HHsearch alignment for GI: 254780859 and conserved domain: TIGR03336
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.12 E-value=0.0029 Score=42.62 Aligned_cols=82 Identities=15% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHH-HCCCEEEEECCCCCCCCCCH
Q ss_conf 45314785043232355547889863687724202334446643401254677878774-01857999738532257310
Q gi|254780859|r 315 DVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGI-EEADAMLIIGSNPRLEAAVL 393 (700)
Q Consensus 315 ~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~di-e~ad~illiG~Np~~~~Pvl 393 (700)
T Consensus 230 ~~~iGIItsG~~y~----~v~eAl~~lG~~-i~----i--l--Klgm~~PLp~~~i~~F~~g~d~VlVVE----E~~p~i 292 (595)
T TIGR03336 230 GAKIGVIASGIAYN----YVKEALERLGVD-VS----V--L--KIGFTYPVPEGLVEEFLSGVEEVLVVE----ELEPVV 292 (595)
T ss_pred CCCEEEEECCCCHH----HHHHHHHHCCCC-CC----E--E--EECCCCCCCHHHHHHHHHCCCEEEEEE----CCCHHH
T ss_conf 99889992281089----999999972999-62----6--8--843767898899999984598899993----583658
Q ss_pred HHHHHHHHHCCCCEEECCCC
Q ss_conf 25778999759970661685
Q gi|254780859|r 394 NARIRKRWRRGNFPIAVIGD 413 (700)
Q Consensus 394 ~~rirka~~~g~~~I~vi~~ 413 (700)
T Consensus 293 E~qik~~~~~~~~~~~v~GK 312 (595)
T TIGR03336 293 EEQVKALAGTAGLNIKVHGK 312 (595)
T ss_pred HHHHHHHHHHCCCCCEEECC
T ss_conf 99999997516899547788