HHsearch alignment for GI: 254780859 and conserved domain: cd02761
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=472.32 Aligned_cols=355 Identities=18% Similarity=0.159 Sum_probs=276.5
Q ss_pred EECCCCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 20121168864-36675159999885247888777741135542210000000011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGS-AIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC-~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
T Consensus 1 d~vC~~C~~gC~~l~v~v~~~~v~~~~~----------~C~KG~~~~~-~~~dRl~~Plir~----~~isWdeAi~~iA~ 65 (415)
T cd02761 1 DVVCPFCGLLCDDIEVEVEDNKITKVRN----------ACRIGAAKFA-RYERRITTPRIDG----KPVSLEEAIEKAAE 65 (415)
T ss_pred CCCCCCCCCCCCCEEEEEECCEECCCCC----------CCHHHHHHHC-CCCCCCCCCCCCC----CCCCHHHHHHHHHH
T ss_conf 9678813068675699987999865699----------8820377756-7986456774798----57889999999999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHC-CCEEEEECCCCC
Q ss_conf 201344531478504323235554788986368772420233444664340-125467787877401-857999738532
Q gi|254780859|r 310 AVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEE-ADAMLIIGSNPR 387 (700)
Q Consensus 310 ~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~-ad~illiG~Np~ 387 (700)
T Consensus 66 ~L~~~~~~-~~~g~~~~~~~~~~~~~~la~~~~~-~id~~~~~c~~~~~~~~~~~G~~~~t~~e~~~~Ad~Ilv~G~Np~ 143 (415)
T cd02761 66 ILKEAKRP-LFYGLGTTVCEAQRAGIELAEKLGA-IIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADVIVYWGTNPM 143 (415)
T ss_pred HHHHHCCC-EEEEECHHHHHHHHHHHHHHHHHCC-EECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCHH
T ss_conf 99863688-6999705548999999999998488-760222456789999998359988885778525788999788867
Q ss_pred CCCCCHHHH--------HHHHHHCCCCEEECCCCCHHHHHH---HHCCCCCHHH-----HHHHH----------CCC---
Q ss_conf 257310257--------789997599706616850122334---4304898678-----88882----------687---
Q gi|254780859|r 388 LEAAVLNAR--------IRKRWRRGNFPIAVIGDVGELRYK---YEHLGNGSEA-----LADLV----------SGQ--- 438 (700)
Q Consensus 388 ~~~Pvl~~r--------irka~~~g~~~I~vi~~~~~l~~~---~~~l~~~~e~-----l~~~~----------~g~--- 438 (700)
T Consensus 144 ~s~P~~~~~~~~~~r~~~~~~~~~~~~liviDpr~t~ta~~Ad~hl~irPGtD~~l~~al~~~l~~~~~~~~~~tgv~~~ 223 (415)
T cd02761 144 HAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQIDPGSDYELLAALRALLRGAGLVPDEVAGIPAE 223 (415)
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCHH
T ss_conf 96868887788877899986320699799984889804464197743799997999999999971368763243198999
Q ss_pred --CHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCC----CCC--
Q ss_conf --788999872353102354433210474698989899988741058533475424675310452101776----586--
Q gi|254780859|r 439 --HPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFV----PAD-- 510 (700)
Q Consensus 439 --~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~----P~~-- 510 (700)
T Consensus 224 ~i~~~A~~~~~a~~~~i~~g~g~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~l~g~~n~~G~~~~~~~~~g~p~~~~ 301 (415)
T cd02761 224 TILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALNEYTK--FALLPLRGHYNVRGFNQVLTWLTGYPFRVD 301 (415)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCEEECCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 999999999749946999835401777899999999999998685467--145617797886464332445678866553
Q ss_pred ---------C-CCCHHHHH--HCCCEEEECCCCHHHCCC-------CCCEEEHHHHHHHHHHHHCCEEECCCCCC-CCCC
Q ss_conf ---------5-23688886--016759980764220166-------54345022116666887455770478620-2472
Q gi|254780859|r 511 ---------D-TINAMNIL--DKTDIVFLLGADELDFSD-------KQALTVYIGSHGDRGAQSADVILPGAAYT-EKSG 570 (700)
Q Consensus 511 ---------~-~~~~~~~~--~~~~~l~~~g~d~l~~~~-------~~~fvV~~d~~~t~tA~~ADVVLP~a~~~-Ek~G 570 (700)
T Consensus 302 ~~~~~~~~~p~~~~~~~~~~~g~i~al~v~~~np~~s~P~~~~~~~~~~~~VV~D~f~TeTa~~ADvVLPaA~~~~Ek~G 381 (415)
T cd02761 302 FSRGYPRYNPGEFTAVDLLAEGEADALLIIASDPPAHFPQSAVKHLAEIPVIVIDPPPTPTTRVADVVIPVAIPGIEAGG 381 (415)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHCCEEECCCCCCCCCCE
T ss_conf 32377756875234999952789888999777866448689999864799899848999443138999817887635880
Q ss_pred EEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 088208867420443288555740799999999980
Q gi|254780859|r 571 LWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 571 tf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
T Consensus 382 t~tn~e~rvq~~~~a~~p--~~~~D~~Il~~la~~~ 415 (415)
T cd02761 382 TAYRMDGVVVLPLKAVET--ERLPDEEILKQLLEKV 415 (415)
T ss_pred EEECCCCCEEEECCCCCC--CCCCHHHHHHHHHHCC
T ss_conf 799379855643167898--9988899999999519