HHsearch alignment for GI: 254780859 and conserved domain: PRK05888
>PRK05888 NADH dehydrogenase subunit I; Provisional.
Probab=98.45 E-value=1.5e-07 Score=73.48 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCCCCCCCC-HHCCC---HHHCCCCCHHHHHHHHCCCCCCEEEECCCC-CCEEEECCCCCCCCCCCCCEE
Q ss_conf 8674777567787888560-21006---432901002364543206874003330666-412662058755565466222
Q gi|254780859|r 131 GSSRYSEEKRAVEDKSIGP-LVKTV---MNRCIHCTRCVRFITEVAGVSELGLVGRGE-NAEITTYLEQSLTSEMQGNII 205 (700)
Q Consensus 131 ~~~r~~~~k~~~~~~~~~p-~i~~d---~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~-~~~i~~~~~~~~~~e~~Gncv 205 (700)
T Consensus 29 vT~qYP~ek~~~~~r~RG~~~l~~d~~g~ekCi~C~lC~~~CP~--~~I~i~~~~~~~g~k~~~~~~Id~~rCifCGlCv 106 (172)
T PRK05888 29 VTIQYPEEKLPLSPRFRGRHALRRYPNGEERCIACKLCEAICPA--NAITIEAAEREDGRRRTTRYDINFGRCIFCGFCE 106 (172)
T ss_pred CHHCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCHHHHCCC--CCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 24009886476785523427764068887403577655655887--7678987508998577457775346057888822
Q ss_pred ECCCCCCCCCC
Q ss_conf 01212101223
Q gi|254780859|r 206 DLCPVGALTSK 216 (700)
Q Consensus 206 d~CPvGALt~k 216 (700)
T Consensus 107 e~CP~~AI~~t 117 (172)
T PRK05888 107 EACPTDAIVET 117 (172)
T ss_pred CCCCCCCCCCC
T ss_conf 10888724478