HHsearch alignment for GI: 254780859 and conserved domain: cd00368

>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=100.00  E-value=0  Score=475.20  Aligned_cols=349  Identities=32%  Similarity=0.414  Sum_probs=284.4

Q ss_pred             EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCC--CEEECCHHHHHHHH
Q ss_conf             20121168864366751599998852478887777411355422100000-0001101100222--20232414566888
Q gi|254780859|r  231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARING--RLKPVSWDYALKAI  307 (700)
Q Consensus       231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g--~~~~iSWdeAl~~i  307 (700)
T Consensus         1 ~s~C~~C~~gC~i~v~~~~g~i~rv~~~~~~~~n~g~~c~rgr~~~~~~~~~~Ri~~P~ir~~~~~~~~~isWeeAl~~i   80 (374)
T cd00368           1 PSVCPFCGVGCGILVYVKDGKVVRIEGDPNHPVNEGRLCDKGRAGLDGLYSPDRLKYPLIRVGGRGKFVPISWDEALDEI   80 (374)
T ss_pred             CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCEEECCCCCCEEEECHHHHHHHH
T ss_conf             90278862589808999999999998589888778511887987898626963305876850899974781799999999


Q ss_pred             HHHHCCCC-----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHC---CCCCCCCCHHHHHCCCEE
Q ss_conf             75201344-----5314785043232355547889863687724202334446643401---254677878774018579
Q gi|254780859|r  308 KSAVLSSD-----VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGR---ASYIFNPTIQGIEEADAM  379 (700)
Q Consensus       308 a~~L~~~~-----~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~---~~~~~~~~i~die~ad~i  379 (700)
T Consensus        81 a~~l~~~~~~~~~~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~i  160 (374)
T cd00368          81 AEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLADIENADLI  160 (374)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCEE
T ss_conf             89999998606987499993699978999999999998289861478875641688999986188889997889629799


Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHH---HCCCCCHHH-H-----HHHHCCCC-----HHHHHH
Q ss_conf             997385322573102577899975997066168501223344---304898678-8-----88826877-----889998
Q gi|254780859|r  380 LIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKY---EHLGNGSEA-L-----ADLVSGQH-----PFFKKL  445 (700)
Q Consensus       380 lliG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~---~~l~~~~e~-l-----~~~~~g~~-----~~~~~l  445 (700)
T Consensus       161 l~iG~n~~~~~p~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ad~~~~~~p~~d~al~~~~~~~~i~g~~~~~i~~~a~~~  240 (374)
T cd00368         161 LLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLPIRPGTDAALALAEWAAEITGVPAETIRALAREF  240 (374)
T ss_pred             EEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99679846768789999999986798599984888860586397724599839999807899988794999999999999


Q ss_pred             HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEE
Q ss_conf             72353102354433210474698989899988741058533475424675310452101776586523688886016759
Q gi|254780859|r  446 QEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIV  525 (700)
Q Consensus       446 ~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l  525 (700)
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~g~~~~~--~~-n-----~~~~~~~-----~~---------  298 (374)
T cd00368         241 AAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNIGRPGGGLGP--GG-N-----PLVSAPD-----AN---------  298 (374)
T ss_pred             HHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE--CC-C-----HHHHCCC-----HH---------
T ss_conf             8579859994653131546699999999999985669999827770--77-8-----7764869-----68---------


Q ss_pred             EECCCCHHHCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             98076422016654345022116666887455770478620247208820886742044328855574079999999998
Q gi|254780859|r  526 FLLGADELDFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADE  605 (700)
Q Consensus       526 ~~~g~d~l~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~  605 (700)
T Consensus       299 -----~~~~~~~~~~~~V~~~~~~~~t~~~ADviLP~~~~~E~~g~~~n~eg~~~~~~~~i~p~~~~~~~~~il~~La~~  373 (374)
T cd00368         299 -----RVRAALKKLDFVVVIDIFMTETAAYADVVLPAATYLEKEGTYTNTEGRVQLFRQAVEPPGEARSDWEILRELAKR  373 (374)
T ss_pred             -----HHHHHHHCCCEEEEECCCCCCCHHHCCEEECCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             -----999996389969998587996087498996899842137725775876999753568974574599999999805


Q ss_pred             H
Q ss_conf             0
Q gi|254780859|r  606 L  606 (700)
Q Consensus       606 L  606 (700)
T Consensus       374 l  374 (374)
T cd00368         374 L  374 (374)
T ss_pred             C
T ss_conf             9