RPSBLAST alignment of GI: 254780858 and protein with PDBid: 3i9v
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* Length = 438
Score = 382 bits (983), Expect = e-107
Identities = 189/422 (44%), Positives = 264/422 (62%), Gaps = 9/422 (2%)
Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
+ ++ ++ +L + G ++ ++L EK D +I EVK SGLRGRGGAGF TG
Sbjct: 14 ERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTG 73
Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A +I
Sbjct: 74 LKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYI 132
Query: 124 YVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESL 182
YVRGE+ R + L+ A+ E A G LG + + D+ VH GAGAYICGEETAL+ SL
Sbjct: 133 YVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSL 192
Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
EG + PRLKPPFPA GL+G PTT+NNVE++A V I+ RGA W++ G E ++G KL+
Sbjct: 193 EGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLY 252
Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGA 301
ISG V P E M TF ELI + GG + + A+IPGGSS P LP ++
Sbjct: 253 QISGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQAIIPGGSSTPPLPFTEEVLDT 309
Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMR 360
M Y+ L+ GS LGT VI++ ++ A+W L+ FY HESCG+CTPCREG G+M+
Sbjct: 310 PMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVN 369
Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
+ ++ G ++++++ L + IEGR+ C L DAA WP++G +++F+ +
Sbjct: 370 LFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALARE-K 428
Query: 421 RC 422
R
Sbjct: 429 RP 430