HHsearch alignment for GI: 254780859 and conserved domain: TIGR02512
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only; InterPro: IPR013352 This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. These proteins represent a subdivision within a larger family which includes proteins such as nuclear prelamin A recognition factor in animals. These proteins show some heterogeneity in terms of periplasmic, cytosolic or hydrogenosomic location, NAD or NADP dependence, and overall protein length.; GO: 0005506 iron ion binding, 0008901 ferredoxin hydrogenase activity, 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=98.52 E-value=2.8e-08 Score=78.82 Aligned_cols=69 Identities=36% Similarity=0.601 Sum_probs=64.2
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC---CCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 1006432901002364543206874003330666412662058755---56546622201212101223323
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSL---TSEMQGNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~---~~e~~Gncvd~CPvGALt~k~~~ 219 (700)
T Consensus 2 ~~~~~~kc~~c~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~cgqc~~~c~~~~~~~~~~~ 73 (380)
T TIGR02512 2 IVRDMSKCILCGRCVRACTNVQIVGALGFLNRGGKTEVAPAFGRLLDESECISCGQCSLVCPVGAITEKDDV 73 (380)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 633431000111012110000100000001233321012110110111111234421012442100000012