RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F
[Candidatus Liberibacter asiaticus str. psy62]
         (425 letters)



>gnl|CDD|184170 PRK13596, PRK13596, NADH dehydrogenase I subunit F; Provisional.
          Length = 433

 Score =  909 bits (2352), Expect = 0.0
 Identities = 333/422 (78%), Positives = 365/422 (86%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGLQ  SL  +  RG WD    IL+KGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PH LIEGC+IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFIRERE+LQAA+DE Y +GL+G N    G+D DI VHHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGA+W++  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE+M I F ELIEKH GG+RGGWDNLLAVIPGGSSVP +PA Q  
Sbjct: 241 KLFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+VKG AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IEERIDQY
Sbjct: 361 RVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEERIDQY 420

Query: 420 HR 421
             
Sbjct: 421 TA 422


>gnl|CDD|178678 PLN03132, PLN03132, NADH dehydrogenase (ubiquinone) flavoprotein 1;
           Provisional.
          Length = 461

 Score =  717 bits (1851), Expect = 0.0
 Identities = 287/418 (68%), Positives = 338/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 33  LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 92

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 93  SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 152

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 153 YIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLE 212

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 213 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTK 272

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 273 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 332

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 333 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWD 392

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +
Sbjct: 393 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 450


>gnl|CDD|185547 PTZ00304, PTZ00304, NADH dehydrogenase [ubiquinone] flavoprotein 1;
           Provisional.
          Length = 461

 Score =  716 bits (1850), Expect = 0.0
 Identities = 294/426 (69%), Positives = 336/426 (78%), Gaps = 2/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY      +  ++ RG W     IL KG DWII+E+K SGLRGRGGAGF 
Sbjct: 22  LKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFP 81

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPKV  D RP YLVVNADESEPGTCKDR+IMRH+PH L+EG ++A FA+ A  
Sbjct: 82  SGLKWSFMPKVKPDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARA 141

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E  +LQ A+DE Y  G LG N+   GYD D+ VH GAGAYICGEETAL+
Sbjct: 142 AYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALI 201

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR NN GT
Sbjct: 202 ESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGT 261

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLL VIPGGSSVP +P     
Sbjct: 262 KLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICD 321

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LKE+ SGLGTAAVIVMD+STDII AI RLS FYKHESCGQCTPCREGT W++
Sbjct: 322 NVLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLV 381

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++MER V G A K EID L EVSK IEG TICALGDAAAWP+QGLI++FRP IEERI++Y
Sbjct: 382 KMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGDAAAWPVQGLIRHFRPEIEERIERY 441

Query: 420 HRCNFQ 425
              N  
Sbjct: 442 WEANPH 447


>gnl|CDD|131014 TIGR01959, nuoF_fam, NADH-quinone oxidoreductase, F subunit.  This
           model describes the F chain of complexes that resemble
           NADH-quinone oxidoreductases. The electron acceptor is a
           quinone, ubiquinone, in mitochondria and most bacteria,
           including Escherichia coli, where the recommended gene
           symbol is nuoF. This family does not have any members in
           chloroplast or cyanobacteria, where the quinone may be
           plastoquinone and NADH may be replaced by NADPH, nor in
           Methanosarcina, where NADH is replaced by F420H2.
          Length = 411

 Score =  697 bits (1801), Expect = 0.0
 Identities = 258/412 (62%), Positives = 306/412 (74%), Gaps = 3/412 (0%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMK 65
            + TNL   +  +L +   RG +D + K LE+   D II EVK SGLRGRGGAGF TG+K
Sbjct: 1   VLTTNLDNPESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLK 60

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK  S +P YLV NADESEPGTCKDRD+M  +PH LIEG +IA++AIGAH  +IY+
Sbjct: 61  WSFMPKDDSPKPKYLVCNADESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYI 120

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGEFI+E E+L+AA+ E YA+GLLG N    G+D ++ VH GAGAYICGEETALLESLEG
Sbjct: 121 RGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVHRGAGAYICGEETALLESLEG 180

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+GQPRLKPPFPA  GLYG PT +NNVE++A VP ILRRGA WY   G+E + GTKLFS+
Sbjct: 181 KRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN P   E  +     EL+E + GG+RGGW  L AVIPGGSS P LPA Q   A MD
Sbjct: 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMD 299

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD L   GS LGT AVIVMD ST ++KA+ RLS FY HESCGQCTPCREGTGWM++++ER
Sbjct: 300 YDSLAAAGSMLGTGAVIVMDESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILER 359

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +G   K +IDLL  V K IEG+TICALGDAAAWP+Q  IK+FR   E  I
Sbjct: 360 IEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKHFRDEFEAHI 411


>gnl|CDD|183071 PRK11278, PRK11278, NADH dehydrogenase I subunit F; Provisional.
          Length = 448

 Score =  336 bits (863), Expect = 8e-93
 Identities = 165/382 (43%), Positives = 230/382 (60%), Gaps = 6/382 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 49  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 108

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 109 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 168

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 169 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 228

Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           IL  G  WY    +    + GTKL   SG V  P   E     T  E++E + GG+R G 
Sbjct: 229 ILANGVEWYQNISKGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL 288

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L 
Sbjct: 289 -KFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLE 346

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    
Sbjct: 347 EFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 406

Query: 397 AAWPIQGLIKNFRPLIEERIDQ 418
           A  P+Q  IK FR   E  I Q
Sbjct: 407 AVEPLQSAIKYFREEFEAGIKQ 428


>gnl|CDD|151119 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F
           iron-sulfur binding region. 
          Length = 46

 Score = 76.4 bits (189), Expect = 1e-14
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           +    RL+ F+ HESCG+CTPCREGT W+  +++R+ +G   + ++
Sbjct: 1   VAVARRLAEFFAHESCGKCTPCREGTKWLAEILDRIEEGKGTEEDL 46


>gnl|CDD|162617 TIGR01945, rnfC, electron transport complex, RnfABCDGE type, C
           subunit.  The six subunit complex RnfABCDGE in
           Rhodobacter capsulatus encodes an apparent NADH
           oxidoreductase responsible for electron transport to
           nitrogenase, necessary for nitrogen fixation. A closely
           related complex in E. coli, RsxABCDGE (Reducer of SoxR),
           reduces the 2Fe-2S-containing superoxide sensor SoxR,
           active as a transcription factor when oxidized. This
           family of putative NADH oxidoreductase complexes exists
           in many of the same species as the related NQR, a
           Na(+)-translocating NADH-quinone reductase, but is
           distinct. This model describes the C subunit.
          Length = 435

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 57/264 (21%)

Query: 36  LEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           LE   D+       I+ +++A+G+ G GGA F T +K +  P+    +   L++N  E E
Sbjct: 110 LEPIPDFENLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPPE---KKIETLIINGAECE 166

Query: 89  PG-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           P  TC DR +MR     +I G  I    +G     I +         +L+ A+       
Sbjct: 167 PYLTCDDR-LMRERAEEIIGGIRILLKILGVKKVVIGIEDNKPEAIAALKKALG------ 219

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK---KGQPRLKPPFPANVGLYGC 204
                   GY++ + V      Y  G E  L+ +L G+    G        PA++G+   
Sbjct: 220 --------GYNIKVRVL--PTKYPQGGEKQLIYALTGREVPSGG------LPADIGV--- 260

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFD 263
              V NV +   +   +  G               ++ +++G  +  P  +   +     
Sbjct: 261 --VVQNVGTAFAIYEAVVNGKPLIE----------RVVTVTGDAIRRPKNLWVLIGTPVS 308

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGG 287
           +++   CGG R   +    +I GG
Sbjct: 309 DILA-FCGGFR---EKPERLIMGG 328


>gnl|CDD|179919 PRK05035, PRK05035, electron transport complex protein RnfC;
           Provisional.
          Length = 695

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIM 98
            + +I  ++ +G+ G GGAGF T +K    P    D+   L++N  E EP  T  DR +M
Sbjct: 127 PEELIERIRQAGIAGLGGAGFPTAVKLQ--PG--GDKIETLIINGAECEPYITADDR-LM 181

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFI 123
           R     +IEG  I +  +      I
Sbjct: 182 RERADEIIEGIRILAHLLQPKEVLI 206


>gnl|CDD|151080 pfam10531, SLBB, SLBB domain. 
          Length = 52

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293
           + ++SG V  P   E  +  T  +LIE+  G        L  VIPGG  +  L
Sbjct: 1   VVTVSGEVKRPGNYEVPIGTTLSDLIEQAGGLTDDA-RRLKRVIPGGPMMGIL 52


>gnl|CDD|178409 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein.
          Length = 426

 Score = 29.4 bits (66), Expect = 1.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC-----YASGLL 149
           L   C + S   GA  ++I V+GE +    S    VD C     YA+G+L
Sbjct: 312 LSHFCPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGIL 361


>gnl|CDD|181191 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
           Validated.
          Length = 647

 Score = 29.5 bits (67), Expect = 1.8
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 15/34 (44%)

Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           CG+C  CRE               I Q R +DL+
Sbjct: 73  CGECDNCRE---------------IEQGRFVDLI 91


>gnl|CDD|183453 PRK12338, PRK12338, hypothetical protein; Provisional.
          Length = 319

 Score = 29.3 bits (66), Expect = 2.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           + ++RL +   +K ++  LY +S N+    ICA
Sbjct: 261 KFIKRLNENPKKKEDLKRLYSLSNNVHSHRICA 293


>gnl|CDD|162683 TIGR02071, PBP_1b, penicillin-binding protein 1B.  Bacterial that
           synthesize a cell wall of peptidoglycan (murein)
           generally have several transglycosylases and
           transpeptidases for the task. This family consists of a
           particular bifunctional transglycosylase/transpeptidase
           in E. coli and other Proteobacteria, designated
           penicillin-binding protein 1B.
          Length = 730

 Score = 28.1 bits (63), Expect = 3.9
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 10/31 (32%)

Query: 226 SWYSGF----------GRENNRGTKLFSISG 246
           SW++G           GR++N  TKL   SG
Sbjct: 640 SWFAGIDGKEVTIIWLGRDDNGPTKLTGASG 670


>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
           Validated.
          Length = 451

 Score = 28.2 bits (63), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 342 HESCGQCTPCRE-GTGWMMRVMERLVKGIAQKREID 376
            E C QC  C+E  +G  + V+E  + G A  R I+
Sbjct: 72  QEPCNQCASCKEISSGTSLDVLE--IDG-ASHRGIE 104


>gnl|CDD|178499 PLN02911, PLN02911, inositol-phosphate phosphatase.
          Length = 296

 Score = 27.8 bits (62), Expect = 5.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 8/46 (17%)

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           +CYA GLL S    G+ VD++V  G   Y   +  AL+  +EG  G
Sbjct: 215 DCYAYGLLAS----GH-VDLVVESGLKPY---DYLALVPVVEGAGG 252


>gnl|CDD|185649 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
           Provisional.
          Length = 522

 Score = 27.8 bits (62), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           G ++ DS+       + K  ++GRDW+ N +K S   G G + F T
Sbjct: 111 GLTIIDSLDTLKIMGLKKEYKEGRDWVANNLKQSKDTGLGVSVFET 156


>gnl|CDD|149700 pfam08724, Rep_N, Rep protein catalytic domain like.
           Adeno-associated virus (AAV) Replication (Rep) protein
           is essential for viral replication and integration. The
           catalytic domain has DNA binding and endonuclease
           activity.
          Length = 186

 Score = 27.8 bits (62), Expect = 5.7
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 78  HYLV-VNADESEPGTCK-----DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
            +LV  NA    P  CK     ++       H LI G  +    +G + + I   G+F +
Sbjct: 57  IFLVKWNAKLKVPEGCKYFLQAEKGEEGFHLHVLIGGPGVNPRVLGRYTSQI--EGKFNK 114


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,067,435
Number of extensions: 459892
Number of successful extensions: 835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 21
Length of query: 425
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 329
Effective length of database: 3,920,105
Effective search space: 1289714545
Effective search space used: 1289714545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)