RPSBLAST alignment of GI: 254780858 and protein with PDBid: 3i9v

>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* Length = 438
 Score =  382 bits (983), Expect = e-107
 Identities = 189/422 (44%), Positives = 264/422 (62%), Gaps = 9/422 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  ++ ++      +L   +  G ++   ++L EK  D +I EVK SGLRGRGGAGF TG
Sbjct: 14  ERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTG 73

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSFMPK    + HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A   +I
Sbjct: 74  LKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYI 132

Query: 124 YVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVRGE+ R  + L+ A+ E  A G LG +     +  D+ VH GAGAYICGEETAL+ SL
Sbjct: 133 YVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSL 192

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG +  PRLKPPFPA  GL+G PTT+NNVE++A V  I+ RGA W++  G E ++G KL+
Sbjct: 193 EGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLY 252

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGA 301
            ISG V  P   E  M  TF ELI +  GG     + + A+IPGGSS P LP   ++   
Sbjct: 253 QISGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQAIIPGGSSTPPLPFTEEVLDT 309

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMR 360
            M Y+ L+  GS LGT  VI++     ++ A+W L+ FY HESCG+CTPCREG  G+M+ 
Sbjct: 310 PMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVN 369

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +++F+        +  
Sbjct: 370 LFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALARE-K 428

Query: 421 RC 422
           R 
Sbjct: 429 RP 430