HHsearch alignment for GI: 254780859 and conserved domain: COG2080

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].
Probab=97.86  E-value=2.5e-05  Score=57.44  Aligned_cols=108  Identities=24%  Similarity=0.379  Sum_probs=77.1

Q ss_pred             CCCEEEEECCEEEE--ECCCCCHHHHHH-HCCCCCCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             61049999999999--688875889999-868954612-12799964560004799971798870200265664566376
Q gi|254780859|r    2 QMMVKLKVDGIEIE--VPSGFTILQACE-LAGAEIPRF-CFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGP   77 (700)
Q Consensus         2 ~~mv~~~Idg~~v~--v~~g~til~a~~-~~gi~IP~~-Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~   77 (700)
T Consensus         1 ~~~i~ltvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~------~g~CGACtVlvDG---~~v~SCl~~a~~-----   66 (156)
T COG2080           1 KMPITLTVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG------HGQCGACTVLVDG---EAVNSCLTLAVQ-----   66 (156)
T ss_pred             CCCEEEEECCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCC------CCCCCCEEEEECC---EEEHHHHHHHHH-----
T ss_conf             96179998995889975899829999998528877677888------7237950999999---584178899999-----


Q ss_pred             CCCCCEEEECCHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             668537981998999999--99999998278998877888788837998
Q gi|254780859|r   78 NGELPEVFTKSSMVKKAR--AGVMEFLLINHPLDCPICDQGGECDLQDQ  124 (700)
Q Consensus        78 ~~~g~~v~t~s~~v~~~r--~~vle~ll~nHpldCp~Cd~~GeC~LQd~  124 (700)
T Consensus        67 -~~G~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~l  114 (156)
T COG2080          67 -AEGAEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATAL  114 (156)
T ss_pred             -HCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             -579859974222678887578999999829975788848899999999