATGTAQSTGTKLLSISGDCAAPGIYEYPFGVTVERVLEDCGA---- 430 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + AV GG++ L A + + I D A +V D D+ + Sbjct: 431 --SDTQAVQVGGAAGITLAAYEFQRRIAFED-------VPTAGAFMVFDSGRDLFEVARN 481 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 F+ HESCG CTPCR GTG + M++ G + ++ + + + ++ + C LG Sbjct: 482 FVAFFAHESCGFCTPCRVGTGLLKAAMDKFASGHGSRGDLADIEWIDRLLKNASHCGLGA 541 Query: 396 AAAWPIQGLIKNFRPLIEERID 417 +A P+ + FR E R+ Sbjct: 542 SAPNPVLDTLLKFRSFYERRMQ 563 >gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium radiotolerans JCM 2831] Length = 572 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 145/396 (36%), Positives = 214/396 (54%), Gaps = 23/396 (5%) Query: 21 SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 + G + +D++ + D I+ + GLRG GGAGF TG KW + P Sbjct: 191 DAYRAAGGYATLDRLRSGDLPVDDILKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 + VN DE EPGT KD+ + +PH +EG +I + + A +IY+R E+ RE L Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAPEVYIYLRDEYPISREILTR 308 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + + G I + GAGAYICGEE++L+ESLEGK+G PR KPPFP Sbjct: 309 EIAKLPEGGP-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258 VGL+ PT +NN+E++ V ++ RG W+ GR + G + +S+SG V P Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGGDWWKSHGRNDRVGLRSYSVSGRVKEPGVKLAPA 417 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +T ELI+++CGG+ A +PGG+S LPA M +D+ L++ G +G+A Sbjct: 418 GLTIQELIDEYCGGMA-DGHTFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378 AV+++ D+ A L F++ ESCGQCTPCR GT +ME+ V + +LL Sbjct: 476 AVVILSDRDDVRGAALNLMRFFEDESCGQCTPCRSGTQKARILMEQGV------WDTELL 529 Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 E+S+ + +IC LG AA+ P+ +IK F L Sbjct: 530 GELSQCMRDASICGLGQAASNPLSSVIKYFPDLFPA 565 >gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 567 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 141/393 (35%), Positives = 205/393 (52%), Gaps = 29/393 (7%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + G W+ V + V A+GLRG GGAGF +G KW F+ P Y Sbjct: 204 LKGLRAGGDWEAVQ-----------DSVLAAGLRGLGGAGFPSGRKWGFVRANPG--PRY 250 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L VN DE EPGT KDR + PH +EG +IA++A+ A +IY+R E+ E L+ Sbjct: 251 LAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRRE 310 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + A+G++ I + GAGAYICGEE+A++ES+EGK+G PR +PPF A V Sbjct: 311 IAALEAAGIVAKGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQV 363 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+G PT V+N+E++ V + R G + + +G + +S+SG V P Sbjct: 364 GLFGRPTLVHNIETLHWVARVCREGPEVLNSIEKNGRKGLRSYSVSGRVARPGVHLLPAG 423 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 T ++I A PGG S LPA M +D+D L+ GS +G+AA Sbjct: 424 STIRDVIAAAG--GMAAGHVFKAYQPGGPSSGLLPAS-MDDIPLDFDTLQPHGSFIGSAA 480 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 V+V+ + A + F++ ESCGQCTPCR G +++M A+ + LL Sbjct: 481 VVVLSQQDSARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QAEHWDQPLLE 534 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 E+ + + +IC LG AA PI+ +K+F I Sbjct: 535 ELCQVMADASICGLGQAAPNPIRLTMKHFAEEI 567 >gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] Length = 568 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 141/400 (35%), Positives = 206/400 (51%), Gaps = 23/400 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEK-----GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 ++L + G + + + + + + +GLRG GGAGF +G KW F+ Sbjct: 187 EALDAYRTAGGYATLADLRATRNADAEFERVQQTLLDAGLRGLGGAGFPSGRKWGFVRAE 246 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 P YL VN DE EPGT KDR + PH +EG +IA++A+ A FIY+R E+ Sbjct: 247 PG--PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERCFIYMRDEYPAV 304 Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 + L + A+ L+ K GY + + GAGAYICGEE+A++ES+EGK+G PR + Sbjct: 305 LDILATEIAALEAADLI----KPGY---VELRRGAGAYICGEESAMIESIEGKRGLPRHR 357 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPF A VG++ PT VNNVE++ V ILR G + +G + +S+SG V P Sbjct: 358 PPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNTVELNGRKGLRSYSVSGRVKNPG 417 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 T ++I G + A PGG S LPA M +D+D L+ G Sbjct: 418 VHLLPAGSTITDIIAAAGGML--DGHTFKAYQPGGPSSGLLPAS-MHDVPLDFDTLQPHG 474 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A Sbjct: 475 TFIGSAAVVVLSDHDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADT 528 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + LL E+ + +IC LG AA PI+ +K+F I Sbjct: 529 WDQPLLTELCTAMSDASICGLGQAAPNPIRLTMKHFADEI 568 >gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] Length = 568 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 139/400 (34%), Positives = 205/400 (51%), Gaps = 23/400 (5%) Query: 18 KSLSDSMSRGHWDNVDKILE-----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 + + G + + + + + + +GLRG GGAGF +G KW F+ Sbjct: 187 EGFEAYRAAGGYATLADLRAVANADAEFERVQQTLLDAGLRGLGGAGFPSGRKWGFVRAE 246 Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132 P YL VN DE EPGT KDR + +PH +EG +IA++A+ A FIY+R E+ Sbjct: 247 AG--PRYLAVNGDEGEPGTFKDRYYLERQPHLFLEGMLIAAWAVAAERCFIYMRDEYPAV 304 Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 E L + + A+GL+ + + + GAGAYICGEE+A++ES+EG +G PR + Sbjct: 305 LEILASEIAALEAAGLIAAGY-------VELRRGAGAYICGEESAMIESIEGNRGLPRHR 357 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 PPF A VG++ PT VNNVE++ V ILR G + +G + +S+SG V P Sbjct: 358 PPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNSVEHNGRKGLRSYSVSGRVKNPG 417 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 T ++I G + + A PGG S LPA M +D+D L+ G Sbjct: 418 VHLLPAGSTITDIIAAAGGMLE--GHSFKAYQPGGPSSGLLPAS-MNDIPLDFDTLQPHG 474 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 S +G+AAV+V+ A + F++ ESCGQCTPCR G +++M A Sbjct: 475 SFIGSAAVVVLSDHDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADT 528 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + LL E+ + +IC LG AA PI+ +K+F I Sbjct: 529 WDQPLLAELCTAMSDASICGLGQAAPNPIRLTMKHFADEI 568 >gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 560 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 141/393 (35%), Positives = 205/393 (52%), Gaps = 29/393 (7%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L + G W+ V + V A+GLRG GGAGF +G KW F+ P Y Sbjct: 197 LKGLRAGGDWEAVQ-----------DSVLAAGLRGLGGAGFPSGRKWGFVRANPG--PRY 243 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L VN DE EPGT KDR + PH +EG +IA++A+ A +IY+R E+ E L+ Sbjct: 244 LAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRRE 303 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + A+G++ I + GAGAYICGEE+A++ES+EGK+G PR +PPF A V Sbjct: 304 IAALEAAGIVAKGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQV 356 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 GL+G PT V+N+E++ V + R G + + +G + +S+SG V P Sbjct: 357 GLFGRPTLVHNIETLHWVARVCREGPEVLNSVEKNGRKGLRSYSVSGRVARPGVHLLPAG 416 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 T ++I A PGG S LPA M +D+D L+ GS +G+AA Sbjct: 417 STIRDVIAAAG--GMAAGHVFKAYQPGGPSSGLLPAS-MDDIPLDFDTLQPHGSFIGSAA 473 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 V+V+ + A + F++ ESCGQCTPCR G +++M A+ + LL Sbjct: 474 VVVLSQQDSARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QAEHWDQPLLE 527 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 E+ + + +IC LG AA PI+ +K+F I Sbjct: 528 ELCQVMADASICGLGQAAPNPIRLTMKHFAEEI 560 >gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mesorhizobium sp. BNC1] gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chelativorans sp. BNC1] Length = 557 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 141/395 (35%), Positives = 215/395 (54%), Gaps = 17/395 (4%) Query: 20 LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L G + + KI E+ D +I + +GLRG GGAGF G KW + P Sbjct: 178 LDAYRGAGGYQLLQKIRERAVTIDAVIAMLGDAGLRGLGGAGFPAGKKWQIVRSYPG--P 235 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 + +N DE EPGT KDR + +PH EG +IA++A+ A + Y+R E+ L+ Sbjct: 236 RLMSINGDEGEPGTFKDRIYLERDPHRTFEGALIAAYAVEAERIYFYMRDEYPAVLAILR 295 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A + A+G++ I + GAGAYICGEE+A+LES+EG++G PR +PP+ A Sbjct: 296 AEIAALEAAGIVAPGF-------IELRRGAGAYICGEESAMLESIEGRRGMPRHRPPYIA 348 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 VGL+G PT +NVE++ + I+ +G W++G G+ + G + +S+SG V P Sbjct: 349 EVGLFGRPTLNHNVETLWWIRDIVEKGPDWFAGLGKPGHPGVRSWSVSGRVKEPGVKLAP 408 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 +T LIE +CGG+ G + A +PGG+S LPA + L + GS +G+ Sbjct: 409 AGVTARGLIEDYCGGMADGHE-FKAYLPGGASGGILPAALGDIPLDFGGELAKQGSFVGS 467 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AV+V ++ ++ L F+KHESCG+CTPCREGT M+ +++ G ++ I Sbjct: 468 HAVVVFSQADNLKDVTLNLMNFFKHESCGKCTPCREGTEKMVTLLK--EPGPLRETAIRD 525 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L V + +IC LG AA P+ L+ +F + Sbjct: 526 LETV---MRDSSICGLGQAAPNPVNHLLTHFWDDL 557 >gi|258591892|emb|CBE68197.1| Putative NADH dehydrogenase; similar to formate dehydrogenase, beta subunit (fdhB1) [NC10 bacterium 'Dutch sediment'] Length = 472 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 128/388 (32%), Positives = 203/388 (52%), Gaps = 13/388 (3%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + + + L+ + ++ EV+ S LRGRGGAGF TG KW + + + ++VVNADE Sbjct: 94 DYGALRRALDLTSEEVLREVERSELRGRGGAGFPTGRKWRAVAQQEA-HEKFVVVNADEG 152 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 +PG DR I+ +PH L+EG IA++A+GA IY+R E+ +LQ AV E Sbjct: 153 DPGAYIDRVILERDPHLLLEGVRIAAYAVGARRGVIYLRKEYPEALPALQRAVQEAGRVW 212 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + + + G G+Y+CGEETALL S+EGK+ + R +PP+P GLY PT Sbjct: 213 --------PGEFAVEIVVGQGSYVCGEETALLNSIEGKRPEVRTRPPYPTARGLYQRPTL 264 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 +NNVE++A +P I++ GA+ Y G +RGTKL S++ P E IT E++E Sbjct: 265 INNVETLAAIPWIIQEGAAAYRNLGFSQSRGTKLLSLNSLFRKPGLYEVEFGITLREVVE 324 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG+ G L +I GG +P + + ++ L+E+G+G+G V+ D T Sbjct: 325 GLGGGLCSGP--LKGLIVGGPLAGVIPPE-LLDTRLGFEELREIGAGVGHGGVVAFDDRT 381 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI-AQKREIDLLYEVSKNIE 386 I++ + F +ESCG+CTPCR G+ + +V + + + + Sbjct: 382 SILELAHHVFSFGAYESCGKCTPCRLGSPRVEQVFALARQAETPSQGAYREFGAIVAALH 441 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEE 414 ++C G A ++ +R +E Sbjct: 442 QASLCGHGTGLAAFAMSAMRYYRKELEA 469 >gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina] Length = 610 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 130/396 (32%), Positives = 201/396 (50%), Gaps = 17/396 (4%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 + V ++L+ G + + EV+ SGLRGRGGAGF+T +KW F + Y+V NA Sbjct: 193 ATDG-AAVRRLLDAGAEAALAEVERSGLRGRGGAGFTTALKWRFCREAP-GTDRYVVCNA 250 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 DE EPGT KDR ++ +IEG + + IGA F+Y+RGE+ L++ + Sbjct: 251 DEGEPGTFKDRVLLTDYTDLVIEGMTVCAGVIGARRGFLYLRGEYRYLLPHLESVLQRRR 310 Query: 145 ASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 A GLLG+ G+D DI +H GAGAYICGEE+AL+ESLEGK+G R +PPFP G Sbjct: 311 AEGLLGTRILGADGFDFDIEIHLGAGAYICGEESALIESLEGKRGVTRKRPPFPVTSGFD 370 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 PT VNNVE+ +++ G W G G + + G+K+ S+SG P E Sbjct: 371 DQPTVVNNVETFLAAARVVQWGGYWLRGEGTDQSAGSKILSVSGDCARPGIYEYPFGTPV 430 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 +++ +N AV G++ L I+ ++ L GS + + Sbjct: 431 HQVLSDCGA------ENTQAVQISGAAGATLSPAD-FDRIIAFEDLPTAGSFM------I 477 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D S D++ + + F+ HESCG CTPCR G + ++E++ G + ++ + + Sbjct: 478 FDHSRDLLDMVRNFAAFFAHESCGFCTPCRVGGALLRNLVEKVAAGQGSEYDLSEMRRIG 537 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + C LG A + + F + R+ + Sbjct: 538 TVMRRASYCGLGHTAPNHVVNTLDKFPLIYGRRLAR 573 >gi|86748476|ref|YP_484972.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] gi|86571504|gb|ABD06061.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2] Length = 428 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 159/385 (41%), Positives = 219/385 (56%), Gaps = 9/385 (2%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRPHYLVVNADESEPGTCKDR 95 + II ++A+GLRGRGGAGF T KW FM + YL VN DE+EPG+ KDR Sbjct: 39 SPEAIIALIEAAGLRGRGGAGFPTANKWRFMRAGAEKAGPGACYLCVNGDETEPGSFKDR 98 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-K 154 +M P LIEG IA++A+GA I VR E+ +L A+ E +GLLG + Sbjct: 99 LLMEALPQQLIEGATIAAYAMGATEVIILVRDEYRAAAAALSRAIVEAEQTGLLGRDILG 158 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 G+D+ + VH AG YI GEETAL+ +LEG++ PR +PP+PA GL+G PTTVNNVE++ Sbjct: 159 SGFDLTMRVHASAGRYIVGEETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETL 218 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 + VP+I+ GA WY G N GTKL+ +SG V P +E M T EL CGGIR Sbjct: 219 SAVPSIVEHGAEWYQGLSHTNEGGTKLYGVSGCVARPQLIEAPMGTTAREL-FDLCGGIR 277 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 G L A PGG + L ++ +D+ K GS LGT A+IV+D + AI Sbjct: 278 QG-RALFAFQPGGGATAFLETAEL-DVPLDFAHTKRAGSSLGTGALIVLDDHACPVAAIG 335 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN--IEGRTICA 392 R FY ESCG CTPCR+G W+ ++++ + G + +IDLL++ GR+ C Sbjct: 336 RHMRFYARESCGLCTPCRDGLPWVAKLLDTIEAGKGTRGDIDLLHQHVALSGPSGRSYCD 395 Query: 393 LGDAAAWPIQGLIKNFRPLIEERID 417 L A P++ ++ F + + Sbjct: 396 LNTGALTPLRSGLERFGDIFAAHLQ 420 >gi|158421745|ref|YP_001523037.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] gi|158328634|dbj|BAF86119.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 417 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 147/406 (36%), Positives = 207/406 (50%), Gaps = 5/406 (1%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 I N G L + G +D L II ++A+GLRG GGAGF T KW+ Sbjct: 7 ILLNPAIQLGADLDGWFAAGGGLGLDAALA-DPGAIIPALEAAGLRGMGGAGFPTHRKWA 65 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + +V N +E EPGT KDR ++R PH +IEG +IA+ AIGA F+Y+ Sbjct: 66 AAAAAQN-TDRTVVCNGNEDEPGTFKDRHLLRWTPHQVIEGALIAALAIGARRVFLYINP 124 Query: 128 EFIRERESLQAAVDE-CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + I ++ AV + L ++G +++ V +G YI GEETA++ SLEG Sbjct: 125 QQIEALAEMRRAVAQWADTDRLRAVERRIGATLELTVFPTSGRYIGGEETAVISSLEGGF 184 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 PR KPPFPA G G PT +NN E++A VP ILR GA+WY G GTKL+S+SG Sbjct: 185 PFPRRKPPFPAESGYRGTPTLINNTETLANVPHILRHGAAWYRRLGLGEAVGTKLYSLSG 244 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 V P E M +LI H GG+ AV GG S L A + +D+D Sbjct: 245 DVLRPGLYELPMGTPLQDLIFVHGGGM-LEGKAFKAVFTGGPSNTLLTARDL-DVALDFD 302 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 ++ S LGT A+IV+ T I++ + F+ SCGQC PC+ GT M R+++R+ Sbjct: 303 SVRARRSRLGTGAMIVISEGTSIVRKVAEYIDFFAKGSCGQCPPCKAGTFQMARLLDRVD 362 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 G A ++ LY + + + G C L D A ++ + F Sbjct: 363 SGRAVPADLAALYNLCQILPGSGRCGLIDGAVTVVESSLHTFPAEY 408 >gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72] gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp. BH72] Length = 571 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 138/400 (34%), Positives = 206/400 (51%), Gaps = 24/400 (6%) Query: 19 SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + G + + ++ E + ++ + + LRG GGAGF KW + + R Sbjct: 177 DFDAYRADGGYRLYESVVRGEHDAEEVLGVLDTAILRGLGGAGFPAARKWRTVMAQPAPR 236 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 + VN DE EPGT KDR + +PH +EG +IA+ +G +IY+R E+ R L Sbjct: 237 N--MAVNIDEGEPGTFKDRHYLGRDPHRFLEGMLIAARVVGISAIWIYIRDEYPALRRML 294 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A +D+ A+ + + GAGAYICGEE+A++ES+EGK+G PRL+PP+ Sbjct: 295 LAELDKLRAAWPDLP--------PVELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 346 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILR----RGASWYSGFGRENNRGTKLFSISGHVNYPC 252 A VGL+G PT V+N E++ V I+ +GA W G GR RG + FS+SG V P Sbjct: 347 AEVGLFGRPTLVHNPETLWWVRDIVTAGLVQGAQWLEGRGRNGRRGLRSFSVSGRVAKPG 406 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 V IT +L+++HCGG+ L PGG+S LPA + +D+D L G Sbjct: 407 VVVTDAGITLRQLVDEHCGGM-LPGHELYGYFPGGASGGILPAS-LADVPLDFDTLAPYG 464 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 +G+AA++V + F+ HESCGQCTPCR GT +M Sbjct: 465 CFIGSAAIVVFSQHDQARVLAENAMHFFAHESCGQCTPCRVGTAKAADLMAA------PT 518 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + LL E+ + +IC LG AA P++ +++ F + Sbjct: 519 WDAGLLDELGSAMMDASICGLGQAAPNPMRSVLRYFPQEV 558 >gi|240276236|gb|EER39748.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Ajellomyces capsulatus H143] Length = 282 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 176/254 (69%), Positives = 211/254 (83%) Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG W Sbjct: 2 GAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKW 61 Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287 ++ FGRE N+GTKLF ISGHVN PCTVEE MSI ELIE+HCGG+RGGWDNLLAVIPGG Sbjct: 62 FASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGG 121 Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347 SS P LP +MD+D LK+ SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQ Sbjct: 122 SSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQ 181 Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407 CTPCREG+ W M++M+R +G A++REID+L E++K +EG TICALG+A AWPIQGLI++ Sbjct: 182 CTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRH 241 Query: 408 FRPLIEERIDQYHR 421 FRP +E RI +Y + Sbjct: 242 FRPELEARIRKYEQ 255 >gi|134098995|ref|YP_001104656.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] gi|133911618|emb|CAM01731.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] Length = 559 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 204/388 (52%), Gaps = 9/388 (2%) Query: 27 GHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G W + + G ++ EV A+GLRGRGGA + KW + + + P Y+VVN D Sbjct: 174 GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAAKWRAVARGPA--PRYVVVNGD 231 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG+ DR +M +PH ++EG +A FA GAH F++VR E+ + ++ AV E + Sbjct: 232 EGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVFVRSEYPIAVDRMRVAVAEARS 291 Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G G N G+D++I V GAG+Y+ GEETALL +L+G +G R +PP+P ++G G Sbjct: 292 AGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQGLRGAVRPRPPYPTSLGFEGH 351 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVE+IA VP ++R G Y+ G GTKL S+S P E + Sbjct: 352 PTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVSLSERFARPAVYEVEFGTPLRD 411 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++E GG+R + L AV GG L ++ ++ + G LG +++ +D Sbjct: 412 IVEVLGGGLRDDRE-LRAVQVGGPLGGFLAPDELDLPLLADAL-ADAGVALGHGSLVAID 469 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 RS + + L F ESCG CTPCR G+ + + RL + E L EV Sbjct: 470 RSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAYRLAYTDTAETEHQHLLEV--- 526 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++CA G A ++ L++ F Sbjct: 527 MGTGSLCAFGRGVAGSVRSLLRVFSHDF 554 >gi|291006765|ref|ZP_06564738.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] Length = 560 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 204/388 (52%), Gaps = 9/388 (2%) Query: 27 GHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G W + + G ++ EV A+GLRGRGGA + KW + + + P Y+VVN D Sbjct: 175 GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAAKWRAVARGPA--PRYVVVNGD 232 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E +PG+ DR +M +PH ++EG +A FA GAH F++VR E+ + ++ AV E + Sbjct: 233 EGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVFVRSEYPIAVDRMRVAVAEARS 292 Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +G G N G+D++I V GAG+Y+ GEETALL +L+G +G R +PP+P ++G G Sbjct: 293 AGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQGLRGAVRPRPPYPTSLGFEGH 352 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT VNNVE+IA VP ++R G Y+ G GTKL S+S P E + Sbjct: 353 PTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVSLSERFARPAVYEVEFGTPLRD 412 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++E GG+R + L AV GG L ++ ++ + G LG +++ +D Sbjct: 413 IVEVLGGGLRDDRE-LRAVQVGGPLGGFLAPDELDLPLLADAL-ADAGVALGHGSLVAID 470 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 RS + + L F ESCG CTPCR G+ + + RL + E L EV Sbjct: 471 RSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAYRLAYTDTAETEHQHLLEV--- 527 Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLI 412 + ++CA G A ++ L++ F Sbjct: 528 MGTGSLCAFGRGVAGSVRSLLRVFSHDF 555 >gi|187926569|ref|YP_001892914.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|241666079|ref|YP_002984438.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] gi|187728323|gb|ACD29487.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|240868106|gb|ACS65766.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] Length = 525 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 123/397 (30%), Positives = 203/397 (51%), Gaps = 14/397 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + L RG ++K ++N V AS LRGRGGA F G+KW + C++ Sbjct: 140 RDLPTYR-RGG-AALEKARRMAPQALVNMVAASRLRGRGGAAFPAGIKWQAVASACAE-T 196 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+VVNADE +PG DR ++ +P LIE IA+ A+GA +IY+R E+ + Sbjct: 197 KYVVVNADEGDPGAFSDRFLLEEDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMS 256 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ +G LG +++ + G GAYICGEET+LL +LEG++ + R +PP + Sbjct: 257 HALEQARVAGWLGP------TLELELVVGQGAYICGEETSLLNALEGRRPEVRPRPPQIS 310 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT V+NVE++ +P I+ GA+ Y+ G N+RGTKL S++ P E Sbjct: 311 ECGLFGAPTLVHNVETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFRRPGLYEVE 370 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 I+ +++E+ G+R G N L V GG +P + + Y+ ++ + +G Sbjct: 371 FGISLADVVEQLGQGLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQTIDCAVGH 427 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VI T I + + ++ F ESCG+CTPC GT + + + + D Sbjct: 428 GGVIAFADDTSIPRIVAQVLRFGARESCGKCTPCHLGTPILAAMADAAAN--RLPVDADR 485 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + + ++C G A +Q + +++ ++ Sbjct: 486 FRRLIDALAATSLCGHGRGLAEFVQSVRRHYPSELQA 522 >gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] Length = 565 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 207/383 (54%), Gaps = 9/383 (2%) Query: 28 HWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 H+ ++ +L + D +I ++ +GLRG GGAGF TG KW + + Y + NAD Sbjct: 172 HYRSLRALLSGQLSADEVITALQDAGLRGMGGAGFPTGKKWELV-RAAEGAVKYAICNAD 230 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ESEPGT KDR ++ +PH ++EG ++ GA ++++R E+ E L + + Sbjct: 231 ESEPGTFKDRQLLAEQPHLVLEGLLMGMLVTGAEEGWVFIRHEYGPEEAVLHSEIGRLRE 290 Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 GL+G + G + + + G YI GEETALLE +EG +G+PR KPPFP N GL+G Sbjct: 291 QGLIGPDVLGTGRRLMLDIFTSPGGYILGEETALLECMEGHRGEPRNKPPFPGNYGLWGK 350 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 PT +N+VE+ A VP I+ RGA W++ G G K F++SGHV P M T + Sbjct: 351 PTLMNSVETFADVPAIVARGADWWNAQGVNGATGLKFFAVSGHVERPGVYCVPMGTTIRD 410 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 LI+ G G L AV PGG+S L + +D+ L E GS LG+ A++VM Sbjct: 411 LIDVAGGVAGGAE--LEAVQPGGASSNFLGPEHL-DVPLDFGTLAEAGSMLGSGAMVVMA 467 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVS 382 TD + A + F+++ESCG+C PCR G+ ++ ++ G + L E+ Sbjct: 468 AGTDALAAATNVLRFFRNESCGKCVPCRVGSTKAHDLLTDTLRSGGELDEARKARLLELE 527 Query: 383 KNIEGRTICALGDAAAWPIQGLI 405 + +IC LG A P+ ++ Sbjct: 528 LVLRKSSICGLGQVALGPVVSVL 550 >gi|300690964|ref|YP_003751959.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] gi|299078024|emb|CBJ50666.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum PSI07] Length = 421 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 142/397 (35%), Positives = 203/397 (51%), Gaps = 5/397 (1%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 G ++ G ++ L II+ ++++GL G GGAGF T KW S Sbjct: 16 GADYDRWIAAGGGAGLEIALA-NPASIIDTIESAGLAGMGGAGFPTHRKWRAAA-SLSAS 73 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 Y+VVN +E EPGT KD ++ PH ++EG +IA+ AI A YV +L Sbjct: 74 VKYVVVNGNEDEPGTFKDGLLLARTPHQVVEGALIAALAIRATHVVFYVNPRIADGLAAL 133 Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 A+ + AS L+ + LG+ V + V +G YI GE TA++ SLEG PR KPP Sbjct: 134 DEAIAQWRASPLVERLAATLGHPVALAVARSSGRYIGGEATAIVSSLEGGFPFPRRKPPH 193 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P G+ G PT +NN E+IA VP ILR G + Y G GTKL+S+SG V P E Sbjct: 194 PTESGIGGAPTLINNTETIANVPHILREGPAAYRALGVGEACGTKLYSLSGDVLRPGLYE 253 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 M + EL+ H GG+ G V GG S L A + +D+ ++ GS L Sbjct: 254 LPMGTSLRELVFAHGGGM-LGGKAFKGVFTGGPSNTLLTAADL-DVALDFASVRARGSNL 311 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT A+IV+ T I++ + R F+ ESCGQC PC+ GT M R++ R+ G A +R++ Sbjct: 312 GTGAMIVIGEGTSIVREVARYVEFFAAESCGQCPPCKCGTFQMARLLHRIDTGAASRRDV 371 Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 L + + + G CAL D A ++ ++ F Sbjct: 372 TALKSLCETLPGSGRCALIDGAVTVVESSLRTFPREY 408 >gi|309782672|ref|ZP_07677393.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA] gi|308918450|gb|EFP64126.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 449 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 122/397 (30%), Positives = 205/397 (51%), Gaps = 14/397 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + L RG ++K + ++N ++AS LRGRGGA F G+KW + C++ Sbjct: 64 RDLPTYR-RGG-AALEKARQMAPQALLNMMEASRLRGRGGAAFPAGIKWQAVAGACAE-T 120 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+VVNADE +PG DR ++ +P LIE IA+ A+GA +IY+R E+ + Sbjct: 121 KYVVVNADEGDPGAFSDRFLLEDDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMS 180 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ +G LG +++ + G GAYICGEET+LL +LEG++ + R +PP + Sbjct: 181 HALEQARVAGWLGP------TLELELVVGQGAYICGEETSLLNALEGRRPEVRPRPPQIS 234 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT V+NVE++ +P I+ GA+ Y+ G N+RGTKL S++ P E Sbjct: 235 ERGLFGAPTLVHNVETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFCRPGLYEVE 294 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 I+ +++E+ G+R G N L V GG +P + + Y+ ++ + +G Sbjct: 295 FGISLADVVEQLGQGLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQAIDCAVGH 351 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VI T I + + ++ F ESCG+CTPC GT + + + + D Sbjct: 352 GGVIAFADDTSIPRIVAQVLRFGARESCGKCTPCHLGTPILAAMADAAAN--RLPVDADR 409 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414 + + ++C G A +Q + +++ ++ Sbjct: 410 FRRLIDALAATSLCGHGRGLAEFVQSVRRHYPSELQA 446 >gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 585 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 152/408 (37%), Positives = 224/408 (54%), Gaps = 26/408 (6%) Query: 12 LYGLQGK-----SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGM 64 L + L+D + G + + ++ E G + + +GLRG GGAGF T Sbjct: 176 RGALDPEPIAWQRLADYRAAGGYTLLQRLRSGETGVAALEARLAEAGLRGLGGAGFPTAR 235 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 KW + + P YLVVNADE EPGT KDR + PH ++EG + ++ A+GA ++Y Sbjct: 236 KWQAVRAGAA--PRYLVVNADEGEPGTFKDRHYLETAPHRVLEGALASALAVGAAAIYVY 293 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 +R E+ L+ A+ E A+GL+ I++ GAGAYICGEE+AL+ESLEG Sbjct: 294 LRDEYPGLHAVLREAIAELEAAGLVAPGF-------IVLRRGAGAYICGEESALIESLEG 346 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 K G+PR +PPF A GL+G PT VNNVE++ +P + A +G GR G + FS+ Sbjct: 347 KPGKPRHRPPFVAEAGLFGRPTLVNNVETLYWIPLLAAGAAF--AGEGRRGRSGLRSFSV 404 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG VN P IT EL+++HCGG+ LLA +PGG+S LPA + +D Sbjct: 405 SGRVNKPGVHLAPAGITLRELVDEHCGGL-QPGHRLLAYLPGGASGGILPAA-LADLPLD 462 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L+ GS +G+AA+IV+ D+ L F+ ESCGQCTPCR GT ++ ++ Sbjct: 463 FDTLQPHGSFIGSAAIIVLSDQDDLRAVADNLLAFFADESCGQCTPCRLGTEKLLTLL-- 520 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ L +++ + +IC LG AA P+ L++ F + Sbjct: 521 ----RTDDWDVARLQALAQTLRDASICGLGQAAPNPVSSLLRFFPAEL 564 >gi|195091512|ref|XP_001997541.1| GH25296 [Drosophila grimshawi] gi|193906148|gb|EDW05015.1| GH25296 [Drosophila grimshawi] Length = 833 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 166/338 (49%), Positives = 213/338 (63%), Gaps = 3/338 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D DRIF NLYG L + RG W +L+ G +WI++EVK SGLRGRGG+G+ Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG KW F+ KV + L++N E EPGTCKDR+I+RHEPH +IEGC++A +A+G Sbjct: 186 TGNKWEFLQKVNA-NNKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 IYVR F E +LQ A+ E Y GLLG N+ G DI V G Y+ GEETAL+ Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303 Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 L GK +PR +PP+ G + P V N E++AVVPTILRRGA W++G GR N GTK Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 LFSI GHV +PCTVEE MS+ E+I+ H GG+ GGW+NLL V PGG S P + G Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +MDYD L++ GS GT +IV+ + D + + R Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQRSIE 461 >gi|187926810|ref|YP_001893155.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|241665140|ref|YP_002983499.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] gi|187728564|gb|ACD29728.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J] gi|240867167|gb|ACS64827.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D] Length = 480 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 114/394 (28%), Positives = 196/394 (49%), Gaps = 12/394 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + L+ + G D + + ++ V AS LRGRGGAGF G+KW + + Sbjct: 93 RHLAAYLEVGGGDALALARQMAPHALVALVNASRLRGRGGAGFPAGVKWQAVANEAA-AT 151 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+VVNADE +PG DR ++ +P +IE IA+ A+GA ++Y+R E+ + L Sbjct: 152 KYVVVNADEGDPGAFSDRFLLEDDPFLVIEAAAIAAHAVGARHGYLYLRKEYPVAAQVLS 211 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ A+G L ++ + G GAYICGEET+LL +LEG + + R +PP Sbjct: 212 RALEQARAAGWLAP------AFELELVVGQGAYICGEETSLLNALEGHRPEVRPRPPQIT 265 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT V+NVE++ +P I++ GA+ Y+ G +RGTKL S++ P E Sbjct: 266 RHGLFGAPTLVHNVETLCAIPWIVKHGAAAYAALGFSGSRGTKLLSLNSLFRRPGLYEVE 325 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT +++++ G+R L+ ++ GG +P + + Y+ ++ + +G Sbjct: 326 FGITLADIVDQLGQGLR--RGRLIGLMVGGPLAGIVPPALLH-TRLGYEDMQAIDCAVGH 382 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VI T I + + + F ESCG+CTPC GT + + + + Sbjct: 383 GGVIAFGDDTPIARIVAEVLRFGARESCGKCTPCHLGTPMLAAMAQ--AAAGGMPIDGSR 440 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411 + + ++C G A ++ + +++ Sbjct: 441 FNRLIDALAATSLCGHGRGLAEFVRSVQRHYPQE 474 >gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] Length = 571 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 137/426 (32%), Positives = 215/426 (50%), Gaps = 31/426 (7%) Query: 14 GLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 G G + + ++ V +L E + +I E++ SGL G GGAG +T KWS + K Sbjct: 140 GPTGWQIDPYEGQPRYEAVGLMLDGELSPEKMIQELELSGLFGLGGAGGATHGKWSEVRK 199 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 Y+V NADESEP KDR+++ PH +IEG +A+ +GA ++Y+R E+ Sbjct: 200 EP-GATKYIVCNADESEPAAFKDRELLLRVPHLVIEGMTLAALTVGAEKGYLYIRHEYHD 258 Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 + +++AA+ E G+LG ++ V G YICGE+TALLE++E ++ +PR Sbjct: 259 QIAAVEAALAEARERGILGQRILGSDRTFELEVFISPGGYICGEQTALLEAMEDRRAEPR 318 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 +PP P GL+GCPT +NNVE++A P I +G WY+G G G + SISG V Sbjct: 319 NRPPQPMKAGLWGCPTVLNNVETLAWTPAIALKGGKWYAGLGVNGATGMRFVSISGDVKR 378 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-------------- 296 P E T ELI KH GG++G ++ A+ P G S LPA Sbjct: 379 PGVYELPFGGTVGELI-KHAGGLKGT-QSVQAIAPSGPSGGFLPARLRVDQVSRKFAERF 436 Query: 297 --------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 + +D ++ + L + AV+V+ +++ FY++ESCG+C Sbjct: 437 FTGGRTEMSILDLPLDKPTMRMLDVPLLS-AVVVIGSEANLLDLAKNCLEFYRNESCGKC 495 Query: 349 TPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 PCR G+ ++ + E L G + + + +++ + +IC LG A P+ L+ Sbjct: 496 VPCRIGSQKLVEIAEDLIQHHGAMSPQRAEAIDDLATAMIQTSICGLGQVAPLPLTTLMT 555 Query: 407 NFRPLI 412 F L Sbjct: 556 YFPNLF 561 >gi|218260406|ref|ZP_03475735.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii DSM 18315] gi|218224534|gb|EEC97184.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii DSM 18315] Length = 400 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 116/292 (39%), Positives = 165/292 (56%), Gaps = 5/292 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + +++ + ++R + + K L E + +I E+ SGLRGRGG Sbjct: 111 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALTEMTPESVIKEIMDSGLRGRGGG 170 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW KV S Y+V NADE +PG DR I+ +PH+++E I + GA Sbjct: 171 GFPTGLKWQITRKVKSP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 229 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 +Y+R E+ E L+ A+ + GLLG N + DI + +GAGA++CGEETA Sbjct: 230 TKGLVYIRAEYPLAVERLKIAIHQAKEYGLLGDNIFGTDFSFDIEIRYGAGAFVCGEETA 289 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EG +G+ +KPPFP+ G GCPT VNNVE+ A VP IL +GA W+S G E ++ Sbjct: 290 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANVPVILLKGAEWFSSIGTEKSK 349 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289 GTK+F+++G VN +E M T E + GG AV GG S Sbjct: 350 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPS 400 >gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] Length = 585 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 127/357 (35%), Positives = 184/357 (51%), Gaps = 22/357 (6%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F KW + + P ++ VN DE EPGT KDR + +PH IEG +IA+ +G Sbjct: 236 FPAARKWRTVAAQPA--PRFMAVNIDEGEPGTFKDRHYLETDPHRFIEGMLIAAHVVGID 293 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 +IY+R E+ R L +D A+ I + GAGAY+CGEE+A++ Sbjct: 294 GIWIYIRDEYPALRRLLAEELDRVRAAWPDVP--------SIEIRRGAGAYVCGEESAMI 345 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV----VPTILRRGASWYSGFGREN 235 ES+EGK+G PRL+PP+ A VGL+G PT +N+E++ V L ++ GR Sbjct: 346 ESIEGKRGMPRLRPPYVAEVGLFGRPTLEHNLETLWWVRDIVAPALAGEPGPFASRGRNG 405 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 +G + FS+SG V P V IT EL+E+HCGG+ L PGG+S LPA Sbjct: 406 RKGLRSFSVSGRVAKPGVVVTDAGITLRELVEEHCGGM-LPGHELYGYFPGGASGGMLPA 464 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 ++ +D+D L E G +G+AA++V + F+ HESCGQCTPCR GT Sbjct: 465 -RLADMPLDFDTLGEYGCFIGSAAIVVFSQHDRARVLAENAMEFFAHESCGQCTPCRVGT 523 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 +M + LL E+ + +IC LG AA P+Q +++ F + Sbjct: 524 AKAAELM------KQPAWDAALLTELGTVMMDASICGLGQAAPNPMQSVLRFFPHEV 574 >gi|190345480|gb|EDK37372.2| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC 6260] Length = 314 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 150/250 (60%), Positives = 183/250 (73%), Gaps = 4/250 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +IL+KG WII+EVK SGLRGRGGAGF Sbjct: 63 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++ A+ A Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GLLG N+ GYD D+ +H G GAY+CGEETA Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG W++ FGRE N Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302 Query: 238 GTKLFSISGH 247 GTKLF ISG Sbjct: 303 GTKLFCISGP 312 >gi|146419677|ref|XP_001485799.1| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC 6260] Length = 314 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 150/250 (60%), Positives = 183/250 (73%), Gaps = 4/250 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIF N+YG G L + G W +IL+KG WII+EVK SGLRGRGGAGF Sbjct: 63 LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122 Query: 62 TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM ++ P YLVVNADE EPGTCKDR+I+R +PH L+EGC++ A+ A Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 A+IY+RGEF E LQ A++E Y +GLLG N+ GYD D+ +H G GAY+CGEETA Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG W++ FGRE N Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302 Query: 238 GTKLFSISGH 247 GTKLF ISG Sbjct: 303 GTKLFCISGP 312 >gi|225405648|ref|ZP_03760837.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme DSM 15981] gi|225042842|gb|EEG53088.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme DSM 15981] Length = 350 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 104/264 (39%), Positives = 157/264 (59%), Gaps = 4/264 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + + G + + K+L E D +I + +GLRGRGGA Sbjct: 88 FYKKQHRIALRNCGVINPEDIEEYIGTGGYQALGKVLTEMTPDEVIQTLLDAGLRGRGGA 147 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW + +D Y+ NADE +PG DR ++ +PH L+E IA +AIG+ Sbjct: 148 GFPTGLKWKLCKQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGS 206 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + ++YVR E+ + L A+ + LLG N G+D D+ + GAGA++CGEETA Sbjct: 207 NQGYVYVRAEYPIAVDRLTIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETA 266 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 L+ S+EGK+G+PR +PPFPA GL+G P+ +NNVE+ A +P I+ G W++ G E ++ Sbjct: 267 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSK 326 Query: 238 GTKLFSISGHVNYPCTVEESMSIT 261 GTK+F++ G +N VE M T Sbjct: 327 GTKVFALGGKINNTGLVEVPMGTT 350 >gi|298244918|ref|ZP_06968724.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963] gi|297552399|gb|EFH86264.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963] Length = 443 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 112/421 (26%), Positives = 213/421 (50%), Gaps = 9/421 (2%) Query: 7 RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMK 65 R+ + L+ S G + ++ L + + II +V + LRGRGGAG TG K Sbjct: 9 RLLRQQDDRDVRGLAAYRSAGGYSALESALRQNTPNQIIQQVTDARLRGRGGAGRLTGEK 68 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 W + + D Y++ NA +++ + R ++ + PH +IEG ++A++A+GA A+++ Sbjct: 69 WRVV-RSTDDDQKYVICNAYDADSRSLAARLLLEYNPHQVIEGIILAAYAVGASEAYLFT 127 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184 R + +++QAA+ E + L+G + + I V +I GEET + +++G Sbjct: 128 RSLYKEGIQTVQAALQEALEANLVGRDILGTDFSCTISVVAVDLGFIGGEETVQIAAIKG 187 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 ++G P +PPFPA GL+ PT +N+VE++A VP I+R G ++ G G+K+ ++ Sbjct: 188 RRGMPEQRPPFPAQYGLWDKPTAINSVETLANVPVIVREGPGAFAQTGTSITGGSKILTV 247 Query: 245 SGHVNY--PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 G PC +E T +++ + G+ +++ V+ GG+ LP + I Sbjct: 248 YGAGAESEPCVIEVPFGTTIRDILTRA--GVNASANDIRGVVVGGAEGGALPPS-LLDTI 304 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 DYD ++ G+ +G+ + V+ T ++ S + ESCG+C PCR G + ++ Sbjct: 305 FDYDPIEAAGAIVGSGVIEVLPVDTCMVAWAMERSRYLSKESCGKCVPCRLGVKRITGIL 364 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 E +V + ++D+L E ++ + ++C G A P++ + + + + C Sbjct: 365 EGVVSDLGVNGDLDVLDEFAQYVPNGSLCGFGVQATNPLKTAKRYWPEHFTMHVQELQ-C 423 Query: 423 N 423 Sbjct: 424 P 424 >gi|269836783|ref|YP_003319011.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] gi|269786046|gb|ACZ38189.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745] Length = 442 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 122/399 (30%), Positives = 187/399 (46%), Gaps = 13/399 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 +SL + ++G + + + + N + ASGLRGRGGA F TG KW + + P Sbjct: 30 ESLMEYRAQGGYAP--EGWAWSPEELRNLIAASGLRGRGGAAFPTGRKWHGVAAQPA--P 85 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 ++VNA ESEP + KDR ++ PH ++EG ++A+ AI A +Y+ R SL+ Sbjct: 86 RVVLVNAAESEPASAKDRTLLLRRPHLVLEGALLAARAIDAREIVLYLHATATEVRASLE 145 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ E A G+ + Y+ GE +A + G +P KPP P+ Sbjct: 146 LALRELRADGV--------QTPHFRIVTAPPGYVAGESSAAVRRANGGPAKPTFKPPRPS 197 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 G+ PT V NVE++ VP I R GA+W G N GT L ++SG VN P E Sbjct: 198 ERGVGKRPTLVQNVETLGNVPLIARHGANWLREVGAPNLPGTLLVTLSGAVNRPGVYEVP 257 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + ++E+ GG+ GG ++ G + P +GA ++ + L+ G LG Sbjct: 258 SGVPLRHIVEELGGGVIGGASIQAMLVGGYFAGWLGPDALEQGARLEPESLRAWGVSLGA 317 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A++V+ + L F+ ES QC C GT M V RL++G A E D Sbjct: 318 GAIVVVPNWICGLAQAAWLMRFFADESAQQCGTCLYGTRAMADVFARLLRGTASPSERDR 377 Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415 L+ ++ + GR C D AA + ++ F I Sbjct: 378 LHLWAERMLPGRGACGHLDGAAIAARTALEVFADDIRRH 416 >gi|291436113|ref|ZP_06575503.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291339008|gb|EFE65964.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 308 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 168/306 (54%), Gaps = 9/306 (2%) Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIV 163 IA++A GAH ++Y+RGE+ R ++ AVD A GLLG + GY DI + Sbjct: 4 WRYALTIAAYATGAHTGYLYLRGEYPRALHRMRHAVDRARARGLLGDDVLGQGYAFDIEI 63 Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223 GAGAY+CGEETAL S+EG +G+PR KPPFP GL+G PT NNVE++ V IL R Sbjct: 64 RRGAGAYVCGEETALFNSIEGYRGEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTR 123 Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283 GA Y+ G + GTKLF +SG V P E T L+E + L AV Sbjct: 124 GAPAYAATGTPGSTGTKLFCVSGSVERPGVYEVPFGTTLGALLEPAG-----VREGLRAV 178 Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 + GG++ + A ++ + ++G +E G+ LG+ V+ D + + + + R++ F++ E Sbjct: 179 LLGGAAGGFVRADEL-DIPLTFEGTREAGTTLGSGVVMAFDDTVPLPRLLLRIARFFRDE 237 Query: 344 SCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 SCGQC PCR GT + R+V+ G +I LL EV + + +IC LG A + Sbjct: 238 SCGQCVPCRVGTVRQEEALHRIVERTGADAAGDIALLREVGRAMRDASICGLGQTAWNAV 297 Query: 402 QGLIKN 407 + I Sbjct: 298 ESAIDR 303 >gi|320450369|ref|YP_004202465.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01] gi|320150538|gb|ADW21916.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01] Length = 490 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 134/389 (34%), Positives = 206/389 (52%), Gaps = 36/389 (9%) Query: 20 LSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L + G + + L+ + I+ V+ +GL GRGGA F +K + + + P Sbjct: 131 LDRYEALGGLVFLRRALKNLLAPEAILEAVEEAGLLGRGGAAFPAHIKMRAVAR--GEPP 188 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLVVNADESEPG KDR ++ H P ++EG ++A+ A+GA F+YVR EF L+ Sbjct: 189 RYLVVNADESEPGNFKDRYLLEHHPFLVLEGTLLAALAVGASQVFLYVRDEFEAAILGLE 248 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+ + +GLL V V G YICGEETALLES+EGK+ +PRLKPPFP Sbjct: 249 KAIHQLEEAGLL--------PVPTQVFTSGGLYICGEETALLESMEGKRAEPRLKPPFPV 300 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT V NVE++A +P ILR G G + KLFSI+G V P E Sbjct: 301 ERGLWGRPTLVQNVETLANLPLILREGP------GTWREKEPKLFSITGDVARPGLYELP 354 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + + ++ + K G + L AV+ GG++ + + + LG Sbjct: 355 LGTSLEDALRKAEG----EPEGLKAVLLGGAAG-------VFTRDFAFPLRYKGRLPLGA 403 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 A++ + D+ + + L+ F++ ESCG+C PC GT + ++ R ++R DL Sbjct: 404 GAIVAFGKEVDLWEVLLGLAEFFREESCGKCFPCPLGTAVQVEMVRR------RERNRDL 457 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIK 406 ++ + + ++G ++C LG +A W Q L++ Sbjct: 458 VHHLGQALKG-SLCGLGQSAYWAYQSLLE 485 >gi|289767858|ref|ZP_06527236.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces lividans TK24] gi|289698057|gb|EFD65486.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces lividans TK24] Length = 312 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 118/313 (37%), Positives = 172/313 (54%), Gaps = 9/313 (2%) Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLG 156 M +P+ L+E IA++A GAH ++Y+RGE+ R L A+++ GLLG + G Sbjct: 1 MEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTHAIEQARTRGLLGDDVLGQG 60 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 Y DI + GAGAYICGEETAL S+EG++G+PR KPPFP GL+G PT NNVE++ Sbjct: 61 YAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPVEKGLFGKPTVENNVETLVN 120 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V IL GA Y+ G + G KLF +SG V P E T EL+ Sbjct: 121 VLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELPFGATLGELLALAG-----V 175 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 DNL AV+ GG++ + ++ + ++G +E G+ LG+ V+ D + + + + R+ Sbjct: 176 RDNLRAVLLGGAAGGFVRPDEL-DIPLTFEGTREAGTTLGSGVVMAFDDTVPLPRLLLRI 234 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALG 394 + F++ ESCGQC PCR GT + R+ G A +I LL EV + + +IC LG Sbjct: 235 AEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAAADDIALLREVGRAMRDASICGLG 294 Query: 395 DAAAWPIQGLIKN 407 A ++ I Sbjct: 295 QTAWNAVESAIDR 307 >gi|237800539|ref|ZP_04589000.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023399|gb|EGI03456.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 110/281 (39%), Positives = 155/281 (55%), Gaps = 6/281 (2%) Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 + E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KPPFPA Sbjct: 1 MAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAA 60 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEE 256 VG++G PT VNNVE++ VP I+ G WY RE + GTKL SG V P E Sbjct: 61 VGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWEL 120 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + EL E + GG+R G+ L PGG+ L + A M G+ ++G+ +G Sbjct: 121 PFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKVGTRMG 178 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 T + +D S +++ + + F+ ESCG CTPCR+G W ++++ + G Q +I+ Sbjct: 179 TGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEMGQGQPGDIE 238 Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L + + G+T CA A P+ IK FR E I Sbjct: 239 TLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 279 >gi|91202933|emb|CAJ72572.1| similar to NADH dehydrogenase I chain F (1st module) EC: 1.6.5.3 [Candidatus Kuenenia stuttgartiensis] Length = 675 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 120/403 (29%), Positives = 190/403 (47%), Gaps = 19/403 (4%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 S + + + V K + I+ E+ ASGLRGRGGAGF TG+KW + + Sbjct: 239 SYEEYLCATGENAVHKARAMSPEQIVTELLASGLRGRGGAGFPTGVKWRTLVRHTCP-TR 297 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 Y+V NA E EPGT KDR ++R P+ IEG +IA+ A+ A +I ++ F E ++ Sbjct: 298 YVVCNAAEGEPGTFKDRYLLRKNPYATIEGMLIAAHAVNAAGIYIALKRSFGPSIERVRQ 357 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A+ E + GL+ ++I + G Y+ GEE ALL +EG PR P Sbjct: 358 AISEMASKGLMD-------GIEIKIVEGPEEYLFGEEKALLNVVEGFPPMPREAYCPPYE 410 Query: 199 VGLYGCPTTVN-----NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 +GL+ P + N N +++A VP+I+R G + + G + GT +F++ G V P Sbjct: 411 IGLFATPNSPNPALLDNAQTLAHVPSIVRHGGASFRRLGTHDTSGTLIFTVCGDVQRPGV 470 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E IT +L GG + G + L ++D + +GS Sbjct: 471 YECEAGITLRKLFYDVAGG-PHTGRQFKVALSGVACGVILADR--FDTPTEFDAFQMIGS 527 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG+A IV+D + I + ++ F ESC QC C+ G ++ L++ + Sbjct: 528 GLGSAGFIVLDNAASIPRVTQAVARFLYVESCNQCPACKAGLRTASHGIDELLQHLHLHD 587 Query: 374 E---IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + +D + E + + C L A I GL+++FR E Sbjct: 588 DRAGLDWIMEGAHSAPQANRCFLPAQGAKLIPGLVQSFREEFE 630 >gi|300697561|ref|YP_003748222.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CFBP2957] gi|299074285|emb|CBJ53832.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum CFBP2957] Length = 451 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 120/395 (30%), Positives = 192/395 (48%), Gaps = 12/395 (3%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + L G D + ++N V+ S LRGRGGAGF G+KW S R Sbjct: 64 RDLPTYRRGGGGDALAMAQAMAPQALVNMVRDSRLRGRGGAGFPAGIKWQATA-NESART 122 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 Y+VVNADE +PG DR ++ +P LIE IA+ A+GAH +IY+R E+ L Sbjct: 123 KYVVVNADEGDPGAFSDRFLLEDDPFRLIEAVAIAAHAVGAHGGYIYLRKEYPAAARVLA 182 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A++E A+G L + + G GAY+CGEET+LL +LEG++ + R +PP Sbjct: 183 RALEEARAAGWLPP------AFALELVVGRGAYLCGEETSLLNALEGRRPEVRPRPPQIT 236 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT V+NVE++ +P I+ GA+ Y+ G +RGTKL S++ P E Sbjct: 237 RQGLFGAPTLVHNVETLCAIPWIVTHGAAAYAALGFSQSRGTKLLSLNSLFRRPGLYEAE 296 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 IT +++E+ G+ L ++ GG +P + + Y+ ++ + +G Sbjct: 297 FGITLADIVERLGQGL--HRGRLKGLMVGGPLAGIVPPELLH-TRLGYEEMQAIDCAVGH 353 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 VI T + + + + F ESCG+CTPC G + + G + Sbjct: 354 GGVIAFADDTPVARIMAEVLRFGARESCGKCTPCHLGAPILAAMAAAAADGG--PIDRGR 411 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 + + ++C G A +Q + +++R + Sbjct: 412 WQRLVTALAQTSLCGHGRGLAEFVQSVQRHYRSEL 446 >gi|325968336|ref|YP_004244528.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta moutnovskia 768-28] gi|323707539|gb|ADY01026.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta moutnovskia 768-28] Length = 516 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 124/409 (30%), Positives = 196/409 (47%), Gaps = 20/409 (4%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVK-ASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + L ++R + +K L +G ++I E+ GL G G + +DR Sbjct: 125 EPLDKYIARSGYRYFEKFLNEGNKFLILELLVKVGLLGGGALTRLKALA------SNADR 178 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 P YL+VN E EPG KDR IM H L+EG ++ S A+ I V F + + Sbjct: 179 PKYLIVNGHEGEPGGFKDRLIMERNTHQLLEGALLLSLALNVDEVIIAVNERFRNAKAVI 238 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + A+DE L + L I V YI GEETAL+ S+EG +G+PRL+PP P Sbjct: 239 ERALDELR--TFLTNRDLLSKLPPITVSLIGSPYIVGEETALINSIEGGRGEPRLRPPDP 296 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 GL+G PT V NVE A +P +L G+E K F ++G V+ P E Sbjct: 297 TEAGLFGKPTAVINVEVAAAIPILLSN-----YYEGKE-ITIEKYFCVTGDVDRPGLYRE 350 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 ++I +EL+ K +N+ AV GG S + + +++ + + +++G LG Sbjct: 351 KLTIGLNELLVKAGA----KEENVKAVFVGGVSSGLVHSSRIKVRLTPEEA-RKLGVFLG 405 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 +I + S I+ + + F+ HESCG+C PCR GT ++ ++ER+ G A + ++ Sbjct: 406 PGVIIALSNSRCIVDVMLEVERFFAHESCGRCEPCRLGTRELVNILERISNGKANEEDLK 465 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 V+K + ++C LG +A + + FR EE + R Sbjct: 466 WAESVAKTMMDTSLCGLGMSAGKVLLDALSQFRDEFEEHVKGVCRAGVH 514 >gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] Length = 566 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 120/369 (32%), Positives = 180/369 (48%), Gaps = 9/369 (2%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I+ V+A+ LRGRGGAGF KW + P +V N DE +PG+ DR +M Sbjct: 197 TPEDILLRVEAAQLRGRGGAGFRAAAKWRAALDHPA--PRVVVANGDEGDPGSYADRLLM 254 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGY 157 + H ++EG V+A FA+GA ++VR E+ L+ A+ E +G LG + G+ Sbjct: 255 EQDAHRVLEGLVLACFAVGATTGIVFVRSEYPLAAARLRNALHEARRAGHLGPDIAGSGF 314 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 +++ V GAG+Y+ GEETALL L G +G R +PPFP G +G PT VNNVE++ V Sbjct: 315 SLEVRVAEGAGSYVSGEETALLNGLAGLRGVVRPRPPFPTERGFHGRPTVVNNVETLCAV 374 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 P I++ G Y+ G + GT + +S P E + ++E+ GG+RGG Sbjct: 375 PWIVQHGGPAYAALGTSDEAGTVIACLSERFLRPGAYEVEIGTPVRRIVEELGGGLRGGA 434 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 I G P + L G+ LG A ++ D + + L Sbjct: 435 TLRAIQIGGPLGGFLGPDD--LDVPLSDTALARHGAALGHAGIVAFDDRLSGEQVLRNLW 492 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 F ESCGQC+PCR GT W R + L E +V + + ++CA G Sbjct: 493 DFAAAESCGQCSPCRVGT-WRGRALAELPDAPDVGSERG---DVLRTMAAGSLCAFGRRV 548 Query: 398 AWPIQGLIK 406 ++ L++ Sbjct: 549 PAAVRSLVR 557 >gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246] Length = 686 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 207/486 (42%), Gaps = 94/486 (19%) Query: 12 LYGLQGKSLSDSMS----RGHWDNVDKILEKGRDWI---------------INEVKASGL 52 +YG QG D + + + + L + + E+K + L Sbjct: 192 IYGRQGWP-RDYRAVKRFTDYLARLIRPLVPPPRELGGKDLETYVQRFHPLLWELKTANL 250 Query: 53 RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 G GGAG KW + + Y+V N DESEPGT KDR+I+ PH ++EG ++A Sbjct: 251 LGMGGAGAPAYQKWLDVWQQP-GNEKYIVCNGDESEPGTFKDREILLRMPHLVVEGVILA 309 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYI 171 GA IYVR E+ + +L+ + G G N G + + V G YI Sbjct: 310 GLMTGATSGHIYVRHEYFEQIHALKEEIKRAQELGACGPNIFGSGRNFPVEVFESPGGYI 369 Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 CGE++AL+E++E ++GQPR +PP + G PT VNNVE++A P I+ G Y Sbjct: 370 CGEQSALIEAMEDRRGQPRNRPPELSANGFRDKPTVVNNVETLAWAPGIILFGGDKYEMG 429 Query: 232 G-------RENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGGIRGGWDNLLA 282 G + G +LFS+SG V P E ++ +T EL +K+CGGI G L A Sbjct: 430 GWRLATDPKIKFGGRRLFSVSGDVARPGVYEVAIGLTLGELFNGDKYCGGITG---PLRA 486 Query: 283 VIPGGSSVPCLPAGQMRGA----------------------------------------- 301 V G S +PA Sbjct: 487 VAASGPSGGLVPAKLPVDPKFDAKKRADAVARIRDRSAQDADFMEWFLNTHLPLGATELD 546 Query: 302 ----IMDYDGLKEMGSGLGT-------AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 +D + + + L AA+ V D++ + FY++ESCG+C P Sbjct: 547 VLKIPLDLNFFRHLNGALRLPVEAMLGAAITVYAGDVDVLDQAVNYTQFYRNESCGKCVP 606 Query: 351 CREGTGWMMRVMERLVK----GIAQKREIDLL----YEVSKNIEGRTICALGDAAAWPIQ 402 CR G+ ++++ E L+K G ++ + E++K ++ +IC LG A P+ Sbjct: 607 CRLGSQKLVQIGEGLLKSRRAGRLPADDLAAIKKDVKEITKTLQLTSICGLGYVAPIPLA 666 Query: 403 GLIKNF 408 ++ F Sbjct: 667 TALEYF 672 >gi|194374173|dbj|BAG62399.1| unnamed protein product [Homo sapiens] Length = 335 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 151/236 (63%), Positives = 178/236 (75%) Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G G P N G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ Sbjct: 89 GGAGFPTGLKWSFMNKPSDGRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFN 148 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +M Sbjct: 149 ISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 208 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM Sbjct: 209 DFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMA 268 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 269 RFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 50/92 (54%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLV-VNADESEPGTC 92 TG+KWSFM K RP + V P C Sbjct: 95 TGLKWSFMNKPSDGRPTTVANVETVAVSPTIC 126 >gi|297267279|ref|XP_002799509.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Macaca mulatta] Length = 335 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 152/236 (64%), Positives = 178/236 (75%) Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G G P N G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ Sbjct: 89 GGAGFPTGLKWSFMNKPSDGRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFN 148 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 ISGHVN+PCTVEE MS+ ELIEKH GG+ GGWDNLLAVIPGGSS P +P +M Sbjct: 149 ISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 208 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG WM +VM Sbjct: 209 DFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMA 268 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 R V+G AQ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ Sbjct: 269 RFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 49/92 (53%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLV-VNADESEPGTC 92 TG+KWSFM K RP + V P C Sbjct: 95 TGLKWSFMNKPSDGRPTTVANVETVAVSPTIC 126 >gi|225164244|ref|ZP_03726517.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224801149|gb|EEG19472.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 331 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 122/275 (44%), Positives = 162/275 (58%), Gaps = 6/275 (2%) Query: 4 DQDRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 Q RI + + G ++ + + + + + + +EVK SG+RGRGGAGF Sbjct: 19 QQRRIIFKHIDEAAYSNDIDCYLRNGGYEILKRAVARKPEDLRDEVKKSGIRGRGGAGFP 78 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 G+KW + + S +P YL+VNADESEPGT KDR I+ +PH LIEG +I+ FA A Sbjct: 79 CGVKWGLVDR-KSGKPIYLIVNADESEPGTFKDRYIIHQDPHQLIEGTIISCFANDVKQA 137 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGE L+ A+ E A +G N GY +I VH GAGAYICGEET L+E Sbjct: 138 YIYIRGEMPEGARILERAIAEARAKNFVGPNILGTGYSCEIYVHRGAGAYICGEETGLIE 197 Query: 181 SLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 SLEGK+ PR+KPP FPA +GLY CPT VNNVE++ V + G Y+ G NN GT Sbjct: 198 SLEGKRANPRIKPPYFPAVLGLYQCPTIVNNVETLCHVKHAIDIGGDNYAKIGTPNNTGT 257 Query: 240 KLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGI 273 ++F +SGHV P E IT +L+ CGG Sbjct: 258 RIFCVSGHVQRPGYYEFEAGKITMGQLLNDVCGGP 292 >gi|254818614|ref|ZP_05223615.1| hypothetical protein MintA_01759 [Mycobacterium intracellulare ATCC 13950] Length = 434 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 113/422 (26%), Positives = 187/422 (44%), Gaps = 30/422 (7%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 R+ + G + L+ G + + D ++ EV+ASGL GRGGA F +K Sbjct: 18 PRLLSEQGGRED--LAAYRQAGGYHPL-----TDTDALLGEVEASGLVGRGGAAFPLAVK 70 Query: 66 WSFMPKV----CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 + + +V N +E EP + KDR ++R+ PH +++G +A+ + A A Sbjct: 71 LRTVRENGRLMADTGGPVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAATLVAADRA 130 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181 ++YV S++ A+ G LG ++ V I + Y+ GEETA + + Sbjct: 131 YLYVSD--AESAHSVETAL------GELGPDT---LGVPITMLTVPAGYVAGEETAAVRA 179 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 + G +P KPP P G+ PT V+NVE++A +P + R G++ + G + GT L Sbjct: 180 INGGPAKPTDKPPRPFEAGVDDRPTLVSNVETLANLPYLQRHGSAAFRAQGTPLSPGTFL 239 Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 +I+G P E + F EL+ H D + + GG L + Sbjct: 240 ATITGAGRPPVLYELPHGLPFTELLALHG----VPADQVRGALMGGYFAGLLNRSVLETT 295 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 +D++ ++ +GSGLG A+ V+ + + ++ E+ GQC C GT M Sbjct: 296 -LDHETMRRVGSGLGCGAISVITD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAA 353 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 L G A +++ L S + GR CA DAA L+ F + +D Sbjct: 354 AGALRDGAATTEDVERLRRWSVVLRGRGACATLDAATNVAASLLDQFPDEVGAHVD--GA 411 Query: 422 CN 423 C Sbjct: 412 CP 413 >gi|240170417|ref|ZP_04749076.1| hypothetical protein MkanA1_13985 [Mycobacterium kansasii ATCC 12478] Length = 431 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 187/408 (45%), Gaps = 22/408 (5%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + ++ +G + + D +++E++++GL GRGGA F G+K + + Sbjct: 25 REPEDIAAYREQGGYRPLADA-----DTLLHEIESAGLLGRGGAAFPLGVKLRAVRRNGR 79 Query: 75 DRPHYLVV-NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +VV N +E EP + KDR ++R+ PH +++G +A+ +GA ++YV Sbjct: 80 AAGGAVVVANGEEGEPTSIKDRWLLRNRPHLVLDGLRLAATIVGAKRGYVYVSDPDAARG 139 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 A LGS++ G V I V Y+ GEETA + ++ G +P KP Sbjct: 140 --------AEAALAELGSDTLGG--VGISVWTVPPGYVAGEETAAVRAINGGPAKPTDKP 189 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P P VG+ G PT V+NVE++A +P + +RG+S + G ++ GT L +++G P Sbjct: 190 PRPYEVGVRGRPTLVSNVETLANLPYLQQRGSSAFRTQGTPSSPGTFLATVAGANRPPVL 249 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + F EL+ H + + + GG L + +D++ ++ GS Sbjct: 250 YELPHGLRFTELLALHG----VSSEQVRGTLMGGYFAGLLNRSVL-DTTLDHETMRRAGS 304 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG A+ V+ + + ++ E+ GQC C GT M V L A Sbjct: 305 GLGCGAISVITD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAVASALRDSAATPE 363 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 ++D L S + GR CA DAA L+ F + + R Sbjct: 364 DVDRLRRWSVVLRGRGACATLDAATNVAGTLLGQFPDEVARHLSGDCR 411 >gi|41406836|ref|NP_959672.1| hypothetical protein MAP0738c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395186|gb|AAS03055.1| hypothetical protein MAP_0738c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 436 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 181/404 (44%), Gaps = 25/404 (6%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + L+ G + + D +++EV+ASGL GRGGA F G+K + P Sbjct: 29 EDLAAYRGLGGYRPLA-----DGDQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAP 83 Query: 78 H----YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +V N +E EP + KDR ++R+ PH +++G +A+ +GA ++YV Sbjct: 84 RAGGTVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAAAVVGAERGYVYVSD--PEAA 141 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 S+++A+ E L G V + + Y+ GEETA + +L G +P KP Sbjct: 142 HSVESALGELDPDTLGG--------VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKP 193 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P P G+ PT V+NVE++A +P + GAS + G + GT L +ISG P Sbjct: 194 PRPFEAGVGDRPTLVSNVETLANLPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVL 253 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E F EL+ H D + + GG L ++ +D++ ++ GS Sbjct: 254 YELVHGTPFTELLALHG----VSADAVRGALMGGYFAGLLNRSVLQTT-LDHETMRRFGS 308 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG A+ V+ + + ++ E+ GQC C GT M L G A Sbjct: 309 GLGCGAISVLTD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTE 367 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++D L S + GR CA DAA L+ F + +D Sbjct: 368 DVDRLRRWSVLLRGRGACATLDAATNVAFSLLDQFPDDVTAHLD 411 >gi|7709907|gb|AAB29698.2| NADH:ubiquinone oxidoreductase flavoprotein 1 subunit [Homo sapiens] Length = 257 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 163/297 (54%), Positives = 194/297 (65%), Gaps = 41/297 (13%) Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 GRGGAGF TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ Sbjct: 1 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGG 60 Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172 A+ A A+IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYIC Sbjct: 61 RAMAARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 120 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 GEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFG Sbjct: 121 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 180 Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 RE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH G R Sbjct: 181 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGTDR------------------ 222 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 P KAI RL FYKH SCGQCT Sbjct: 223 -PGHSCGDR---------------------HGPLDGHRKAIARLIEFYKHASCGQCT 257 >gi|254773815|ref|ZP_05215331.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 436 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 112/404 (27%), Positives = 180/404 (44%), Gaps = 25/404 (6%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK----VC 73 + L+ G + + + +++EV+ASGL GRGGA F G+K + Sbjct: 29 EDLAAYRGLGGYRPLA-----DGEQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAP 83 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +V N +E EP + KDR ++R+ PH +++G +A+ +GA ++YV Sbjct: 84 GAGGTVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAAAVVGAERGYVYVSD--PEAA 141 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 S+++A+ E L G V + + Y+ GEETA + +L G +P KP Sbjct: 142 HSVESALGELDPDTLDG--------VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKP 193 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P P G+ PT V+NVE++A +P + GAS + G + GT L +ISG P Sbjct: 194 PRPFEAGVGDRPTLVSNVETLANLPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVL 253 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + F EL+ H + + + GG L ++ +D++ ++ GS Sbjct: 254 YELAHGTPFTELLALHG----VSANAVRGALMGGYFAGLLNRSVLQTT-LDHETMRRFGS 308 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG A+ V+ + + ++ E+ GQC C GT M L G A Sbjct: 309 GLGCGAISVLTD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTE 367 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 +D L S + GR CA DAA L+ F + +D Sbjct: 368 GVDRLRRWSVLLRGRGACATLDAATNVAASLLDQFPDDVTAHLD 411 >gi|145223072|ref|YP_001133750.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145215558|gb|ABP44962.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium gilvum PYR-GCK] Length = 430 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 113/402 (28%), Positives = 182/402 (45%), Gaps = 22/402 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDR 76 ++L++ + G + +++E+ +G+ GRGGA F +K + + Sbjct: 29 ETLAEYRAAGGYVA-----HDDPATLLDEIDRAGVLGRGGAAFPLAVKLTTVRSASLRGV 83 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 LV N +E EP + KDR ++R+ PH +++G +A+ IGA A +Y+ E + Sbjct: 84 DTVLVANGEEGEPASVKDRWLLRNRPHLVLDGLRLAARIIGARHAHVYLSDERAEGA--V 141 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 QAA+ E L G V + V Y+ GEETA + ++ G +P KPP P Sbjct: 142 QAALAETTPDLLDG--------VTVSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRP 193 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 G+ G PT V NVE++A +P + R GA Y G + + GT L +++G P E Sbjct: 194 FEEGVGGLPTAVCNVETLANLPYVQRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYEL 253 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT E+I H + + + GG L ++ + +D++ L+ +GSGLG Sbjct: 254 PFGITAGEVIALHG----IPAERVRGALMGGYFAGLL-DRRVLDSTLDHEALRALGSGLG 308 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 AV V+ + + +Y E+ QC C GT M E L G A ++ Sbjct: 309 CGAVSVLTEE-CPVAVGASVLAYYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLA 367 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L S+ + GR CA DAA ++ F + D Sbjct: 368 RLERWSQVLRGRGACATLDAACNIAASMLALFADDVARHADN 409 >gi|315443529|ref|YP_004076408.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Mycobacterium sp. Spyr1] gi|315261832|gb|ADT98573.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Mycobacterium sp. Spyr1] Length = 426 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 113/402 (28%), Positives = 182/402 (45%), Gaps = 22/402 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDR 76 ++L++ + G + +++E+ +G+ GRGGA F +K + + Sbjct: 25 ETLAEYRAAGGYVA-----HDDPATLLDEIDRAGVLGRGGAAFPLAVKLTTVRSASLRGV 79 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 LV N +E EP + KDR ++R+ PH +++G +A+ IGA A +Y+ E + Sbjct: 80 DTVLVANGEEGEPASVKDRWLLRNRPHLVLDGLRLAARIIGARHAHVYLSDERAEGA--V 137 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 QAA+ E L G V + V Y+ GEETA + ++ G +P KPP P Sbjct: 138 QAALAETTPDLLDG--------VTVSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRP 189 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 G+ G PT V NVE++A +P + R GA Y G + + GT L +++G P E Sbjct: 190 FEEGVGGLPTAVCNVETLANLPYVQRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYEL 249 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 IT E+I H + + + GG L ++ + +D++ L+ +GSGLG Sbjct: 250 PFGITAGEVIALHG----IPAERVRGALMGGYFAGLL-DRRVLDSTLDHEALRALGSGLG 304 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 AV V+ + + +Y E+ QC C GT M E L G A ++ Sbjct: 305 CGAVSVLTEE-CPVAVGASVLAYYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLA 363 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 L S+ + GR CA DAA ++ F + D Sbjct: 364 RLERWSQVLRGRGACATLDAACNIAASMLALFADDVARHADN 405 >gi|289679201|ref|ZP_06500091.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae FF5] Length = 246 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 112/247 (45%), Positives = 147/247 (59%), Gaps = 4/247 (1%) Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KW MPK S YL+ NADE EP T KDR +M PH L+EG +I++ A+ A Sbjct: 1 GFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKA 60 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 + +I++RGE++ + L AV E A+GLLG N G+D ++ VH GAG YICGEETA Sbjct: 61 YRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETA 120 Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN- 236 L+ SLEG++ PR KPPFPA VG++G PT VNNVE++ VP I+ G WY RE + Sbjct: 121 LINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSE 180 Query: 237 -RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 GTKL SG V P E + EL E + GG+R G+ L PGG+ L Sbjct: 181 DHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLP 239 Query: 296 GQMRGAI 302 + + Sbjct: 240 EHLDAPL 246 >gi|118463353|ref|YP_880187.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein [Mycobacterium avium 104] gi|118164640|gb|ABK65537.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein [Mycobacterium avium 104] Length = 436 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 114/404 (28%), Positives = 181/404 (44%), Gaps = 25/404 (6%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV----C 73 + L+ G + + + +++EV+ASGL GRGGA F G+K + Sbjct: 29 EDLAAYRGLGGYRPLAA-----GEQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAA 83 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 +V N +E EP + KDR ++R+ PH +++G +A+ +GA ++YV Sbjct: 84 GAGGTVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAAAVVGAERGYVYVSD--PEAA 141 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 S+++A+ E L G V + + Y+ GEETA + +L G +P KP Sbjct: 142 HSVESALGELDPDTLGG--------VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKP 193 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P P G+ PT V+NVE++A VP + GAS + G + GT L +ISG P Sbjct: 194 PRPFEAGVGDRPTLVSNVETLANVPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVL 253 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + F EL+ H D + + GG L ++ +D++ ++ GS Sbjct: 254 YELAHGTPFTELLALHG----VSADAVRGALMGGYFAGLLNRSVLQTT-LDHETMRRFGS 308 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG A+ V+ + + ++ E+ GQC C GT M L G A Sbjct: 309 GLGCGAISVLTD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTE 367 Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++D L S + GR CA DAA L+ F + +D Sbjct: 368 DVDRLRRWSVLLRGRGACATLDAATNMAASLLDQFPDDVTAHLD 411 >gi|11545457|gb|AAG37857.1|AF298190_7 NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium meliloti] Length = 280 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 95/271 (35%), Positives = 147/271 (54%), Gaps = 3/271 (1%) Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 A+G+LG++ + D+ V GAGAY+CGEET+LL SLEGK+G R KPP PA+ GL Sbjct: 2 ARAAGVLGASVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLPAHKGL 61 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261 + PT +NNV S+A VP IL +GA +Y FG +RGT I+G+V + E + +T Sbjct: 62 FDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFETAFGLT 121 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 E++++ GG + AV GG P + DY+ +G A ++ Sbjct: 122 LGEIVDEIGGGTASARP-VKAVQVGGPLGAYFPRA-LFDTPFDYEAFAARDGLIGHAGIV 179 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 V D + D++K F ESCG+CTPCR G+ + V +R+ GI ++ +LL ++ Sbjct: 180 VFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRELLADL 239 Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ ++CALG +P+ + +F Sbjct: 240 CNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 270 >gi|126436279|ref|YP_001071970.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium sp. JLS] gi|126236079|gb|ABN99479.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium sp. JLS] Length = 433 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 110/399 (27%), Positives = 182/399 (45%), Gaps = 22/399 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + +D G + + + +++EV+ SGL GRGGA F +K + R Sbjct: 29 EDYADYAQSGGYREL-----PDPERLLDEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRG 83 Query: 78 HYL-VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 + + N +E EP + KDR ++RH PH +++G +A+ + A A +YV S+ Sbjct: 84 GAVAIANGEEGEPASIKDRWLLRHRPHLVLDGLRLAARVVEAERAIVYVSD--PESARSV 141 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + A+ + ++ L G V I V Y+ GEETA + +++G +P KPP P Sbjct: 142 ETALTQVDSTVLDG--------VSISVVVVDPGYVAGEETAAVRAIDGGPAKPTDKPPRP 193 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 G+ G PT V+NVE++A +P + GA Y G ++ GT L +++G P E Sbjct: 194 FEEGVGGLPTLVSNVETLANLPYLHEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYEL 253 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +++ H D++ V+ GG L + A +D++ L+ +GSGLG Sbjct: 254 PHGVALADVLTWHG----ISPDSVSGVLMGGYFTGLLNRDVL-DATLDHEALRRLGSGLG 308 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 AV V+ + + ++ E+ GQC C GT M V L G+A ++ Sbjct: 309 CGAVGVLTDE-CPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLA 367 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 L S + GR C DAA L+ F + Sbjct: 368 RLERWSVVLRGRGACGTLDAATNVAASLLTAFPQAVARH 406 >gi|108800655|ref|YP_640852.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium sp. MCS] gi|119869794|ref|YP_939746.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium sp. KMS] gi|108771074|gb|ABG09796.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium sp. MCS] gi|119695883|gb|ABL92956.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium sp. KMS] Length = 433 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 110/399 (27%), Positives = 180/399 (45%), Gaps = 22/399 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 + +D G + + + ++ EV+ SGL GRGGA F +K + R Sbjct: 29 EDYADYAQSGGYREL-----PDPERLLEEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRG 83 Query: 78 HYL-VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 + + N +E EP + KDR ++RH PH +++G +A+ + A A +YV S+ Sbjct: 84 GAVAIANGEEGEPASIKDRWLLRHRPHLVLDGLRLAARVVEAERAIVYVSD--PESARSV 141 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 + A+ + + L G V I V Y+ GEETA + +++G +P KPP P Sbjct: 142 ETALTQVDSPVLDG--------VSISVVVVDPGYVAGEETAAVRAIDGGPAKPTDKPPRP 193 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 G+ G PT V+NVE++A +P + GA Y G ++ GT L +++G P E Sbjct: 194 FEEGVGGLPTLVSNVETLANLPYLHEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYEL 253 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +++ H D++ V+ GG L + A +D++ L+ +GSGLG Sbjct: 254 PHGVALADVLTWHG----ISPDSVSGVLMGGYFTGLLNRDVL-DATLDHEALRRLGSGLG 308 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 AV V+ + + ++ E+ GQC C GT M V L G+A ++ Sbjct: 309 CGAVGVLTDE-CPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLA 367 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 L S + GR C DAA L+ F + Sbjct: 368 RLERWSVVLRGRGACGTLDAATNVAASLLTAFPQAVARH 406 >gi|313680913|ref|YP_004058652.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977] gi|313153628|gb|ADR37479.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977] Length = 538 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 132/371 (35%), Positives = 185/371 (49%), Gaps = 25/371 (6%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 G D +I V+ +GLRG GGA F T K + +D Y+VVN DESEPG KDR +M Sbjct: 189 GADALIGAVREAGLRGLGGALFPTARKLEAVRAEAAD-AKYVVVNGDESEPGNFKDRWLM 247 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H P + G +A+ A+GA YVRGE+ ++AA E ASG Sbjct: 248 EHNPRLVWAGAALAARAVGAGEIVFYVRGEYAAAHARVEAARAELEASGYFE-------G 300 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + G G YICGEE+ALLES+EG++ +PRLKPP+PA GL+G PT VNNVE++A + Sbjct: 301 LKTQTFRGGGLYICGEESALLESIEGRRAEPRLKPPYPAQAGLFGRPTLVNNVETLAHLA 360 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 I GA Y R KLFSISG V P E + G + Sbjct: 361 WIAAHGAEAY------RARRPKLFSISGDVARPGVYELPLGTPLA----GALEAAGGAPE 410 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +L AV+ GG++ L +D++ + G +G A++ D+ ++ Sbjct: 411 DLQAVLMGGAAGTFLRLPDAAELPLDFEAPRLSGDAVGPGALVAFGGGRDLWAVAEGIAA 470 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 F+ HESCG+C C GT + + R +G L E+ +E ++C LG AA Sbjct: 471 FFAHESCGKCFSCSLGTPHLHAAVARRERG-------PQLEELFLALEQGSLCGLGQAAP 523 Query: 399 WPIQGLIKNFR 409 W ++ LI+ F Sbjct: 524 WAVRSLIRRFE 534 >gi|296169557|ref|ZP_06851177.1| possible NADH dehydrogenase (quinone) [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895823|gb|EFG75518.1| possible NADH dehydrogenase (quinone) [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 435 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 111/413 (26%), Positives = 186/413 (45%), Gaps = 22/413 (5%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64 + R+ G + ++ G + + D ++ EV+A GL GRGGA F + Sbjct: 18 EPRLLFEQTGQAREDIAAYRRLGGYRPLADA-----DALLGEVEAGGLVGRGGAAFPLAV 72 Query: 65 KWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 K + +VV N +E EP + KDR ++R+ PH +++G +A+ +GA A++ Sbjct: 73 KLRAVRDNGRGAGGAVVVANGEEGEPASLKDRWLLRNRPHLILDGLRLAAAMVGADRAYV 132 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 YV S++ A+ E G+LG V + + Y+ GEETA + ++ Sbjct: 133 YVSD--PESAHSVETALGELEP-GILGR-------VTVAMSAVQPGYVAGEETAAVRAIN 182 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G +P KPP P G+ PT V+NVE++A +P + RG++ + G + GT L + Sbjct: 183 GGPAKPTDKPPRPFEEGVDELPTLVSNVETLANLPFLQDRGSAAFRAQGTSLSPGTFLAT 242 Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 I+G P E + F EL+ H + + + GG L + A + Sbjct: 243 ITGAGRPPVLYELPHGLPFTELLALHG----VSPEAVRGALLGGYFAGLL-DRTVLEATL 297 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 D++ ++ +GSGLG A+ V+ + + ++ E+ GQC C GT M Sbjct: 298 DHETMRRLGSGLGCGAISVITD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAAG 356 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 L G A +++ L S + GR CA DAA L+ F + + Sbjct: 357 ALRDGAATAEDVERLRRWSVLLRGRGACATLDAATNVAASLLGRFAGEVTAHL 409 >gi|120405123|ref|YP_954952.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119957941|gb|ABM14946.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Mycobacterium vanbaalenii PYR-1] Length = 430 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 117/407 (28%), Positives = 182/407 (44%), Gaps = 22/407 (5%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 G +S + G + + + D + +E+ +G+ GRGGA F +K S + + Sbjct: 23 RDGTDTESAAQYRDAGGYLPLSDV-----DALHDEIARAGVLGRGGAAFPLAVKLSTVRR 77 Query: 72 V-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 S R LV N +E EP + KDR ++RH PH +++G +A+ IGA +YV + Sbjct: 78 AHQSGRDTVLVANGEEGEPASVKDRWLLRHRPHLVLDGLRLAARIIGARHTHVYVSDDRA 137 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 DE L G V + VH A Y+ GEETA + ++ G +P Sbjct: 138 AAAVLAAL--DEITPDALDG--------VTVSVHTVAPGYVAGEETAAVRAINGGPAKPT 187 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250 KPP P G+ G PT V+NVE++A +P + R A+ Y G + + GT L +++G Sbjct: 188 DKPPRPFEEGVGGLPTVVSNVETLANLPYVHRHDAAAYRELGTDGSPGTFLATLTGGGRP 247 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P E ELI H + + + GG + + G +D++ L+ Sbjct: 248 PGLYEIPFGTAAAELIALHG----VPAERVRGALMGGYFAGLVDRRILGGV-LDHESLRG 302 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 +GSGLG AV V+ + + +Y E+ GQC C GT M L GIA Sbjct: 303 LGSGLGCGAVSVITDE-CPVAVGASVLAYYDRENAGQCGSCFNGTAAMSAAATALRDGIA 361 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++ L S+ + GR CA DAA ++ F + +D Sbjct: 362 DGEDLARLRRWSEVLRGRGACATLDAACNIAASMLAMFPEEVARHLD 408 >gi|218678493|ref|ZP_03526390.1| NADH dehydrogenase (quinone) [Rhizobium etli CIAT 894] Length = 272 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 2/260 (0%) Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 G DI V GAGAY+CGEETALL SLEGK+G R KPP PA+ GL+ PT +NNV Sbjct: 5 LGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPAHKGLFDRPTVINNVI 64 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 S+A VP I+ +GA++Y FG +RGT I+G+V Y E + ++ ++I++ GG Sbjct: 65 SLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLYETAFGLSLGDIIDRIGGG 124 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 G + AV GG P + DY+ +G A ++V D + D++K Sbjct: 125 TATGRP-VKAVQVGGPLGAYFPRA-LFDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQ 182 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 F ESCG+CTPCR G+ + +++ GI ++ LL ++ ++ ++CA Sbjct: 183 ARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRALLADLCNTMKFGSLCA 242 Query: 393 LGDAAAWPIQGLIKNFRPLI 412 LG +P+ + +F Sbjct: 243 LGGFTPYPVMSAMTHFPEDF 262 >gi|218508846|ref|ZP_03506724.1| NADH dehydrogenase I subunit F [Rhizobium etli Brasil 5] Length = 196 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 166/195 (85%), Positives = 181/195 (92%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 MSRGHWD +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK RPHYLVVN Sbjct: 1 MSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVN 60 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 ADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+DEC Sbjct: 61 ADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAIDEC 120 Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 Y GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GLYG Sbjct: 121 YDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYG 180 Query: 204 CPTTVNNVESIAVVP 218 CPTTVNNVESIAV P Sbjct: 181 CPTTVNNVESIAVAP 195 >gi|47194143|emb|CAG14423.1| unnamed protein product [Tetraodon nigroviridis] Length = 281 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 159/238 (66%), Positives = 188/238 (78%), Gaps = 1/238 (0%) Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176 A A RGE E Q A++E YA+GL+G N+ GYD D+ V GAGAYICGEET Sbjct: 43 ARAADSDSRGEGYNESAKRQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEET 102 Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236 AL+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG SW+ GFGRE N Sbjct: 103 ALIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVAPTICRRGGSWFVGFGRERN 162 Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 GTKLF+ISGHVN+PCTVEE MS+ +LIE+H GG+RGGWDNLLAVIPGGSS P +P Sbjct: 163 SGTKLFNISGHVNHPCTVEEEMSVPLKDLIERHAGGVRGGWDNLLAVIPGGSSTPLIPKS 222 Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354 +MD+DGL + +GLGTAAVIVMD+STDII+AI RL FYKHESCGQCTPCREG Sbjct: 223 VCEEVLMDFDGLIQAQTGLGTAAVIVMDKSTDIIRAIARLIEFYKHESCGQCTPCREG 280 >gi|167830014|ref|ZP_02461485.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9] Length = 273 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 140/260 (53%), Gaps = 2/260 (0%) Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 + ++ V GAGAY+CGEETALLESLEGK+G R KPP PA GL+ PT +NNV Sbjct: 3 LGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLPALSGLFAKPTVINNVI 62 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++A VP I RGA++Y +G +RGT F ++G+V VE + +T EL+ GG Sbjct: 63 TLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVELAFGVTLRELLFDFGGG 122 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 G A GG LP GQ +DY+ +G+ +G +++ D ++++ + Sbjct: 123 TASGRPA-RAAQVGGPLGTYLPEGQ-WDIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAEL 180 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 F ESCG+CTPCR G+ + + R+ G +R++ LL ++ + ++CA Sbjct: 181 AEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVRLLRDLCDTMTAGSLCA 240 Query: 393 LGDAAAWPIQGLIKNFRPLI 412 +G +P+ + +F Sbjct: 241 MGGMTPYPVLSALDHFPEDF 260 >gi|118469883|ref|YP_889068.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mycobacterium smegmatis str. MC2 155] gi|118171170|gb|ABK72066.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit [Mycobacterium smegmatis str. MC2 155] Length = 431 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 108/417 (25%), Positives = 187/417 (44%), Gaps = 25/417 (5%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 I L + ++ + ++ G + +D +++ V+ASGL GRGGA F +K Sbjct: 15 ITPRLLRDEPETATTYLAAGGYRALD-----DPQGLLDAVEASGLLGRGGAAFPLAVKLR 69 Query: 68 FMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + +V+ N +E EP + KDR ++R+ PH +++G +A+ +GAH A +Y Sbjct: 70 TVRDNGRAAGGAVVIANGEEGEPASIKDRWLLRNRPHAVLDGLRLAALMVGAHRAVLYTS 129 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 + S++ A L V + + Y+ GEE+A + ++G Sbjct: 130 D--AQSARSVEHA---------LAETGGSSGGVAVELITVTTGYVAGEESAAVRVVDGGP 178 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 +P KPP P G+ G PT ++NVE++A + + GA+ + +G E + GT L +I+G Sbjct: 179 AKPTDKPPRPFEEGVGGYPTLISNVETLAHLAYLNLHGAADFREYGTEGSPGTFLATITG 238 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 P E + F +++ H D + + GG L + GA +D++ Sbjct: 239 AGRAPALYELPHGVAFTDVLALHG----VSPDTVTGALMGGYFAGLLGRE-IVGATLDHE 293 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366 ++ +GSGLG A+ V+ + + ++ E+ GQC C GT M V L Sbjct: 294 TIRGLGSGLGCGAISVLTD-DCPVAVAAAVLSYFDRENAGQCGSCFNGTAAMAAVATALR 352 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 G A ++ L S + GR CA D A L+ F ++ +D C Sbjct: 353 DGTATDDDVARLKRWSVVLRGRGACATLDGACNVAASLLSGFDDVVRRHLDNN--CP 407 >gi|218513053|ref|ZP_03509893.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3] Length = 232 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 102/228 (44%), Positives = 132/228 (57%), Gaps = 3/228 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L +Q R+ F + SLSD + G + + + I+ EV SGLRGRGGAG Sbjct: 6 FLKEQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 65 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + + Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 66 FPTGIKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 124 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 FIY R E+ ++ AV +G+LG + G DI V GAGAY+CGEETAL Sbjct: 125 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 184 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 L SLEGK+G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+ Sbjct: 185 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 232 >gi|146331922|gb|ABQ22467.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1 precursor-like protein [Callithrix jacchus] Length = 218 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 140/209 (66%), Positives = 167/209 (79%) Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 ++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG Sbjct: 1 TVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGG 60 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + GGWDNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVMDRSTDI+KA Sbjct: 61 VTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKA 120 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392 I RL FYKHESCGQCTPCREG WM +VM R V+G AQ EID L+E+SK IEG TICA Sbjct: 121 IARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICA 180 Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 LGD AAWP+QGLI++FRP +EER+ ++ + Sbjct: 181 LGDGAAWPVQGLIRHFRPELEERMQRFAQ 209 >gi|256962025|ref|ZP_05566196.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] gi|256952521|gb|EEU69153.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] Length = 296 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 99/277 (35%), Positives = 151/277 (54%), Gaps = 3/277 (1%) Query: 136 LQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 Q A+D +G LG N G++ DI + GAGAYICGE +ALL S+EGK G+PR+KP Sbjct: 1 FQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKP 60 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P A+VGLY PT VNNVES A VP ILR G + G + GTKL +SGH+ Sbjct: 61 PHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGL 120 Query: 254 VEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 E ++ +E+I + GG L + GG S P +R + Y+ L Sbjct: 121 YEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHD 180 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 + + A++VMD S +++ + ++ F+ HESCG+CTPCR GT ++ ++ + + A Sbjct: 181 LSVSSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATA 240 Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 ++ L ++ ++ + C LG + A P++ + F Sbjct: 241 SDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 277 >gi|213612345|ref|ZP_03370171.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 232 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 106/211 (50%), Positives = 141/211 (66%), Gaps = 2/211 (0%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 PFPA G++G PT VNNVE++ VP IL G Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANG 232 >gi|146331726|gb|ABQ22369.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1 precursor-like protein [Callithrix jacchus] Length = 215 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 138/204 (67%), Positives = 163/204 (79%) Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+ ELIEKH GG+ GGW Sbjct: 3 PTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGW 62 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 DNLLAVIPGGSS P +P +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL Sbjct: 63 DNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLI 122 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 FYKHESCGQCTPCREG WM +VM R V+G AQ EID L+E+SK IEG TICALGD A Sbjct: 123 EFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGA 182 Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421 AWP+QGLI++FRP +EER+ ++ + Sbjct: 183 AWPVQGLIRHFRPELEERMQRFAQ 206 >gi|224826606|ref|ZP_03699707.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] gi|224601207|gb|EEG07389.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002] Length = 332 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 145/266 (54%), Gaps = 7/266 (2%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 L+D ++RG + + + + V+ SGLRGRGGAGF G KW + +D Sbjct: 41 HRLADYVTRGGGTARQRAMAMAPEELRRAVEMSGLRGRGGAGFPAGRKWQAVAAQPAD-R 99 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 YLVVNADE +PG DR ++ +P ++E +IA+ +GA +IY+R E+ L Sbjct: 100 KYLVVNADEGDPGAFSDRFLLEDDPFRVLEAMIIAAHGVGAGQGYIYLRKEYPLAGARLA 159 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A+++ +G LG D+ + GAG+Y+CGEETALL +LEG++ + RL+PP + Sbjct: 160 EAIEQARRAGWLGER------FDVELVIGAGSYLCGEETALLNALEGRRPEVRLRPPQIS 213 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 GL+G PT ++NVE++ +P ++ GA Y+ G +RGTKL S++ + P E Sbjct: 214 ECGLFGAPTLLHNVETLCALPWVVEHGAVAYAALGFSLSRGTKLLSLNSLFSRPGLYEVE 273 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAV 283 + E+++K GG Sbjct: 274 FGLPLSEVVDKLGGGCAAVVSRGSWW 299 >gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 1198 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 29/373 (7%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + K + G + +I E+ S L GRGGAGF TG KW K + Y+V NADE P Sbjct: 830 EATKKAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPA-TDKYVVCNADEGLP 888 Query: 90 GTCKDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 T KD ++ HE + G I + IGA F+Y+R E+ +L+ A+ + + Sbjct: 889 STYKDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIKDVQRTC 948 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204 ++ K + G G Y+ GEE A ES+EG+ PR P FP GL+ Sbjct: 949 PELADLKY------EIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFHK 1002 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-ITFD 263 PT +NNVE+ VP I+++G+ + + KL S++G V P +E ++ + + Sbjct: 1003 PTVINNVETFFAVPHIIQQGSQDF-----GEGKMPKLLSVTGDVEQPILIETHLNNYSLN 1057 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 L+++ +++A GG + P + + + + G+ +V++ Sbjct: 1058 HLLKEIDA------KDIVAAEIGGCTEPIIFGSK-FDTLFGF----GKGTLNAVGSVVLF 1106 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 + S D+ K F ESC QC PCR+G+ R + L + L S+ Sbjct: 1107 NSSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALSVASE 1166 Query: 384 NIEGRTICALGDA 396 + +ICA G A Sbjct: 1167 SAARSSICAHGKA 1179 >gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 109/379 (28%), Positives = 172/379 (45%), Gaps = 32/379 (8%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D + K ++ G +I EV + L GRGGAGF TG KW K + Y+V NADE P Sbjct: 270 DAIKKAVQMGPMKVIKEVTEAKLLGRGGAGFMTGRKWESAYKAD-VKEKYVVCNADEGLP 328 Query: 90 GTCKDRDIM--RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 T KD ++ ++ ++ G I + IGA ++Y+R E+ +++A + + Sbjct: 329 STFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEYRNLVPNIEADIKK----- 383 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204 L S ++ V G G Y+ GEE A ES++G PR P FP GL+ Sbjct: 384 -LQSECPELAMLNYEVRLGGGPYVAGEENAQFESIQGSAPIPRKDRPSSVFPTIEGLFFK 442 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFD 263 PT +NNVE+ A VP I+++G++ + G KL S+SG V P +E + T + Sbjct: 443 PTVINNVETFACVPHIVQQGSAAFKTNGLP-----KLLSVSGDVERPLIIECLLNGYTLN 497 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAVIV 322 +LI+ ++ A GG + P + + + L GS V++ Sbjct: 498 DLIKDA------KARDVAAAEIGGCTEPLVFHDKFSMPFGFGKNVLNAAGS------VVL 545 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D + D + F ESC QC PCR+G + + +++ K L + Sbjct: 546 FDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKAFDQMRTTGKTKYNERSLKTAA 605 Query: 383 KNIEGRTICALGDAAAWPI 401 + + ICA G A P+ Sbjct: 606 EAAKLSAICAHGK-ALNPL 623 >gi|329934611|ref|ZP_08284652.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces griseoaurantiacus M045] gi|329305433|gb|EGG49289.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces griseoaurantiacus M045] Length = 543 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 162/381 (42%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + L+GRGGAGF K + + +VVN E EP KD Sbjct: 44 MGGEQLAQLAEQISLKGRGGAGFPFHKKLRSVAEQAIRRGTRPVVVVNGSEDEPACRKDT 103 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA + V E S++ A+ E G + + Sbjct: 104 VLINRAPHLILDGALLVAEALGARTLVVGVTRESTE--RSMEQALAER------GLSDRR 155 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 156 GAPIRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKISASQSGVGGLPTLLSNAETFA 215 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 216 QLAIAARIGPDRYRNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + + Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPIRQETCPLGESLQ 330 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R ME ++ G ++ L +V+K ++ R C+ D Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKAVKRRGACSHPD 389 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ IK F + + Sbjct: 390 GSAMFLESTIKAFTDDLAAHV 410 >gi|758215|emb|CAA88752.1| unknown [Brevundimonas diminuta] Length = 401 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 115/388 (29%), Positives = 179/388 (46%), Gaps = 12/388 (3%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + ++ + L G+GGA F + K + + YLVVN E EP Sbjct: 26 AAYRYATTIDAEAFLAQIDQAQLSGKGGANFPSARKMRLFHQQAAP-RKYLVVNGGEHEP 84 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 G+ KD ++ H P T+IEG + + A+GA + V +++ A +G L Sbjct: 85 GSAKDDWLLLHHPDTVIEGALCVAHALGATHILVAVNEGRAATVAAVREAAAAIAIAGRL 144 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 I V Y+ GEETALL+++ G+ +P +PP+P G G PT V+ Sbjct: 145 FPG--------IEVVLVPDEYVVGEETALLQAVAGQVAKPVRRPPYPIESGHQGMPTLVH 196 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NVE++A VP +L GA Y G G +G L + + + I + L+ + Sbjct: 197 NVETLAHVPYLLLLGAEAYRGLGAPG-QGVTLCTFGEEFVHAGVRLVPVGIDLNSLLYGY 255 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 GG++ G + AV PGG + LPA + D L+ GS LG AA+ S D+ Sbjct: 256 GGGLKSG-QAIRAVQPGGPASGFLPADR-FDVAFDSASLRAAGSSLGCAAITAYAASDDL 313 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 + A + + F+ SC QC CR T ++ ++ +L G A R + + + K G+ Sbjct: 314 VAAARQRAAFFASASCEQCPQCRMQTQMLLAIVRQLESGKANARTLQQIPVIVKANAGKA 373 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERID 417 IC L D PIQ LI F+ I+ R+ Sbjct: 374 ICGLIDMPVAPIQSLIHYFKGDIDARMR 401 >gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 641 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 170/374 (45%), Gaps = 31/374 (8%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + K + G + +I E+ S L GRGGAGF TG KW K + Y+V NADE P Sbjct: 273 EATKKAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPA-TDKYVVCNADEGLP 331 Query: 90 GTCKDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV-DECYAS 146 T KD ++ HE + G I + IGA F+Y+R E+ +L+ A+ D Sbjct: 332 STYKDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIMDVQRTC 391 Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYG 203 L D+ + G G Y+ GEE A ES+EG+ PR P FP GL+ Sbjct: 392 PELA-------DLKYEIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFH 444 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-ITF 262 PT +NNVE+ VP I+++G+ + + KL S++G V+ P E ++ + Sbjct: 445 KPTVINNVETFFAVPHIIQQGSQSF-----GEGKMPKLLSVTGDVDAPILFETHLNNYSL 499 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 + L+++ +++A GG + P + + + + G+ +V++ Sbjct: 500 NHLLKEIDA------KDIVAAEIGGCTEPIIFGSK-FDTLFGF----GKGTLNAVGSVVL 548 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 + S D+ K F ESC QC PCR+G+ R + L + L S Sbjct: 549 FNSSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKTSYNMRALSVAS 608 Query: 383 KNIEGRTICALGDA 396 ++ +ICA G A Sbjct: 609 ESAARSSICAHGKA 622 >gi|183984697|ref|YP_001852988.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase chain F), NuoF_1 [Mycobacterium marinum M] gi|183178023|gb|ACC43133.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase chain F), NuoF_1 [Mycobacterium marinum M] Length = 445 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 106/378 (28%), Positives = 174/378 (46%), Gaps = 25/378 (6%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP----KVC 73 + ++ ++G + + D ++ E+ ASGL GRGGA F +K + + Sbjct: 34 EDVAAYRAQGGYRPLGDA-----DKLLREIDASGLLGRGGAAFPLAVKMRAVRDNCRRAG 88 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 ++ N +E EP + KDR ++R+ PH +++G +A+ + A A++YV Sbjct: 89 PAGGAVVIANGEEGEPASFKDRWLLRNRPHLVLDGLRLAAALVAATRAYVYVSD--PESA 146 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 S++ A+ + G V + V Y+ GEETA + ++ G +P KP Sbjct: 147 RSVERALTQLDPDAFGG--------VAVSVWAVPPGYVAGEETAAVRAINGGPVKPSDKP 198 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P P G+ G PT V+NVE++A +P + R GAS Y G ++ GT L +I+G P Sbjct: 199 PRPFEYGVSGRPTLVSNVETLANLPYLHRHGASEYRALGTPSSPGTFLATITGAGRAPVL 258 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 E + F EL+ H + V+ GG L G + G +D++ ++ +GS Sbjct: 259 YELPYGLPFSELLALHA----VAPTKIRGVLMGGYFAGLLNRGVL-GTTLDHETMRRLGS 313 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 GLG A+ V+ + + ++ E+ GQC C GT M V L A Sbjct: 314 GLGCGAISVITD-DCPVAVAASVLSYFDRENAGQCGSCFNGTAAMAAVGGALRDFAATSE 372 Query: 374 EIDLLYEVSKNIEGRTIC 391 +ID L S + GR C Sbjct: 373 DIDRLRRWSVVLRGRGAC 390 >gi|302560697|ref|ZP_07313039.1| oxidoreductase [Streptomyces griseoflavus Tu4000] gi|302478315|gb|EFL41408.1| oxidoreductase [Streptomyces griseoflavus Tu4000] Length = 523 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + LRGRGGAGF K + + +VVN E EP KD Sbjct: 32 LGGEQLAQLAERINLRGRGGAGFPFHKKLRSVAESAIKRGVRPVVVVNGSEDEPACRKDT 91 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA + V E + S++AA+ E G N+ Sbjct: 92 VLINRAPHLILDGALLCAEAMGARTLVVGVTRESTQ--RSMEAALAER------GLNNGR 143 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASKNGVGGAPTLLSNAETFA 203 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + R Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIISRNSLDAVGGSLGAGAILPISQDTCPLGESLR 318 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R +E ++ G ++ + +V++N++ R C+ D Sbjct: 319 VAQWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVARNVKRRGACSHPD 377 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +K F + + Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398 >gi|323718239|gb|EGB27419.1| hypothetical protein TMMG_02286 [Mycobacterium tuberculosis CDC1551A] Length = 228 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 92/218 (42%), Positives = 130/218 (59%), Gaps = 4/218 (1%) Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 +NNVE+IA VP+I+ G W+ G E + G L+S+SGHV P E + IT EL+ Sbjct: 2 INNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELL- 60 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + GG+R G L PGGSS P L + +DY+G+ GS LGT A+ + D +T Sbjct: 61 DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAAGSMLGTKALEIFDETT 118 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL G +ID L ++S +I G Sbjct: 119 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILG 178 Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 ++ CALGD AA P+ IK+FR + + C F Sbjct: 179 KSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 215 >gi|294629306|ref|ZP_06707866.1| oxidoreductase [Streptomyces sp. e14] gi|292832639|gb|EFF90988.1| oxidoreductase [Streptomyces sp. e14] Length = 536 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 165/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + +A LRGRGGAGF K + +VVN E EP KD Sbjct: 44 LGGEQLAQLAEAINLRGRGGAGFPFHKKLRSVADSAIKRGVRPVVVVNGSEDEPACRKDT 103 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA + V E + S++AA+ E G ++ Sbjct: 104 VLINRAPHLILDGALLCAEALGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 155 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 156 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQTGVGGAPTLLSNAETFA 215 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 216 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + ++T + + Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPISQNTCPLGESLQ 330 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R ME ++ G ++ L +V++N++ R C+ D Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVARNVKRRGACSHPD 389 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +K F + + Sbjct: 390 GSAMFLESTVKAFTDDLAAHV 410 >gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 170/374 (45%), Gaps = 31/374 (8%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D + K ++ G +I EV + L GRGGAGF TG KW K + Y+V NADE P Sbjct: 270 DAIKKAVQMGSMKVIKEVTEAKLLGRGGAGFMTGRKWESAYKAD-VKEKYVVCNADEGLP 328 Query: 90 GTCKDRDIM--RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 T KD ++ ++ ++ G I + IGA ++Y+R E+ +++A + + Sbjct: 329 STFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEYRNLVPNIEADIKK----- 383 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204 L S ++ V G G Y+ GEE A ES++G PR P FP GL+ Sbjct: 384 -LQSECPELAMLNYEVRLGGGPYVAGEENAQFESIQGSAPIPRKDRPSSVFPTIEGLFFK 442 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFD 263 PT +NNVE+ A VP I+++G++ + G KL S+SG V P +E + T + Sbjct: 443 PTVINNVETFACVPHIVQQGSAAFKTNGLP-----KLLSVSGDVERPLIIECLLNGYTLN 497 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAVIV 322 +LI+ ++ A GG + P + + + L GS V++ Sbjct: 498 DLIKDA------KARDVAAAEIGGCTEPLVFRDKFSMPFGFGKNVLNAAGS------VVL 545 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 D + D + F ESC QC PCR+G + + +++ K L + Sbjct: 546 FDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKAFDQMRTTGKTKYNERSLKTAA 605 Query: 383 KNIEGRTICALGDA 396 + + ICA G A Sbjct: 606 EAAKLSAICAHGKA 619 >gi|51894238|ref|YP_076929.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863] gi|51857927|dbj|BAD42085.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863] Length = 394 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 127/395 (32%), Positives = 191/395 (48%), Gaps = 22/395 (5%) Query: 18 KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF--STGMKWSFMPKVCSD 75 + L+ +RG + ++ +G W++ +V +GLRGRGG+G G KW + Sbjct: 14 EDLAAYRARGGYAGLEAARTRGSGWVLEQVTRAGLRGRGGSGDGRPIGQKWQRVA-ASRV 72 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 Y+V NA ES+ + KDR ++ PH ++EG +IA+ A+GA A++YVRG+ + Sbjct: 73 PERYVVANAAESQAVSRKDRYLLARFPHRVLEGLLIAAQALGAREAYLYVRGDSPEALDG 132 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 + AV E A+GLLG V + V A + GEETA+L++LEG +G P+ KPP Sbjct: 133 ARDAVAEAGAAGLLG-------GVSVTVQPSAPTAVSGEETAILDALEGLEGYPQPKPPR 185 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P +GL G PT V N ES+A V + R G G GT LF+++G V+ P E Sbjct: 186 PEEIGLRGRPTLVQNAESLAAVAALFRLGVDRVRAVGTPTCPGTALFTVTGAVDRPGVYE 245 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + + +LAV+PGG L ++ + Y+ L +GS L Sbjct: 246 VPHGTPLA---QLLALAGAPPREEILAVLPGGLGSGPLRPDEL-DVPLTYEDLAALGSSL 301 Query: 316 GTAAVIVMDRST-DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 G +AV+V R+ + + SCGQC CREG ++R +E A++R Sbjct: 302 GNSAVVVFRRADATLPDLVRENVALLARGSCGQCRGCREGHEGLLRALEAGDATEARRRA 361 Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 LLY GR CA A ++ F Sbjct: 362 EVLLY-------GRGNCAFPTGTARFALRALQEFP 389 >gi|256787805|ref|ZP_05526236.1| oxidoreductase [Streptomyces lividans TK24] Length = 536 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 166/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + L+GRGGAGF K + + +VVN E EP KD Sbjct: 44 LGGEQLAQLSERINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 103 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA I V E + S++AA+ E G ++ Sbjct: 104 VLINRAPHLILDGALLCAEAMGARTLVIGVTRESTQ--RSMEAALAER------GLSNGR 155 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 156 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFA 215 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 216 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L+++G LG A++ + + T + R Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLR 330 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R +E ++ G ++ + +V+KN++ R C+ D Sbjct: 331 VAQWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 389 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +K F + + Sbjct: 390 GSAMFLESTVKAFTDDLAAHV 410 >gi|119595059|gb|EAW74653.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform CRA_b [Homo sapiens] Length = 230 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 136/210 (64%), Positives = 166/210 (79%), Gaps = 1/210 (0%) Query: 69 MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128 M K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A+IY+RGE Sbjct: 1 MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60 Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 F E +LQ A+ E Y +GL+G N+ GYD D+ V GAGAYICGEETAL+ES+EGK+G Sbjct: 61 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 VN+PCTVEE MS+ ELIEKH G R G Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGTDRPGH 210 >gi|229489886|ref|ZP_04383742.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit [Rhodococcus erythropolis SK121] gi|229323236|gb|EEN89001.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit [Rhodococcus erythropolis SK121] Length = 403 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 109/377 (28%), Positives = 171/377 (45%), Gaps = 18/377 (4%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 G D +I+ + SGL GRGGAGFS G+K + R ++ N E EP + KD ++ Sbjct: 30 GDDSVISAISRSGLAGRGGAGFSAGVK----MAAITGRRPVVIANGSEGEPLSSKDAVLL 85 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 PH +++G IA+ A+ A AF+ V E L+ A+ E SG + Sbjct: 86 SDSPHLVLDGLSIAAAAVRATDAFLVVPASHT---ERLRNAITERRHSGWDRT------- 135 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 D+ V AG ++ GE+TAL+ ++EGK PR + G+ G PT V+NVE++A V Sbjct: 136 -DVRVVASAGRFVSGEKTALIAAVEGKPPIPRSSLASSSKSGVKGRPTLVHNVETLAHVA 194 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 TI R G W+ G + GT L ++SG VN P VE + + ++ R D Sbjct: 195 TIARFGVDWFRSSGTTSEPGTMLVTLSGAVNNPGVVEVPIGSRLEWVVGDIG---RADMD 251 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 N AV+ GG + + G + + L +G+ G V + T ++A + Sbjct: 252 NTRAVLVGGYHGTWINRADLAGRRLSRESLAAIGARPGAGVVHALAVDTCGLRATADIVD 311 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + ES GQC PC G + V L ++ I + + ++GR C D Sbjct: 312 YLARESAGQCGPCLNGLPRLASVFGDLAYHRPGEQTIHEIRRYAGLVDGRGACHHPDGTV 371 Query: 399 WPIQGLIKNFRPLIEER 415 ++ + F + Sbjct: 372 RLVRSALTAFADDVRLH 388 >gi|21221032|ref|NP_626811.1| oxidoreductase [Streptomyces coelicolor A3(2)] gi|289771690|ref|ZP_06531068.1| oxidoreductase [Streptomyces lividans TK24] gi|6714679|emb|CAB66251.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] gi|289701889|gb|EFD69318.1| oxidoreductase [Streptomyces lividans TK24] Length = 524 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 166/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + L+GRGGAGF K + + +VVN E EP KD Sbjct: 32 LGGEQLAQLSERINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 91 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA I V E + S++AA+ E G ++ Sbjct: 92 VLINRAPHLILDGALLCAEAMGARTLVIGVTRESTQ--RSMEAALAER------GLSNGR 143 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFA 203 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L+++G LG A++ + + T + R Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLR 318 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R +E ++ G ++ + +V+KN++ R C+ D Sbjct: 319 VAQWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 377 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +K F + + Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398 >gi|239931336|ref|ZP_04688289.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672] Length = 536 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 163/381 (42%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + LRGRGGAGF K + + +VVN E EP KD Sbjct: 44 LGGEQLAQLAERINLRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDT 103 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA + V E + S++AA+ E G ++ Sbjct: 104 VLINRAPHLILDGALLCAEAMGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 155 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 156 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFA 215 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P VE + +++ Sbjct: 216 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQLAGA---- 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLM 330 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R +E ++ G ++ + +V+KN++ R C+ D Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 389 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +K F + + Sbjct: 390 GSAMFLESTVKAFTDDLAAHV 410 >gi|291439710|ref|ZP_06579100.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672] gi|291342605|gb|EFE69561.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672] Length = 524 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 163/381 (42%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + LRGRGGAGF K + + +VVN E EP KD Sbjct: 32 LGGEQLAQLAERINLRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDT 91 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA + V E + S++AA+ E G ++ Sbjct: 92 VLINRAPHLILDGALLCAEAMGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 143 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFA 203 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P VE + +++ Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQLAGA---- 259 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLM 318 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R +E ++ G ++ + +V+KN++ R C+ D Sbjct: 319 VAKWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 377 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +K F + + Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398 >gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis] Length = 1206 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 172/373 (46%), Gaps = 29/373 (7%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + K + G + +I EV S L GRGGAGF TG KW K + Y+V NADE P Sbjct: 830 EATKKAVSMGPEKVIEEVFKSNLVGRGGAGFRTGKKWESAYKTPA-SDKYVVCNADEGLP 888 Query: 90 GTCKDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 T KD ++ +E + G I + IGA F+Y+R E+ +L+ ++ + Sbjct: 889 STYKDWCLLNNEAKRKEVFTGMGICAKTIGAKRCFMYLRYEYRNLVPALEQSIKDVQ--- 945 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204 S D+ + G G Y+ GEE A ES+EG+ PR P FP GL+ Sbjct: 946 ---STCPELADLKYEIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNIFPTMEGLFHK 1002 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-ITFD 263 PT +NNVE+ +P I+++G+ + + KL S++G V+ P +E +++ + + Sbjct: 1003 PTVINNVETFFAIPHIIQQGSQSF-----GEGKMPKLLSVTGDVDEPILIETNLNNYSLN 1057 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 L+++ +++A GG + P + + + + G+ +V++ Sbjct: 1058 HLLQEISA------KDIVAAEIGGCTEPIIFGSK-FDTLFGF----GRGTLNAVGSVVLF 1106 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383 + S D+ K F ESC QC PCR+G+ R + L + L S+ Sbjct: 1107 NSSCDLGKIYENKLKFMAEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALAVASE 1166 Query: 384 NIEGRTICALGDA 396 + +ICA G A Sbjct: 1167 SAARSSICAHGKA 1179 >gi|330944403|gb|EGH46418.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str. 1704B] Length = 254 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTK 240 E ++ PR KPPFPA VG++G PT VNNVE++ VP I+ G WY RE + GTK Sbjct: 1 EARRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTK 60 Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 L SG V P E + EL E + GG+R G+ L PGG+ L + Sbjct: 61 LMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-D 118 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 A M G+ ++G+ +GT + +D S +++ + + F+ ESCG CTPCR+G W ++ Sbjct: 119 AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVK 178 Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 ++ + G Q +I+ L + + G+T CA A P+ IK FR E I Sbjct: 179 MLRAIENGQGQPGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 235 >gi|291279649|ref|YP_003496484.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1] gi|290754351|dbj|BAI80728.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1] Length = 495 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 110/384 (28%), Positives = 187/384 (48%), Gaps = 35/384 (9%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + ++ + K+L RD ++ VK S LRGRGGA F T K+ + K + YL Sbjct: 142 DEYITT-----LTKLLSADRDDLLERVKKSDLRGRGGANFPTYKKFEAI-KNINSSKKYL 195 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 V N DESEP KDR ++ P + G +++++ +GA Y+RGE+I++++ + Sbjct: 196 VCNIDESEPFVFKDRALLEINPFVAVAGAILSAYIVGATDIIFYIRGEYIKQKKI----L 251 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 E + LL + +++ + GAGAY+CGEET L+ES EGK+G PR KPP+P G Sbjct: 252 SEITSYFLLEIDFF--NSLNVEIVSGAGAYVCGEETGLIESFEGKRGNPRNKPPYPFESG 309 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 ++G PT VNN+E+++ V + + + N +L S+ G V VE + + Sbjct: 310 IFGKPTLVNNIETLSYVFEVCEK---------KIVNLNKRLISVCGDVKEKGVVEIDLDV 360 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 +E+++ C G I GG+S + + D++ S +G+ + Sbjct: 361 AINEIVKNICDRTIGNPG---FAILGGASGFFVDKNNFSKKLRDFE-----KSFVGS--I 410 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 + D S D + + F+ ESCGQC PC +G + ++ + + +I Sbjct: 411 FIADESRDKLSILKYFVSFFADESCGQCIPCYKGYQKLEEIL-SINNLNDKVEDI---KS 466 Query: 381 VSKNIEGRTICALGDAAAWPIQGL 404 + +++ T C LG A + Sbjct: 467 IVESMSVSTRCGLGKAIKNGVYSF 490 >gi|302551362|ref|ZP_07303704.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736] gi|302468980|gb|EFL32073.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736] Length = 524 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + L+GRGGAGF K + + +VVN E EP KD Sbjct: 32 MGGEQLAQLAERINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 91 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA + V E + S++AA+ E G ++ Sbjct: 92 VLINRAPHLILDGALLCAEALGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 143 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAVPPGRKVSASQNGVGGAPTLLSNAETFA 203 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + R Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQDTCPLGESLR 318 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R ME ++ G ++ L +V+KN++ R C+ D Sbjct: 319 VAQWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKNVKRRGACSHPD 377 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ IK F + + Sbjct: 378 GSAMFLESTIKAFTDDLAAHV 398 >gi|160334187|gb|ABX24511.1| respiratory-chain NADH dehydrogenase [Streptomyces cacaoi subsp. asoensis] Length = 497 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 24/392 (6%) Query: 14 GLQGKSLSDSMSRGHWDNV------DKILEKGRDW---IINEVKASGLRGRGGAGFSTGM 64 G + L+D + G + + L + D +++ V+A+GL GRGGAGF T Sbjct: 75 GYTARLLADWRATGRPATLGDHLRHREALRRTTDARGSLVDAVEAAGLTGRGGAGFPTAR 134 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 K + +VVNA ESEP + KD+ ++ PH +++G V+A+ +GA + Sbjct: 135 KMRSV--AAGRGRPVVVVNAMESEPASRKDQFLIAVAPHLVLDGAVLAAVQVGADTVHVC 192 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 + ++ L AV+E ++ L V I +H Y+ E T+L+ L+G Sbjct: 193 LPRTRTAQQRRLGNAVEERRSARLD--------PVRIRLHALPHGYVSSESTSLVRWLDG 244 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +PR PP G+ PT V+N E++A + I R G W+ G + GT + ++ Sbjct: 245 GPARPRGNPPHSHERGVARRPTLVHNAETLAHLALIARHGPDWFRRAGTPDEPGTMMITV 304 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG V P E + I + G + + A++ GG + LPA + + Sbjct: 305 SGAVTAPGVGEVPLGIPL----DTALGRAGDTTEPVRALLVGGFAGTWLPAEDLH-TPLT 359 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 L +G+ G +I + RS + R+ F +S QC PCR G + Sbjct: 360 RRDLAPLGAAPGAGVLIALPRSACGLLETARILAFLGAQSARQCGPCRYGLPAVAEDFAA 419 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 L G + + L + + R C D Sbjct: 420 LAAGQSHPELLSRLRRRTGLLPDRGACRHPDG 451 >gi|290960411|ref|YP_003491593.1| oxidoreductase [Streptomyces scabiei 87.22] gi|260649937|emb|CBG73053.1| putative oxidoreductase [Streptomyces scabiei 87.22] Length = 537 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 166/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + L+GRGGAGF K + + +VVN E EP KD Sbjct: 44 MGGEALAQLSERINLKGRGGAGFPFHKKLRSVAESAIKRGIRPVVVVNGSEDEPACRKDT 103 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA I V E S++AA+ E G +++ Sbjct: 104 VLINRAPHLILDGALLVAEALGARQLVIGVTRESTE--RSMEAALAER------GLSNRR 155 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 156 GAAIRASVQRNPVRMVTGAAGSLIRSIDGGPPIPPGRKTSASKSGVGGAPTLLSNAETFA 215 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G+ Y G + GT + ++SG V P +E + +++ Sbjct: 216 QLAIGARIGSERYGNTGLYDEPGTVMLTVSGAVARPMVIEAPTGVPLRYILQLAGA---- 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + A++ + L +G LG A++ + + T + + Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVNEAVVSRNSLDAVGGALGAGAILPISQDTCPLGESLQ 330 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R ME ++ G ++ L +V+KN++ R C+ D Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKNVKRRGACSHPD 389 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ IK F + + Sbjct: 390 GSAMFLESTIKAFTDDLAAHV 410 >gi|164430982|gb|ABY55763.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila silvestris] Length = 193 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 127/188 (67%), Positives = 148/188 (78%) Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 N GTKLF+ISGHVN PCTVEE MSI ELIE+HCGG+ GGWDNLL VIPGGSS P +P Sbjct: 1 NSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHCGGVVGGWDNLLGVIPGGSSTPIIPK 60 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 IMD+DGL + LGTAA+IVMD+STD+IKAI RL FYKHESCGQCTPCREG Sbjct: 61 KVCDDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGI 120 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 GWM ++MER VKG AQ EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R Sbjct: 121 GWMNKIMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKR 180 Query: 416 IDQYHRCN 423 + + + Sbjct: 181 MQLHAQQP 188 >gi|29832029|ref|NP_826663.1| oxidoreductase [Streptomyces avermitilis MA-4680] gi|29609147|dbj|BAC73198.1| putative oxidoreductase [Streptomyces avermitilis MA-4680] Length = 524 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 165/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + + L+GRGGAGF K + + +VVN E EP KD Sbjct: 32 MGGEQLAQLSERISLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 91 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA I V E + S++AA+ E G +++ Sbjct: 92 VLINRAPHLILDGALLVAEALGARTLVIGVTRESTQ--RSMEAALSER------GLSNRR 143 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 144 GAAIRARVQRNPIRMVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFA 203 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R GA Y G + GT + ++SG V P +E + +++ Sbjct: 204 QLAIAARIGAERYCNTGLYDEPGTVMLTVSGAVARPMVLEVPTGVPLRYVLQLAGA---- 259 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + R Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGESLR 318 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R M ++ G ++ L +V+K ++ R C+ D Sbjct: 319 VAQWLADESAGQCGPCYLGLPAAARGMADILNGGG-PAALEALKQVAKAVKRRGACSHPD 377 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +K F + + Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398 >gi|218660421|ref|ZP_03516351.1| NADH dehydrogenase (quinone) [Rhizobium etli IE4771] Length = 303 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 124/299 (41%), Positives = 173/299 (57%), Gaps = 15/299 (5%) Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166 EGCVIASFA+GA+ A+IYVRGE+IRERE+LQAA+DECY GLLG N+KLG+D+DI VHHG Sbjct: 1 EGCVIASFAMGANAAYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHG 60 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 AGAY+CGEETALL SLEG +G R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+ Sbjct: 61 AGAYVCGEETALLNSLEGTRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 120 Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 +Y FG +RGT I+G++ Y E + ++ +++++ GG G + AV G Sbjct: 121 FYRDFGMGRSRGTIPLQIAGNIRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVG 179 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 G P + DY+ +G A ++V D + D++K + Sbjct: 180 GPLGAYFPRA-LFDTPFDYESFAARDGLIGHAGIVVFDDTADMLKQARFAMGILRRRE-- 236 Query: 347 QCTPCREGTGWMMRVMERLVKGIA-------QKREIDLLYEVSKNIEGRTICALGDAAA 398 R+ R+ R G ++R LL ++ N E ++CALG A Sbjct: 237 ----LRQVHALSHRLDARRRDGRQDRPWASSRRRTGALLADLCNNDEIGSLCALGGFTA 291 >gi|21234156|ref|NP_639733.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] gi|13620642|emb|CAC36681.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] Length = 525 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 167/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + +A L+GRGGAGF K + + +VVN ES+P KD Sbjct: 32 LGGEQLAKLAEAINLKGRGGAGFPFHKKLRSVTEAAIKRGVRPVVVVNGSESDPSCRKDT 91 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++ + A+GA + V E + S++AA+ E G ++ Sbjct: 92 VLINRAPHLILDGALLVAEALGARTLVVGVTRESTQ--RSMEAALAER------GLSNSR 143 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 144 RSALRASVQRNPVRMVTGSAASLIRSIDGGPAIPPGRKVSASQSGVGGAPTLLSNAETFA 203 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 204 QLAIAARIGRERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + + Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGEALQ 318 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R +E ++ G ++ L +V++N++ R C+ D Sbjct: 319 VAKWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALETLKQVARNVKRRGACSHPD 377 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ +IK F + + Sbjct: 378 GSAMFLESMIKVFTDDLAAHV 398 >gi|301061235|ref|ZP_07202017.1| NADH-quinone oxidoreductase subunit F family protein [delta proteobacterium NaphS2] gi|300444554|gb|EFK08537.1| NADH-quinone oxidoreductase subunit F family protein [delta proteobacterium NaphS2] Length = 293 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 134/254 (52%), Gaps = 5/254 (1%) Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAG 59 M Q I + + S+ G ++ + ++L + I V SGL+GRGGAG Sbjct: 2 MPAAQPLILKDRLEHETISIDKYRRTGGYEGLRELLNHVAPENIKKTVLDSGLQGRGGAG 61 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F G KW +P P Y+V N DE EPGT KDR ++ PHT+IEG +IA +A A Sbjct: 62 FPAGKKWQLLPDDAP-HPRYIVANTDEMEPGTFKDRLLLSVHPHTVIEGMIIAGYANSAE 120 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178 + ++R + + + A+ E A+G LG + +I+VH AG YICGE L Sbjct: 121 KGYFFIRPSYQQIALKFENALSEARAAGFLGQQILGSDFSFEIVVHRSAGRYICGEAKGL 180 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNR 237 + +L+G++ P ++ GL+G PT VNN E++A VP I+R GA W+ G+ Sbjct: 181 IHALQGERPHPNIEGHLT-EEGLWGRPTIVNNAETLAYVPHIVRNGAEWFRDLGKHDKAP 239 Query: 238 GTKLFSISGHVNYP 251 G K++S+ G V P Sbjct: 240 GNKIYSVCGRVRRP 253 >gi|322369579|ref|ZP_08044143.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haladaptatus paucihalophilus DX253] gi|320550749|gb|EFW92399.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haladaptatus paucihalophilus DX253] Length = 517 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 98/420 (23%), Positives = 171/420 (40%), Gaps = 34/420 (8%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGL--RGRGGAGFSTGMK 65 + + + + V + +I+ V+ GL RGRG A + Sbjct: 120 VLERCGWVDPTTAEGYE-----EFVAAEAGAAPETVISRVETVGLLGRGRGDARMDEPVA 174 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 + +D +VVNA E++ DR ++ +P +++G + AIGA +Y Sbjct: 175 EEWRTARETDGDPVVVVNAGETDDRNATDRTLLEADPVAVLDGATAVASAIGAEDIVVYC 234 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 + RE ++ A+ +++ V I YI E T LE+LEG Sbjct: 235 PESALGTRERVRKAMTA-------FNDTDAAEGVTIRTFAAPDMYIAAEPTMALEALEGN 287 Query: 186 -KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 + + RL+PP P GLYG PT V+ + A V ILR + + + GT+L ++ Sbjct: 288 DRLEARLRPPSPGEHGLYGRPTIVHTPRTFAQVRRILRDPD---AFDPDDADPGTRLLTV 344 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 +G V P T+E + + ++E GG R Sbjct: 345 TGDVTAPATLELPTGGSLETVLEAV-----SVDSEFKMACVGGQFGGV-----TRSLDHT 394 Query: 305 YDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 G+ LGT V+ + D+S + + F + E+CG+C PCREG+ + ++ Sbjct: 395 PSAPALTGARLGTDGVVELFDQSRCAVVTAGTRARFAEEENCGRCVPCREGSKQLTNLLR 454 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + G + D+L E+++ + +IC G +A+ P+ + F P + RC Sbjct: 455 DIYSGEFKD---DMLRELARTMRETSICYFGRSASRPVTTAMDEFEPEFHAHAE--GRCP 509 >gi|329909992|ref|ZP_08275177.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium IMCC9480] gi|327546329|gb|EGF31348.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium IMCC9480] Length = 206 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 95/201 (47%), Positives = 126/201 (62%), Gaps = 2/201 (0%) Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 + G Y+G G+ NN GTK+FS+SG V P E + F L+E G Sbjct: 1 MFAMGGEAYAGLGKPNNGGTKIFSMSGDVAKPGNYEVPLGTPFATLLELAGGM--RDGKK 58 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + AVIPGGSS+P L M MDYD + + GS LG+ AVIVMD + ++K++ RLS F Sbjct: 59 IKAVIPGGSSMPVLTGDVMMATDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYF 118 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 Y ESCGQCTPCREGTGW+ R++ R+ G + ++DLL ++ NI+GRTICALGDAAA Sbjct: 119 YYEESCGQCTPCREGTGWLYRMVHRIEHGQGRADDLDLLNSIADNIQGRTICALGDAAAM 178 Query: 400 PIQGLIKNFRPLIEERIDQYH 420 P++ +IKNFR E I+ H Sbjct: 179 PVRAMIKNFREEFEYHIEHKH 199 >gi|19527557|gb|AAL89893.1| RE33648p [Drosophila melanogaster] Length = 239 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 110/180 (61%), Positives = 134/180 (74%), Gaps = 1/180 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 50 LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA A+GA A Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180 +IY+RGEF E ++Q A+ E Y +GL+G N+ GYD D+ +H GAGAYICGEETAL+ Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIN 229 >gi|239941073|ref|ZP_04693010.1| oxidoreductase [Streptomyces roseosporus NRRL 15998] gi|239987553|ref|ZP_04708217.1| oxidoreductase [Streptomyces roseosporus NRRL 11379] gi|291444513|ref|ZP_06583903.1| oxidoreductase [Streptomyces roseosporus NRRL 15998] gi|291347460|gb|EFE74364.1| oxidoreductase [Streptomyces roseosporus NRRL 15998] Length = 525 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 153/381 (40%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 + + + LRGRGGAGF G K + K +V+N E EP KD Sbjct: 44 MTGERLAELAETISLRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDT 103 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++A+ A+GA + V + A G + + Sbjct: 104 VLLNRAPHLILDGALLAAEALGARTLVVAVTRNSTE--------ISVRAALAERGLSDRR 155 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G + V + GE ++++ + G P + A G+ G PT ++N E+ A Sbjct: 156 GQQLRARVVRTPERMVSGEASSVIRAANGGPALPPGRRERAAETGVGGAPTLLSNAETYA 215 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G N GT L ++SG V P VE + ++E Sbjct: 216 QLAVAARIGPRRYGHTGLPNEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLEMAGA---- 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A A++ + L +G LG A++ + T + R Sbjct: 272 -PPLPQGVLTGGYHGNWIDAVSSHNAVVSRESLATVGGALGAGAILPIGPDTCPLGESLR 330 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + E+ GQC PC+ G + ++ G ++ L EV++ ++GR C D Sbjct: 331 IANWLAAETAGQCGPCKLGLPAAAGGLSDVLNGGG-PAALEALREVTQAVKGRGACKHPD 389 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A + + F + + Sbjct: 390 GSARFLLSTLSAFTDDLAAHV 410 >gi|284164323|ref|YP_003402602.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] gi|284013978|gb|ADB59929.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] Length = 565 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 96/433 (22%), Positives = 171/433 (39%), Gaps = 44/433 (10%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF----S 61 R+ + S+ D ++ ++ D ++ V+ GL GRG + Sbjct: 142 RRVLGRCGWVDPASVPD-------ESAAELAGDDPDEALSRVRDVGLLGRGRGDWSVDDP 194 Query: 62 TGMKWSFMPKVCSD---------RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 +W + ++ +VVN +ES+ DR ++ P +++G + Sbjct: 195 VAEEWELAREAAAEGADEGDSEADEPVVVVNGNESDDRNATDRTLLEAAPGEVLDGALAV 254 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 + +GA +Y R RE + A + + G V G YI Sbjct: 255 AELVGADDVVVYCNENDDRARERVHEAARNAEERFAERLDRESGP----EVVVGPDRYIA 310 Query: 173 GEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 GE T LE++EG + + RL+PP PA GLYG PT V+ ++A V L + + Sbjct: 311 GEPTMALEAMEGNDRLEARLRPPSPAEHGLYGRPTIVHTPRTMAQVRRALLAPDEFDAD- 369 Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 + + GT+LF+++G V+ TVE + ++ E R GG Sbjct: 370 --DADPGTRLFTVTGDVDAAATVELPTGGSLADVRETVDLEGR-----FKMACVGGQFGG 422 Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 R G+ LGT V+ +++ ++ R + F E+CG+C Sbjct: 423 F-----TRSLSQSPSAPALEGAELGTEGVVELLNEDNCVLATAGRRANFAMEENCGRCVT 477 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 CREG+ + ++ + G Q +I E+++ + +IC G A P ++ F Sbjct: 478 CREGSQELTNMLRDIYDGQYQDAKI---RELTRVMGETSICQFGRTAIRPAVTGMREFER 534 Query: 411 LIEERIDQYHRCN 423 + + RC Sbjct: 535 EVAAHTE--GRCP 545 >gi|108744325|gb|ABG02411.1| HtxX [Xanthobacter flavus] Length = 496 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 107/387 (27%), Positives = 172/387 (44%), Gaps = 31/387 (8%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ +D + G + + +++ ++ ++ A GR G GF G KW + + Sbjct: 119 ARTFADYRAAGGYGQLRRVMADPGAAARMLAQLSAHQAVGRAGVGFPVGEKWRQVM--AA 176 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 ++VN DE E KDR I+ +PH ++E ++A+ GA F+YVR ++ Sbjct: 177 GGTPVVIVNGDEGELAIFKDRFILETDPHGVLEAALVAARVTGADLVFLYVRDDYAPIHA 236 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ A++E A+GL + + + GA+ICGEETAL+ SLEG+ +P +PP Sbjct: 237 IVRRALEEVAAAGLAE-------GIGLELRRSGGAFICGEETALIASLEGRAARPTERPP 289 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN----RGTKLFSISGHVNY 250 FP G G PT ++NVE+ R A+W G + +LFS+SG V Sbjct: 290 FPTTRGYLGRPTLLHNVETF------YRLTAAWGGTPGSPASVLLDPQVRLFSVSGRVCA 343 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P +L+E G L ++ GGSS + A R + L Sbjct: 344 PGPKPVRGLSRLADLVEIAGGM--QNGHALGGLVIGGSSGTLVGAADCRRPL---ADLLA 398 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 G LGT IV + R++ + ESCGQC PCR GT R++ Sbjct: 399 EGLRLGTGGAIVFGADDEPRAIAARMAAYLARESCGQCGPCRIGTAHAARILAAPGPLDL 458 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAA 397 +++ + ++CALG A Sbjct: 459 PLL-----DDLATVMGEGSLCALGRNA 480 >gi|307328405|ref|ZP_07607581.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Streptomyces violaceusniger Tu 4113] gi|306885978|gb|EFN16988.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Streptomyces violaceusniger Tu 4113] Length = 504 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 160/381 (41%), Gaps = 26/381 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKD 94 D ++ + LRGRGGAGF K + + R +VVN E EPG KD Sbjct: 40 ALRADELVALAENIDLRGRGGAGFPFATKVQAVVESAGRREGRCAVVVNGSEGEPGCLKD 99 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 ++ H PH +I+G V+A+ A+GA I V + ES+ AA+ E SG Sbjct: 100 TALLLHTPHLVIDGAVLAAEALGAEEVAIAVHRADVE--ESVAAAIAERGPSG------- 150 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 V + V+ ++ GE A++ + G P + ++ GL G PT ++N E+ Sbjct: 151 ----VPVSVNRTPDRFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLSGLPTLLSNTETF 206 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 A + R GA Y G GT L ++ G +E + ++E Sbjct: 207 AQLAVAARMGALPYRSVGLPTEPGTTLLTVGGKY----VMETPTGVPLTYVLELCGLTPG 262 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 AV+ GG L + A + + +K+ G+ LG AV+ + +T + Sbjct: 263 ------QAVLVGGYHGKWLDPRSINAATISRESMKKYGARLGAGAVLPIPENTCPLGETA 316 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 R++ + E+ GQC PC G + + ++ +G Q ID + ++ GR C+ Sbjct: 317 RVARWLAAETAGQCGPCFIGLPALADAIGQVERGGGQSS-IDNVRAYVNSVRGRGACSHP 375 Query: 395 DAAAWPIQGLIKNFRPLIEER 415 D A + + F E Sbjct: 376 DGTAGFVTTALDAFPEEFEAH 396 >gi|189308114|gb|ACD86941.1| mitochondrial NADH dehydrogenase [Caenorhabditis brenneri] Length = 190 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 112/177 (63%), Positives = 140/177 (79%) Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 SG VN PCTVEE MS+ +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P +MD Sbjct: 1 SGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDTVLMD 60 Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 +D L SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG W+ ++M R Sbjct: 61 FDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNKMMWR 120 Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V G A+ EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H+ Sbjct: 121 FVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFHK 177 >gi|86741278|ref|YP_481678.1| respiratory-chain NADH dehydrogenase domain-containing protein [Frankia sp. CcI3] gi|86568140|gb|ABD11949.1| NADH dehydrogenase subunit F [Frankia sp. CcI3] Length = 510 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 103/429 (24%), Positives = 161/429 (37%), Gaps = 63/429 (14%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSF------------------------------ 68 G ++ E+ SGL GRGGA F T K + Sbjct: 93 GPGRLLPEIHDSGLTGRGGAAFPTWRKLAASAEGTCLDGSHSGSAHRGSTHRGSQHRNAG 152 Query: 69 --MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 + S +V NA E EP + KD ++ PH +++G +A+ A+GA AF+Y++ Sbjct: 153 HRADRYRSSAHPVVVANAAEGEPESAKDVTLLTVAPHLVLDGLQLAAEAVGADDAFVYLK 212 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGK 185 L G+D + + ++ GE +A++ +LEG Sbjct: 213 PG-----------PAVTAVRRALAQRRAAGWDRFTVQIREAPETFVAGEASAVIAALEGG 261 Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 +PR A G +G PT V N E++A + I R GASW+ G GT L +++ Sbjct: 262 AARPRAHWQPLAEAGFHGRPTLVQNAETLAHLALIARWGASWFRSVGTAEEPGTFLATVT 321 Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 G V P VE L + G + + A GG S LP G M Sbjct: 322 GAVAAPGVVEVPFGTPLGTLAQLAGG----FTEQVGAFRVGGYSGAWLPGGPGATIAMSR 377 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 L G+ GT V V+ + R+ + ++ GQC PC G + + + Sbjct: 378 AALAPWGAAPGTGVVAVLPARGCGLVETARIVGYLAAQNAGQCGPCVSGLPQLADAVAGM 437 Query: 366 VK------------GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 + G + I L ++ + GR C D AA + ++ F I Sbjct: 438 ARTDGGSGGPVQGAGDPGQSAIRALR-LAALVAGRGACHHPDGAARLVHSALRTFVDDIR 496 Query: 414 ERIDQYHRC 422 + RC Sbjct: 497 AHAE--GRC 503 >gi|297199617|ref|ZP_06917014.1| oxidoreductase [Streptomyces sviceus ATCC 29083] gi|197713457|gb|EDY57491.1| oxidoreductase [Streptomyces sviceus ATCC 29083] Length = 505 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 166/381 (43%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 G + + +A L+GRGGAGF K + + +VVN E EP KD Sbjct: 12 MGGEQLAKLSEAINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 71 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++A+ A+GA I V E + S++AA+ E G ++ Sbjct: 72 VLINRAPHLILDGALLAAEALGARTLVIGVTRESTQ--RSMEAALAER------GLSNGR 123 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + V + G +L+ S++G P + + G+ G PT ++N E+ A Sbjct: 124 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFA 183 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT + ++SG V P +E + +++ Sbjct: 184 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 239 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + A + AI+ + L +G LG A++ + + T + R Sbjct: 240 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQETCPLGESLR 298 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + ES GQC PC G R ME ++ G ++ L +V+KN++ R C+ D Sbjct: 299 VAQWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKNVKRRGACSHPD 357 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A ++ IK F + + Sbjct: 358 GSAMFLESTIKAFTDDLAAHV 378 >gi|289807699|ref|ZP_06538328.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 211 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226 AG YICGEETAL+ SLEG++ PR KPPFPA G++G PT VNNVE++ VP IL G Sbjct: 7 AGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVE 66 Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286 WY + + GTKL SG V P E E++E + GG+R G A PG Sbjct: 67 WYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGLK-FKAWQPG 125 Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346 G+ L + M+++ + + GS LGTA + +D ++ + L F+ ESCG Sbjct: 126 GAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCG 184 Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKR 373 CTPCR+G W ++++ L +G Q Sbjct: 185 WCTPCRDGLPWSVKILRALERGEGQPG 211 >gi|190345481|gb|EDK37373.2| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC 6260] Length = 243 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 122/177 (68%), Positives = 148/177 (83%) Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 SGHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIPGGSSVP +P +M Sbjct: 35 FSGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPVMPKHVCDNVLM 94 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W+ R+M+ Sbjct: 95 DYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESCGQCTPCREGTTWLQRMMD 154 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRPL+ ER+ QYH Sbjct: 155 RFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPLMVERMQQYH 211 >gi|254383432|ref|ZP_04998783.1| oxidoreductase [Streptomyces sp. Mg1] gi|194342328|gb|EDX23294.1| oxidoreductase [Streptomyces sp. Mg1] Length = 481 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 157/377 (41%), Gaps = 27/377 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIM 98 D +I+ +A LRGRGGAGF K + + + +VVNA E EP KD ++ Sbjct: 45 DDLIDLAEAIDLRGRGGAGFPFHRKLRAVMRSARAKEGRSAVVVNASEGEPSCLKDTALL 104 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H PH +++G +A+ A+GA + V + + S++ A+ E G Sbjct: 105 LHVPHVVLDGAQLAADALGAEDVVVGVTRDDVE--RSVRDAIAER------------GPG 150 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + V ++ GE T+++ +EG P + + GL G PT ++N E+ A + Sbjct: 151 TRLRVSRLPERFVTGEGTSMINGIEGNPAVPNGQKVRTSERGLTGLPTLLSNTETYAQLA 210 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 R GA+ Y+ G GT + ++SG VE + ++E Sbjct: 211 IAARLGAAGYNSVGLPAEPGTLMLTVSGATA----VEIPSGTSLAYVLELCGSSPG---- 262 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 V+ GG L A++ L + LG AV+ + T + R++ Sbjct: 263 --QGVLVGGYHGRWLTPEDASQALLSRQSLAAFDAVLGAGAVLPLPEDTCPAGEVARVTR 320 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 + E+ GQC PC G + +E++V G + + + + + GR C+ D + Sbjct: 321 WMADETAGQCGPCVRGLPSLATAVEQMVAGGGRAT-FEAVEARMRAVRGRGACSHPDGTS 379 Query: 399 WPIQGLIKNFRPLIEER 415 + + F + + Sbjct: 380 GFVASALNVFADELRDH 396 >gi|146419679|ref|XP_001485800.1| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC 6260] Length = 243 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 121/177 (68%), Positives = 147/177 (83%) Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 GHVN PCTVEE MSI EL+EKHCGG++GGWDNLL VIPGGSSVP +P +M Sbjct: 35 FLGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPVMPKHVCDNVLM 94 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W+ R+M+ Sbjct: 95 DYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESCGQCTPCREGTTWLQRMMD 154 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRPL+ ER+ QYH Sbjct: 155 RFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPLMVERMQQYH 211 >gi|164430970|gb|ABY55757.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila silvestris] Length = 222 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 1/174 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + RG W +I+ KG +WIINEVK SGLRGRGGAGF Sbjct: 49 LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPEWIINEVKTSGLRGRGGAGFP 108 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 +GMKWSFM K RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA A+GA A Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174 +IY+RGEF E ++Q A+ E Y +GL+G ++ GY+ D+ +H GAGAYICGE Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYNFDVFMHRGAGAYICGE 222 >gi|329912138|ref|ZP_08275695.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae bacterium IMCC9480] gi|327545684|gb|EGF30831.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae bacterium IMCC9480] Length = 274 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 92/254 (36%), Positives = 139/254 (54%), Gaps = 12/254 (4%) Query: 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGA 225 GAGAYICG+ETAL+ESLEGK+G PR+KPP+P N+G G PT+ NNVE+ A V I+ GA Sbjct: 2 GAGAYICGDETALIESLEGKRGTPRVKPPYPVNMGYLGKPTSANNVETFAAVAAIIEHGA 61 Query: 226 SWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285 SW+ G + GT+L SISG + P E + IT +++ K G R W AV Sbjct: 62 SWFKAMGTAESTGTRLLSISGDCSAPGIYEIAWGITLADVLAKA--GARDPW----AVQV 115 Query: 286 GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC 345 G S C+ + + + L GS + + DRS D++ + + F+ +ESC Sbjct: 116 SGPSGDCVSVEKDGQRAIALEDLSCNGSFM------IFDRSRDLLDIVSQFMQFFVNESC 169 Query: 346 GQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 G C PCR G + + + R++ G A ++++D + K + + C LG + PI + Sbjct: 170 GICVPCRSGNVDLFKKINRVIDGKACQKDLDEVVVWGKLVRKTSRCGLGGTSPKPILTTL 229 Query: 406 KNFRPLIEERIDQY 419 +NF L ++ + Sbjct: 230 QNFPELYAAKLVKQ 243 >gi|302540307|ref|ZP_07292649.1| putative oxidoreductase [Streptomyces hygroscopicus ATCC 53653] gi|302457925|gb|EFL21018.1| putative oxidoreductase [Streptomyces himastatinicus ATCC 53653] Length = 497 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 151/381 (39%), Gaps = 26/381 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS--DRPHYLVVNADESEPGTCKD 94 D ++ + LRGRGGAGF K + + + +VVN E EP KD Sbjct: 33 ALRADELVALAENIDLRGRGGAGFPFAKKVTAVVEAAGRAGGRCNVVVNGSEGEPSCLKD 92 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 ++ H PH +I+G +A+ AIGA I ESL AA+ E SG Sbjct: 93 TALLLHTPHLVIDGATLAAEAIGAEEVVIACHR--PDVEESLNAAIAERGPSG------- 143 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 V + V ++ GE A++ + G P + + GL G PT ++N E+ Sbjct: 144 ----VPVEVSVTPDRFVAGEGGAVINGISGAPAIPNGRKIRSSENGLGGLPTLLSNTETY 199 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 A + R GA Y G GT L ++ G +E + ++E Sbjct: 200 AQLAVAARMGALPYRSVGLPTEPGTTLLTVGGKY----VMETPTGVPLTYVLELCGLTPG 255 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 V+ GG L + A + + +K+ G+ LG AV+ + T + Sbjct: 256 ------QGVLVGGYHGKWLDPKSIGAATISRESMKKYGARLGAGAVLPIPEDTCPLGETA 309 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 R++ + E+ GQC PC G + + ++ +G Q ID + ++ R C+ Sbjct: 310 RVARWLAAETAGQCGPCFIGLPALADAIGQVERGGGQSS-IDNVRAYINSVRKRGACSHP 368 Query: 395 DAAAWPIQGLIKNFRPLIEER 415 D A + + F E Sbjct: 369 DGTAGFVTTALDAFPEEFESH 389 >gi|323168546|gb|EFZ54226.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella sonnei 53G] gi|323171966|gb|EFZ57610.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia coli LT-68] Length = 248 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 101/232 (43%), Positives = 138/232 (59%), Gaps = 7/232 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 P YG N S P + R +S + G +R K+ + S Sbjct: 202 P-SRQPPAYGA----NRPVSTTSKPCVTFRRSSLTAWSGIRTSRKVKMLAPS 248 >gi|110667102|ref|YP_656913.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM 16790] gi|109624849|emb|CAJ51258.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM 16790] Length = 502 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 171/424 (40%), Gaps = 42/424 (9%) Query: 2 LTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L D+ R+ + + ++ D + G + + I D + + ++ RG G A Sbjct: 108 LQDESRRVLSGSGWRRPANVDDYDAAGGF--LKDI---DPDAVFDAGESIHGRGWGDACH 162 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 + + ++M ++ +V+NA S PG D ++ P T+++G V + + A Sbjct: 163 DSPLTKTWMDADDAEGEAAIVINA-HSNPG---DSLLLSSVPFTILDGAVSLAQTVDASE 218 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180 I+ E+ + A+D + I + G Y E T LE Sbjct: 219 IVIFASIADESTIETARTAID----------RYPNESSIAIDLVTGPAEYRAAEPTMALE 268 Query: 181 SLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 ++EG + + RL+PP P +VGLYG PT ++ ++A + LR + +++ T Sbjct: 269 AIEGNHRLEARLRPPGPESVGLYGRPTLIHTARTLAHLAVSLREDS-------IDSHPST 321 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 ++ SI G V +E + T E C D + A GG Sbjct: 322 RIMSIEGDVTDRTIIEVPETTTL----ETVCA-AADTTDGIKAACVGGRFGGL---AADL 373 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 +D + L + G V V+ +++ + + F E+CG+C PCREGT + Sbjct: 374 DISVDPETLIDANLGTE-GIVHVLSEDRCVVEFVGERAQFAAEENCGRCVPCREGTTQLA 432 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ L G Q ID E+ + + +IC G A P Q + F E + Sbjct: 433 ELLRSLYDGTYQPEAID---ELIRVMTTTSICEFGVNAGRPTQTALNAFESEFEAHAN-- 487 Query: 420 HRCN 423 RC Sbjct: 488 GRCP 491 >gi|331663799|ref|ZP_08364709.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] gi|331059598|gb|EGI31575.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] Length = 248 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 101/232 (43%), Positives = 138/232 (59%), Gaps = 7/232 (3%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+N+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A+ E +GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++ PR KP Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 P YG N SI P + R + + G +R K+ + S Sbjct: 202 P-SRQPPAYGA----NRPVSITSKPCVTFRRSLLTAWSGIRTSRKVKMLAPS 248 >gi|297162339|gb|ADI12051.1| oxidoreductase [Streptomyces bingchenggensis BCW-1] Length = 503 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 154/381 (40%), Gaps = 26/381 (6%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS--DRPHYLVVNADESEPGTCKD 94 D ++ + LRGRGGAGF K + + + D +VVN E EP KD Sbjct: 43 ALRADELVALAENIDLRGRGGAGFPFAKKVTAVIESAGRRDGRCAVVVNGSEGEPSCLKD 102 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 ++ H PH +I+G V+A+ A+GA I V ESL AA+ E SG Sbjct: 103 TALLLHTPHLVIDGAVLAATAMGADDVAIAVHR--PDVEESLSAAIAERGPSGP------ 154 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 + V ++ GE A++ + G P + ++ GL G PT ++N E+ Sbjct: 155 -----RVQVSVTDDRFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLAGLPTLLSNTETF 209 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 A + R GA + G GT L ++ G +E + ++E Sbjct: 210 AQLAVAARMGALPFRSVGLPTEPGTTLLTVGGKF----VMETPFGVPLSYVLELCGLTPG 265 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 V+ GG L + + + +++ + LG AV+ + +T + Sbjct: 266 ------QGVLVGGYHGKWLLPDSLASVNISRESMEKYNARLGAGAVLPIPENTCPVGETA 319 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 R++ + E+ QC PC G + + ++ +G Q +D + ++++ R C+ Sbjct: 320 RVARWLAGETANQCGPCFIGLPALADAIGQVERGGGQAA-LDTVSAYIESVKRRGACSHP 378 Query: 395 DAAAWPIQGLIKNFRPLIEER 415 D A + + F E Sbjct: 379 DGTAGFVTTALDAFPDEFREH 399 >gi|222873938|gb|EEF11069.1| predicted protein [Populus trichocarpa] Length = 251 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 130/242 (53%), Gaps = 9/242 (3%) Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 +LES+EG++G R KPP PA GL+G PT +NNV ++A VP IL RGA++Y GFG +R Sbjct: 1 MLESIEGRRGIVRSKPPLPAIEGLWGRPTVINNVITLATVPLILARGAAFYQGFGMGRSR 60 Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297 GT F ++G++ VE++ ++ EL+E GG G + AV GG + Sbjct: 61 GTLPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATG-RTVKAVQVGGPLGSYVAPAD 119 Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 A +DY+ G+ +G ++V D + D+ + F ESCG+CTPCR G+ Sbjct: 120 -WDAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTR 178 Query: 358 MMRVMERLVKGIAQKR-------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 + V++R+V+ + ++ LL + ++ ++CA+G +P++ + ++ Sbjct: 179 GVEVIDRIVRAGSDPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHYPQ 238 Query: 411 LI 412 Sbjct: 239 DF 240 >gi|313127332|ref|YP_004037602.1| NADH dehydrogenase subunit f [Halogeometricum borinquense DSM 11551] gi|312293697|gb|ADQ68157.1| NADH dehydrogenase subunit F [Halogeometricum borinquense DSM 11551] Length = 513 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 155/398 (38%), Gaps = 34/398 (8%) Query: 30 DNVDKILEKGRDWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 ++V + + + E+ GL RGRG A + + +D LVVNA+++ Sbjct: 136 ESVLDAVSDDSESVCTEIHRIGLLGRGRGDARADRPVAEGWATARKTDGDTVLVVNANDA 195 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 + D ++ + +++ + + + A +Y + + AA G Sbjct: 196 DERNRTDSTLVEGDAGGVVDAAMAVAHLVEAEDVIMYAQTGSMAAERLSAAASRYRDEYG 255 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPT 206 V G YI GE T LESLEG + + RL+PP P GLYG PT Sbjct: 256 DAP-----------QVAVGPERYIAGEPTMALESLEGNDRLEARLRPPGPETHGLYGRPT 304 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 ++ ++ V + R + + + + GT++ +++G V+ P TVE + Sbjct: 305 VIHTPRTLLQVREAILRPEEFDAD---DADPGTRVVTVTGDVDSPATVELTTGAPLR--- 358 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI-VMDR 325 I GG + + L G+ LGT V+ + Sbjct: 359 ---AAAAAVDRTETKMAIVGGQFGGV---TRHLDHTLSAPALS--GANLGTEGVVELFGD 410 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 + + + F E+CG+C PCREGT + ++ + G D L E+++ + Sbjct: 411 DRCALATVGSRARFASEENCGRCVPCREGTTQLTDLLRDIYAGDYDD---DTLRELTRTM 467 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + C G +AA ++ + F E + RC Sbjct: 468 RNTSTCDFGRSAARTVETAMAAFEAEFEAH--THGRCP 503 >gi|268323918|emb|CBH37506.1| putative Fe-only hydrogenase, C-terminus [uncultured archaeon] Length = 211 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 6/216 (2%) Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PT +NNVE++ VPTI+ +G WYS G N GTKLF ISGHVN P E M +T Sbjct: 2 GKPTAINNVETLCNVPTIIEKGGDWYSKIGSPNAPGTKLFCISGHVNKPGVYEIPMELTL 61 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 ELI+ + GG++G AV+PGG S L +DY + E GS LG+A+VIV Sbjct: 62 RELIDNYGGGVKG---KFKAVLPGGVSSSLLTD---LDVKLDYKSVAEAGSMLGSASVIV 115 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 ++ + I+ F+ HESCGQCTPCREGT ++ R G ++ E+++L E+ Sbjct: 116 INGDSSIVDVTKNSMEFFVHESCGQCTPCREGTRTANAIIGRFANGEGREEELEILLELG 175 Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + + C LG AA IK FR +R+ Sbjct: 176 DVMYDTSRCGLGQAAMNITTSAIKMFRDEFMQRVKN 211 >gi|320010870|gb|ADW05720.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Streptomyces flavogriseus ATCC 33331] Length = 524 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 154/381 (40%), Gaps = 16/381 (4%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 + + ++ LRGRGGAGF G K + K +V+N E EP KD Sbjct: 44 MTGERLAELAESVSLRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDT 103 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G ++A+ A+GA + V A G + + Sbjct: 104 VLLNRAPHLILDGALLAAEALGARTLVVAVTRNSTEMSVRSALAER--------GLSDRR 155 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 G + V + GE +A++ ++ G P + A G+ G PT ++N E+ A Sbjct: 156 GQHLRARVVRTPERMVSGEASAVIRAVNGGPALPPGRRERAAESGVAGAPTLLSNAETYA 215 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y G + GT L ++SG V P VE + +++ Sbjct: 216 QLAVAARLGPRRYGHTGLADEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLQLAGA---- 271 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 V+ GG + + + A++ L +G LG AV+ + T I R Sbjct: 272 -PPLPQGVLTGGYHGNWIDSTALHDAVVSRASLAAVGGALGAGAVLPIGPETCPIGESLR 330 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 ++ + E+ GQC PC+ G + ++ G ++ L EV++ ++GR C D Sbjct: 331 IANWLAAETAGQCGPCKLGLPAAAGGLSDVLNGGG-PAALEALREVTQAVKGRGACKHPD 389 Query: 396 AAAWPIQGLIKNFRPLIEERI 416 +A + + F + + Sbjct: 390 GSARFLSSTLSAFTDDLAAHV 410 >gi|218661814|ref|ZP_03517744.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli IE4771] Length = 187 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 78/190 (41%), Positives = 109/190 (57%), Gaps = 3/190 (1%) Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295 + G KL+ +SG V+ P E M I EL+E H GG+ + AVIPGG S P +P Sbjct: 1 SPGPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPE 59 Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355 + MD+D L GS LG+A VIV+D ST ++K R+ F+ HESCG+CTPCREG Sbjct: 60 HGLE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGL 118 Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 W ++V+ R+ G +++ L + K I G T CALGD AA ++ + +FR Sbjct: 119 NWTVKVLRRIEAGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVAH 178 Query: 416 IDQYHRCNFQ 425 I++ HRC F Sbjct: 179 IEE-HRCPFH 187 >gi|238596288|ref|XP_002394009.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553] gi|215462351|gb|EEB94939.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553] Length = 245 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 108/203 (53%), Positives = 130/203 (64%), Gaps = 20/203 (9%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTN Y L + SRG W IL KG WII +K SGLRGRGGAGF Sbjct: 37 LKDQDRIFTNAYCRHDHGLKGAQSRGDWHRTKDILLKGDSWIIQTIKDSGLRGRGGAGFP 96 Query: 62 TGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 +G+KWSFM K YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+ A Sbjct: 97 SGLKWSFMNKPNWQNDKRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 156 Query: 119 HCAFIYVRGEFIRE----------------RESLQAAVDECYASGLLGSNS-KLGYDVDI 161 + A+IY+RGEF +E +Q A++E YASGL+G N+ GY D+ Sbjct: 157 NAAYIYIRGEFYQEGTYSGFSLHIILTVCPASHVQQAINEAYASGLIGKNACGSGYSFDV 216 Query: 162 IVHHGAGAYICGEETALLESLEG 184 +H GAGAYICGEETAL+ESL G Sbjct: 217 YLHRGAGAYICGEETALIESLXG 239 >gi|284172809|ref|YP_003406191.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] gi|284017569|gb|ADB63518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] Length = 507 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 89/389 (22%), Positives = 152/389 (39%), Gaps = 36/389 (9%) Query: 41 DWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + V GL RGRG A + + +D +V NA+E+ D ++ Sbjct: 141 ERTAETVTDIGLLGRGRGDAAADDPVTDVWETARDADGDPVVVANANETRDEQRADEVLL 200 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 P +++G + +GA A +Y+ E L+ A+D +G L Sbjct: 201 GGAPIAVLDGIAAVAEYVGADDAVVYLNEEDSHLHRHLREAIDAV--AGEL--------P 250 Query: 159 VDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 + + G Y G TA LE++EG + +PRL+PP PA GLYG PT ++ + A V Sbjct: 251 IVPQLVAGPDEYRAGAPTAALEAMEGADRIEPRLQPPSPAEYGLYGRPTVIHTPRTFAQV 310 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF---DELIEKHCGGIR 274 +R + + GT+L +++G V P T+E + + +E Sbjct: 311 RRAIRDSD---AFDADAADPGTRLITVAGDVADPATIELPSDSSLSVVRDAVELTG---- 363 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 + GG + L G G V +++ ++ + Sbjct: 364 ----SFKMACVGGVLGGITRS---LDVAPTAQSLAAAGLGTD-GVVELLNDDRCVVADVG 415 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 + F E+ G+C P REGT + ++ + +G E D + E+ + + + C +G Sbjct: 416 ERARFASTENSGRCVPGREGTKQLTELLRDVYQGSL---EADTIRELGRVMARSSNCQIG 472 Query: 395 DAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 A P+ I F P D RC Sbjct: 473 AHAPRPVTTAIDEFEPEFHAHAD--GRCP 499 >gi|213618598|ref|ZP_03372424.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 220 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 3/202 (1%) Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 P IL G WY + + GTKL SG V P E E++E + GG+R G Sbjct: 1 PAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL 60 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 A PGG+ L + M+++ + + GS LGTA + +D ++ + L Sbjct: 61 K-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLE 118 Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396 F+ ESCG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA Sbjct: 119 EFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 178 Query: 397 AAWPIQGLIKNFRPLIEERIDQ 418 A P+Q IK FR E I Q Sbjct: 179 AVEPLQSAIKYFREEFEAGIKQ 200 >gi|73982777|ref|XP_864298.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 4 [Canis familiaris] Length = 210 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 97/162 (59%), Positives = 116/162 (71%), Gaps = 1/162 (0%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++ A+GA A Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDII 162 +IY+RGEF E +LQ A+ E Y +GL+G N+ GYD D+ Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVQ 196 >gi|218671476|ref|ZP_03521146.1| formate dehydrogenase protein, beta subunit [Rhizobium etli GR56] Length = 283 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 101/187 (54%), Gaps = 3/187 (1%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59 L Q R+ F + SLSD + G + + + I+ EV SGLRGRGGAG Sbjct: 98 FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 157 Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG+KW + D Y+V NADE + GT DR IM +P LIEG I+ A GA Sbjct: 158 FPTGIKWKTVLDAAGD-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178 F+Y R E+ ++ AV +G+LG + G DI V GAGAY+CGEETAL Sbjct: 217 KGFVYTRSEYPHAIAAMSEAVAIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276 Query: 179 LESLEGK 185 L SLEGK Sbjct: 277 LNSLEGK 283 >gi|331663798|ref|ZP_08364708.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] gi|331059597|gb|EGI31574.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143] Length = 213 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%) Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284 WY + + GTKL SG V P E T E++E + GG+R G A Sbjct: 1 MEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLK-FKAWQ 59 Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344 PGG+ L + M+++ + + GS LGTA + +D +++ + L F+ ES Sbjct: 60 PGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARES 118 Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQG 403 CG CTPCR+G W ++++ L +G Q +I+ L ++ + + G+T CA A P+Q Sbjct: 119 CGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQS 178 Query: 404 LIKNFRPLIEERIDQ 418 IK FR E I Q Sbjct: 179 AIKYFREEFEAGIKQ 193 >gi|238060461|ref|ZP_04605170.1| oxidoreductase [Micromonospora sp. ATCC 39149] gi|237882272|gb|EEP71100.1| oxidoreductase [Micromonospora sp. ATCC 39149] Length = 382 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 ++ +A L+G+GGAGF K + + C D +VVNA E EP + KD+ Sbjct: 41 MEPANLLRLAEAIQLKGKGGAGFPFARKLRAVLESCERQDASAIVVVNATEGEPASWKDK 100 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G + ++A+ A I V + + R SL A+ E Sbjct: 101 VLLARAPHLILDGAALVAYALDADEIVIGVADDDV-GRPSLTEALQERR----------- 148 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 V + +I GE AL+ + G P ++ G+ G PT ++N E+ A Sbjct: 149 -MPVPTSMVTVPDRFISGEGGALVNGINGLPHIPPGTKKRSSDSGVNGLPTLLSNAETYA 207 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y+ G ++ GT L +++G P VE + +++E Sbjct: 208 QLAVAARLGPYEYAALGTDDEPGTLLLTVTGAAKRPAVVECAAGTPLRDILEL------C 261 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + V+ GG + A + A + GL +G LG ++ + R T + + Sbjct: 262 EVPDGPGVLMGGYHGKWITAEAAQRAEVSRKGLTAVGGTLGAGIIVPLGRDTCPLGEAAQ 321 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 + + ES GQC PC+ G + R ++ V G A I+++ + +++GR C+ D Sbjct: 322 VVRYLAGESAGQCGPCKMGLPDLARAVDLAVSGSAP---IEIVRAAAGDVKGRGACSHPD 378 Query: 396 AAAW 399 A Sbjct: 379 GTAR 382 >gi|289612446|emb|CBI60107.1| unnamed protein product [Sordaria macrospora] Length = 175 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 121/163 (74%), Positives = 136/163 (83%) Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 MSI F ELIEKHCGG+RGGWDNLL VIPGGSSVP + A + A MD+DGLK +GSGLGT Sbjct: 1 MSIPFRELIEKHCGGVRGGWDNLLCVIPGGSSVPLVKAEHIIDAPMDFDGLKAVGSGLGT 60 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377 AAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM RVMERL G A EID+ Sbjct: 61 AAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGTGWMWRVMERLRTGDADISEIDM 120 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420 L +V+K +EG TICALGDAAAWPIQGLIKNFRP IE RI++ Sbjct: 121 LQQVTKQVEGHTICALGDAAAWPIQGLIKNFRPEIERRINEKR 163 >gi|327243025|gb|AEA41131.1| putative bifurcating [FeFe] hydrogenase subunit 2 [Clostridium butyricum] Length = 199 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 4/199 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58 +Q R+ + + +S+ + ++ + V K L + II+E+ S LRGRGG Sbjct: 1 FYKNQTRVALEHCGHINAESIDEYIALDGYKAVTKALFDMTPSNIIDEISESSLRGRGGG 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF TG+KWS + K ++ Y+V N DE +PG DR +M EPH +IEG +IA A GA Sbjct: 61 GFPTGIKWSQVYKQ-NENDKYIVCNGDEGDPGAFMDRSMMEGEPHRIIEGMIIAGIATGA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177 H +IYVR E+ E L+ A+++ GLLG+N G+D +I + GAGA++CGE +A Sbjct: 120 HKGYIYVRAEYPLAVERLEKAIEQAENKGLLGNNILNSGFDFNIRISKGAGAFVCGEGSA 179 Query: 178 LLESLEGKKGQPRLKPPFP 196 L S+EG +G PR+KPP Sbjct: 180 LTTSIEGSRGMPRVKPPRT 198 >gi|302869187|ref|YP_003837824.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Micromonospora aurantiaca ATCC 27029] gi|315504336|ref|YP_004083223.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Micromonospora sp. L5] gi|302572046|gb|ADL48248.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Micromonospora aurantiaca ATCC 27029] gi|315410955|gb|ADU09072.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Micromonospora sp. L5] Length = 488 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 159/380 (41%), Gaps = 24/380 (6%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 ++ +A L+G+GGAGF K + + C D +VVNA E EP + KD+ Sbjct: 42 MEPAALLRLAEAIDLKGKGGAGFPFARKLRAVLESCERQDLGAVVVVNATEGEPASWKDK 101 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 ++ PH +++G +A+FA+ A I V + + R SL A+ E Sbjct: 102 VLLTRAPHLILDGAALAAFALDAEEIVIGVADDDV-GRPSLTEALQERR----------- 149 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 V + +I GE AL+ + G P ++ G+ G PT ++N E+ + Sbjct: 150 -MPVPTTIVTVPHRFISGEGGALVNGINGLPHIPPGTKKRSSDSGVGGLPTLLSNAETYS 208 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y+ G ++ GT L +++G P VE + E+++ Sbjct: 209 QLAVAARIGPYEYAALGTDDEPGTVLLTVTGSAKRPAVVECAAGTPLREILDL------C 262 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 ++ GG + A A + GL +G LG ++ + T + + Sbjct: 263 EVPPGPGILMGGYHGKWITAAAAERAEVSRKGLTAVGGTLGAGIIVPLGADTCPLGEAAQ 322 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 + + ES GQC PC+ G + R ++ V G A ++L+ + +++GR C+ D Sbjct: 323 VVRYLAGESAGQCGPCKMGLPDLARSVDLAVSGSAP---VELVRAAAGDVKGRGACSHPD 379 Query: 396 AAAWPIQGLIKNFRPLIEER 415 A ++ F + Sbjct: 380 GTARFALSAMEVFADDLRLH 399 >gi|323718238|gb|EGB27418.1| hypothetical protein TMMG_02285 [Mycobacterium tuberculosis CDC1551A] Length = 217 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 103/188 (54%), Positives = 131/188 (69%), Gaps = 7/188 (3%) Query: 16 QGKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72 + +L+ + + K L D +I+ VK SGLRGRGGAGF+TG KWSF+P+ Sbjct: 20 ESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQG 79 Query: 73 CSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129 + +PHYLVVNADESEPGTCKD +M PH LIEG +IA++AI AH AF+YVRGE Sbjct: 80 DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEV 139 Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 + L AV E YA+G LG N G+D++++VH GAGAYICGEETALL+SLEG++GQ Sbjct: 140 VPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 199 Query: 189 PRLKPPFP 196 PRL+PP P Sbjct: 200 PRLRPPSP 207 >gi|269125013|ref|YP_003298383.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183] gi|268309971|gb|ACY96345.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183] Length = 505 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 91/408 (22%), Positives = 158/408 (38%), Gaps = 51/408 (12%) Query: 30 DNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-------------- 74 + L + ++ +A +RGRGGA F K + K Sbjct: 30 RALHGALAVPTLEELLKITEAVDIRGRGGAAFPFARKLMAVAKQVGRPGDVDDFLLPGEE 89 Query: 75 -------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + +VVN E EPG+ KD+ ++ PH +++G IA+ A+G I + Sbjct: 90 DDHRGRRQKRAVVVVNGSEGEPGSKKDKVLLTRNPHLVLDGAQIAATALGTRDIVIAIED 149 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 E S++AA+ E + V +I GE A++ ++ G+ Sbjct: 150 E--TAARSMRAAIVERR--------------MPAEVVRLPERFISGESGAVIRAINGETP 193 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 P + A G+ G PT ++N E+ A + ++ G Y+ G ++ GT L ++ G Sbjct: 194 IPPGRKVRAAESGVDGRPTLLSNTETFAQLAVLVSLGPDLYASVGTDSEPGTTLLTVGGT 253 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 E + + + G V+ GG + R AI+ G Sbjct: 254 TVV----ECPLGTPLASVF------AQCGVQPGQGVLVGGYHGEWITPEAARTAIVSRAG 303 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367 + +G LG ++ + T ++ + R++ + +S GQC PCR G + R +E LV Sbjct: 304 FQAVGGSLGAGIILPLPEGTCPLREVARIASYMAGQSAGQCGPCRLGLPDLYRSLEALVD 363 Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415 G +L+ + GR C+ D A + F IE Sbjct: 364 GSGSP---ELVRRAAGIGRGRGACSHPDGTARFALSALNTFARDIEIH 408 >gi|169335144|ref|ZP_02862337.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM 17244] gi|169257882|gb|EDS71848.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM 17244] Length = 357 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 151/401 (37%), Gaps = 67/401 (16%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 + L D ++ G ++ K++ D +I+ +K + L R +WS Sbjct: 21 CGAVNPICLDDYVAFGGYEASSKVVNNEVD-VISILKDANLVARKKLNELCADRWS---- 75 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 V + +P D + PH ++E +I A I V E Sbjct: 76 ------GAETVVCETEDPMATLDLKVQTEAPHVIVEAMIIFMHVNNAKKGVIVVNDE--L 127 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 L AV + +GL D DIIV S++G K Sbjct: 128 AYNRLNKAVTDAKNAGL--------NDKDIIVSKV--------------SIDGLKE---- 161 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 N + +A V I++ + +G K +I G V P Sbjct: 162 ------------------NAQLLANVVAIVQN------SYKPAPAKGLKGVAIGGKVKNP 197 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E T+ +LIE+ GG G + G L + + +++ L Sbjct: 198 GVYEIEDGTTYRKLIEEIAGGATGKVKAIKV---GAPYGEYLSSD-ILDEKINFMSLMMN 253 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 G GTA ++V+D STD+ K I F + SCG+C PC+ GT M +++ +VKG A Sbjct: 254 GMVRGTALIVVLDESTDMAKEISDYLGFLLNVSCGKCFPCKVGTKRMDEMVKEVVKGNAT 313 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 K +++ ++ N+ T+C +G A P+ ++NFR Sbjct: 314 KENYNMIKSIAVNMNIGTLCPIGQKGAVPVLTALENFRDDF 354 >gi|325523856|gb|EGD02083.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49] Length = 292 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 78/195 (40%), Positives = 107/195 (54%), Gaps = 3/195 (1%) Query: 2 LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ F + S+ D + + L D + SGLRGRGGA F Sbjct: 99 LARQQRLTFARIGLTDPLSIDDYLRHDGLAGLKNALALDGDAACELLIESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + + Y+V NADE + GT DR IM +P+ LIEG +IA A GA Sbjct: 159 PAGIKWRTVRQARA-KQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATI 217 Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179 IYVR E+ +L+AA++ +G LG + + ++ V GAG+Y+CGEETALL Sbjct: 218 GHIYVRSEYPDAIATLEAAIERAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277 Query: 180 ESLEGKKGQPRLKPP 194 ESLEGK+G R KPP Sbjct: 278 ESLEGKRGVVRAKPP 292 >gi|300709462|ref|YP_003735276.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali B3] gi|299123145|gb|ADJ13484.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali B3] Length = 522 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 153/381 (40%), Gaps = 30/381 (7%) Query: 38 KGRDWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 + + +V A GL RGRG A + ++ ++ +VVN +E +P D+ Sbjct: 144 EDPGGLCEDVDALGLLGRGRGDARHDAPLASAWEATREAEGEPVVVVNGNEPDPAADADQ 203 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 +++ P +++G + + A+GA +Y E + A D + LG+ Sbjct: 204 LLLKSAPVAVLDGALTVAAAVGATDVVVYANEADDLALERCETAADAIDDA--LGA---- 257 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 + + G Y GE T LESLEG + + R PP P GL+G PT ++ ++ Sbjct: 258 ----TVQIASGPDEYRAGEPTMALESLEGADRIEARRTPPGPEEHGLFGRPTAIHTPRTL 313 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 A + T L S+ + + + GT++ ++ + TVE S + + Sbjct: 314 AQLRTALLSPESFDAD---DADPGTRIVTVVDDADR-ATVELSTGSSLQTAL------GA 363 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 ++ GG + + L G AV + D + + Sbjct: 364 VPAEDFKLACVGGCFGGF---TRTLDTPANAQSLDSANLGT-NGAVELFDGTRCTVALAG 419 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 + + F + +CG+C PCREG+ ++ ++ + G I E+++ + + C G Sbjct: 420 KRARFAREANCGRCVPCREGSKQLVALLREVYDGEYDSGSI---RELTRVMRRTSTCYFG 476 Query: 395 DAAAWPIQGLIKNFRPLIEER 415 AA+ P+ + F Sbjct: 477 RAASRPVTTAMDAFETEFTAH 497 >gi|55376869|ref|YP_134720.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui ATCC 43049] gi|55229594|gb|AAV45014.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui ATCC 43049] Length = 507 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 144/371 (38%), Gaps = 34/371 (9%) Query: 57 GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116 A + ++ +D +V NA+++ D ++ P +++G + + Sbjct: 159 DAAADEPVADTWETASETDGDPVVVCNANDASDLPTGDDTLLSGAPMAVLDGIAAVAEYV 218 Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEET 176 A A +YV + L+ A+D + V + G + GE T Sbjct: 219 DAGDAVVYVNESQTDVQADLREAIDAAADT----------LPVVPQLVAGPDEFRAGEPT 268 Query: 177 ALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 A LE+LEG + +PRL+PP PA GLYG PT V+ + A V + S + Sbjct: 269 AALEALEGADRIEPRLQPPSPAKRGLYGRPTVVHTPRTFAQVQQAVADPGSVDAD---AA 325 Query: 236 NRGTKLFSISGHVNYPCTVEESMSITF---DELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 + GT++ +++G V TVE S + + +E + GG Sbjct: 326 DPGTRIVAVAGDVADSATVELRSSASLAAVRKAVEMDG--------SFKMACVGGVLGGV 377 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 + M L+ G G V + D ++ + + + F E+ G+C P R Sbjct: 378 TRSLDMAPT---AQSLRAAGLGT-NGVVELFDTGRCTVETVGKRARFASMENSGRCVPGR 433 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 EGT + ++ + G E D + E+S+ + + C G A P+ I F P Sbjct: 434 EGTKQLAELLRDIYDGSF---ENDKIRELSRVMRQSSNCQTGAHAPRPVTTAIDEFEPEF 490 Query: 413 EERIDQYHRCN 423 D + C Sbjct: 491 RAHTDGH--CP 499 >gi|330469511|ref|YP_004407254.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Verrucosispora maris AB-18-032] gi|328812482|gb|AEB46654.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Verrucosispora maris AB-18-032] Length = 488 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 160/380 (42%), Gaps = 24/380 (6%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95 ++ + L+G+GGAGF K + + C D P +VVNA E EP + KD+ Sbjct: 43 MEPSSLLRLAEGIQLKGKGGAGFPFARKLRAVLESCERQDLPPVVVVNATEGEPASWKDK 102 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 I+ PH +++G +A+FA+ A + V + I R+SL A++E Sbjct: 103 VILTRAPHLILDGAALAAFALDAEEIVLCVADDLI-GRDSLMEALEERR----------- 150 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 V V +I GE AL+ + G P ++ G+ PT ++N E+ + Sbjct: 151 -MPVPTSVVTVPHRFISGEGGALVNGINGLPHIPPGTKKRSSDSGVNNLPTLLSNAETYS 209 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G Y+ G ++ GT L SI+G VE + E++E Sbjct: 210 QMAIAARLGPYEYAALGTDDEPGTVLLSITGAAKRHAVVECAAGTPLREILEL------C 263 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 ++ GG + A + GL +G LG ++ + T + + Sbjct: 264 EVPEGPGILMGGYHGKWITWEAANKAEVSRKGLAAVGGTLGAGIIVPLANDTCPLGEAAQ 323 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 + + ES GQC PC+ G + R ++ V G A ++++ + +++GR C+ D Sbjct: 324 VVRYLAGESAGQCGPCKRGLPDLARAVDLAVSGSAP---VEVVRAAAGDVKGRGACSHPD 380 Query: 396 AAAWPIQGLIKNFRPLIEER 415 + ++ F +++ Sbjct: 381 GTSRFALSAMEVFAEDLKKH 400 >gi|330945472|gb|EGH47027.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str. 1704B] Length = 204 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 111/175 (63%), Gaps = 2/175 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EP T KDR +M PH L+EG +I++ A+ A+ +I++RGE++ + Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149 Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188 L AV E A+GLLG N G+D ++ VH GAG YICGEETAL+ SLEG++G Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRGN 204 >gi|331694618|ref|YP_004330857.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] gi|326949307|gb|AEA23004.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] Length = 424 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 19/336 (5%) Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N E EP + KD ++ H PH +++G A+ A+GA A + V L+AAV Sbjct: 87 NGCEGEPASRKDAVLLHHSPHLVLDGLAAAADALGADDAILCVHTGEP-GLGDLRAAVAT 145 Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 V V Y+ EE+AL+ L G+ P PP PA G+ Sbjct: 146 RDDR------------VPARVVTVPRRYVASEESALVGYLSGRPALPTTTPPRPAERGVA 193 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 G PT V+NVE++A + I G W+ G + GT L + G + P E T Sbjct: 194 GRPTLVDNVETLAHLALIAHHGPDWFRRAGTSDLPGTLLVTTGGALRDPGVDEVPGGTTV 253 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 ++E G + + A++ GG L + + ++ ++ GS LG ++ Sbjct: 254 QAVLELAGG----PAEPVQAILSGGYGGAWLGIDALA-TPLTHEAMRSAGSALGVPTLLA 308 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE-IDLLYEV 381 + + L ES GQC PCR G + + + +V G + L Sbjct: 309 LPTRVCGLGQTAHLLDHLAAESAGQCGPCRFGLPAIAQDLRAIVHGSPGAPDAHARLQRR 368 Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 ++GR CA D + ++ ++ FR + + + Sbjct: 369 LGTVDGRGACAHPDGSVRLVRSALRVFRHDLHDHLR 404 >gi|111223357|ref|YP_714151.1| putative oxidoreductase [Frankia alni ACN14a] gi|111150889|emb|CAJ62594.1| Putative oxidoreductase [Frankia alni ACN14a] Length = 347 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 145/351 (41%), Gaps = 22/351 (6%) Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 +V NA E EP + KD ++ PH +++G +A+ A+GA AF+YV+ Q Sbjct: 2 PVVVANAAEGEPESAKDATLLAVAPHLVLDGVQLAAEAVGAADAFVYVKAGSAAAAAVRQ 61 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A + A+G I V ++ GE +A++ +L+G +PR A Sbjct: 62 AVAER-RAAGWD--------RCGIEVREAPATFLAGEASAVVAALDGAAARPRAHWRPLA 112 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 + GL G PT V+NVE++A + TI R GA W+ G + GT L +++G V P VE Sbjct: 113 DAGLRGRPTLVHNVETLAHLATIARWGAPWFRSVGTADEPGTLLVTVTGAVAGPGVVEVP 172 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 L+ G + + + AV GG + LP M +GL G+ G Sbjct: 173 CGTPLGALVGSRGGAV----EPVGAVRVGGYAGTWLPGAVAAAVPMSREGLASWGATPGP 228 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV---------KG 368 V V+ + R+ + ++ GQC PC G + R + + G Sbjct: 229 GIVSVLPAHACGLAETARIVAYLAGQNAGQCGPCVSGLPQLARSVAGVAGIAGRDTAPDG 288 Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + ++ + GR C D A + ++ F I + Sbjct: 289 ENPTQAASRALRLAALVAGRGACHHPDGVARLVHSALRTFAADIRAHAQGH 339 >gi|119718053|ref|YP_925018.1| respiratory-chain NADH dehydrogenase domain-containing protein [Nocardioides sp. JS614] gi|119538714|gb|ABL83331.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614] Length = 412 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 148/363 (40%), Gaps = 28/363 (7%) Query: 54 GRGGAGFSTGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 GRGGA F +K + R +VVN E EP + KD + PH +++G V Sbjct: 59 GRGGAAFPFEVKLRTAADRSRQGRRPVVVVNLSEGEPASAKDSALALTRPHLVLDGAVAT 118 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 ++A+GA + V E +++AA+ E + +H G ++ Sbjct: 119 AYALGARELHVVVPQERPLVGTAIRAALAERRDR------------LRTHLHTAQGRFVA 166 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 G+ A+LE + G+ P A G G PT ++N E+ A V ++ G Y+ G Sbjct: 167 GQARAVLELMAGRPNLPVTAWSPEAVAGHRGRPTLLSNAETWAQVGRLVLAGEERYAALG 226 Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 + GT L ++S + VE + + +++ + G +++ GG Sbjct: 227 SADEPGTTLLTLSAATST--VVEVELGSPWRDVLPEAWAG--------RSLLVGGFHGAW 276 Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 +P + + D ++ + LG +V+ + R+ + +S +C PC Sbjct: 277 VPWATLVAGRVSVDAMRAAETPLGAG--VVVAPRGCPVAFTARVVDYLAAQSARRCGPCL 334 Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 G + R ++ +V G + + ++ + GR CA D A ++ ++ F + Sbjct: 335 NGLPALARAVQEVVDGAGHP---ERVEGLAALVTGRGACAHPDGTARLVRSMLATFPDEV 391 Query: 413 EER 415 Sbjct: 392 TRH 394 >gi|284167379|ref|YP_003405657.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] gi|284017034|gb|ADB62984.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Haloterrigena turkmenica DSM 5511] Length = 507 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 139/372 (37%), Gaps = 28/372 (7%) Query: 53 RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 RGRG A ++ +D +VVNA+E + DR ++ P +++G Sbjct: 155 RGRGDAIADEPAIDAWERARETDGDPLIVVNANEPDDRQQADRTLLAGAPIAVLDGVAAV 214 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 + +GA A +Y+ + ++ A L + G Y Sbjct: 215 AEYVGAEDAVVYLNEHETTLQRHVRQA-ANAIEDELPVVPDVV---------VGPDEYRA 264 Query: 173 GEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 G TA LE++EG + +PRL+PP PA GLYG PT V+ + A V + S + Sbjct: 265 GAPTAALEAMEGADRIEPRLQPPTPAEYGLYGRPTIVHTPRTFAQVRQAVHAPESIDAD- 323 Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 + GT+L +++G V P VE S T + ++ +L GG Sbjct: 324 --APDPGTRLVTVTGDVETPAIVELDSSATLETTLDAV-----SMEGSLKMACVGGVFGG 376 Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 G L G V ++ + + F + G+C P Sbjct: 377 FTTD---LGVAPTARSLTAADLGTD-GVVELLSDRRCAVATAGERAQFASEANSGRCVPG 432 Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411 REGT + ++ + G + D + E+ + + + C +G A P+ + F Sbjct: 433 REGTKQLTELLRDVYAGAFRS---DGIRELGRVMARSSNCQIGAHAPRPVTTAMDEFESE 489 Query: 412 IEERIDQYHRCN 423 + RC Sbjct: 490 FRAHAN--GRCP 499 >gi|292494173|ref|YP_003533316.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2] gi|291369052|gb|ADE01282.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2] Length = 479 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 89/424 (20%), Positives = 156/424 (36%), Gaps = 49/424 (11%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGG--AGFSTG 63 R+ L + + ++D+ + V +GL GRG A Sbjct: 91 RRVLGPCGWLDPLDPTAYQ----FHSLDR--------DASAVADAGLVGRGRCDAAADDP 138 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 + ++ +D +VVNA++++ DR ++ P ++++G + +G A I Sbjct: 139 VADAWRRARETDGDPVVVVNANDADDRQRADRTLLAGSPMSVLDGVAAVAEYLGTTEAVI 198 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 +V + L+ A+D + G Y GE TA LE++E Sbjct: 199 HVAETDTELQAHLREAIDAAADELPVVPVVVTG----------PDEYRAGEPTAALEAIE 248 Query: 184 G-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 G + +PRL+PP PA GLYG PT ++ + A V L G R+ T+L Sbjct: 249 GVDRTEPRLQPPTPAEYGLYGRPTVIHTPRTFARVRLALAD----PEGTDRDAASTTRLL 304 Query: 243 SISGHVNYPCTVEESMS---ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 +++G V P T+E T +E + GG + Sbjct: 305 TVTGDVAAPATIEVGSDARLSTARNAVELEG--------SFKMACVGGVFGGL---TRTL 353 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 L G G V +++ + + F + G+C P REGT + Sbjct: 354 DVESTAAELTAAGLGTE-GVVELLNDERCAVATAGERARFASEANSGRCVPGREGTVQLT 412 Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 ++ + +G + + E+ + + + C LG A P+ + F E D Sbjct: 413 ELLRAVYRGSF---DRAKIRELGRVMSRSSNCLLGAHAPRPVLTAMDEFESSFEAHAD-- 467 Query: 420 HRCN 423 RC Sbjct: 468 GRCP 471 >gi|296126170|ref|YP_003633422.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Brachyspira murdochii DSM 12563] gi|296017986|gb|ADG71223.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Brachyspira murdochii DSM 12563] Length = 386 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 130/340 (38%), Gaps = 30/340 (8%) Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 ++VNA + KDR ++++ PH +++G + + + I ++ + E++ L A Sbjct: 68 IIVNAASFDYLVFKDRFLIKNNPHLILDGALYLAKILNIKIINIVLKDYYSEEKKILIKA 127 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + E +G YD+ I ++ Y E S E KK Sbjct: 128 IAEAEDAG-------FAYDIKINIYDEQTYYSENHERITPLSFENKK------------- 167 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259 + ++E+I + + G + +G N+GT + S+SG + E M Sbjct: 168 -------YIFDLETITQITYLAHIGEFSFKNYGAYENKGTYILSMSGDIINTNIYEFEMY 220 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 +I + CG I+ ++ V G P + + +DY+ +G Sbjct: 221 TPIKNII-RACGTIKDY--SIKCVFTNGFLNPPIDFISFQNMTLDYECFNSFNMNIGNGG 277 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 + + +++ I ++ F K SCG+C PC G + +++ G + + L Sbjct: 278 ICFIREDRCMVRVILKIVQFAKSVSCGKCMPCHYGFDLCEYYINKMLLGNSDNEDYTNLK 337 Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 E + I +IC + I I FR I+ Sbjct: 338 EAIEMINTGSICLYIKKLSHCILSSIDMFRDEFLYLIENK 377 >gi|284167343|ref|YP_003405621.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding protein [Haloterrigena turkmenica DSM 5511] gi|284016998|gb|ADB62948.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding protein [Haloterrigena turkmenica DSM 5511] Length = 495 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 88/420 (20%), Positives = 164/420 (39%), Gaps = 48/420 (11%) Query: 6 DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65 R+ + S++D + G + + ++N + RG + Sbjct: 112 RRVLGACGWRRPTSVADHKAAGGFAP------SDAETVLNVGSSLNGRGWEDLCQDDSLA 165 Query: 66 WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125 ++ +D +VVN G+ D ++ P +++G + + + A +Y Sbjct: 166 ETWRTARATDGDPVVVVNGH----GSPADTLLLSSAPFEVLDGASVLANTVAADRIVVYA 221 Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 E ++ +AVD Y + V G Y E T +E++EG Sbjct: 222 SSEDDTAVKTASSAVDT-YPDPAAP----------MEVVTGPKEYRAAEPTMAIEAIEGN 270 Query: 186 -KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 + + RL+PP P +GL G PT V+ ++A + LR G T++ ++ Sbjct: 271 HRLEARLRPPGPERLGLDGRPTLVHTPRTLAHLAVGLREGIEEQ----------TRVMTV 320 Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 G V+ TVE S + EL+ + A GG + + Sbjct: 321 RGDVDAVATVELSETRKLSELVNTVGVDG-----SFKAACVGGRFGGI---TRDLDVEIG 372 Query: 305 YDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 + L LGT ++ V+ + +++ + + + F E+CG+C PCREGT + ++ Sbjct: 373 LEALDNAD--LGTDGIVDVLSDAQCLVEFVGQRASFAAEENCGRCVPCREGTAQLTLLLR 430 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 + G + ID E+ + + +ICA G+ A P + I+ F E + RC Sbjct: 431 NVYDGDFDAQAID---ELGRVMASSSICAFGERAGRPARTAIEAFTSEFEAHAE--GRCP 485 >gi|256396547|ref|YP_003118111.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Catenulispora acidiphila DSM 44928] gi|256362773|gb|ACU76270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Catenulispora acidiphila DSM 44928] Length = 418 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 110/404 (27%), Positives = 165/404 (40%), Gaps = 39/404 (9%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 G + ++ D ++N +KA+GLRGRGGAGF K + S + Sbjct: 26 DAYWHAGGYRDL------SPDLLVNRIKAAGLRGRGGAGFPAAAKLLAVRAAGS--VPVV 77 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 V N E EPG+ KDR +MR PH +++G + A+ A ++YV + ES++ A+ Sbjct: 78 VANGGEGEPGSVKDRWLMRARPHLVLDGMLRAADITRAARCYVYVADD--EAAESMRRAL 135 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 E V + A Y+ GEETA++ + G P KPP P G Sbjct: 136 AEREPY------------VPTQIVRVAHTYVAGEETAVVRRINGGPALPTAKPPRPFESG 183 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 + G PT V NVE++A + + R + L ++SG P VE + Sbjct: 184 VDGVPTLVANVETLARIALLAA----------RPQTPDSLLLTVSGPGLEPELVEAPVGT 233 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 + L + G V+ GG L +R + S LG AV Sbjct: 234 SLQALAYRADRLGTPG------VLMGGMFGGILDPRGLRTELEAAALTAAG-SALGCGAV 286 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 + + F ES QC C GT + R M V G A+ ++ L + Sbjct: 287 HFLAPGECPVALAAEGLAFLADESSRQCGVCVTGTAALARTMASAVHGTAEPDDLARLSK 346 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424 S+++ R C L DAAA L+++F PL E I+ C Sbjct: 347 WSQSLRRRGACGLLDAAANLAASLLRSFGPLTEAHIEGRSPCCL 390 >gi|225620388|ref|YP_002721645.1| NADH dehydrogenase [Brachyspira hyodysenteriae WA1] gi|225215207|gb|ACN83941.1| DH dehydrogenase [Brachyspira hyodysenteriae WA1] Length = 387 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 136/343 (39%), Gaps = 29/343 (8%) Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 ++++NA + KD+ ++R+ PH +++G V + + I ++ ++ ER+ + Sbjct: 65 EDFILINAASFDYLVFKDKFLLRNNPHLILDGSVFIAKILNIKRIDIVLKDYYLEERDII 124 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 ++ E + + YD++I ++ Y K R+ P F Sbjct: 125 LKSIVEAEDANFV-------YDIEINIYDEYAYY--------------NKYNIRITPSFL 163 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 N + ++E+I+ + + G + +G +G+ + SI+G + P E Sbjct: 164 ENK------KYIFDLETISQIAYLAHIGGFTFKDYGNGEYKGSNILSITGDIINPNLYEF 217 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 M +++ G ++ + V G P + + +DY+ + +G Sbjct: 218 EMHTPLRNIVKAAGGTVKEY--TIKCVFTNGFLNPPIDFETFQKMTLDYECFDSLNMKIG 275 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 + + II+ + ++ F K SCG+C+PC G + R++ G + + Sbjct: 276 NGGICFIQEDRCIIRVVVKIIQFGKSISCGKCSPCHNGFDLCEYYINRMLLGNSNFDDYS 335 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 L E + I+ C + A I ++ FR I+ Sbjct: 336 NLKEAVEMIKIGASCLYIRSLANCILSTMEMFRDEFVYLIENK 378 >gi|323168547|gb|EFZ54227.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella sonnei 53G] gi|323171965|gb|EFZ57609.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia coli LT-68] Length = 196 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 3/178 (1%) Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 SG V P E T E++E + GG+R G A PGG+ L + Sbjct: 1 MGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DL 58 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 M+++ + + GS LGTA + +D +++ + L F+ ESCG CTPCR+G W +++ Sbjct: 59 PMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKI 118 Query: 362 MERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 + L +G Q +I+ L ++ + + G+T CA A P+Q IK FR E I Q Sbjct: 119 LRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 176 >gi|312198406|ref|YP_004018467.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia sp. EuI1c] gi|311229742|gb|ADP82597.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia sp. EuI1c] Length = 435 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 147/382 (38%), Gaps = 11/382 (2%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPK------VCSDRPHYLVVNADESEPGTCK 93 +++E++A+GL GRGGAGF K + P +V NA ESEP + K Sbjct: 49 PAQLVDELRAAGLTGRGGAGFPMWRKLAAALGPDTSGGQAWSGPASVVANAAESEPESAK 108 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 D ++ H PH +++G + + A+ A A++YV+ E A + Sbjct: 109 DAWLLTHAPHLVLDGLALVAEAVSAADAYVYVKPGPGAESAGRALAERRAARVDRRPAEV 168 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 +L + V A A + + P G V N E+ Sbjct: 169 RL-APPGVFVAGEASAAAAVVDGGAAKPFPQFVPLAAPAPRGAGRQGRSRRSLVVCNAET 227 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 +A + + R GA+W+ G + GT L ++ G V P VE + T E++ G Sbjct: 228 LAHLALLARHGAAWFRERGTVDEPGTMLVTVGGAVVSPGLVEVPIGATLAEVVGLAGGAA 287 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 A+ GG L A + + GL + G V V+ + Sbjct: 288 ERPG----AIRVGGYGGSWLSADRTPDVPLSRAGLSAWDAAPGPGLVHVLPARACGLAET 343 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 RL+ + +S GQC PCR G + +L G EV++ ++GR C Sbjct: 344 ARLAGYLAAQSAGQCGPCRAGLPELAAAAGQLAGGGLTGSWARQAAEVAELVDGRGACRH 403 Query: 394 GDAAAWPIQGLIKNFRPLIEER 415 D AA ++ ++ F + Sbjct: 404 PDGAARLVRSALRVFAADLHAH 425 >gi|302529506|ref|ZP_07281848.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4] gi|302438401|gb|EFL10217.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4] Length = 368 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 152/391 (38%), Gaps = 50/391 (12%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G +D+ D +I+E+ +G+RGRGGAGF K + +V N Sbjct: 16 HGGLPALDR------DALIHEIDVAGIRGRGGAGFPAAAKLRSVA----PGRSIVVANGC 65 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 ES+P + KDR ++ PH +++G +A+ A+GA A++ +R S+ AA+ E Sbjct: 66 ESDPFSSKDRALLELAPHLVLDGIQVAAHAVGATEAYLCLR----EGNRSVLAALAERRD 121 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 + + Y+ EETAL+ L +P K P P GL G P Sbjct: 122 AVPVKV------------VAVPHRYVASEETALVHFLGSGDARPTGKFPRPTERGLRGRP 169 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 T V NVE++A + R GA + T L +++G V P +E + Sbjct: 170 TLVQNVETLARFALVARTGADRFV--------PTDLVTVTGAVARPGVMEVPADTPVSAI 221 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 + + G + AV+ GG +P + G G +++ ++ Sbjct: 222 LARAGGSV-----TAQAVLIGGYGGTWMPRSLADPLPL--------GREPGLSSLHLLPD 268 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 S ++ + ES QC PC G + L+ G + + + Sbjct: 269 SHCGVELTRNILHTLAGESARQCGPCMFGLPAVAADFTDLLSGRDATGRLARRLPL---L 325 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 GR CA D A ++ F + + Sbjct: 326 SGRGACAHPDGAVRLAASALRVFAADVHAHL 356 >gi|284110216|ref|ZP_06386512.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829782|gb|EFC34087.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] Length = 193 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183 + EF+ R SL+ A+++ G LG N G D+D+ + G G+Y+ GEETA+LES++ Sbjct: 1 MNAEFLDARASLEKALEQARTRGFLGRNVMGSGVDLDLEIFEGHGSYVAGEETAMLESMQ 60 Query: 184 GKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 G+ QP+ KPPF P GL+G PT VNNVE+++ VP +LR GA W++ G E + GT LF Sbjct: 61 GRPAQPKEKPPFYPTEFGLHGKPTLVNNVETLSHVPHLLRNGAEWFTEVGAEKSPGTMLF 120 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 S+SG VN P E + LIE+ CGG + A+ PGG S + + Sbjct: 121 SLSGAVNRPGVYELPLGTPLRHLIEE-CGGGVPHGRAIKAMFPGGPSFAMVGPDAL-DLP 178 Query: 303 MDYDGLKEMGSGLGT 317 MD+D LK+ G+GLG+ Sbjct: 179 MDFDALKKAGTGLGS 193 >gi|300787792|ref|YP_003768083.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis mediterranei U32] gi|299797306|gb|ADJ47681.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis mediterranei U32] Length = 376 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 153/386 (39%), Gaps = 45/386 (11%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + GRD +I V+A+ LRGRGGAGF T +K S +V N E +P + KD Sbjct: 29 DDGRDRLIEAVEAADLRGRGGAGFPTAVKLRAARSKRS----IVVANGCEGDPLSRKDVA 84 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ PH +++G +A+ AIGA A + V + + AA+ E Sbjct: 85 LLTLSPHLVLDGLQLAAHAIGAAEAVLCVHADSP-ALPGVAAALAEREDRAP-------- 135 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + V Y+ EETAL+ L +P K P PA G+ G PT V+NVE++A Sbjct: 136 ----VRVAQVPRRYVASEETALVRYLTSGDARPLGKRPRPAERGVRGRPTLVSNVETLAQ 191 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + +++ G + Y E L +++G V P VE + + G Sbjct: 192 LASVVLLGPNHYRASRTE------LVTVTGAVRRPGVVEVAAGTSLA----DALAAAGGE 241 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + + AV+ GG + G G AAV + ++ ++ Sbjct: 242 AEPVQAVLAGGYGGTW--------------TAELGGGVPGIAAVHALPVRACGLEYTAKV 287 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396 F ES QC PC G + LV+G + + + GR CA D Sbjct: 288 LAFLAAESARQCGPCTFGLPSIAADFAELVRGGPAAPRLARRLPL---LTGRGACAHPDG 344 Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRC 422 AA ++ F + RC Sbjct: 345 AARLAASALQVFDADVRAH-QAGGRC 369 >gi|297714474|ref|XP_002833671.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like, partial [Pongo abelii] Length = 155 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 84/136 (61%), Positives = 101/136 (74%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++SRG W +IL KG DWI+ E+K SGLRGRGGAGF Sbjct: 11 LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 70 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TG+KWSFM K RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++ A+GA A Sbjct: 71 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 130 Query: 122 FIYVRGEFIRERESLQ 137 +IY+RGEF E +LQ Sbjct: 131 YIYIRGEFYNEASNLQ 146 >gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme DSM 15981] gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme DSM 15981] Length = 218 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A GG S C+PA +DYD L +GS +G+ +IVMD ++ F Sbjct: 12 FKAAQTGGPSGGCIPAEH-FDIPIDYDNLLAIGSMMGSGGLIVMDEDDCMVDIAKFFLEF 70 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 ESCG+CT CR GT M+ ++E++ KG AQ ++D L E+ ++ ++C LG A Sbjct: 71 TVEESCGKCTACRIGTKRMLEILEKITKGTAQMEDLDKLEELCHYVKANSLCGLGQTAPN 130 Query: 400 PIQGLIKNFRPLIEERIDQYHRCN 423 P+ + FR E I + RC Sbjct: 131 PVLSTLHFFRDEYEAHIKE-KRCP 153 >gi|256371785|ref|YP_003109609.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008369|gb|ACU53936.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 408 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 147/348 (42%), Gaps = 31/348 (8%) Query: 52 LRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 + GRGGAGF K + + P +V N ESEPG KD+ ++ H PH +++G + Sbjct: 57 IVGRGGAGFPLARKLAAVASQRG--PRVVVANGAESEPGARKDKALLTHAPHLVLDGLGL 114 Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYI 171 A+ + A A + V E + L+ A+ E + + V +Y+ Sbjct: 115 ATRLLEAREAIVAV--EDATAADVLERAIRERSDA--------------VRVALLDRSYL 158 Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231 G+ETALL +LEG+ PR + A G PT V NVE++A R G SW+ Sbjct: 159 TGQETALLAALEGRPALPRFQLARVAERGYKSRPTLVANVETLAQWALAARFGTSWHQSA 218 Query: 232 GRENN-RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290 G + R T++ SI+ + P VE + T L++ L G + Sbjct: 219 GTRGHDRSTRIVSIALPGSTPTVVELAPGATVRSLLDAVGVTTGLA----LVGGLFGELI 274 Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350 M ++D + LG +V++ +T ++ A L + E GQC P Sbjct: 275 SVADERAMARVLVDRADSSDE-LALGAGSVLLAPSATCVVCATSELVGYLSEERAGQCGP 333 Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 C G + R + G L V++ I R CAL DAAA Sbjct: 334 CDRGLPELARALG---AGARPAE----LATVARLIARRGACALPDAAA 374 >gi|258651844|ref|YP_003201000.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nakamurella multipartita DSM 44233] gi|258555069|gb|ACV78011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nakamurella multipartita DSM 44233] Length = 426 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 143/363 (39%), Gaps = 23/363 (6%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRHEP 102 V A+GL+GRGGAGF T K + + +V N E +P KDR ++ P Sbjct: 49 AMVDAAGLQGRGGAGFPTARKIAAVAAAVGKTRRPAVVVANCCEGDPTAAKDRVLIDRSP 108 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 H +I+G V A+ A+ A + V R++L A+ E V I Sbjct: 109 HLVIDGAVAAARAVRADRVVLAVHHGSP-ARQTLAVALTERPDE-----------RVRIE 156 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 V Y+ E TALL L+ +P + P G+ G PT V+N E+ A + I R Sbjct: 157 VVAVPARYLASEATALLRFLDTGDARPAGRLPI-WEKGVEGRPTLVDNAETFAHLALIAR 215 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 GA W+ G GT L ++ G V P +E + +++ C G R Sbjct: 216 FGAGWFGAVGHPAEPGTMLLTLGGAVPRPGVIEVPTGASVRDVL--ACAGSRPTG----W 269 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 + GG + + + G + LKE+G G ++ V+ +++ R+ Sbjct: 270 ALIGGLAGRWMNLDRSAGIGLSTPELKEIGMTRGVGSLTVLPPGACLLQETTRIVTHQAQ 329 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 QC PC G + + L G + L+ I+GR C D Sbjct: 330 AGARQCGPCMFGLPAIAADLAALAAGDHDA--LARLHRRLPVIDGRGACGHPDGTVALTA 387 Query: 403 GLI 405 + Sbjct: 388 SAL 390 >gi|119718646|ref|YP_925611.1| respiratory-chain NADH dehydrogenase domain-containing protein [Nocardioides sp. JS614] gi|119539307|gb|ABL83924.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Nocardioides sp. JS614] Length = 412 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 144/369 (39%), Gaps = 30/369 (8%) Query: 54 GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 GRGGA F K +P + ++VN ESEP + KDR +M PH +++G + + Sbjct: 52 GRGGAAFPVATKLLAVP---TGSRTQVLVNGSESEPASRKDRTLMTLTPHLVLDGALAVA 108 Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173 A+ I V SL+ A+DE + + + AG ++ G Sbjct: 109 RALRTRHVTIAVHD--AAALASLRTALDERARDEPIHE--------RVDLRRTAGRFVSG 158 Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233 E ALL L+G P + P++ GL G PT +NVE+ A V ++ GA+ + G Sbjct: 159 EVRALLRGLDGGPAVPPSRRTLPSDSGLRGAPTFASNVETFAQVALLVSLGATEFGAVGN 218 Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293 GT L ++ G VE + D L+ G V+ GG + Sbjct: 219 PEEPGTTLLTLLGDTRTQGVVEVPTDLPLDALLPGAGGP----------VLVGGYHGRWV 268 Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353 + G GL+ G L V + R + + ++ + +S GQC PC Sbjct: 269 --RDVDGLAAARPGLRAAGLPLNAGVVARLPREVCALAEVTAVTRWLAAQSAGQCGPCLY 326 Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 GT + + L+ G A L + GR CA D + + +E Sbjct: 327 GTAALAHDVGELLHGRAAPAVEARLRGLV----GRGACAHPDGTTAFVSTALATLGDELE 382 Query: 414 ERIDQYHRC 422 Q+ C Sbjct: 383 LH-RQHGGC 390 >gi|150018599|ref|YP_001310853.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149905064|gb|ABR35897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 414 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 62/325 (19%), Positives = 117/325 (36%), Gaps = 58/325 (17%) Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 R ++ +I+G I +G IY+ + Sbjct: 45 RYLLEQHISKVIDGIKICQKELGIEKVKIYLSECYSNF---------------------- 82 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 LES E + K F ++ T V+N E++ Sbjct: 83 ---------------------KMQLESYEIEVVLVGNKKAF--EKDVFNEVTLVHNAETM 119 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 + L EN K+ SI+G V E + E+I ++ GG Sbjct: 120 YALKNSLE-----------ENYIPKKIISIAGDVKNSGIYEIPFGTSLREIISEYGGGTE 168 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 + V GG++ ++ Y L G+ L + + V + ++ + Sbjct: 169 SE-KAIKFVQVGGNTGAVFTEEEL-DTPFLYSNLIGNGTMLEVSKIEVYNVDMCVVNWVT 226 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394 + + E+CG+C CREG + ++++ +G ++ +I+L ++S+ I+ T+C G Sbjct: 227 QKMLDNSKETCGKCVYCREGIYQLYKIIKDATEGKGKESDINLALQLSETIKIGTLCDFG 286 Query: 395 DAAAWPIQGLIKNFRPLIEERIDQY 419 A+ P+ I FR E+ ID+ Sbjct: 287 RTASNPLYTAINKFRDEFEKHIDRK 311 >gi|221215864|ref|ZP_03588815.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia multivorans CGD1] gi|221164264|gb|EED96759.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia multivorans CGD1] Length = 281 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228 AY+CGEETALLESLEGK+G R KPP PA GL+G PT +NNV ++A P I RGA++Y Sbjct: 103 AYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFY 162 Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288 +G +RGT F ++G++ Y VE + +T EL+ GG G A GG Sbjct: 163 RDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGP 221 Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 LP +DY+ +G+ +G +++ D ++++ + F ESCG+C Sbjct: 222 LGTYLP-EHQWDVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKC 280 Query: 349 T 349 T Sbjct: 281 T 281 >gi|149436181|ref|XP_001521364.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV1, partial [Ornithorhynchus anatinus] Length = 149 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 88/140 (62%), Positives = 105/140 (75%), Gaps = 1/140 (0%) Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 IPGGSS P +P +MD+DGL + +GLGTAAVIVMDRSTDI+KAI RL FYKH Sbjct: 1 FIPGGSSTPLIPKSVCETVLMDFDGLVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKH 60 Query: 343 ESCGQCTPC-REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401 ESCGQCTPC R G WM +VM R VKG A+ EID L+E+SK IEG TICALGD AAWP+ Sbjct: 61 ESCGQCTPCVRAGVDWMNKVMWRFVKGEARAAEIDALWEISKQIEGHTICALGDGAAWPV 120 Query: 402 QGLIKNFRPLIEERIDQYHR 421 QGLI++FRP +E+R ++ Sbjct: 121 QGLIRHFRPELEQRFQRFEE 140 >gi|47216621|emb|CAG05422.1| unnamed protein product [Tetraodon nigroviridis] Length = 179 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 84/131 (64%), Positives = 99/131 (75%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L ++ RG W +IL KG DWI+NE+K SGLRGRGGAGF Sbjct: 46 LADEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 105 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A A+GA A Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 165 Query: 122 FIYVRGEFIRE 132 +IY+RGEF E Sbjct: 166 YIYIRGEFYNE 176 >gi|73982781|ref|XP_864339.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 6 [Canis familiaris] Length = 137 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 80/124 (64%), Positives = 98/124 (79%) Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 +MD+D L + +GLGTAAVIVMDRSTDI+KAI RL FYKHESCGQCTPCREG W Sbjct: 5 CETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDW 64 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M +VM R V+G A+ EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Sbjct: 65 MNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQ 124 Query: 418 QYHR 421 ++ + Sbjct: 125 RFAQ 128 >gi|302538138|ref|ZP_07290480.1| oxidoreductase [Streptomyces sp. C] gi|302447033|gb|EFL18849.1| oxidoreductase [Streptomyces sp. C] Length = 369 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 137/326 (42%), Gaps = 25/326 (7%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIM 98 D +++ LRGRGGAGF K + +R P +VVN E EP KD+ ++ Sbjct: 66 DELVDLAADIDLRGRGGAGFPFARKLRAVIGSAREREGPTAVVVNGSEGEPSCLKDKALL 125 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H PH +++G ++A+ A+GA + V + S++ AV E G Sbjct: 126 LHAPHLVLDGALLAAAAVGAEEVVVAVTRADVE--RSVRDAVAERGPGGR---------- 173 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + V ++ GE TA++ L G P + + GL G PT ++N E+ A + Sbjct: 174 -RVRVARLPERFVTGEGTAMVGGLNGGAALPSGRRVRTSERGLGGVPTLLSNTETYAQLA 232 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 R GA Y G + GT L +++G VE + +++ Sbjct: 233 VAARMGAPDYRAAGLPSEPGTVLLTVAG----QTVVETPTGTSLAYVLDLCG------TR 282 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 V+ GG L G R A + L G+ LG AV+ + T + R++ Sbjct: 283 TGQGVLVGGYHGRWLDPGAARSADVSRGSLSAFGAVLGAGAVLPLPEDTCPAGEVARVTR 342 Query: 339 FYKHESCGQCTPCREGTGWMMRVMER 364 + ES GQC PC G + V+E Sbjct: 343 WMAKESAGQCGPCVRGLPGLADVLED 368 >gi|169666458|gb|ACA63844.1| NADH:ubiquinone oxidoreductase NADH-binding 51kD subunit [Aphanomyces astaci] Length = 172 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 80/135 (59%), Positives = 98/135 (72%), Gaps = 1/135 (0%) Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMG-SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 PGGSSVP + + MD+D LK G SGLGTAAV + D+S D++ AI RLS FY HE Sbjct: 1 PGGSSVPVMDEATCQNIHMDFDDLKNTGGSGLGTAAVTIFDKSVDMVGAIRRLSHFYTHE 60 Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403 SCGQCTPCREGTGWM ++ R+ G A+ EI +L E+S+ IEG TICALGDAAAWP+QG Sbjct: 61 SCGQCTPCREGTGWMESILTRMETGNAELEEIPMLEEISRQIEGHTICALGDAAAWPVQG 120 Query: 404 LIKNFRPLIEERIDQ 418 LIK F+ + ERI+ Sbjct: 121 LIKRFKHKLVERIEN 135 >gi|146189573|emb|CAM91788.1| hypothetical protein [Platynereis dumerilii] Length = 137 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 73/120 (60%), Positives = 86/120 (71%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L DQDRIFTNLYG + ++SRG W +IL K +WI E+ SGL+GRGGAGF Sbjct: 18 LKDQDRIFTNLYGRHDRRPKGAISRGDWYKTKEILIKDNEWIQQEIVKSGLKGRGGAGFP 77 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 TGMKWSFM K RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A A+GA A Sbjct: 78 TGMKWSFMNKPRDGRPRYLVVNADEGEPGTCKDREIMRRDPHKLVEGCLVAGKAMGARAA 137 >gi|289810293|ref|ZP_06540922.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 157 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 62/136 (45%), Positives = 87/136 (63%), Gaps = 1/136 (0%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D I+++VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 22 QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 YL+ NADE EPGT KDR +M PH L+EG +I++FA+ A+ +I++RGE+I Sbjct: 82 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141 Query: 135 SLQAAVDECYASGLLG 150 L+ A+ E +G LG Sbjct: 142 HLRRAIAEATEAGCLG 157 >gi|297194423|ref|ZP_06911821.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] gi|297152265|gb|EFH31625.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486] Length = 269 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 64/263 (24%), Positives = 108/263 (41%), Gaps = 15/263 (5%) Query: 48 KASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRHEPHTL 105 + L GRGGAGF G K + K +VVN E EP KD ++ PH + Sbjct: 20 EDISLTGRGGAGFPFGKKLRAVAKSAIRRGIRPVVVVNGSEGEPACRKDTVLLNRAPHLI 79 Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH 165 ++G ++A+ A+GA + V + A G + + G + V Sbjct: 80 LDGALLAAEALGARTLVVAVTRNSTE--------ISMRAALAERGLSDRRGQALRARVVR 131 Query: 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGA 225 + GE ++++ ++ G P + A G+ G PT ++N E+ A + R GA Sbjct: 132 TPERMVSGEASSVIRAVNGGPALPPGRRVRAAETGVGGAPTLLSNAETFAQLAVAARIGA 191 Query: 226 SWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285 YS G ++ GT + +ISG V P VE + +++ V+ Sbjct: 192 RRYSHTGLDSEPGTVMLTISGAVARPMVVEVPTGVPLRYVLQLAGA-----PPQPQGVLT 246 Query: 286 GGSSVPCLPAGQMRGAIMDYDGL 308 GG + A + A++ + L Sbjct: 247 GGYHGNWIDAAAVHEAVVSKESL 269 >gi|256962026|ref|ZP_05566197.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] gi|256952522|gb|EEU69154.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis Merz96] Length = 175 Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%) Query: 1 MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58 ML +Q + + +Q +S+ +D + + + + I+NE+ + LRGRGGA Sbjct: 1 MLKRNQPMLLERMGKMQSATDVSEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 + G KW + Y+V NADE EPGT KD+ ++ +P ++IEG +IA + A Sbjct: 61 AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYIC 172 +IY+RGE+ R +++ Q A+D +G LG N G++ DI + GAGAYIC Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYIC 175 >gi|67043787|gb|AAY63992.1| NADH dehydrogenase flavoprotein 1-like protein [Lysiphlebus testaceipes] Length = 121 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 69/116 (59%), Positives = 89/116 (76%) Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 D L + S GTAA+IVM++ TD+IKAI RL FYKHESCGQCTPCREG WM ++M R Sbjct: 1 DDLVRVQSSFGTAALIVMNKQTDVIKAIQRLISFYKHESCGQCTPCREGISWMHKIMSRF 60 Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421 V+G A+ EID+L+E++K IE TICAL D AAWP+QGL+++FRP IEER+ + + Sbjct: 61 VEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLVRHFRPAIEERMINFKQ 116 >gi|263364|gb|AAB24883.1| mitochondrial NADH:ubiquinone oxidoreductase 51 kda subunit [Homo sapiens] Length = 130 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 65/96 (67%), Positives = 71/96 (73%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L S+SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 TG+KWSFM K RP YLVVNADE EPGTCKDR+I Sbjct: 95 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 130 >gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii DSM 18315] gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii DSM 18315] Length = 184 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DYD L GS +G+ +IVMD ++ F ESCG+C PCR G + +++ Sbjct: 1 DYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKRLHEMLQ 60 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423 ++ G +++ L ++ I+ +C LG + P+ + NF + + RC Sbjct: 61 KITSGNGTIEDLNRLRNLAGVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVKE-KRCP 119 >gi|167830055|ref|ZP_02461526.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9] Length = 251 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 99 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217 Query: 121 AFIYVRGEFIRERES 135 IYVR E+ + Sbjct: 218 GHIYVRSEYPHAIAA 232 >gi|213400751|gb|ACJ47024.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Ctenocephalides canis] Length = 124 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 77/124 (62%), Positives = 97/124 (78%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+AA++E Y GL+G N+ K GY++D+ +H GA Sbjct: 1 ILLAGKAISASAAYIYIRGEFYNEYLILKAALEEAYQKGLIGQNACKSGYNLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IAVVP ILRRG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAVVPDILRRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400747|gb|ACJ47022.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Zootermopsis angusticollis] gi|213400749|gb|ACJ47023.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Zootermopsis nevadensis] Length = 124 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 76/124 (61%), Positives = 96/124 (77%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLVGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|273160844|gb|ACZ97596.1| mitochondrial complex I subunit [Psalteriomonas lanterna] Length = 147 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 78/146 (53%), Positives = 99/146 (67%) Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 CGG+RGGWDNLLAVIPGGSS LP +MD+D L + S GTA+++VMD+STDI Sbjct: 1 CGGVRGGWDNLLAVIPGGSSTAPLPKKVCDSVLMDFDSLAAVNSSFGTASILVMDKSTDI 60 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389 +KA R + FYK ESCGQCTPCREG W+ +M+ KG + +ID L + ++I GR+ Sbjct: 61 VKAFARQAHFYKEESCGQCTPCREGMHWITDMMDSFAKGEGKLEDIDFLMDTCQHISGRS 120 Query: 390 ICALGDAAAWPIQGLIKNFRPLIEER 415 ICAL D A I GLI N RP +E + Sbjct: 121 ICALADGGAQGIIGLINNSRPFLEAK 146 >gi|213400729|gb|ACJ47013.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia longicornis] Length = 124 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 75/124 (60%), Positives = 95/124 (76%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|167720687|ref|ZP_02403923.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei DM98] Length = 210 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 2 LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60 L Q R+ G+ S+ D ++ G + + L + SGLRGRGGA F Sbjct: 79 LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 138 Query: 61 STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120 G+KW + + + Y+V NADE + GT DR +M +P+ LIEG +IA A GA Sbjct: 139 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 197 Query: 121 AFIYVRGEFIRER 133 IYVR E+ Sbjct: 198 GHIYVRSEYPHAI 210 >gi|213400745|gb|ACJ47021.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Coptotermes acinaciformis] Length = 124 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 76/124 (61%), Positives = 95/124 (76%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGRAICASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEW 120 Query: 228 YSGF 231 + Sbjct: 121 FMSL 124 >gi|213400739|gb|ACJ47018.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Litomosoides sigmodontis] Length = 124 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 75/124 (60%), Positives = 95/124 (76%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGRAISTSVAYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPANVGL+GCPT +NNVE+IA+VP ILRRG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPANVGLFGCPTMINNVETIAMVPDILRRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400743|gb|ACJ47020.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasutitermes nigriceps] Length = 124 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 76/124 (61%), Positives = 97/124 (78%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGRAICASIAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA+VGL+GCPTT+NNVE+IA+VP ILRRG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPASVGLFGCPTTINNVETIAMVPDILRRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400735|gb|ACJ47016.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Drosophila simulans] Length = 124 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGRAINASAAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W Sbjct: 61 GAYICGEETAQFESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAIVPDILNRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400731|gb|ACJ47014.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia vitripennis] Length = 124 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 74/124 (59%), Positives = 94/124 (75%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400753|gb|ACJ47025.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Dipetalonema gracile] Length = 124 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 71/124 (57%), Positives = 94/124 (75%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ ++ E Y GL+G N+ K Y++D+ +H GA Sbjct: 1 ILLAGKAINASTAYIYIRGEFYNEYLVLKKSLKEAYKEGLIGKNACKSDYNLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGK+G PR+KPPFPA VGL+GCPTT+NNVE+IA++P ILRRG W Sbjct: 61 GAYICGEETAQLESIEGKRGFPRIKPPFPAEVGLFGCPTTINNVETIAMIPDILRRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400733|gb|ACJ47015.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Armadillidium vulgare] Length = 124 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 72/124 (58%), Positives = 94/124 (75%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A A+ A A+IY+RGEF +E L+ A++E Y L+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGRAVSASVAYIYIRGEFYKEYLVLKKALEEAYEENLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL G W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRVKPPFPAGVGLFGCPTTINNVETIAMVPDILNHGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400737|gb|ACJ47017.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Tribolium confusum] Length = 124 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GA Sbjct: 1 ILLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL RG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAVVGLFGYPTTINNVETIAMVPDILNRGGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|213400741|gb|ACJ47019.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Folsomia candida] Length = 124 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 75/123 (60%), Positives = 94/123 (76%), Gaps = 1/123 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 V+A AI A A+IY+RGEF E L+ A++E Y GL+G N+ K GYD+D+ +H GA Sbjct: 1 IVLAGKAINASAAYIYIRGEFYNEYLILKEALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+I +VP IL RG W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIPMVPDILTRGGEW 120 Query: 228 YSG 230 ++ Sbjct: 121 FAS 123 >gi|213400755|gb|ACJ47026.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Cordylochernes scorpioides] Length = 124 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 72/124 (58%), Positives = 92/124 (74%), Gaps = 1/124 (0%) Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167 ++A AI A A+IY+RGEF E L+ A+ E Y GL+G N+ K YD+D+ +H GA Sbjct: 1 ILLAGRAINASVAYIYIRGEFYNEYLVLKKALKEAYKGGLIGKNACKSDYDLDVFIHRGA 60 Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 GAYICGEETA LES+EGKKG PR+KPPFPA +GL+GCPTT+NNVE+IA+VP IL R W Sbjct: 61 GAYICGEETAQLESIEGKKGFPRMKPPFPAGIGLFGCPTTINNVETIAMVPDILYRKGEW 120 Query: 228 YSGF 231 ++ Sbjct: 121 FASL 124 >gi|237800540|ref|ZP_04589001.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023400|gb|EGI03457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 148 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + L + ++ + K L + D I+ VK SGL+GRGGAGF TG+KW MPK S Sbjct: 30 EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 YL+ NADE EP T KDR +M PH LIEG +I++ A+ A+ +I++RGE++ Sbjct: 90 MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYVTAA 148 >gi|268323919|emb|CBH37507.1| putative Fe-only hydrogenase, N-terminus [uncultured archaeon] Length = 117 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 19 SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 ++ + G + +++K L+ II+EVK SGL GRGGA F TG+KW F K S+ Sbjct: 16 DIAIYIKTGGYSSLEKALQMQPHDIIDEVKKSGLVGRGGAAFPTGLKWEFTRK-ESEELK 74 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 Y+V NADE EPGT KDR I+++ PH L+E +IA +AIGA A Sbjct: 75 YVVCNADEGEPGTFKDRVILKNNPHLLVESMIIAGYAIGAKEA 117 >gi|237859138|gb|ACR23742.1| RnfC [Acetobacterium woodii DSM 1030] Length = 443 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 114/338 (33%), Gaps = 60/338 (17%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + D I V +G+ G GGA F T +K + P D +V+N E EP D Sbjct: 121 DMDADAIKKMVLNAGIVGLGGATFPTHVKLAIPPDKKVDC---VVLNGAECEPYLTADHH 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M + ++ G +A ++G FI V E+L A+ G Sbjct: 178 LMTSQAEKVVMGLKLAMKSVGVEKGFIGVEDNKTDAIEALVKAI---------------G 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D + V+ Y G E L+ ++ G++ PA+ G+ V NV + A Sbjct: 223 NDSRLEVYSLHTKYPQGAEKQLIAAITGREV---PSGALPADAGV-----VVMNVGTAAQ 274 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + + G Y + L + P T+E + + F +I CGG Sbjct: 275 IAESMITGLPLYKRY---------LTCTGDAIKNPQTIEIRIGVPFQSVI-DQCGGFSSE 324 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 VI GG + + ++ GT+ ++ + + + Sbjct: 325 PGK---VISGGPMMGV------------TQFVTDIPVMKGTSGILCLTKES--------- 360 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 + +C C C ++ + + Sbjct: 361 AKIATPSNCIHCGKCVGVCPIHLQPLNIAEYSQRNMWD 398 >gi|281422077|ref|ZP_06253076.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella copri DSM 18205] gi|281403866|gb|EFB34546.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella copri DSM 18205] Length = 450 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 68/367 (18%), Positives = 123/367 (33%), Gaps = 64/367 (17%) Query: 15 LQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 ++G +S+ R + ++ E + I+N +K +GL G GGAGF T +K P Sbjct: 101 VEGDEWEESIDRSDKLETLEAHAELTPEEIVNRIKVAGLTGMGGAGFPTFIKLCPPPGAK 160 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 ++ +++N E EP D +M ++ G + A +I + Sbjct: 161 AEC---VIINGVECEPYITADYRLMMEHADEILVGLNLLMKAAQVEKGYIGIEDNKPAAI 217 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 + + K D I + A Y G E L++++ + Q P Sbjct: 218 KLFEE---------------KTANDARIEIVPLAKKYPQGGEKQLVDAVI--RRQVPAPP 260 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPC 252 P NVG V NV + V Y + + +++G V P Sbjct: 261 AIPVNVG-----AIVQNVGTAFAV----------YQAVMKNKPLFERYTTVTGKQVKNPG 305 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312 M F ++IE G G L G +V L + Sbjct: 306 NFLVRMGTPFSQMIENCGGLPEGDNKVLAGGPMMGKAVISL------DVPVTK------- 352 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372 GT ++ V+ + K + C +C C + + L+ ++ Sbjct: 353 ---GTNSITVLTDADAHRKKA---------QPCIRCAKCVDACPMGLEPY--LLATLSVV 398 Query: 373 REIDLLY 379 ++ + L Sbjct: 399 KDYERLE 405 >gi|46202100|ref|ZP_00053780.2| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 212 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 13/176 (7%) Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301 SISG P E + +++ D I G S + P G Sbjct: 1 MSISGDCERPGIYEYPYGVKVSQVLADCGA-----RDTQACQIAGASGLAIAPNE--FGR 53 Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 + ++ + GS + + D + D+ + + F+ HESCG CTPCR GT + Sbjct: 54 RIAFEDIPTGGSFM------IFDNTRDMFQVARNFAHFFVHESCGFCTPCRVGTTLLANA 107 Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 M+++ +G + +I ++ V + ++ + C LG A + ++ FRP E R++ Sbjct: 108 MDKIDEGHGGEYDISDIWRVIRTLKTASHCGLGQTAGNAVADTLQKFRPSYELRLN 163 >gi|160942347|ref|ZP_02089655.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC BAA-613] gi|158434711|gb|EDP12478.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC BAA-613] Length = 450 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 70/365 (19%), Positives = 136/365 (37%), Gaps = 66/365 (18%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ ++K +G+ G GGAGF T +K + YL++NA E EP DR +M H+ Sbjct: 3 LLEQIKEAGIVGCGGAGFPTHVKLNCT-------VEYLIINAAECEPLLRTDRFLMLHKA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ + + A +I ++ + E +L+AA+ E ++ + Sbjct: 56 REIVTAAGMIGDMVQAGKRYIVLKETYSEEIAALEAAITELHS--------------PVK 101 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 ++ Y G+E ++ + G+ P P +VG V+N+ ++ + + Sbjct: 102 LYKMKNFYPAGDEQIMVCDVTGRTVPPSG---IPLDVG-----AVVSNLATVYSIYNASQ 153 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 K +++G VN PC V + +F E + G + Sbjct: 154 -----------GQPFTEKYLTVTGAVNSPCIVRAPLGTSFAECLLLAGGSSLSSFH---- 198 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRLSVFYK 341 VI GG M G + + T+ I++ T ++ K +SV K Sbjct: 199 VIAGGP---------MMGKCYRKEEAAGLTVTKTTSGYIIVADDTPLVEKHNIPISVSLK 249 Query: 342 HE--SCGQCTPCREGTGWM--------MRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 C QC+ C + +M +L + + ++ E + + C Sbjct: 250 RAKMCCIQCSYCTQMCPRYLTGHPLKPHMIMRKLAYAQSPEEVLE--DEHVRQAMICSEC 307 Query: 392 ALGDA 396 L + Sbjct: 308 GLCET 312 >gi|225164245|ref|ZP_03726518.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] gi|224801150|gb|EEG19473.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2] Length = 128 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 51/110 (46%), Positives = 72/110 (65%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L GS G+ VIVMD S ++++A+ ++ FY HESCGQCTPCREG+ WM ++ Sbjct: 1 MDFDTLAACGSMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWMKKIT 60 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 R+V G A+ + LL V+ I GRTICA+G+A +WP Q ++ F Sbjct: 61 ARMVHGTARAEDAALLKGVADQIPGRTICAMGEACSWPTQSFLQKFGDEF 110 >gi|167946814|ref|ZP_02533888.1| NADH dehydrogenase (ubiquinone), F subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 109 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 3/103 (2%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 NL + L SRG ++ + KIL++ + +I EVK SGLRGRGGAGF TG+KW Sbjct: 7 LRNLDQERPWLLEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKW 66 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SF+ + Y+V N+DE EPGT KDRDI+R+ PH LIEG Sbjct: 67 SFITRNAPG-QKYVVCNSDEGEPGTFKDRDILRYNPHQLIEGM 108 >gi|310828230|ref|YP_003960587.1| RnfC [Eubacterium limosum KIST612] gi|308739964|gb|ADO37624.1| RnfC [Eubacterium limosum KIST612] Length = 446 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 113/318 (35%), Gaps = 62/318 (19%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 II+ ++ +G+ G GGA F T +K S P D +++N E EP D +M Sbjct: 126 PKQIIDIIRDAGIVGMGGATFPTHVKLSIPPDKTVDS---VILNGAECEPYLTADHHLML 182 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 P +++G IA A+G +I V E L+ A+ E Sbjct: 183 ARPKRIVQGLRIAMRAVGVDKGYIGVESNKPNAIEKLRKAITE---------------KD 227 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 +I V Y G E L++++ ++ PA+ G+ V NV + + Sbjct: 228 NIEVVVLETKYPQGAEKQLIKAVTDREV---PSGGLPADAGV-----VVLNVGTACQIAI 279 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 G + +L + +G+ V T+E + + E++++ G Sbjct: 280 TFETGLPLHK----------RLLTCTGNAVKNARTMEVKVGTPYQEVVDQCGG----FAK 325 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 VI GG M G + + GT+ ++ + K + Sbjct: 326 KPYKVISGGP---------MMGVTLFSTDVP---VMKGTSGIL------CLTKGAAYIPE 367 Query: 339 FYKHESCGQCTPCREGTG 356 +C +C C E Sbjct: 368 ---PSNCIRCGKCAEACP 382 >gi|296082757|emb|CBI21762.3| unnamed protein product [Vitis vinifera] Length = 350 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 61/90 (67%), Positives = 68/90 (75%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYGL L +M RG W I+ KG DWI+NE+K SGLRGRGGAGF Sbjct: 177 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 236 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 +G+KWSFMPKV RP YLVVNADESEPGT Sbjct: 237 SGLKWSFMPKVSDGRPSYLVVNADESEPGT 266 >gi|110589186|gb|ABG77102.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 115 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 3/103 (2%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66 NL + L SRG ++ + KIL++ + +I EVK SGLRGRGGAGF TG+KW Sbjct: 13 LRNLDQERPWLLEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKW 72 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 SF+ + Y+V N+DE EPGT KDRDI+R+ PH LIEG Sbjct: 73 SFITRNAPG-QKYVVCNSDEGEPGTFKDRDILRYNPHQLIEGM 114 >gi|295091667|emb|CBK77774.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Clostridium cf. saccharolyticum K10] Length = 479 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 56/318 (17%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 ++ +++++G+ G GGAGF K + R YL+VNA E EP DR +M H+ Sbjct: 3 LLEQIESAGIVGCGGAGFPAHKKLNC-------RVEYLIVNAAECEPLLRTDRWLMIHKA 55 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 ++ +A A +I ++ + E +L AA++E GY V + Sbjct: 56 KEIVTAAALAGSMTEASHIYIALKETYREEAAALTAAIEE------------TGYPVKLF 103 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 Y G+E ++ + G+ P P +VG + N ++ V + Sbjct: 104 PMRN--FYPAGDEQIMVCDVTGRTVPPSG---IPLDVG-----CVIANTATMYAVFEASQ 153 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 K +++G VN PC V + +F + + G Sbjct: 154 -----------GKPLTRKYLTVTGAVNEPCIVRAPLGSSFSDCLRLAGG----------- 191 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWRLSVF 339 G S L G M G + + + + T+ +IV+ T +I+ A LS+ Sbjct: 192 --TGLSRYYVLAGGPMMGKLYSMEEAESLTVTKTTSGLIVLPEDTPLIRRKTAPVSLSLK 249 Query: 340 YKHESCGQCTPCREGTGW 357 SC QC+ C + Sbjct: 250 LAKTSCIQCSYCTQMCPR 267 >gi|227484615|ref|ZP_03914931.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus lactolyticus ATCC 51172] gi|227237335|gb|EEI87350.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus lactolyticus ATCC 51172] Length = 451 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 76/382 (19%), Positives = 140/382 (36%), Gaps = 66/382 (17%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + V + + I+ +VK +G+ G GGA F +K+S + ++VN E E Sbjct: 121 YTEVKNV-TLSPEEIVAKVKEAGIVGMGGAAFPAHVKYS-----PNKPIDTVIVNGAECE 174 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D IM++ P +I+G + A+ A I + +S+ A+ E + Sbjct: 175 PYITCDDYIMKNYPLHIIKGLIQVLKAVNAKEGVIAIENNKPAAYKSMTEALAEFAKTN- 233 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 +D I V Y G+E L+ ++ K+ P P +VG V Sbjct: 234 -------KFDGTIKVVSLETKYPQGDEKRLINAIL-KREVP--SGGLPMDVG-----AVV 278 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 +NV ++ + L G Y ++ +++G V P + + +F++LIE Sbjct: 279 SNVSTVNAIYEALYMGKPLY----------ERILTVTGRTVKNPQNMRVRIGTSFNDLIE 328 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + G + + VI GG A ++ T ++V D Sbjct: 329 EAGGA-----EEIAKVINGGPMCGI--AQPDLNKPVEKA----------TNCILVFDSKD 371 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMM---RVMERLVKGIAQKREIDLLYEVSKN 384 I+ C +C C + + + + G +K + + + Sbjct: 372 AFIE---------DPTPCIRCGRCVSVCPVFLLPNYIHKHALDGRFEKADEEGALD---C 419 Query: 385 IEGRTICALGDAAAWPIQGLIK 406 IE + C+ A P+ IK Sbjct: 420 IECGS-CSFVCPARRPLVEAIK 440 >gi|255994383|ref|ZP_05427518.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium saphenum ATCC 49989] gi|255993096|gb|EEU03185.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium saphenum ATCC 49989] Length = 448 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 130/379 (34%), Gaps = 70/379 (18%) Query: 9 FTNLYGLQGKSLSDSMSRGHWDN----VDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64 N G+ +++ + V K K + I V+ASG G GGA F T + Sbjct: 97 VRNAMGMMDEAVE--IKTDGLQEISEEVKKPEVKDFESFIAAVRASGAVGLGGAAFPTHI 154 Query: 65 KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124 K F PK D L++NA E EP D +M +P +++G I +G A I Sbjct: 155 K--FNPKNI-DEVDTLIINAAECEPFITADHRLMLEDPVDILDGIEITMRYMGIKRAIIG 211 Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184 + E L + + + G + + Y G E L G Sbjct: 212 IESNKPNAIEVLNSEISKRKLDG-------------VSIKVLQSRYPQGAERVLAYEATG 258 Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244 +K PA++GL + NV +IA + +R G + K ++ Sbjct: 259 RKLDA---GVLPADIGL-----IITNVATIAFIGQYMRNGIPLIN----------KRLTV 300 Query: 245 SGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303 G VN P V ++ +LI CGG + ++ GG M G + Sbjct: 301 DGDAVNTPQNVIVAIGTPIKDLI-AACGGYKKHP---KKILMGGP---------MMGRAI 347 Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES-CGQCTPCREGTGWMMRVM 362 D L A++ F E+ C C C + ++ Sbjct: 348 FSDELP---IIKNNNAILAFADED----------KFTMPETPCISCGKCHQACP--FDLL 392 Query: 363 ERLVKGIAQKREIDLLYEV 381 + +++D L ++ Sbjct: 393 PAAYYKAYKSQDVDTLNKL 411 >gi|325523852|gb|EGD02080.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49] Length = 155 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 2/155 (1%) Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 I RGA++Y +G +RGT F ++G++ + VE + +T EL+ + GG G Sbjct: 1 IFARGAAFYRDYGMGRSRGTLPFQLAGNIRHGGLVELAFGVTLRELLFEFGGGTASGRPA 60 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 A GG LP +DY+ +G+ +G +++ D ++++ F Sbjct: 61 -RAAQVGGPLGTYLP-EHQWDVPLDYEAYAAIGAVVGHGGIVLHDDTSNLAALAEYAMKF 118 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 ESCG+CTPCR G+ + + R+ +G +R+ Sbjct: 119 CAIESCGKCTPCRIGSTRGVETIARIRQGDTSERQ 153 >gi|213025627|ref|ZP_03340074.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 112 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364 ++ + + GS LGTA + +D ++ + L F+ ESCG CTPCR+G W ++++ Sbjct: 1 FESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRA 60 Query: 365 LVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEE 414 L +G Q +I+ L ++ + + G+T CA A P+Q IK FR E Sbjct: 61 LERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEA 111 >gi|167720688|ref|ZP_02403924.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei DM98] Length = 143 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 GG LP Q +DY+ +G+ +G +++ D ++++ + F Sbjct: 2 AQVGGPLGTYLPESQ-WDIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCAL 60 Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402 ESCG+CTPCR G+ + + R+ G +R++ LL ++ + ++CA+G +P+ Sbjct: 61 ESCGKCTPCRIGSTRGVETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVL 120 Query: 403 GLIKNFRPLI 412 + +F Sbjct: 121 SALDHFPEDF 130 >gi|224550185|gb|ACN54177.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia longicornis] gi|224550187|gb|ACN54178.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia giraulti] gi|224550189|gb|ACN54179.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia longicornis] Length = 109 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 69/109 (63%), Positives = 85/109 (77%), Gaps = 1/109 (0%) Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172 AI A A+IY+RGEF E L+ A++E Y L+G N+ K GYD+D+ +H GAGAYIC Sbjct: 1 RAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYIC 60 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 GEETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL Sbjct: 61 GEETAQLESIEGKKGFPRMKPPFPAGVGLFGYPTTINNVETIAMVPDIL 109 >gi|256003828|ref|ZP_05428815.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 2360] gi|255992166|gb|EEU02261.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 2360] Length = 403 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 62/330 (18%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + I+ ++ SGL G GGAGF +K S P D L++NA E E Sbjct: 72 YEGIKPPSFSNSKEFISAIRESGLVGLGGAGFPAHVKLSPPPDKKID---TLIINAAECE 128 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D + ++ G I +G I + + + + Sbjct: 129 PYITSDYREIIENSWNVVSGINIIMEILGIENVLIGIEDNKPEAIK------EMTRVAA- 181 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 D I V Y G E L+ + G+K P PA+VG+ V Sbjct: 182 --------TDDRINVIKLKSRYPQGAEKMLIYATTGRKVPP---GKLPADVGV-----IV 225 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 NV S++ + ++ G K ++ G V P VE + E + Sbjct: 226 MNVNSVSFISEYIKTGMPLIK----------KRVTVDGPSVKRPGNVEVLIGTPISE-VF 274 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 CGG ++ GG + A + T A++ D +T Sbjct: 275 SFCGGFGIVP---KKILMGGPMMGI--AQYTLDTPVLKH----------TNALLAFDETT 319 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 ++ K ++C +C C Sbjct: 320 AVLP---------KEQACIRCGRCVRACPM 340 >gi|325681300|ref|ZP_08160829.1| putative protein HymB [Ruminococcus albus 8] gi|324106991|gb|EGC01278.1| putative protein HymB [Ruminococcus albus 8] Length = 252 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58 Q RI N + + + + ++ + + K+L+ D ++ EV SG+RGRGGA Sbjct: 144 FYRKQKRIALRNCGVIDPEDIEEYIATEGYQALYKVLDSMTPDEVVKEVLDSGIRGRGGA 203 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 GF TG KW F D Y+ NADE +PG DR I+ +P Sbjct: 204 GFPTGRKWMFTKDAPGD-VKYVACNADEGDPGAFMDRSILEGDP 246 >gi|125974915|ref|YP_001038825.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum ATCC 27405] gi|125715140|gb|ABN53632.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum ATCC 27405] gi|316939126|gb|ADU73160.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 1313] Length = 439 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 62/330 (18%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + I+ ++ SGL G GGAGF +K S P D L++NA E E Sbjct: 108 YEGIKPPSFSNSKEFISAIRESGLVGLGGAGFPAHVKLSPPPDKKID---TLIINAAECE 164 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D + ++ G I +G I + + + + Sbjct: 165 PYITSDYREIIENSWNVVSGINIIMEILGIENVLIGIEDNKPEAIK------EMTRVAA- 217 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 D I V Y G E L+ + G+K P PA+VG+ V Sbjct: 218 --------TDDRINVIKLKSRYPQGAEKMLIYATTGRKVPP---GKLPADVGV-----IV 261 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 NV S++ + ++ G K ++ G V P VE + E + Sbjct: 262 MNVNSVSFISEYIKTGMPLIK----------KRVTVDGPSVKRPGNVEVLIGTPISE-VF 310 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 CGG ++ GG + A + T A++ D +T Sbjct: 311 SFCGGFGIVP---KKILMGGPMMGI--AQYTLDTPVLKH----------TNALLAFDETT 355 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 ++ K ++C +C C Sbjct: 356 AVLP---------KEQACIRCGRCVRACPM 376 >gi|315924585|ref|ZP_07920804.1| Na(+)-translocating NADH-quinone reductase subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315622115|gb|EFV02077.1| Na(+)-translocating NADH-quinone reductase subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 410 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 112/332 (33%), Gaps = 66/332 (19%) Query: 17 GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 ++ G + IIN +K +G+ G GGA F T +K + P D Sbjct: 72 DPAIKPY---GDYQQY------SSSEIINIIKEAGIVGLGGATFPTHVKLTVSPDKHVDS 122 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 +++N E EP D +M+ P +I G IA A+ +I Sbjct: 123 ---VILNGAECEPYLTADDHLMQDRPEKVIAGLHIAMRALDVSKGYI------------- 166 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A+++ + D + V Y G E L+ ++ G++ P Sbjct: 167 --AIEDNKPDAINAIVGVCKGDDAVEVIRLKTKYPQGAEKQLITAVTGREV---PSGGLP 221 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256 A+ G+ V NV + A V T G Y + V P T+E Sbjct: 222 ADAGV-----VVMNVGTAAQVATTFETGMPLYKRYVT---------CTGDVVKNPATLEV 267 Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 + +++ E+I++ G VI GG M G M + G Sbjct: 268 LVGMSYQEVIDECGG----FVQAPAKVISGGP---------MMGVAMLRTDIP---VMKG 311 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348 T+ V+ + K + CG+C Sbjct: 312 TSGVL------CLSKEAAQTPEPTACIRCGRC 337 >gi|167038505|ref|YP_001666083.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751374|ref|ZP_05492253.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter ethanolicus CCSD1] gi|320116900|ref|YP_004187059.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857339|gb|ABY95747.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749756|gb|EEU62781.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter ethanolicus CCSD1] gi|319929991|gb|ADV80676.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 443 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 116/338 (34%), Gaps = 66/338 (19%) Query: 20 LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 L +S+ K+ + II +K +G+ G GGAGF T +K S D Sbjct: 109 LDESVKAKG-----KLEDLSPKEIIEIIKEAGITGMGGAGFPTHVKLSPPSDKKID---T 160 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 ++VN E EP D +M P ++ G A+G I V +L+ A Sbjct: 161 ILVNGAECEPYLTTDHRLMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREA 220 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 + +I + Y G+E L+ ++ G + P P +V Sbjct: 221 ---------------SKDEKNIQIATLKVKYPQGDEKRLINAILG-RIVP--SGGLPMDV 262 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESM 258 G+ V N + V + G Y ++ +I+GH + P + + Sbjct: 263 GV-----IVVNAATTKAVADAILEGKPLY----------ERVTTITGHGIKQPKNLLVKI 307 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 +LIE+ G D+ +I GG + A + GT Sbjct: 308 GTPLKDLIEQCGG---FTEDSPGKIISGGPMMGI--AQHSLDVPI----------IKGTG 352 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++++ + + + + C +C C E Sbjct: 353 GILILTKKE---------ARPEQVQPCIKCGKCVEVCP 381 >gi|281418619|ref|ZP_06249638.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum JW20] gi|281407703|gb|EFB37962.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum JW20] Length = 439 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 62/330 (18%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ + I+ ++ SGL G GGAGF +K S P D L++NA E E Sbjct: 108 YEGIKPPSFSNSKEFISAIRESGLVGLGGAGFPAHVKLSPPPDKKID---TLIINAAECE 164 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D + ++ G I +G I + + + + Sbjct: 165 PYITSDYREIIENSWNVVSGINIIMEILGIENVLIGIEDNKPEAIK------EMTRVAA- 217 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 D I V Y G E L+ + G+K P PA+VG+ V Sbjct: 218 --------TDDRINVIKLKSRYPQGAEKMLIYATTGRKVPP---GKLPADVGV-----IV 261 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 NV S++ + ++ G K ++ G V P VE + E + Sbjct: 262 MNVNSVSFISEYIKTGMPLIK----------KRVTVDGPSVKRPGNVEVLIGTPISE-VF 310 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 CGG ++ GG + A + T A++ D +T Sbjct: 311 SFCGGFDIVP---KKILMGGPMMGI--AQYTLDTPVLKH----------TNALLAFDETT 355 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 ++ K ++C +C C Sbjct: 356 AVLP---------KEQACIRCGRCVRACPM 376 >gi|307718965|ref|YP_003874497.1| transporter [Spirochaeta thermophila DSM 6192] gi|306532690|gb|ADN02224.1| transporter [Spirochaeta thermophila DSM 6192] Length = 444 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 69/374 (18%), Positives = 128/374 (34%), Gaps = 67/374 (17%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + II +K +G+ G GGAGF T +K S P D L++N E EP D Sbjct: 121 DLSPQEIIERIKDAGIVGMGGAGFPTHVKLSIPPGKAID---TLIINGVECEPYLTADHR 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M + ++ G I A+G FI + ++ V E Sbjct: 178 LMLEKTDEILVGIAIIRRALGEPRVFIGIEANKPDAIRVMKERVKEWEG----------- 226 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + V Y G E L+++L G + P K P +VG V+NV + Sbjct: 227 ----LEVRPLKVKYPQGAEKQLIKALTG-REVPSGK--LPLDVG-----CVVSNVGTAHA 274 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 V +++ ++ +++G ++ P + + ++++ G Sbjct: 275 VYRAVQKQMPLV----------ERVVTVTGNDISRPGNFLVRVGTQVEWVLDQAGGLPED 324 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + G ++P L E+ T+ ++V+ R Sbjct: 325 AGKVVAGGPMMGKALPNL----------------EVPVTKTTSGILVLPRKD-------- 360 Query: 336 LSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 E C +C C + + ++ERL + + +E + CA Sbjct: 361 -VGPRSVEPCIRCAKCVQACPMGLEPYLLERLSARERWEE--AEARGIVDCVECGS-CAY 416 Query: 394 GDAAAWPIQGLIKN 407 A+ P+ I+ Sbjct: 417 ICPASRPLLDYIRY 430 >gi|304382697|ref|ZP_07365189.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella marshii DSM 16973] gi|304336148|gb|EFM02392.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella marshii DSM 16973] Length = 452 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 111/324 (34%), Gaps = 59/324 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + II ++K +G+ G GGAGF T +K + P ++ +++NA E EP D Sbjct: 124 ELTPESIIEKIKTAGITGMGGAGFPTFIKLTPPPTAKAEC---IIINAVECEPYITSDYR 180 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M ++ G + A +I + + + K Sbjct: 181 LMMEHADEILVGLELLMKAAKVTKGYIGIEDNKPKAITLFEE---------------KTA 225 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 DI + A Y G E L++++ + Q P P NVG V NV + Sbjct: 226 GRTDIEIVPLAKKYPQGGEKQLVDAVIHR--QVPAPPAIPVNVG-----AVVQNVGTAFA 278 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V + + + + G KL +P M +LIE CGG+ G Sbjct: 279 VYQAVMKNKPLFERYTT--VTGKKL-------AHPGNFLVRMGTPMKDLIE-ACGGMPKG 328 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + LL GG + A + GT AV ++ + + + Sbjct: 329 DNKLL---AGGPMMG--KALTSADVPVCK----------GTNAVTILTDNDAGRQEV--- 370 Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360 + C +C C + Sbjct: 371 ------QPCIRCAKCVSACPMGLE 388 >gi|150006370|ref|YP_001301114.1| Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein rnfC [Bacteroides vulgatus ATCC 8482] gi|254881724|ref|ZP_05254434.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 4_3_47FAA] gi|294776233|ref|ZP_06741718.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides vulgatus PC510] gi|319643689|ref|ZP_07998306.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 3_1_40A] gi|149934794|gb|ABR41492.1| Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein rnfC [Bacteroides vulgatus ATCC 8482] gi|254834517|gb|EET14826.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 4_3_47FAA] gi|294449916|gb|EFG18431.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides vulgatus PC510] gi|317384719|gb|EFV65681.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 3_1_40A] Length = 445 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 67/366 (18%), Positives = 126/366 (34%), Gaps = 65/366 (17%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + G +S+ R + K + I+ +VK +G+ G GGA F T +K S P + Sbjct: 99 VDGDEWEESIDRS--STLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +++NA E EP D +M + ++ G I A +I + + Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIK 213 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ G I V Y G E L++++ G+ Q P Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVIGR--QVPAPPA 256 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 P NVG V NV + V ++ + ++ +++G V P Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVKNPSN 301 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 M +LI+ G VI GG + A + Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G++ V++M+ +A + + C +C C + L+ ++ + Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEAQPCIRCAKCVSVCPMGLEPF--LLATLSAHK 394 Query: 374 EIDLLY 379 + + + Sbjct: 395 DWERVE 400 >gi|212691453|ref|ZP_03299581.1| hypothetical protein BACDOR_00945 [Bacteroides dorei DSM 17855] gi|237726261|ref|ZP_04556742.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. D4] gi|212666063|gb|EEB26635.1| hypothetical protein BACDOR_00945 [Bacteroides dorei DSM 17855] gi|229434787|gb|EEO44864.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides dorei 5_1_36/D4] Length = 445 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 67/366 (18%), Positives = 126/366 (34%), Gaps = 65/366 (17%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + G +S+ R + K + I+ +VK +G+ G GGA F T +K S P + Sbjct: 99 VDGDEWEESIDRS--STLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +++NA E EP D +M + ++ G I A +I + + Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIK 213 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ G I V Y G E L++++ G+ Q P Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVIGR--QVPAPPA 256 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 P NVG V NV + V ++ + ++ +++G V P Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVRNPSN 301 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 M +LI+ G VI GG + A + Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G++ V++M+ +A + + C +C C + L+ ++ + Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEAQPCIRCAKCVNVCPMGLEPF--LLATLSAHK 394 Query: 374 EIDLLY 379 + + + Sbjct: 395 DWERVE 400 >gi|237712107|ref|ZP_04542588.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 9_1_42FAA] gi|229453428|gb|EEO59149.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 9_1_42FAA] Length = 445 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 67/366 (18%), Positives = 126/366 (34%), Gaps = 65/366 (17%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + G +S+ R + K + I+ +VK +G+ G GGA F T +K S P + Sbjct: 99 VDGDEWEESIDRS--STLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +++NA E EP D +M + ++ G I A +I + + Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTRGYIGIENNKPDAIK 213 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ G I V Y G E L++++ G+ Q P Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVIGR--QVPAPPA 256 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 P NVG V NV + V ++ + ++ +++G V P Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVRNPSN 301 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 M +LI+ G VI GG + A + Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G++ V++M+ +A + + C +C C + L+ ++ + Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEAQPCIRCAKCVNVCPMGLEPF--LLATLSAHK 394 Query: 374 EIDLLY 379 + + + Sbjct: 395 DWERVE 400 >gi|295092894|emb|CBK81985.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus sp. ART55/1] Length = 441 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 71/356 (19%), Positives = 116/356 (32%), Gaps = 71/356 (19%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 NV + R+ + +K +G+ G GGAGF +K S + D Y++VN E EP Sbjct: 112 ANVKDLSTLYREDVKEIIKEAGIVGMGGAGFPANVKLSPKNEDAID---YIIVNGAECEP 168 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D M EP LI G I I + E L+ V + Sbjct: 169 YLTSDYRRMMEEPDKLILGLEICINLFDHAKGIIAIEDNKPEAIELLRDKVKD------- 221 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 + I VH Y G E L+ + G+ ++ PA+ G V+ Sbjct: 222 --------NDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVH 265 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV++I + + G Y T++ +I+G + PC + + ELIE Sbjct: 266 NVDTIVSIYEAVIEGRPLY----------TRIVTITGDAIENPCNLMVRIGTNCQELIEA 315 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 GG +P + G M L + ++ + D Sbjct: 316 A----------------GGFKDGVVPEKVISGGPMMGKALFSLDVPATKGVSALLCMTHD 359 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384 + + + +C +C C + G + L E Sbjct: 360 EVADL-------EPSNCIRCGRCVDVCP-----------GRIVPSMLASLAEHGDT 397 >gi|167038752|ref|YP_001661737.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter sp. X514] gi|300913662|ref|ZP_07130979.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X561] gi|307723323|ref|YP_003903074.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter sp. X513] gi|166852992|gb|ABY91401.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X514] gi|300890347|gb|EFK85492.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X561] gi|307580384|gb|ADN53783.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter sp. X513] Length = 443 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 110/321 (34%), Gaps = 61/321 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + II ++ +G+ G GGAGF T +K S D ++VN E EP D Sbjct: 121 DLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKID---TILVNGAECEPYLTTDHR 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M P ++ G A+G I V +L+ A Sbjct: 178 LMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREA---------------SK 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + +I + Y G+E L+ ++ G + P P +VG+ V N + Sbjct: 223 DEKNIQIATLKVKYPQGDEKRLINAILG-RIVP--SGGLPMDVGV-----IVVNAATTKA 274 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V + G Y ++ +I+GH + P + + +LIE+ G Sbjct: 275 VADAILEGKPLY----------ERVTTITGHGIKQPKNLLVKIGTPLKDLIEQCGG---F 321 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 D+ +I GG + A + GT ++++ + Sbjct: 322 TEDSPGKIISGGPMMGI--AQHSLDVPI----------IKGTGGILILTKKE-------- 361 Query: 336 LSVFYKHESCGQCTPCREGTG 356 + + + C +C C E Sbjct: 362 -ARPEQVQPCIKCGKCVEVCP 381 >gi|330997032|ref|ZP_08320894.1| electron transport complex, RnfABCDGE type, C subunit [Paraprevotella xylaniphila YIT 11841] gi|329571530|gb|EGG53212.1| electron transport complex, RnfABCDGE type, C subunit [Paraprevotella xylaniphila YIT 11841] Length = 447 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 68/360 (18%), Positives = 127/360 (35%), Gaps = 65/360 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+N VKA+G+ G GGA F +K + ++ +++NA E EP D Sbjct: 122 ELTAEDIVNTVKAAGIVGMGGATFPCHVKLTPPKGTKAEC---VIINAVECEPYLTADHR 178 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ +P ++ G + A+G +I + L ++ A Sbjct: 179 LLLEKPDEILVGVDLIMKAVGVDKGYIGIENNKPDAIALLT---EKAKAYP--------- 226 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I V Y G E L+ ++ G+ + P P NVG V NV ++ Sbjct: 227 ---HIEVVPLQVKYPQGGEKQLIAAVTGR--EVPAPPALPINVG-----AVVQNVGTVFA 276 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + Y + ++ +++G V P + + ++LIE+ CGG+ Sbjct: 277 I----------YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIEE-CGGL-- 323 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 +N VI GG + A + G++ +++M R Sbjct: 324 -PENTGKVIGGGPMMG--KALMNLDVPVCK----------GSSGLLLMSE---------R 361 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 S + + C +C C + + E+ +++ IE C Sbjct: 362 ESRRAEPQPCIRCAKCVSACPMGLEPYLLATASALRNWELAEDNDITSCIE----CGSCQ 417 >gi|300727611|ref|ZP_07061000.1| electron transport complex protein RnfC [Prevotella bryantii B14] gi|299775131|gb|EFI71734.1| electron transport complex protein RnfC [Prevotella bryantii B14] Length = 472 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 114/355 (32%), Gaps = 64/355 (18%) Query: 8 IFTNLYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66 I N+ +S+ R + + E + I+N VK +G+ G GGAGF T +K Sbjct: 97 IIINVDEEDEW--EESIDRSDTLETLAAHPELTSEEIVNRVKVAGVTGMGGAGFPTFIKL 154 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 P ++ ++++NA E EP D +M ++ G + A FI + Sbjct: 155 CPPPTAKAE---FVIINAVECEPYITSDYRLMMEHADEILVGVELLMKAAKVDKGFIGIE 211 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 L + C I V Y G E L++++ G+ Sbjct: 212 ENKPEAIRLLT---ELCKEHAG------------IEVVPLKTKYPQGGEKQLVDAVVGR- 255 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 Q P P NVG V NV + V Y + + +++G Sbjct: 256 -QVPAPPAIPVNVG-----AIVQNVGTAYAV----------YQAVMKNKPLFERYTTVTG 299 Query: 247 -HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305 H+ P M +LIE G L G +V L + Sbjct: 300 KHIKNPSNFLVRMGTPMSQLIEACGGLPDDDNKVLAGGPMMGKAVISL------DVPVCK 353 Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 GT A+ V+ K ++C +C C E + Sbjct: 354 ----------GTNAITVLTGKDAHRKEA---------QACIRCGKCVEACPMGLE 389 >gi|315186451|gb|EFU20211.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta thermophila DSM 6578] Length = 444 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 72/374 (19%), Positives = 132/374 (35%), Gaps = 67/374 (17%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + II +K +G+ G GGAGF T +K S P D L++N E EP D Sbjct: 121 DLSPQEIIERIKEAGIVGMGGAGFPTHVKLSIPPGKEID---TLIINGVECEPYLTADHR 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M + ++ G + A+G FI + + ++ V E Sbjct: 178 LMLEKTDEILVGISLIRKALGGPRVFIGIEANKPDAIKVMRERVKEWEG----------- 226 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + V Y G E L+++L G + P K P +VG V+NV + Sbjct: 227 ----MEVRPLKVKYPQGAEKQLIKALTG-REVPSGK--LPLDVG-----CVVSNVGTAHA 274 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 V +++G ++ +++G H++ P + + + + G Sbjct: 275 VYRAVQKGIPLV----------ERVVTVTGKHLSRPGNFFLRVGTPLEWVFSQLGGLPAD 324 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + G ++P L E+ T+ ++V+ R + + R Sbjct: 325 TGKVIAGGPMMGKALPNL----------------EVPVTKTTSGILVLPRE----EVVRR 364 Query: 336 LSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393 E C +C C + + ++ERL + V +E + CA Sbjct: 365 PV-----EPCIRCAKCVQACPMGLEPYLLERLSARERWEE--AEARGVVDCVECGS-CAY 416 Query: 394 GDAAAWPIQGLIKN 407 A+ P+ I+ Sbjct: 417 ICPASRPLLDYIRY 430 >gi|167767284|ref|ZP_02439337.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1] gi|167711259|gb|EDS21838.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1] Length = 450 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 106/322 (32%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + +D ++ +K +G+ G GGAGF T +K + D Y++VN E EP D Sbjct: 129 QMSKDDVLAAIKEAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 I+ P LIEG I I + ++A V Sbjct: 186 ILMETPELLIEGLNIVLDMFPKAKGIIGIEDNKKDAIAKVEALVKG-------------- 231 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I V Y G E +L+ + G+ + PA+ G V+NV +I Sbjct: 232 -DARISVATLKTKYPQGAERSLIYATTGRSINSSM---LPADAG-----CIVDNVATIVA 282 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + ++ G Y ++ +++G + P + ELIE G Sbjct: 283 IKEAVKDGKPLY----------ERVVTVTGDAIKNPSNFKVRTGTNVQELIEAAGG---- 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 +I GG M G M + + + + + + + Sbjct: 329 FKTQPEKIISGGP---------MMGMAMFTTDVPAVKTF---SCFLAFTKD----EVAAN 372 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 + +C +C C Sbjct: 373 -----QPSNCIRCGRCVSVCPQ 389 >gi|332879376|ref|ZP_08447073.1| electron transport complex, RnfABCDGE type, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682796|gb|EGJ55696.1| electron transport complex, RnfABCDGE type, C subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 447 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 68/360 (18%), Positives = 128/360 (35%), Gaps = 65/360 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + I+N+VKA+G+ G GGA F +K + ++ +++NA E EP D Sbjct: 122 ELTAEDIVNKVKAAGIVGMGGATFPCHVKLTPPKGTKAEC---VIINAVECEPYLTADHR 178 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M +P ++ G + A+G +I + L ++ A Sbjct: 179 LMLEKPDEILVGVDLIMKAVGVDKGYIGIENNKPDAIALLT---EKAKAYS--------- 226 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + Y G E L+ ++ G+ + P P NVG V NV ++ Sbjct: 227 ---HIEIVPLQVKYPQGGEKQLIAAVTGR--EVPAPPALPINVG-----AVVQNVGTVFA 276 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + Y + ++ +++G V P + + ++LIE+ CGG+ Sbjct: 277 I----------YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIEE-CGGL-- 323 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 +N VI GG + A + G++ +++M R Sbjct: 324 -PENTGKVIGGGPMMG--KALMNLDVPVCK----------GSSGLLLMSE---------R 361 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 S + + C +C C + + E+ +++ IE C Sbjct: 362 ESRRAEPQPCIRCAKCVSACPMGLEPYLLATASALRNWELAEENDITSCIE----CGSCQ 417 >gi|265751808|ref|ZP_06087601.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 3_1_33FAA] gi|263236600|gb|EEZ22070.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp. 3_1_33FAA] Length = 445 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 66/366 (18%), Positives = 124/366 (33%), Gaps = 65/366 (17%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + G +S+ R + K + I+ +VK +G+ G GGA F T +K S P + Sbjct: 99 VDGDEWEESIDRS--STLVKECAFTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +++NA E EP D +M + ++ G I A +I + + Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIK 213 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ G I V Y G E L++++ + Q P Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVISR--QVPAPPA 256 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 P NVG V NV + V ++ + ++ +++G V P Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVKNPSN 301 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 M +LI+ G VI GG + A + Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G++ V++M+ +A + C +C C + L+ ++ + Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEESPCIRCAKCVSVCPMGLEPF--LLATLSAHK 394 Query: 374 EIDLLY 379 + + + Sbjct: 395 DWERVE 400 >gi|317497311|ref|ZP_07955634.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA] gi|316895380|gb|EFV17539.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA] Length = 438 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 106/322 (32%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + +D ++ +K +G+ G GGAGF T +K + D Y++VN E EP D Sbjct: 117 QMSKDDVLAAIKEAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 173 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 I+ P LIEG I I + ++A V Sbjct: 174 ILMETPELLIEGLNIVLDMFPKAKGIIGIEDNKKDAIAKVEALVKG-------------- 219 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I V Y G E +L+ + G+ + PA+ G V+NV +I Sbjct: 220 -DARISVATLKTKYPQGAERSLIYATTGRSINSSM---LPADAG-----CIVDNVATIVA 270 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + ++ G Y ++ +++G + P + ELIE G Sbjct: 271 IKEAVKDGKPLY----------ERVVTVTGDAIKNPSNFKVRTGTNVQELIEAAGG---- 316 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 +I GG M G M + + + + + + + Sbjct: 317 FKTQPEKIISGGP---------MMGMAMFTTDVPAVKTF---SCFLAFTKD----EVAAN 360 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 + +C +C C Sbjct: 361 -----QPSNCIRCGRCVSVCPQ 377 >gi|291559406|emb|CBL38206.1| electron transport complex, RnfABCDGE type, C subunit [butyrate-producing bacterium SSC/2] Length = 438 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 106/322 (32%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + +D ++ +K +G+ G GGAGF T +K + D Y++VN E EP D Sbjct: 117 QMSKDDVLAAIKEAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 173 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 I+ P LIEG I I + ++A V Sbjct: 174 ILMETPELLIEGLNIVLDMFPKAKGIIGIEDNKKDAIAKVEALVKG-------------- 219 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I V Y G E +L+ + G+ + PA+ G V+NV +I Sbjct: 220 -DARISVATLKTKYPQGAERSLIYATTGRSINSSM---LPADAG-----CIVDNVATIVA 270 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + ++ G Y ++ +++G + P + ELIE G Sbjct: 271 IKEAVKDGKPLY----------ERVVTVTGDAIKNPSNFKVRTGTNVQELIEAAGG---- 316 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 +I GG M G M + + + + + + + Sbjct: 317 FKTQPEKIISGGP---------MMGMAMFTTDVPAVKTF---SCFLAFTKD----EVAAN 360 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 + +C +C C Sbjct: 361 -----QPSNCIRCGRCVSVCPQ 377 >gi|331268942|ref|YP_004395434.1| RnfABCDGE type electron transport complex subunit C [Clostridium botulinum BKT015925] gi|329125492|gb|AEB75437.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum BKT015925] Length = 440 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 66/332 (19%), Positives = 120/332 (36%), Gaps = 62/332 (18%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 G + + ++ II VK +G+ G GGA F T +K + P D +++N E Sbjct: 108 GEFTKPKNYTDMTKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAE 164 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EP D +M E + ++EG I +I + E+L+ A + Sbjct: 165 CEPYLTCDHRLMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDI--- 221 Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 +I V Y G E L+ S+ K+ P K PA+ G Sbjct: 222 ------------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----C 261 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDEL 265 V NV ++ V + G +++ +++G V P + + +++ EL Sbjct: 262 IVQNVNTVREVYNAVVNG----------RPTTSRVVTVTGEAVKNPKNLRVRLGMSYREL 311 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 +E G ++ + VI GG + M L ++ G++ ++ + Sbjct: 312 VEACDG----FKEDPVKVISGGPMMG-----------MGISTL-DVPVIKGSSGILCLTE 355 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 ++ SC +C C E Sbjct: 356 KQAVLP---------DESSCIRCGRCAEVCPM 378 >gi|323704921|ref|ZP_08116498.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535847|gb|EGB25621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 455 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 117/323 (36%), Gaps = 60/323 (18%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 D + N V +G+ G GGAGF T K + +++N E EP DR + Sbjct: 1 MNIDELKNIVFENGIVGAGGAGFPTHAKLTT-------GIDTIILNGAECEPLLRVDRQL 53 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 + ++ +GA + A+ Y + + + +G Sbjct: 54 LAIYTDEILMTLSFVVDTLGARSGIV---------------AIKSAYKAAIDSVKNLIGN 98 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++ + Y G+E L+ G + P + P +VG T V NVE++ V Sbjct: 99 YKNLELKVLPDVYPAGDEVVLIYETTG-RIVP--EGSIPISVG-----TIVMNVETVLNV 150 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 Y+ ++ K +++G+V P T + + + ELIEK G + + Sbjct: 151 ----------YNAIYLKHPVTEKYVTVTGNVKCPSTFKVKVGTSVAELIEKAGGCLEEDY 200 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRL 336 + VI GG + ++ T A+IV+ + +I K + Sbjct: 201 E----VIMGGPMTGKIVD-------------RKAPITKTTKAIIVLPKDHPVITKRKTNI 243 Query: 337 SVFYKHE--SCGQCTPCREGTGW 357 S+ K C QC C + Sbjct: 244 SIELKRAMSVCSQCQMCTDLCPR 266 >gi|302389269|ref|YP_003825090.1| electron transport complex, RnfABCDGE type, C subunit [Thermosediminibacter oceani DSM 16646] gi|302199897|gb|ADL07467.1| electron transport complex, RnfABCDGE type, C subunit [Thermosediminibacter oceani DSM 16646] Length = 438 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 122/352 (34%), Gaps = 66/352 (18%) Query: 29 WDNVD--KIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 ++ V K L E D I N ++ +G+ G GGAGF T +K S D ++VN Sbjct: 107 YEGVKPPKSLDEMTPDEIKNLIREAGIVGMGGAGFPTQVKLSPPAGKTID---TIIVNGA 163 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P ++ G A G A+I + +++ AV Sbjct: 164 ECEPYLTADHRLMVERPDDVVLGLRAIMKATGVEKAYIGIEDNKPDAIKAMNDAVKGFKG 223 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 I V A Y G E L+ ++ G + P P +V Sbjct: 224 ---------------IEVVPLATKYPQGGEKQLIYAITG-REVPSGGLPMDVHV------ 261 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 V+N + A + +L+ G G V P + + EL Sbjct: 262 -IVDNAGTCAAIANVLKTGMPLIERITTVTGSG---------VKEPKNLMVRIGTPVGEL 311 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 IE+ CGG G VI GG + E+ GT+ V+V+ + Sbjct: 312 IEQ-CGGFNGEPGK---VIMGGPMMGV------------SQSQLEVPVIKGTSGVLVLKK 355 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERL-VKGIAQKRE 374 S ++ C +C C + + + +L +G+ + E Sbjct: 356 SE---------VKLFEPMPCIRCARCVDACPIHLLPTYLGKLAERGMWVEAE 398 >gi|160879334|ref|YP_001558302.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridium phytofermentans ISDg] gi|160428000|gb|ABX41563.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium phytofermentans ISDg] Length = 442 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 64/325 (19%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + + VK G+ G GGAGF T K+S ++ +++N E EP R + Sbjct: 2 MVIEELSQIVKEYGICGAGGAGFPTYAKFS-------NKVDTIILNCAECEPLLKLHRQL 54 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 +R + +++ I + +IGA A I V+ + +++A + G Sbjct: 55 LRDRAYEVLKAFSIIAESIGAKEAIIVVKPSYKNTIAAVEAEI---------------GA 99 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++ + Y G+E L+ G+ +P P ++G+ V NVE++ V Sbjct: 100 YKNMSLKLCKEVYPAGDEVVLIYEATGRVVKP---GGLPVDIGV-----AVFNVETVYNV 151 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 Y +KL S+ G V P TV + +T E++E G Sbjct: 152 ----------YEAVINHRPVTSKLVSVVGEVKEPKTVRVPLGMTVKEVVEMVGGITTKEP 201 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 A + GG + + + Q + A+IV+ + +I I + S Sbjct: 202 ----AYLMGGPMMGSVESEQHLIT-------------KTSNAIIVLPKDHYVI--IRKES 242 Query: 338 VF-----YKHESCGQCTPCREGTGW 357 SC C C + Sbjct: 243 KPSIDLKRAAASCCHCEMCTDLCPR 267 >gi|325570424|ref|ZP_08146201.1| electron transport complex protein RnfC [Enterococcus casseliflavus ATCC 12755] gi|325156634|gb|EGC68811.1| electron transport complex protein RnfC [Enterococcus casseliflavus ATCC 12755] Length = 445 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 74/356 (20%), Positives = 123/356 (34%), Gaps = 70/356 (19%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 I N Y Q LS W + + I+N+++ G+ G+GGA F T +K+S Sbjct: 101 IIENDYAYQNDFLSAPF---DWQSAAN------ETILNKIRQGGVAGKGGATFPTHVKFS 151 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 + + H L++N E EP D +M+ E +I G IA + I + Sbjct: 152 I---DETQKIHTLILNGSECEPFLRSDAFLMQKEAQKIIHGAKIAQKLLDGPKIIIGIED 208 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 + R ++QAA D I V Y G E L+E L ++ Sbjct: 209 DKPRAISAMQAA---------------SAEDDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 A++G+ + NV + + + + + +++G Sbjct: 254 ---PLGGLTADIGI-----VLINVATSFAIAEAVCY----------DKPLIERYTTVTGD 295 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 V PC V+ + ELI+ G +L G SV L Sbjct: 296 VQNPCIVKNPLGTLAGELIDFAGGFQGAPSKLILGGPMMGKSVKTL-------------- 341 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 ++ G+ ++V + TD Y C +C C E + ME Sbjct: 342 --KVPVTKGSNGIVVFNEETD---------WLYAENPCIRCNKCVEACPMRLMPME 386 >gi|302559184|ref|ZP_07311526.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F [Streptomyces griseoflavus Tu4000] gi|302476802|gb|EFL39895.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F [Streptomyces griseoflavus Tu4000] Length = 328 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 24/237 (10%) Query: 13 YGLQGKSL-SDSMSRGHWDNVDKILEKGRDW-------------IINEVKASGLRGRGGA 58 GL L +D + G + LE+ ++ V+A+GL GRGGA Sbjct: 19 GGLDDVRLLADWYATGRPATLADHLERHGPPPVTAAGGSPPSVPLVEAVEAAGLTGRGGA 78 Query: 59 GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118 GF T K + VVNA ESEP + KD+ ++ PH +++G V+A+ A+GA Sbjct: 79 GFPTARKLRAVAGRRRRAVV--VVNAMESEPASRKDQFLLAVAPHLVLDGAVLAASAVGA 136 Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETAL 178 + + + + + AA+DE + L H Y+ E TAL Sbjct: 137 DTVHVCLPRDRPAQYRRMDAALDERRRARLDRVRLLA--------HALPHTYVSSESTAL 188 Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 + L G +P+ PP G+ PT V+N E++A + I R G W+ G Sbjct: 189 VHWLNGGPARPQGGPPGNRERGVDRRPTLVSNAETLAHLALIARHGPGWFRRLGTRG 245 >gi|148378371|ref|YP_001252912.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. ATCC 3502] gi|148287855|emb|CAL81921.1| electron transport complex protein [Clostridium botulinum A str. ATCC 3502] Length = 439 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A + Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V N ++ Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G V P + + EL+E CGG + Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + VI GG + M L ++ + G++ ++ + + ++ Sbjct: 321 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTTAQAVLPQA-- 363 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 SC +C C E Sbjct: 364 -------SSCIRCGRCVEACPM 378 >gi|170755456|ref|YP_001780021.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum B1 str. Okra] gi|169120668|gb|ACA44504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum B1 str. Okra] Length = 439 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A + Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V N ++ Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G V P + + EL+E CGG + Sbjct: 272 IYNAVVLG----------RPLTERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + VI GG + M L ++ + G++ ++ + + ++ Sbjct: 321 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTAAQAVLPQA-- 363 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 SC +C C E Sbjct: 364 -------SSCIRCGRCVEACPM 378 >gi|168177711|ref|ZP_02612375.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum NCTC 2916] gi|182670754|gb|EDT82728.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum NCTC 2916] Length = 439 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A + Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V N ++ Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G V P + + EL+E CGG + Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + VI GG + M L ++ + G++ ++ + + ++ Sbjct: 321 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTTAQAVLPQA-- 363 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 SC +C C E Sbjct: 364 -------SSCIRCGRCVEACPM 378 >gi|153938550|ref|YP_001389736.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum F str. Langeland] gi|168181230|ref|ZP_02615894.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Bf] gi|170759143|ref|YP_001785705.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A3 str. Loch Maree] gi|226947599|ref|YP_002802690.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A2 str. Kyoto] gi|237793688|ref|YP_002861240.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Ba4 str. 657] gi|152934446|gb|ABS39944.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum F str. Langeland] gi|169406132|gb|ACA54543.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A3 str. Loch Maree] gi|182675506|gb|EDT87467.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Bf] gi|226843244|gb|ACO85910.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A2 str. Kyoto] gi|229260411|gb|ACQ51444.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum Ba4 str. 657] gi|295317824|gb|ADF98201.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum F str. 230613] Length = 439 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A + Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V N ++ Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G V P + + EL+E CGG + Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + VI GG + M +D +K G++ ++ + + ++ Sbjct: 321 DP---VKVISGGPMMG------MTIPTLDIPTVK------GSSGLLSLTAAQAVLPQA-- 363 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 SC +C C E Sbjct: 364 -------SSCIRCGRCVEACPM 378 >gi|332799823|ref|YP_004461322.1| RnfABCDGE type electron transport complex subunit C [Tepidanaerobacter sp. Re1] gi|332697558|gb|AEE92015.1| electron transport complex, RnfABCDGE type, C subunit [Tepidanaerobacter sp. Re1] Length = 440 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 122/345 (35%), Gaps = 63/345 (18%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 I + +D I N ++ +G+ G GGAGF T +K S P+ D ++VNA E EP Sbjct: 114 KPIEQLTQDEIKNLIREAGITGLGGAGFPTQVKLSVPPEKNID---TIIVNAAECEPYIT 170 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D ++ P +I G A G +FI + +S+ A+ Sbjct: 171 ADHRLLLERPEDVIFGLEAIMKATGVKKSFIGIEDNKPDAIDSISKAIAGKKG------- 223 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 I V A Y G E L++++ G++ P +VG+ VNN Sbjct: 224 --------IEVVVLATKYPQGGEKQLIKAVTGREV---PSGGLPMDVGV-----IVNNAG 267 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 + A + + L+ G G + P + + + ++IE+ G Sbjct: 268 TCAAIASALKTGMPLIERITTVTGSG---------IKEPKNLLIRIGTSLIDIIEQCGGF 318 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 L GG + A + GT+ ++V+++S Sbjct: 319 KGIPGKVL----MGGPMMGL--AQSELDVP----------AIKGTSGILVLEKSD----- 357 Query: 333 IWRLSVFYKHESCGQCTPCREGTG--WMMRVMERL-VKGIAQKRE 374 ++ C +C C + + + + +G+ + E Sbjct: 358 ----VKLFEPSPCIRCARCVDACPINLLPTNLAKFTERGMWAEAE 398 >gi|32394530|gb|AAM93963.1| NADH dehydrogenase [Griffithsia japonica] Length = 170 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 59/114 (51%), Positives = 77/114 (67%), Gaps = 2/114 (1%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA-GF 60 L+D+DRIFTNLY L +M RG W +++ GR WI++E+KA R GA GF Sbjct: 57 LSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGAPGF 116 Query: 61 STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 +G+K+SFMP D YLVVNADESEPGTCKDR+I+R +PH L+EGC++ Sbjct: 117 PSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLLVG 170 >gi|153872669|ref|ZP_02001494.1| Electron transport complex protein rnfC [Beggiatoa sp. PS] gi|152070866|gb|EDN68507.1| Electron transport complex protein rnfC [Beggiatoa sp. PS] Length = 446 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 72/345 (20%), Positives = 120/345 (34%), Gaps = 60/345 (17%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 + + IN V+ +G+ G GGA F + +K++ + +LV+N E EP Sbjct: 123 DWMALSIEEFINHVQKAGIVGMGGAAFPSHVKYAL---PDGMQIKHLVINGAECEPYLTN 179 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 D +M P TL+ G I +GA A I V +LQ +D+ Sbjct: 180 DHRLMLERPDTLLRGIEIVRQKLGATQATIGVELNKTDAINTLQKHIDQQQIK------- 232 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 +I + Y G E +++SL + P P +VG+ TVNNV + Sbjct: 233 ------NIRMVPLRVKYPQGAEKMMIKSLFNIEIPP---GQLPRDVGV-----TVNNVST 278 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 I + G + G V P + + E++ + CGG+ Sbjct: 279 IVAIADYFETGMPLIERIVTVSGPG---------VEQPANLMVPLGTPAREVL-RFCGGL 328 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 + + +VI GG + +P + I+ G++ ++ Sbjct: 329 K---ETTRSVIMGGPMMG-MPIASLDVPIL-----------KGSSGILAFTDEETGKP-- 371 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRV--MERLVKGIAQKREID 376 K SC C C E + + RL K D Sbjct: 372 -------KEYSCIHCGRCVEACPHFLNPSRLARLSKKRRYTEMTD 409 >gi|309389502|gb|ADO77382.1| electron transport complex, RnfABCDGE type, C subunit [Halanaerobium praevalens DSM 2228] Length = 441 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 118/325 (36%), Gaps = 62/325 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + + I ++ +G+ G GGA F T +K + D Y+++N E EP D Sbjct: 119 DLSQAEIRKIIREAGIVGMGGAMFPTHVKVTIPEDKNVD---YVILNGAECEPYLTVDHR 175 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M P +++ G A GA A I + S++ A + Sbjct: 176 VMVERPESIVFGLKALMKASGAPKAIIGIEDNKPEAIASMEDACESEN------------ 223 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+E+L G++ P +VG+ VNN + A Sbjct: 224 ---NIKVQAVETKYPQGGEKMLIEALIGREV---PAGGLPLDVGV-----VVNNTSTSAA 272 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V +R G Y + SI+G +N P + + +L+E+ G Sbjct: 273 VADAIRDGKPLY----------ERSISITGRGINKPQNLIFRVGTNIGDLVEEAGG---- 318 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 DN VI GG + A + + GT+ ++V+ S ++A Sbjct: 319 LKDNAAKVITGGPMMGA--AQKNLNIP----------AVKGTSGILVLIESE--VEA--- 361 Query: 336 LSVFYKHESCGQCTPCREGTGWMMR 360 Y+ C C C + + Sbjct: 362 ----YEPSPCINCAKCVDACPMFLM 382 >gi|153931630|ref|YP_001382770.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. ATCC 19397] gi|153936091|ref|YP_001386321.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. Hall] gi|152927674|gb|ABS33174.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. ATCC 19397] gi|152932005|gb|ABS37504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum A str. Hall] Length = 439 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A + Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V N ++ Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G V P + + EL+E CGG + Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + VI GG + M +D +K G++ ++ + + ++ Sbjct: 321 DP---VKVISGGPMMG------MTIPTLDIPTVK------GSSGLLSLAAAQAVLPQA-- 363 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 SC +C C E Sbjct: 364 -------SSCIRCGRCVEACPM 378 >gi|261880457|ref|ZP_06006884.1| electron transport complex [Prevotella bergensis DSM 17361] gi|270332796|gb|EFA43582.1| electron transport complex [Prevotella bergensis DSM 17361] Length = 449 Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 114/321 (35%), Gaps = 59/321 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E + IIN +K +G+ G GGAGF T +K P ++ +++N E EP D Sbjct: 124 ELTSEDIINRLKVAGVTGMGGAGFPTFIKLMPPPGAKAEC---IIINGVECEPYITSDYR 180 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M +I G + ++ A+I + + + K Sbjct: 181 LMMEHADEIIVGVQLLMKSVHVDKAYIGIEENKPKAIALMTE---------------KAA 225 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I V A Y G E L+ ++ G+ + P P NVG Sbjct: 226 SDSRIKVVPLAQKYPQGGEKQLVAAVIGR--EVPAPPAIPVNVG---------------A 268 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 +P + + Y + + S+SG + +P M +F +LIE CGG+ Sbjct: 269 IPVNVGTTFAVYQAVMKNKPLFERYTSVSGKQIKHPGNFLVRMGTSFGQLIE-ACGGMPD 327 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G + V+ GG + A + GT +V V+ A + Sbjct: 328 GDNK---VLAGGPMMG--KAVMNLDVPVCK----------GTNSVTVLTGD----DARRK 368 Query: 336 LSVFYKHESCGQC-TPCREGT 355 + CG+C T C G Sbjct: 369 VIQPCIR--CGKCVTVCPMGL 387 >gi|227499954|ref|ZP_03930047.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus tetradius ATCC 35098] gi|227218063|gb|EEI83336.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus tetradius ATCC 35098] Length = 441 Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 59/357 (16%), Positives = 120/357 (33%), Gaps = 56/357 (15%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + + I+ ++K +G+ G GGA F +K+ KV ++VN E EP D Sbjct: 119 DLSAEEIVAKIKEAGIVGMGGAAFPAHIKYMPAKKVD-----TVIVNGAECEPYITCDDY 173 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M++ P +++G A A+ A + + + ES+ A+ E Sbjct: 174 LMKNRPQRILKGLTQAIKAVNADRGIVAIEDNKPKAYESMTKALAEFAKEN--------- 224 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + +I + Y G+E +++ ++ P +VG V+NV ++ Sbjct: 225 SNFNIEIKQLETKYPQGDEKRMIDVTLNRQV---PSGGLPMDVG-----AIVSNVSTMHA 276 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + Y + ++ +++G V P + F IE+ G Sbjct: 277 I----------YEAIYMDKPLYERIVTVTGKSVKNPTNMLVRCGTEFGHCIEEAGGA--- 323 Query: 276 GWDNLLAVIPGGSSVPCL------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 D++ ++ GG P + I+ + + Sbjct: 324 --DDIAKLVNGGPMCGIAQPDLNRPVEKASNCILVLASDQAQPLEVSPCIRCARCVDACP 381 Query: 330 IKAI-WRLSVFYKHES-----------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 + + + F E C +C C ++E + G Q R+ Sbjct: 382 VYLLPLYIHKFSLEERFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGKRQIRQ 438 >gi|255505205|ref|ZP_05344409.3| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella formatexigens DSM 14469] gi|255269627|gb|EET62832.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella formatexigens DSM 14469] Length = 672 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 106/322 (32%), Gaps = 67/322 (20%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D I+ V+ +G+ G GGAGF T +K +++N E EP D Sbjct: 359 ELTPDEIVEIVREAGIVGMGGAGFPTSVKLK-----PPKPIDTILLNGCECEPYLTADHR 413 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ +I G + A I + E +QA +C Sbjct: 414 VLLEFADDVIYGLKAIIKTVNAEKGLIVIEDNKPDAIELMQAKTADCD------------ 461 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L++ + G + PR PA+VG V+N+ + Sbjct: 462 ---NIEVVVAKTKYPQGAEKMLIKRVMG-RQVPRGG--LPADVG-----CVVSNISTTKA 510 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + +++G ++ +++G V P + +LI +CGG+ G Sbjct: 511 ISDAIQKGMPLI----------ERVVTVTGERVKKPGNYIVKIGTNTKDLI-DYCGGLVG 559 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + GG + + G+ +I +D + Sbjct: 560 DDITIK---AGGPMMGFVLKDTNVPI------------MKGSNGIIAIDTDYSV------ 598 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 + C +C C + Sbjct: 599 ------EQPCIKCGRCVDVCPM 614 >gi|322804644|emb|CBZ02196.1| electron transport complex protein RnfC [Clostridium botulinum H04402 065] Length = 403 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ II ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 82 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 138 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A + Sbjct: 139 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 186 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V N ++ Sbjct: 187 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 235 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G V P + + EL+E CGG + Sbjct: 236 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 284 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + VI GG + M L ++ + G++ ++ + + ++ Sbjct: 285 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTAAQAVLPQA-- 327 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 SC +C C E Sbjct: 328 -------SSCIRCGRCVEACPM 342 >gi|253682064|ref|ZP_04862861.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum D str. 1873] gi|253561776|gb|EES91228.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium botulinum D str. 1873] Length = 439 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 116/326 (35%), Gaps = 62/326 (19%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 E ++ I+ VK +G+ G GGA F T +K + P D +++N E EP Sbjct: 114 KDYTEMTKEEIVELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAECEPYLT 170 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D +M E + ++EG I +I + E+L+ A + Sbjct: 171 CDHRLMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDI--------- 221 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 +I V Y G E L+ S+ K+ P K PA+ G V NV Sbjct: 222 ------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----CIVQNVN 267 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271 ++ V + G +++ +++G V P + + +++ EL+E G Sbjct: 268 TVREVYNAVVNG----------RPTISRVVTVTGEAVKNPKNLRVRLGMSYRELVEACDG 317 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 ++ + VI GG + A + G++ ++ + ++ Sbjct: 318 ----FKEDPVKVISGGPMMGM--AVSTLDVPV----------IKGSSGILCLTEKQAVLP 361 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGW 357 SC +C C + Sbjct: 362 ---------DESSCIRCGRCVKACPM 378 >gi|51947515|gb|AAU14242.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus ovalis] Length = 110 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 71/110 (64%), Positives = 84/110 (76%) Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 KL+S+SGH+N PCTVE+ MSI+ ELIE+H GG+RGGWDNLL VIPGGSS P + Sbjct: 1 KLYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCE 60 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 A+MD+D L E GS GTA VIV+D+STD+I AI RLS FY ESCGQCT Sbjct: 61 TALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLRESCGQCT 110 >gi|229815898|ref|ZP_04446222.1| hypothetical protein COLINT_02954 [Collinsella intestinalis DSM 13280] gi|229808593|gb|EEP44371.1| hypothetical protein COLINT_02954 [Collinsella intestinalis DSM 13280] Length = 447 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 65/357 (18%), Positives = 108/357 (30%), Gaps = 55/357 (15%) Query: 31 NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90 + ++ I V+ SG+ G GGA F T W M +LVVNA E EP Sbjct: 109 ALKPPTYSNKEEFIACVRDSGMVGLGGASFPT---WFKMRAPEGKSFEFLVVNAMECEPY 165 Query: 91 TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150 D M +I+G A+ A I V L+ V E Sbjct: 166 ITSDYRQMMEHSERVIDGVFRTIEALEIPAAVIGVEDNKPEAILELKRVVKE-------- 217 Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210 G + I V Y G E L+++ G+ P +VG V N Sbjct: 218 ----KGREDRIEVMEIPTKYPAGGEKVLIKATTGRDV---PAGGLPIDVG-----CLVVN 265 Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269 V +I+ V R G K +++G + P + ++ ++IE Sbjct: 266 VTTISRVEQYFRYGMPLTC----------KTVTVTGDCIANPGNYRIPLGMSVRDVIEAT 315 Query: 270 CGGIRGGWDNLLAVIPGGSSVP-CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 G ++ +I GG + + + + + + + Sbjct: 316 GGMVKEP----KKIIMGGPMMGRTITNIDCPILKANNAIVALHDAAVLPDETACIRCGRC 371 Query: 329 IIKAIWRLSVFYKHE----------------SCGQCTPCREGTGWMMRVMERLVKGI 369 + L F +C +C C R+ + +G Sbjct: 372 VRACPLALEPFALDSASRSHDVVALDELAVMNCMECGSCAYVCPAHRRITASIREGK 428 >gi|281178701|dbj|BAI55031.1| putative transport protein [Escherichia coli SE15] Length = 806 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|325299904|ref|YP_004259821.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides salanitronis DSM 18170] gi|324319457|gb|ADY37348.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides salanitronis DSM 18170] Length = 445 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 115/330 (34%), Gaps = 61/330 (18%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + K + I+ ++K +G+ G GGA F T +K + P ++ +++NA E EP Sbjct: 114 LVKECNLTPEEIVTKIKNAGVVGMGGACFPTHVKLTPPPGCKAEC---VIINAVECEPYL 170 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +M +P ++ G I A + A+I + L A+G G Sbjct: 171 TADHRLMLEKPDEILVGVSILMKAAKVNQAYIGIENNKPDAIRLLTE-----KAAGYPG- 224 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 I V Y G E L++++ G+ Q P P NVG V NV Sbjct: 225 ---------IEVVPLKVKYPQGGEKQLIDAIIGR--QVPAPPAIPINVG-----AIVQNV 268 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270 ++ V ++ + ++ +++G + P M +LIE Sbjct: 269 GTVYAVYEAVQ----------KNKPLFERIVTVTGKSLKNPSNFLTRMGTPMSQLIEAAG 318 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 G VI GG + A + G++ V++M+ Sbjct: 319 GLPEDTGK----VIGGGPMMG--KALMNIEVPICK----------GSSGVLIMND----- 357 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 K R + C +C C + Sbjct: 358 KEARR----GAPQPCIRCAKCVSVCPMGLE 383 >gi|260437062|ref|ZP_05790878.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio crossotus DSM 2876] gi|292810371|gb|EFF69576.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio crossotus DSM 2876] Length = 439 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 63/344 (18%), Positives = 120/344 (34%), Gaps = 63/344 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E +D II ++ +G+ G GGAGF T +K S +D ++VN E EP D Sbjct: 118 ELSKDEIIKIIEEAGIVGMGGAGFPTNVKLS---PKNADIIDSIIVNGAECEPYLTSDYR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M + L++G I + + E+L A + Sbjct: 175 RMVEQTDKLVKGLKIVLKIFPDAKGYFGIEDNKPEAIEALLKATEN-------------- 220 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + I V Y G E +++ ++ G+K ++ PA+VG V+NV++I Sbjct: 221 -EDRIEVVPLKTKYPQGGERSMIYAVTGRKINSKM---LPADVG-----CIVHNVDTIYA 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +I+G V+ P + + F ELI+ G Sbjct: 272 IYNAVYNG----------KPLIERIVTITGDAVSTPKNFQVRIGTPFRELIDAAGGFTTE 321 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 +I GG + + + G+++++ + Sbjct: 322 PEK----IISGGPMMGF--SFFNIDVPV----------VKGSSSLLAFIKDD-------- 357 Query: 336 LSVFYKHESCGQCTPCREGTGW-MMRVMERLVKGIAQKREIDLL 378 + +C +C C ++ + + G + E L Sbjct: 358 -VSHEEPSACIRCGRCAAACPEHLLPMKLAALAGQNEPEEFKKL 400 >gi|301026785|ref|ZP_07190189.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 69-1] gi|300395323|gb|EFJ78861.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 69-1] Length = 804 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|324006984|gb|EGB76203.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 57-2] Length = 808 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|153809956|ref|ZP_01962624.1| hypothetical protein RUMOBE_00337 [Ruminococcus obeum ATCC 29174] gi|149834134|gb|EDM89214.1| hypothetical protein RUMOBE_00337 [Ruminococcus obeum ATCC 29174] Length = 583 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 67/322 (20%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D II+ VK +G+ G GGAGF T + + +++N E EP D Sbjct: 270 ELTPDEIIDIVKEAGIVGMGGAGFPT-----CVKLKPAKPVDTILLNGCECEPYLTADHK 324 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ +I G GA I + E ++ V + Sbjct: 325 VLLEFADDIIFGLKAILKTTGAEKGIIVIEDNKPDAIELMKEKVADIG------------ 372 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 ++ V Y G E L++ + G+K PA+VG+ V+N+ ++ Sbjct: 373 ---NMEVFVARTKYPQGAEKTLIKRVMGRKV---PSGGLPADVGV-----IVDNISTVKA 421 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + +++G ++ +I+G + P + + +LI +CGG Sbjct: 422 ISDAIQKGMPLI----------ERVTTITGEKIKNPGNFIIKIGTSVKDLI-DYCGGFTD 470 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + GG + M G+ +I +D Sbjct: 471 DDVLVKM---GGPMMGF--PLNTLDVPM----------MKGSNGIIAID----------- 504 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 + K + C +C C + Sbjct: 505 -TDETKEQPCIKCGRCVDVCPM 525 >gi|218699803|ref|YP_002407432.1| electron transport complex protein RnfC [Escherichia coli IAI39] gi|226735439|sp|B7NU04|RNFC_ECO7I RecName: Full=Electron transport complex protein rnfC gi|218369789|emb|CAR17560.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli IAI39] Length = 740 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHKFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|332653503|ref|ZP_08419248.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcaceae bacterium D16] gi|332518649|gb|EGJ48252.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcaceae bacterium D16] Length = 445 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 109/339 (32%), Gaps = 67/339 (19%) Query: 45 NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104 + V+ASGL G GGAGF T +K + D L++N E EP D + H Sbjct: 134 DAVRASGLVGLGGAGFPTAVK---LAPKNLDEIDTLLINGAECEPYITSDNRCFIEDTHF 190 Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164 ++ G + I + ++AA+D I V Sbjct: 191 ILSGIKAVMKYLNIPKCIIGIEANKPEAIAKMKAAIDVAG----------------IEVK 234 Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 Y G E L+E+ G++ P P++VG+ V NV S A V L G Sbjct: 235 ELPCRYPQGAEKVLIENCTGREV---PFPGLPSDVGV-----IVMNVTSTAFVGKYLETG 286 Query: 225 ASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283 TK ++ G V P VE + EL + G L Sbjct: 287 MPLT----------TKRLTVDGDIVKEPKNVEVIIGTPIQELFDFCGGLTEEPGKVLYGG 336 Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343 G+ V L ++ AV+ + + Sbjct: 337 PMMGTCVASLDQPILKN----------------NNAVLAFSKKFAHMPKATNCIH----- 375 Query: 344 SCGQCT-PCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 CG+C C G +++ KG +++ L + Sbjct: 376 -CGRCVNACPLGLA-AKDIVKAYEKG-----DVEQLQAL 407 >gi|163816427|ref|ZP_02207791.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759] gi|158448127|gb|EDP25122.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759] Length = 441 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 109/328 (33%), Gaps = 60/328 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 NV + R+ + +K +G+ G GGAGF +K S + D Y++VN E EP Sbjct: 112 ANVKDLSSLYREDVKEIIKEAGIVGMGGAGFPANVKLSPKNEDAID---YIIVNGAECEP 168 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D M EP LI G I I + L V + Sbjct: 169 YLTSDYRRMLEEPDKLILGLEICINLFDHAKGIIAIEDNKPEAIAILSDKVKD------- 221 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 + I VH Y G E L+ + G+ ++ PA+ G V+ Sbjct: 222 --------NDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVH 265 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV++I + + G YS ++ +I+G + PC + ELIE Sbjct: 266 NVDTIVSIYEAVVEGRPLYS----------RIVTITGDAIENPCNLMVRTGTNCQELIEA 315 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 GG +P + G M L + ++ + D Sbjct: 316 A----------------GGFKDGVVPEKVISGGPMMGKALFSLDVPATKGVSALLCMTHD 359 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356 + + + +C +C C + Sbjct: 360 EVAEL-------EPSNCIRCGRCVDVCP 380 >gi|323187054|gb|EFZ72370.1| electron transport complex protein rnfC [Escherichia coli RN587/1] Length = 773 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|160895200|ref|ZP_02075972.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50] gi|156863079|gb|EDO56510.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50] Length = 443 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 109/328 (33%), Gaps = 60/328 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 +NV + R+ I + +K +G+ G GGAGF + +K S D Y++VN E EP Sbjct: 114 ENVRDLSTLYREDIKDMIKEAGIVGMGGAGFPSHVKLS---PKNEDDIEYIIVNGAECEP 170 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D M E LI G I I + S L Sbjct: 171 YLTSDYRRMLEETEKLILGLQICVNLFDKAKGIIAIEDNKPEAI---------AKISEHL 221 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 N K I V Y G E L+ + G+ ++ PA+ G V+ Sbjct: 222 ADNDK------IEVKVLKTKYPQGAERQLIYATTGRYVNSKM---LPADAG-----CIVH 267 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 N ++I + + G Y T++ +++G + PC + + E+IE Sbjct: 268 NTDTIVSIYEAVIEGKPLY----------TRIVTVTGDAIVNPCNLLVHNGTSCREIIEA 317 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 GG LP + G M + + L AV + Sbjct: 318 A----------------GGFKDGKLPEKIIAGGPM----MGKAMFSLDVPAVKGLSALLC 357 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356 + ++ +C +C C + Sbjct: 358 M---THDEVQDWEPSACIRCGRCVDVCP 382 >gi|306813407|ref|ZP_07447597.1| electron transport complex protein RnfC [Escherichia coli NC101] gi|305853152|gb|EFM53592.1| electron transport complex protein RnfC [Escherichia coli NC101] Length = 740 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|187777028|ref|ZP_02993501.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC 15579] gi|187773956|gb|EDU37758.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC 15579] Length = 447 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 109/322 (33%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E ++ I+ ++ +G+ G GGA F T +K S P D ++VNA E EP D Sbjct: 126 EMTKEEIMKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 182 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M E ++EG I +I + E+++ A Sbjct: 183 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASQGIA------------ 230 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ +++G++ Q PA+ G V N ++ Sbjct: 231 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 279 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G V P + + EL+E CGG + Sbjct: 280 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + VI GG + G T A V+ ++ Sbjct: 329 DP---VKVISGGPMMGMTIPT--LDIPTVKGS---SGLLSLTGAQAVLPQA--------- 371 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 SC +C C E Sbjct: 372 -------SSCIRCGRCVEACPM 386 >gi|220932271|ref|YP_002509179.1| electron transport complex, RnfABCDGE type, C subunit [Halothermothrix orenii H 168] gi|219993581|gb|ACL70184.1| electron transport complex, RnfABCDGE type, C subunit [Halothermothrix orenii H 168] Length = 441 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 69/370 (18%), Positives = 126/370 (34%), Gaps = 66/370 (17%) Query: 20 LSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 L +S+ RG ++ + I N ++ +G+ G GGA F T +K + D Sbjct: 107 LDESIKPRGELSDL------TPEDIKNIIREAGIVGLGGATFPTHVKLNVPEGKEIDH-- 158 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 +++N E EP D IM ++ G A G I + ++++ Sbjct: 159 -VILNGAECEPYLTVDHRIMVERSEDVVFGLRALMKAAGVENGLIGIEDNKPDAIQAMKK 217 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 V+ + I V Y G E L+++L ++ P + Sbjct: 218 VVEN---------------EPGIEVKVLETKYPQGGEKMLIKALLDREVPV---GGLPLD 259 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257 VG+ VNNV + V +++G + +I+G V P + Sbjct: 260 VGV-----IVNNVSTAVAVTDAIKKGMPLI----------ERPVTITGRGVKNPLNLVFR 304 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL-------PAGQMRGAIMDYDGLKE 310 + ++LIE+ G + G ++ G S P +G + + + Sbjct: 305 VGTPIEDLIEQAGGMVSPGGKVIVGGPMMGISQPHTGIPSNKGTSGLLILPPEEIEDFNP 364 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-----------SCGQCTPCREGTGWMM 359 V S ++ +LS F KHE +C +C C Sbjct: 365 RPCIKCARCV----DSCPMMLMPIQLSNFAKHEMYDELEKYNVLNCIECGTCSYVCPARR 420 Query: 360 RVMERLVKGI 369 ++E + G Sbjct: 421 PLVEYIRLGK 430 >gi|241865242|gb|ACS68699.1| NADH dehydrogenase [Sonneratia alba] gi|241865475|gb|ACS68770.1| NADH dehydrogenase [Sonneratia alba] Length = 107 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 70/103 (67%), Positives = 82/103 (79%) Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 LLAVIPGGSSVP LP + +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS F Sbjct: 5 LLAVIPGGSSVPLLPKHKCDNVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYF 64 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 YKHESCGQCTPCREGTGW+ +ME+L G A+ EID+L EV+ Sbjct: 65 YKHESCGQCTPCREGTGWLWMIMEKLKVGNAKLEEIDMLQEVT 107 >gi|225026272|ref|ZP_03715464.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353] gi|224956380|gb|EEG37589.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353] Length = 442 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 64/368 (17%), Positives = 121/368 (32%), Gaps = 76/368 (20%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 +I+ + SG+ G GGAGF T +K + + Y+++N E EP D+ +M E Sbjct: 5 LIDIIAKSGIVGAGGAGFPTHVKMNAKAE-------YVIINGAECEPLLRVDQQLMAVET 57 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 +++ + A+GA I ++G + S LLG I Sbjct: 58 KKILDALKLCMEAVGADKGVIALKGHYEAAINSFNQ---------LLGEYEG------IS 102 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 +H Y G+E + + G + P + P G+ V+NVE++ + Sbjct: 103 LHLLPNFYPAGDEQITVYEVTG-RIVP--EGGIPLQCGV-----IVSNVETMLNIYNAYF 154 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 + + +G V T++ + +T E ++ G G Sbjct: 155 EDKPVTDSY----------VTFAGEVKNHITLKLPLGMTVKEALDLAGGVTVNGP---YV 201 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI---IKAIWRLSVF 339 VI GG + + + T +IV+ + +K + Sbjct: 202 VINGGPMMG---KHVALDSKITKT----------TKGLIVLPEDHPLIQDVKLPIPKMLH 248 Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGI----------AQKREIDLLYEVSKNIEGRT 389 +C C+ C E + R+ + ++ + + Sbjct: 249 MAKAACCHCSMCSEVCPR-HLIGHRIEPNKTIRFASYGSLCDGSDTPMIAFLC------S 301 Query: 390 ICALGDAA 397 C L A Sbjct: 302 ECRLCQYA 309 >gi|254302139|ref|ZP_04969497.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322331|gb|EDK87581.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 435 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 137/384 (35%), Gaps = 71/384 (18%) Query: 29 WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI E + +++ ++ G+ G GGA F T +K + P D L++N Sbjct: 106 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P +++EG I + ++ + E+++ A + Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVSDVYVGIEDNKPEAIETMRKATEGT-- 220 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 DI + Y G E L++S+ ++ P+ VG+ Sbjct: 221 --------------DIKIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + + G K+ ++SG + P V+ ++ F Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNVKVAIGTPFSY 308 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ HCG + + ++ GG + A A + GT+ ++ + Sbjct: 309 IL-DHCG---VNREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 YK ++C C+ C + + +RL + ++ + Sbjct: 353 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEEM--AVHNLM 401 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 402 DCIECGS-CAYICPANRPLAEAIK 424 >gi|168186752|ref|ZP_02621387.1| electron transport complex protein RnfC [Clostridium botulinum C str. Eklund] gi|169295307|gb|EDS77440.1| electron transport complex protein RnfC [Clostridium botulinum C str. Eklund] Length = 439 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 115/326 (35%), Gaps = 62/326 (19%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 ++ II VK +G+ G GGA F T +K + P D ++VN E EP Sbjct: 114 KDYKTMSKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIIVNGAECEPYLT 170 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D +M E + ++EG + +I + E+L+ A + Sbjct: 171 CDHRLMLEETNMIVEGLKVILHIHPQAKGYIGIEDNKKNAIEALKEATKDI--------- 221 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 +I V Y G E L+ S+ K+ P K PA+ G V N+ Sbjct: 222 ------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----CIVQNIN 267 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271 ++ V + G +++ +I+G + P + + +++ EL+E G Sbjct: 268 TVREVYNAVVNG----------RPTISRVVTITGEAIKNPKNLRVRLGMSYRELVEACEG 317 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 + + VI GG + A + G++ ++ + ++ Sbjct: 318 ----FKEEAVKVISGGPMMGM--AISTLDVPV----------IKGSSGILCLTEKQAVLP 361 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGW 357 + SC +C C E Sbjct: 362 ---------EESSCIRCGRCVEACPM 378 >gi|323978231|gb|EGB73317.1| electron transporter [Escherichia coli TW10509] Length = 740 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|257066815|ref|YP_003153071.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii DSM 20548] gi|256798695|gb|ACV29350.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii DSM 20548] Length = 439 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 109/317 (34%), Gaps = 59/317 (18%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ ++K +G+ G GGA F +K+ + + ++VN E EP D +M++ Sbjct: 121 EEIVAKIKEAGIVGMGGAAFPAHIKY-----LPAKPVDTVIVNGAECEPYITCDDYLMKN 175 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 P +++ A A+GA I + + +++ +A+++ D Sbjct: 176 RPERILKALNQAMKAVGAKKGIIAIEDNKPKAFDTMVSALEKFAKEN---------SSFD 226 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + Y G+E +++ ++ P +VG V+NV ++ + Sbjct: 227 IEIKKLQTKYPQGDEKRIIDVCLNRQV---PSGGLPMDVG-----AIVSNVSTMNAI--- 275 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 Y + ++ +++G V P + F LIE+ G D+ Sbjct: 276 -------YEAIYMDKPLYERIVTVTGKSVKNPTNMLVRCGTEFGYLIEEAGGA-----DD 323 Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339 + ++ GG A + ++ + Sbjct: 324 IAKLVNGGPMCGI--AQPDLTRPTEKAS-------------------NCVLVLASDEAEP 362 Query: 340 YKHESCGQCTPCREGTG 356 + C +C C + Sbjct: 363 LEVSPCIRCGRCVDVCP 379 >gi|222033388|emb|CAP76129.1| electron transport complex protein rnfC [Escherichia coli LF82] gi|312946229|gb|ADR27056.1| electron transport complex protein RnfC [Escherichia coli O83:H1 str. NRG 857C] Length = 775 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|313672554|ref|YP_004050665.1| electron transport complex, rnfabcdge type, c subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939310|gb|ADR18502.1| electron transport complex, RnfABCDGE type, C subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 433 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 116/339 (34%), Gaps = 66/339 (19%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D + + A+G+ G GGA F + +K S KV L+VN E EP D +M Sbjct: 117 DKFQDIISAAGIVGLGGATFPSHVKLSPPKKVD-----TLIVNGAECEPFLTCDHRLMIE 171 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 ++ G ++ + + + + + + Y+ + Sbjct: 172 NTEEILLGALLVKEKLSIERLIVGIEDNKLDAYKEF--------------GKYQTKYNFE 217 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 + H Y G E L+ + G + P K P +VG+ V+NV + + Sbjct: 218 L--HLLHTKYPQGGEKQLIFATTG-RIVPEGK--LPLDVGV-----IVHNVGTFKAIYEA 267 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 G + ++ +++G V P + + +LI CGG G Sbjct: 268 WTFGKPLF----------ERVVTVTGAVKEPKNILVKIGTPISKLI-DFCGGFVGKP--- 313 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 +I GG + A + GT+ VIV+ D+ Sbjct: 314 KKIIIGGPMMGF--AASSLDTP----------TTKGTSGVIVLRE-DDMPDM-------- 352 Query: 341 KHESCGQCTPCREGTGWMM--RVMERLVKGIAQKREIDL 377 K +C +C C E + +ME+ ++ ID Sbjct: 353 KKSNCIRCGRCVEACPMGLVPAIMEQFSLNEMYEKLIDW 391 >gi|218705130|ref|YP_002412649.1| electron transport complex protein RnfC [Escherichia coli UMN026] gi|300901564|ref|ZP_07119633.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 198-1] gi|226735442|sp|B7NB83|RNFC_ECOLU RecName: Full=Electron transport complex protein rnfC gi|218432227|emb|CAR13117.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli UMN026] gi|300355031|gb|EFJ70901.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 198-1] Length = 740 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|253580107|ref|ZP_04857374.1| electron transport complex [Ruminococcus sp. 5_1_39B_FAA] gi|251848626|gb|EES76589.1| electron transport complex [Ruminococcus sp. 5_1_39BFAA] Length = 444 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 102/332 (30%), Gaps = 71/332 (21%) Query: 26 RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G DN+ D II+ ++ +G+ G GGAGF T + + +++N Sbjct: 126 HGDLDNL------TPDEIIDIIREAGIVGMGGAGFPT-----CVKLKPAKPVDTILLNGC 174 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D ++ +I G GA I + E +Q V + Sbjct: 175 ECEPLLTADHRVLLEYADDIIFGLKAVLKTTGAEKGIIVIEDNKPDAIELMQKKVADIG- 233 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 ++ V Y G E L++ + G + P PA+VG+ Sbjct: 234 --------------NMEVFVARTKYPQGAEKTLIKRVMG-RIVP--SGGLPADVGV---- 272 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265 V+N+ ++ + ++ G + P + + EL Sbjct: 273 -VVDNISTVKAISDAIQTGMPLVERVAT---------VTGEKIKNPGNFVIKIGTSVREL 322 Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325 I +CGG + GG + M G+ +I ++ Sbjct: 323 I-DYCGGFTDDDVLVKM---GGPMMGF--PLNTLDVPM----------MKGSNGIIAVEP 366 Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 K + C +C C + Sbjct: 367 DE------------TKEQPCIKCGRCVDVCPM 386 >gi|215486806|ref|YP_002329237.1| electron transport complex protein RnfC [Escherichia coli O127:H6 str. E2348/69] gi|312966607|ref|ZP_07780827.1| electron transport complex protein rnfC [Escherichia coli 2362-75] gi|254807929|sp|B7URX0|RNFC_ECO27 RecName: Full=Electron transport complex protein rnfC gi|215264878|emb|CAS09264.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O127:H6 str. E2348/69] gi|312288717|gb|EFR16617.1| electron transport complex protein rnfC [Escherichia coli 2362-75] Length = 741 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|26247876|ref|NP_753916.1| electron transport complex protein RnfC [Escherichia coli CFT073] gi|81748475|sp|Q8FH95|RNFC_ECOL6 RecName: Full=Electron transport complex protein rnfC gi|26108279|gb|AAN80481.1|AE016761_56 Electron transport complex protein rnfC [Escherichia coli CFT073] gi|307553652|gb|ADN46427.1| electron transport complex protein RnfC [Escherichia coli ABU 83972] Length = 742 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|189460039|ref|ZP_03008824.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136] gi|189433200|gb|EDV02185.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136] Length = 445 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 68/397 (17%), Positives = 130/397 (32%), Gaps = 72/397 (18%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++G +S+ R + K + I+ ++K +G+ G GGA F T +K + P + Sbjct: 99 VEGDEWEESIDRS--SELVKECNLTPEEIVAKIKNAGVVGMGGACFPTHVKLTPPPGCKA 156 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D +++NA E EP D +M + ++ G I A +I + + Sbjct: 157 DC---VIINAVECEPYLTADHRLMLEKADEILVGVQILMKAAKVTKGYIGIENNKPDAIK 213 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + A+ G I + Y G E L++++ G+ Q P Sbjct: 214 LMTE-----KAAAYPG----------IEIVPLKVKYPQGGEKQLIDAVIGR--QVPAPPA 256 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 P NVG V NV + V ++ + ++ +++G + P Sbjct: 257 IPINVG-----AVVQNVGTAYAVYEAVQ----------KNKPLFERIVTVTGKSLKNPSN 301 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 M +LIE G VI GG + A + Sbjct: 302 FLTRMGTPMSQLIEAAGGLPEDTGK----VIGGGPMMG--KALANTEVPICK-------- 347 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G++ V++M+ + + C +C C + L+ + Sbjct: 348 --GSSGVLIMNDKEACR---------AEPQPCIRCAKCVSACPMGLEPF--LLATCSAHG 394 Query: 374 EIDLLYEVSKNIEGRTI-CALGDAAA---WPIQGLIK 406 + + + + I C P+ I+ Sbjct: 395 DWERVE---HEMIMSCIECGSCQFTCPSHRPMLDYIR 428 >gi|110641752|ref|YP_669482.1| electron transport complex protein RnfC [Escherichia coli 536] gi|191173436|ref|ZP_03034964.1| electron transport complex protein RnfC [Escherichia coli F11] gi|123049190|sp|Q0THJ8|RNFC_ECOL5 RecName: Full=Electron transport complex protein rnfC gi|110343344|gb|ABG69581.1| electron transport complex protein RnfC [Escherichia coli 536] gi|190906278|gb|EDV65889.1| electron transport complex protein RnfC [Escherichia coli F11] Length = 774 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|118442918|ref|YP_877660.1| rnfC/nqrF [Clostridium novyi NT] gi|118133374|gb|ABK60418.1| rnfC/nqrF [Clostridium novyi NT] Length = 439 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 117/326 (35%), Gaps = 62/326 (19%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 ++ II VK +G+ G GGA F T +K + P D ++VN E EP Sbjct: 114 KDYKTMSKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKKID---AIIVNGAECEPYLT 170 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D +M E + ++EG I +I V E+L+ A + Sbjct: 171 CDHRLMLEETNMIVEGLKIILQIHPQAKGYIGVEDNKKNAIEALKQATKDI--------- 221 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 +I V Y G E L+ S+ K+ P K PA+ G V N+ Sbjct: 222 ------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----CIVQNIN 267 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271 ++ V + G +++ +++G + P + + +++ EL++ G Sbjct: 268 TVREVYNAVVNG----------RPTISRVVTVTGEAIKNPKNLRVRLGMSYKELVDACEG 317 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 + + VI GG + M L E+ G++ ++ + ++ Sbjct: 318 ----FKEEAVKVISGGPMMG-----------MAVSTL-EVPVIKGSSGILCLTEKQAVLP 361 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGW 357 + SC +C C E Sbjct: 362 ---------EESSCIRCGRCVEACPM 378 >gi|239617294|ref|YP_002940616.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga olearia TBF 19.5.1] gi|239506125|gb|ACR79612.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 111/338 (32%), Gaps = 67/338 (19%) Query: 27 GHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 W+ ++ E RD II +K +G+ G GGA F T +K + D L++N Sbjct: 106 DDWELLEPAKSYEEFSRDEIIERIKEAGIVGLGGATFPTHVKLNPPKDKKID---VLIIN 162 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 E EP D +M +I G A+G A I + + ++ A Sbjct: 163 GAECEPYLTVDYRLMLEMSEKIIRGIRALMKALGVEKAIIGIEDNKPKAIRRMKEA---- 218 Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 + G I V Y G E L+ +L K+ P P +VG+ Sbjct: 219 ---------AGDG----IEVRVLKTKYPQGAEKQLIYALT-KRIVP--SGGLPMDVGV-- 260 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITF 262 V NV + V + G + +++G V P + + Sbjct: 261 ---VVQNVGTAFAVYEAIELG----------KPLIERAVTVTGEGVKKPINIVARIGTLA 307 Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322 ELIE G + G +VP + + GT+ + V Sbjct: 308 SELIELAGGMEANVDRVVFGGPMMGIAVPKI------DIPV----------MKGTSGITV 351 Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 M + + + F C +C C + ++ Sbjct: 352 MTK-----EVVGERESF----PCIRCGGCVKACPMYLQ 380 >gi|289577375|ref|YP_003476002.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter italicus Ab9] gi|297543662|ref|YP_003675964.1| RnfABCDGE type electron transport complex subunit C [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527088|gb|ADD01440.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter italicus Ab9] gi|296841437|gb|ADH59953.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 444 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 59/320 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + II ++ +G+ G GGAGF T +K S D ++VN E EP D Sbjct: 121 DLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKID---TILVNGAECEPYLTTDHR 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M P ++ G A+G I V +L+ A Sbjct: 178 LMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREA---------------SK 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + +I + Y G+E L+ ++ ++ P P +VG+ V N + Sbjct: 223 NEKNIRIATLKVKYPQGDEKRLINAIL-RRIVP--SGGLPMDVGV-----IVVNAATTKA 274 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V + G Y RG + P + + +LIE+ G G Sbjct: 275 VADAILEGKPLYERVTTITGRG---------IKEPKNLLVKIGTPLKDLIEQCGGFTEGS 325 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 +I GG + A + GT ++++ + Sbjct: 326 PGK---IISGGPMMGI--AQHSLDVPI----------IKGTGGILILTKEE--------- 361 Query: 337 SVFYKHESCGQCTPCREGTG 356 + + C +C C E Sbjct: 362 ARPQQVLPCIKCGKCVEVCP 381 >gi|294673543|ref|YP_003574159.1| RnfABCDGE type electron transport complex subunit C [Prevotella ruminicola 23] gi|294474365|gb|ADE83754.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella ruminicola 23] Length = 456 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 120/372 (32%), Gaps = 48/372 (12%) Query: 15 LQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 ++G +S+ R + V E + I+ V+ +G+ G GGA F T +K + P Sbjct: 101 VEGDEWEESIDRSDKLELVAAHPELTPEEIVKRVQNAGVVGMGGACFPTFIKLTPPPTAK 160 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 ++ +++NA E EP D +M ++ G + +I + Sbjct: 161 AEC---VIINAVECEPYITADYRLMMEHADEILVGLELLMMGAKVTKGYIGIETNKP--- 214 Query: 134 ESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 AA++ A N K G + V Y G E L++++ + Q Sbjct: 215 ----AAIELLTAK----CNEKFNGTQYQVEVVPLKLRYPQGGEKQLVDAVINR--QVPAP 264 Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252 P P NVG V NV + V + + + + G KL P Sbjct: 265 PAIPVNVG-----AIVQNVGTAFAVYEAVMKNKPLFERYTT--VTGKKL-------QNPG 310 Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM----------RGAI 302 M +LI+ G G L G ++ + Sbjct: 311 NFLVRMGTPMKDLIDACGGMPEGDNKLLAGGPMMGKALTSVEVPICKGTNSVTIISDDEA 370 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-----SCGQCTPCREGTGW 357 D + V M ++ + + + + E SC +C C+ Sbjct: 371 RRKDAQPCIRCAKCVG-VCPMGLEPYLLAKLSEVKNWERAESEDITSCIECGSCQYTCPA 429 Query: 358 MMRVMERLVKGI 369 +++ + G Sbjct: 430 YRPLLDNIRLGK 441 >gi|284921553|emb|CBG34625.1| electron transport complex protein [Escherichia coli 042] Length = 741 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + ++C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|91210842|ref|YP_540828.1| electron transport complex protein RnfC [Escherichia coli UTI89] gi|218558500|ref|YP_002391413.1| electron transport complex protein RnfC [Escherichia coli S88] gi|218689576|ref|YP_002397788.1| electron transport complex protein RnfC [Escherichia coli ED1a] gi|123387945|sp|Q1RBG7|RNFC_ECOUT RecName: Full=Electron transport complex protein rnfC gi|226735437|sp|B7M9Y3|RNFC_ECO45 RecName: Full=Electron transport complex protein rnfC gi|254807931|sp|B7MVA7|RNFC_ECO81 RecName: Full=Electron transport complex protein rnfC gi|91072416|gb|ABE07297.1| electron transport complex protein RnfC [Escherichia coli UTI89] gi|218365269|emb|CAR02990.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli S88] gi|218427140|emb|CAR08023.2| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli ED1a] gi|294490842|gb|ADE89598.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli IHE3034] gi|307626885|gb|ADN71189.1| electron transport complex protein RnfC [Escherichia coli UM146] Length = 708 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323968397|gb|EGB63803.1| electron transporter [Escherichia coli M863] Length = 740 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + ++C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|312143455|ref|YP_003994901.1| electron transport complex, RnfABCDGE type, C subunit [Halanaerobium sp. 'sapolanicus'] gi|311904106|gb|ADQ14547.1| electron transport complex, RnfABCDGE type, C subunit [Halanaerobium sp. 'sapolanicus'] Length = 443 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 117/339 (34%), Gaps = 64/339 (18%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 D I N V+ +G+ G GGA F T +K S Y+++N E EP D + Sbjct: 122 LSPDEIRNIVREAGIVGLGGAMFPTHVKLSV---PEDKNVEYVILNGAECEPYLTVDHRV 178 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M P+ ++ G A+ A I + + ES+Q AV + Sbjct: 179 MVERPNAIVFGLKALMKAVNAEKGLIGIEDNKMEAVESMQDAVAD--------------- 223 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 + +I + Y G E L+E+L + P P V VNN + A V Sbjct: 224 EDNIEIKIVETKYPQGGEKMLIEALLD-REVPVGGLPLDIEV-------VVNNTSTAAAV 275 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 +R G + SI+G + PC + + +L+E+ G Sbjct: 276 ADAIREGKPLID----------RSISITGRGIESPCNLIYRIGTKLSDLVEQAGG----L 321 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 ++ + VI GG + A + + GT+ ++V + Sbjct: 322 KEDAVKVIAGGPMMGA--AQKNLDVP----------AVKGTSGLLVF---------VADE 360 Query: 337 SVFYKHESCGQCTPCREGTGW--MMRVMERLVKGIAQKR 373 + + C C C + M + R K ++ Sbjct: 361 VEEFDPDPCINCAKCVDHCPMYLMPTTLVRYAKNNMVEK 399 >gi|320195473|gb|EFW70098.1| Electron transport complex protein RnfC [Escherichia coli WV_060327] Length = 740 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVNELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|309793394|ref|ZP_07687821.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 145-7] gi|308122981|gb|EFO60243.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 145-7] Length = 772 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + E DI + Y G L L GK+ Sbjct: 223 MLRAVLAESN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|193070267|ref|ZP_03051211.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E110019] gi|192956448|gb|EDV86907.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E110019] Length = 740 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331663101|ref|ZP_08364011.1| electron transport complex protein RnfC [Escherichia coli TA143] gi|331058900|gb|EGI30877.1| electron transport complex protein RnfC [Escherichia coli TA143] Length = 640 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|157161091|ref|YP_001458409.1| electron transport complex protein RnfC [Escherichia coli HS] gi|166991047|sp|A8A0H2|RNFC_ECOHS RecName: Full=Electron transport complex protein rnfC gi|157066771|gb|ABV06026.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli HS] Length = 740 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|157157957|ref|YP_001462918.1| electron transport complex protein RnfC [Escherichia coli E24377A] gi|166991046|sp|A7ZM89|RNFC_ECO24 RecName: Full=Electron transport complex protein rnfC gi|157079987|gb|ABV19695.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E24377A] Length = 740 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|188495694|ref|ZP_03002964.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 53638] gi|188490893|gb|EDU65996.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 53638] Length = 740 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|191165932|ref|ZP_03027769.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B7A] gi|193064894|ref|ZP_03045970.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E22] gi|260843935|ref|YP_003221713.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli O103:H2 str. 12009] gi|260855454|ref|YP_003229345.1| fused putative 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O26:H11 str. 11368] gi|260868121|ref|YP_003234523.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli O111:H- str. 11128] gi|301303141|ref|ZP_07209267.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 124-1] gi|190904063|gb|EDV63775.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B7A] gi|192927381|gb|EDV81999.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E22] gi|257754103|dbj|BAI25605.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O26:H11 str. 11368] gi|257759082|dbj|BAI30579.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O103:H2 str. 12009] gi|257764477|dbj|BAI35972.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O111:H- str. 11128] gi|300841550|gb|EFK69310.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 124-1] gi|315257571|gb|EFU37539.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 85-1] gi|320197812|gb|EFW72420.1| Electron transport complex protein RnfC [Escherichia coli EC4100B] gi|323163522|gb|EFZ49348.1| electron transport complex protein rnfC [Escherichia coli E128010] gi|323180943|gb|EFZ66481.1| electron transport complex protein rnfC [Escherichia coli 1180] Length = 740 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|330911436|gb|EGH39946.1| electron transport complex protein RnfC [Escherichia coli AA86] Length = 709 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L VI GG + Sbjct: 310 VWARLGTPVRHLFNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|327252745|gb|EGE64399.1| electron transport complex protein rnfC [Escherichia coli STEC_7v] Length = 633 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 3 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 56 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 116 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + ++C +C+ C + + + + KG Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 298 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332 >gi|323186099|gb|EFZ71455.1| electron transport complex protein rnfC [Escherichia coli 1357] Length = 708 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVRRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|301647804|ref|ZP_07247591.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 146-1] gi|301074064|gb|EFK88870.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 146-1] Length = 665 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 3 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 56 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 116 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 298 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332 >gi|74312044|ref|YP_310463.1| electron transport complex protein RnfC [Shigella sonnei Ss046] gi|123759605|sp|Q3Z1Y4|RNFC_SHISS RecName: Full=Electron transport complex protein rnfC gi|73855521|gb|AAZ88228.1| putative membrane protein [Shigella sonnei Ss046] Length = 740 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|194436648|ref|ZP_03068749.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 101-1] gi|254161691|ref|YP_003044799.1| electron transport complex protein RnfC [Escherichia coli B str. REL606] gi|194424680|gb|EDX40666.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 101-1] gi|253973592|gb|ACT39263.1| electron transport complex protein RnfC [Escherichia coli B str. REL606] gi|253977787|gb|ACT43457.1| electron transport complex protein RnfC [Escherichia coli BL21(DE3)] gi|313848649|emb|CAQ32106.2| member of SoxR-reducing complex [Escherichia coli BL21(DE3)] Length = 740 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|170020019|ref|YP_001724973.1| electron transport complex protein RnfC [Escherichia coli ATCC 8739] gi|312969650|ref|ZP_07783833.1| electron transport complex protein rnfC [Escherichia coli 1827-70] gi|189043391|sp|B1IQC5|RNFC_ECOLC RecName: Full=Electron transport complex protein rnfC gi|169754947|gb|ACA77646.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli ATCC 8739] gi|310337935|gb|EFQ03024.1| electron transport complex protein rnfC [Escherichia coli 1827-70] Length = 740 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|16129587|ref|NP_416146.1| electron transport complex protein required for the reduction of SoxR; predicted membrane-associated NADH oxidoreductase [Escherichia coli str. K-12 substr. MG1655] gi|89108471|ref|AP_002251.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli str. K-12 substr. W3110] gi|170081293|ref|YP_001730613.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|238900845|ref|YP_002926641.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli BW2952] gi|17368316|sp|P77611|RNFC_ECOLI RecName: Full=Electron transport complex protein rnfC gi|226735441|sp|B1XFU1|RNFC_ECODH RecName: Full=Electron transport complex protein rnfC gi|259494049|sp|C4ZY92|RNFC_ECOBW RecName: Full=Electron transport complex protein rnfC gi|1742688|dbj|BAA15384.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli str. K12 substr. W3110] gi|1787916|gb|AAC74701.1| electron transport complex protein required for the reduction of SoxR; predicted membrane-associated NADH oxidoreductase [Escherichia coli str. K-12 substr. MG1655] gi|169889128|gb|ACB02835.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|238861218|gb|ACR63216.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli BW2952] gi|260449247|gb|ACX39669.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli DH1] gi|309701855|emb|CBJ01167.1| electron transport complex protein [Escherichia coli ETEC H10407] gi|315136270|dbj|BAJ43429.1| electron transport complex protein RnfC [Escherichia coli DH1] Length = 740 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|210630496|ref|ZP_03296483.1| hypothetical protein COLSTE_00368 [Collinsella stercoris DSM 13279] gi|210160448|gb|EEA91419.1| hypothetical protein COLSTE_00368 [Collinsella stercoris DSM 13279] Length = 418 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 72/364 (19%), Positives = 119/364 (32%), Gaps = 65/364 (17%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + + ++ I+ V+ SG+ G GGA F T W M +LVVN E EP Sbjct: 115 LKAPEYRTKEEFISCVRDSGMVGLGGASFPT---WFKMRAPEGKSFEFLVVNGMECEPYI 171 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D M +I+G A A+ A I V LQ V E Sbjct: 172 TSDYRQMMEHSERVIDGVFRALEALEIPAAVIGVEDNKPEAILELQRVVKE--------- 222 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 G + I V Y G E L+++ G+ P +VG V NV Sbjct: 223 ---KGREDRIEVMSIPTKYPAGGEKVLIKATTGRDV---PAGGLPIDVG-----CLVVNV 271 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270 +I+ V R G K +++G + P + ++ ++IE Sbjct: 272 TTISRVEQYFRYGMPLTC----------KTVTVTGDCIAKPGNYRIPIGMSVRDVIEATG 321 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 G ++ +I GG + I A++V+ + + Sbjct: 322 GMVKEP----KKIIMGGPMMGRTITDIDCPII------------KANNAIVVLHDAAVLP 365 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGR 388 +C +C C + + G ++ ++ L E V +E Sbjct: 366 D----------ETACIRCGRCVRACPLSLSPFA--LDGASRSHDVVALDEFAVMNCMECG 413 Query: 389 TICA 392 + CA Sbjct: 414 S-CA 416 >gi|315060936|gb|ADT75263.1| electron transport complex protein RnfC [Escherichia coli W] gi|323378493|gb|ADX50761.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli KO11] Length = 740 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|167551572|ref|ZP_02345326.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323654|gb|EDZ11493.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 735 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|293405128|ref|ZP_06649120.1| electron transport complex protein RnfC [Escherichia coli FVEC1412] gi|291427336|gb|EFF00363.1| electron transport complex protein RnfC [Escherichia coli FVEC1412] Length = 633 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|218554197|ref|YP_002387110.1| electron transport complex protein RnfC [Escherichia coli IAI1] gi|218695192|ref|YP_002402859.1| electron transport complex protein RnfC [Escherichia coli 55989] gi|226735440|sp|B7M0I6|RNFC_ECO8A RecName: Full=Electron transport complex protein rnfC gi|254807930|sp|B7L5I2|RNFC_ECO55 RecName: Full=Electron transport complex protein rnfC gi|218351924|emb|CAU97649.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli 55989] gi|218360965|emb|CAQ98538.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli IAI1] gi|323152867|gb|EFZ39137.1| electron transport complex protein rnfC [Escherichia coli EPECa14] Length = 708 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|315286322|gb|EFU45758.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 110-3] Length = 644 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|257875824|ref|ZP_05655477.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC20] gi|257809990|gb|EEV38810.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC20] Length = 445 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 115/323 (35%), Gaps = 61/323 (18%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ +++ G+ G+GGA F T +K+S + + H L++N E EP D +M+ Sbjct: 125 ETILKKIRQGGIAGKGGATFPTHVKFSI---DENKKIHTLILNGSECEPFLRSDAFLMQK 181 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 E +I+G IA + I + + ++QAA D Sbjct: 182 EAKKIIQGAKIAQKLLADPKIIIGIEDDKPLAISAMQAA---------------SAEDDT 226 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I V Y G E L+E L ++ A++G+ + NV + + Sbjct: 227 IEVVTVPTVYPTGGEKQLVELLTDQEV---PLGGLTADIGI-----VLINVATSFAIAEA 278 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + + + +++G V +P V+ + ELI+ G + Sbjct: 279 VCY----------DKPLIERYTTVTGDVQHPRIVKNPLGTLAGELIDFAGGFQGAPSKLI 328 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 L G SV L ++ G+ ++V + TD Y Sbjct: 329 LGGPMMGKSVKTL----------------KVPVTKGSNGIVVFNEETD---------WLY 363 Query: 341 KHESCGQCTPCREGTGWMMRVME 363 C +C C E ++ ME Sbjct: 364 AENPCIRCNKCVEACPMLLMPME 386 >gi|323169187|gb|EFZ54863.1| electron transport complex protein rnfC [Shigella sonnei 53G] Length = 708 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|170682353|ref|YP_001743625.1| electron transport complex protein RnfC [Escherichia coli SMS-3-5] gi|226735444|sp|B1LEQ7|RNFC_ECOSM RecName: Full=Electron transport complex protein rnfC gi|170520071|gb|ACB18249.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli SMS-3-5] Length = 676 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + ++C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|194425849|ref|ZP_03058405.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B171] gi|194415904|gb|EDX32170.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B171] Length = 740 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|315618815|gb|EFU99398.1| electron transport complex protein rnfC [Escherichia coli 3431] Length = 740 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + PC Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPCN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323956694|gb|EGB52430.1| electron transporter [Escherichia coli H263] Length = 667 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|224584034|ref|YP_002637832.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254807932|sp|C0Q508|RNFC_SALPC RecName: Full=Electron transport complex protein rnfC gi|224468561|gb|ACN46391.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 704 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|118594443|ref|ZP_01551790.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Methylophilales bacterium HTCC2181] gi|118440221|gb|EAV46848.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Methylophilales bacterium HTCC2181] Length = 510 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 107/325 (32%), Gaps = 65/325 (20%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 KI R I ++ SG+ G GGA F T +K + ++ L+VNA E EP Sbjct: 121 WKKI---DRKETIKKISESGIVGLGGATFPTHLKLN-----NNNEVKTLIVNAAECEPYI 172 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +MR + LIEG +A +GA A I + E L + Sbjct: 173 TCDDMLMREKSAELIEGIRLALHLLGAQNAIIGIEDNKPEAIEKLALLIKN--------- 223 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 D +I + Y G+ L+ + G + K G+ + NV Sbjct: 224 ------DANISIKIVPTIYPSGDAKRLIYLITGIQI---AKGKRSTEYGM-----QMFNV 269 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 +I + + G T++ +I+G V P E +LI G Sbjct: 270 ATIIALYKFIHCGEPSI----------TRIITITGKVRTPNNYEVLFGTPLSDLIIDAGG 319 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 + I GG + L + + A V+D ++I+ Sbjct: 320 KASQNG----SFIMGGPMMGYK--------------LPSVNVPVTKAMNCVIDAEPEMIE 361 Query: 332 AIWRLSVFYKHESCGQCTPCREGTG 356 + C +C C E Sbjct: 362 NNNPVL------PCIRCAKCAEACP 380 >gi|224023701|ref|ZP_03642067.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM 18228] gi|224016923|gb|EEF74935.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM 18228] Length = 445 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 68/380 (17%), Positives = 124/380 (32%), Gaps = 70/380 (18%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + K + I+ ++K +G+ G GGA F T +K + P ++ +++NA E EP Sbjct: 114 LVKECNLTPEEIVAKIKNAGVVGMGGACFPTHVKLTPPPGCKAEC---VIINAVECEPYL 170 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +M + ++ G I A +I + + + A+ G Sbjct: 171 TADHRLMLEKADEILVGVSILMKAAKVTKGYIGIENNKPDAIKLMTE-----KAAAYPG- 224 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 I V Y G E L++++ G+ Q P P NVG V NV Sbjct: 225 ---------IEVVPLKVKYPQGGEKQLIDAVIGR--QVPAPPAIPINVG-----AVVQNV 268 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270 + V ++ + ++ ++G + P M +LIE Sbjct: 269 GTAYAVYEAVQ----------KNKPLFERVVIVTGKSLKNPSNFLTRMGTPMSQLIEAAG 318 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 G VI GG + A + G++ V+VM+ Sbjct: 319 GLPEDTGK----VIGGGPMMG--KALANIEVPVCK----------GSSGVLVMND----- 357 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390 K R + + C +C C + L+ + + + + + I Sbjct: 358 KEARR----AEPQPCIRCAKCVSACPMGLEPF--LLATCSAHGDWERVE---HEMIMSCI 408 Query: 391 -CALGDAA---AWPIQGLIK 406 C P+ I+ Sbjct: 409 ECGSCQFTCPSRRPMLDYIR 428 >gi|82777103|ref|YP_403452.1| electron transport complex protein RnfC [Shigella dysenteriae Sd197] gi|309788404|ref|ZP_07683008.1| electron transport complex protein rnfC [Shigella dysenteriae 1617] gi|123742129|sp|Q32FE4|RNFC_SHIDS RecName: Full=Electron transport complex protein rnfC gi|81241251|gb|ABB61961.1| putative membrane protein [Shigella dysenteriae Sd197] gi|308923786|gb|EFP69289.1| electron transport complex protein rnfC [Shigella dysenteriae 1617] Length = 772 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGL--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|237743730|ref|ZP_04574211.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1] gi|256028188|ref|ZP_05442022.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D11] gi|260495794|ref|ZP_05815915.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33] gi|289766120|ref|ZP_06525498.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11] gi|229432761|gb|EEO42973.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1] gi|260196641|gb|EEW94167.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33] gi|289717675|gb|EFD81687.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11] Length = 438 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 74/387 (19%), Positives = 136/387 (35%), Gaps = 77/387 (19%) Query: 29 WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI E + +++ ++ G+ G GGA F T +K + P D L++N Sbjct: 106 WAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P +++EG I + ++ + ES++ A + Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATE---- 218 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++S+ ++ P+ VG+ Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSVLNREV---PSGQLPSAVGV---- 259 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + + G K+ ++SG + P ++ ++ F Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKIVTVSGKAIKNPKNLKIAIGTPFSY 308 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ +CG R + L + GG + A A + GT+ ++ + Sbjct: 309 IL-DYCGVDREKMERL---VMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 YK +SC C+ C + + +RL + Y + Sbjct: 353 TEE---------MRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAE--YNLM 401 Query: 383 KNIEGRT---ICALGDAAAWPIQGLIK 406 IE + IC A P+ IK Sbjct: 402 DCIECGSCNYICP----ANRPLAEAIK 424 >gi|331647118|ref|ZP_08348212.1| electron transport complex protein RnfC [Escherichia coli M605] gi|331043901|gb|EGI16037.1| electron transport complex protein RnfC [Escherichia coli M605] Length = 677 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L VI GG + Sbjct: 310 VWARLGTPVRHLFNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|209918942|ref|YP_002293026.1| electron transport complex protein RnfC [Escherichia coli SE11] gi|226735443|sp|B6IB67|RNFC_ECOSE RecName: Full=Electron transport complex protein rnfC gi|209912201|dbj|BAG77275.1| putative transport protein [Escherichia coli SE11] Length = 740 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323169935|gb|EFZ55591.1| electron transport complex protein rnfC [Escherichia coli LT-68] Length = 684 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 86 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREILIGIEDNKPQAIS 198 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 286 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 328 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415 >gi|207857039|ref|YP_002243690.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226735450|sp|B5QV02|RNFC_SALEP RecName: Full=Electron transport complex protein rnfC gi|206708842|emb|CAR33172.1| Electron transport complex protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 704 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 69/403 (17%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + P + ++ S Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF-PLPWLDVPVVKITNCLLAPS 364 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 A + +SC +C+ C + + + + KG Sbjct: 365 VTEMGAPQ-------------------EEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|198275774|ref|ZP_03208305.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135] gi|198271403|gb|EDY95673.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135] Length = 445 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 113/330 (34%), Gaps = 61/330 (18%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + K + I+ ++K +G+ G GGA F T +K + P ++ +++NA E EP Sbjct: 114 LVKECNLTPEEIVAKIKNAGIVGMGGACFPTHVKLTPPPGCKAEC---VIINAVECEPYL 170 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +M + ++ G I + A+I + + + A+ G Sbjct: 171 TADHRLMLEKADEILVGVQILMKGAKVNKAYIGIENNKPDAIKLMTE-----KAAAYPG- 224 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 I + Y G E L++++ G+ Q P P NVG V NV Sbjct: 225 ---------IEIVPLKVKYPQGGEKQLIDAVIGR--QVPAPPAIPINVG-----AVVQNV 268 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270 + V ++ + ++ +++G + P M +LIE Sbjct: 269 GTAYAVYEAVQ----------KNKPLFERVVTVTGKSLKNPSNFLTRMGTPMSQLIEAAG 318 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 G VI GG + A + G++ V++M+ Sbjct: 319 GLPEDTGK----VIGGGPMMG--KALVNTEVPICK----------GSSGVLIMND----- 357 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 K R + + C +C C + Sbjct: 358 KEARR----AEPQPCIRCAKCVSVCPMGLE 383 >gi|332343347|gb|AEE56681.1| electron transport complex RnfC [Escherichia coli UMNK88] Length = 708 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|253773413|ref|YP_003036244.1| electron transport complex protein RnfC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253324457|gb|ACT29059.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 708 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|15831592|ref|NP_310365.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. Sakai] gi|168763667|ref|ZP_02788674.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4501] gi|217328656|ref|ZP_03444737.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14588] gi|13361805|dbj|BAB35761.1| putative membrane protein [Escherichia coli O157:H7 str. Sakai] gi|189366209|gb|EDU84625.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4501] gi|217318003|gb|EEC26430.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14588] gi|320188315|gb|EFW62977.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC1212] gi|326341995|gb|EGD65776.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. 1044] Length = 772 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 70/433 (16%), Positives = 132/433 (30%), Gaps = 99/433 (22%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL----------------- 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEA 456 Query: 412 ---IEERIDQYHR 421 E R+ + R Sbjct: 457 KARFEARLARLER 469 >gi|293414946|ref|ZP_06657589.1| electron transport complex protein RnfC [Escherichia coli B185] gi|291432594|gb|EFF05573.1| electron transport complex protein RnfC [Escherichia coli B185] Length = 611 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|198244954|ref|YP_002215678.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226735449|sp|B5FIE7|RNFC_SALDC RecName: Full=Electron transport complex protein rnfC gi|197939470|gb|ACH76803.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623424|gb|EGE29769.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 704 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|227885955|ref|ZP_04003760.1| electron transport complex protein RnfC [Escherichia coli 83972] gi|227837047|gb|EEJ47513.1| electron transport complex protein RnfC [Escherichia coli 83972] Length = 616 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|305666618|ref|YP_003862905.1| electron transport complex protein [Maribacter sp. HTCC2170] gi|88708889|gb|EAR01124.1| electron transport complex protein [Maribacter sp. HTCC2170] Length = 442 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 65/351 (18%), Positives = 116/351 (33%), Gaps = 68/351 (19%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + K + + I+N V G+ G GGA F + +K D L++N E EP Sbjct: 115 LKKEITLSQKDILNHVTEYGIVGLGGATFPSHVKLDIKNDRKVDC---LIINGVECEPYL 171 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +M + +I G I A+ A I + E L+ A Sbjct: 172 TADHRLMLEKAEEIIVGIRILMHALHIEKAVIGIENNKKDAIEVLKEASRSANG------ 225 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 I V Y G E L+ ++ K+ P K P +VG+ V+NV Sbjct: 226 ---------IKVAALRVKYPQGSEKQLIRAIL-KREVP--KGGLPMDVGV-----IVHNV 268 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHC 270 +I + ++ ++ +++G ++ P + +L+ + Sbjct: 269 GTIYAIYQAVQH----------NQPLTERVVTVTGKKLDDPSNFWVKIGTPIKDLVAEVG 318 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 G D ++ GG + A + + GT+ ++V+ Sbjct: 319 G----VPDGTRKIVNGGPMMG--KAMKNTDVPITK----------GTSGILVISEEEASR 362 Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR---VMERLVKG---IAQKREI 375 K C +C+ C + +M KG A K +I Sbjct: 363 KEAKN---------CIRCSQCVFVCPMGLEPHLLMNLSEKGLYERASKEDI 404 >gi|322677330|gb|EFY73394.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] Length = 735 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|168750557|ref|ZP_02775579.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4113] gi|168757455|ref|ZP_02782462.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4401] gi|168771171|ref|ZP_02796178.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4486] gi|168775859|ref|ZP_02800866.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4196] gi|168783452|ref|ZP_02808459.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4076] gi|168789466|ref|ZP_02814473.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC869] gi|168800889|ref|ZP_02825896.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC508] gi|195939018|ref|ZP_03084400.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4024] gi|208810265|ref|ZP_03252141.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4206] gi|208821817|ref|ZP_03262137.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4042] gi|209399637|ref|YP_002270699.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4115] gi|254793246|ref|YP_003078083.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14359] gi|261227926|ref|ZP_05942207.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. FRIK2000] gi|226735438|sp|B5Z463|RNFC_ECO5E RecName: Full=Electron transport complex protein rnfC gi|187768715|gb|EDU32559.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4196] gi|188015238|gb|EDU53360.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4113] gi|188999240|gb|EDU68226.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4076] gi|189355522|gb|EDU73941.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4401] gi|189359999|gb|EDU78418.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4486] gi|189370921|gb|EDU89337.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC869] gi|189376869|gb|EDU95285.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC508] gi|208724781|gb|EDZ74488.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4206] gi|208741940|gb|EDZ89622.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4042] gi|209161037|gb|ACI38470.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4115] gi|254592646|gb|ACT72007.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. TW14359] gi|326343546|gb|EGD67308.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. 1125] Length = 772 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|317484378|ref|ZP_07943297.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Bilophila wadsworthia 3_1_6] gi|316924386|gb|EFV45553.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Bilophila wadsworthia 3_1_6] Length = 445 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 102/325 (31%), Gaps = 54/325 (16%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + I VKA+G+ G GGAGF +K++ ++ N E EP D+ Sbjct: 1 MDKQAFIAAVKAAGIVGEGGAGFPAHVKYAADAD-------TVIANGCECEPLLHTDQHH 53 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M H + ++ A GA I ++ ++ + L A+ Sbjct: 54 MLHHANEIVRAFSELMQATGAKRGVIALKKKYKEATKILTDAIGNR-------------- 99 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 I + Y G+E L+ + G+ P P VG V NV ++ V Sbjct: 100 --PIELALLPNFYPAGDEQTLVREVTGRSVPP---LGLPLMVG-----AVVANVGTLVSV 149 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 L K +++G V P V + +E G Sbjct: 150 AHALD-----------GKPVTHKFLTVTGEVKKPGIVCVPIGTPLSACLEAAGGPTVSDP 198 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 + GG M + + D + + +I++ R + + Sbjct: 199 ----VFVLGGP--------MMGRMVDNADAFAKEVVTKTSGGLIILPRGHYLHRNATTPL 246 Query: 338 VFYKHESCGQCTPCREGTGWMMRVM 362 F + + C CR + R + Sbjct: 247 NFMRRRAASACIQCRSCSELCPRHL 271 >gi|15802043|ref|NP_288065.1| electron transport complex protein RnfC [Escherichia coli O157:H7 EDL933] gi|17368144|sp|P58324|RNFC_ECO57 RecName: Full=Electron transport complex protein rnfC gi|12515618|gb|AAG56618.1|AE005386_9 putative membrane protein [Escherichia coli O157:H7 str. EDL933] Length = 740 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 70/433 (16%), Positives = 132/433 (30%), Gaps = 99/433 (22%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL----------------- 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEA 456 Query: 412 ---IEERIDQYHR 421 E R+ + R Sbjct: 457 KARFEARLARLER 469 >gi|298380776|ref|ZP_06990375.1| electron transport complex protein RnfC [Escherichia coli FVEC1302] gi|298278218|gb|EFI19732.1| electron transport complex protein RnfC [Escherichia coli FVEC1302] Length = 588 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|291282761|ref|YP_003499579.1| Electron transport complex protein RnfC [Escherichia coli O55:H7 str. CB9615] gi|290762634|gb|ADD56595.1| Electron transport complex protein RnfC [Escherichia coli O55:H7 str. CB9615] gi|320647300|gb|EFX16108.1| electron transport complex protein RnfC [Escherichia coli O157:H- str. 493-89] gi|320652594|gb|EFX20863.1| electron transport complex protein RnfC [Escherichia coli O157:H- str. H 2687] gi|320668653|gb|EFX35458.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. LSU-61] Length = 772 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331673198|ref|ZP_08373966.1| electron transport complex protein RnfC [Escherichia coli TA280] gi|331069396|gb|EGI40783.1| electron transport complex protein RnfC [Escherichia coli TA280] Length = 608 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300819310|ref|ZP_07099509.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 107-1] gi|300528081|gb|EFK49143.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 107-1] Length = 676 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331657598|ref|ZP_08358560.1| electron transport complex protein RnfC [Escherichia coli TA206] gi|331055846|gb|EGI27855.1| electron transport complex protein RnfC [Escherichia coli TA206] Length = 622 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|117623815|ref|YP_852728.1| electron transport complex protein RnfC [Escherichia coli APEC O1] gi|166225090|sp|A1ABH4|RNFC_ECOK1 RecName: Full=Electron transport complex protein rnfC gi|115512939|gb|ABJ01014.1| electron transport complex protein RnfC [Escherichia coli APEC O1] Length = 708 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAEFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|324119385|gb|EGC13272.1| electron transporter [Escherichia coli E1167] Length = 655 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323937424|gb|EGB33702.1| electron transporter [Escherichia coli E1520] Length = 631 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|315609146|ref|ZP_07884115.1| electron transport complex protein RnfC [Prevotella buccae ATCC 33574] gi|315249216|gb|EFU29236.1| electron transport complex protein RnfC [Prevotella buccae ATCC 33574] Length = 464 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 70/358 (19%), Positives = 116/358 (32%), Gaps = 63/358 (17%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q I N+ +G +S+ R + +D E + I+N VK +G+ G GGAGF T Sbjct: 93 RQPVIIINV---EGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPT 149 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 +K P ++ +++N E EP D +M ++ G + A + Sbjct: 150 FIKLCPPPTAKAEC---VILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGY 206 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182 I + L D + + A Y G E L++++ Sbjct: 207 IGIEENKPEAIRLLTELTAG---------------DPRVEIVPLAQKYPQGGEKQLVDAV 251 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 + Q P P NVG V NV + V + + + + + K Sbjct: 252 I--RRQVPAPPAIPVNVG-----AIVQNVGTAFAVYQAVMKRKPLFERYTTVTGKQMK-- 302 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 P M TF +LI+ G G L GG + A Sbjct: 303 -------QPGNFLVRMGTTFGQLIDLCGGLPEGDNKVLA----GGPMMG--KAVMSLDVP 349 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + GT ++ V+ S R V + C +C C + + Sbjct: 350 VCK----------GTNSITVLTESD-----ARRKPV----QPCIRCAKCVQVCPMGLE 388 >gi|323962199|gb|EGB57793.1| electron transporter [Escherichia coli H489] Length = 659 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|16764805|ref|NP_460420.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994288|ref|ZP_02575380.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|24638187|sp|Q8ZPM2|RNFC_SALTY RecName: Full=Electron transport complex protein rnfC gi|16419978|gb|AAL20379.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327844|gb|EDZ14608.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246661|emb|CBG24471.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993347|gb|ACY88232.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157990|emb|CBW17485.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912440|dbj|BAJ36414.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224076|gb|EFX49139.1| Electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129727|gb|ADX17157.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988342|gb|AEF07325.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 735 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTRILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300936047|ref|ZP_07150994.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 21-1] gi|300458773|gb|EFK22266.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 21-1] Length = 578 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQI---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|322680007|gb|EFY76046.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] Length = 673 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323242646|gb|EGA26667.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 673 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|225386798|ref|ZP_03756562.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme DSM 15981] gi|225047114|gb|EEG57360.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme DSM 15981] Length = 441 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 114/343 (33%), Gaps = 64/343 (18%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F TG K R +L+VN E EP DR +MRH +I + +GA Sbjct: 20 FPTGKKLDC-------RVEWLIVNGAECEPLLRTDRYLMRHNAERVIRAAGAVARMVGAK 72 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++ + +E ++L+AA+ + G I + Y G+E L+ Sbjct: 73 HCVIALKRAYTQEWKALEAALAG---------DGPEGGTALIELFPLDSFYPAGDEQVLV 123 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + + P P +VG C N S A+ L + Sbjct: 124 YEVTERVVPP---AGIPLDVGAVVCNLATMNAISDAMDGIPLTK---------------- 164 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K +++G V P V + F+E I G VI GG M Sbjct: 165 KYITVTGEVKCPSIVRAPVGTPFEECIRLAGG----SKKERYCVIDGGP---------MM 211 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR---LSVFYKHESCGQCTPCREGTG 356 G IMDY+ +E T+ +IV+D + +C QC+ C + Sbjct: 212 GKIMDYEAAREEAVTKTTSGLIVLDEDHYLNVLAKTPVGRMKNLASAACIQCSYCTQLCP 271 Query: 357 WM--------MRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 ++M R G +D + IC Sbjct: 272 RNLLGHPLEPHKIMRRFASGGDIPSLLDD-----PAVRQAAIC 309 >gi|293446004|ref|ZP_06662426.1| electron transport complex protein RnfC [Escherichia coli B088] gi|291322834|gb|EFE62262.1| electron transport complex protein RnfC [Escherichia coli B088] Length = 662 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|197303563|ref|ZP_03168602.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC 29176] gi|197297561|gb|EDY32122.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC 29176] Length = 439 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 117/356 (32%), Gaps = 59/356 (16%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + V + E R+ II+++ +G+ G GGAGF T +K S +D+ Y++ N E E Sbjct: 110 YAPVKPLNEMTREEIISKIGDAGIVGMGGAGFPTRVKLS---PKDADKIEYIIANCAECE 166 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D M L+ G + V + LQ AV E Sbjct: 167 PYITADYRRMLEYTEDLVSGMRVILSLFPNARGIFAVEDNKKDCIQKLQDAVSE------ 220 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 + + V Y G E L+ ++ G+ + PA+ G V Sbjct: 221 ---------EPKMDVKALMTKYPQGAERQLIYAVTGRAINASM---LPADAG-----CIV 263 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 +NVE++ + + G ++ ++SG V P + I+ ELIE Sbjct: 264 DNVETLIGIHNAVING----------KPLMERVVTVSGDAVAEPGNFLVPLGISHKELIE 313 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE-----MGSGLGTAAV-I 321 G + +I GG + L + TA + Sbjct: 314 AAGG----FTEEPEKLISGGPMMGFAMVTLDAPVTKTSSSLLAFKEDIVKKSPETACINC 369 Query: 322 VMDRSTDIIKAI-WRLSVFYKHE-----------SCGQCTPCREGTGWMMRVMERL 365 + I RL+ F K + C +C C ++ + + Sbjct: 370 ARCVDVCPSRIIPSRLADFAKRQDEASFVAWNGLECVECGSCSYVCPAKRQLKQSI 425 >gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016] gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 320 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380 I++ ++ + F E CG+C PCREG M+ + + +G A++R+I+ + + Sbjct: 154 IIIGDRNCMVDVVKDYLNFLSKEFCGKCIPCREGVKRMLEMATDICEGNAKERDIENMLQ 213 Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 +S I ++C LG A PI I+ FR EE + RC Sbjct: 214 MSYVISQASLCNLGKRAQNPIMIAIRYFRDEFEEHLKN-KRC 254 Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 1 MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWII 44 Q ++ N+ + ++ + +G ++ + ++ LE + II Sbjct: 111 FYKRQYKVALKNVDDIDPTTIDQYIEKGGYEALKEVLLEMKPEIII 156 >gi|301050123|ref|ZP_07197027.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 185-1] gi|300298145|gb|EFJ54530.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 185-1] Length = 579 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|204927691|ref|ZP_03218892.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323033|gb|EDZ08229.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 729 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|82544003|ref|YP_407950.1| electron transport complex protein RnfC [Shigella boydii Sb227] gi|123741996|sp|Q320Y6|RNFC_SHIBS RecName: Full=Electron transport complex protein rnfC gi|81245414|gb|ABB66122.1| putative membrane protein [Shigella boydii Sb227] gi|320186301|gb|EFW61037.1| Electron transport complex protein RnfC [Shigella flexneri CDC 796-83] Length = 740 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ R VI GG + Sbjct: 310 VWARLGTPVRHLLNDA----RFCPSADQMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|28210724|ref|NP_781668.1| rnfC/nqrF [Clostridium tetani E88] gi|28203162|gb|AAO35605.1| rnfC/nqrF [Clostridium tetani E88] Length = 449 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 65/348 (18%), Positives = 122/348 (35%), Gaps = 51/348 (14%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + + IIN VK +G+ G GGA F T +K + P + Y+VVNA E EP D Sbjct: 131 KLSNEEIINIVKEAGIVGMGGATFPTNVKLTPPPDKKIE---YIVVNAAECEPYLTCDHR 187 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M +I+G + I + ++++ A G Sbjct: 188 MMLEHSKEIIKGLKVILKLFPNAKGLIGIEDNKPNAIKAMKEA--------------ASG 233 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + I V Y G E L+ +L GK+ PA+ G V NV+++ Sbjct: 234 EE-RIEVKSVKTKYPQGAEKQLIYALIGKEV---PSGGLPADAG-----CIVQNVDTVYE 284 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G + S ++ +++G + P + + + EL+E G + Sbjct: 285 IYNAVVNGKALVS----------RVVTVTGDAIKEPKNIRFRIGTSVKELVEAAGGFLEE 334 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGA------------IMDYDGLKEMGSGLGTAAVIVM 323 + + G ++ L +G I D G + + ++ Sbjct: 335 PYKVISGGPMMGIAMYSLDVPAAKGTSGILCLTKKVAEIEDESNCINCGKCVQVCPMNLI 394 Query: 324 DRSTDIIKAIWRLSVF--YKHESCGQCTPCREGTGWMMRVMERLVKGI 369 + +I +F + C +C C +++R+ G Sbjct: 395 PTKLAVASSIRNYDMFNEFNGRDCIECGCCSFICPARRHLLQRIRSGK 442 >gi|332091211|gb|EGI96300.1| electron transport complex protein rnfC [Shigella boydii 5216-82] Length = 740 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323940294|gb|EGB36486.1| electron transporter [Escherichia coli E482] Length = 631 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLFWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331653024|ref|ZP_08354029.1| electron transport complex protein RnfC [Escherichia coli M718] gi|331049122|gb|EGI21194.1| electron transport complex protein RnfC [Escherichia coli M718] Length = 596 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|194431936|ref|ZP_03064226.1| electron transport complex, RnfABCDGE type, C subunit [Shigella dysenteriae 1012] gi|194419844|gb|EDX35923.1| electron transport complex, RnfABCDGE type, C subunit [Shigella dysenteriae 1012] Length = 740 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SLRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|168463131|ref|ZP_02697062.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633861|gb|EDX52213.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 735 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331668306|ref|ZP_08369154.1| electron transport complex protein RnfC [Escherichia coli TA271] gi|331063500|gb|EGI35411.1| electron transport complex protein RnfC [Escherichia coli TA271] Length = 620 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300821500|ref|ZP_07101647.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 119-7] gi|300526003|gb|EFK47072.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 119-7] Length = 640 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|332096012|gb|EGJ01017.1| electron transport complex protein rnfC [Shigella boydii 3594-74] Length = 716 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 86 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 198 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ R VI GG + Sbjct: 286 VWARLGTPVRHLLNDA----RFCPSADQMVIMGGPLMGF--TLPWLDVP----------- 328 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415 >gi|322665219|gb|EFY61407.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|323194067|gb|EFZ79266.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323202876|gb|EFZ87911.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 642 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|281412300|ref|YP_003346379.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga naphthophila RKU-10] gi|281373403|gb|ADA66965.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga naphthophila RKU-10] Length = 435 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 116/339 (34%), Gaps = 71/339 (20%) Query: 23 SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 + G ++ ++ ++ +K +G+ G GGA F T +K S P+ D L++ Sbjct: 108 YIETGDFER------MSKEEVLEVIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLII 158 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N E EP D +M +++G +I +G A + V I +L+ Sbjct: 159 NGAECEPVLTIDHRLMLERAEDILQGILIMMKVLGVQKAVVGVESNKIDAYHNLKKVFK- 217 Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 GY VD V Y G E L+ ++ G + PR P +VG+ Sbjct: 218 -------------GYPVD--VALLKTKYPQGAEKQLIYAITG-RVVPRGG--LPMDVGV- 258 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSIT 261 V NV + V + G + ++SG V P + + Sbjct: 259 ----VVQNVGTCVAVKEAVVDGKPLV----------ERGVTVSGDAVKNPRNLIVRIGTP 304 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 ++I +CGGI + VI GG + + + GT+ + Sbjct: 305 VRDVI-DYCGGIDENTER---VILGGPMMGI--SITNLDVPV----------MKGTSGIT 348 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + C +C+ C + ++ Sbjct: 349 AFLPK-----------KPQPQKPCIRCSECVQVCPMNLQ 376 >gi|256846561|ref|ZP_05552018.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2] gi|294784148|ref|ZP_06749449.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 3_1_27] gi|256718330|gb|EEU31886.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2] gi|294488218|gb|EFG35563.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 3_1_27] Length = 435 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 137/384 (35%), Gaps = 71/384 (18%) Query: 29 WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI E + +++ ++ G+ G GGA F T +K + P D L++N Sbjct: 106 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P +++EG I + ++ + ES++ A + Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATE---- 218 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++S+ ++ P+ VG+ Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + + G K+ ++SG + P ++ ++ F Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNLKVAIGTPFSY 308 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ HCG + + ++ GG + A A + GT+ ++ + Sbjct: 309 IL-DHCG---INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 YK +SC C+ C + + +RL + ++ + Sbjct: 353 NEE---------MRPYKTKSCISCSKCVSACPMGLAPLMFDRLAAAKEYEEM--AVHNLM 401 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 402 DCIECGS-CAYICPANRPLAESIK 424 >gi|208816704|ref|ZP_03257824.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4045] gi|208731047|gb|EDZ79736.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4045] Length = 708 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323973845|gb|EGB69018.1| electron transporter [Escherichia coli TA007] Length = 623 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|315297365|gb|EFU56645.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 16-3] Length = 580 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|307138283|ref|ZP_07497639.1| electron transport complex protein RnfC [Escherichia coli H736] gi|331642222|ref|ZP_08343357.1| electron transport complex protein RnfC [Escherichia coli H736] gi|331039020|gb|EGI11240.1| electron transport complex protein RnfC [Escherichia coli H736] Length = 621 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|218512403|ref|ZP_03509243.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3] Length = 119 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 56/109 (51%) Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 DY+ +G A ++V D + D++K F ESCG+CTPCR G+ + + Sbjct: 1 DYESFAARDGLIGHAGMVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETAD 60 Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++ +GI ++ +LL ++ ++ ++CALG +P+ + +F Sbjct: 61 KIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 109 >gi|324014761|gb|EGB83980.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 60-1] Length = 574 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|197265683|ref|ZP_03165757.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243938|gb|EDY26558.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 735 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTRILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300988844|ref|ZP_07178839.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 45-1] gi|300407382|gb|EFJ90920.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 45-1] Length = 570 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|225572996|ref|ZP_03781751.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM 10507] gi|225039647|gb|EEG49893.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM 10507] Length = 653 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 108/322 (33%), Gaps = 67/322 (20%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 D I++ V+ +G+ G GGAGF T +K + +++N E EP D Sbjct: 340 SLTPDEIVDIVREAGIVGMGGAGFPTSVKLK-----PAKPVDTILLNGCECEPLLTADHR 394 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 ++ +I G +GA I + E LQA + Sbjct: 395 VLLEFADDVIYGLKAIIKTVGAEKGLIVIEDNKPDAIELLQAKTADIS------------ 442 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 DI V Y G E L++ + G + PR PA+VG V+N+ + Sbjct: 443 ---DIDVVVAKTKYPQGAEKMLIKRVMG-RQVPRGG--LPADVG-----CVVSNISTTKA 491 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 + ++ G ++ +++G + P + ELI +CGG+ G Sbjct: 492 IADAIKTGMPLI----------ERVVTVTGERIKKPGNYIVKIGTNVKELI-DYCGGVIG 540 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 + GG + + G+ +I ++ TD + + Sbjct: 541 EDITIK---AGGPMMGF-------DLPN-----VNVPIMKGSNGIIAIE--TDHTETLE- 582 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 C +C C + Sbjct: 583 ---------CIKCGRCVDVCPM 595 >gi|168264620|ref|ZP_02686593.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200390674|ref|ZP_03217285.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603119|gb|EDZ01665.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205346950|gb|EDZ33581.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 735 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|293409940|ref|ZP_06653516.1| conserved hypothetical protein [Escherichia coli B354] gi|291470408|gb|EFF12892.1| conserved hypothetical protein [Escherichia coli B354] Length = 634 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R WD+ + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + ++C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|158320804|ref|YP_001513311.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus oremlandii OhILAs] gi|158141003|gb|ABW19315.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus oremlandii OhILAs] Length = 442 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 101/320 (31%), Gaps = 60/320 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + I+ +K +G+ G GGA F T +K S P D ++N E EP D Sbjct: 119 SLKPEEILAAIKDAGIVGMGGATFPTHVKLSVPPDKKVDN---FILNGAECEPFLTADHR 175 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M ++EG + + FI + +++ A ++ Sbjct: 176 LMLEHSDEIVEGLLAMMKVVNVQNGFIGIEDNKPDAIAAMKKAAEK-------------- 221 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 +I V Y G E L+ + K+ P PA+ G VNNV + A Sbjct: 222 -YPNIKVVGLHTKYPQGAEKQLIYACT-KREVP--SGGLPADAG-----AIVNNVATAAQ 272 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V LR G + P + + + E+IE+ G Sbjct: 273 VAKTLRTGMPLIDRITT---------VTGSAIANPKNLLMKIGVPIKEVIEQCGG----Y 319 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 +I GG + A ++ G + V+V D Sbjct: 320 SKTPGKIIMGGPMMGF--AQHSVDVVITK----------GGSGVLVFDE---------NE 358 Query: 337 SVFYKHESCGQCTPCREGTG 356 + + C +C C + Sbjct: 359 ARIPDPQQCIRCGKCVDICP 378 >gi|332097845|gb|EGJ02818.1| electron transport complex protein rnfC [Shigella dysenteriae 155-74] Length = 708 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SLRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|225175193|ref|ZP_03729189.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter alkaliphilus AHT 1] gi|225169369|gb|EEG78167.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter alkaliphilus AHT 1] Length = 440 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 113/349 (32%), Gaps = 66/349 (18%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 +F D W N+ G D + ++ +G+ G GGA F T +K S Sbjct: 97 VFIENDFQDTWH-EDVKPNDDWKNL------GVDDLKKIIREAGIVGMGGATFPTHVKVS 149 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 P D Y+++NA E EP D M P ++ G + A +I + Sbjct: 150 PPPDQKID---YVLINAAECEPYLTSDHRAMLERPEDVVIGLQTVMKVVNAPKGYIGIED 206 Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187 E+++ A + +I VH Y G E L+ G++ Sbjct: 207 NKPDAVEAMKKAAEGID---------------NIEVHALHTKYPQGAEKQLISVFTGREV 251 Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247 P+ VG V NV + + +R G G Sbjct: 252 ---PSGGLPSMVG-----CVVQNVGTCIAISEAIRLGKPLIERNVTITGSG--------- 294 Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307 +N P + + +E+IE+ G N+ +I GG + +G ++ Sbjct: 295 INEPKNMLVRVGTPMEEVIEQCGG----FKPNIRKMILGGPMMGLAQSGPENQPVI---- 346 Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 GT+ ++ + + + I C +C C E Sbjct: 347 -------KGTSGILCLTDAEVTLDEIR---------PCIKCAKCVEVCP 379 >gi|320181352|gb|EFW56271.1| Electron transport complex protein RnfC [Shigella boydii ATCC 9905] Length = 708 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|24113019|ref|NP_707529.1| electron transport complex protein RnfC [Shigella flexneri 2a str. 301] gi|30063144|ref|NP_837315.1| electron transport complex protein RnfC [Shigella flexneri 2a str. 2457T] gi|110805602|ref|YP_689122.1| electron transport complex protein RnfC [Shigella flexneri 5 str. 8401] gi|81724487|sp|Q83RB9|RNFC_SHIFL RecName: Full=Electron transport complex protein rnfC gi|122366544|sp|Q0T4E8|RNFC_SHIF8 RecName: Full=Electron transport complex protein rnfC gi|24051983|gb|AAN43236.1| putative membrane protein [Shigella flexneri 2a str. 301] gi|30041393|gb|AAP17122.1| putative membrane protein [Shigella flexneri 2a str. 2457T] gi|110615150|gb|ABF03817.1| putative membrane protein [Shigella flexneri 5 str. 8401] gi|281601063|gb|ADA74047.1| Electron transport complex protein rnfC [Shigella flexneri 2002017] gi|332757136|gb|EGJ87476.1| electron transport complex protein rnfC [Shigella flexneri 4343-70] gi|332758063|gb|EGJ88388.1| electron transport complex protein rnfC [Shigella flexneri 2747-71] gi|333003991|gb|EGK23526.1| electron transport complex protein rnfC [Shigella flexneri K-218] Length = 740 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300990137|ref|ZP_07179144.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 200-1] gi|300305772|gb|EFJ60292.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 200-1] Length = 571 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|197250222|ref|YP_002146588.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226735448|sp|B5F6J0|RNFC_SALA4 RecName: Full=Electron transport complex protein rnfC gi|197213925|gb|ACH51322.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 735 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|150390047|ref|YP_001320096.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus metalliredigens QYMF] gi|149949909|gb|ABR48437.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus metalliredigens QYMF] Length = 442 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 106/311 (34%), Gaps = 62/311 (19%) Query: 53 RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 G GGA F T +K S P D +++N E EP D IM P ++ G + Sbjct: 135 VGMGGATFPTHVKLSPPPGKKLD---TIILNGAECEPYLTADHRIMLESPDEIVYGLKVI 191 Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172 A+ A A+I + E+++ AV DI V Y Sbjct: 192 MKAVQAEKAYIGIENNKPDAIEAMKKAVANEK---------------DIEVVSLETKYPQ 236 Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232 G E L+ + + P +VG+ VNNV + A + ++ G Sbjct: 237 GAEKQLITACTQRVV---PSGGLPMDVGV-----LVNNVATAAQIAKTIKTGMPLI---- 284 Query: 233 RENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 ++ ++SG + P + + ++IE+ G + +I GG + Sbjct: 285 ------ERITTVSGKAIKTPKNLLIKVGTPMKDIIEQCGG----YSEKPGKIIMGGPMMG 334 Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 A Q + G++ V++ + F + +C +C C Sbjct: 335 M--AQQGVEVPLTK----------GSSGVLLFTEQQ---------AKFPERSNCIRCAKC 373 Query: 352 REGTGWMMRVM 362 ++ + Sbjct: 374 VSVCPVYLQPL 384 >gi|317471774|ref|ZP_07931113.1| electron transport complex [Anaerostipes sp. 3_2_56FAA] gi|316900751|gb|EFV22726.1| electron transport complex [Anaerostipes sp. 3_2_56FAA] Length = 438 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 108/322 (33%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + RD ++ +K +G+ G GGAGF T +K + D Y++VN E EP D Sbjct: 117 DMTRDEVLAAIKDAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 173 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 IM P L+EG I I V + V Sbjct: 174 IMMETPEVLVEGLNIVLDLFPKAKGIIAVEDNKKDAIAKVSDCVKG-------------- 219 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I V Y G E +L+ + G+ + PA+ G V+NV +I Sbjct: 220 -DARISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAG-----CIVDNVATIVA 270 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V ++ G + ++ +++G + P + ELIE G Sbjct: 271 VKDAVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIEAAGG---- 316 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 VI GG M G M + + + ++++ + D + A+ Sbjct: 317 FKGQPEKVISGGP---------MMGMAMFTTDVPAVKTF---SSLLAFTK--DPVSAV-- 360 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 + +C C C Sbjct: 361 -----EPSNCINCGRCVSVCPQ 377 >gi|187732180|ref|YP_001880384.1| electron transport complex protein RnfC [Shigella boydii CDC 3083-94] gi|226735456|sp|B2U2C8|RNFC_SHIB3 RecName: Full=Electron transport complex protein rnfC gi|187429172|gb|ACD08446.1| electron transport complex, RnfABCDGE type, C subunit [Shigella boydii CDC 3083-94] Length = 708 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 69/403 (17%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ L+EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQLVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ R VI GG + Sbjct: 310 VWARLGTPVRHLLNDA----RFCPSADQMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|168240973|ref|ZP_02665905.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448184|ref|YP_002045495.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226735452|sp|B4THD4|RNFC_SALHS RecName: Full=Electron transport complex protein rnfC gi|194406488|gb|ACF66707.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339389|gb|EDZ26153.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 735 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|168235530|ref|ZP_02660588.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734341|ref|YP_002114470.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226735455|sp|B4TV17|RNFC_SALSV RecName: Full=Electron transport complex protein rnfC gi|194709843|gb|ACF89064.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291094|gb|EDY30447.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 732 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323947999|gb|EGB43992.1| electron transporter [Escherichia coli H120] Length = 643 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|194443713|ref|YP_002040706.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226735453|sp|B4T594|RNFC_SALNS RecName: Full=Electron transport complex protein rnfC gi|194402376|gb|ACF62598.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 735 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|161614124|ref|YP_001588089.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189043393|sp|A9N025|RNFC_SALPB RecName: Full=Electron transport complex protein rnfC gi|161363488|gb|ABX67256.1| hypothetical protein SPAB_01863 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 735 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|288926954|ref|ZP_06420851.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella buccae D17] gi|288336274|gb|EFC74658.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella buccae D17] Length = 464 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 70/358 (19%), Positives = 116/358 (32%), Gaps = 63/358 (17%) Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62 Q I N+ +G +S+ R + +D E + I+N VK +G+ G GGAGF T Sbjct: 93 RQPVIIINV---EGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPT 149 Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122 +K P ++ +++N E EP D +M ++ G + A + Sbjct: 150 FIKLCPPPTAKAEC---VILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGY 206 Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182 I + L D + + A Y G E L++++ Sbjct: 207 IGIEENKPEAIRLLTELTAG---------------DPRVEIVPLAQKYPQGGEKQLVDAV 251 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242 + Q P P NVG V NV + V + + + + + K Sbjct: 252 I--RRQVPAPPAIPVNVG-----GIVQNVGTAFAVYQAVMKRKPLFERYTTVTGKQMK-- 302 Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 P M TF +LI+ G G L GG + A Sbjct: 303 -------QPGNFLVRMGTTFGQLIDLCGGLPEGDNKVLA----GGPMMG--KAVMSLDVP 349 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + GT ++ V+ S R V + C +C C + + Sbjct: 350 VCK----------GTNSITVLTESD-----ARRKPV----QPCIRCAKCVQVCPMGLE 388 >gi|320653114|gb|EFX21308.1| electron transport complex protein RnfC [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 677 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331677494|ref|ZP_08378169.1| electron transport complex protein RnfC [Escherichia coli H591] gi|331073954|gb|EGI45274.1| electron transport complex protein RnfC [Escherichia coli H591] Length = 544 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 33 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 85 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 86 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 145 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 146 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 187 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 188 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 232 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 233 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 275 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 276 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 328 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 329 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 362 >gi|257866189|ref|ZP_05645842.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC30] gi|257872520|ref|ZP_05652173.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC10] gi|257800123|gb|EEV29175.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC30] gi|257806684|gb|EEV35506.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC10] Length = 445 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 114/323 (35%), Gaps = 61/323 (18%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ +++ G+ G+GGA F T +K+S + + H L++N E EP D +M+ Sbjct: 125 ETILKKIRQGGIAGKGGATFPTHVKFSI---DENKKIHTLILNGSECEPFLRSDAFLMQK 181 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 E +I+G IA + I + + ++QAA D Sbjct: 182 EAKKIIQGAKIAQKLLADPKIIIGIEDDKPLAISAMQAA---------------SAEDDT 226 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I V Y G E L+E L ++ A++G+ + NV + + Sbjct: 227 IEVVTVPTVYPTGGEKQLVELLTDQEV---PLGGLTADIGI-----VLINVATSFAIAEA 278 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 + + + +++G V +P V+ + ELI+ G + Sbjct: 279 VCY----------DKPLIERYTTVTGDVQHPRIVKNPLGTLAGELIDFAGGFQGAPSKLI 328 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 L G SV L ++ G+ ++V + TD Y Sbjct: 329 LGGPMMGKSVKTL----------------KVPVTKGSNGIVVFNEETD---------WLY 363 Query: 341 KHESCGQCTPCREGTGWMMRVME 363 C +C C E + ME Sbjct: 364 AENPCIRCNKCVEACPMRLMPME 386 >gi|323952614|gb|EGB48486.1| electron transporter [Escherichia coli H252] Length = 651 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAEFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|205352830|ref|YP_002226631.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226735451|sp|B5RAK2|RNFC_SALG2 RecName: Full=Electron transport complex protein rnfC gi|205272611|emb|CAR37520.1| putative electron transport complex protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627901|gb|EGE34244.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 673 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|315291967|gb|EFU51319.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 153-1] Length = 569 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331683136|ref|ZP_08383737.1| electron transport complex protein RnfC [Escherichia coli H299] gi|331079351|gb|EGI50548.1| electron transport complex protein RnfC [Escherichia coli H299] Length = 624 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + ++C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|56413574|ref|YP_150649.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362498|ref|YP_002142135.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360680|sp|Q5PIB9|RNFC_SALPA RecName: Full=Electron transport complex protein rnfC gi|226735454|sp|B5BKB2|RNFC_SALPK RecName: Full=Electron transport complex protein rnfC gi|56127831|gb|AAV77337.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093975|emb|CAR59471.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 735 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G ++ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|331091237|ref|ZP_08340078.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404684|gb|EGG84223.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium 2_1_46FAA] Length = 444 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 69/357 (19%), Positives = 120/357 (33%), Gaps = 64/357 (17%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + V + E ++ II+ +K +G+ G GGAGF T +K S ++ Y++ N E E Sbjct: 116 YLPVKPLEEMTKEEIIDRIKEAGIVGMGGAGFPTHVKLS---PKEPEKIDYVIANCAECE 172 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D M P LI G + V E L+ ++ Sbjct: 173 PYITADYRRMLENPEELISGMRVVLSIFPQAKGIFGVEDNKPDCIEKLRKLTEK------ 226 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 + + V Y G E L+ + G+ + PA+ G V Sbjct: 227 ---------ESRMEVKALKTKYPQGAERQLIFATTGRAINSSM---LPADAG-----CVV 269 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 +NVE++ + T + G ++ ++SG V P + E+IE Sbjct: 270 DNVETMIAIHTAVVEG----------KAVTERIVTLSGDAVKEPGNFKVLFGTNHQEVIE 319 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 GG + + +I GG + A + +G Sbjct: 320 -AGGGFKNPPEK---IISGGPMMGF--AMFTTDTPITKTSSSILGFTK------------ 361 Query: 328 DIIKAIWRLSVFYKHESCGQCT---PCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 D +KA +CG+C P R + + ER ++++ L + Sbjct: 362 DEVKAN----EPTACINCGRCVEVCPSRIIPSRLADLAER--HDEEGFKKLEGLECI 412 >gi|332758459|gb|EGJ88780.1| electron transport complex protein rnfC [Shigella flexneri K-671] gi|332767030|gb|EGJ97229.1| electron transport complex, RnfABCDGE type, C subunit [Shigella flexneri 2930-71] Length = 684 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 86 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 198 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 286 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 328 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415 >gi|333005285|gb|EGK24805.1| electron transport complex protein rnfC [Shigella flexneri VA-6] Length = 708 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|320658803|gb|EFX26477.1| electron transport complex protein RnfC [Escherichia coli O55:H7 str. USDA 5905] Length = 631 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|46202219|ref|ZP_00053559.2| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Magnetospirillum magnetotacticum MS-1] Length = 498 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 62/339 (18%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVK----ASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 DS + W + NE+K +G+ G GGA F + +K + Sbjct: 102 DSDGKDEWAEPMAAIADPFAASANEIKTRVAEAGIVGLGGATFPSAVKLGL---GGQHKL 158 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 L++N E EP D +MR +++G I + A+GA I V + ESL+ Sbjct: 159 EILLLNGAECEPYLTCDDRVMREFAAQVVDGARIMAHALGAPKVIIAVEDNKPQAVESLK 218 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A + ++ V Y G E L +++ G++ R A Sbjct: 219 AEAAK---------------TPNVEVVGVPVQYPMGAERHLTQAVTGRETPARK---LTA 260 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 +VG+ V+NV + V +R G S + G V P +E Sbjct: 261 DVGV-----VVHNVATARAVHQAVRLGRPLVSRVVTVSGGG---------VAEPKNIEVP 306 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + EL+ CGGI VI GG M G + + GT Sbjct: 307 LGTKVSELL-DFCGGIS---KATKRVISGGP---------MMGQPLPSLDVA---VVKGT 350 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQC-TPCREGT 355 + ++ + +S + S CG C T C G Sbjct: 351 SGILALTQS----ETNEHASSPCIR--CGSCVTYCPCGL 383 >gi|313648904|gb|EFS13341.1| electron transport complex protein rnfC [Shigella flexneri 2a str. 2457T] Length = 676 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|307310800|ref|ZP_07590446.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli W] gi|306908978|gb|EFN39474.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli W] Length = 608 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|94498904|ref|ZP_01305442.1| electron transport complex protein RnfC [Oceanobacter sp. RED65] gi|94428536|gb|EAT13508.1| electron transport complex protein RnfC [Oceanobacter sp. RED65] Length = 727 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 112/332 (33%), Gaps = 60/332 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 +D LE RD +I+ ++ SG+ G GGA F T +K V +R L++NA E EP Sbjct: 118 KGLDNPLETDRDTLIDIIQQSGITGLGGASFPTHVK----TCVPEERIDTLILNAAECEP 173 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +MR L++G + I + E+LQ A+D Sbjct: 174 YITADDMLMRSYADGLVKGIELLFHLYQPEKCLIGIEDNKPEAIEALQKALDATTDD--- 230 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 I V Y G E L++ L GK+ PA++G+ Sbjct: 231 --------THKIHVVTIPTKYPSGGEKQLIQILTGKEVPANG---LPADIGV-----ACQ 274 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEK 268 NV + + Y ++ +++G N E + L+E+ Sbjct: 275 NVGTAYAI----------YEAIYLGKPLIKRITTVTGEAANNKANFETLLGTPVHHLLEQ 324 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 +D + +I GG + L T V V+ + Sbjct: 325 ----GETDFDKVHRLIMGGPMMGF---------------------TLQTDEVPVVKSTNC 359 Query: 329 IIKAIWR-LSVFYKHESCGQCTPCREGTGWMM 359 II + L + C +C C E + Sbjct: 360 IIASTANELPDPAMEQPCIRCGMCTEACPAQL 391 >gi|256022710|ref|ZP_05436575.1| electron transport complex protein RnfC [Escherichia sp. 4_1_40B] Length = 597 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|255524147|ref|ZP_05391107.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|296186604|ref|ZP_06855006.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|255512132|gb|EET88412.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|296048641|gb|EFG88073.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] Length = 441 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 110/334 (32%), Gaps = 67/334 (20%) Query: 24 MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83 + R W+ +DK ++N +K +G+ G GGA F T +K S P D ++N Sbjct: 112 VERNDWEKLDK------KELLNIIKEAGIVGMGGATFPTHVKLSPPPDKKVD---TFILN 162 Query: 84 ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143 A E EP D +M + ++ G I +G ++ + + + A + Sbjct: 163 AAECEPYLTADHRMMLEQSERIVNGVKITMKVLGIDKGYVGIEQNKPDAIDVMTKAFE-- 220 Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203 G + V Y G E L+ L K+ PA+VG+ Sbjct: 221 ----------GTG----VQVVGLPTKYPQGAEKMLIRVLVEKEV---PSGGLPADVGV-- 261 Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263 V NV ++A + + +G G + P + + F Sbjct: 262 ---VVQNVGTVAAISDAVLKGIPLIERVTTI---------SGGAIKEPKNLLVRVGTLFS 309 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 + IE +CGG + LL GG + A + G + ++ + Sbjct: 310 DAIE-YCGGFSETPEKLL---SGGPMMGM--AQSHIDLPI----------IKGVSGILAL 353 Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + +C C C E Sbjct: 354 SKKD---------VNSGRESACIHCGRCVEVCPM 378 >gi|300907218|ref|ZP_07124880.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 84-1] gi|300401022|gb|EFJ84560.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 84-1] Length = 573 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|16760456|ref|NP_456073.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25330737|pir||AE0692 probable NADH reducing dehydrogenase STY1665 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502752|emb|CAD01910.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi] Length = 673 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGD 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G ++ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323268765|gb|EGA52224.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 655 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|171463483|ref|YP_001797596.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193021|gb|ACB43982.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 110 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 M +++D L+ G + +AAV+V + F++HESCGQCTPCR GTG Sbjct: 1 MNDIPLNFDTLQPYGCFIDSAAVMVFSDKDKARDMALNVMHFFEHESCGQCTPCRVGTGK 60 Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 ++M + + L E++ + +IC G AA PI+ + K F + Sbjct: 61 AAQLM------QTKSWDRKTLEELATVMVDASICGRGQAAPNPIRCIHKYFPEEV 109 >gi|168229832|ref|ZP_02654890.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470158|ref|ZP_03076142.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456522|gb|EDX45361.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335440|gb|EDZ22204.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 735 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300921314|ref|ZP_07137681.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 115-1] gi|300411733|gb|EFJ95043.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 115-1] Length = 576 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|237741389|ref|ZP_04571870.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 4_1_13] gi|229430921|gb|EEO41133.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 4_1_13] Length = 435 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 137/384 (35%), Gaps = 71/384 (18%) Query: 29 WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI E + +++ ++ G+ G GGA F T +K + P D L++N Sbjct: 106 WTELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P +++EG I + ++ + ES++ A + Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATE---- 218 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++S+ ++ P+ VG+ Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + + G K+ ++SG + P ++ ++ F Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNLKVAIGTPFSY 308 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ HCG + + ++ GG + A A + GT+ ++ + Sbjct: 309 IL-DHCG---INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 YK +SC C+ C + + +RL + ++ + Sbjct: 353 NEE---------MRPYKTKSCISCSKCVSACPMGLAPLMFDRLAAAKEYEEM--AVHNLM 401 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 402 DCIECGS-CAYICPANRPLAESIK 424 >gi|168819208|ref|ZP_02831208.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343902|gb|EDZ30666.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 704 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---THSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323247769|gb|EGA31709.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 447 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|19704917|ref|NP_602412.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712812|gb|AAL93711.1| Nitrogen fixation iron-sulphur protein RNFC [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 441 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 71/384 (18%) Query: 29 WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI E + +++ ++ G+ G GGA F T +K + P D L++N Sbjct: 112 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTQLDS---LILNGA 168 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P +++EG I + ++ + ES++ A + Sbjct: 169 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPNVYVGIEDNKPEAIESMRKATE---- 224 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++S+ ++ P+ VG+ Sbjct: 225 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 265 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + + G K+ ++SG + P V+ ++ F Sbjct: 266 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNVKVAIGTPFSY 314 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 +++ + + ++ GG + A A + GT+ ++ + Sbjct: 315 ILDNCG----INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 358 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 YK ++C C+ C + + +RL + + + Sbjct: 359 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEEMAA--HNLM 407 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 408 DCIECGS-CAYICPANRPLAESIK 430 >gi|29141784|ref|NP_805126.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213051629|ref|ZP_03344507.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425981|ref|ZP_03358731.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649168|ref|ZP_03379221.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855037|ref|ZP_03383277.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|29137412|gb|AAO68975.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 673 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGD 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G ++ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|320086067|emb|CBY95841.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 642 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---THSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|333017993|gb|EGK37298.1| electron transport complex protein rnfC [Shigella flexneri K-304] Length = 601 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 3 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 56 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 116 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 298 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332 >gi|323217293|gb|EGA02013.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] Length = 579 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|161503451|ref|YP_001570563.1| electron transport complex protein RnfC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043392|sp|A9MRW8|RNFC_SALAR RecName: Full=Electron transport complex protein rnfC gi|160864798|gb|ABX21421.1| hypothetical protein SARI_01525 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 673 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGI 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I ++ + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAYILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 + + L+ VI GG + Sbjct: 310 IWARLGTPVRHLLNNAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSATEMGAPQEETSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|322641119|gb|EFY37762.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] Length = 644 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|164687861|ref|ZP_02211889.1| hypothetical protein CLOBAR_01505 [Clostridium bartlettii DSM 16795] gi|164603136|gb|EDQ96601.1| hypothetical protein CLOBAR_01505 [Clostridium bartlettii DSM 16795] Length = 452 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 77/405 (19%), Positives = 140/405 (34%), Gaps = 77/405 (19%) Query: 18 KSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76 + L +S+ G +++ II ++ +G+ G GGA F T +K S P D Sbjct: 104 EELDESVKPHGELESL------DPKEIIKIIQDAGIVGMGGATFPTHVKLSPPPDSNID- 156 Query: 77 PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136 +++N E EP D +M P ++ G A+ H +I + E++ Sbjct: 157 --VIILNGAECEPYLTADHRLMVEMPDDVVFGIRAVMRALDVHKGYIGIEVNKPDAIEAV 214 Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196 A + ++ V Y G E L+ + G + P P Sbjct: 215 TKAAEP---------------YPEVEVVGLEIKYPQGAEKQLIYACTGGREVP--SGALP 257 Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVE 255 A G V NV + A + ++ G ++ +I+G + P + Sbjct: 258 AAAG-----AVVTNVGTAAQIAKSIKTGLPLI----------ERITTITGDAIKDPKNLI 302 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + E+I CGG + G + VI GG + + + S Sbjct: 303 TKVGTPICEII-DQCGGFKEGVNVGK-VILGGPMMG------------NTQYTTQAASTK 348 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 GT+ ++ + R+ C +C C E ++ + + + K + Sbjct: 349 GTSGILCLSEEK------ARIPEPTA---CLRCGRCTEVCPAFLQPLY--ISANSLKGDF 397 Query: 376 DLLYEV--SKNIEGRT---ICALGDAAAWPIQGLIKNFRPLIEER 415 D E IE + IC A P+ I+N + I+ + Sbjct: 398 DRAEEHRALDCIECGSCSFICP----ARRPLVESIRNAKRQIQAK 438 >gi|323205623|gb|EFZ90586.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] Length = 590 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|322622924|gb|EFY19766.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] Length = 586 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|296329171|ref|ZP_06871672.1| electron transport complex protein RnfC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153527|gb|EFG94344.1| electron transport complex protein RnfC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 441 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 71/384 (18%) Query: 29 WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI E + +++ ++ G+ G GGA F T +K + P D L++N Sbjct: 112 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTQLDS---LILNGA 168 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P +++EG I + ++ + ES++ A + Sbjct: 169 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPNVYVGIEDNKPEAIESMRKATE---- 224 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++S+ ++ P+ VG+ Sbjct: 225 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 265 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + + G K+ ++SG + P V+ ++ F Sbjct: 266 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNVKVAIGTPFSY 314 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 +++ + + ++ GG + A A + GT+ ++ + Sbjct: 315 ILDNCG----INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 358 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 YK ++C C+ C + + +RL + + + Sbjct: 359 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEEMAA--HNLM 407 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 408 DCIECGS-CAYICPANRPLAESIK 430 >gi|322667964|gb|EFY64124.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 582 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|238911689|ref|ZP_04655526.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 644 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|291514609|emb|CBK63819.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes shahii WAL 8301] Length = 443 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 126/386 (32%), Gaps = 71/386 (18%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 +G ++ + R + K+ II ++K +G+ G GGA F T +K S P + Sbjct: 94 REGDDWAEGIDRSD--ALVKVCPFSAQEIIAKIKDAGIVGMGGATFPTHVKLSVPPGKKA 151 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +++N E EP D M L+ G I A+G A+I + Sbjct: 152 EC---VIINGVECEPYLTSDHRTMLEHGEELVVGVTILMKAVGVGKAYIGIENNKPDAIA 208 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L A+G G I V Y G E L+ ++ G++ P P Sbjct: 209 HLTK-----IAAGYKG----------IEVVPLKVMYPQGGEKQLIAAVTGRQVPPP--PA 251 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 P +VG V N + V + + ++ +++G V P Sbjct: 252 LPIDVG-----AVVCNASTTVAVYQAVL----------KNKPLIERVVTVTGKSVKEPKN 296 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 + M LIE G VI GG + A + + Sbjct: 297 LLTRMGTPISALIEAAGGLPGDAGK----VINGGPMMG--RAMVNLDSPVTK-------- 342 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQ 371 G + + VM + + C +C C + + ++ + Sbjct: 343 --GCSGITVMSGRDAQRREATQ---------CIKCAKCVSACPMGLEPYYLSKMTQKKGW 391 Query: 372 KREIDLLYEVSKNIEGRTICALGDAA 397 E++ L ++ IE C + Sbjct: 392 -DELEALM-ITSCIE----CGCCQST 411 >gi|256018178|ref|ZP_05432043.1| electron transport complex protein RnfC [Shigella sp. D9] gi|332279226|ref|ZP_08391639.1| electron transport complex protein rnfC [Shigella sp. D9] gi|332101578|gb|EGJ04924.1| electron transport complex protein rnfC [Shigella sp. D9] Length = 565 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|62180045|ref|YP_216462.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75483500|sp|Q57PI0|RNFC_SALCH RecName: Full=Electron transport complex protein rnfC gi|62127678|gb|AAX65381.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714515|gb|EFZ06086.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 704 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L K+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTEKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|322658697|gb|EFY54955.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] Length = 570 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 306 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67 + + + SL D + G + + + G +I EV SGL GRGGA F TG KW Sbjct: 204 LLGRIGVVYPASLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQ 263 Query: 68 FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEG 108 DRPHYLV NADESEPGT KDR IM +P+ +G Sbjct: 264 ATASRP-DRPHYLVCNADESEPGTFKDRVIMEGDPYAWRDG 303 >gi|294678805|ref|YP_003579420.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB 1003] gi|17380290|sp|Q52716|RNFC_RHOCA RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|435525|emb|CAA51399.1| rnfC [Rhodobacter capsulatus] gi|1905810|emb|CAA72670.1| RnfC protein [Rhodobacter capsulatus] gi|294477625|gb|ADE87013.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB 1003] gi|742355|prf||2009377B rnfC protein Length = 519 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 120/334 (35%), Gaps = 64/334 (19%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 + I +V A+G+ G GGA F + +K + K L++N E EP D +MR Sbjct: 135 PEEIAAQVAAAGIVGMGGATFPSAVKLNLRAKYD---LTTLIINGAECEPYLTCDDRLMR 191 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 + +G I + A+G F+ + + E++ N LGY Sbjct: 192 ERAEEIADGIGIMARALGVKQVFVAIESNKPQAIEAMTR------------YNRALGYTF 239 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y G E L++ + G++ R A++G+ V+N+ + V Sbjct: 240 KIHVV--PTQYPMGSEKHLVKMITGQETPARA---LTADLGV-----VVHNIATAHAVHL 289 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G + + ++SGH + P + + E+I HCGG D Sbjct: 290 AVRYGEPLIA----------RTVTVSGHGIRRPANLRVLIGTPVSEII-AHCGGFTEEPD 338 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 LL GG MG + V V+ + I+ + Sbjct: 339 RLLL---GGP---------------------MMGMPIQNPRVPVVKGTNGILALTAAETP 374 Query: 339 FYKHESCGQCTPCREGTGWMMRVME---RLVKGI 369 K C +C C +G + E R+ G Sbjct: 375 EAKTMPCIRCGRCVQGCPVGLTPFELNARIHAGD 408 >gi|291563596|emb|CBL42412.1| electron transport complex, RnfABCDGE type, C subunit [butyrate-producing bacterium SS3/4] Length = 442 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 63/381 (16%), Positives = 132/381 (34%), Gaps = 66/381 (17%) Query: 5 QDRIFTNLYGLQG---KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 + R+ N +Q ++ ++ + + + ++ I N VK +G+ G GGAGF Sbjct: 84 EPRLVANGAIVQSIIVENDNEYTAIEGFGEKRDYTKLSKEEIRNIVKEAGIVGLGGAGFP 143 Query: 62 TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121 T +K + D ++VNA E EP D +M +P LI G + Sbjct: 144 TNVKLAPKDDNAIDH---IIVNAAECEPYLTSDYRLMMEQPERLIGGIKVMLSMFPNAKG 200 Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181 I + + L+ V + + I V Y G E L+ + Sbjct: 201 VIGIEENKPEAIKLLEGLVKD---------------EPKISVCPLKTKYPQGGERFLIYA 245 Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 + G + PA+ G V+NV+++ + + K+ Sbjct: 246 VTGGREISSAM--LPADAG-----CIVDNVDTVISIYNAVCESTPLIR----------KI 288 Query: 242 FSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300 +++G V P + + + + E++E G + +I GG + A Sbjct: 289 ITVTGDAVKNPQNFQVPLGMCYREILEAAGG----FKEEPEKMISGGPMMG--QALFSLD 342 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 + ++A+ + + C +C C + Sbjct: 343 IPV----------MKNSSALTCFTKD----QVAAN-----PESPCIRCGRCIDVCP--EH 381 Query: 361 VMERLVKGIAQKREIDLLYEV 381 ++ +++ G A++ ++ L ++ Sbjct: 382 IVPQIMMGAAERNDLALFEKL 402 >gi|51246896|ref|YP_066780.1| electron transfer protein (PduS) [Desulfotalea psychrophila LSv54] gi|50877933|emb|CAG37773.1| probable electron transfer protein (PduS) [Desulfotalea psychrophila LSv54] Length = 447 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 107/325 (32%), Gaps = 54/325 (16%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 +D ++ + +G+ G GGAGF +K+ + ++ N E EP D+ I Sbjct: 3 MNKDSLLRSILDAGIVGEGGAGFPAHVKYDT-------QVDTVIANGCECEPLLHTDQHI 55 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 MR ++ GA I ++ ++ + ++ G Sbjct: 56 MRTRAADIVVAMQAIVSVTGATRGVIGIKSKYTEIAKIFADCIE------------GTG- 102 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 + + Y G+E AL+ + GK P P +VG V NV ++A V Sbjct: 103 ---LELAQLDNFYPAGDEQALVYEVTGKTIPP---LGLPKDVG-----AVVANVGTLAEV 151 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 + + K+ +++G V P + + E + HCGG Sbjct: 152 AAAI-----------KGTPLTHKIVTVTGDVGSPAVIRVPLGTKMSECL-AHCGGSTVAD 199 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 I GG M + + T +IV+ R + R Sbjct: 200 P---IYILGGP--------MMGRMVDSEEDFATKMVTKTTGGLIVLPRGHYLHVMASRDI 248 Query: 338 VFYKHESCGQCTPCREGTGWMMRVM 362 + ++ C CR T R + Sbjct: 249 HTMERQAASTCIQCRLCTDLCPRYL 273 >gi|323224588|gb|EGA08865.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323254810|gb|EGA38608.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 552 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323211028|gb|EFZ95887.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323237790|gb|EGA21849.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323266729|gb|EGA50216.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 595 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323198190|gb|EFZ83299.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] Length = 557 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|322620523|gb|EFY17385.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322685564|gb|EFY81560.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] Length = 569 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|322650862|gb|EFY47253.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 559 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300927478|ref|ZP_07143191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 182-1] gi|300416582|gb|EFJ99892.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 182-1] Length = 575 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSTNELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|291550297|emb|CBL26559.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus torques L2-14] Length = 439 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 70/358 (19%), Positives = 118/358 (32%), Gaps = 63/358 (17%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 ++ V + E R+ IIN++ +G+ G GGAGF T +K S D+ Y++ N E E Sbjct: 110 YEPVKPLEEMTREEIINKIGDAGIVGMGGAGFPTKVKLS---PKEPDKIEYIIANCAECE 166 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D M L+ G + V E LQ AV Sbjct: 167 PYITADYRRMLEYTEDLVSGMKVILSLFPNARGVFAVEDNKKDCIEKLQKAVAG------ 220 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 + I V Y G E L+ ++ + + PA+ G V Sbjct: 221 ---------EPRIDVKALMTKYPQGAERQLIYAVTKRAINSTM---LPADAG-----CIV 263 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 +NVE++ + + +G ++ ++SG V P I EL+E Sbjct: 264 DNVETLIGIHNAVIKG----------KPLMERVVTVSGDAVEKPGNFMAPFGINHRELVE 313 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG----LKEMGSGLGTAAVIVM 323 GG++ L I GG + A A + L + + + Sbjct: 314 -AAGGLKAEPQKL---ISGGPMMGF--AMVTMDAPVTKTSSSILLFKEDVVAKSLETACI 367 Query: 324 DRSTDI-----IKAIWRLSVFYKHE-----------SCGQCTPCREGTGWMMRVMERL 365 + + RL+ F K + C +C C ++ + + Sbjct: 368 NCGRCVEICPSRIIPSRLADFSKRKDEASFVAWNGLECVECGSCSYVCPAKRQLKQAI 425 >gi|261258339|ref|ZP_05950872.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. FRIK966] Length = 589 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|323232168|gb|EGA16274.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] Length = 561 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|301329557|ref|ZP_07222340.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 78-1] gi|300844326|gb|EFK72086.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 78-1] Length = 576 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSTNELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|291334209|gb|ADD93876.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S08-C1340] Length = 126 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 2/117 (1%) Query: 109 CVIASFAIGAHCAFIYVRGEFI-RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHG 166 +I+S+AIGA + Y+RGEFI + AV E Y +G N + +DI+ G Sbjct: 1 MLISSYAIGASVGYNYLRGEFIGDQWIVFNKAVKEAYKYNFIGKNILRSNLCIDIVPLIG 60 Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223 AGAYI GEETA+LES+EGK+G PR+KPPFPA GLYG PT +NN E++A VP I++ Sbjct: 61 AGAYIVGEETAMLESIEGKRGMPRIKPPFPAVQGLYGKPTIINNTETLATVPYIIKM 117 >gi|304316325|ref|YP_003851470.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777827|gb|ADL68386.1| electron transport complex, RnfABCDGE type, C subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 441 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 117/321 (36%), Gaps = 62/321 (19%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + I V+ +G+ G GGA F T +K + P D +++N E EP D + Sbjct: 122 LKPEEIRQIVRDAGIVGMGGAMFPTAVKLNPPPDKKIDI---VILNGAECEPYLTADHRL 178 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M +P ++ G + A+GA ++ + + ++ A E Sbjct: 179 MLEKPVDIVHGLLAIMKALGASKGYVGIEDNKQDAIKEIRKACKE--------------- 223 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 + V Y G E +++++ G + P K PA++G+ V+NV + + Sbjct: 224 YAGVEVAVLKTKYPQGSEKHIIKAITG-REIPSGK--LPADIGV-----VVDNVGTAFAI 275 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 ++ G ++ +++G + P + + F ELIE CGG +G Sbjct: 276 AEAIKFG----------KPLIERVVTVTGEGIMTPKNLRVKIGTPFRELIE-CCGGFKGI 324 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 VI GG + A + GT+ ++V+ +K Sbjct: 325 PGK---VISGGPMMGI--AQYSIDVPV----------IKGTSGILVLPEDRIALK----- 364 Query: 337 SVFYKHESCGQCTPCREGTGW 357 + C +C C + Sbjct: 365 ----DPKPCIKCARCVDACPM 381 >gi|322616074|gb|EFY12990.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322628769|gb|EFY25554.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631479|gb|EFY28237.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638814|gb|EFY35509.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322654536|gb|EFY50857.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322671624|gb|EFY67745.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|323221947|gb|EGA06338.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323234339|gb|EGA18426.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323260352|gb|EGA43970.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 562 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300950446|ref|ZP_07164365.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 116-1] gi|300450223|gb|EFK13843.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 116-1] Length = 496 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 33 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 85 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 86 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 145 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 146 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 187 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 188 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 232 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 233 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 275 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 276 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLFWFSKGQQH 328 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 329 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 362 >gi|167746962|ref|ZP_02419089.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662] gi|167653922|gb|EDR98051.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662] Length = 438 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 107/322 (33%), Gaps = 62/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + RD ++ +K +G+ G GGAGF T +K + Y++VN E EP D Sbjct: 117 DMTRDEVLAAIKDAGIVGLGGAGFPTHVK---LAPKDPGAIEYIIVNGAECEPYITGDYR 173 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 IM P L+EG I I V + V Sbjct: 174 IMMETPEVLVEGLNIVLDLFPKAKGIIAVEDNKKDAIAKVSDCVKG-------------- 219 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I V Y G E +L+ + G+ + PA+ G V+NV +I Sbjct: 220 -DARISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAG-----CIVDNVATIVA 270 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V ++ G + ++ +++G + P + ELIE G Sbjct: 271 VKDAVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIEAAGG---- 316 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 VI GG M G M + + + ++++ + D + A+ Sbjct: 317 FKGQPEKVISGGP---------MMGMAMFTTDVPAVKTF---SSLLAFTK--DPVSAV-- 360 Query: 336 LSVFYKHESCGQCTPCREGTGW 357 + +C C C Sbjct: 361 -----EPSNCINCGRCVSVCPQ 377 >gi|333018895|gb|EGK38188.1| electron transport complex protein rnfC [Shigella flexneri K-227] Length = 644 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|322646614|gb|EFY43122.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 565 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + ++ + + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|218548775|ref|YP_002382566.1| electron transport complex protein RnfC [Escherichia fergusonii ATCC 35469] gi|226735446|sp|B7LQP1|RNFC_ESCF3 RecName: Full=Electron transport complex protein rnfC gi|218356316|emb|CAQ88934.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia fergusonii ATCC 35469] Length = 726 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIERDGWLDYRN---HSREELIARIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|301029281|ref|ZP_07192385.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 196-1] gi|299877809|gb|EFI86020.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 196-1] Length = 520 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 54 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 106 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 107 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 166 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 167 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 208 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 209 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 253 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 254 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 296 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 297 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 349 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 350 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 383 >gi|300854322|ref|YP_003779306.1| putative electron transport complex protein RnfC [Clostridium ljungdahlii DSM 13528] gi|300434437|gb|ADK14204.1| predicted electron transport complex protein RnfC [Clostridium ljungdahlii DSM 13528] Length = 457 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 102/325 (31%), Gaps = 61/325 (18%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 E ++ ++ +G+ G GGA F +K + P D ++N E EP Sbjct: 114 RNWKELSVKEMLGIIREAGIVGMGGATFPVHVKLAPPPDKKVD---VFILNGAECEPYLT 170 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D M ++ G I + AF+ + + E+++ A + Sbjct: 171 ADYRSMLENSDKVVAGVQIIMKILNVEKAFVGIEDNKPKAIEAMKKAFEGTK-------- 222 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 + V Y G E L+ L G++ PA+VG V NV Sbjct: 223 --------VQVVGLPTKYPQGAEKMLINVLTGREV---PSGGLPADVGA-----VVQNVG 266 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 + + + RG G + P + + TF + I CGG Sbjct: 267 TCIAISDAVERGIPLIQRVTTI---------SGGAIKEPKNILVRIGTTFKDAI-DFCGG 316 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + + +I GG + A + G++ ++ + ++ Sbjct: 317 FKEEP---VKIISGGPMMGF--AQSNLDIPI----------MKGSSGILGLTKND----- 356 Query: 333 IWRLSVFYKHESCGQCTPCREGTGW 357 K SC +C C + Sbjct: 357 ----VNDGKESSCIRCGRCLKACPM 377 >gi|325264019|ref|ZP_08130752.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium sp. D5] gi|324031057|gb|EGB92339.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium sp. D5] Length = 439 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 59/336 (17%), Positives = 108/336 (32%), Gaps = 67/336 (19%) Query: 27 GHWDNVDK-----ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 G ++ ++ + E RD +I + +G+ G GGAGF T +K S ++ Y++ Sbjct: 103 GEYEEAERSPIRPLEEMTRDEVIGMIGEAGIVGMGGAGFPTKVKLS---PKEPEKIDYII 159 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 N E EP D M L+ G I + E L+ AV Sbjct: 160 ANCAECEPYITADYRRMLENTEELVSGMKIVLSLFENAKGIFGIEDNKKDCIEKLKEAVK 219 Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 + + + V Y G E L+ ++ + + PA+ G Sbjct: 220 D---------------EPRMEVKVLQTKYPQGAERQLIYAVTKRAINSSM---LPADAG- 260 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSI 260 V+NVE++ + + +G ++ ++SG V+ P + Sbjct: 261 ----CIVDNVETLIGIHHAVAKG----------RPLTERVVTVSGDAVSNPGNFLVLLGT 306 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 EL+E G + VI GG + A + +++ Sbjct: 307 NQQELVEAAGG----FKADPQKVISGGPMMGF--AMMTLDTPVTKTS----------SSI 350 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + + + +C C C E Sbjct: 351 LAFTED---------IVAKSQTTACINCGRCVEVCP 377 >gi|313157095|gb|EFR56525.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes sp. HGB5] Length = 447 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 70/371 (18%), Positives = 116/371 (31%), Gaps = 71/371 (19%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + + II +K +G+ G GGA F T +K S P ++ L++N E EP Sbjct: 112 ETLVRECALSSAEIIARIKDAGIVGMGGATFPTHVKLSVPPGRKAE---ALIINGVECEP 168 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D M L+ G I AI A+I + L+ A G Sbjct: 169 YLTSDHRTMLEHGEELLVGVTILMKAIAVEKAYIGIENNKPDAIAHLRK-----LAEGYK 223 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 G I V Y G E L+ ++ G++ P P P +VG V Sbjct: 224 G----------IEVVPLKVKYPQGGEKQLIAAVTGREVPPP--PALPIDVG-----AVVC 266 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 N + V ++ + ++ +++G V P + M L+E Sbjct: 267 NASTTYAVYQAVQ----------KNKPLIERVVTVTGKGVKEPKNLLTRMGTPISALLEA 316 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 G VI GG + A + + G + + VM Sbjct: 317 AGGLPADAGK----VINGGPMMG--RAMVNLDSPVTK----------GCSGITVMSGRDA 360 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIE 386 + + C +C C + + ++ + D L E + Sbjct: 361 VRREA---------SQCIKCAKCVAACPMGLEPYYLSKMTQKKGW----DALEE---QMI 404 Query: 387 GRTI-CALGDA 396 I C A Sbjct: 405 TSCIECGCCQA 415 >gi|306819984|ref|ZP_07453635.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552020|gb|EFM39960.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 448 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 98/326 (30%), Gaps = 60/326 (18%) Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94 I E ++ ++ VK GL G GGA F T +K + D +++N E EP D Sbjct: 117 IEELSKERLLEIVKDIGLVGMGGATFPTHVKLNPPKDKVVD---AVILNGAECEPYLTAD 173 Query: 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 +M E +++G + +I + E++ + Sbjct: 174 HRLMLEETKDVVDGLRAILKILSVENGYIGIEDNKPDCIEAVTK---------------E 218 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 +I V Y G E L+ G++ PA+ G V+NV + Sbjct: 219 ASKYPNIKVVTLKTKYPQGAEKQLINVCTGREV---PSGGLPADAG-----AVVDNVATA 270 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274 A + LR G G + P V + + ++I G Sbjct: 271 AQIAKSLRTGLPLIERI---------CTVTGGAIANPKNVMFKIGTLYSDIINMTGG--- 318 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 + +I GG + A + GT+ ++ I + Sbjct: 319 -FKEEPKKIISGGPMMGVALASV--DVP----------ANKGTSGILCFTEKEAHIDDMQ 365 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMR 360 C +C C + Sbjct: 366 N---------CIRCAKCVGVCPAFLE 382 >gi|170768759|ref|ZP_02903212.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia albertii TW07627] gi|170122307|gb|EDS91238.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia albertii TW07627] Length = 740 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIPRDGWVDYR---SRSREALIERIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + N+ + V + G ++ +++G + P Sbjct: 265 RSSDIGV-----LMQNIGTAYAVKRAVIDG----------EPITERVVTLTGEAITRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|333005861|gb|EGK25377.1| electron transport complex protein rnfC [Shigella flexneri K-272] Length = 620 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 86 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 198 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 286 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 328 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 381 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415 >gi|206575962|ref|YP_002238213.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella pneumoniae 342] gi|226735447|sp|B5XWP9|RNFC_KLEP3 RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|206565020|gb|ACI06796.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella pneumoniae 342] Length = 753 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 65/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG K + S Sbjct: 110 IDADGEDRWIERDGWSDYQ---LRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGS 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ +++G I + + I + + Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVDGIRILAHILQPDEVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + I + Y G L + L GK+ Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + + + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDGEPLT----------ERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + + Sbjct: 310 VWARLGTPVRHLLNDAGFCASAEP----MVIMGGPLMGF--------------------T 345 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 G +V + + + + + + C +C+ C + + + + KG Sbjct: 346 LPGLDVPVVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|300959104|ref|ZP_07171191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 175-1] gi|300314283|gb|EFJ64067.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 175-1] Length = 468 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 3 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 56 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 116 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLFWFSKGQQH 298 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332 >gi|300871307|ref|YP_003786180.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000] gi|300689008|gb|ADK31679.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000] Length = 378 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 55/348 (15%), Positives = 124/348 (35%), Gaps = 39/348 (11%) Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 ++ L++NA KD+ + + PH +++ ++ + + I +R + Sbjct: 61 SKNNDNQSLIINAYSFGYLVFKDKFFIDNNPHLILDSAILIAKILNIKNIDILIRSYY-- 118 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 + + ++ + L K+ +++I ++ E + +E R Sbjct: 119 ---NKETLINAIVEAEDL---YKIESEININIYDENNF----RENINIYFIE------RQ 162 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251 K ++E++ G +S +G EN++GT L S SG + Sbjct: 163 KYAL--------------DLETVIQFGYFAHMGLENFSKYGNENHKGTCLISFSGDIPNV 208 Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311 E +F+E+I+ G +++ V G + + YD + Sbjct: 209 NLHEFQFGSSFNEIIK--ASGYISYNNDIKCVFTNGFLNAPTTLESLSNKSLSYDEIN-- 264 Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 +G + + + +++ + ++ F K SC C PC G + +++ G + Sbjct: 265 ---IGNGGICFIAENRCMLRVVMKIIQFAKSISCTNCMPCNYGFNLCEYYLNKIILGKSN 321 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 + L + I + C A I IK F +++ Sbjct: 322 SNDYKNLVNAVEMIIKGSSCVYIYNIAKCIIETIKMFEYEFIYALEKK 369 >gi|300931505|ref|ZP_07146822.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 187-1] gi|300460699|gb|EFK24192.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 187-1] Length = 553 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 84 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 136 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 137 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 196 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 197 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 238 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 239 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 283 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 284 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 326 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 327 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 379 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 380 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 413 >gi|154503206|ref|ZP_02040266.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149] gi|153796200|gb|EDN78620.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149] Length = 457 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 112/323 (34%), Gaps = 60/323 (18%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + + ++ +G+ G GGAGF T K R +++N E EP R + Sbjct: 10 MDMKELSSILQQNGIVGAGGAGFPTYAKL-------DQRAETIILNCAECEPLLRLHRQL 62 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 + +++ + A+GA I ++ + + E++++ + G Sbjct: 63 LEKYAREIVDTFHLVGQAVGAKEVIIGIKKAYKQTIEAVESVI---------------GE 107 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++ + Y G+E L+ + GK +P P G+ V NVE+I V Sbjct: 108 YPEVRLGLLDEVYPAGDEVVLIYEVTGKVVRP---GGLPIESGV-----AVFNVETIYNV 159 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 + ++ KL S+ V +P TV + T +E++ G Sbjct: 160 ----------WRAMNQQTPVVDKLVSVVAEVEHPVTVRVPIGTTIEEVVALAGGTTVKDP 209 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 GG + + +G T AV+V+ + ++K S Sbjct: 210 ----VYFIGGPMMGFIGSGSQPVT-------------KTTNAVLVLPQDHYLVKRKRSKS 252 Query: 338 V---FYKHESCGQCTPCREGTGW 357 C QC+ C + Sbjct: 253 SIDMKRAAACCCQCSMCTDLCPR 275 >gi|238895009|ref|YP_002919743.1| electron transport complex protein RnfC [Klebsiella pneumoniae NTUH-K2044] gi|238547325|dbj|BAH63676.1| electron transport complex protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 753 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 65/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + I + Y G L + L GK+ Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGEAVTRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|83311714|ref|YP_421978.1| electron transport complex protein rnfC [Magnetospirillum magneticum AMB-1] gi|82946555|dbj|BAE51419.1| Electron transport complex protein rnfC [Magnetospirillum magneticum AMB-1] Length = 498 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 117/334 (35%), Gaps = 64/334 (19%) Query: 22 DSMSRGHWDNVDKILEKGRDWIINEVK----ASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77 DS + W ++ NE+K +G+ G GGA F + +K + + Sbjct: 102 DSDGKDEWAEPMPVIADPFAASANEIKARVAEAGIVGMGGATFPSAVKLGLGNQ---HKL 158 Query: 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137 L++N E EP D +MR +++G I + A+GA I V + +SL+ Sbjct: 159 EILLLNGAECEPYLTCDDRVMREFAEQVVDGARIMAHALGAPKVIIAVEDNKPQAVDSLK 218 Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197 A + ++ V Y G E L +++ G++ R A Sbjct: 219 AEAAK---------------TPNVDVVGVPVQYPMGAERHLTQAVTGRETPARK---LTA 260 Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 +VG+ V+NV + V +R G S G V P +E Sbjct: 261 DVGV-----VVHNVATARAVHQAVRLGRPLLSRVVT---------VSGGAVAEPKNIEVP 306 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + EL+ CGG+ +I GG M G + + GT Sbjct: 307 LGTRVSELL-DFCGGVSA---AAKRIISGGP---------MMGQPLPSLDVA---VVKGT 350 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351 + ++ + ++ + + C +C C Sbjct: 351 SGILALTQAE---------TNEHAPSPCIRCGSC 375 >gi|324019506|gb|EGB88725.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 117-3] Length = 543 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 77 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 129 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 130 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 189 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 190 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 231 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G + P Sbjct: 232 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 276 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 277 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 319 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + +SC +C+ C + + + + KG Sbjct: 320 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 372 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 373 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 406 >gi|325497183|gb|EGC95042.1| electron transport complex protein RnfC [Escherichia fergusonii ECD227] Length = 726 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIERDGWLDYRN---HSREELIARIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQLH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|157363153|ref|YP_001469920.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga lettingae TMO] gi|157313757|gb|ABV32856.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga lettingae TMO] Length = 437 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 120/346 (34%), Gaps = 74/346 (21%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 + + W+ + R+ ++ VK +G+ G GGA F T +K + D Sbjct: 106 DDW---EYLDHKDWEKL------SREELLEVVKKAGIVGLGGAMFPTHVKLNPPKDKKID 156 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 L++NA E EP D +M + IEG I + +F+ V + + Sbjct: 157 ---TLIINAAECEPYLTIDHRLMLEKAEDFIEGIRIVMKILQVQKSFVGVESNKLDAYKH 213 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L++ ++GS +I V Y G E L+ ++ G+K Sbjct: 214 LKS---------IVGSE-------EIEVKLLKTKYPQGAEKQLIYAITGRKVPV---GGL 254 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTV 254 P +VG+ V NV+++ + + + ++SG +N P V Sbjct: 255 PMDVGV-----VVQNVQTVIAIKHAVVD----------RKPLVERGLTVSGEGINKPANV 299 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 + T ++LIE G VI GG A + Sbjct: 300 IARIGTTVNQLIELAGGLKEEAER----VILGGPMTGI--AINRLDIPILK--------- 344 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360 GT+ + V+ + + ++C +CT C ++ Sbjct: 345 -GTSGITVLLKEKQPV-----------QKNCIRCTKCVVACPMGLQ 378 >gi|325478991|gb|EGC82092.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 441 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 124/353 (35%), Gaps = 56/353 (15%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + I+ ++K +G+ G GGA F +K+ + +++N E EP D +M++ Sbjct: 123 EEIVAKIKEAGIVGMGGAAFPAHIKYQ-----PTKPVDTVIINGAECEPYITCDDYLMKN 177 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 P +++ V A A+ A + + + +S+ AA+++ ++D Sbjct: 178 RPERILKALVQAMKAVDAKKGIVAIEDNKPKAYDSMIAALEKIAKEN---------SNLD 228 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I + Y G+E +++ ++ P +VG V+NV ++ + Sbjct: 229 IEIKKLVTKYPQGDEKRIIDVCLNRQV---PSGGLPMDVG-----AIVSNVSTMNAIYEA 280 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 L Y ++ +++G V P + F+ IE+ G D+ Sbjct: 281 LYMDKPLY----------ERIVTVTGKAVKSPTNMIVRCGTEFNHCIEQAGGA-----DD 325 Query: 280 LLAVIPGGSSVPCL------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 + ++ GG P + I+ + + S ++ + Sbjct: 326 IAKLVNGGPMCGIAQPDLNRPVEKASNCILVLASDEAKPLDVDPCIRCSRCVSVCPVELL 385 Query: 334 -WRLSVFYKHES-----------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 + F E C +C C ++E + G Q R+ Sbjct: 386 PLYIHKFSLEERFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGKRQIRQ 438 >gi|326791176|ref|YP_004308997.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium lentocellum DSM 5427] gi|326541940|gb|ADZ83799.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium lentocellum DSM 5427] Length = 439 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 116/330 (35%), Gaps = 64/330 (19%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 ++ + N+ K + +I VK +GL G GGA F T +K S P Y+++N Sbjct: 115 AKSDYKNLTK------EELIGLVKEAGLVGMGGATFPTHVKLSTPPDK---TVEYIIING 165 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 E EP D +M +IEG I A I + + + ++ Sbjct: 166 AECEPYLTSDHRVMLENGEEVIEGIKILLEVYKEAKAIIGIENNKMDAIKQMK------- 218 Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 +L N++ + V Y G E L+ ++ K+ P K P ++G Sbjct: 219 ---MLAKNTE-----RLEVVTLDTKYPQGSEKHLIYAIT-KREVPSGK--LPIDIG---- 263 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264 V N++S+ V + +G + G V PC VE + +F E Sbjct: 264 -CIVQNIDSMVAVCRAVTKGQPVMRRIVTVSGSG---------VKKPCNVEVKVGTSFKE 313 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++E + + +I GG + + GT+AV+ Sbjct: 314 VLEYA----EWDMERTVKIIAGGPMMGIAISDVNIPV------------MKGTSAVLCFT 357 Query: 325 RSTDIIKAIWRLSVFYKHESCGQC-TPCRE 353 + + H CG+C T C Sbjct: 358 DE----EVTSVPTTHCMH--CGKCVTVCPM 381 >gi|315651309|ref|ZP_07904337.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium saburreum DSM 3986] gi|315486461|gb|EFU76815.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium saburreum DSM 3986] Length = 448 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 98/272 (36%), Gaps = 41/272 (15%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + + + + +D I N VK +G+ G GGAGF T +K S + D Y+ Sbjct: 104 KEYRTVEGFGERKDYTKLSKDEIRNIVKEAGIVGLGGAGFPTHVKLSPKNENEID---YI 160 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +VN E EP D +M EP +I G I I + + E L+ V Sbjct: 161 IVNGAECEPYLTSDYRLMMEEPEKIIGGLKIILQLFPNAKGIIGIENNKPKAVEKLRELV 220 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 + I V Y G E +L+ + G+K PA+VG Sbjct: 221 KN---------------ESKIEVVELYTKYPQGGERSLIYACTGRKLN---SSKLPADVG 262 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMS 259 V+N +++ + Y+ + ++ +I+G V P + Sbjct: 263 -----CIVDNTDTVISI----------YNAVAKSTPLIRRIVTITGDAVTTPQNFKVRTG 307 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291 + + ELIE G V+ GG + Sbjct: 308 MNYQELIEAAGG----FKKEPRKVLSGGPMMG 335 >gi|283785156|ref|YP_003365021.1| electron transport complex protein [Citrobacter rodentium ICC168] gi|282948610|emb|CBG88201.1| electron transport complex protein [Citrobacter rodentium ICC168] Length = 678 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 67/388 (17%), Positives = 124/388 (31%), Gaps = 76/388 (19%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + L RD +I + G+ G GGAGF TG+K + D+ L++NA E EP Sbjct: 122 EGWPDYLSHSRDELITRIHQYGVAGLGGAGFPTGVKL----QGGGDKIATLIINAAECEP 177 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M+ ++EG I + + I + + L+A + + + Sbjct: 178 YITADDRLMQDCAAEIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAH----- 232 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 DI V Y G L + L GK+ +++G+ + Sbjct: 233 ----------DIAVRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIGV-----LMQ 274 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEK 268 NV + V + G ++ +++G V P V + L+ Sbjct: 275 NVGTAWAVKRAVIDGEPLT----------ERVVTLTGEAVRRPGNVWARLGTPVRHLLND 324 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 VI GG + +V + Sbjct: 325 AGFCPSAD----QMVIMGGPLMGF--TLPWLDVP------------------VVKITNCL 360 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 + + + + + C +C+ C + + + + KG + + ++ IE Sbjct: 361 LAPSATEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH--DKATAHNIADCIE 418 Query: 387 GRTICALGDAAAWPIQG---LIKNFRPL 411 C A AW L++ FR Sbjct: 419 ----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|288942376|ref|YP_003444616.1| RnfABCDGE type electron transport complex subunit C [Allochromatium vinosum DSM 180] gi|288897748|gb|ADC63584.1| electron transport complex, RnfABCDGE type, C subunit [Allochromatium vinosum DSM 180] Length = 504 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 92/265 (34%), Gaps = 39/265 (14%) Query: 27 GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 H V+ + I V A+G+ G GGA F + +K + H LV+N E Sbjct: 111 DHIQGVEDPFALAPEEIAARVAAAGIVGLGGATFPSAVKLDLRKRYA---VHTLVINGAE 167 Query: 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146 EP D +MR ++I+G + + A+G I + + Sbjct: 168 CEPYLTCDDRLMRERAESVIDGIRLMARALGVSRIVIGIEDNKPEAQA------------ 215 Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 D DI + Y G E L+++L G++ R A++G+ Sbjct: 216 ---AMAVAASIDPDIRIARLPTRYPMGSEKHLVQTLTGRETPARG---LTADIGV----- 264 Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266 V+N + V LR G + G + P V + +LI Sbjct: 265 VVHNPATAFAVHEALRLGHPLVARVVT---------VSGGAIARPANVRVPLGTRVQDLI 315 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVP 291 HCGG + L I GG + Sbjct: 316 -AHCGGFKDEPARL---ISGGPMMG 336 >gi|152970518|ref|YP_001335627.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955367|gb|ABR77397.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 715 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 65/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + I + Y G L + L GK+ Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGEAVTRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSANEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|170288502|ref|YP_001738740.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga sp. RQ2] gi|170176005|gb|ACB09057.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga sp. RQ2] Length = 435 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 112/324 (34%), Gaps = 65/324 (20%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 ++ I+ +K +G+ G GGA F T +K S P+ D L+VN E EP D + Sbjct: 117 MSKEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLIVNGAECEPVLTIDHRL 173 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M +++G +I +G A + V + +L+ GY Sbjct: 174 MLERAEDILQGILIMMKVLGVQEAVVGVESNKMDAYHNLKKVFK--------------GY 219 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 VD V Y G E L+ ++ G + PR P +VG+ V NV + V Sbjct: 220 PVD--VALLKTKYPQGAEKQLIYAITG-RVVPRGG--LPMDVGV-----VVQNVGTCVAV 269 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 + G + ++SG V P + + ++I +CGGI Sbjct: 270 KEAVVDGKPLV----------ERGMTVSGDAVKNPKNLVVRIGTPVKDVI-DYCGGIDEN 318 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + VI GG + + + GT+ + Sbjct: 319 TER---VILGGPMMGI--SITNLDIPV----------MKGTSGITAFLPE---------- 353 Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360 + C +C+ C + ++ Sbjct: 354 -KPQPQKPCIRCSECVQVCPMNLQ 376 >gi|409554|gb|AAA53584.1| NADH ubiquinone oxidoreductase subunit [Escherichia coli str. K-12 substr. W3110] Length = 112 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 48/93 (51%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 Q L + S+ ++ K L D IIN+VK +GL+GRGGAGFSTG+KWS MPK S Sbjct: 20 QPVWLDEYRSKNGYEGRRKALTGLSPDEIINQVKDAGLKGRGGAGFSTGLKWSLMPKDES 79 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIE 107 YL+ NADE EPGT KDR +M PH L+E Sbjct: 80 MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVE 112 >gi|148269816|ref|YP_001244276.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga petrophila RKU-1] gi|147735360|gb|ABQ46700.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga petrophila RKU-1] Length = 435 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 112/324 (34%), Gaps = 65/324 (20%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 ++ I+ +K +G+ G GGA F T +K S P+ D L++N E EP D + Sbjct: 117 MSKEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLIINGAECEPVLTIDHRL 173 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M +++G +I +G A + V + +L+ GY Sbjct: 174 MLERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GY 219 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 VD V Y G E L+ ++ G + PR P +VG+ V NV + V Sbjct: 220 PVD--VALLKTKYPQGAEKQLIYAITG-RVVPRGG--LPMDVGV-----VVQNVGTCVAV 269 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 + G + ++SG V P + + ++I +CGGI Sbjct: 270 KEAVVDGKPLV----------ERGMTVSGDAVKNPKNLVVRIGTPVKDVI-DYCGGIDEN 318 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + VI GG + + + GT+ + Sbjct: 319 TER---VILGGPMMGI--SITNLDIPV----------MKGTSGITAFLPE---------- 353 Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360 + C +C+ C + ++ Sbjct: 354 -KPQPQKPCIRCSECVQVCPMNLQ 376 >gi|307823818|ref|ZP_07654046.1| electron transport complex, RnfABCDGE type, C subunit [Methylobacter tundripaludum SV96] gi|307735112|gb|EFO05961.1| electron transport complex, RnfABCDGE type, C subunit [Methylobacter tundripaludum SV96] Length = 495 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 64/351 (18%), Positives = 115/351 (32%), Gaps = 62/351 (17%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 VD + + I V A+G+ G GGA F T +K + + L++N E EP Sbjct: 120 VDDPFQLNPEEISFRVGAAGIVGLGGATFPTAVKLNMGREN---HVDTLIINGSECEPYL 176 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 C D +M+ +I+G + + A + + + ++ AA + Sbjct: 177 CCDDRLMQERAGEIIDGVRLMLHGMETEQAVVAIEDNKPQAYVAMLAAAEP--------- 227 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 I V Y G + L+ + GK+ + VG+ T++NV Sbjct: 228 ------YAQIKVIQIPTRYPMGWDRQLIRYVTGKEVPV---GCRSSEVGV-----TIHNV 273 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + V +R G G + G V P VE EL E Sbjct: 274 GTAYAVHKAIRLGQPL---------LGRVVTVAGGAVKRPMNVEVPFGTLISELFEF--- 321 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 + +I GG M G + + GL + + G I+ Sbjct: 322 -CEVDKEQTARIIMGGP---------MMGDSLPHTGLPTVKATSG------------ILA 359 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382 + + C +C C +R ++ + + ++D ++ Sbjct: 360 LTKSELKNTEEQPCIRCAGCVSVCPAGLRPLD--MANNIRINQLDAAVDLG 408 >gi|206900502|ref|YP_002250813.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus thermophilum H-6-12] gi|206739605|gb|ACI18663.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus thermophilum H-6-12] Length = 437 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 115/340 (33%), Gaps = 65/340 (19%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 D I ++ +G+ G GGA F T +K S P+ D +++N E EP D + Sbjct: 120 LSPDEIKTRIREAGIVGLGGAAFPTHVKVSPPPEKKID---TVILNGAECEPYLTIDYRL 176 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M +P +IEG I + +G I V E L+ Sbjct: 177 MLEKPELIIEGLRILMYVLGVKRGIIGVEDNKKDAVEVLKK-----------------YA 219 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D DI + Y G E L++++ + P P VNNV + A + Sbjct: 220 DSDIEIVTLPTKYPQGSEKHLIKAILD-REVPSGGLP-------MDVGVVVNNVGTAAAI 271 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 R G +RG + VN P VE + +LIE H GG + Sbjct: 272 AEHFRTGLPLI-------SRGVTVTG--EGVNSPKNVEVLIGTPVIKLIE-HAGGFK--- 318 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 G L G M G + + GT+ V+V Sbjct: 319 ---------GKPGKILFGGPMMGVAIYDLNIP---IIKGTSGVVVFPEEK---------V 357 Query: 338 VFYKHESCGQCTPCREGTGW--MMRVMER-LVKGIAQKRE 374 +Y+ C +C C + M + R + KG + E Sbjct: 358 EYYEPIPCVRCGKCLDVCPMGLMPTTLARYVKKGKLIEAE 397 >gi|51246885|ref|YP_066769.1| propanediol utilization protein (PduS) [Desulfotalea psychrophila LSv54] gi|50877922|emb|CAG37762.1| related to propanediol utilization protein (PduS) [Desulfotalea psychrophila LSv54] Length = 447 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 54/325 (16%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 +D ++ + +G+ G GGAGF +K+ + ++ N E EP D+ I Sbjct: 3 MNKDSLLRSILDAGIVGEGGAGFPAHVKYDT-------QVDTVIANGCECEPLLHTDQHI 55 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 MR ++ GA I ++ ++ + ++ G Sbjct: 56 MRTRAADIVVAMQAIVSVTGATRGVIGIKRKYTEIAKIFADCIE------------GTG- 102 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 + + Y G+E L+ + GK P P +VG V NV ++A V Sbjct: 103 ---LELVQLDNFYPAGDEQTLVYEVTGKTIPP---LGLPKDVG-----AVVANVGTLAGV 151 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 + + K+ +++G+V P + + E + HCGG Sbjct: 152 ADAM-----------KGTPVTHKIVTVTGNVGSPAVIRVPLGTKLSECL-AHCGGATIAD 199 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 I GG M + + T +I++ R + R Sbjct: 200 P---VYILGGP--------MMGRMVDSAEEFAAKVVTKTTGGLIILPRGHYLHTMASRDL 248 Query: 338 VFYKHESCGQCTPCREGTGWMMRVM 362 + ++ C CR T R + Sbjct: 249 QSMQRQAATACIQCRLCTELCPRYL 273 >gi|288935201|ref|YP_003439260.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella variicola At-22] gi|288889910|gb|ADC58228.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella variicola At-22] Length = 719 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IDADGEDRWIERDGWSDYQ---VRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ +++G I + + I + + Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVDGIRILAHILQPDEVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + I + Y G L + L GK+ Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + + + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDGEPLT----------ERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + + Sbjct: 310 VWARLGTPVRHLLNDAGFCASAEP----MVIMGGPLMGF--------------------T 345 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 G +V + + + + + + C +C+ C + + + + KG Sbjct: 346 LPGLDVPVVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|303235326|ref|ZP_07321944.1| putative electron transport complex protein RnfC [Finegoldia magna BVS033A4] gi|302493640|gb|EFL53428.1| putative electron transport complex protein RnfC [Finegoldia magna BVS033A4] Length = 442 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 60/320 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ I+ +K +G+ G GGAGF T +K M K + +++N E EP D+ Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHLK---MNKKPDVKIEQVILNGAECEPYLTSDQL 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M P I G I + +I V + Q A+ + N Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNAAKDEKN---- 225 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + Y G+E L+ ++ GKK K G+ G N+ S Sbjct: 226 ----ISICSVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + + + P + + F +L+ +C G + Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPVGTKFKDLV-DYCDGFKET 323 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 ++ GG + E + T +I M+ Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIICMNEKD--------- 359 Query: 337 SVFYKHESCGQCTPCREGTG 356 + E C +C C + Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379 >gi|169824043|ref|YP_001691654.1| electron transport complex protein [Finegoldia magna ATCC 29328] gi|167830848|dbj|BAG07764.1| electron transport complex protein [Finegoldia magna ATCC 29328] Length = 442 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 60/320 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ I+ +K +G+ G GGAGF T +K M K + +++N E EP D+ Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHLK---MNKKPDVKIEQVILNGAECEPYLTSDQL 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M P I G I + +I V + Q A+ + N Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNAAKDEKN---- 225 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + Y G+E L+ ++ GKK K G+ G N+ S Sbjct: 226 ----ISICSVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + + + P + + F +L+ +C G + Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPVGTKFKDLV-DYCDGFKET 323 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 ++ GG + E + T +I M+ Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIICMNEKD--------- 359 Query: 337 SVFYKHESCGQCTPCREGTG 356 + E C +C C + Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379 >gi|291614940|ref|YP_003525097.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] gi|291585052|gb|ADE12710.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 66/325 (20%), Positives = 113/325 (34%), Gaps = 61/325 (18%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 + G+ ++ ++ +G+ G GGA F +K + P+ D LVVN E EP Sbjct: 120 RDVESLGKKELLEAIQQTGISGLGGATFPAHVKLNVPPETAID---TLVVNGAECEPFLT 176 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D IM L+ G A A GA A I V +++AA+ Sbjct: 177 CDHRIMVERTQDLLRGIRFAMQASGAPRAVIGVEDNKPDAIAAIEAAL------------ 224 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 D + V Y G E ++ +L G++ PA++G+ VNNV Sbjct: 225 ---PLDGTVTVKALETKYPQGAEDTIIYALLGREI---PAGQRPASIGV-----LVNNVM 273 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271 ++A + +L G ++ +++G V P + L+E+ Sbjct: 274 TLAYLGRLLPAGEGIV----------ERVLTVAGPAVEKPGNYIVPIGTPLRFLLEQVGA 323 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 N +I GG + + + GT+ V+ R+ + Sbjct: 324 -----KSNASEIILGGPMMGMTISS--LDVPVTK----------GTSGVLAFGRAQLPEE 366 Query: 332 AIWRLSVFYKHESCGQCTPCREGTG 356 A SC +C C + Sbjct: 367 APKVY-------SCIKCGECLKVCP 384 >gi|150017309|ref|YP_001309563.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium beijerinckii NCIMB 8052] gi|149903774|gb|ABR34607.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium beijerinckii NCIMB 8052] Length = 437 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 68/357 (19%), Positives = 121/357 (33%), Gaps = 70/357 (19%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 W+N++K +++ +K +G+ G GGA F T +K S + +VNA E Sbjct: 115 DWENLEK------KEVLDIIKNAGIVGMGGATFPTHVKLS-----PNKEVDTFIVNAAEC 163 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +M ++ G I +G I + + ++ A Sbjct: 164 EPYLTADYRMMIEYADRIVTGVKIVMKTLGVSKGIIGIEDNKPEAVKVMKEAFK------ 217 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 G VDI Y G E L++ L ++ P +VG+ Sbjct: 218 --------GTSVDI--VALPTKYPQGAEKMLIKVLTSREV---PSGGLPMDVGV-----V 259 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V NV ++ + + G ++ ++SG + P + + +F E I Sbjct: 260 VQNVGTVIAIYDAVVNGIPIIQ----------RVTTVSGDAIKEPKNLLLRIGTSFKEAI 309 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 +CGG + L I GG + A + G + ++ + + Sbjct: 310 -SYCGGFSKTPEKL---IMGGPMMGM--AQFSLDVPV----------IKGVSGILALSKD 353 Query: 327 TDIIKAIWRLSVFYKHESCGQCT-PCREGT-GWMMRVMERLVKGIAQKREIDLLYEV 381 CG+C C G M+ ++ K K E +LL + Sbjct: 354 ------AINSGEESPCIRCGRCVEACPMGLIPSMLSILGERHKFKEAKEEYNLLNCI 404 >gi|262044609|ref|ZP_06017664.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038010|gb|EEW39226.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 582 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 65/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + I + Y G L + L GK+ Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGEAVTRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|157145890|ref|YP_001453209.1| electron transport complex protein RnfC [Citrobacter koseri ATCC BAA-895] gi|166225089|sp|A8AH10|RNFC_CITK8 RecName: Full=Electron transport complex protein rnfC gi|157083095|gb|ABV12773.1| hypothetical protein CKO_01641 [Citrobacter koseri ATCC BAA-895] Length = 705 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIERDGWADYQR---RSREELITRIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLADAH---------------DIALRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGESVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVSHLLNDAGFCSSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSATEMGETPEEQGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI---KNFRPL 411 + + ++ IE C A AW I + FR Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSSIPLVQYFRQE 439 >gi|53802977|ref|YP_115288.1| electron transport complex protein RnfC [Methylococcus capsulatus str. Bath] gi|53756738|gb|AAU91029.1| electron transport complex, C subunit [Methylococcus capsulatus str. Bath] Length = 523 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 65/361 (18%), Positives = 110/361 (30%), Gaps = 64/361 (17%) Query: 16 QGKSLS-DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 G+ L+ ++ + + + D + + +G+ G GGA F T +K Sbjct: 105 DGEDLAFETEAHPDYQRLA------PDELRRIIFEAGIVGLGGAAFPTAVK----TDPGH 154 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 L++N E EP D ++RH P ++EG I +G + + + Sbjct: 155 RAIDTLILNGAECEPYITCDDSLLRHFPREVLEGARILMRVLGVERCLLGIEDDMPEAIR 214 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 A+ E G DI V Y G E L+ L G++ R Sbjct: 215 ----ALREIQE---------TGEYQDIDVITVPALYPSGGEKQLIRILTGREVPTRG--- 258 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254 PA+ G+ NV + A V + RG +G + P Sbjct: 259 IPADAGV-----VCQNVGTAAAVYRAVVRGEPLIERIVTVTGKG---------IRNPGNW 304 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 + +L+ ++ GG G + L I GG + + + + + G G Sbjct: 305 LTRIGTPIADLV-RYSGGYSGAAERL---ILGGPMMGISLSSDALPLVKAANCVLVTGRG 360 Query: 315 LGTAAVIVMDRSTDIIKA-------------------IWRLSVFYKHESCGQCTPCREGT 355 T + A R Y C +C C Sbjct: 361 ETTGPKQALPCIRCGACAEVCPINLLPQQLYWYSRADNLRRVEEYHVTDCIECGCCDYVC 420 Query: 356 G 356 Sbjct: 421 P 421 >gi|324113403|gb|EGC07378.1| electron transporter [Escherichia fergusonii B253] Length = 627 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIERDGWLDYRN---HSREELIARIHQFGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + L + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQLH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|302381047|ref|ZP_07269507.1| putative electron transport complex protein RnfC [Finegoldia magna ACS-171-V-Col3] gi|302311094|gb|EFK93115.1| putative electron transport complex protein RnfC [Finegoldia magna ACS-171-V-Col3] Length = 442 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 60/320 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ I+ +K +G+ G GGAGF T +K M K + +++N E EP D+ Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHLK---MNKKPDVKIEQVILNGAECEPYLTSDQL 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M P I G I + +I V + Q A+ + N Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNASKDEKN---- 225 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + Y G+E L+ ++ GKK K G+ G N+ S Sbjct: 226 ----ISICSVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + + + P + + F +L+ +C G + Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPVGTKFKDLV-DYCDGFKET 323 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 ++ GG + E + T +I M+ Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIICMNEKD--------- 359 Query: 337 SVFYKHESCGQCTPCREGTG 356 + E C +C C + Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379 >gi|312898224|ref|ZP_07757615.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera micronuciformis F0359] gi|310620721|gb|EFQ04290.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera micronuciformis F0359] Length = 444 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 109/331 (32%), Gaps = 70/331 (21%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 W +DK I+ +K +G+ G GGA F +K + +VNA E Sbjct: 115 DWKELDKA------QIVERIKQAGVVGCGGATFPAHVKL-----APNKPVDTFIVNAAEC 163 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +M E L+ G I A+G +I + L+ A Sbjct: 164 EPYLTCDYRLMLEEADKLVTGVQICMKALGVSKGYIGIEDNKPEAVSKLKEAFKNV---- 219 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 ++ V Y G E L++++ ++ QP P +VG Sbjct: 220 -----------PEVSVEALPTKYPQGAEKMLIKAVTDREVQP---GGLPMDVG-----CV 260 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V+NV ++ + + G + ++ +++G + P + + +F + Sbjct: 261 VSNVGTVIAITDAVCHGIPFI----------ERVTTVTGDCIKEPKNLRLRIGTSFQYAV 310 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 +CGG D VI GG + A + G + ++ + Sbjct: 311 -DYCGGFSAQPDR---VIAGGPMMGL--AQFQLDVSVAK----------GVSGILALSPE 354 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + + C +C C + Sbjct: 355 KCQVGV---------EDPCIRCGRCVDACPM 376 >gi|213582925|ref|ZP_03364751.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 456 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 79/397 (19%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + R W + R+ +I + G+ G GGAGF TG+K + D+ L Sbjct: 4 DRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTL 56 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 ++NA E EP D +M+ ++EG I + + I + + L+A + Sbjct: 57 IINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVL 116 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 + + DI + Y G L + L GK+ +++G Sbjct: 117 ADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 158 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259 + + NV + V + G ++ +++G ++ P V + Sbjct: 159 V-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGNVWARLG 203 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 L+ VI GG + Sbjct: 204 TPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------------- 240 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDL 377 +V + + ++ + + +SC +C+ C + + + + KG + Sbjct: 241 -VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH--DKAT 297 Query: 378 LYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + ++ IE C A AW L++ FR Sbjct: 298 AHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 327 >gi|283833246|ref|ZP_06352987.1| electron transport complex protein RnfC [Citrobacter youngae ATCC 29220] gi|291070882|gb|EFE08991.1| electron transport complex protein RnfC [Citrobacter youngae ATCC 29220] Length = 674 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIERDGWADYR---SRSREELIARIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + + + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILLGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + + + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASEMGETPEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKSTTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|284118231|ref|ZP_06386764.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829467|gb|EFC33837.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp. WGA-A3] Length = 110 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 T ++ +LS F++ ESCGQC PCR GT + +M ++ +G + ++D L ++ ++ Sbjct: 2 TCMVGQTLKLSTFFREESCGQCPPCRIGTEHLEELMAKIEEGTGTREDLDKLLQICGFVK 61 Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425 G C L AA +Q ++ FR EE + + C F Sbjct: 62 GTGYCTLVTGAAVLVQNSLRLFRHEFEEHVAK-RACPFN 99 >gi|310658706|ref|YP_003936427.1| electron transport complex protein [Clostridium sticklandii DSM 519] gi|308825484|emb|CBH21522.1| Electron transport complex protein [Clostridium sticklandii] Length = 442 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 107/329 (32%), Gaps = 60/329 (18%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 ++ + + ++ VK +G+ G GGA F T +K S + D +++N E EP Sbjct: 116 EVKDLSSEKLLEIVKNAGIVGMGGATFPTHVKLSPPKEKNID---VVILNGAECEPYLTA 172 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 D +M P ++ G + +G +I + S+ A G NS Sbjct: 173 DHRLMLETPEDVVNGLLGIMKILGVEKGYIGIEDNKPDCIASVSKAAQ--------GINS 224 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 I V Y G E L+ + ++ P + G+ VNNV + Sbjct: 225 -------IEVVGLRTKYPQGAEKQLIYACTNREV---PSGGLPMDAGV-----VVNNVAT 269 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A + +R G G ++ P + + + E+I++ G Sbjct: 270 AAQLAKTIRTGMPLIDRI---------CTVTGGAISNPKNILIKIGTLYSEIIDQAGG-- 318 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 VI GG + E+ + G++ ++ K + Sbjct: 319 --FKTQPSKVISGGPMMGI------------AQFTLEVPATKGSSGILCFTYDEAKAKEV 364 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVM 362 C +C C ++ + Sbjct: 365 QN---------CMRCAKCVNICPANLQPL 384 >gi|160932756|ref|ZP_02080145.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753] gi|156867830|gb|EDO61202.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753] Length = 444 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 75/357 (21%), Positives = 122/357 (34%), Gaps = 63/357 (17%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 W+ ++ + ++ +ASGL G GGAGF +K + + L++N E E Sbjct: 111 WEGLEPPKVETHQDLVKAARASGLVGLGGAGFPAHIKLNV---PEGRKIDTLIINVAECE 167 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D ++ G + + I V + L + Y+ Sbjct: 168 PYITADHREALENSWDVLSGIYLVKDLLNIDRTLIAVEKNKPDVIKVLS---EIAYSDTR 224 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 N + V Y G E L+++ G++ P P++VG V Sbjct: 225 DPEN-------KVRVLPLKARYPQGAEKVLVQACTGRRIGP---GKLPSDVG-----CLV 269 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIE 267 NV SIA + L+ G S K ++ G V P V + +++IE Sbjct: 270 MNVTSIAFLSRYLKTGMPLVS----------KRITVDGSAVMEPKNVIVPLGTPIEKVIE 319 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 CGG R G L G M G +D D L + A++ Sbjct: 320 -FCGGYR------------GDPAKILMGGPMMGLALDSDALPVL---KQNNAILAFQEQD 363 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW--MMRVMERLVKGIAQKREIDLLYEVS 382 ++ A +C C C EG M + R V ++ID L ++ Sbjct: 364 AVLPA---------PTACIHCGRCVEGCPMHLMPPEISRAV----TTKDIDQLQKLG 407 >gi|146311475|ref|YP_001176549.1| electron transport complex protein RnfC [Enterobacter sp. 638] gi|145318351|gb|ABP60498.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter sp. 638] Length = 673 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ + R W+ + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IEPDGEDRWIDREGWNEYR---AQSREALIERIHQFGVAGLGGAGFPTGTKL----RGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIQTLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + DI + Y G L + L GK+ Sbjct: 223 MLRAVLAG---------------SHDIGLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAIIDGEPLT----------ERVVTLTGEAVSQPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+E + VI GG + Sbjct: 310 VWARLGTPVRHLLENAG----FSPGSEQMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASEMGEEQEEKGCIRCSACADACPADLLPQQLYWFSKGQLH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI---KNFRPL 411 + + ++ IE C A AW I + FR Sbjct: 406 --DKAKAHNLADCIE----CG---ACAWVCPSSIPLVQYFRQE 439 >gi|297587688|ref|ZP_06946332.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia magna ATCC 53516] gi|297574377|gb|EFH93097.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia magna ATCC 53516] Length = 442 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 100/320 (31%), Gaps = 60/320 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ I+ +K +G+ G GGAGF T +K M K + +++N E EP D+ Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHIK---MKKKPDVKIEEVILNGAECEPYLTSDQL 176 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M P I G I + +I V + Q A+ + +N Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNAAKDETN---- 225 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + Y G+E L+ ++ GKK K G+ G N+ S Sbjct: 226 ----ISICAVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + + + P + + F +L+ +C G + Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPIGTKFKDLV-DYCDGFKET 323 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 ++ GG + E + T +I M+ Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIIFMNEKD--------- 359 Query: 337 SVFYKHESCGQCTPCREGTG 356 + E C +C C + Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379 >gi|325280076|ref|YP_004252618.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter splanchnicus DSM 20712] gi|324311885|gb|ADY32438.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter splanchnicus DSM 20712] Length = 443 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 63/344 (18%), Positives = 113/344 (32%), Gaps = 73/344 (21%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 + ++ I+ + A+G+ G GGA F T +K + P ++ L++N E EP D Sbjct: 119 ITLSKEEIVKAIAAAGIVGMGGATFPTQVKLTPPPGNKAE---VLIINGVECEPYLTADH 175 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 IM + +I G I AI A I + LQ + G Sbjct: 176 RIMLEKAEEIIIGVQILMKAIDVKRAIIGIENNKKDAIAHLQ---------DIAGKVLG- 225 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 + + Y G E L+++ + P P V NV + Sbjct: 226 -----VEICPLKVKYPQGGEKQLIQA-TVNRAVPSGALPIAVGA-------VVQNVGTAL 272 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 V Y + ++ +++G V P + +LIE G Sbjct: 273 AV----------YEAVMKNKPLIERVVTVTGKSVKNPGNFLCRIGTPISKLIEAAGGM-- 320 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 ++ VI GG M +++ D GT+ V++++ +A Sbjct: 321 --PEDTAKVIGGGP--------MMGRTMVNIDS----PVMKGTSGVLLINEK----EAAR 362 Query: 335 RLSVFYKHESCGQCTPCREGTGWMMR-----------VMERLVK 367 R +C +C C + ++ER+ + Sbjct: 363 RPMR-----NCIRCGKCVSACPMGLEPYLLMKLSQFNLLERMEE 401 >gi|294784049|ref|ZP_06749371.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 1_1_41FAA] gi|294479861|gb|EFG27640.1| electron transport complex, RnfABCDGE type, C subunit [Fusobacterium sp. 1_1_41FAA] Length = 435 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 136/384 (35%), Gaps = 71/384 (18%) Query: 29 WDNVDKI---LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI + +++ ++ G+ G GGA F T +K + P D L++N Sbjct: 106 WAELTKIANWETADKKELLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P +++EG I + ++ + ES++ A + Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMKKATE---- 218 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++S+ ++ P+ VG+ Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + + G K+ +++G + P ++ ++ F Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVTGKAIKNPKNLKVAIGTPFSY 308 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ +CG R + L + GG M A M +E GT+ ++ + Sbjct: 309 IL-DYCGINRDEMERL---VMGGP--------MMGLAQMT----EEATVVKGTSGLLALT 352 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 YK ++C C+ C + + +RL + + + Sbjct: 353 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEAMAG--HNLM 401 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 402 DCIECGS-CAYICPANRPLAEAIK 424 >gi|160946965|ref|ZP_02094168.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270] gi|158447349|gb|EDP24344.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270] Length = 444 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 66/370 (17%), Positives = 128/370 (34%), Gaps = 71/370 (19%) Query: 42 WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 II+ +K +G+ G GGAGF T +K + Y+++N E EP D+ +M Sbjct: 126 DIIDAIKEAGIVGLGGAGFPTHVKLTA---REGQITDYIIINCAECEPYLTSDQLMMELY 182 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 P ++ G ++A A+GA + + + L+ A ++ Sbjct: 183 PEKVVMGLLLAMKAMGAKKGILGIEDNKPLAIDKLKEA---------------SKSYPEV 227 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V Y G++ L+++ G + VG+ V N + + + Sbjct: 228 TVSVVKTKYPQGDQKRLIQATTG---VVVPSGASTSAVGIR-----VVNANTAIAINDAV 279 Query: 222 RRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 G Y KL +++GH + P V + +++E G Sbjct: 280 LHGKPLY----------EKLVTMTGHALKEPQNVMVRVGSKVSDIVEFIGGYSSEPGK-- 327 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 +I GG M + + +G ++ M + KA+ Sbjct: 328 --IISGGP--------MMGETQYTPN----VTTGKAMGGLLFMTQEESAPKAV------- 366 Query: 341 KHESCGQCTPCREGTGWMMRVME-RLVKGIAQKREIDLLYEVSKNIEGRT---ICALGDA 396 C +C C + ++ + +L + E + L+ + IE + IC Sbjct: 367 --SPCIRCGRCVDICPVYLQPLYLQLYTLKNRVGEAEKLH-LMDCIECGSCSYICP---- 419 Query: 397 AAWPIQGLIK 406 + P+ I+ Sbjct: 420 SNRPLVETIR 429 >gi|297539546|ref|YP_003675315.1| RnfABCDGE type electron transport complex subunit C [Methylotenera sp. 301] gi|297258893|gb|ADI30738.1| electron transport complex, RnfABCDGE type, C subunit [Methylotenera sp. 301] Length = 640 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 91/265 (34%), Gaps = 47/265 (17%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 W N DK L +++ +++SG+ G GGA F T +K K H LV+NA E Sbjct: 134 GWRNADKKL------LVDSLRSSGIVGLGGATFPTHIKLRTNGKSN---VHTLVINAAEC 184 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +MR +I+G I +GA I + + ++ A Sbjct: 185 EPYITCDDMLMRERSDQVIKGIEIVQHLLGAEKCIIGIEDNKPQAASAMTTACA------ 238 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 D + V Y G+ L+ L + P K +VG+ Sbjct: 239 ----------DKAMQVKVVPTLYPSGDARRLIHLLLDIE-IPNDK--RSTDVGI-----Q 280 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 V N+ ++ V G + ++ +++G+V P E LI Sbjct: 281 VFNIATVLAVYRYFEFGEPAIN----------RIVTMTGNVVKPQNFEVLFGTPLQSLIA 330 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPC 292 G I GG + Sbjct: 331 AAGGAKADTTH----YIMGGPMMGF 351 >gi|153953486|ref|YP_001394251.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|153953490|ref|YP_001394255.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|146346367|gb|EDK32903.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] gi|146346371|gb|EDK32907.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555] Length = 442 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 68/327 (20%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K + + Y +VNA E EP D+ +MR+ ++ I ++GA Sbjct: 20 FPTHVKLNT-------KVKYFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAE 72 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++ + E ++L ++ KL V++ ++ Y G+E L+ Sbjct: 73 KIVIGLKNVYYNEIDALTNSIK------------KLNSSVELFLNRS--FYPAGDEQILV 118 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + GK P P+ VG V+NV ++ V L+ Y Sbjct: 119 YEVTGKTIAP---GAIPSTVG-----AVVSNVGTVFNVFEALKDEPVTY----------- 159 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP-CLPAGQM 298 K ++ G V P V+ + E IEK G G + VI GG + + + Sbjct: 160 KYVTVVGEVASPAIVKVPIGTKVTECIEKCGGATLGDY----VVIMGGPMMGKKISKEEA 215 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL----SVFYKHESCGQCTPCREG 354 ++ +IV+ + + A RL V +C QC C E Sbjct: 216 ENTVITKT----------NGGIIVIPK-DHYVAARERLTIEEMVHRAKAACEQCRYCTEL 264 Query: 355 TGWM--------MRVMERLVKGIAQKR 373 ++M + G + Sbjct: 265 CPRYQIGHPLHPHKIMRTMALGRNDEE 291 >gi|73982775|ref|XP_864277.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa isoform 3 [Canis familiaris] Length = 120 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 45/74 (60%), Positives = 50/74 (67%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIFTNLYG L + SRG W +IL KG DWI+ EVK SGLRGRGGAGF Sbjct: 35 LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94 Query: 62 TGMKWSFMPKVCSD 75 TG+KWSFM K Sbjct: 95 TGLKWSFMNKPSDG 108 >gi|126464670|ref|YP_001045783.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter sphaeroides ATCC 17029] gi|126106481|gb|ABN79011.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter sphaeroides ATCC 17029] Length = 517 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 121/340 (35%), Gaps = 65/340 (19%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I +V +G+ G GGA F + +K + K H LV+N E EP D +M Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRSKYD---LHTLVINGAECEPYLTCDDRLM 190 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R + +G I + A+G + + ++Q D Sbjct: 191 RERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQR--------------FDRALD 236 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 +R G S ++ ++SG V P V + E+I +CGG Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEP 337 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336 D LL GG + P +R ++ GT+ ++ + R T + + Sbjct: 338 DRLLL---GGPMMGQ-PIQNLRVPLV-----------KGTSGILALTRAETPGVDTM--- 379 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 C +C C + + E + Q +++ Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410 >gi|219854108|ref|YP_002471230.1| hypothetical protein CKR_0765 [Clostridium kluyveri NBRC 12016] gi|219854112|ref|YP_002471234.1| hypothetical protein CKR_0769 [Clostridium kluyveri NBRC 12016] gi|219567832|dbj|BAH05816.1| hypothetical protein [Clostridium kluyveri NBRC 12016] gi|219567836|dbj|BAH05820.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 443 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 68/327 (20%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K + + Y +VNA E EP D+ +MR+ ++ I ++GA Sbjct: 21 FPTHVKLNT-------KVKYFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAE 73 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++ + E ++L ++ KL V++ ++ Y G+E L+ Sbjct: 74 KIVIGLKNVYYNEIDALTNSIK------------KLNSSVELFLNRS--FYPAGDEQILV 119 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + GK P P+ VG V+NV ++ V L+ Y Sbjct: 120 YEVTGKTIAP---GAIPSTVG-----AVVSNVGTVFNVFEALKDEPVTY----------- 160 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP-CLPAGQM 298 K ++ G V P V+ + E IEK G G + VI GG + + + Sbjct: 161 KYVTVVGEVASPAIVKVPIGTKVTECIEKCGGATLGDY----VVIMGGPMMGKKISKEEA 216 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL----SVFYKHESCGQCTPCREG 354 ++ +IV+ + + A RL V +C QC C E Sbjct: 217 ENTVITKT----------NGGIIVIPK-DHYVAARERLTIEEMVHRAKAACEQCRYCTEL 265 Query: 355 TGWM--------MRVMERLVKGIAQKR 373 ++M + G + Sbjct: 266 CPRYQIGHPLHPHKIMRTMALGRNDEE 292 >gi|154249084|ref|YP_001409909.1| electron transport complex, RnfABCDGE type, C subunit [Fervidobacterium nodosum Rt17-B1] gi|154153020|gb|ABS60252.1| electron transport complex, RnfABCDGE type, C subunit [Fervidobacterium nodosum Rt17-B1] Length = 435 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 58/354 (16%), Positives = 120/354 (33%), Gaps = 74/354 (20%) Query: 27 GHWDNVDKI--LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 W+ + K+ ++ +++ +K +G+ G GGA F T +K + L++N Sbjct: 105 DDWELLPKLDYRSATKEELLDNIKKAGIVGLGGAMFPTHVKLN-----PPKPVDTLIING 159 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 E EP D +M ++ G IA +G +I + E L+ Sbjct: 160 AECEPYLTIDHRVMLEMSDEILIGIEIAKKILGVKEVYIGIENNKKDAIELLEK------ 213 Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 ++ ++ V Y G E L++++ G++ P++VG+ Sbjct: 214 -----------KWNGNVKVAALKTKYPQGAEKQLIKAITGREV---PSGGLPSDVGV--- 256 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFD 263 V NV ++ + + G + +++G V + Sbjct: 257 --VVQNVSTMLAIKEAVVDG----------KPLIERGLTLTGEGVKEKGNWWVRIGTPIS 304 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 +IEK G G + V+ GG + +P + I+ G + ++ Sbjct: 305 WIIEKLGNGFVEGLQEVK-VLMGGPMMG-IPVSSLDTPIL-----------KGNNGLTII 351 Query: 324 DRSTDIIKAIWRLSVFYKHES--CGQCTPCREGTGWMMR--VMERLVKGIAQKR 373 K ES C +C+ C ++ +++ L + Sbjct: 352 TEQ--------------KRESTNCIRCSYCVHVCPMNLQPYLLDLLSRKKKYDE 391 >gi|239787506|emb|CAX83976.1| Electron transport complex protein [uncultured bacterium] Length = 490 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 115/326 (35%), Gaps = 60/326 (18%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + I + V A+G+ G GGA F +K + L++N E EP Sbjct: 116 LADPFTASAKDISDRVAAAGIVGLGGAAFPASVKLTLGMNNK---LETLLLNGAECEPYL 172 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +MR +I+G I + A+GA + + + + + A A Sbjct: 173 TCDDRVMREYADEVIDGARIMAHALGAPKIVVAIEQNKPQAVDRMVQA---AKAFP---- 225 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 +I + Y G E L +++ G + R A++G+ V+NV Sbjct: 226 --------NIEIASVPVQYPMGSEKHLTQAITGLETPARK---LTADLGV-----VVHNV 269 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHC 270 + V +R G +++ ++S G V P VE + EL+ C Sbjct: 270 ATARAVHHAIRFG----------RPLLSRVVAVSGGAVAQPKNVEVPLGTLVSELV-AFC 318 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 GG+ G L I GG M G + + GT+ ++ + + Sbjct: 319 GGLVGTPARL---INGGP---------MMGQPLPSLNVP---VVKGTSGILAL----NAA 359 Query: 331 KAIWRLSVFYKHESCGQC-TPCREGT 355 + R + CG C T C G Sbjct: 360 EVNERPTSPCIR--CGTCVTICPCGL 383 >gi|221369207|ref|YP_002520303.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides KD131] gi|221162259|gb|ACM03230.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides KD131] Length = 517 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 65/340 (19%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I +V +G+ G GGA F + +K + K H LV+N E EP D +M Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYD---LHTLVINGAECEPYLTCDDRLM 190 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R + +G I + A+G + + ++Q D Sbjct: 191 RERAEEIADGVGIMARALGVRQIVVAIESNKAEAISAMQR--------------FDRALD 236 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 +R G S ++ ++SG V P V + E+I +CGG Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEP 337 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336 D LL GG + L+ + GT+ ++ + R T + + Sbjct: 338 DRLLL---GGPMMG-----------QPIQNLR-VPVVKGTSGILALTRAETPGVDTM--- 379 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 C +C C + + E + Q +++ Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410 >gi|290509259|ref|ZP_06548630.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55] gi|289778653|gb|EFD86650.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55] Length = 551 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IDADGEDRWIERDGWSDYQ---VRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ +++G I + + I + + Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVDGIRILAHILQPDEVLIGIEENKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + I + Y G L + L GK+ Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + + + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDGEPLT----------ERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + + Sbjct: 310 VWARLGTPVRHLLNDAGFCASAEP----MVIMGGPLMGF--------------------T 345 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 G +V + + + + + + C +C+ C + + + + KG Sbjct: 346 LPGLDVPVVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|289424016|ref|ZP_06425805.1| electron transport complex protein RnfC [Peptostreptococcus anaerobius 653-L] gi|289155591|gb|EFD04267.1| electron transport complex protein RnfC [Peptostreptococcus anaerobius 653-L] Length = 447 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 118/330 (35%), Gaps = 58/330 (17%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 + E ++ I+ +K +G+ G GGA F +K S P ++ ++++N E EP Sbjct: 114 KDVEELSKEEIVGIIKEAGIVGMGGATFPNHVKISPPPDSKAE---FVILNGAECEPYLT 170 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D +M P ++ G A+ + FI + +++ A Sbjct: 171 ADDRLMVEYPEKVVYGLRALLKALDVNKGFIGIEANKPEALKNVTEAAKP---------- 220 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 +I V Y G E L+ + G++ P VG V+NV Sbjct: 221 -----YPEIEVVGMQVKYPEGAEKQLIYACTGREV---PSGALPIAVG-----AVVSNVA 267 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 + A + +R G T + + P + + F E+IE+ CGG Sbjct: 268 TAAAISNAIREGMPLVERI-------TTVTGPC--IKEPKNLITKVGTKFSEIIEQ-CGG 317 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 I+ G +I GG + ++ + G++ ++++ + A Sbjct: 318 IKEGVTASK-LIAGGPMMGL------------AQYTSDISTNKGSSGILILPEE--MAVA 362 Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 ++ +C +C C + ++ + Sbjct: 363 PEQM-------NCIKCGRCTDVCPAFLQPL 385 >gi|15602250|ref|NP_245322.1| electron transport complex protein RnfC [Pasteurella multocida subsp. multocida str. Pm70] gi|17368785|sp|Q9CNP2|RNFC_PASMU RecName: Full=Electron transport complex protein rnfC gi|12720632|gb|AAK02469.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 835 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 61/388 (15%), Positives = 119/388 (30%), Gaps = 76/388 (19%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 +D L + + +I ++ +G+ G GGA F T K K L++N E EP Sbjct: 122 QPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHSAEKQ----VKLLIINGAECEP 177 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +MR +IEG I + + I V +L+ + Sbjct: 178 YITCDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALRQVLQGAN----- 232 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 DI + Y G L++ L G + +++G+ + Sbjct: 233 ----------DIEIRVIPTKYPSGAAKQLIQILTGMEV---PSGQRSSSIGV-----LMQ 274 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV + V + ++ +++G V + + +L+++ Sbjct: 275 NVATAFAVKRAIMDDEPLI----------ERVVTLTGDKVRHKGNYWVRLGTPIYQLLQQ 324 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 +D+ V GG + + + L Sbjct: 325 VD----YHYDDRFPVFMGGPMMGFILPDLQAPVTKMTNCLLAPDHF-------------- 366 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 + +SC +C+ C + M + + + ++ + Y + IE Sbjct: 367 ------EYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFARSEDHEKSEE--YALKDCIE 418 Query: 387 GRTICALGDAAAWPIQG---LIKNFRPL 411 C L A+ LI+ FR Sbjct: 419 ----CGLC---AYVCPSHIPLIQYFRQE 439 >gi|325263576|ref|ZP_08130310.1| PduS protein [Clostridium sp. D5] gi|324031285|gb|EGB92566.1| PduS protein [Clostridium sp. D5] Length = 450 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 110/323 (34%), Gaps = 60/323 (18%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + + ++ +G+ G GGAGF T K +R +++N E EP R + Sbjct: 2 MEMKELSSILQLNGIVGAGGAGFPTYAKL-------DERAETIILNCAECEPLLRLHRQL 54 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 + ++E + A+GA I ++ + + E+L+ + G Sbjct: 55 LEKYAQEIVETFHMMGQAVGAKDVVIGIKKAYKKTIEALEEVI---------------GE 99 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++ + Y G+E L+ + GK +P P G+ V NVE++ V Sbjct: 100 YPEVRLGLLDEVYPAGDEVVLIYEVTGKVVRP---GGIPIESGV-----AVFNVETVYNV 151 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 + + A KL SI V +P TV + T +E + Sbjct: 152 YRAVNQQAPVTD----------KLVSIVAEVEHPVTVRVPIGTTIEETVRLAGNVTAKDP 201 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 GG + + +G T AV+V+ II+ R S Sbjct: 202 ----VYFIGGPMMGFIGSGSQPVT-------------KTTNAVLVLPEEHLIIQKKRRKS 244 Query: 338 V---FYKHESCGQCTPCREGTGW 357 C QCT C + Sbjct: 245 SIDLKRAAACCCQCTMCTDLCPR 267 >gi|332560814|ref|ZP_08415132.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N] gi|332274612|gb|EGJ19928.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N] Length = 517 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 65/340 (19%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I +V +G+ G GGA F + +K + K H LV+N E EP D +M Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYD---LHTLVINGAECEPYLTCDDRLM 190 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R + +G I + A+G + + ++Q D Sbjct: 191 RERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQR--------------FDRALD 236 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 +R G S ++ ++SG V P V + E++ HCGG Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEP 337 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336 D LL GG + L+ + GT+ ++ + R T + + Sbjct: 338 DRLLL---GGPMMG-----------QPIQNLR-VPVVKGTSGILALTRAETPGVDTM--- 379 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 C +C C + + E + Q +++ Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410 >gi|77465208|ref|YP_354711.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1] gi|77389626|gb|ABA80810.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1] Length = 517 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 65/340 (19%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I +V +G+ G GGA F + +K + K H LV+N E EP D +M Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYD---LHTLVINGAECEPYLTCDDRLM 190 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R + +G I + A+G + + ++Q D Sbjct: 191 RERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQR--------------FDRALD 236 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 +R G S ++ ++SG V P V + E++ HCGG Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEP 337 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336 D LL GG + L+ + GT+ ++ + R T + + Sbjct: 338 DRLLL---GGPMMG-----------QPIQNLR-VPVVKGTSGILALTRAETPGVDTM--- 379 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376 C +C C + + E + Q +++ Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410 >gi|254468948|ref|ZP_05082354.1| electron transport complex protein RnfC [beta proteobacterium KB13] gi|207087758|gb|EDZ65041.1| electron transport complex protein RnfC [beta proteobacterium KB13] Length = 503 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 112/323 (34%), Gaps = 65/323 (20%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + + ++K+SG+ G GGA F T +K + S++ L+VNA E EP D Sbjct: 124 LSSEALYEKMKSSGIVGLGGATFPTHIKLN------SNKIKTLIVNAAECEPYITCDDMA 177 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M+ + IEG I + A I + + E L+ +++ Sbjct: 178 MQEKTKEFIEGIQITMDILKIPHAIIGIEDNKPKAIEKLKTVLNKSK------------- 224 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 +I + Y G+E L+ + G K K P + G+ V NV ++ + Sbjct: 225 --NISIKVVPTVYPSGDEKRLIYLMLGLKI---SKEKRPVDFGI-----QVFNVATLISI 274 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 S ++ +++G + P E + ELI+ G Sbjct: 275 GRFFYHSEPVIS----------RIVTVTGALKRPNNYEALIGTPIQELIKDAGG------ 318 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 + +I GG M G + + + + A+ +S D + Sbjct: 319 KSDQEIIMGGP---------MMGFKLPHTDVSVTKAMNCLLAITDEMKSKDTFEM----- 364 Query: 338 VFYKHESCGQCTPCREGTGWMMR 360 C +CT C E ++ Sbjct: 365 ------PCIRCTKCVEVCPAQLQ 381 >gi|330015738|ref|ZP_08308240.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella sp. MS 92-3] gi|328531063|gb|EGF57918.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella sp. MS 92-3] Length = 565 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 125/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF G K + Sbjct: 75 IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPPGSKL----RGGG 127 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 128 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 187 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + + I + Y G L + L GK+ Sbjct: 188 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 229 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V P Sbjct: 230 RSSDIGV-----LMQNVGTAYAVKRAVVDGEPLT----------ERVVTLTGEAVTRPGN 274 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 275 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 317 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 318 -------VVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 370 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 371 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 404 >gi|77920097|ref|YP_357912.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter carbinolicus DSM 2380] gi|77546180|gb|ABA89742.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter carbinolicus DSM 2380] Length = 663 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 62/127 (48%) Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358 + ++D + + LG V D+ T I+ A + ESCG+CTPCR GT + Sbjct: 30 FDQMDEFDPGNPVKAFLGANGFFVFDKETSILDAAHQYVATAARESCGKCTPCRVGTEVL 89 Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 +E L KG +D + ++++I+ ++C LG A P+ ++++FR E I + Sbjct: 90 TSKLEALSKGELGADAVDEILTLAEHIKSTSMCGLGQTATDPLIAMLRHFRDEFEVNIGR 149 Query: 419 YHRCNFQ 425 Y Q Sbjct: 150 YDETGRQ 156 >gi|160878369|ref|YP_001557337.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium phytofermentans ISDg] gi|160427035|gb|ABX40598.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium phytofermentans ISDg] Length = 439 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 67/344 (19%), Positives = 111/344 (32%), Gaps = 68/344 (19%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 ++ + K + I + +K +G+ G GGAGF T +K + D YL++N E Sbjct: 116 DYETLKK------EQIRSIIKEAGIVGMGGAGFPTHIKLTPKDDSAID---YLIINGSEC 166 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +M E + LI+G I A I V L A+ Sbjct: 167 EPYLTSDYRMMLEETNRLIKGIKITLRLFENAKAIIAVEDNKPEAISMLTHALRN----- 221 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + I + Y G E L+ ++ G+K + P+++G Sbjct: 222 ----------ENRIELKVIKTKYPQGAERVLIYAITGRKMNSTM---LPSDIG-----CI 263 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 VNNV+++ V + ++ ++SG V + EL+ Sbjct: 264 VNNVDTMISVCRAVAE----------NTPLIKRVVTVSGDAVKNQGNFIVLTGTNYSELV 313 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 E G +I GG + A + + + V M+ Sbjct: 314 EAVGG----FSAKPAKLISGGPMMGL--ALYSLDIPVTKTSSALL--AFASDEVADMEEG 365 Query: 327 TDIIKAIWRLSVFYKHESCGQCT---PCREGTGWMMRVMERLVK 367 I CG+C P R +M ER Sbjct: 366 PCIR--------------CGRCVEVCPGRIVPQKLMEFAERFDD 395 >gi|254446706|ref|ZP_05060181.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Verrucomicrobiae bacterium DG1235] gi|198256131|gb|EDY80440.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Verrucomicrobiae bacterium DG1235] Length = 456 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 114/335 (34%), Gaps = 65/335 (19%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + E + I+ V+ +GL G GGA F T +K + + H +++N E E Sbjct: 124 YFKSRNVDEMSQQEIVKAVQETGLVGLGGAAFPTHVKLT---PPKDHKVHTVLINGCECE 180 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D +M + L+ G I A+ A A I + E+++A Sbjct: 181 PFLTTDHRVMLEQAEDLVAGTRIFMKALNAERAIIGTENNKLDAVEAIRA---------- 230 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 KL D I V Y G E L ++L + +P++VGL V Sbjct: 231 -----KLPKDGSITVQAVKTKYPQGAEKMLAKALMNLEI---PSGGYPSSVGL-----AV 277 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 NV S A V GA G ++ +++G + + +++ Sbjct: 278 FNVSSTAQV------GALLPVNGGVIE----RVVTVTGPGIEKQGNYNVPIGTPIRFILD 327 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 + + +I GG + + + G V+V+ Sbjct: 328 QLG-----FRGSAQHIILGGPMMGSCISS--LDVPITK----------GCGGVLVLTE-R 369 Query: 328 DIIKAIWRLSVFYKHESCGQCT--------PCREG 354 D+ R S SCG C PC+ G Sbjct: 370 DVQSEASRTSHPCI--SCGACVEACPMHLNPCQLG 402 >gi|126698731|ref|YP_001087628.1| electron transport complex protein [Clostridium difficile 630] gi|254974671|ref|ZP_05271143.1| electron transport complex protein [Clostridium difficile QCD-66c26] gi|255092059|ref|ZP_05321537.1| electron transport complex protein [Clostridium difficile CIP 107932] gi|255100151|ref|ZP_05329128.1| electron transport complex protein [Clostridium difficile QCD-63q42] gi|255306041|ref|ZP_05350213.1| electron transport complex protein [Clostridium difficile ATCC 43255] gi|255313796|ref|ZP_05355379.1| electron transport complex protein [Clostridium difficile QCD-76w55] gi|255516477|ref|ZP_05384153.1| electron transport complex protein [Clostridium difficile QCD-97b34] gi|255649577|ref|ZP_05396479.1| electron transport complex protein [Clostridium difficile QCD-37x79] gi|260682741|ref|YP_003214026.1| electron transport complex protein [Clostridium difficile CD196] gi|260686339|ref|YP_003217472.1| electron transport complex protein [Clostridium difficile R20291] gi|306519703|ref|ZP_07406050.1| electron transport complex protein [Clostridium difficile QCD-32g58] gi|115250168|emb|CAJ67989.1| Electron transport complex protein [Clostridium difficile] gi|260208904|emb|CBA61888.1| electron transport complex protein [Clostridium difficile CD196] gi|260212355|emb|CBE03164.1| electron transport complex protein [Clostridium difficile R20291] Length = 445 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 68/379 (17%), Positives = 125/379 (32%), Gaps = 65/379 (17%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ I+ +K +G+ G GGA F +K S P ++ +++N E EP D Sbjct: 118 DLSKEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAE---VVILNGAECEPYLTADHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M P ++ G + FI + E++Q N Sbjct: 175 LMVENPEDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQ--------------NVAKD 220 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 Y +I V Y G E L+ + GK+ P P A V+NV + A Sbjct: 221 YS-EIEVVGLQVKYPQGAEKQLIYACTGKE-VPSGGLPIAAGA-------VVDNVATAAQ 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + ++ G T + + P + + E+IE+ CGG + Sbjct: 272 IAKSIKTGMPLVERI-------TTITGSC--IKEPKNLITKVGTLVSEIIEQ-CGGFKED 321 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 VI GG + E+ + G++ ++ +D I Sbjct: 322 KKIGK-VIMGGPMMGI------------AQYTTEIATNKGSSGILCLDEEESRTPDIQN- 367 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT---ICAL 393 C +C C + ++ + + + + IE + IC Sbjct: 368 --------CLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAEYHRAMDCIECGSCSFICP- 418 Query: 394 GDAAAWPIQGLIKNFRPLI 412 A P+ I++ + I Sbjct: 419 ---ARRPLLQSIRSAKREI 434 >gi|121996875|ref|YP_001001662.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588280|gb|ABM60860.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 448 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 57/320 (17%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ ++ +G+ G+GGA F T +K+ LVVN E EP D Sbjct: 125 ALSGEELVEAIRDAGIVGQGGASFPTHLKF---AVPEGYTVDTLVVNGCECEPFLSADHR 181 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M ++I+G +A A+GA A I V + + G ++ Sbjct: 182 LMVEATDSIIDGVRLAMRAVGAPEAVIGVEDNKPDAV--------AALQAAVAGEDA--- 230 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I V Y G E L+++L ++ P +G VNN+ ++A Sbjct: 231 ----IRVVQLKSKYPQGSEKMLIKALLDREV---PSGGLPYEIG-----AVVNNIGTMAQ 278 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + +L RG G V P + L+E+ Sbjct: 279 LGYLLPRGEGLIERVITVAGPG---------VERPGNYRVPVGTPLRYLLEEVG----FE 325 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D+ +I GG + + G + V+V+ Sbjct: 326 GDDPSRIILGGPMMG--NTVAFLDVPITK----------GVSGVLVLPEG------AGDE 367 Query: 337 SVFYKHESCGQCTPCREGTG 356 S + C +C C E Sbjct: 368 SEQPPTQPCIRCGRCVEVCP 387 >gi|262393720|ref|YP_003285574.1| electron transport complex protein RnfC [Vibrio sp. Ex25] gi|262337314|gb|ACY51109.1| electron transport complex protein RnfC [Vibrio sp. Ex25] Length = 916 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 124/347 (35%), Gaps = 66/347 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QETPDALIDIIRLAGISGMGGAGFPTAKK----IQSGFARTEILIVNAAECEPYITSDDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ LI+G I + I + ++L+AA Sbjct: 186 LMQEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 230 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGAIPADIGI-----LVQNVGSLYS 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G P V + L+++ Sbjct: 282 IKRAIIDGEPMIK----------RVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L + V + + I+ R Sbjct: 329 ADKKLQRLIMGGPMMGF---------------------TLPHSQVPITKTANCILAPTRR 367 Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 ++HE C +C+ C E ++ + ++ A+ E D L E+ Sbjct: 368 EISPHQHEMECIRCSQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412 >gi|150021446|ref|YP_001306800.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho melanesiensis BI429] gi|149793967|gb|ABR31415.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho melanesiensis BI429] Length = 438 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 63/359 (17%), Positives = 124/359 (34%), Gaps = 71/359 (19%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + +++ +K +G+ G GGA F T +K + D LV+N E EP D +M Sbjct: 120 SPEELVDIIKRAGIVGLGGAMFPTHVKLTPPKDKKID---TLVINGAECEPYLTIDHRMM 176 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + ++ G I +G A I + + + L N G Sbjct: 177 LEKYEEILIGIEIVKKILGIEKAIIGIEDNKLDAID--------------LLENKWKG-- 220 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + V Y G E L+ + + PR K P +VG+ V NV ++ + Sbjct: 221 -KVDVKALKTKYPQGAEKQLIYA-TTNRKVPRGK--LPMDVGV-----VVLNVSTLFAIK 271 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 + G + +++G +N P + +IE+ G++ Sbjct: 272 EAVIDG----------KPLIERGLTVTGEAINKPGNWWVRIGTPISWVIERLGEGLKSEA 321 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 +N+ V+ GG + +P + ++ G + + + Sbjct: 322 ENVK-VLMGGPMMG-IPINNIDTPLV-----------KGNNGITTI------------IP 356 Query: 338 VFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIEGRT---IC 391 K C +C+ C ++ +++ L G ++ + + IE + IC Sbjct: 357 KEQKSTFCIRCSYCVNVCPMGLQPYLLDLL--GKKKRYDEAAKIGLLDCIECGSCTYIC 413 >gi|282601058|ref|ZP_05980581.2| Na(+)-translocating NADH-quinone reductase, A subunit [Subdoligranulum variabile DSM 15176] gi|282570492|gb|EFB76027.1| Na(+)-translocating NADH-quinone reductase, A subunit [Subdoligranulum variabile DSM 15176] Length = 456 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 71/368 (19%), Positives = 126/368 (34%), Gaps = 69/368 (18%) Query: 23 SMSRGHWDNVDKI----LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 ++ VD + ++ ++A GL G GGAGF T + K+ +D Sbjct: 110 AIKTDGQQTVDPACVPPTVTDKASLLAAIQACGLVGVGGAGFPTHV------KLAADTVD 163 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 L++NA E EP D M T+I G I + + + Sbjct: 164 TLLINAAECEPYLTTDCREMLECSDTIISGIAAVMKYCNIPNCIIGIERNKPECIDQM-- 221 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ---PRLKPPF 195 + + G + V Y G E L+E+ G++ P K Sbjct: 222 ---------YSLTRNMSG----VSVKPLPTRYPQGAEKTLVETCTGREVPQVGPSGKAGL 268 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTV 254 PA+VG + NV S++ + L+ G TK ++ G + P V Sbjct: 269 PADVG-----CIIMNVTSVSTLGKYLKTGMPLT----------TKRVTVEGDAIAKPQNV 313 Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314 E + + ++IE CGGI+ + + G P+ D+ LK+ Sbjct: 314 EVPIGTLYRDVIE-ACGGIKPDVELGKIIFGGPMMGGAAPSA-------DFPVLKQ---- 361 Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 ++ ++ D+ +A +C +C C + + + +V R+ Sbjct: 362 -NNGLLLFSKKAADLPEA----------SACIRCGRCIDACPMGLEPV--VVAEAFNNRD 408 Query: 375 IDLLYEVS 382 D L Sbjct: 409 FDALKARC 416 >gi|255655136|ref|ZP_05400545.1| electron transport complex protein [Clostridium difficile QCD-23m63] gi|296451124|ref|ZP_06892865.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium difficile NAP08] gi|296880524|ref|ZP_06904486.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium difficile NAP07] gi|296259945|gb|EFH06799.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium difficile NAP08] gi|296428478|gb|EFH14363.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium difficile NAP07] Length = 445 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 67/379 (17%), Positives = 125/379 (32%), Gaps = 65/379 (17%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + ++ I+ +K +G+ G GGA F +K S P ++ +++N E EP D Sbjct: 118 DLSKEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAE---VVILNGAECEPYLTADHR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M P ++ G + FI + E++Q N Sbjct: 175 LMVENPEDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQ--------------NVAKD 220 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 Y +I V Y G E L+ + GK+ P P A V+NV + A Sbjct: 221 YS-EIEVVGLQVKYPQGAEKQLIYACTGKE-VPSGGLPIAAGA-------VVDNVATAAQ 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + ++ G T + + P + + E+IE+ CGG + Sbjct: 272 IAKSIKTGMPLVERI-------TTVTGSC--IKEPKNLITKVGTLVSEIIEQ-CGGFKED 321 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 VI GG + E+ + G++ ++ +D + Sbjct: 322 KKIGK-VIMGGPMMGI------------AQYTTEIATNKGSSGILCLDEEESRTPDVQN- 367 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT---ICAL 393 C +C C + ++ + + + + IE + IC Sbjct: 368 --------CLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAEYHRAMDCIECGSCSFICP- 418 Query: 394 GDAAAWPIQGLIKNFRPLI 412 A P+ I++ + I Sbjct: 419 ---ARRPLLQSIRSAKREI 434 >gi|15643016|ref|NP_228058.1| electron transport complex protein, putative [Thermotoga maritima MSB8] gi|4980743|gb|AAD35335.1|AE001708_3 electron transport complex protein, putative [Thermotoga maritima MSB8] Length = 451 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 111/324 (34%), Gaps = 65/324 (20%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 ++ I+ +K +G+ G GGA F T +K S P+ D L+VN E EP D + Sbjct: 133 MSKEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLIVNGAECEPVLTIDHRL 189 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M +++G +I +G A + V + +L+ GY Sbjct: 190 MLERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GY 235 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 VD V Y G E L+ ++ G + PR P +VG+ V NV + V Sbjct: 236 PVD--VALLRTKYPQGAEKQLIYAITG-RMVPRGG--LPMDVGV-----VVQNVGTCVAV 285 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 + G + ++SG V + + ++I +CGGI Sbjct: 286 KEAVVDGKPLV----------ERGMTVSGDAVKNQKNLIVRIGTPVKDVI-DYCGGIDEN 334 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + VI GG + + + GT+ + Sbjct: 335 TER---VILGGPMMGI--SITNLDIPV----------MKGTSGITAFLPKKS-------- 371 Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360 + C +C+ C + ++ Sbjct: 372 ---RPQKPCIRCSECVQVCPMNLQ 392 >gi|225027273|ref|ZP_03716465.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353] gi|224955426|gb|EEG36635.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353] Length = 437 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 92/269 (34%), Gaps = 43/269 (15%) Query: 27 GHWDNV--DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 G ++ V + EK + IIN VK +G+ G GGAGF T +K S ++ +++NA Sbjct: 103 GEYETVSFQPVTEKTNEAIINAVKEAGIVGLGGAGFPTHVKLS---PKEPEKIDTIIINA 159 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 E EP D M P LI G I I + L Sbjct: 160 AECEPYITADYRCMMEIPEQLISGLNIMLSLFPKAKGVIGIEDNKPEAIAKLTEMCKN-- 217 Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 + I V Y G E +L+ ++ G+ + PA+ G Sbjct: 218 -------------ESRIEVAALKTKYPQGAERSLIFAVTGRAINSSM---LPADAG---- 257 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFD 263 V+NV + + + G + ++ +++G + P + Sbjct: 258 -CIVDNVATAIAIHEAITLGKPLF----------ERVVTVTGDAIKNPGNFKVKNGTNAA 306 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 EL+E G VI GG + Sbjct: 307 ELVEAAGG----FKSQPEKVISGGPMMGM 331 >gi|325303370|tpg|DAA34498.1| TPA_inf: NADH dehydrogenase I subunit F [Amblyomma variegatum] Length = 122 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 53/76 (69%) Query: 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61 L D+DRIF NLYG L +MSRG W +I+ KG DWII+E+K SGLRGRGGAGF Sbjct: 47 LKDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGPDWIIDEIKKSGLRGRGGAGFP 106 Query: 62 TGMKWSFMPKVCSDRP 77 +G+KWSFM K RP Sbjct: 107 SGLKWSFMNKPSDGRP 122 >gi|212695714|ref|ZP_03303842.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM 7454] gi|212677387|gb|EEB36994.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM 7454] Length = 443 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 117/353 (33%), Gaps = 64/353 (18%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 + ++ I+ +K +GL G GGA F +K+S + +++N E EP Sbjct: 120 KDVTNLTKEKIVEAMKENGLVGMGGAAFPAHIKYS-----PNKAVDTVIINGAECEPYVT 174 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D I++ +P +++ + A+ A I + E ++ A+ + N Sbjct: 175 CDDYILKTKPEIIVDALELLVKAVDAKKGIIAIEDNKQEAIEKVRKAIAD--------KN 226 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 S + + Y G+E ++ ++ + P P +VG+ V+NV Sbjct: 227 SP-----KLELATMVTKYPQGDEKRIINAVL-HREVP--SGGLPMDVGV-----IVSNVS 273 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 S V + G + G + P + +F+++IE+ G Sbjct: 274 SANAVYEAVYYGKPLIERYMTVTGHG---------IKNPSNFLVRLGTSFEDMIEEAGGM 324 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 VI GG + + + ++V+++ Sbjct: 325 TEDAGK----VINGGPMMGIAQPNINQPVE------------KASNCILVLNKEESKAPV 368 Query: 333 IWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGI--AQKREIDLLYEV 381 C +C C M ++ + + +++ +L + Sbjct: 369 T---------NPCIRCAKCVNVCPVGLMPLLIHKFSLKEKFDKAQDLHILDCI 412 >gi|269120526|ref|YP_003308703.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sebaldella termitidis ATCC 33386] gi|268614404|gb|ACZ08772.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sebaldella termitidis ATCC 33386] Length = 444 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 71/327 (21%), Positives = 118/327 (36%), Gaps = 64/327 (19%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K + +VN E EP D+ +MR + + LI+G I + + A Sbjct: 20 FPTHLKMTK-------EVGTFIVNGAECEPLLEVDKFLMREKTYELIKGMEIIAGNLKAA 72 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 + ++ ++ E + L + E D ++ + Y G+E ++ Sbjct: 73 RVVLGLKKKYKVEIKKLSETIKEL--------------DSNVELFLMDNFYPAGDEQIMV 118 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + + GK P P + T V+NV ++ V + E Sbjct: 119 KDITGKS-IPAGGIPLDVD-------TVVSNVGTVINVYEAIE-----------EKPVTK 159 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K S+ G VN P +E + +F+E I++ G + AVI GG M Sbjct: 160 KYVSVLGEVNNPVMLEVPIGTSFEECIKRAGGVKIKNY----AVIEGGP---------MM 206 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM- 358 G I+ D L E T A+I++ +IK R +ES C CR T Sbjct: 207 GKIVHRDELAEKAVIKTTGALIILPEDHYVIKRKERPEAHILNESRAACIQCRMCTDMCP 266 Query: 359 ----------MRVMERLVKGIAQKREI 375 RVM + G + + Sbjct: 267 RYLIGHKLRPHRVMRAMGMGEQDEEIL 293 >gi|237731407|ref|ZP_04561888.1| electron transport complex protein RnfC [Citrobacter sp. 30_2] gi|226906946|gb|EEH92864.1| electron transport complex protein RnfC [Citrobacter sp. 30_2] Length = 564 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + R+ +I + G+ G GGAGF TG+K + Sbjct: 110 IDADGEDRWIERDGWTDYR---SHSREELIARIHQYGVAGLGGAGFPTGVKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + + + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILLGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + + DI + Y G L + L GK+ Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + + + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDG----------EPITERVVTLTGEAVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+ VI GG + Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +V + + + + + + C +C+ C + + + + KG Sbjct: 353 -------VVKITNCLLAPSASEMGETPEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|328947363|ref|YP_004364700.1| electron transport complex, RnfABCDGE type, C subunit [Treponema succinifaciens DSM 2489] gi|328447687|gb|AEB13403.1| electron transport complex, RnfABCDGE type, C subunit [Treponema succinifaciens DSM 2489] Length = 449 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 106/320 (33%), Gaps = 59/320 (18%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 G++ ++ +K +G+ G GGA F +K + D Y++VNA E EP D M Sbjct: 119 GKEKVLERIKDAGIVGMGGASFPAHVKLNPPEDKEID---YVLVNAAECEPYLTCDERTM 175 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 P LI+G I +GA I + + SL+ + + GY Sbjct: 176 IETPEKLIDGLAIILNLVGA-AGIIALEDNKAYIKPSLEKII------------VEKGYA 222 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI V Y G E ++ S G + PA+ G+ ++NV ++ + Sbjct: 223 DDIRVMLVKTKYPQGSEKFIVSSCLGVEI---PSGKLPADAGV-----IISNVGTVCAIS 274 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 R G E + L G V PC + + +L + + Sbjct: 275 DAFRLGKPLI-----ERS----LTISGGAVENPCNLRVPVGTMISDLSPEF---FSLKEN 322 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD-RSTDIIKAIWRLS 337 + + +I GG + GT+ + + T ++ Sbjct: 323 SAVKIISGGPMMGFTMPDMNFPV------------AKGTSGITFLTKDETYLVD------ 364 Query: 338 VFYKHESCGQCTPCREGTGW 357 E C C C Sbjct: 365 ----EEQCIGCGMCVSVCAM 380 >gi|120553868|ref|YP_958219.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter aquaeolei VT8] gi|120323717|gb|ABM18032.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter aquaeolei VT8] Length = 609 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 107/323 (33%), Gaps = 64/323 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + R+ ++ ++ +G+ G GGAGF T +K D L++N E EP D Sbjct: 121 QLDREAVLQRIREAGISGMGGAGFPTDIKLRPPRDRKVD---TLILNGAECEPYITADDM 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 MR + ++ G + ++ + + + +++ AV Sbjct: 178 TMREQAAEVVAGLKVMAWILRPSRCVVGIEDNKPEAIAAMRKAVAGTQ------------ 225 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 I + Y G E L++ L G++ PA++G+ N+ + Sbjct: 226 ----IEIAVVPTKYPSGGEKQLIQILTGQEV---PSGGIPADIGV-----MCQNIGTAVA 273 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275 V + G +++ +++G V P E + L+E Sbjct: 274 VGRAVFEG----------KPLISRVVTVTGEAVREPGNFEVLIGTPIHHLLETAG----M 319 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA-IW 334 + L +I GG + L T +V V+ + +I A Sbjct: 320 AQERLERLILGGPMMGY---------------------TLTTDSVPVVKTTNCVIAATAA 358 Query: 335 RLSVFYKHESCGQCTPCREGTGW 357 L + C +C C E Sbjct: 359 ELPAPPPEQPCIRCGQCAEACPM 381 >gi|257466640|ref|ZP_05630951.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] gi|315917794|ref|ZP_07914034.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] gi|313691669|gb|EFS28504.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] Length = 436 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 130/384 (33%), Gaps = 71/384 (18%) Query: 29 WDNVDKILEKGRDWI---INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI + + ++ G+ G GGA F T +K + D L++N Sbjct: 107 WAELSKIENWETAEVKDLLAMIREKGIVGIGGASFPTHVKLNPPADTKID---TLLLNGA 163 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P ++IEG I +G A I + +++ A + Sbjct: 164 ECEPYLNSDNRLMLENPSSIIEGVKIIKKILGVSTAIIGIEENKPEAIANMKKAAE---- 219 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++++ + P K P++VG+ Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVL-NREVPSGK--LPSSVGV---- 260 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + L G K+ ++SG + P V ++ F Sbjct: 261 -VVQNTGTAAAIYEGLVHGTPLI----------EKVVTVSGKAIATPKNVRIAIGTPFSY 309 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L+ CG R D L + GG + A A + + + + Sbjct: 310 LL-DACGVDREKVDKL---VMGGPMMGM--AQFSEDAPVIKGT---------SGLLALTT 354 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 T+ YK ++C C C + + RL + + Y + Sbjct: 355 EETNP----------YKPKACIGCGKCVSVCPMSLEPVMFARLAAFQQWEGLQN--YHLM 402 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 403 DCIECGS-CAFICPANRPLTEAIK 425 >gi|331001661|ref|ZP_08325184.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413382|gb|EGG92749.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon 107 str. F0167] Length = 448 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 66/363 (18%), Positives = 116/363 (31%), Gaps = 83/363 (22%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + + + + +D I VK +G+ G GGAGF T +K + D +Y+ Sbjct: 104 KEYNAIEGFGEKRDYIRLSKDKIRKIVKDAGIVGLGGAGFPTHVK---ISPKNEDEINYI 160 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +VN E EP D +M EP +IEG I I + A+ Sbjct: 161 IVNGAECEPYLTSDYRLMMEEPKKIIEGLKIILQLFPNATGIIGIENNKP-------KAI 213 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 ++ A + I V Y G E +L+ + +K L PA+VG Sbjct: 214 EKLKAFAQ--------NEPKIEVVELYTKYPQGGERSLIYACTKRKLNSSL---LPADVG 262 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMS 259 V+NV+++ + + ++ +++G + P Sbjct: 263 -----CIVDNVDTVVSIYNAVAESTPLIR----------RILTVTGDAITTPQNFNVRTG 307 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 + ELIE G + ++ GG +G A Sbjct: 308 TNYQELIEAAGG----FKEEPRKILSGGP-------------------------MMGQA- 337 Query: 320 VIVMDRSTDIIKAIWRLSVFYKHE-------SCGQCTPCREGTG-------WMMRVMERL 365 + + KA ++ F E C +C C + M + + Sbjct: 338 --LFTLDIPVTKASSSITTFLHDEVEENPETPCIKCGRCIDVCPSYLVPVLMMEKALNDD 395 Query: 366 VKG 368 +G Sbjct: 396 TEG 398 >gi|260779357|ref|ZP_05888249.1| electron transport complex protein RnfC [Vibrio coralliilyticus ATCC BAA-450] gi|260605521|gb|EEX31816.1| electron transport complex protein RnfC [Vibrio coralliilyticus ATCC BAA-450] Length = 923 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 111/322 (34%), Gaps = 64/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QRTPDELIEIIRQAGVSGMGGAGFPTAKK----IQAGLARTEILIVNAAECEPYITADDM 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ +I+G I + I + + ++L+ A + Sbjct: 186 LMQEHADEVIKGIEIVEHILNPKLTIIGIEDNKPQAIKALEQAAEH-------------- 231 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 DI++ Y G E L++ L K+ PA++GL V NV S+ Sbjct: 232 --KDIVIRVIPTKYPSGGEKQLIKILTNKEVPAN---SIPADIGL-----LVQNVGSLQA 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G P V+ + L+++ Sbjct: 282 IKRAVCDGEPLVD----------RIVTLTGDTFKQPRNVKALIGTPVQSLLDEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L A V + + I+ + Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHANVPITKTANCILAPTRK 367 Query: 336 LSVFYKHE-SCGQCTPCREGTG 356 ++E +C +C C E Sbjct: 368 EISPNQYEMACIRCGQCAEACP 389 >gi|224369472|ref|YP_002603636.1| RnfC1 [Desulfobacterium autotrophicum HRM2] gi|223692189|gb|ACN15472.1| RnfC1 [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 131/359 (36%), Gaps = 60/359 (16%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + I + D I + A+G+ G GGA F T +K + L+VN E EP Sbjct: 131 LSTIPDYSPDEIARLIHAAGIVGLGGAAFPTHVK---VMPNDKRLIDSLLVNGCECEPYL 187 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +M+ PH ++ G ++A A+ A FI + E+L+ A Sbjct: 188 TCDYRLMKEAPHAIVAGALLAGRAVSAKEIFICIEDNKPEAIEALELATRNT-------- 239 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + V Y G E L++++ P++VG+ ++NV Sbjct: 240 --------VVQVAVVRTKYPQGSEKQLVKAVLNLDV---PLGGLPSDVGV-----ALSNV 283 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHC 270 ++A V + + ++ S++ G + P + + I+ ELI C Sbjct: 284 GTMAAVARAVIKKGPLTH----------RIVSVTGGGIVTPKNIFTPIGISMGELI-DFC 332 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL-----KEMGSGLGTAAV----- 320 GG+ ++ +I GG + + G+ E SG TA V Sbjct: 333 GGLT---EDAARIIAGGPMMGFAFSDLTTPVTKGTSGITILTHAETASGEETACVRCGRC 389 Query: 321 ---IVMDRSTDIIKAIWR-----LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371 M+ + R L+ Y +C +C C +++++ + G AQ Sbjct: 390 VEACPMNLVPTRLAMAARYKNTALARQYNINACFECGSCTYVCPANIKLVQLIRTGKAQ 448 >gi|255505118|ref|ZP_05344567.3| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella formatexigens DSM 14469] gi|255269103|gb|EET62308.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella formatexigens DSM 14469] Length = 463 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 102/329 (31%), Gaps = 60/329 (18%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + + I++ ++ +G+ G GGAGF T +K MPK D +++VN E Sbjct: 132 GLGQYRDYTKMSKQEILDAIREAGIVGLGGAGFPTHVK--LMPKNP-DAIDHIIVNGAEC 188 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +M P ++ G + I V ++LQ V Sbjct: 189 EPYLTSDYRMMIENPEQIVGGLKVMLQLFDNAKGVIAVEANKPTGIKNLQELVKN----- 243 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + I V Y G E L+ ++ G+K PA+ G Sbjct: 244 ----------EPRIEVVPLKTKYPQGAERNLIYAVTGRKIN---STKLPADAG-----CI 285 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267 V+NV+++ + + G +N P + F EL E Sbjct: 286 VDNVDTVIAIHMAVCEKTPLMRRIVTVTGSG---------INEPKNYNVKIGTCFAELAE 336 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327 G + + VI GG + + +A +M Sbjct: 337 ASGG----LKEGVKKVIAGGPMMGMSIPS--LDVPIVKTS---------SALTCLMQDD- 380 Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ +C +C C + Sbjct: 381 ---------VERFEETACIRCGRCVQVCP 400 >gi|302389136|ref|YP_003824957.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermosediminibacter oceani DSM 16646] gi|302199764|gb|ADL07334.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermosediminibacter oceani DSM 16646] Length = 441 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 126/339 (37%), Gaps = 62/339 (18%) Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102 II VK +G+ G GGAGF +K + + ++ N E EP ++ +++H P Sbjct: 7 IIEAVKDAGVVGAGGAGFPAHIKLNA-------KCEVVIANMAECEPLLFTNQALIQHHP 59 Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162 +++G IA A GA I ++ ++ R+SL+ + GY +I+ Sbjct: 60 DEVLQGLQIAMQATGAKKGVIALKKKYEACRKSLEGKI---------------GYYENIV 104 Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 +H Y G+E +++ + K+ P P++VG V+NVE++ + R Sbjct: 105 IHELEDFYPAGDEHVMVKEVL-KRTIPMSG--IPSDVG-----AVVHNVETLYNIKRAYR 156 Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282 G K +++G V +P V+ + + F EL++ G + + Sbjct: 157 DG----------KPVTEKFVTVAGAVRHPLVVKVPIGLRFSELLDLAGGPAVKDYILVHG 206 Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 GS V L + A + R + + R Sbjct: 207 GPMMGSEV-----DAGDTVTKTTSAL----LVIPDGAFPHISRRARMEVLLKR-----AK 252 Query: 343 ESCGQCTPCREGTGWM--------MRVMERLVKGIAQKR 373 +C QC C + R+M + G+ Sbjct: 253 AACCQCRICTDMCPRYLLGHSLEPHRIMRTVSYGLPDTE 291 >gi|42526350|ref|NP_971448.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema denticola ATCC 35405] gi|41816462|gb|AAS11329.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema denticola ATCC 35405] Length = 480 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 64/355 (18%), Positives = 118/355 (33%), Gaps = 50/355 (14%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 ++ + V+ +G+ G GGA F T +K S P + Y++ N E EP C D + Sbjct: 119 TKEEALKRVRDAGITGMGGASFPTHVKLSPPPDAKIE---YVIANGAECEPYLCTDAATI 175 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + ++++G I +GA I + L+ A+ + A N Sbjct: 176 FSDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKA------NPIAAGA 229 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI V Y G E L +++ + P PF +G + NV ++ + Sbjct: 230 YDISVQLCKTKYPQGGEKTLTDAVV-NREIPSGGLPF--QIG-----CVIQNVGTLKAIS 281 Query: 219 TILRRGASWYSGFGRENNRGTKLFSI-SGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 R G + +I G P V + +LI + Sbjct: 282 EAFRLGKPLID----------RALTIGGGACEKPLNVIAPIGTCVGDLI----PSVVSLK 327 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYD----------GLKEMGSGLGTA-AVIVMDRS 326 ++ +I GG + + L+E +G + V Sbjct: 328 PGVVKIISGGPMMGFAMKNADFPIQKNTSGVLFLTKEEISLEEESPCIGCGKCIDVCSCH 387 Query: 327 TDIIKAIWRLSVFYKHES-------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 + + L+ E+ C +C C +++++R+ G RE Sbjct: 388 LSPVLIVRALNAGNTEEAIRCGLLDCVECGTCAYTCPARIKLVQRVKIGKQIARE 442 >gi|291522098|emb|CBK80391.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus catus GD/7] Length = 442 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 116/351 (33%), Gaps = 63/351 (17%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDI 97 ++ I VK SGL G GGAGF +K + D+ YL +NA E EP D R+I Sbjct: 127 SKEEFIEAVKQSGLVGLGGAGFPAHIKLN-----PKDKIEYLCINAAECEPYITADVREI 181 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M + ++ G +G A I + + +Q K Sbjct: 182 MENH-ENVLYGISQVMKYVGIDKALIGIEDNKPEAIKLMQE---------------KTAQ 225 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++ V Y G E L+E G++ P P++VG V NV S + Sbjct: 226 MSNVEVVSLPSRYPQGAEKVLIEQCTGRQVPP---GKLPSDVG-----CIVMNVASAGFL 277 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276 L+ G TK ++ G + V + ++I CGG +G Sbjct: 278 GGYLKNGIPLT----------TKRVTVDGSAITEAKNVRVPIGAPIKDII-AFCGGYKGT 326 Query: 277 WDNLLAVIPGGSSVP----------------CLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 L I GG + L + ++ G + + Sbjct: 327 PAKL---ISGGPMMGTALMTDDFPVLKQNNAFLAFDEAEAKSLEPTACISCGRCVNACPM 383 Query: 321 IVMDRSTDIIKAIWRL--SVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 +M + R+ Y +C +C C ++++ + G Sbjct: 384 NLMPTKLEAATIYKRVDDLKKYSVMTCMECGCCAFVCPANRKLVQSMRIGK 434 >gi|310777823|ref|YP_003966156.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] gi|309747146|gb|ADO81808.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] Length = 436 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 136/387 (35%), Gaps = 77/387 (19%) Query: 29 WDNVDKI--LEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI LEK ++ ++ V+ G+ G GGA F T +K + V D L++N Sbjct: 107 WAELTKIQNLEKATKEELLAMVREKGIVGVGGACFPTHIKLNPPKDVAID---VLLLNGA 163 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M EPH ++EG I + +G A + + E + A + Sbjct: 164 ECEPYLNSDNRLMIEEPHKIVEGIKIINKILGISRAVVGIEDNKTEAIEKMTKACE---- 219 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I V Y G E L++++ + P+ VG+ Sbjct: 220 --------GTG----IEVAMLKTQYPQGGEKQLIKAVLDRDV---PSGGLPSAVGV---- 260 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + + L G K+ ++SG V P ++ + F E Sbjct: 261 -VVQNTGTAGAIYEGLVEG----------KPLIEKIVTVSGKAVERPSNLKVRIGTMFSE 309 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 ++ + G R D L + GG + A + GT+ ++ + Sbjct: 310 IL-DYAGTNRESMDKL---VMGGPMMGM--AQHTENVPV----------VKGTSGLLALT 353 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVS 382 + + YK +SC C C + + + +L + + + Sbjct: 354 KEE---------TNPYKPKSCILCGKCVKACPINLLPNMYAKLARFKQWEEMGKN--HLM 402 Query: 383 KNIEGRT---ICALGDAAAWPIQGLIK 406 IE + IC A P+ IK Sbjct: 403 DCIECGSCSYICP----ANRPLTEAIK 425 >gi|262381166|ref|ZP_06074304.1| electron transport complex protein [Bacteroides sp. 2_1_33B] gi|301311165|ref|ZP_07217093.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 20_3] gi|262296343|gb|EEY84273.1| electron transport complex protein [Bacteroides sp. 2_1_33B] gi|300830739|gb|EFK61381.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 20_3] Length = 443 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 66/364 (18%), Positives = 119/364 (32%), Gaps = 66/364 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + K I++++ ASG+ G GGA F T +K P ++ +++NA E EP Sbjct: 113 ETLVKECALSSKEIVDKIAASGIVGLGGATFPTQVKLMPPPGNKAEI---VIINAVECEP 169 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M + ++ G I A+ + A I + LQ L Sbjct: 170 YLTSDHSLMLEKGEQILVGVTILMKAVNVNKAVIGIENNKPDAIAHLQK----------L 219 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 N K I + Y G E L++++ ++ + P + G V Sbjct: 220 AVNYK-----GIEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV + V ++ + ++ +I+G V P M LIE Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTITGKAVANPSNFLVRMGTPISCLIEA 316 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 G +I GG + A + G++ V+++ + Sbjct: 317 AGGLPENTGK----IIGGGPMMG--KALISAEVPVCK----------GSSGVLLLTKEES 360 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + K I C +C C + + Q E+ ++ IE Sbjct: 361 VRKPIR---------DCIRCAKCVGVCPMGLNPTLLMNATEFQNWELAEKNYITDCIE-- 409 Query: 389 TICA 392 C Sbjct: 410 --CG 411 >gi|296102657|ref|YP_003612803.1| electron transport complex protein RnfC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057116|gb|ADF61854.1| electron transport complex protein RnfC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 607 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 70/398 (17%), Positives = 131/398 (32%), Gaps = 81/398 (20%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + R W + + R+ +I+ + G+ G GGAGF TG+K + D+ L Sbjct: 116 DRWIERDGWSDYR---ARRREALIDRIHQFGVAGLGGAGFPTGVKL----RGGGDKIQTL 168 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 ++NA E EP D +M+ ++EG I + + I + + L+A + Sbjct: 169 IINAAECEPYITADDRLMQDCAAQVVEGIRILAHVLQPREVLIGIEDNKPQAISMLRAVL 228 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 DI + Y G L + L GK+ +++G Sbjct: 229 AG---------------SHDISLRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 270 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259 + + NV + V + G ++ +++G V+ P V + Sbjct: 271 V-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGESVSRPGNVWARLG 315 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTA 318 L+E+ VI GG + LP + + L + +G Sbjct: 316 TPVRHLLEQAGFCPGSD----QMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSPTEMG-- 369 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREID 376 + + C +C+ C + + + + KG + Sbjct: 370 -------------------EEQEEKGCIRCSACADACPADLLPQQLYWYSKGQLH--DKA 408 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + ++ IE C A AW L++ FR Sbjct: 409 QAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|217967478|ref|YP_002352984.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus turgidum DSM 6724] gi|217336577|gb|ACK42370.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus turgidum DSM 6724] Length = 437 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 110/340 (32%), Gaps = 65/340 (19%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + I + ++ +G+ G GGA F T +K S P+ D +++N E EP D + Sbjct: 120 LSPEEIKSRIREAGIVGLGGAAFPTHVKISPPPEKKID---TVILNGAECEPYLTIDYRL 176 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M +P +IEG I + +G I + E L+ Sbjct: 177 MLEKPELIIEGLHILMYVLGVKRGIIGIEDNKKDAVEVLKK-----------------YA 219 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D DI + Y G E L++++ G + P P VNNV + + Sbjct: 220 DSDIEIVTLPTKYPQGSEKHLIKAVLG-REVPSGGLP-------MDVGVVVNNVGTAVAI 271 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 R G +RG + VN +E + +LIE G Sbjct: 272 AEHFRTGLPLI-------SRGVTVTG--EGVNSSKNLEVLIGTPVIKLIEYVGGFKGKPG 322 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L GG + A + GT+ V+V Sbjct: 323 KILF----GGPMMGV--AIYDLNTPI----------VKGTSGVVVFPEDK---------V 357 Query: 338 VFYKHESCGQCTPCREGTGW--MMRVMER-LVKGIAQKRE 374 +Y C +C C E M + R + KG + E Sbjct: 358 EYYDPIPCVRCGKCLEVCPMGLMPTTLARYVKKGKLVEAE 397 >gi|331083159|ref|ZP_08332275.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404548|gb|EGG84088.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium 6_1_63FAA] Length = 449 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 62/319 (19%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 ++ II ++ GL G GGAGF T K+ K L++NA E EP D +M Sbjct: 126 TQEEIIAGIRDGGLTGMGGAGFPTHKKYETDKK-----IDALLINAAECEPFLTCDYRLM 180 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + + G + A GA A++ + + L ++ Sbjct: 181 LEYSYAVANGMRLLLKASGAPKAYLCMEDNKPEAAKVLGKILENTK-------------- 226 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI V Y G E L++++ G++ PA G V+NV + Sbjct: 227 -DIEVKVLPTQYPQGGERQLIQAVLGREV---PMGGLPAEAG-----AIVSNVGTAKATA 277 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +L ++ +++G V P + + EL+E CGG+ + Sbjct: 278 DMLLGKTPLIR----------RIVTVTGCVKNPGNYLVPIGTSAKELVE-LCGGVTVKNN 326 Query: 279 NLLAVIPGGS-SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 VI GG + PC+ + + + Y T+ ++V+ S Sbjct: 327 R---VIAGGPMTGPCVASDWNGESELFYVT-------KNTSGILVLPDSQ---------- 366 Query: 338 VFYKHESCGQCTPCREGTG 356 Y+ + C +C C Sbjct: 367 --YEEQPCIRCAGCESVCP 383 >gi|146279225|ref|YP_001169383.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides ATCC 17025] gi|145557466|gb|ABP72078.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides ATCC 17025] Length = 519 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 92/253 (36%), Gaps = 38/253 (15%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I +V +G+ G GGA F + +K + + H LV+N E EP D +M Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRARYD---LHTLVINGAECEPYLTCDDRLM 190 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R + +G I + A+G + + ++Q D Sbjct: 191 RERAEEIADGIGIMARALGVRQIVVAIESNKAEAISAMQR--------------FDRALD 236 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + + V Y G E L++ L G++ R A++G+ V+N + V Sbjct: 237 LPMRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +R G S + RG + P V + E+I HCGG+ D Sbjct: 289 LAVRYGEPLLSRVVTVSGRG---------IRRPANVRVLIGTPVAEVI-AHCGGLTEEPD 338 Query: 279 NLLAVIPGGSSVP 291 LL GG + Sbjct: 339 RLLL---GGPMMG 348 >gi|170717802|ref|YP_001784865.1| electron transporter subunit RnfC [Haemophilus somnus 2336] gi|168825931|gb|ACA31302.1| electron transport complex, RnfABCDGE type, C subunit [Haemophilus somnus 2336] Length = 706 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 60/403 (14%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ L +R ++ L R+ +I+++ +G+ G GGA F T K + + Sbjct: 114 IEADGLEQWRNR---QPIEDYLTLSREQLIDKIYQAGIAGLGGAVFPTAAK----IRSAN 166 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 ++ L++N E EP D +MR +IEG I + + A I + Sbjct: 167 NKVKLLIINGAECEPYITCDDRLMRDYSEEIIEGIRILRYILRPEKAVIAIEDNKPEAIA 226 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+ ++ DI + Y G L++ L G + Sbjct: 227 VLRQSLHGAD---------------DIDIRVIPTKYPSGAAKQLIQILTGFEV---ASGQ 268 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ ++NV + + + ++ +++G + Sbjct: 269 RSSSIGI-----LMHNVGTAFAIKRAIINDEPLI----------ERVVTLTGDKIAQKGN 313 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 + ++ + +D+ V GG + + + L Sbjct: 314 FWVPLGTPISHVLTQVA----YQYDSRFPVFMGGPMMGFILPNLYAPVTKATNCLLAPDH 369 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +SC +C+ C + M + + + Sbjct: 370 F--------------------EYEPPATEQSCIRCSACSDACPVHLMPQQLYWFARAEDH 409 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 K+ + Y + + IE C L A+ LI+ FR Sbjct: 410 KKSEE--YALKECIE----CGLC---AYVCPSHIPLIQYFRQE 443 >gi|261339612|ref|ZP_05967470.1| electron transport complex protein RnfC [Enterobacter cancerogenus ATCC 35316] gi|288318434|gb|EFC57372.1| electron transport complex protein RnfC [Enterobacter cancerogenus ATCC 35316] Length = 678 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 69/404 (17%), Positives = 129/404 (31%), Gaps = 81/404 (20%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + + R W + + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IDADGEDRWIDRDGWSDYR---AQSREALIERIHQFGVAGLGGAGFPTGTKL----RGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ ++EG I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPRDVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 L+A + DI + Y G L + L GK+ Sbjct: 223 MLRAVLAG---------------SHDIGLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V+ P Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGESVSRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMG 312 V + L++ VI GG + LP + + L Sbjct: 310 VWARLGTPVRHLLDHAGFCPGSD----QMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSS 365 Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIA 370 + +G + + C +C+ C + + + + KG Sbjct: 366 TEMG---------------------EEQEEKGCIRCSACADACPADLLPQQLYWYSKGQL 404 Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A AW L++ FR Sbjct: 405 H--DKAKAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|325849927|ref|ZP_08170966.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479951|gb|EGC83034.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 438 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 117/353 (33%), Gaps = 64/353 (18%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 + ++ I+ +K +GL G GGA F +K+S + +++N E EP Sbjct: 115 KDVTNLTKEKIVEAMKENGLVGMGGAAFPAHIKYS-----PNKAVDTVIINGAECEPYVT 169 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D I++ +P +++ + A+ A I + E ++ A+ + N Sbjct: 170 CDDYILKTKPEIIVDALELLVKAVDAKKGIIAIEDNKQESIEKVRKAIAD--------KN 221 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 S + + Y G+E ++ ++ + P P +VG+ V+NV Sbjct: 222 SP-----KLELATMVTKYPQGDEKRIINAVL-HREVP--SGGLPMDVGV-----IVSNVS 268 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 S V + G + G + P + +F+++IE+ G Sbjct: 269 SANAVYEAVYYGKPLIERYMTVTGHG---------IKNPSNFLVRLGTSFEDMIEEAGGM 319 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 VI GG + + + ++V+++ Sbjct: 320 TEDAGK----VINGGPMMGIAQPNINQPVE------------KASNCILVLNKEESKAPV 363 Query: 333 IWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGI--AQKREIDLLYEV 381 C +C C M ++ + + +++ +L + Sbjct: 364 T---------NPCIRCAKCVNVCPVGLMPLLIHKFSLKEKFDKAQDLHILDCI 407 >gi|311279508|ref|YP_003941739.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae SCF1] gi|308748703|gb|ADO48455.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae SCF1] Length = 679 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 71/398 (17%), Positives = 125/398 (31%), Gaps = 81/398 (20%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 R W + K RD +I + G+ G GGAGF TG K + D+ L Sbjct: 116 DTWFERDGWSDWQ---SKTRDTLIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIDTL 168 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 ++NA E EP D +M+ ++EG I + + I + + ++A + Sbjct: 169 IINAAECEPYITADDRLMQDCAAQIVEGVRILAHILQPRQVLIGIEDNKPQAISMMRAVL 228 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 + + I + Y G L + L GK+ +++G Sbjct: 229 ADAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 270 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259 + + NV + V + G ++ +++G V P V + Sbjct: 271 V-----LMQNVGTAFAVKRAIVDGEPLT----------ERVVTLTGESVGRPGNVWARLG 315 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTA 318 L+ VI GG + LP + + L S +G Sbjct: 316 TPVQHLLADAGFCPSAE----QLVIMGGPLMGFTLPWLDVPVVKITNCLLAPSPSEMG-- 369 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREID 376 + C +C+ C + + + + KG + Sbjct: 370 -------------------EPQDEKGCIRCSACADACPADLLPQQLYWFSKGQQH--DKA 408 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + +S IE C A AW L++ FR Sbjct: 409 QTHNLSDCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|303240126|ref|ZP_07326647.1| electron transport complex, RnfABCDGE type, C subunit [Acetivibrio cellulolyticus CD2] gi|302592395|gb|EFL62122.1| electron transport complex, RnfABCDGE type, C subunit [Acetivibrio cellulolyticus CD2] Length = 439 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 70/374 (18%), Positives = 117/374 (31%), Gaps = 63/374 (16%) Query: 24 MSRGHWDNVDKILE----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 + VD ++ + I ++ SGL G GGAGF +K S + Sbjct: 99 IKTDGMQKVDASIKPPKYTNCEEFIGAIRKSGLVGLGGAGFPAHIKLS---PPQGKKIDT 155 Query: 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139 L+VNA E EP D + +++G I A+ I + + Sbjct: 156 LIVNAAECEPFITSDYREIIENSWNVMDGIDIVIEALKIKNVLIGIEDNKPEAIK----- 210 Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199 L S S I V Y G E L+ + G+K PA+V Sbjct: 211 -----EMTHLASKSD-----KINVVELKSRYPQGAEKMLIYATTGRKV---PSGKLPADV 257 Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESM 258 G+ V NV SI+ V ++ G K ++ G V P VE + Sbjct: 258 GV-----IVMNVNSISFVSEYIKTGMPLIK----------KRVTVDGSAVKNPSNVEVLI 302 Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM------- 311 + ++ E G V+ GG + + + L Sbjct: 303 GTSLSDVFEFTGG----FKVPPAKVLMGGPMMGIAQFSLETSVLKHTNALLAFDEKEAVL 358 Query: 312 ---------GSGLGTAAVIVMDRSTDIIKAIWRLSVF--YKHESCGQCTPCREGTGWMMR 360 G G + ++ + + Y C +C C ++ Sbjct: 359 PKSTACIRCGRCAGACPMNLLPLYLNNNSLKENIEELKKYHVSDCIECGSCSYSCPAKIQ 418 Query: 361 VMERLVKGIAQKRE 374 +++ + G AQ R+ Sbjct: 419 LVQSIRLGKAQLRQ 432 >gi|257456519|ref|ZP_05621715.1| electron transport complex, RnfABCDGE type, C subunit [Treponema vincentii ATCC 35580] gi|257446179|gb|EEV21226.1| electron transport complex, RnfABCDGE type, C subunit [Treponema vincentii ATCC 35580] Length = 424 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 109/351 (31%), Gaps = 50/351 (14%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 ++ + ++ +G+ G GGA F +K S D Y++ NA E EP C D M Sbjct: 85 TKEDALKRIREAGITGMGGASFPVHVKLSPPKDAKID---YILGNAAECEPYLCTDAATM 141 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H T+I+G I GA I + + A+ + N Sbjct: 142 YHSAETIIDGMAIIMHVTGADKGIIALEDNKTHLVPVFEKAIAKIKQ------NPVGPGA 195 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI V Y G E L ++ G + P PF VG V NV ++ + Sbjct: 196 YDISVELCKTKYPQGGEKNLTSAVVG-REIPSGGLPF--QVG-----CIVQNVGTMKAIS 247 Query: 219 TILRRGASWYSGFGRENNRGTKLFSI-SGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 R+G + +I G P + +LI + + Sbjct: 248 DAFRKGMPLID----------RPLTIGGGACENPINAIAPIGTCISDLIPE----VVRLK 293 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDG----------LKEMGSGLGTAAVIVMDRST 327 + +I GG + + G L E +G + Sbjct: 294 PGVTKIISGGPMMGFAMKSADFPVQKNTSGVLFLTREEVNLDEESPCIGCGKCVTHCSCQ 353 Query: 328 -DIIKAIWRLSVFYKHES-------CGQCTPCREGTGWMMRVMERLVKGIA 370 + I L E+ C +C C +++++R G Sbjct: 354 LSPVLMIRALKANKLDEAVRCGLMDCVECGICSYVCPARIKLVQRFKVGKQ 404 >gi|325473292|gb|EGC76487.1| hypothetical protein HMPREF9353_02282 [Treponema denticola F0402] Length = 438 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 64/355 (18%), Positives = 118/355 (33%), Gaps = 50/355 (14%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 ++ + V+ +G+ G GGA F T +K S P + Y++ N E EP C D + Sbjct: 77 TKEEALKRVRDAGITGMGGASFPTHVKLSPPPDAKIE---YVIANGAECEPYLCTDAATI 133 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + ++++G I +GA I + L+ A+ + A N Sbjct: 134 FSDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKA------NPIAAGA 187 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI V Y G E L +++ + P PF +G + NV ++ + Sbjct: 188 YDISVQLCKTKYPQGGEKTLTDAVV-NREIPSGGLPF--QIG-----CVIQNVGTLKAIS 239 Query: 219 TILRRGASWYSGFGRENNRGTKLFSI-SGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 R G + +I G P V + +LI + Sbjct: 240 EAFRLGKPLID----------RALTIGGGACEKPLNVIAPIGTCVGDLI----PSVVSLK 285 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYD----------GLKEMGSGLGTA-AVIVMDRS 326 ++ +I GG + + L+E +G + V Sbjct: 286 PGVVKIISGGPMMGFAMKNADFPIQKNTSGVLFLTKEEISLEEESPCIGCGKCIDVCSCH 345 Query: 327 TDIIKAIWRLSVFYKHES-------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 + + L+ E+ C +C C +++++R+ G RE Sbjct: 346 LSPVLIVRALNAGNTEEAIRCGLLDCVECGTCAYTCPARIKLVQRVKIGKQIARE 400 >gi|166031924|ref|ZP_02234753.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC 27755] gi|166028377|gb|EDR47134.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC 27755] Length = 439 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 111/330 (33%), Gaps = 64/330 (19%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 + + E ++ I+N + +G+ G GGAGF T +K S D+ Y++ N E E Sbjct: 110 YSTPKAVSEMSKEEILNAIGDAGIVGMGGAGFPTKVKLS---PKEPDKIDYIIANCAECE 166 Query: 89 PGTCKD-RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 P D R I+ H L+EG I V E L+ Sbjct: 167 PYITADYRQILEHG-EELVEGMKIILRLFDNAKGLFGVEDNKPDCIEKLKE--------- 216 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 L + + V Y G E L+ + G+ + PA+ G Sbjct: 217 -LTKDEP-----RMEVLKLQTKYPQGGERQLIYATTGRAINSSM---LPADAG-----CV 262 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V+NV +I+ + + +G ++ ++SG V+ P + + ELI Sbjct: 263 VDNVATISAIYRAVAKGEPSMD----------RIVTVSGDAVHEPGNFKAPFGMNQAELI 312 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 E GG + + +I GG + + + ++++ + Sbjct: 313 E-AAGGYKVDPEK---IISGGPMMGF--SMFTVDVPVTKTS----------SSILCFTKD 356 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 Y+ +C C C E Sbjct: 357 E---------VAQYEPTACINCGRCVEVCP 377 >gi|291549337|emb|CBL25599.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Ruminococcus torques L2-14] Length = 448 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 109/323 (33%), Gaps = 60/323 (18%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + + ++ +G+ G GGAGF T K +R +++N E EP R + Sbjct: 1 MDMKELSSILQQNGIVGAGGAGFPTYAKL-------DERAETIILNCAECEPLLRLHRQL 53 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 + +I+ + +GA I ++ + E+++A +G Sbjct: 54 LEKYAKEIIDTFHMIGETVGAKEVIIGIKKAYTATIEAVKAV---------------MGQ 98 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 ++ + Y G+E L+ GK +P P G+ V NVE++ V Sbjct: 99 YPEVRLGLLDEVYPAGDEVVLIYETTGKVVRP---GGLPIESGV-----AVFNVETVYNV 150 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277 Y + KL S+ V +P TV + +E++ G Sbjct: 151 ----------YRALNEKTPVEDKLVSVVAEVEHPITVRVPIGTPLEEVVALAGGVTTKD- 199 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR-- 335 GG + + G T A++V+ + II+ + Sbjct: 200 ---AVYFVGGPMMGNI-------------GTGAQPVTKTTNAILVLPKDHHIIQKKLKKN 243 Query: 336 -LSVFYKHESCGQCTPCREGTGW 357 + + C QCT C + Sbjct: 244 SIDMKRAAACCCQCTMCTDLCPR 266 >gi|257452980|ref|ZP_05618279.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 3_1_5R] gi|317059520|ref|ZP_07924005.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. 3_1_5R] gi|313685196|gb|EFS22031.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. 3_1_5R] Length = 436 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 131/384 (34%), Gaps = 71/384 (18%) Query: 29 WDNVDKILEKGRDWI---INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI + + ++ G+ G GGA F T +K + D L++N Sbjct: 107 WAELSKIENWETAEVKDLLAMIREKGIVGIGGASFPTHVKLNPPADTKID---TLLLNGA 163 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P ++IEG I +G A I + +++ A + Sbjct: 164 ECEPYLNSDNRLMLENPSSIIEGVKIIKKILGVSTAIIGIEENKPEAIANMKKAAE---- 219 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++++ + P K P++VG+ Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVL-NREVPSGK--LPSSVGV---- 260 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + L G K+ ++SG + P V ++ F Sbjct: 261 -VVQNTGTAAAIYEGLVHGTPLI----------EKVVTVSGKAIATPKNVRIAIGTPFSY 309 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L+ CG R D L + GG M A + G+ + + + Sbjct: 310 LL-DACGVDREKVDKL---VMGGP--------MMGMAQFSEEAPVIKGT---SGLLALTT 354 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 T+ YK ++C C C + + RL + + Y + Sbjct: 355 EETNP----------YKPKACIGCGKCVSVCPMSLEPVMFARLAAFQQWEGLQN--YHLM 402 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 403 DCIECGS-CAFICPANRPLTEAIK 425 >gi|313886233|ref|ZP_07819962.1| electron transport complex, RnfABCDGE type, C subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924304|gb|EFR35084.1| electron transport complex, RnfABCDGE type, C subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 450 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 65/374 (17%), Positives = 122/374 (32%), Gaps = 50/374 (13%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + G D + + + +E II+ + G+ G GGA F T +K S P + Sbjct: 100 VDGDEWEDYIDQTD--TLVTDIELDAKQIIDRIAEMGIVGMGGATFPTHVKLSPPPGQSA 157 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D Y+++NA E EP D +MR + ++ GC I A A I + Sbjct: 158 D---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMKAANAPRTLIGIENNKPDAIR 214 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ A + G I V Y G E L+++L K+ P Sbjct: 215 IMRDAAERAKEFLPEGQ--------SIAVVPLKKRYPQGGEKQLIDALIRKQVTSGALPI 266 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 V NV + + Y + ++ +++G + P Sbjct: 267 STG--------AIVQNVGTTFAI----------YEAVMKHKPLIERIITVTGRAIARPSN 308 Query: 254 VEESMSITFDELIEK-----------HCGGIRGGWDNLLAVIPG--GSSVPCLPAGQMRG 300 + + LI+ GG G + IP GSS + + Sbjct: 309 FKARIGTPMQTLIDAAGGYAEEPGKIIGGGPMMGRALVSTDIPVAKGSSGLLILTAKEST 368 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH---ESCGQCTPCREGTGW 357 +D ++ + + ++ + + I++ +H C +C C Sbjct: 369 RPEMHDCIRCGKCV--SVCPMGLNPAFLMRDTIYKDWESTEHNYIADCIECGSCSYTCPA 426 Query: 358 MMRVMERLVKGIAQ 371 +++ + G Sbjct: 427 GRPLLDYIRVGKQT 440 >gi|256840545|ref|ZP_05546053.1| electron transport complex [Parabacteroides sp. D13] gi|256737817|gb|EEU51143.1| electron transport complex [Parabacteroides sp. D13] Length = 443 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 66/364 (18%), Positives = 118/364 (32%), Gaps = 66/364 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + K I++++ ASG+ G GGA F T +K P ++ +++NA E EP Sbjct: 113 ETLVKECSLSSKEIVDKIAASGIVGLGGATFPTQVKLMPPPGNKAEI---VIINAVECEP 169 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M + ++ G I A+ + A I + LQ L Sbjct: 170 YLTSDHSLMLEKGEQILVGVTILMKAVNVNKAVIGIENNKPDAIAHLQK----------L 219 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 N K I + Y G E L++++ ++ + P + G V Sbjct: 220 AVNYK-----GIEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV + V ++ + ++ +I+G V P M LIE Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTITGKAVANPSNFLVRMGTPISCLIEA 316 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 G +I GG + A + G++ V+++ Sbjct: 317 AGGLPENTGK----IIGGGPMMG--KALISAEVPVCK----------GSSGVLLLTTEES 360 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + K I C +C C + + Q E+ ++ IE Sbjct: 361 VRKPIR---------DCIRCAKCVGVCPMGLNPTLLMNATEFQNWELAEKNYITDCIE-- 409 Query: 389 TICA 392 C Sbjct: 410 --CG 411 >gi|150007170|ref|YP_001301913.1| electron transport complex protein RnfC [Parabacteroides distasonis ATCC 8503] gi|255015216|ref|ZP_05287342.1| electron transport complex, protein RnfC [Bacteroides sp. 2_1_7] gi|298377595|ref|ZP_06987547.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 3_1_19] gi|149935594|gb|ABR42291.1| electron transport complex, protein RnfC [Parabacteroides distasonis ATCC 8503] gi|298265614|gb|EFI07275.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides sp. 3_1_19] Length = 443 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 66/364 (18%), Positives = 118/364 (32%), Gaps = 66/364 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + + K I++++ ASG+ G GGA F T +K P ++ +++NA E EP Sbjct: 113 ETLVKECTLSSKEIVDKIAASGIVGLGGATFPTQVKLMPPPGNKAEI---VIINAVECEP 169 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M + ++ G I A+ + A I + LQ L Sbjct: 170 YLTSDHSLMLEKGEQILVGVTILMKAVNVNKAVIGIENNKPDAIAHLQK----------L 219 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 N K I + Y G E L++++ ++ + P + G V Sbjct: 220 AVNYK-----GIEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV + V ++ + ++ +I+G V P M LIE Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTITGKAVANPSNFLVRMGTPISCLIEA 316 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 G +I GG + A + G++ V+++ Sbjct: 317 AGGLPENTGK----IIGGGPMMG--KALISAEVPVCK----------GSSGVLLLTTEES 360 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 + K I C +C C + + Q E+ ++ IE Sbjct: 361 VRKPIR---------DCIRCAKCVGVCPMGLNPTLLMNATEFQNWELAEKNYITDCIE-- 409 Query: 389 TICA 392 C Sbjct: 410 --CG 411 >gi|77164681|ref|YP_343206.1| electron transport complex protein RnfC [Nitrosococcus oceani ATCC 19707] gi|76882995|gb|ABA57676.1| Electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus oceani ATCC 19707] Length = 515 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 97/255 (38%), Gaps = 43/255 (16%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + N ++ +G+ G GGAGF T +K + P+ L++N E EP D +M Sbjct: 125 DPSHLRNLIRQAGIVGLGGAGFPTFIKLNPGPQPK---VKTLILNGAECEPYITCDEALM 181 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R +I+G I + A+ A+ I + + +L + + G Sbjct: 182 RERAEEIIQGAAIMAHALNAYHCLIGIEDDKPEA-------------CTVLAAAAAEG-- 226 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 I V Y G E L++ L G++ P ++G+ +NV + A V Sbjct: 227 --IEVVPIPTRYPAGGEKQLIKVLTGQEVPSNG---LPIDIGV-----VCHNVGTAAAVY 276 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 + RG S ++ +++G V +P +E + L+ + Sbjct: 277 RAIHRGEPLLS----------RIMTVAGKAVAHPGNLEVLLGTPIRHLLAQQGA----NI 322 Query: 278 DNLLAVIPGGSSVPC 292 ++ +I GG + Sbjct: 323 QSIDRLIMGGPMMGF 337 >gi|113461204|ref|YP_719273.1| electron transport complex protein RnfC [Haemophilus somnus 129PT] gi|112823247|gb|ABI25336.1| electron transport complex protein [Haemophilus somnus 129PT] Length = 659 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 60/403 (14%), Positives = 127/403 (31%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ L R ++ L R+ +I+++ +G+ G GGA F T K + + Sbjct: 114 IEADGLEQWRKR---HLIEDFLTLSREQLIDKIYQAGIAGLGGAVFPTAAK----IRSAN 166 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 ++ L++N E EP D +MR +IEG I + + A I + Sbjct: 167 NKVKLLIINGAECEPYITCDDRLMRDYSEEIIEGIRILRYILRPEKAVIAIEDNKPEAIA 226 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +L+ ++ DI + Y G L++ L G + Sbjct: 227 ALRQSLHGAN---------------DIDIRVIPTKYPSGAAKQLIQILTGVEV---ASGQ 268 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 +++G+ ++NV + + + ++ +++G + Sbjct: 269 RSSSMGI-----LMHNVGTAFAIKRAIIDDEPLI----------ERVVTLTGDKIAQKGN 313 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 + ++ + +D+ V GG + + + L Sbjct: 314 FWVPLGTPISHVLTQVA----YQYDSRFPVFMGGPMMGFILPNLYAPVTKATNCLLAPDH 369 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 +SC +C+ C + M + + + Sbjct: 370 F--------------------EYEPPATEQSCIRCSACSDACPVHLMPQQLYWFARAEDH 409 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 K+ + Y + + IE C L A+ LI+ FR Sbjct: 410 KKSEE--YALKECIE----CGLC---AYVCPSHIPLIQYFRQE 443 >gi|121997094|ref|YP_001001881.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588499|gb|ABM61079.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 506 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 66/332 (19%), Positives = 103/332 (31%), Gaps = 63/332 (18%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 + I V +G+ G GGA F +K L++N E EP Sbjct: 121 TAPARQIDPATIAARVGEAGIVGMGGAAFPAAVKLG-----AGQPVATLILNGGECEPYL 175 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D +MR +I+G + + A+GA I V +L+ A + L G Sbjct: 176 TCDDRLMRERAAGIIDGAQLMARALGAERTAIGVEDNKPEAIHALRRA-----SDALGGP 230 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 + V + G E L+ +L G++ ++G+ V+NV Sbjct: 231 D----------VVPVPSLWPQGSEKHLIYTLTGREV---PAGARAGDIGV-----VVHNV 272 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271 + V R G R G G V P E + + LIE+ G Sbjct: 273 GTAYAVHRAARHGRPL---ISRPVTVG------GGAVAEPGNFEAPLGLPLQALIEQAGG 323 Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331 L G P E GT VI + +T+I + Sbjct: 324 LREPPARVLAGGPMMGQVAPL-----------------EAAVAKGTNGVIALT-ATEIRE 365 Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363 A R C +C C + + + Sbjct: 366 AEGR--------PCIRCGRCVDACPMGLMPFD 389 >gi|289449574|ref|YP_003475793.1| putative electron transport complex protein RnfC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184121|gb|ADC90546.1| putative electron transport complex protein RnfC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 449 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 65/327 (19%), Positives = 110/327 (33%), Gaps = 45/327 (13%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 RD I ++ SGL G GGAGF T +K + LV+NA E EP D M Sbjct: 127 RDEFIAAIQQSGLVGLGGAGFPTHVKLRAPKDHPFEI---LVINAAECEPYLTVDYRAML 183 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 L+ G + + I L A+ S + + Sbjct: 184 DNTDNLLAGIAAVTKYLDIPRVVIGTEDNKKDAVTKLLQALR---------SEAGDAINA 234 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 D+ + Y G E L+ + G++ PANVG V NV S+A V Sbjct: 235 DVEIMALPSRYPQGAEKTLIYAATGRRV---PAGGLPANVG-----CVVMNVTSVAFVGD 286 Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 LR G + K ++ G + +P + + +++E G Sbjct: 287 YLRTGHPLVA----------KNITVDGDIIAHPQNIRAVIGTPIKDIVEFCGGLTGEPSK 336 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAV-IVMDRSTDIIKAI-WR 335 L+ G ++ L ++ + + + + +G T + + + R Sbjct: 337 ILMGGPMMGLAISSLDQPILKNNNGLLFFSERMVNNGPETDCIRCGRCSQHCPMNLLPKR 396 Query: 336 LSV---FYKHE--------SCGQCTPC 351 + F K+ +C +C C Sbjct: 397 IMDTVKFQKYAALSATGVMNCIECGSC 423 >gi|284047498|ref|YP_003397837.1| electron transport complex, RnfABCDGE type, C subunit [Acidaminococcus fermentans DSM 20731] gi|283951719|gb|ADB46522.1| electron transport complex, RnfABCDGE type, C subunit [Acidaminococcus fermentans DSM 20731] Length = 455 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 71/372 (19%), Positives = 125/372 (33%), Gaps = 58/372 (15%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D I ++ G+ G GGA F T +K+ PK +++N E EP D Sbjct: 120 EITPDLIRQVLREKGIAGMGGATFPTAVKY-APPKEGHCPIDTILLNGIECEPFVTADHR 178 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 + +I+G A GA I + E +Q V Sbjct: 179 TLLEYADEIIQGLKYFMLASGAAKGIIGIEDNKPDAIELMQKKVAG-------------- 224 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + +I V Y G E L+ + G+ R PA+VG+ V+NV + Sbjct: 225 -EANIEVCVCKEKYPQGSEKHLIYAATGRTVPDRG---LPADVGV-----IVDNVGTAVA 275 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 ++ Y ++ +ISG VN P + F + +EK GG++ Sbjct: 276 ACRAVKNNIPLY----------ERVVTISGDGVNKPGNYIVRLGTLFSDAVEKAAGGLK- 324 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 G + G M G ++ G++ +++ + + Sbjct: 325 -----------GDPGKIVAGGMMMGFAVNSLDYP---ITKGSSGLLIFNSKSP------- 363 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395 + + + + C C C + + E + Q + + IE + CA Sbjct: 364 FAQYVEPDPCVHCARCVDACPMKLEPTEIVQAVKKQNWDDAERFFCHACIECGS-CAFVC 422 Query: 396 AAAWPIQGLIKN 407 A P+ I+ Sbjct: 423 PAHIPLVQYIRM 434 >gi|222099416|ref|YP_002533984.1| Electron transport complex protein [Thermotoga neapolitana DSM 4359] gi|221571806|gb|ACM22618.1| Electron transport complex protein [Thermotoga neapolitana DSM 4359] Length = 435 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 112/324 (34%), Gaps = 65/324 (20%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 ++ I++ +K +G+ G GGA F T +K S P+ D L++N E EP D + Sbjct: 117 MSKEEILDVIKKAGVVGLGGAMFPTHVKLSPPPEKKID---TLIINGAECEPVLTIDHRM 173 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M +++G +I +G A + V + L+ GY Sbjct: 174 MLERAEDILQGILIMMKVLGVQKAVVGVENNKMDAYNHLKKVFK--------------GY 219 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 VD V Y G E L+ ++ ++ PR P +VG+ V NV + V Sbjct: 220 PVD--VALLKTKYPQGAEKQLIYAIT-RRKVPRGG--LPMDVGV-----VVQNVGTCVAV 269 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 + G + ++SG V P + + +++E +CGGI Sbjct: 270 KEAVVDGKPLV----------ERGMTVSGDAVRDPKNLIVRIGTPVKDVLE-YCGGIDER 318 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + VI GG + + GT+ + Sbjct: 319 TER---VILGGPMMGISITS--LDTPV----------MKGTSGITAFLPR---------- 353 Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360 + C +C+ C + ++ Sbjct: 354 -KPQSQKPCIRCSECVQVCPMNLQ 376 >gi|257462466|ref|ZP_05626878.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D12] gi|317060123|ref|ZP_07924608.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12] gi|313685799|gb|EFS22634.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12] Length = 436 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 131/384 (34%), Gaps = 71/384 (18%) Query: 29 WDNVDKILEKGRDWI---INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 W + KI + + ++ G+ G GGA F T +K + D L++N Sbjct: 107 WAELSKIENWETAEVKELLAMIREKGIVGIGGASFPTHVKLNPPADTKID---TLLLNGA 163 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D +M P ++IEG I +G A I + +++ A + Sbjct: 164 ECEPYLNSDNRLMLENPSSIIEGVKIIKKILGVSTAVIGIEENKPEAIANMKKAAE---- 219 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G I + Y G E L++++ + P K P+ VG+ Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVL-NREVPSGK--LPSAVGV---- 260 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264 V N + A + L G K+ ++SG + P V ++ F Sbjct: 261 -VVQNTGTAAAIYEGLVHGTPLV----------EKVVTVSGKAIATPKNVRIAIGTPFSY 309 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 L+ CG R D L + GG + +E GT+ ++ + Sbjct: 310 LL-DACGVDREKVDKL---VMGGPMMGM------------AQFSEEAPVIKGTSGLLALT 353 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382 + + YK ++C C C + + RL + + Y + Sbjct: 354 KEE---------TNPYKPKACIGCGKCVSACPMSLEPVMFARLAAFQQWEGLQN--YHLM 402 Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406 IE + CA A P+ IK Sbjct: 403 DCIECGS-CAFICPANRPLTEAIK 425 >gi|254433139|ref|ZP_05046647.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Nitrosococcus oceani AFC27] gi|207089472|gb|EDZ66743.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Nitrosococcus oceani AFC27] Length = 491 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 97/255 (38%), Gaps = 43/255 (16%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + N ++ +G+ G GGAGF T +K + P+ L++N E EP D +M Sbjct: 101 DPSHLRNLIRQAGIVGLGGAGFPTFIKLNPGPQPK---VKTLILNGAECEPYITCDEALM 157 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R +I+G I + A+ A+ I + + +L + + G Sbjct: 158 RERAEEIIQGAAIMAHALNAYHCLIGIEDDKPEA-------------CTVLAAAAAEG-- 202 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 I V Y G E L++ L G++ P ++G+ +NV + A V Sbjct: 203 --IEVVPIPTRYPAGGEKQLIKVLTGQEVPSNG---LPIDIGV-----VCHNVGTAAAVY 252 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 + RG S ++ +++G V +P +E + L+ + Sbjct: 253 RAIHRGEPLLS----------RIMTVAGKAVAHPGNLEVLLGTPIRHLLAQQGA----NI 298 Query: 278 DNLLAVIPGGSSVPC 292 ++ +I GG + Sbjct: 299 QSIDRLIMGGPMMGF 313 >gi|154495029|ref|ZP_02034034.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC 43184] gi|154085579|gb|EDN84624.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC 43184] Length = 443 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 62/360 (17%), Positives = 114/360 (31%), Gaps = 61/360 (16%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D + K I++++ A+G+ G GGA F T +K P ++ +++NA E EP Sbjct: 113 DALVKDCTLSSKEIVDKIAAAGIVGLGGATFPTQVKLMPPPGSKAEI---IIINAVECEP 169 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M + ++ G + A+ + A I + L + Y Sbjct: 170 YLTSDHSLMMEKGEQILVGVTLLMKAVNVNKAVIGIENNKPDAIAHLTK-LAAAYPG--- 225 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 I + Y G E L++++ ++ + P + G V Sbjct: 226 -----------IEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV + V ++ + ++ +++G V P M + LIE Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTVTGKAVANPSNFLVRMGTPINTLIEA 316 Query: 269 HCGGIRGGWDNLLA--------------VIPGGSSVPCLPAG-----QMRGAIMDYDGLK 309 G + V G S V L M+ I + Sbjct: 317 AGGIPENTGKIIGGGPMMGKALVSAEVPVTKGSSGVLLLTKEESVRKPMQDCIRCAKCVN 376 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 GL A ++ D KA C +C C +++++ G Sbjct: 377 VCPMGLNPAFLMKFTVYKDWEKAEANYIQ-----DCIECGSCSYTCPANRPLLDQIRLGK 431 >gi|218262923|ref|ZP_03477230.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii DSM 18315] gi|218223065|gb|EEC95715.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii DSM 18315] Length = 443 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 62/360 (17%), Positives = 114/360 (31%), Gaps = 61/360 (16%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 D + K I++++ A+G+ G GGA F T +K P ++ +++NA E EP Sbjct: 113 DALVKDCTLSSKEIVDKIAAAGIVGLGGATFPTQVKLMPPPGSKAEI---IIINAVECEP 169 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M + ++ G + A+ + A I + L + Y Sbjct: 170 YLTSDHSLMMEKGEQILVGVTLLMKAVNVNKAIIGIENNKPDAIAHLTK-LAAAYPG--- 225 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 I + Y G E L++++ ++ + P + G V Sbjct: 226 -----------IEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV + V ++ + ++ +++G V P M + LIE Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTVTGKAVANPSNFLVRMGTPINTLIEA 316 Query: 269 HCGGIRGGWDNLLA--------------VIPGGSSVPCLPAG-----QMRGAIMDYDGLK 309 G + V G S V L M+ I + Sbjct: 317 AGGIPENTGKIIGGGPMMGKALVSAEVPVTKGSSGVLLLTKEESVRKPMQDCIRCAKCVN 376 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369 GL A ++ D KA C +C C +++++ G Sbjct: 377 VCPMGLNPAFLMKFTVYKDWEKAEANYIQ-----DCIECGSCSYTCPANRPLLDQIRLGK 431 >gi|332534028|ref|ZP_08409877.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis ANT/505] gi|332036465|gb|EGI72933.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis ANT/505] Length = 606 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 59/349 (16%), Positives = 120/349 (34%), Gaps = 71/349 (20%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D +IN + +G+ G GGAGF T ++ +L+VNA E EP D Sbjct: 130 ELSHDELINIIHQAGISGMGGAGFPT-----YVKADTKQPIEFLIVNAVECEPYITADDV 184 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +MR +I+G I + + + +++ A + Sbjct: 185 LMREHAKEVIQGIEIMQQLLNPTLCIVGIEDNKPEAIAAMKQAAE--------------- 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 ++ II+ Y G E L++ L + P + PA++G+ V+N ++ Sbjct: 230 HNSKIIIQTVPTIYPSGGEKQLIK-LLTNREVPSIG--IPADIGI-----LVHNTGTLFA 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V + G ++ +++G+ ++ P V + L++ Sbjct: 282 VQQAVYEG----------KPLIERIVTVTGNTIHKPGNVWALLGTEIKHLLD----CQGF 327 Query: 276 GWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 +V+ GG + LP ++ ++ Sbjct: 328 SPVPQQSVVMGGPMMGFTLPTVRI--------------------GIVKTTNCILAPDH-K 366 Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEV 381 L+ ++C +C+ C + + + ++ K +E D L E Sbjct: 367 ELAEPGPEKACIRCSACADACPASLLPQQLQWFAK----SKEYDKLQEH 411 >gi|156934161|ref|YP_001438077.1| electron transport complex protein RnfC [Cronobacter sakazakii ATCC BAA-894] gi|166225091|sp|A7MMK9|RNFC_ENTS8 RecName: Full=Electron transport complex protein rnfC gi|156532415|gb|ABU77241.1| hypothetical protein ESA_01988 [Cronobacter sakazakii ATCC BAA-894] Length = 776 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 79/403 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + ++R W + + R+ +I + G+ G GGAGF TG K + Sbjct: 110 IDADGEDRWIARDGWSDYQC---RSREALIERIHQFGVAGLGGAGFPTGTKL----QGGG 162 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D+ L++NA E EP D +M+ +I+G I + + I + + Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQIIDGVRILAHILQPREVLIGIEDNKPQAIS 222 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++A + + I + Y G L + L GK+ Sbjct: 223 MMRAVLHG---------------EHKIRLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253 +++G+ + NV + V + G ++ +++G V P Sbjct: 265 RSSDIGV-----LMQNVGTAFAVKRAIIDGEPLT----------ERVVTLTGEAVGRPGN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + L+E + VI GG + + Sbjct: 310 VWARIGTPVRHLLEHAG----FIPTSEQLVIMGGPLMGF--------------------T 345 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371 G +V + + + + + + C +C+ C + + + + G Sbjct: 346 LPGLDVPVVKITNCLLAPSATEMGAPQEEQHCIRCSACADACPADLLPQQLYWFSVGQQH 405 Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + + ++ IE C A A+ L++ FR Sbjct: 406 --DKATAHNLADCIE----CG---ACAYVCPSNIPLVQYFRQE 439 >gi|295096019|emb|CBK85109.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 673 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 70/398 (17%), Positives = 128/398 (32%), Gaps = 81/398 (20%) Query: 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80 + R W + R+ +I + G+ G GGAGF TG K D+ L Sbjct: 116 DRWIDRDGWSDYR---SHSREALIERIHQFGVAGLGGAGFPTGAKL----HGGGDKIETL 168 Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 ++NA E EP D +M+ ++EG I + + I + + L+A + Sbjct: 169 IINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVL 228 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 + DI + Y G L + L GK+ +++G Sbjct: 229 AD---------------SHDIALRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 270 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259 + + NV + V + G ++ +++G V+ P V + Sbjct: 271 V-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGESVSRPGNVWARLG 315 Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTA 318 L+E+ VI GG + LP + + L + +G Sbjct: 316 TPVRHLLEQAGFCPGSD----QLVIMGGPLMGFTLPWLDVPVVKITNCLLAPSPTEMG-- 369 Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREID 376 + + C +C+ C + + + + KG + Sbjct: 370 -------------------ETQEEKGCIRCSACADACPADLLPQQLYWYSKGQLH--DKA 408 Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + ++ IE C A AW L++ FR Sbjct: 409 QAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439 >gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] Length = 792 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 107/320 (33%), Gaps = 57/320 (17%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + + N ++ +G+ G GGA F + +K + S + H LV+N E EP D+ Sbjct: 109 QLDPISLRNRIREAGIVGLGGAAFPSAVK---LNPGPSRKIHTLVINGAECEPYITCDQT 165 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M +++G IA A+G +I + E L A+ +C Sbjct: 166 LMSERADQVVQGIQIAMHALGVERCWIAIEDSMPTAHEGLSQAIAQC------------- 212 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D I + Y G E LL+ L G++ P+ +G+ +N +I Sbjct: 213 GDTKIEIKVVPTIYPTGGEKQLLKVLTGQEVPSNG---LPSEIGV-----VCHNPGTIVA 264 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + + G S +G + P +E L+ + G Sbjct: 265 MYRAIAFGEPLISRIVTITGQG---------IASPRNIEALFGTPIAHLVAEAGG----Y 311 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + +I GG M G + D L IV + + + Sbjct: 312 QKGVERLIMGGP---------MMGFALHTDELP-----------IVKATNCILAGQAGEI 351 Query: 337 SVFYKHESCGQCTPCREGTG 356 + + C +C C + Sbjct: 352 ADPGHADPCIRCGACADACP 371 >gi|237808455|ref|YP_002892895.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] gi|237500716|gb|ACQ93309.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] Length = 459 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 94/284 (33%), Gaps = 62/284 (21%) Query: 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140 +VNA E EP D+ +M LI G A GA I ++ ++ +L+ Sbjct: 56 LVNAAECEPMLKVDQQLMTQHASQLIRGLRYGMAATGAREGIIALKAKYQPAIAALE--- 112 Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200 LL N + +H Y G+E + G++ P P ++G Sbjct: 113 ------PLLPEN--------VRIHILPDVYPAGDEVITIWQATGRRVPP---AALPISIG 155 Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260 + VNNV+++ + L E + +I+G V P TV + + Sbjct: 156 V-----VVNNVQTLLNLAAALE----------TETPVTHRTLTINGAVRNPMTVTVPLGV 200 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 T +++ G A I GG + L A + T + Sbjct: 201 TLRDVLTLAGGATIPDP----AFINGGPMMGKLVTD--LDAPVTKT----------TGGL 244 Query: 321 IVMDRSTDII-------KAIWRLSVFYKHESCGQCTPCREGTGW 357 +V+ II AI + C QC C E Sbjct: 245 LVLPEDHLIIQRRKRSDDAILNM----AKTVCEQCGLCTELCPR 284 >gi|302391321|ref|YP_003827141.1| electron transport complex, RnfABCDGE type, C subunit [Acetohalobium arabaticum DSM 5501] gi|302203398|gb|ADL12076.1| electron transport complex, RnfABCDGE type, C subunit [Acetohalobium arabaticum DSM 5501] Length = 442 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 56/350 (16%), Positives = 112/350 (32%), Gaps = 67/350 (19%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILE-------KGRDWIINEVKASGLRGRGGAGFSTGMKW 66 G K+L+ +++ D + + ++ + + V+ +G+ G GGA F + +K Sbjct: 89 GDGEKTLAVTIASDGQDTLHESVKPKGDLDTLSPQELRDIVQEAGIVGLGGATFPSHVKV 148 Query: 67 SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 S D +++N E EP D M ++ G A +I + Sbjct: 149 SIPEDKNVD---TVILNGAECEPYLTVDHRTMVEMSKEVVYGLKAIMKMSDAKQGYIGIE 205 Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186 E ++ V++ +I V Y G E L+++ G++ Sbjct: 206 VNKPDAIEEMKKTVEDEE---------------NIEVISLEVKYPQGAERQLIDACIGRE 250 Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246 P + G+ VNNV + + ++ G G Sbjct: 251 V---PSGGLPLDAGV-----VVNNVGTAVAMTDAIKNGMPLVQRTVTVTGSG-------- 294 Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306 + P + + ++LIE+ G + VI GG + A Sbjct: 295 -IQNPQNLVFRLGTKVEDLIEQCGG----FKGEVGKVIMGGPMMGA--AQHSTDIP---- 343 Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + GT+ +++ Y+ +C +C C + Sbjct: 344 ------ATKGTSGILIFQEDE---------VEEYESSNCIRCARCVDVCP 378 >gi|255524099|ref|ZP_05391060.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] gi|296188445|ref|ZP_06856833.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium carboxidivorans P7] gi|255512236|gb|EET88515.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium carboxidivorans P7] gi|296046709|gb|EFG86155.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium carboxidivorans P7] Length = 442 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 54/333 (16%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K + + Y +VN E EP D+ +MR++ +++ AIGA Sbjct: 20 FPTHIKLNC-------KVEYFIVNGLECEPLLQSDKYMMRNKSDEIVQAVEEIGKAIGAK 72 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++ E+ E ++L+ ++++ ++ I +H Y G+E L+ Sbjct: 73 HLVIGLKEEYRDEIQALKNSIEK--------------FNSKIKLHLSRAFYPAGDEQVLV 118 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + G+ P P NVG V+N +I + ++ A Y Sbjct: 119 YEVTGRTIPP---AGIPLNVG-----AVVSNSGTILNIFEAMQDKAVTY----------- 159 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K ++ G V P V+ + E++EK G + + A+I GG M Sbjct: 160 KFVTVIGEVAKPSIVKVPIGTKVKEVLEKCGGVLTKDY----AIIMGGP---------MM 206 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 G M D ++ A+IV+ + + K+++ C C T Sbjct: 207 GKRMSKDQIEGRVITKTDGAIIVLPEDHYLAQRERMTIEHIKNQAKSACIQCHFCTDMCP 266 Query: 360 R-VMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 R ++ + R I L + + ++ IC Sbjct: 267 RNLIGHPINPHKIMRSIALKEQNEEVLKQAMIC 299 >gi|291278902|ref|YP_003495737.1| electron transport complex protein RnfC [Deferribacter desulfuricans SSM1] gi|290753604|dbj|BAI79981.1| electron transport complex protein RnfC [Deferribacter desulfuricans SSM1] Length = 435 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 114/335 (34%), Gaps = 66/335 (19%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 D V ++G+ G GGA F + +K S K YL++N E EP D +M Sbjct: 117 DKFQENVLSAGIVGLGGATFPSHVKLSPPRK-----IDYLIINGAECEPYLTCDHRLMVE 171 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 + +I+G I + I + ES + + Y+ + Sbjct: 172 KTEEIIKGAKIIQKELEIDNLVIGIEKNKPDAIESFRK--------------FENKYEFE 217 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 +I Y G E L+++ + P K P VG+ V+NV + + Sbjct: 218 LI--PLEVKYPQGGEKQLIKA-TVNRVVPEGK--LPLEVGV-----IVHNVGTALSI--- 264 Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 Y + ++ +++G V P + + + +LIE CGG G + Sbjct: 265 -------YEALEFKKPLIERVVTVTGAVKEPKNLLVPIGVPVSKLIE-FCGGPLGD---I 313 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 V+ GG + + GT+ +I+ S + Sbjct: 314 KKVVMGGPMMGF----SLFDLNTPV--------MKGTSGIILYRDSDLP---NLNM---- 354 Query: 341 KHESCGQCTPCREGTGWMM--RVMERLVKGIAQKR 373 +C +C C E + +ME+ +R Sbjct: 355 --HNCIRCGRCVEACPMGLVPAIMEQFALNEMYER 387 >gi|282857220|ref|ZP_06266464.1| electron transport complex protein RnfC [Pyramidobacter piscolens W5455] gi|282585006|gb|EFB90330.1| electron transport complex protein RnfC [Pyramidobacter piscolens W5455] Length = 447 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 63/354 (17%), Positives = 122/354 (34%), Gaps = 62/354 (17%) Query: 23 SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 W + + ++ +G+ G GGA F +K++ P+ D+ + +V Sbjct: 105 YEKDERWAPLPDYENCDPKEYLKRIREAGIVGFGGATFPAAVKFAPPPQ---DKIKWFIV 161 Query: 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 N E EP D +M +++G + I V Sbjct: 162 NGAECEPYLNCDFRLMMESTDEIVKGTALLLRLFPEAEGVIAVENNKPEAI--------- 212 Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202 + L GS ++LG ++ V Y G E L+E+L G++ PA+VG Sbjct: 213 ---AALSGSVARLGVQ-NVRVQPLTVKYPQGSEKMLIEALTGQEYVVTA---LPADVG-- 263 Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSIT 261 + NV ++ + ++ +++G + P V + + Sbjct: 264 ---CIIANVRTVQ----------QCWRAIALGEPSTERVVTVTGDAIAEPKNVCIPLGTS 310 Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321 EL+ CGG + + V+ GG + M L ++ + GT+ V+ Sbjct: 311 IRELV-DFCGGFKEAP---VKVLAGGPMMG-----------MSMRSL-DVPAVKGTSGVL 354 Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM--RVMERLVKGIAQKR 373 + + +++ +C C C E + ++ LV G R Sbjct: 355 ALTARSTMLRRA---------TACLHCGRCVEACPMGLVPSALDTLVLGKEYDR 399 >gi|56476887|ref|YP_158476.1| electron transport complex protein rnfC (nitrogen fixation protein rnfC) [Aromatoleum aromaticum EbN1] gi|56312930|emb|CAI07575.1| Electron transport complex protein rnfC (Nitrogen fixation protein rnfC) [Aromatoleum aromaticum EbN1] Length = 508 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 115/342 (33%), Gaps = 62/342 (18%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 I V A+G+ G GGA F + +K S + D L++N E EP D Sbjct: 126 FALDPAEIGRRVSAAGIVGLGGAAFPSAVKLSGGREANVD---LLIINGGECEPFLSCDD 182 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 +MR I+G I A GA A I + + Sbjct: 183 RLMRERAADAIDGVAIMLHATGAREARIGIEDNKPEAIA---------------AMRAAA 227 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 I V Y G E L+ +L G + PA+VG+ V+NV + Sbjct: 228 AGHPKIRVEPVPTRYPMGSEKHLVLALTGLEVPANG---RPADVGV-----VVHNVATAV 279 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 V +R G ++L +++G V P VE + DE++E CGG+R Sbjct: 280 AVRDAVRFG----------RPLVSRLVTVNGACVREPGNVEVLIGTLADEVVE-FCGGLR 328 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 ++ GG M L+ + GT ++V+D ++A Sbjct: 329 ADRGAPARLLLGGPMTG-----------MQVPSLR-VPVIKGTGGILVLDGDEVGLRA-- 374 Query: 335 RLSVFYKHESCGQCTPCREGTGWM---MRVMERLVKGIAQKR 373 C +C+ C + + R+ G Sbjct: 375 -------PGPCIRCSTCVRACPVGLLPLEIARRIGAGDLDAA 409 >gi|310780118|ref|YP_003968450.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309749441|gb|ADO84102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 447 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 125/334 (37%), Gaps = 54/334 (16%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K+S D+ YL+VN E EP D+ +MR + +I+ I A Sbjct: 20 FPTHIKFSV------DKVDYLLVNGAECEPLLQIDKYLMREKASEIIKILEQLGDRIQAK 73 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++G++ E L+ A+ + + + Y G+E ++ Sbjct: 74 EIHIALKGKYKSEITELENAIKNL--------------NSRVKIFKMGTYYPAGDEQQIV 119 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + G + P + P +VG+ V NV ++ + Y + Sbjct: 120 FEVTG-RTVP--EAGIPLDVGV-----IVTNVGTLVNI----------YEAVDSDKPVVD 161 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K SI G V P ++ + +TF++ IE G + +I GG M Sbjct: 162 KCLSIHGEVKKPLIIKTPIGMTFEKCIEAAGGATIDNYK----IIVGGP---------MM 208 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359 G ++ + LK+ T A+IV+ +I + +E+ C CR T Sbjct: 209 GKVIVKESLKKEVVTKTTGALIVVPEDHYMIYRNGKTVKHIVNEAKSACIQCRMCTDLCP 268 Query: 360 RVM--ERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 R + +L R + +L S+ ++ +C Sbjct: 269 RYLIGHKLRP-HRIMRNVSMLENDSEILKEAMLC 301 >gi|254509395|ref|ZP_05121478.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio parahaemolyticus 16] gi|219547669|gb|EED24711.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio parahaemolyticus 16] Length = 840 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 64/347 (18%), Positives = 111/347 (31%), Gaps = 67/347 (19%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 + + R V+ + D +I ++ +G+ G GGAGF T K + Sbjct: 108 CIVIHPDGEETWIDR---ACVEDYRQSSPDELIEIIRQAGISGMGGAGFPTAKK----IQ 160 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 R L+VNA E EP D +M+ +I+G I + I + Sbjct: 161 SGLARTEILIVNAAECEPYITADDMLMQEHADEIIQGIEIVEHILKPKLTIIGIEDNKPN 220 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 +LQ A + DI++ Y G E L++ L K+ Sbjct: 221 AVAALQHA----------------ALNKDIVIRVIPTKYPSGGEKQLIKILTNKEVPANG 264 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNY 250 PA++GL V NV S+ + + G ++ +++G Sbjct: 265 ---IPADIGL-----LVQNVGSLQAIKRAVCDGEPLI----------ERIVTLTGDTFKQ 306 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P V + L+++ L +I GG + Sbjct: 307 PRNVWARIGTPVQALLDEFGY---KADKKLPRLIMGGPMMGF------------------ 345 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356 L A V + + I+ + +E +C +C C E Sbjct: 346 ---TLPHANVPITKTANCILAPTRKEISPDHYEMACIRCGQCAEVCP 389 >gi|290967901|ref|ZP_06559451.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782040|gb|EFD94618.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera genomosp. type_1 str. 28L] Length = 446 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 113/324 (34%), Gaps = 66/324 (20%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-R 95 + ++ I++ VKA G+ G GGA F +K + V S +VN E EP D R Sbjct: 119 KMSKEEILDAVKACGIVGCGGATFPVHVKLTPNKPVDS-----FIVNGAECEPYLTCDFR 173 Query: 96 DIMRHEP-HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154 ++ EP + G I +G +I + +L A + Sbjct: 174 SMVEAEPTRKFVTGVQICMKVLGVKKGYIGIEDNKPEAIANLTEAFRQV----------- 222 Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214 ++ V Y G E ++E+ G+ +P P NVG V+NV ++ Sbjct: 223 ----PEVTVVTCKTKYPQGAEKMMIEACTGRLVEP---GGLPMNVG-----CVVSNVGTV 270 Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273 + + G ++ +++G + P + + T++E I+ HCGG Sbjct: 271 IAITDAVCYGIPLI----------ERVTTVTGDCIAEPKNLRLRIGTTYEEAIQ-HCGGF 319 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 D VI GG + A + G + ++ + + Sbjct: 320 SQQPDR---VIAGGPMMGF--AQYQLDIPITK----------GASGILALSSVKCDVG-- 362 Query: 334 WRLSVFYKHESCGQCTPCREGTGW 357 + E C +C C + Sbjct: 363 -------EEEPCIRCGRCVDACPM 379 >gi|167771614|ref|ZP_02443667.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM 17241] gi|167666254|gb|EDS10384.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM 17241] Length = 437 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 69/343 (20%), Positives = 114/343 (33%), Gaps = 64/343 (18%) Query: 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99 + +K SGL G GGAGF T +K + D LVVNA E EP D + Sbjct: 119 HPEFVQAIKESGLVGLGGAGFPTHIKLNPKNLSEVD---TLVVNAAECEPYITSDYRTII 175 Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159 P +++G +G I + + E L+ L + D Sbjct: 176 ERPQDVLDGIEAIKKYVGITQVKIAIEDNKPQAIEMLRR----------LTKD-----DS 220 Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219 I V Y G E G+ + + PA+ G+ V N+ + A + Sbjct: 221 SIEVCSLHAIYPKGAEKVAAYETTGRVIK---EGMLPADAGI-----IVENITTTAFIGQ 272 Query: 220 ILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 LR G TK+ ++ G + P V + F ++I CGG + Sbjct: 273 YLRTGMPLI----------TKMLTVDGGAIAEPKNVIAPIGAHFSDVI-AFCGGYK---R 318 Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 +I GG + L A++ D S +++ Sbjct: 319 PAKKLIMGGPMMGTLVFD------------AAYPVLKNNNALLAFDESQTVVE------- 359 Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 C +C C + +M R ++ + I +L ++ Sbjct: 360 --PEHPCIRCGRCMQNCP--YHLMPRQIEKAYESENIAMLQKL 398 >gi|260589727|ref|ZP_05855640.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia hansenii DSM 20583] gi|260539967|gb|EEX20536.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia hansenii DSM 20583] Length = 449 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 62/319 (19%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 ++ II ++ GL G GGAGF T K+ K L++NA E EP D +M Sbjct: 126 TKEEIIAGIRDGGLTGMGGAGFPTHKKYETDKK-----IDALLINAAECEPFLTCDYRLM 180 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + + G + A GA A++ + + L ++ Sbjct: 181 LEYSYAVANGIRLLLKASGAPKAYLCMEDNKPEAAKVLGKILENTK-------------- 226 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI V Y G E L++++ G++ PA G V+NV + Sbjct: 227 -DIEVKVLPTQYPQGGERQLIQAVLGREV---PMGGLPAEAG-----AIVSNVGTAKATA 277 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278 +L ++ +++G V P + + EL+E CGG+ + Sbjct: 278 DMLLGKTPLIR----------RIVTVTGCVKNPGNYLVPIGTSAKELVE-LCGGVTVKNN 326 Query: 279 NLLAVIPGGS-SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 VI GG + PC+ + + + Y T+ ++V+ S Sbjct: 327 R---VIAGGPMTGPCVASDWNGESELFYVT-------KNTSGILVLPDSQ---------- 366 Query: 338 VFYKHESCGQCTPCREGTG 356 Y+ + C +C C Sbjct: 367 --YEEQPCIRCAGCESVCP 383 >gi|323498079|ref|ZP_08103084.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM 21326] gi|323316859|gb|EGA69865.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM 21326] Length = 617 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 114/348 (32%), Gaps = 67/348 (19%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 +Q R + + D +I ++ +G+ G GGAGF T K Sbjct: 107 TCIVIQPDGEDRWCERQQYQDFS---SLSPDELIEIIRQAGISGMGGAGFPTAKK----I 159 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + R L+VNA E EP D +M+ + +I G I + I + Sbjct: 160 QSGLARTDILIVNAAECEPYITADDMLMQEHANEIITGIEIVEHILKPKLTIIGIEDNKP 219 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 ++LQAA D D DII+ Y G E L++ L K+ Sbjct: 220 DAVKALQAAAD----------------DKDIIIRVIPTKYPSGGEKQLIKILTNKEVPAN 263 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VN 249 PA++GL V NV S+ + + G ++ +++G Sbjct: 264 G---IPADIGL-----MVQNVGSLQAIKRAVCDGEPLV----------ERIVTLTGDTFK 305 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P V + L+++ L +I GG + Sbjct: 306 QPRNVWAMIGTPVQSLLDEFGY---KADKKLERLIMGGPMMGF----------------- 345 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356 L A V + + I+ + ++E +C +C C E Sbjct: 346 ----TLPHANVPITKTANCILAPTRKEISPNQYEMACIRCGQCAEACP 389 >gi|210615656|ref|ZP_03290702.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787] gi|210150199|gb|EEA81208.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787] Length = 446 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 107/336 (31%), Gaps = 67/336 (19%) Query: 27 GHWDNVD----KIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 G + V+ K L E ++ I+N + +G+ G GGAGF T +K S ++ Y++ Sbjct: 110 GEYQEVEYTPSKPLDELTKEEILNLIGEAGIVGMGGAGFPTKVKLS---PKEPEKIEYVI 166 Query: 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 N E EP D M P L+ G + V L+ Sbjct: 167 ANCAECEPYITADYRRMLENPEELVSGMKVVLKLFDNAKGIFGVEDNKPDCIAKLKE--- 223 Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 L + + V Y G E L+ + G+ + PA+ G Sbjct: 224 -------LTKDEP-----RMEVLALKTKYPQGAERQLIFATTGRAINSSM---LPADAG- 267 Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSI 260 V+NVE++ + + E ++ ++SG V P + Sbjct: 268 ----CVVDNVETLIGIHYAVID----------ERPVMERIVTVSGDGVKAPGNFKVLFGT 313 Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 EL+E G + VI GG + A + +++ Sbjct: 314 NQRELVEAAGGFLGEPEK----VISGGPMMGF--AMFTLDTPITKTS----------SSI 357 Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 + + + + + +C C C E Sbjct: 358 LCLTKD----EVAAN-----EPSACINCGRCVEVCP 384 >gi|311694180|gb|ADP97053.1| electron transport complex, RnfABCDGE type, C subunit [marine bacterium HP15] Length = 580 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 107/332 (32%), Gaps = 70/332 (21%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + ++++ D ++ ++ +G+ G GGAGF T +K L++N E Sbjct: 89 DYRSLER------DEVLQIIRDAGISGMGGAGFPTNIKLRPPRDRK---VSTLILNGAEC 139 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D MR + ++ G I ++ + I + +L+ A + Sbjct: 140 EPYITADDMTMREKADEVVAGLKIMAWILRPERCVIGIEDNKPEAIAALRKATEGTQT-- 197 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + Y G E L++ L G + PA++G+ Sbjct: 198 --------------EIAVVPTKYPSGGEKQLIQILTGMEV---PSGGIPADIGV-----M 235 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELI 266 N+ + V + G S ++ +I+G V P E + L+ Sbjct: 236 CQNIGTAVAVANAVLEGTPLIS----------RIVTITGEAVREPGNFETLIGTPIKHLL 285 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 G D + ++ GG + L T AV V+ + Sbjct: 286 ----GQAGVNQDAVSRLVLGGPMMGY---------------------TLTTEAVPVIKTT 320 Query: 327 TDIIKA-IWRLSVFYKHESCGQCTPCREGTGW 357 +I A L + C +C C E Sbjct: 321 NCVIAATAAELPAPPPEQPCIRCGQCAEACPM 352 >gi|326796152|ref|YP_004313972.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas mediterranea MMB-1] gi|326546916|gb|ADZ92136.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas mediterranea MMB-1] Length = 1029 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 99/317 (31%), Gaps = 62/317 (19%) Query: 42 WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 ++ + G+ G GGAGF T +K K + ++NA E EP D ++R Sbjct: 128 DVLAYLSEMGIVGMGGAGFPTQVKLQGAHKHP---LSHFIINAAECEPYITADDMLIRER 184 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 LI G I + A I + +L+ + E + I Sbjct: 185 TLELILGIEILQHLVEAEQVVIGIEDNKPTAIAALKQVIRER--------------NSTI 230 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V Y G E L++ L K+ PA++G+ NV + + + Sbjct: 231 QVAVVPTKYPSGGEKQLIKLLTNKEV---PSGRHPADIGV-----LCQNVGTCTAIYDAI 282 Query: 222 RRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 G T+ +++G P VE + L+E L Sbjct: 283 YHG----------KPLITRYTTLTGDAFEAPQNVEVLLGTPVSHLLEYAG----TIDKKL 328 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR-LSVF 339 ++ GG + L V V+ + I+ A + L Sbjct: 329 NRLVMGGPMMGF---------------------TLNADTVPVVKTTNCILAASKKELPEP 367 Query: 340 YKHESCGQCTPCREGTG 356 + C +C C + Sbjct: 368 APEQPCIRCGMCEQACP 384 >gi|291519330|emb|CBK74551.1| electron transport complex, RnfABCDGE type, C subunit/electron transport complex, RnfABCDGE type, D subunit [Butyrivibrio fibrisolvens 16/4] Length = 760 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 66/387 (17%), Positives = 132/387 (34%), Gaps = 66/387 (17%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 ++ + II +++ +G+ G GGAGF T +K S + +++ N E Sbjct: 109 GFEACADYTNLSNEEIIKKIQEAGIVGMGGAGFPTHVKLS---PKNPEAIEFIIANCAEC 165 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D M EP LIEG I + + + ++L + Sbjct: 166 EPYLTSDYRSMVEEPEKLIEGMKIILQLFPKAKGLLGIEDNKMDVIQNLTKLCAKER--- 222 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 I V Y G E L+++ G++ ++ PA+ G Sbjct: 223 ------------RIEVVPLVTKYPQGGERQLIKACTGREINSKM---LPADAG-----CI 262 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V+NV +I V T + G ++F+I+G + P ++ ++ E++ Sbjct: 263 VDNVATINAVYTAVVEGKPVMD----------RIFTITGDAIMEPRNFRINIGTSYKEIL 312 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPC----------LPAGQMRGAIMDYDGLKEMGSGLG 316 + G +R +I GG + +G + D +E + + Sbjct: 313 DAAEGYVRDP----KKLISGGPMMGFALMDIDIPTTKTSGALLALSYDDVSEQETTACIN 368 Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHES--------CGQCTPCREGTG------WMMRVM 362 + I + + S E C +C C ++ M Sbjct: 369 CGRCVEACPENLIPSRLSKFSDHGDKEQFEKWYGLECIECGSCSYACPAKQPLAQAIKTM 428 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRT 389 +++V +K + ++S ++ + Sbjct: 429 KKIVLAEKRKSRKER-KDMSNLLKVSS 454 >gi|218961809|ref|YP_001741584.1| electron transport complex protein rnfC, NAD and 4Fe-4S binding subunit (rnfC fragment) [Candidatus Cloacamonas acidaminovorans] gi|167730466|emb|CAO81378.1| electron transport complex protein rnfC, NAD and 4Fe-4S binding subunit (rnfC fragment) [Candidatus Cloacamonas acidaminovorans] Length = 439 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 65/349 (18%), Positives = 117/349 (33%), Gaps = 51/349 (14%) Query: 41 DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100 + + + +G+ G GGAGF T +K S D +++N E EP D +M Sbjct: 124 EEMKKRIGEAGICGMGGAGFPTLVKLSPPADKPID---TVILNGVECEPYLTSDHRLMLE 180 Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160 + +I G + + A I + +Q L N Sbjct: 181 KGEEIIIGLKLIMKILSAKKGMIGIEANKPDAIAKMQE----------LTKNEP-----H 225 Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220 I V Y G E L+ + K+ P P VG+ V NV + + Sbjct: 226 IEVVPLKLRYPQGAEKQLIYAAT-KRKVP--AGGLPLEVGI-----VVQNVGTAFAIYEA 277 Query: 221 LRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279 +R + ++ +++G V P + + F EL++ G Sbjct: 278 IRY----------QKPLIQRVITVTGSPVTKPQNLLARIGTPFSELVDFCGGTKEEVGKV 327 Query: 280 LLAVIPGGSSVPCLPA------GQMRGAIMDYDGLKEMGSGLGTA---AVIVMDRSTDI- 329 + G ++P L A G + + L E G+ L A V ++ + Sbjct: 328 ICGGPMMGFALPTLEATVGKGSGGLVLMNTEDARLNEEGNCLRCARCVDVCPLNLVPCMI 387 Query: 330 IKAIWRLSVFYKHES----CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 + A+ + S C +C C +R+++ + G + E Sbjct: 388 VSAVKYDNQKLAVRSGLNDCMKCGACAYVCPAQIRLVQYIDTGKIRYAE 436 >gi|91228908|ref|ZP_01262808.1| electron transport complex protein RnfC [Vibrio alginolyticus 12G01] gi|91187539|gb|EAS73871.1| electron transport complex protein RnfC [Vibrio alginolyticus 12G01] Length = 878 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 67/347 (19%), Positives = 124/347 (35%), Gaps = 66/347 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QETSDALIDVIRLAGISGMGGAGFPTAKK----IQSGFARTEILIVNAAECEPYITSDDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ LI+G I + I + ++L+AA Sbjct: 186 LMQEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 230 INKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGAIPADIGI-----LVQNVGSLYA 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G P V + L+++ Sbjct: 282 IKRAVIDGEPMIK----------RIVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L + V + + I+ R Sbjct: 329 ADKKLQRLIMGGPMMGF---------------------TLPHSQVPITKTANCILAPTRR 367 Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 +++E C +C+ C E ++ + ++ A+ E D L E+ Sbjct: 368 EISPHQYEMECIRCSQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412 >gi|148977610|ref|ZP_01814186.1| electron transport complex protein RnfC [Vibrionales bacterium SWAT-3] gi|145963125|gb|EDK28393.1| electron transport complex protein RnfC [Vibrionales bacterium SWAT-3] Length = 964 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 71/375 (18%), Positives = 133/375 (35%), Gaps = 71/375 (18%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 ++ L + R + V+ K D +++ ++ +G+ G GGAGF T K + Sbjct: 111 IKPDGLDAWIER---NPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGL 163 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 R L+VNA E EP D +++ +++G I + I + + Sbjct: 164 GRTDILIVNAAECEPYITSDDKLLQEHAEEVLKGIEIVEHILQPKLTVIGIEDNKPAAIK 223 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 +++ A D DI++ Y G E L++ L K+ Sbjct: 224 AVEVA----------------AKDKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PAGG 264 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 PA++G+ V NV S+ + + G + ++ +++G P Sbjct: 265 IPADIGV-----LVQNVGSLYSIKRAVIDGEPVVN----------RVVTLTGKTFKQPRN 309 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 V + EL+E+ L +I GG + Sbjct: 310 VWALLGTPVHELLEEFGY---KADKKLPRLILGGPMMGF--------------------- 345 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQK 372 L A V + S I+ R +E C +C+ C E ++ + ++ A+ Sbjct: 346 TLPHANVPITKTSNCILAPTRREIAPSTYEMECIRCSACAEACP--ASLLPQQLQWHAKA 403 Query: 373 REIDLLYEVSKNIEG 387 E+D E+ NI+ Sbjct: 404 NELDKCEEL--NIKD 416 >gi|281357469|ref|ZP_06243957.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis vadensis ATCC BAA-548] gi|281316072|gb|EFB00098.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis vadensis ATCC BAA-548] Length = 440 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 104/317 (32%), Gaps = 63/317 (19%) Query: 42 WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101 ++ +GL G GGA F T +K S P D L++N E EP D +M + Sbjct: 127 ELLKRTADAGLVGMGGAAFPTHVKLSPPPDKTID---TLILNGAECEPYLTADHRLMLEQ 183 Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161 P ++EG I++ + +I V I E+L + + I Sbjct: 184 PERVLEGAAISAKILNVKNVYIGVEANKIDAIEAL----------------GRRAAEFGI 227 Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221 V Y G E L+ ++ G+K P + G V NV + A + + Sbjct: 228 KVATLKVQYPQGSEKQLIMAITGRKV---PTGGLPMDAG-----CVVQNVGTAAAMTDAV 279 Query: 222 RRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280 RG ++ +I+G V P + + IE G Sbjct: 280 CRGIPLV----------ERVTTITGEVVKNPGNWLLKIGTPVIKAIEFAGGVTAEPGK-- 327 Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340 +I GG + E+ T+ ++++ ++ Y Sbjct: 328 --LILGGPMMGFAQKSF------------EVPVAKNTSGILLLP-----VELSMN----Y 364 Query: 341 KHESCGQCTPCREGTGW 357 C +C C EG Sbjct: 365 GSTGCIRCGRCVEGCPM 381 >gi|256544870|ref|ZP_05472241.1| Na(+)-translocating NADH-quinone reductase, A subunit [Anaerococcus vaginalis ATCC 51170] gi|256399369|gb|EEU12975.1| Na(+)-translocating NADH-quinone reductase, A subunit [Anaerococcus vaginalis ATCC 51170] Length = 443 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 60/360 (16%), Positives = 118/360 (32%), Gaps = 57/360 (15%) Query: 33 DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92 + ++ I+ +K +GL G GGA F +K+S + +++N E EP Sbjct: 120 KDVTNLTKEKIVEAMKENGLVGMGGASFPAHIKYS-----PNKPIDTVIINGAECEPYVT 174 Query: 93 KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152 D I++ +P +++ + A+ A I + E ++ A+ N Sbjct: 175 CDDFILKTKPEVIVDALELLVQAVDAKKGIIAIEDNKAEAIEKVKKALAN--------KN 226 Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 S + V Y G+E ++ ++ + P P +VG+ V+NV Sbjct: 227 SS-----KLEVATMVTKYPQGDEKRIINAVL-HREVP--SGGLPMDVGV-----IVSNVS 273 Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272 S V + G + G + P + +FD +IE+ G Sbjct: 274 SANAVYEAVYYGKPLIERYMTVTGHG---------IKNPSNFLVRIGTSFDHMIEEAGGL 324 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL-----KEMGSGLGTAAV-IVMDRS 326 VI GG + + + + +E + + + + Sbjct: 325 TEEAGK----VINGGPMMGIAQPNINQPVEKASNCILVLNKEESKAPITNPCIRCAKCVN 380 Query: 327 TDIIKAI-WRLSVFYKHES-----------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374 + + + F E C +C C ++E + G Q R+ Sbjct: 381 VCPVGLMPLLIHKFSLKEKFDKAQDLHILDCIECGSCSYICPSKRPLVEAIRFGKRQIRQ 440 >gi|324549306|gb|ADY49747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum] Length = 112 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 5/95 (5%) Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 MD+D L E SGLGTAAVIVM++ DI+K I RLS+FYKHESCGQCTPCREG W+ +VM Sbjct: 1 MDFDSLIEAQSGLGTAAVIVMNKQADIVKCIARLSLFYKHESCGQCTPCREGCNWLNKVM 60 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGR-----TICA 392 R V G A+ EID+L+E+S+++EG +C Sbjct: 61 WRFVHGRAKPDEIDMLWEISRHMEGAHNLCSCLCG 95 >gi|332299855|ref|YP_004441776.1| Electron transport complex protein rnfC [Porphyromonas asaccharolytica DSM 20707] gi|332176918|gb|AEE12608.1| Electron transport complex protein rnfC [Porphyromonas asaccharolytica DSM 20707] Length = 450 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 66/374 (17%), Positives = 125/374 (33%), Gaps = 50/374 (13%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + G D + + + +E II+ + G+ G GGA F T +K S P + Sbjct: 100 VDGDEWVDYIDQTD--TLVTDIELDAKQIIDRIAEMGIVGMGGATFPTHVKLSPPPGQSA 157 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 D Y+++NA E EP D +MR + ++ GC I A A I + Sbjct: 158 D---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMKAANAPRTLIGIENNKPDAIR 214 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 ++ A + G I V Y G E L+++L K+ Sbjct: 215 IMRDAAERAKEFLPEGQ--------SIAVVPLKKRYPQGGEKQLIDALIRKQV---ASGA 263 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 P + G V NV + + Y + ++ +++G + P Sbjct: 264 LPISTG-----AIVQNVGTTFAI----------YEAVMKHKPLIERIITVTGRAIARPSN 308 Query: 254 VEESMSITFDELIEK-----------HCGGIRGGWDNLLAVIPG--GSSVPCLPAGQMRG 300 + + LI+ GG G + IP GSS + + + Sbjct: 309 FKARIGTPMQTLIDAAGGYAEEPGKIIGGGPMMGRALVSTDIPVAKGSSGLLILSAKEST 368 Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH---ESCGQCTPCREGTGW 357 +D ++ + + ++ + + I++ +H C +C C Sbjct: 369 RPEMHDCIRCGKCV--SVCPMGLNPAFLMRDTIYKDWESTEHNYIADCIECGSCSYTCPA 426 Query: 358 MMRVMERLVKGIAQ 371 +++ + G Sbjct: 427 GRPLLDYIRVGKQT 440 >gi|291460671|ref|ZP_06600061.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291416630|gb|EFE90349.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 485 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 53/345 (15%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + R+ I++ V+ +G+ G GGAGF T +K S ++ Y +VN E Sbjct: 139 GFGEKRDYKSLSREEIVSIVRDAGIVGLGGAGFPTAVKLS---PKEPEKIDYFLVNGAEC 195 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP C D M P LI G + I + L V Sbjct: 196 EPYLCSDYRDMLEYPERLIGGLRVLLRLFPNAAGKICIEDNKPEAIRKLSELVKS----- 250 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + + V Y G E L+ + G+K + PA+ G+ Sbjct: 251 ----------EDRMEVLSLRTRYPQGGERQLIYAATGRKINSSM---LPADAGV-----V 292 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V+NV+++ + + ++ +++G V P + I++ E+I Sbjct: 293 VDNVDTVIAIYDAVCESMPLVR----------RILTVTGDAVVKPGNFRVPLGISYQEII 342 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPA----------GQMRGAIMDYDGLKEMGSGLG 316 + G + G + L ++ + + G Sbjct: 343 DAAGGFKEDPEKVISGGPMMGVPLFKLDVPLVKNSSSILAFLKDPVSAEPTTACINCGRC 402 Query: 317 TAA-----VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356 +A + + + + K R + Y E C +C C Sbjct: 403 VSACPENLMPTLMMQSALRKDTARFTKLYGME-CIECGCCSYVCP 446 >gi|324114121|gb|EGC08094.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Escherichia fergusonii B253] gi|325497743|gb|EGC95602.1| propanediol utilization protein: ferredoxin pduS [Escherichia fergusonii ECD227] Length = 446 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 102/301 (33%), Gaps = 61/301 (20%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K + +VNA E EP D+ +M + L+ G + A GA Sbjct: 29 FPTWVKLQA-------QVDTFLVNAAECEPMLKVDQQLMAQQAERLVRGVLYGMKATGAS 81 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++ ++ + A+ E + +I +H Y G+E + Sbjct: 82 HGIIALKEKYQPAIK----ALSELLPA-------------EIRLHILPDVYPAGDEVLTI 124 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 G++ P P +VG+ VNNV+++ + + +G + Sbjct: 125 WLATGRRVPP---AALPVSVGI-----VVNNVQTVLNIARAVEQGLAVTR---------- 166 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 + +++G V P T+ + I+ E+++ G I GG + L Sbjct: 167 RTLTVNGAVARPVTLTVPIGISLREVLQMAGGATIDTP----GFINGGPMMGSLITS--L 220 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356 + T ++V+ S +I+ + C QC C + Sbjct: 221 DTPVSKT----------TGGLLVLPDSHPLIQRRKQNDNAVLSVARTVCEQCRLCTDLCP 270 Query: 357 W 357 Sbjct: 271 R 271 >gi|225017719|ref|ZP_03706911.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum DSM 5476] gi|224949512|gb|EEG30721.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum DSM 5476] Length = 436 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 74/389 (19%), Positives = 126/389 (32%), Gaps = 80/389 (20%) Query: 20 LSDSMSRGH----------------WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63 L D + G ++V ++ + V GL G GGAGF T Sbjct: 85 LMDYTAYGGVVVPAIVIETDGKQEVHESVKPPRITTKEEFLEAVYEQGLVGLGGAGFPTH 144 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 K SF V D L++N E EP D M ++ G +G A I Sbjct: 145 TKLSFGEDVKVDI---LIINGAECEPYITSDNREMVENADDIVYGIEQVQKFLGIERALI 201 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183 + LL ++ I V Y G E L+ S Sbjct: 202 GIEDNKQEALS-------------LLAQKTESSKG--IEVVSLKSRYPQGAEKVLIYSTT 246 Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243 G+ + PA VG+ V NV SI+ LR G + K + Sbjct: 247 GRVV---PEGAIPAEVGV-----VVMNVTSISKFGRYLRTGMPLTA----------KRLT 288 Query: 244 ISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302 + G + P V + ++I CGG ++ GG + + Sbjct: 289 VDGDCITNPQNVRALIGTPVQDVI-DFCGG---FKKTPKKILCGGPMMGV----ALLDTS 340 Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362 +K + L ++ +++D+ T +C +C C + +M Sbjct: 341 TPV--IKNNNAILALSSDVLLDQPT---------------TACIRCGKCIGACP--VHLM 381 Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTIC 391 ++ +++++L ++S N+ C Sbjct: 382 PVSIEKAYDAQDVEMLQKLSVNLCINCGC 410 >gi|188585133|ref|YP_001916678.1| electron transport complex, RnfABCDGE type, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349820|gb|ACB84090.1| electron transport complex, RnfABCDGE type, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 440 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 98/312 (31%), Gaps = 59/312 (18%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I N VK +G+ G GGA F T +K S D +++N E EP D +M Sbjct: 121 SAEEIKNVVKEAGIVGLGGATFPTHVKISPPEDKPID---TVLINGAECEPFLTSDHRLM 177 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 + +I G A+ I + E++ + V + D Sbjct: 178 VEQAEKIIFGLRAIMKAVNCDRGIIAIEDNKPDAVEAMNSLVTD---------------D 222 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 + V Y G E L+++ ++ P +VG VNN + V Sbjct: 223 DSLEVMTFETKYPQGAEKQLIKAALDREV---PSGGLPMDVG-----CVVNNTGTALAVA 274 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 LR ++ +ISG + + +LIE+ G Sbjct: 275 DALR----------TNKPILERVVTISGPGIEQSGNFMVRLGTLASDLIEQLGGMG---- 320 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 D +I GG + I G+ L V + + I Sbjct: 321 DQTRKIIMGGPMMGISQPNADFPVIKGTSGV----LLLTDQEVQIFEERPCI-------- 368 Query: 338 VFYKHESCGQCT 349 +CG+C Sbjct: 369 ------NCGRCV 374 >gi|333031168|ref|ZP_08459229.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides coprosuis DSM 18011] gi|332741765|gb|EGJ72247.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides coprosuis DSM 18011] Length = 445 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 73/406 (17%), Positives = 139/406 (34%), Gaps = 80/406 (19%) Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74 + G +S+ R + K E + I+ + G+ G GGA F T +K + P + Sbjct: 100 VDGDEWEESIDRSD--ALIKDCELSSEDIVKRIADCGVVGLGGACFPTQVKLTPPPSFKA 157 Query: 75 DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134 + +++NA E EP D +M + +I G I A+ + AFI + Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEKAEEIIVGVTIIMKAVKVNKAFIGIENNKPDAIA 214 Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 + V YA I V Y G E L++++ ++ P Sbjct: 215 LMTK-VASTYAG--------------IEVVPLQVKYPQGGEKQLIDAVISRQVSSGALPI 259 Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253 V NV + + ++ + ++ +++G +N P Sbjct: 260 STG--------AVVQNVGTAYAIYEAVQ----------KNKPLFERVITVTGKSLNKPSN 301 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313 + +LI CGG+ + VI GG M A+M+ E+ + Sbjct: 302 FLARIGTPMQQLI-DACGGL---PEGAGKVIGGGP--------MMGKALMN----TEVPT 345 Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373 G++ +++M+ + R + ++C +C C + ++ Sbjct: 346 AKGSSGILIMNE-----EEAKRGEI----QTCIRCAKCVSICPMGLEPYLLSALAEHREF 396 Query: 374 EIDLLYEVSKNIEGRT-------------ICALGDAAAWPIQGLIK 406 E + IE + C LG A + G+I+ Sbjct: 397 EEMESERIMDCIECGSCQFTCPTNRPLLDFCRLGKAT---VGGMIR 439 >gi|323486693|ref|ZP_08092014.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum WAL-14163] gi|323692168|ref|ZP_08106411.1| electron transport complex [Clostridium symbiosum WAL-14673] gi|323400074|gb|EGA92451.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum WAL-14163] gi|323503742|gb|EGB19561.1| electron transport complex [Clostridium symbiosum WAL-14673] Length = 441 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 119/349 (34%), Gaps = 64/349 (18%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + N + ++ I N +K +G+ G GGAGF T +K + + D ++VN E Sbjct: 112 GFGNARDYTKLSKEEIRNIIKEAGIVGLGGAGFPTHVKLTPKDEAAIDH---VIVNGAEC 168 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +M P +I G + I + + L V + Sbjct: 169 EPYLTSDYRVMMERPEQIIGGLKVILQLFDNAKGIIGIENNKPEAIKKLTEMVKD----- 223 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + I V Y G E L+ ++ G++ + PA+ G Sbjct: 224 ----------EPRIEVCPLLTKYPQGGERTLIYAVTGREINSSM---LPADAG-----CV 265 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V+N++++A + + K+ +++G V P + + + L+ Sbjct: 266 VDNIDTVAAIYDAVCNTTPLLR----------KIITVTGDAVANPQNFQVRLGTNYKRLL 315 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 E GG + + +I GG + L + + + + + Sbjct: 316 E-AAGGFKQEPEK---MISGGPMMG--------------QALFSLDFPVAKTSSALTTFT 357 Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373 D + A+ + C +C C + + ++M + ++ Sbjct: 358 KDQVAAM-------EPTPCIRCGKCVDVCPEHLVPQMMMDAAERHDMEK 399 >gi|308094766|ref|ZP_07663043.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AN-5034] gi|308093502|gb|EFO43197.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AN-5034] Length = 772 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 119/346 (34%), Gaps = 64/346 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 33 QESADALIDIIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 88 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ LI+G I + I + ++L++A Sbjct: 89 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 132 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 133 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLYS 184 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G P V + L+++ Sbjct: 185 IKRAIIDGEPMI----------ERVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 231 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L + A ++ + I A Sbjct: 232 ADKKLQRLIMGGPMMGF--------------TLPHSQVPITKTANCILAPTRHEISAHQY 277 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 C +C C E ++ + ++ A+ E D L E+ Sbjct: 278 EME------CIRCGQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 315 >gi|28898878|ref|NP_798483.1| electron transport complex protein RnfC [Vibrio parahaemolyticus RIMD 2210633] gi|260897154|ref|ZP_05905650.1| electron transport complex protein RnfC [Vibrio parahaemolyticus Peru-466] gi|260902709|ref|ZP_05911104.1| electron transport complex, rnfABCDGE type, c subunit family protein [Vibrio parahaemolyticus AQ4037] gi|28807097|dbj|BAC60367.1| RnfC-related protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087160|gb|EFO36855.1| electron transport complex protein RnfC [Vibrio parahaemolyticus Peru-466] gi|308109009|gb|EFO46549.1| electron transport complex, rnfABCDGE type, c subunit family protein [Vibrio parahaemolyticus AQ4037] Length = 869 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 119/346 (34%), Gaps = 64/346 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QESADALIDIIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ LI+G I + I + ++L++A Sbjct: 186 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 230 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLYS 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G P V + L+++ Sbjct: 282 IKRAIIDGEPMI----------ERVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L + A ++ + I A Sbjct: 329 ADKKLQRLIMGGPMMGF--------------TLPHSQVPITKTANCILAPTRHEISAHQY 374 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 C +C C E ++ + ++ A+ E D L E+ Sbjct: 375 EME------CIRCGQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412 >gi|154482955|ref|ZP_02025403.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC 27560] gi|149736239|gb|EDM52125.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC 27560] Length = 437 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 108/319 (33%), Gaps = 60/319 (18%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 +++I VK G+ G GGA F T +K + D Y++VNA E EP D + Sbjct: 118 SKEYIREAVKDCGVVGLGGACFPTNVKLTPKDDNAID---YVIVNAAECEPYITSDYRRL 174 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 +P +IEG I I V E+L+ L N Sbjct: 175 VEQPQEVIEGLKIVLSLFENAKGVIAVENNKPDVIENLKK----------LTENED---- 220 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 I V Y G E ++ ++ +K + PA+ G V+NV++I + Sbjct: 221 -RIQVAELKTKYPQGSERHIIYAVTKRKINSSM---LPADGG-----CIVDNVDTIYNIY 271 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 ++ ++ ++SG+ + PC + + +L+E+ G Sbjct: 272 QAVKF----------HKPLTERIVTVSGNGIKNPCNLLVPFGTSHSQLVEEAGGMDESVE 321 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 L GG + A + G++A++ Sbjct: 322 KIL----SGGPMMG--QAMFTLDVPV----------IKGSSALLAFKNDQVAHAKTTNCL 365 Query: 338 VFYKHESCGQCTP-CREGT 355 +CG+C C EG Sbjct: 366 ------NCGKCAQVCPEGL 378 >gi|149378172|ref|ZP_01895889.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Marinobacter algicola DG893] gi|149357534|gb|EDM46039.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Marinobacter algicola DG893] Length = 612 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 108/323 (33%), Gaps = 64/323 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + R+ ++ ++ +G+ G GGAGF T +K + L++N E EP D Sbjct: 121 DLDRETVLERIRDAGISGMGGAGFPTNIKLRPPRDRK---VNTLILNGAECEPYITADDM 177 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 MR +I G I ++ + I + +L+ A + Sbjct: 178 SMRENAGEIIAGLRIMAWVLRPERVVIGIEDNKPEAISALRKAAEGTQT----------- 226 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + Y G E L++ L G + PA++G+ NV + Sbjct: 227 -----EIAVIPTKYPSGGEKQLIQILTGMEV---PSGGIPADIGV-----MCQNVGTAIA 273 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 V + RG S ++ +++G V P E + + D L+ + Sbjct: 274 VSAAIHRGEPLIS----------RVTTVTGDAVTDPGNFEVLIGTSIDYLLAQAG----P 319 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW- 334 + L ++ GG + L T A+ V+ + +I A Sbjct: 320 EQNKLHRLVLGGPMMGY---------------------TLETPAIPVVKTTNCVIAATAT 358 Query: 335 RLSVFYKHESCGQCTPCREGTGW 357 L + C +C+ C E Sbjct: 359 ELPDPAPEQPCIRCSMCAEACPM 381 >gi|331085097|ref|ZP_08334183.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407880|gb|EGG87370.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 438 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 90/265 (33%), Gaps = 41/265 (15%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 W V + + ++ I+N + +G+ G GGAGF T +K S ++ Y++ N E E Sbjct: 110 WREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS---PKEPEKIEYIIANCAECE 166 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D M P L+ G + + E L+ Sbjct: 167 PYITADYRRMLETPEKLVGGMKVVLQLFENAKGIFGIEDNKPDCIEKLKE---------- 216 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 L + + V Y G E L+ + + + PA+ G V Sbjct: 217 LTKDEP-----RMEVKVLQTKYPQGAERQLIYATTKRAINSSM---LPADAG-----CIV 263 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 +NVE++ + + G Y ++ ++SG V P ++ ELIE Sbjct: 264 DNVETLIAIYEAVISGKPLY----------ERVVTVSGDAVKEPGNFLAPCGMSQMELIE 313 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPC 292 G VI GG + Sbjct: 314 MAGG----FEGVPEKVISGGPMMGF 334 >gi|332981731|ref|YP_004463172.1| RnfABCDGE type electron transport complex subunit C [Mahella australiensis 50-1 BON] gi|332699409|gb|AEE96350.1| electron transport complex, RnfABCDGE type, C subunit [Mahella australiensis 50-1 BON] Length = 442 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 108/321 (33%), Gaps = 59/321 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + II+ +K +G+ G GGA F T +K S P R +++N E EP D Sbjct: 119 KLSDKEIIDVIKEAGIAGLGGAAFPTHVKLSPPPDK---RVELVIINGAECEPYLTCDHR 175 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M + ++ G A+G I + + A G Sbjct: 176 LMLEQTDDVVYGTRAIMKALGVSKGIIAIENNKPDAIAVMLKA--------------ASG 221 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 Y +I V Y G E L++++ GK+ PA+VG T V+NV + A Sbjct: 222 YANNIEVVALKTKYPQGAEKQLIKAITGKEV---PSGGLPADVG-----TVVDNVGTAAA 273 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 + ++ G RG + P + + F +LI++ G Sbjct: 274 IARAIKTGMPLIERAVTVTGRG---------IKEPANLMVRIGTPFSQLIDECGG----F 320 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 D VI GG + A + GT+ ++V+ + Sbjct: 321 ADKPGKVIMGGPMMGI--AQYSLDVPV----------IKGTSGILVLTEEEAQAPQV--- 365 Query: 337 SVFYKHESCGQCTPCREGTGW 357 + C +C C E Sbjct: 366 ------QVCIRCARCVEACPM 380 >gi|86147961|ref|ZP_01066265.1| electron transport complex protein RnfC [Vibrio sp. MED222] gi|85834286|gb|EAQ52440.1| electron transport complex protein RnfC [Vibrio sp. MED222] Length = 902 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 70/378 (18%), Positives = 133/378 (35%), Gaps = 71/378 (18%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 ++ L + + + V+ K D +++ ++ +G+ G GGAGF T K + Sbjct: 108 CVVIKPDGLDAWIEK---NPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----Q 160 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 R L+VNA E EP D +++ +++G + + I + Sbjct: 161 SGLGRTDILIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPD 220 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 ++L+ A D DI++ Y G E L++ L K+ Sbjct: 221 AIKALEIA----------------ARDKDIVIRVIPTKYPSGGEKQLIKILTNKEV---P 261 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNY 250 PA++G+ V NV S+ + + G + ++ +++G Sbjct: 262 AGGIPADIGV-----LVQNVGSLYSIKRAVIDGEPVVN----------RVVTLTGKTFKQ 306 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P V + EL+E+ L +I GG + Sbjct: 307 PRNVWALLGTPVHELLEEFGY---KADKKLPRLILGGPMMGF------------------ 345 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGI 369 L A V + S I+ R +E C +C+ C E ++ + ++ Sbjct: 346 ---TLPHANVPITKTSNCILAPTRREISPSTYEMECIRCSACAEACP--ASLLPQQLQWH 400 Query: 370 AQKREIDLLYEVSKNIEG 387 A+ E+D E+ NI+ Sbjct: 401 AKANELDKCEEL--NIKD 416 >gi|89092705|ref|ZP_01165658.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92] gi|89083217|gb|EAR62436.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92] Length = 1047 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 55/344 (15%), Positives = 117/344 (34%), Gaps = 64/344 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 ++ + +++ ++ G+ G GGAGF T +K + LV+NA E EP Sbjct: 114 QGLEDYQSISKQELLDFIRFRGISGMGGAGFPTDVKLHL---GDDHIVNTLVINAMECEP 170 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +MR +++G I + + H I + +++ AV E Sbjct: 171 YITADDMLMREHADQVVKGIEIIAHLLKPHHVMIGTEDNKPQAIRAMEQAVAESK----- 225 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 +DI + Y G E L++ L G + PA+VG+ Sbjct: 226 ---------LDIDIIVVPTVYPSGGEKQLIKLLTGVEV---PSGKIPADVGI-----VCQ 268 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV + + + + G S ++ +++G + +P + + + L++ Sbjct: 269 NVGTASAIYDAVYNGVPLIS----------RIVTLTGDALGHPHNMRALIGTPLETLLQA 318 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 L ++ GG + + + ++ ++ + Sbjct: 319 A----EVKDKELYRLVIGGPMMGF---------------------TVDSQSIPMIKTTNC 353 Query: 329 IIKAIWRLSVFY-KHESCGQCTPCREGTG--WMMRVMERLVKGI 369 +I A + C +C C + + + + KG Sbjct: 354 VIAATYDEMPPAPAANPCIRCGMCEQVCPAELLPQQLHWFAKGK 397 >gi|325661148|ref|ZP_08149775.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472655|gb|EGC75866.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium 4_1_37FAA] Length = 438 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 89/265 (33%), Gaps = 41/265 (15%) Query: 29 WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 W V + + ++ I+N + +G+ G GGAGF T +K S ++ Y++ N E E Sbjct: 110 WREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS---PKEPEKIEYIIANCAECE 166 Query: 89 PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148 P D M P L+ G + + E L+ Sbjct: 167 PYITADYRRMLETPEKLVGGMKVVLQLFENAKGIFGIEDNKPDCIEKLKE---------- 216 Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208 L + + V Y G E L+ + + + PA+ G V Sbjct: 217 LTKDEP-----RMEVKVLQTKYPQGAERQLIYATTKRAINSSM---LPADAG-----CIV 263 Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267 +NVE++ + G Y ++ ++SG V P ++ ELIE Sbjct: 264 DNVETLIAIYEAAISGKPLY----------ERVVTVSGDAVKEPGNFLAPCGMSQMELIE 313 Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPC 292 G VI GG + Sbjct: 314 MAGG----FEGVPEKVISGGPMMGF 334 >gi|332297502|ref|YP_004439424.1| Electron transport complex protein rnfC [Treponema brennaborense DSM 12168] gi|332180605|gb|AEE16293.1| Electron transport complex protein rnfC [Treponema brennaborense DSM 12168] Length = 467 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 110/352 (31%), Gaps = 54/352 (15%) Query: 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 ++ + ++ +G+ G GGA F T +K + + Y++ NA E EP D Sbjct: 137 FACSKEEALTRIREAGIVGMGGAAFPTHVK---LNPPAGKKIEYVLANAAECEPYLTIDE 193 Query: 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 M P LI+G IA GA + + L+ + + Sbjct: 194 RTMIETPQKLIDGLAIAMNVTGAAHGIVVLEDNKKHVYPVLEKTIADA------------ 241 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 GY I + Y G E + + G++ PA+VG ++NV ++ Sbjct: 242 GYTDTIGIVLCKTKYPQGGEKNITVAAVGREI---PAGGLPADVG-----CVIDNVGTLC 293 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275 + R G +RG + G P ++ + +LI Sbjct: 294 AISEAFREGKPLV-------DRGLTI--SGGACETPKNLKVPVGTLVGDLI----PANVT 340 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG----------LKEMGSGLGTAAVIVMDR 325 + +I GG + + G L + +G I + Sbjct: 341 LRPGVAKIISGGPMMGFAMTNANFPVAKNTSGVLFLTAGETYLADENPCIGCGKCIDVCS 400 Query: 326 STDIIKAIWRLSVFYKHES--------CGQCTPCREGTGWMMRVMERLVKGI 369 I R +E C +C C +R+++R G Sbjct: 401 CRLAPVLIVRALKAGDYEEAKRYGLMDCVECGTCGYICPAHVRLIQRFRIGK 452 >gi|153814812|ref|ZP_01967480.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756] gi|317500331|ref|ZP_07958556.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089660|ref|ZP_08338559.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847843|gb|EDK24761.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756] gi|316898272|gb|EFV20318.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|330405028|gb|EGG84566.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium 3_1_46FAA] Length = 439 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 89/257 (34%), Gaps = 41/257 (15%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E R+ II + +G+ G GGAGF T +K S ++ Y++ N E EP D Sbjct: 118 EMTREEIIERIGEAGIVGMGGAGFPTRVKLS---PKEPEKIEYIIANCAECEPYITADYR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M L+ G I V E L N + Sbjct: 175 RMLENTGQLVNGMRIILSLFPNAKGIFAVEDNKKDCIEKL---------------NKETE 219 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D ++ V Y G E L+ ++ + + PA+ G V+NVE++ Sbjct: 220 NDPNMEVKALMTKYPQGAERQLIYAVTKRAINSSM---LPADAG-----CIVDNVETLIG 271 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ ++SG +N P + + ELIE GG Sbjct: 272 IHMAVAEG----------KPLTERVVTVSGDAINSPGNFKVLLGTNHMELIE-AAGGFSQ 320 Query: 276 GWDNLLAVIPGGSSVPC 292 + L I GG + Sbjct: 321 QPEKL---ISGGPMMGF 334 >gi|261867803|ref|YP_003255725.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413135|gb|ACX82506.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 745 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 59/408 (14%), Positives = 122/408 (29%), Gaps = 81/408 (19%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 ++ L + ++ L + + +I ++ +G+ G GGA F T K Sbjct: 107 TCVHIKADGLDQWREQ---TPLEDFLSQTPEQLIEKIYQAGIAGLGGAVFPTAAK----I 159 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + L++N E EP D +MR +IEG I + + I V Sbjct: 160 HSAEKQVKLLIINGAECEPYITCDDRLMRDYADEIIEGVRILRYILRPEKVVIAVEDNKP 219 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 + +SL+ A+ DI + Y G L++ L G + Sbjct: 220 KAVKSLERALHGAN---------------DIEIRVIPTKYPSGAAKQLIQVLTGMEV--- 261 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VN 249 + +G+ + N+ + + + ++ +++G + Sbjct: 262 PSGQRSSGIGV-----LMQNIGTAFAIKRAVMDDEPLI----------ERVVTLTGDKIA 306 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 L+ + +D+ V GG + + A M Sbjct: 307 DKGNYWARFGTPIYHLLRETG----YQYDDRFPVFMGGPMMGFILPD--LNAPMTKVT-- 358 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG--WMMRVMERLV 366 ++ + E +C +C+ C + M + + Sbjct: 359 -----------------NCLLAPDHFEYAPSEEEKNCIRCSACSDACPVKLMPQQLYWFA 401 Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411 + ++ + Y + IE C A+ LI+ FR Sbjct: 402 RSEDHEKSEE--YSLKDCIE----CG---VCAYVCPSHIPLIQYFRRE 440 >gi|260655573|ref|ZP_05861061.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella anthropi E3_33 E1] gi|260630021|gb|EEX48215.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella anthropi E3_33 E1] Length = 439 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 58/338 (17%), Positives = 108/338 (31%), Gaps = 50/338 (14%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 I I + +K +G+ G GGAGF T +K + D+ L++NA E EP Sbjct: 114 DIESLDPATIRDVIKNTGIVGMGGAGFPTFIKLTPPKDAVVDQ---LIINASECEPYLTC 170 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 D ++ +P +++G + + Q +D Sbjct: 171 DYRLILEDPQPIMDGIRALLVLFPEAKLSVGIEDNKPEAIAKFQVLLD------------ 218 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 G+D + Y G E L+ ++ G+ P PA+VG V N + Sbjct: 219 --GFDERASLKVLKSKYPQGGEKQLIYAITGRSVPP---GKLPADVG-----AIVCNTYT 268 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 + LR G ++ ++SG + P + I+ E+++ G Sbjct: 269 TYDIGYALRHG----------RTSLKRIITVSGDAIANPGNYRVPLGISVREVLDAAGGF 318 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGA------------IMDYDGLKEMGSGLGTAAV 320 L G S+ L ++G + G + + Sbjct: 319 TAEPMKLLAGGPMMGMSLHSLDVPVVKGTSGLLALTAAALKVRPETRCIRCGRCIEACPM 378 Query: 321 IVMDRSTDIIKAIWRLSVFYKHE--SCGQCTPCREGTG 356 ++ + D + + F +C +C C Sbjct: 379 GLLPSALDAVVRLQDYKAFQARGGMNCIECGACTYSCP 416 >gi|328474563|gb|EGF45368.1| electron transport complex protein RnfC [Vibrio parahaemolyticus 10329] Length = 907 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 119/346 (34%), Gaps = 64/346 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QESADTLIDIIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ LI+G I + I + ++L++A Sbjct: 186 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 230 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLYS 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G P V + L+++ Sbjct: 282 IKRAIIDGEPMI----------ERVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L + A ++ + I A Sbjct: 329 ADKKLQRLIMGGPMMGF--------------TLPHSQVPITKTANCILAPTRHEISAHQY 374 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381 C +C C E ++ + ++ A+ E D L E+ Sbjct: 375 EME------CIRCGQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412 >gi|295092330|emb|CBK78437.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium cf. saccharolyticum K10] Length = 441 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 107/337 (31%), Gaps = 76/337 (22%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + + ++ I +K +G+ G GGAGF T +K + D ++VN E Sbjct: 112 GFGEKRDYTKLSKEEIRGIIKDAGIVGLGGAGFPTHVKLTPKDDAAID---TVIVNGAEC 168 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +M +P +I G + I + + + V + Sbjct: 169 EPYLTSDYRLMMEQPEKIIGGLKVILQLFDNAKGVIGIENNKPEAIKKITEMVKD----- 223 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 + I V Y G E L+ ++ ++ + PA+ G Sbjct: 224 ----------EPRIEVCPLLTKYPQGGERTLIYAVTKREINSSM---LPADAG-----CV 265 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 V+N++++ + + K+ +++G + P E + +++ L+ Sbjct: 266 VDNIDTVVSIYNAVCESTPLIR----------KIITVTGDAIANPQNFEVRLGTSYNRLV 315 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 E G + +I GG +G A + Sbjct: 316 EAAGG----FKEQPEKMISGGP-------------------------MMGQA---LFSTE 343 Query: 327 TDIIKAIWRLSVFYKHE-------SCGQCTPCREGTG 356 + K L+ F K E C +C C + Sbjct: 344 FPVAKTSSALTTFTKDEVAAQAPSPCIRCGRCVDVCP 380 >gi|297578621|ref|ZP_06940549.1| electron transport complex protein RnfC [Vibrio cholerae RC385] gi|297536215|gb|EFH75048.1| electron transport complex protein RnfC [Vibrio cholerae RC385] Length = 862 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 60/322 (18%), Positives = 104/322 (32%), Gaps = 64/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + + ++ ++ +G+ G GGAGF T K + R L++NA E EP D Sbjct: 130 QLSPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRSEILIINAAECEPYITADDV 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +MR H +I+G I + I + +LQ A Sbjct: 186 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVTALQQAAQ--------------- 230 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D +++ Y G E L++ L + K PA++GL V NV S+ Sbjct: 231 -DKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G P V + L+ + Sbjct: 282 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L A V + + I+ Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 367 Query: 336 LSVFYKHE-SCGQCTPCREGTG 356 +E +C +C C E Sbjct: 368 ELTSSDNEMACIRCGQCAEACP 389 >gi|91202359|emb|CAJ75419.1| conserved hypothetical iron sulfur protein [Candidatus Kuenenia stuttgartiensis] Length = 446 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 107/314 (34%), Gaps = 64/314 (20%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 + I V ++G+ G GGA F T +K + D +V+N E EP D +M Sbjct: 129 TPEEIRQRVFSAGIVGLGGATFPTHVKLTPPKDKTID---TIVMNGAECEPYLTCDHYVM 185 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 R+ + ++EG + IG A I + E L N+ G D Sbjct: 186 RNNANEVLEGLRLVMKCIGCKKAHIGIEANKKDVYE--------------LLKNTLAG-D 230 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 I + Y G E L+++L ++ +P P G V NV + + Sbjct: 231 PSIKIDLLEVKYPQGAEHQLIKALLRREFKPT---QLPMEAG-----AVVINVATAFAIN 282 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 ++ + ++ +++G+ VN P + + +L+E + Sbjct: 283 NAVKY----------KRPLIERIITVTGNGVNKPQNLRVRIGTPVRDLLEITGTSVGLNK 332 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 +I GG + + + GT ++V+ Sbjct: 333 -----IIFGGPMMGI-----------AQGSIDNAVTIKGTGGILVLKNQP---------- 366 Query: 338 VFYKHESCGQCTPC 351 Y+ +C +C C Sbjct: 367 -HYESHACIRCGRC 379 >gi|158520323|ref|YP_001528193.1| electron transport complex, RnfABCDGE type, C subunit [Desulfococcus oleovorans Hxd3] gi|158509149|gb|ABW66116.1| electron transport complex, RnfABCDGE type, C subunit [Desulfococcus oleovorans Hxd3] Length = 454 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 114/333 (34%), Gaps = 66/333 (19%) Query: 27 GHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85 G W +K I+E + A+G+ G GGA F T +K + L++N Sbjct: 126 GDW--PKDAADKHDPKAISEAISAAGIVGLGGAAFPTHVK---IMPNDKRPVDALLINGC 180 Query: 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145 E EP D IM +I G ++A A+GA + + + E++ A Sbjct: 181 ECEPFLTPDYRIMVEAADAVICGALLAGRAVGAKQIVVGIEANKPKAVEAMTRAAQ---- 236 Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205 G V I V Y G E L+ ++ +K P P VG Sbjct: 237 ----------GTAVKIAV--LKTKYPQGSEKHLIMAVMKRKVPP---GKLPLEVG----- 276 Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDE 264 V+NV ++ V + R+ ++ ++ G + P + + I++ E Sbjct: 277 AAVSNVGTVVAVARAVL----------RKKPLTHRVVCVTGGGIVQPKNLLVPIGISYGE 326 Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324 LIE CGG+R ++ GG + G + V V+ Sbjct: 327 LIE-FCGGLR---PEAARIVSGGPMMGFAFTDMEMPVT------------KGASGVTVLT 370 Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357 R + +C +C C + Sbjct: 371 RDD---------VKKAEETACVRCGRCVDVCPL 394 >gi|110799068|ref|YP_696102.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium perfringens ATCC 13124] gi|110673715|gb|ABG82702.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium perfringens ATCC 13124] Length = 436 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 104/329 (31%), Gaps = 64/329 (19%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 +N+ E ++ VK G+ G GGA F +K + Y+++NA E EP Sbjct: 111 ENLKYSSELSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M +I G I +I + + + + Sbjct: 168 YLTCDHRVMLEYTEEIISGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 S LG D I V Y G E L+ +L + P ++G V Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQV---PSGKLPLDIG-----CIVF 264 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 NV +I + L G ++ +++G + P + + ++IE Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRSPKNLRVKIGTPVKDIIE- 313 Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328 CGG + +I GG + A + GT+ ++ + + D Sbjct: 314 FCGGFINKPNK---IILGGPMMG--TAINSLDLPITK----------GTSGILCLSKVDD 358 Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGW 357 + C +C C Sbjct: 359 -----------FPKSHCIRCGKCLNSCPM 376 >gi|217077952|ref|YP_002335670.1| electron transport complex protein RnfC [Thermosipho africanus TCF52B] gi|217037807|gb|ACJ76329.1| electron transport complex protein RnfC [Thermosipho africanus TCF52B] Length = 438 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 115/360 (31%), Gaps = 73/360 (20%) Query: 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75 L + G ++ K + +++ ++ +G+ G GGA F T +K + D Sbjct: 106 DDWEL---LPHGDFEKFSK------EELLDIIQKAGIVGLGGAMFPTHIKLNPPKDKKID 156 Query: 76 RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135 L++N E EP D +M + ++ G I + +I + I Sbjct: 157 ---TLIINGAECEPYLTIDHRMMLEKHEEILLGIEIVKKILNVKNVYIGIEDNKIDAIN- 212 Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 L ++ G + V Y G E L+ ++ K+ PR Sbjct: 213 -------------LLNDKWRG---KVTVVPLKTKYPQGAEKQLIYAVT-KRSVPRGG--L 253 Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255 P +VG+ V NV ++ + + G RG L + P Sbjct: 254 PLDVGV-----VVQNVSTMYAIKEAVIDGKPLME-------RGLTLTG--EAIKKPGNWW 299 Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315 + +++ G + G + + V+ GG + +P + I+ Sbjct: 300 IRIGTPISWIVDNLGEGFKEGLEEIK-VLMGGPMMG-IPINNIETPIV-----------K 346 Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKR 373 G + + K C +C+ C ++ +++ L K Sbjct: 347 GNNGITSIVPHEQ------------KSTFCIRCSYCVNVCPMGLQPYLLDLLGKKKRYDE 394 >gi|323492348|ref|ZP_08097501.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG 20546] gi|323313395|gb|EGA66506.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG 20546] Length = 728 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 65/348 (18%), Positives = 119/348 (34%), Gaps = 67/348 (19%) Query: 11 NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70 ++ + R W + + ++ D +I +++ +G+ G GGAGF T K Sbjct: 107 TCIVIEPDFADTWLERETWPDFE---QRTPDELIEKIRQAGVSGMGGAGFPTAKK----I 159 Query: 71 KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130 + R L++NA E EP D +MR +I+G I + I + Sbjct: 160 QSGLARTEILIINAAECEPYITADDVLMREHADEIIKGIEIVEHILKPKLTVIGIEDNKP 219 Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190 ++LQ A + D DII+ Y G E L++ L K+ Sbjct: 220 EAVKALQQAAE----------------DKDIIIRVIPTKYPSGGEKQLIKILTNKEV--- 260 Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VN 249 PA++G+ V NV S+ + + G + ++ +++G Sbjct: 261 PNGGIPADIGI-----LVQNVGSLQAIKRAVCDGEALV----------ERVVTLTGDTFQ 305 Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309 P V + L+++ L +I GG + Sbjct: 306 QPRNVWTLIGTQVQALLDEFGY---QADKRLPRLIMGGPMMGF----------------- 345 Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356 L + V + S I+ + ++E +C +C C E Sbjct: 346 ----TLPHSQVPITKTSNCILAPTRKEISPNQYEMACIRCGQCAEACP 389 >gi|84393396|ref|ZP_00992155.1| electron transport complex protein RnfC [Vibrio splendidus 12B01] gi|84376005|gb|EAP92894.1| electron transport complex protein RnfC [Vibrio splendidus 12B01] Length = 967 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 70/378 (18%), Positives = 133/378 (35%), Gaps = 71/378 (18%) Query: 12 LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71 ++ L + + + V+ K D +++ ++ +G+ G GGAGF T K + Sbjct: 108 CVVIKPDGLDTWIDK---NPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----Q 160 Query: 72 VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131 R L+VNA E EP D +++ +++G + + I + Sbjct: 161 SGLGRTDILIVNAAECEPYITSDDKLLQEHAEEVLKGIEVVEHILQPKLTVIGIEDNKPD 220 Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191 ++L+ A D DI++ Y G E L++ L K+ Sbjct: 221 AIKALEIA----------------AKDKDIVIRVIPTKYPSGGEKQLIKILTNKEV---P 261 Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNY 250 PA++G+ V NV S+ + + G + ++ +++G Sbjct: 262 AGGIPADIGV-----LVQNVGSLYSIKRAVIDGEPVVN----------RVVTLTGKTFKQ 306 Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310 P V + EL+E+ L +I GG + Sbjct: 307 PRNVWALLGTPVHELLEEFGY---KADKKLPRLILGGPMMGF------------------ 345 Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGI 369 L A V + S I+ R +E C +C+ C E ++ + ++ Sbjct: 346 ---TLPHANVPITKTSNCILAPTRREISPSTYEMECIRCSACAEACP--ASLLPQQLQWH 400 Query: 370 AQKREIDLLYEVSKNIEG 387 A+ E+D E+ NI+ Sbjct: 401 AKANELDKCEEL--NIKD 416 >gi|88799939|ref|ZP_01115511.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea sp. MED297] gi|88777370|gb|EAR08573.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea sp. MED297] Length = 601 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 55/358 (15%), Positives = 113/358 (31%), Gaps = 53/358 (14%) Query: 14 GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73 ++ L D + W++ K + ++ + G+ G GGAGF T +K + Sbjct: 110 AIEADGLDDWRKQTPWEDWA---SKTHEELLQRIHDGGITGLGGAGFPTDIK----YRNR 162 Query: 74 SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133 L++NA E EP D +MR ++ G I +GA I + Sbjct: 163 HAPIDTLLINAAECEPYITADDRLMRERAEDILRGAQICLHLLGARRILIGIEDNKPEAA 222 Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 +L+ A + I + Y G E L++ + GK+ K Sbjct: 223 TALEQAAETLQQ--------------RIELAVVPTKYPSGGEKQLIQLVTGKEV---PKG 265 Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253 P+++G+ NV ++ + + S V+ P Sbjct: 266 GLPSDLGI-----VCQNVGTLYQIYRTVVHDEPLISRITT---------VTGAAVSNPGN 311 Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM-- 311 E + + + ++ ++ ++ G +VP + A M+ K+ Sbjct: 312 YEVLIGTSMETVLNHAGAHLKKADRVIMGGPMMGFAVPDIAAPIMKSTNCLLAPTKKELP 371 Query: 312 GSGLGTAAV-IVMDRSTDIIKAIWRLSVFYKH------------ESCGQCTPCREGTG 356 + + + + + + + + E C +C C Sbjct: 372 PAIEDSPCIRCGLCEQACPVDLLPQQMHWASKHRELESAELHSLEDCIECGACAYVCP 429 >gi|227498875|ref|ZP_03929015.1| electron transport complex protein [Acidaminococcus sp. D21] gi|226904327|gb|EEH90245.1| electron transport complex protein [Acidaminococcus sp. D21] Length = 447 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 70/352 (19%), Positives = 127/352 (36%), Gaps = 52/352 (14%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E D I ++ G G GGA F T +K+ PK + +++N E EP D Sbjct: 112 EITPDVIRTALREGGSVGLGGATFPTAVKY-APPKEGARPIDTILLNGIECEPFITGDHR 170 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 IM +I+G A GA I + ++ V Sbjct: 171 IMLEWADEMIQGLKYFMMASGAQKGIIGIEDNKPDAIALVKEKVAS-------------- 216 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + +I V A Y G E L+ + G+ R PA+VG+ V+NV + Sbjct: 217 -EPNIEVCVCAEKYPEGSEKHLIYAATGRTVPDRG---LPADVGV-----IVDNVGTAVA 267 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 ++++ Y ++ +ISG VN P + + + +E GG++G Sbjct: 268 CYRMVKKNIPLY----------ERVTTISGDGVNKPGNYICRLGTLYSDAVELAAGGLKG 317 Query: 276 GW-DNLLAVIPGGSSVPCL--PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD---- 328 + + G S P L P + GA++ ++ + + + R D Sbjct: 318 TPGKFISGGMMMGFSTPSLDYPIAKWSGAVLIFNSESPFAQYVEPSPCVHCARCVDACPM 377 Query: 329 ------IIKAIWRL----SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370 I++A+ R + + +C +C C + +++ + G Sbjct: 378 KLEPTEIVQAVKRQNWEEAERFSCHACVECGSCAFVCPAHIPLVQYIRMGKQ 429 >gi|261253563|ref|ZP_05946136.1| electron transport complex protein RnfC [Vibrio orientalis CIP 102891] gi|260936954|gb|EEX92943.1| electron transport complex protein RnfC [Vibrio orientalis CIP 102891] Length = 881 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 65/353 (18%), Positives = 125/353 (35%), Gaps = 68/353 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I +++ +G+ G GGAGF T K + R L++NA E EP D Sbjct: 130 QRTPDELIEKIRLAGVSGMGGAGFPTAKK----IQSGLARTEILIINAAECEPYITADDM 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +MR +I+G + + I + ++LQ A + Sbjct: 186 LMREHADEIIQGIEVVEHILKPKLTVIGIEDNKPEAVKALQHAAEH-------------- 231 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 232 --KDIVIRVIPTKYPSGGEKQLIKILTDKEV---PNGGIPADIGI-----LVQNVGSLYA 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G + ++ +++G P V + L+++ Sbjct: 282 IKRAVVDGEALVD----------RIVTLTGDTFKQPRNVWSLLGTPVQSLLDEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L + V + S I+ + Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHSQVPITKTSNCILAPTRK 367 Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387 ++E +C +C C E ++ + + ++ E+D E+ NI+ Sbjct: 368 EISPNQYEMACIRCGQCAEACP--ASLLPQQLLWHSKAEELDKCEEL--NIKD 416 >gi|283796033|ref|ZP_06345186.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium sp. M62/1] gi|291076241|gb|EFE13605.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium sp. M62/1] Length = 441 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 108/340 (31%), Gaps = 76/340 (22%) Query: 25 SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84 + + + ++ I +K +G+ G GGAGF T +K + D ++VN Sbjct: 109 AAEGFGEKRDYTKLSKEEIRGIIKDAGIVGLGGAGFPTHVKLTPKDDAAID---TVIVNG 165 Query: 85 DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144 E EP D +M +P +I G + I + + + V + Sbjct: 166 AECEPYLTSDYRLMMEQPEKIIGGLKVILQLFDNAKGVIGIENNKPEAIKKITEMVKD-- 223 Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204 + I V Y G E L+ ++ ++ + PA+ G Sbjct: 224 -------------EPRIEVCPLLTKYPQGGERTLIYAVTKREINSSM---LPADAG---- 263 Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFD 263 V+N++++ + + K+ +++G + P E + +++ Sbjct: 264 -CVVDNIDTVVSIYNAVCESTPLIR----------KIITVTGDAIANPQNFEVRLGTSYN 312 Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 L+E G + +I GG +G A + Sbjct: 313 RLVEAAGG----FKEQPEKMISGGP-------------------------MMGQA---LF 340 Query: 324 DRSTDIIKAIWRLSVFYKHE-------SCGQCTPCREGTG 356 + K L+ F K E C +C C + Sbjct: 341 STDFPVAKTSSALTTFTKDEVAAQEPTPCIRCGRCVDVCP 380 >gi|219854503|ref|YP_002471625.1| hypothetical protein CKR_1160 [Clostridium kluyveri NBRC 12016] gi|219568227|dbj|BAH06211.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 458 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 99/321 (30%), Gaps = 61/321 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + I++ ++ +G+ G GGA F + +K S + + ++N E EP D Sbjct: 124 DLSDKDIMSIIREAGIVGMGGATFPSHVKLS---PPADKKVEFFILNGAECEPYLTSDYR 180 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M ++ G I + A F+ + E ++ A + G Sbjct: 181 SMLEYTDRIVSGVKIIMKILKAEQGFVGIEDNKKDAIEVMEKAFE------------GTG 228 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + V Y G E L++ L G++ P +VG V NV + Sbjct: 229 ----VQVVALPTKYPQGAEKMLIKVLTGREV---PSGRLPMDVG-----AVVQNVGTCIA 276 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V + +G G + P + + TF + CGG + Sbjct: 277 VSDAVEKGIPLIQRVTTL---------SGGALKEPKNLLLRIGTTFKYAV-DLCGGFKET 326 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + V+ GG + A + G + ++ + S Sbjct: 327 P---VKVVMGGPMMGF--AQSNLEVPILK----------GVSGILSLSESD--------- 362 Query: 337 SVFYKHESCGQCTPCREGTGW 357 + +C +C C Sbjct: 363 ANTGTETACIRCGRCFNACPM 383 >gi|153953889|ref|YP_001394654.1| hypothetical protein CKL_1264 [Clostridium kluyveri DSM 555] gi|146346770|gb|EDK33306.1| RnfC [Clostridium kluyveri DSM 555] Length = 452 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 99/321 (30%), Gaps = 61/321 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + I++ ++ +G+ G GGA F + +K S + + ++N E EP D Sbjct: 118 DLSDKDIMSIIREAGIVGMGGATFPSHVKLS---PPADKKVEFFILNGAECEPYLTSDYR 174 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 M ++ G I + A F+ + E ++ A + G Sbjct: 175 SMLEYTDRIVSGVKIIMKILKAEQGFVGIEDNKKDAIEVMEKAFE------------GTG 222 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + V Y G E L++ L G++ P +VG V NV + Sbjct: 223 ----VQVVALPTKYPQGAEKMLIKVLTGREV---PSGRLPMDVG-----AVVQNVGTCIA 270 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276 V + +G G + P + + TF + CGG + Sbjct: 271 VSDAVEKGIPLIQRVTTL---------SGGALKEPKNLLLRIGTTFKYAV-DLCGGFKET 320 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 + V+ GG + A + G + ++ + S Sbjct: 321 P---VKVVMGGPMMGF--AQSNLEVPILK----------GVSGILSLSESD--------- 356 Query: 337 SVFYKHESCGQCTPCREGTGW 357 + +C +C C Sbjct: 357 ANTGTETACIRCGRCFNACPM 377 >gi|320537373|ref|ZP_08037328.1| electron transport complex, RnfABCDGE type, C subunit [Treponema phagedenis F0421] gi|320145838|gb|EFW37499.1| electron transport complex, RnfABCDGE type, C subunit [Treponema phagedenis F0421] Length = 473 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 96/314 (30%), Gaps = 53/314 (16%) Query: 39 GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98 ++ I ++ G+ G GGA F T +K S P D Y++ N E EP D M Sbjct: 119 TKEEAIARIRDCGICGMGGAAFPTHIKLSPPPNTKID---YVLANGAECEPYLTTDAATM 175 Query: 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 H +++G I + A I + L+ A+ + Sbjct: 176 YHSADDIVDGLSIVMHILSASKGIIVLEDNKTDLVPFLEKALAKLK------DRPDTSGS 229 Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218 DI + Y G E L+E + + P PF +G + NV ++ V Sbjct: 230 FDISIQLCKTKYPQGGEKNLVE-VATGRQIPSGGLPFS--IG-----CAIQNVGTLKAVS 281 Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277 R G + F++SG P + +LI Sbjct: 282 EAFRLGKPLID----------RPFTVSGDACKKPFNGVAPIGTCVGDLIPD----PIELD 327 Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 ++ +I GG + + T+ ++ + + Sbjct: 328 TGIIKIISGGPMMGMSMKNADFPIQKN------------TSGILFLTEKEASLD------ 369 Query: 338 VFYKHESCGQCTPC 351 + C +C C Sbjct: 370 ---QESPCIRCGRC 380 >gi|87118385|ref|ZP_01074284.1| electron transport complex protein RnfC [Marinomonas sp. MED121] gi|86166019|gb|EAQ67285.1| electron transport complex protein RnfC [Marinomonas sp. MED121] Length = 1251 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 59/327 (18%), Positives = 110/327 (33%), Gaps = 62/327 (18%) Query: 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91 ++ LE +++ + G+ G GGAGF T +K + H L++NA E EP Sbjct: 119 LENWLELPTADVVSHLAEMGIVGMGGAGFPTQVK---LAGATKHTIHELIINAAECEPYI 175 Query: 92 CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151 D ++R + LI+G + I A I + + L ++ A Sbjct: 176 TADDMLIREKTDALIKGIQVLQTLIEAQRTIIGIEDNKQTAIKLLTDEIERTKA------ 229 Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211 +I V Y G E L++ + GK+ PA++G+ NV Sbjct: 230 --------NIDVVVLPTKYPSGGEKQLIQLITGKEV---PSGQLPADIGV-----MCQNV 273 Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC-TVEESMSITFDELIEKHC 270 + + + +G +++ +++G VE + L+E Sbjct: 274 GTCVAIYDAIYQG----------KPLISRITTLTGDAMGQAQNVEVLLGTPISHLLEYA- 322 Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330 +L ++ GG + + V V+ S I+ Sbjct: 323 ---EFNPQHLERLVMGGPMMGFTISDNQ---------------------VPVVKTSNCIL 358 Query: 331 KA-IWRLSVFYKHESCGQCTPCREGTG 356 A L ++C +C C + Sbjct: 359 AASTKELPTPAPEQACIRCGMCEQACP 385 >gi|312883749|ref|ZP_07743469.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368599|gb|EFP96131.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC BAA-2122] Length = 645 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 109/322 (33%), Gaps = 64/322 (19%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 E+ + II +++ G+ G GGAGF T K + + L++NA E EP D Sbjct: 130 ERSPEEIIEKIRMLGISGMGGAGFPTAKK----VQSGLAKTEVLIINAAECEPYITADDM 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +MR LI+G I + I + +L+ A + Sbjct: 186 LMRTYADELIKGIEIVEHILKPKLTVIGIEDNKPEAIRALEIAAE--------------- 230 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 D DII+ Y G E L++ L + PA++G+ V NV S+ Sbjct: 231 -DKDIIIRVIPTKYPSGGEKQLIKILTNLEVPSNG---IPADIGI-----LVQNVGSLYA 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G ++ +++G+ P V + L+++ Sbjct: 282 IKRAVINGEPLV----------ERIVTLTGNTFKQPRNVWALLGTPVQSLLDEFGYTADK 331 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L I GG + L + V + S I+ R Sbjct: 332 KLPRL---IMGGPMMGF---------------------TLPHSQVPITKTSNCILAPTRR 367 Query: 336 LSVFYKHE-SCGQCTPCREGTG 356 ++E +C +C+ C + Sbjct: 368 EISSDQNEMACIRCSACADACP 389 >gi|325829764|ref|ZP_08163222.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella sp. HGA1] gi|325487931|gb|EGC90368.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella sp. HGA1] Length = 442 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 126/383 (32%), Gaps = 66/383 (17%) Query: 38 KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97 + + +K SGL G GGAGF T +K + D VVNA E EP D Sbjct: 122 TDQASFLAAIKKSGLVGLGGAGFPTDIKLAPPNLEEIDLY---VVNATECEPYLSTDYRE 178 Query: 98 MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157 M P ++ G +G A I + + E ++ L + Sbjct: 179 MMESPDDVLFGIRETCRHLGIPNAMICIESNKPKAIEIMRE----------LTKD----- 223 Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217 D I V Y G E L+ + G + PR K +VG+ +NNV ++A + Sbjct: 224 DSSIQVKSLPSRYPQGAENVLVHNATG-RVVPRGK--RQTDVGV-----MLNNVTTMASI 275 Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276 L+ G + F++SG + PC + +++E Sbjct: 276 GRFLKTGMPLVK----------RRFTVSGDAIARPCNANIIIGTRLRDVMEFAGLTKEPH 325 Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336 V+ GG + MDY +++ V+V + Sbjct: 326 K-----VVLGGPMMG------NAQIDMDYPVIRQ------NNGVLVFSKDA--------- 359 Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV-SKNIEGRTICALGD 395 +C +C C + + +K ++ L ++ + G C+ Sbjct: 360 MEQPATTACIRCGRCTNSCPMQLSPIA--IKKAYTVQDAKKLDDLMADLCMGCGTCSFVC 417 Query: 396 AAAWPIQGLIKNFRPLIEERIDQ 418 A P+ K R + + + Sbjct: 418 PAKQPLAQTSKLARDFMRAEMAR 440 >gi|90408374|ref|ZP_01216537.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3] gi|90310537|gb|EAS38659.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3] Length = 839 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 66/378 (17%), Positives = 140/378 (37%), Gaps = 72/378 (19%) Query: 22 DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 D++ R + N++K L ++ ++I+E++ +G+ G GGAGF T +K + Sbjct: 121 DALDR--YINIEKPLPYWQQSSHFLIDEIQKAGIVGLGGAGFPTHLKLK-----GHEATQ 173 Query: 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138 L++NA E EP D +M+ + +I G + + I + + E+L Sbjct: 174 LLLINAAECEPYISADDRLMQEHANEIIAGINVLQHILNPKLTIIAIEDNKPQAIEALTE 233 Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198 A++ II+ Y G E L+E + GK+ P + Sbjct: 234 ALNTTKNH--------------IIIRKIPTLYPSGSEKQLIEIITGKQTPI---GRHPTD 276 Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257 +G+ + N+ ++ + L G +++ +++G + V Sbjct: 277 LGI-----VMQNIGTVFAIKEALIDG----------KPLTSRIVTLTGDAIAKKGNVSVR 321 Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 + L++K+ VI GG + ++++ S + Sbjct: 322 IGTPIQYLLDKY----HFNPSADQKVIIGGPMMGF--------------TIQDLQSPITK 363 Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREI 375 ++ + + + ++C +C+ C + M + + K K+ + Sbjct: 364 KCNCILAPTIQEMPEAE------QEQACIRCSYCADACPVELMPQQLLWYAKNQDHKK-L 416 Query: 376 DLLYEVSKNIEGRTICAL 393 + Y +S IE ICA Sbjct: 417 EA-YNLSSCIECG-ICAF 432 >gi|241762604|ref|ZP_04760677.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753652|ref|YP_003226545.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241372799|gb|EER62503.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553015|gb|ACV75961.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 487 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 99/327 (30%), Gaps = 60/327 (18%) Query: 30 DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89 + I V +G+ G GGA F +K + +V+N E EP Sbjct: 114 EAYSDPFAVDPQLIRERVAWAGVVGLGGAAFPAAVKLE---QSSQKPIKMVVLNGAECEP 170 Query: 90 GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149 D +M+ +I G + + A+GA I + ++ A Sbjct: 171 YLTGDDRVMQEYADEVISGGRLIAHAVGAPKVVIGIERNKPEAIAIMKK---TAEAYD-- 225 Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209 ++ + Y G L+++L G + R A+VG+ V Sbjct: 226 ----------NVEIADLPAQYPVGSARHLVQALTGLEISART---RIADVGV-----LVQ 267 Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 NV + V R G S + G N P T++ + LI Sbjct: 268 NVGTARAVWRSARYGEPLISRIVTVSGGGM---------NDPKTLDAPIGSPVKALI-DF 317 Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 CGG+ + ++ GG + + GTA ++ + Sbjct: 318 CGGM---NEKAEQIVTGGPLMGVGLPNI--DVPV----------IKGTAGILALTSEE-- 360 Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTG 356 E+C +C C + Sbjct: 361 -------MDHRPTEACLRCGRCVDVCP 380 >gi|237809075|ref|YP_002893515.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] gi|237501336|gb|ACQ93929.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] Length = 483 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 63/328 (19%), Positives = 114/328 (34%), Gaps = 62/328 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 R+ +IN V+ +G+ G GGA F T K D L++N E EP D Sbjct: 112 TLSREEMINLVEEAGIVGMGGAMFPTSDKLRLSMHYLID---TLIINGSECEPYLTCDDR 168 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ + ++ G A FI + +++ A+ + Sbjct: 169 LMQEQGDRIMGGIRYLQQITLADKVFIGIEENKPEAIAAME-ALCKAEK----------- 216 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 ++ V Y G E L+E++ G++ A+VG+ V NV + Sbjct: 217 ---NMQVVGLPALYPMGSEKQLIEAVTGRQV---PSGKLSADVGV-----LVQNVATSIA 265 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + LR G ++ +ISG V P V + + E++ CGG++ Sbjct: 266 IFEALRFG----------RPLTHRVITISGDAVEVPSNVMAPVGMPISEIV-AQCGGLKS 314 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 ++ GG M AI D G+ + +++ + KA Sbjct: 315 TP---ARIVLGGP--------MMGRAITDIHAPVTKGT---SGVLLLTEDELPNPKA--- 357 Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVME 363 +C +C C + ++ Sbjct: 358 -------SACVRCGRCIGACPMSLTPLD 378 >gi|238916865|ref|YP_002930382.1| electron transport complex protein RnfC [Eubacterium eligens ATCC 27750] gi|238872225|gb|ACR71935.1| electron transport complex protein RnfC [Eubacterium eligens ATCC 27750] Length = 439 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 109/324 (33%), Gaps = 62/324 (19%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K + +D I+ +KA+G+ G GGAGF T +K S D Y++VN E EP Sbjct: 115 KFEDLTKDVILERIKAAGVVGMGGAGFPTNVKLSPKNPEAID---YIIVNGAECEPYLTS 171 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 D + E ++ G IA I + +Q A Sbjct: 172 DYRRLLEESDKVVMGLKIALKIFDHAKGIIGIEDNKPEAIRIMQEA-------------- 217 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + DI V Y G E +L+ + G+ + PA+ G V+NV++ Sbjct: 218 -TASEPDIEVKPLKTKYPQGGERSLIYATTGRAINSSM---LPADAG-----CIVHNVDT 268 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 I + + G ++ +++G V P + + +L++ G Sbjct: 269 IFSIYLSVIEG----------KPLTKRICTVTGDGVKEPGNFYVWLGTNYRQLLDAAGGP 318 Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332 + I GG + A + G+++++V + Sbjct: 319 VGEPEK----YISGGPMMGF--AMYSLDVPV----------VKGSSSLLVFQKD------ 356 Query: 333 IWRLSVFYKHESCGQCTPCREGTG 356 + +C +C C E Sbjct: 357 ---IVSKTTSSACIRCGKCGEACP 377 >gi|187934280|ref|YP_001885943.1| ethanolamine utilization Fe-S center protein eut [Clostridium botulinum B str. Eklund 17B] gi|187722433|gb|ACD23654.1| ethanolamine utilization Fe-S center protein eut [Clostridium botulinum B str. Eklund 17B] Length = 441 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 67/346 (19%), Positives = 118/346 (34%), Gaps = 75/346 (21%) Query: 60 FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119 F T +K + + Y++VN E EP D+ +M + L+ A Sbjct: 22 FPTHVKLNA-------KVEYVIVNGAECEPLLKVDQQLMAEKSSELLYALNKIVEQTEAT 74 Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179 I ++G++ ++L N KLG + + Y G+E + Sbjct: 75 KGVIALKGKYKSAMKNL---------------NEKLGEYPKLELFELGNFYPAGDEQITV 119 Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 + K+ P + P NVG+ V NVE++ V L Sbjct: 120 YEVT-KRVVP--EGGIPLNVGV-----IVINVETLLNVYNALE-----------GKPVTE 160 Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 K +I+G V P TV+ + I+ + +E G + ++ +I GG + L R Sbjct: 161 KFLTITGEVKNPITVKVPIGISVRQALELAGGTLIDEFE----IIDGGPMMGKLIEDINR 216 Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR---LSVFYKHESCGQCTPCRE--- 353 + T +IV+ +S +I+ + R + +C C+ C E Sbjct: 217 PIKKN------------TKGLIVISKSHNIVVSKKRNIQSMLKQARAACCHCSMCTEVCP 264 Query: 354 ----GTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICAL 393 G M R+ G K + + + C L Sbjct: 265 RHLLGHKLEPDKMMRIASYGGTCSKEILPTASFLC------SECGL 304 >gi|332993969|gb|AEF04024.1| electron transport complex protein RnfC [Alteromonas sp. SN2] Length = 866 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 108/331 (32%), Gaps = 69/331 (20%) Query: 28 HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 + VDK + I++ + +G+ G GGAGF T +K S +LV+N E Sbjct: 132 DYTGVDK------NTIVDAICQAGISGMGGAGFPTHIK-----TATSKPVEFLVLNGVEC 180 Query: 88 EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147 EP D +MR + +G I + I I + ++L A + A Sbjct: 181 EPYITADDRLMREHAWQIRQGLDILAHIIEPKAIVIAIEDNKPEAIQALNIACQDKDAY- 239 Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207 V Y G E L++ + G + PR PA++G+ Sbjct: 240 --------------RVVPIETKYPAGGEKQLIQVITG-REVPRNG--LPADIGV-----M 277 Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266 + NV + + + G ++ +++G V P + L+ Sbjct: 278 MFNVGTCFAIADAILHG----------KPLIERIVTVTGDAVAKPANFRALLGTPVKHLL 327 Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326 E+ + VI GG + L A + V+ + Sbjct: 328 EEASYQAKKQTSPK--VIMGGPMMGF---------------------ALADATIPVVKTT 364 Query: 327 TD-IIKAIWRLSVFYKHESCGQCTPCREGTG 356 ++ + L C +C+ C + Sbjct: 365 NCLLVPSKKELVDDNAERPCIRCSACADACP 395 >gi|269791957|ref|YP_003316861.1| electron transport complex, RnfABCDGE type, C subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099592|gb|ACZ18579.1| electron transport complex, RnfABCDGE type, C subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 445 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 110/323 (34%), Gaps = 61/323 (18%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 + D I ++ +G+ G GGA F T +K + P D +++N E EP D Sbjct: 119 DLPADEIRRIIREAGIVGMGGACFPTAVKLTPPPDKKVDH---VIINGAECEPYLTCDDR 175 Query: 97 IMRHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155 +MR ++ G IA + + + E+++ +D Sbjct: 176 LMRERGDRVLLGLQIALKLFPQGVKGVVALEDNKPKAIEAMRGYLDRLAIQ--------- 226 Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215 ++ V Y G E L+ ++ G++ PA+VG + NV + Sbjct: 227 ----NVTVQPVRTKYPQGAEKMLIYAVTGREV---PAGGLPADVG-----CIILNVRTAY 274 Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 + + ++ ++SG + P + + ++ ELIE CGG Sbjct: 275 AIWDAVVNRMPVID----------RIVTVSGDAIKEPKNLGVRLGMSVRELIE-ACGGFS 323 Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 L VI GG + A + GT+ ++ A+ Sbjct: 324 VEP---LKVIMGGPMMGV--ALSDLNVPV----------VKGTSGILAFSE------ALA 362 Query: 335 RLSVFYKHESCGQCTPCREGTGW 357 RL E+C +C C Sbjct: 363 RLGE---EENCIRCGKCVSTCPM 382 >gi|210623717|ref|ZP_03294001.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275] gi|210153405|gb|EEA84411.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275] Length = 447 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 135/384 (35%), Gaps = 69/384 (17%) Query: 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93 K+ + ++ I+ +K +G+ G GGA F T +K + ++++N E EP Sbjct: 115 KLEDLSKEEIVEIIKEAGIVGMGGATFPTHVK---VCPPPGSTAEFVILNGAECEPYLTA 171 Query: 94 DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153 D +M +P ++ GC + + FI + E++Q N Sbjct: 172 DHRLMLEQPEKVVLGCRALMKVLDVNKGFIGIEENKPDAIEAVQ--------------NV 217 Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213 + +I V Y G E L+ + G + P P A V+NV + Sbjct: 218 AKDFP-EIEVVTLKVKYPQGAEKQLIYACTG-REVPSGGLPIAAGA-------VVDNVGT 268 Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273 A + + G T + + P + + +E+I CGG Sbjct: 269 AAAIADAITTGMPLVERI-------TTVTGPC--IAEPKNLVTKIGTRVNEII-DQCGGY 318 Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333 + NL VI GG + E+ + G++ ++++ Sbjct: 319 K-EGTNLGKVIMGGPMMGF------------TQWHTEISTNKGSSGILLLTEEE------ 359 Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN--IEGRT-- 389 S + ++C +C C + ++ + L+ + K + D E + IE + Sbjct: 360 ---SRTPEMQNCIRCGRCTDVCPSFLQPL--LISAYSMKNDFDKAEEFNAMDCIECGSCS 414 Query: 390 -ICALGDAAAWPIQGLIKNFRPLI 412 IC A P+ I+ + I Sbjct: 415 FICP----ARRPLVQTIRTAKREI 434 >gi|156975237|ref|YP_001446144.1| electron transport complex protein RnfC [Vibrio harveyi ATCC BAA-1116] gi|156526831|gb|ABU71917.1| hypothetical protein VIBHAR_02966 [Vibrio harveyi ATCC BAA-1116] Length = 912 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 112/323 (34%), Gaps = 66/323 (20%) Query: 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96 ++ D +I+ ++ +G+ G GGAGF T K + R L+VNA E EP D Sbjct: 130 QESADALIDVIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 185 Query: 97 IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156 +M+ LI+G I + I + ++L+ A Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTIIGIEDNKPAAIKALEQA----------------A 229 Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216 + DI++ Y G E L++ L K+ PA++G+ V NV S+ Sbjct: 230 MNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGAIPADIGI-----LVQNVGSLYS 281 Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275 + + G + ++ +++G P V + L+++ Sbjct: 282 IKRAVIDGEPVVN----------RIVTLTGKTFKQPRNVWTLLGTPVQALLDEFGY---K 328 Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335 L +I GG + L A V + + I+ R Sbjct: 329 ADKKLQRLIMGGPMMGF---------------------TLPHAQVPITKTANCILA