HHsearch alignment for GI: 254780859 and conserved domain: TIGR03149
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=96.57 E-value=0.00084 Score=46.49 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCE-EEECCC-----CCCCCCCCC--CEEECCCCCCCCCCCCCCC
Q ss_conf 21006432901002364543206874003330666412-662058-----755565466--2220121210122332333
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAE-ITTYLE-----QSLTSEMQG--NIIDLCPVGALTSKPFAFT 221 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~-i~~~~~-----~~~~~e~~G--ncvd~CPvGALt~k~~~~~ 221 (700)
T Consensus 40 gmviD~~rCiGC~aC~~ACk~~N~~p~~~~~~~v~~~~~~g~~p~~~~~~~p~~C~HC~~p~C~~vCP~~A~~k~~~--- 116 (225)
T TIGR03149 40 GMVHDETACIGCTACMDACREVNKVPEGVSRLEIIRSEPYGEFPDVEYRFFRKSCQHCDNAPCVAVCPTGASFKDEE--- 116 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEECCC---
T ss_conf 99998873668389999998755899986517999825777789850568886788987945575588584177688---
Q ss_pred CCCCCEEEE-EE---CCCCCCCCCEEEE
Q ss_conf 444302352-20---1211688643667
Q gi|254780859|r 222 GRSWELTKT-DS---IDVMDALGSAIRI 245 (700)
Q Consensus 222 ~Rpwel~~~-~S---vC~~C~~GC~i~v 245 (700)
T Consensus 117 ---~GiV~vd~~~CiGC~~C~~aCPy~a 141 (225)
T TIGR03149 117 ---TGIVDVHKDLCVGCQYCIAACPYRV 141 (225)
T ss_pred ---CCEEEEEHHHCCCHHHHHHCCCCCC
T ss_conf ---8579975686940418986199998