HHsearch alignment for GI: 254780859 and conserved domain: PTZ00305

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional.
Probab=100.00  E-value=0  Score=602.38  Aligned_cols=202  Identities=43%  Similarity=0.826  Sum_probs=194.2

Q ss_pred             EEEECCEEEEE-CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             99999999996-88875889999868954612127999645600047999717988702002656645663766685379
Q gi|254780859|r    6 KLKVDGIEIEV-PSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEV   84 (700)
Q Consensus         6 ~~~Idg~~v~v-~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v   84 (700)
T Consensus        70 ~~~~~~~~~~~~p~eeNLLeV~eraGI~IPrFCYH~~LsiaGnCRMCLVEVEG-~~klvaSCatpV~eGM--------~V  140 (297)
T PTZ00305         70 IMFVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDG-TQNLVVSCATVALPGM--------SI  140 (297)
T ss_pred             EEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCC--------EE
T ss_conf             89854887312577440999999859977766579998856763376999689-9888746376478998--------88


Q ss_pred             EECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHH
Q ss_conf             81998999999999999982789988778887888379989983898674777567787888560210064329010023
Q gi|254780859|r   85 FTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRC  164 (700)
Q Consensus        85 ~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RC  164 (700)
T Consensus       141 ~TnS~~VkkARk~VmEfLLiNHPlDCPICDqgGECdLQD~a~~yG~d~sRf~e~KR~V~dk~~GPlI~t~MtRCIhCTRC  220 (297)
T PTZ00305        141 ITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRC  220 (297)
T ss_pred             ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCHH
T ss_conf             64999999999999999996799768878878971447889984888400104764466566797100047746465242


Q ss_pred             HHHHHHCCCCCCEEEECCCCCCEEEECCCC-CCCCCCCCCEEECCCCCCCCCC
Q ss_conf             645432068740033306664126620587-5556546622201212101223
Q gi|254780859|r  165 VRFITEVAGVSELGLVGRGENAEITTYLEQ-SLTSEMQGNIIDLCPVGALTSK  216 (700)
Q Consensus       165 VR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~-~~~~e~~Gncvd~CPvGALt~k  216 (700)
T Consensus       221 VRF~~Evag~~~LGmiGRG~~seI~t~ld~~~~~~~~~~~v~~lcpvg~~~~~  273 (297)
T PTZ00305        221 VRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLG  273 (297)
T ss_pred             HHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCEEEC
T ss_conf             43077652760013120576530023344665520037856650555404555