Query gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 700
No_of_seqs 340 out of 3632
Neff 7.9
Searched_HMMs 39220
Date Mon May 30 00:17:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780859.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09130 NADH dehydrogenase su 100.0 0 0 1684.5 52.2 676 4-688 1-679 (680)
2 TIGR01973 NuoG NADH-quinone ox 100.0 0 0 1475.7 31.3 588 7-602 1-715 (715)
3 PRK09129 NADH dehydrogenase su 100.0 0 0 1420.1 45.0 676 4-700 1-722 (777)
4 PRK07860 NADH dehydrogenase su 100.0 0 0 1410.4 44.6 669 2-700 14-741 (809)
5 PRK08166 NADH dehydrogenase su 100.0 0 0 1369.0 43.4 616 4-638 1-692 (858)
6 COG3383 Uncharacterized anaero 100.0 0 0 1292.1 41.1 628 2-640 3-777 (978)
7 KOG2282 consensus 100.0 0 0 1306.3 30.3 669 3-687 31-707 (708)
8 COG1034 NuoG NADH dehydrogenas 100.0 0 0 1236.9 34.2 677 4-691 1-687 (693)
9 PRK08493 NADH dehydrogenase su 100.0 0 0 1088.9 35.9 577 4-634 1-675 (819)
10 TIGR01591 Fdh-alpha formate de 100.0 0 0 832.3 27.9 467 232-700 1-624 (694)
11 cd02773 MopB_Res-Cmplx1_Nad11 100.0 0 0 680.0 25.7 372 231-606 1-375 (375)
12 cd02753 MopB_Formate-Dh-H Form 100.0 0 0 639.5 27.5 398 231-635 1-468 (512)
13 cd02771 MopB_NDH-1_NuoG2-N7 Mo 100.0 0 0 638.1 28.5 399 231-637 1-463 (472)
14 cd02774 MopB_Res-Cmplx1_Nad11- 100.0 0 0 628.2 22.9 363 231-606 1-366 (366)
15 cd02754 MopB_Nitrate-R-NapA-li 100.0 0 0 616.1 28.4 404 231-634 1-519 (565)
16 cd02772 MopB_NDH-1_NuoG2 MopB_ 100.0 0 0 620.7 21.3 369 231-606 1-414 (414)
17 cd02752 MopB_Formate-Dh-Na-lik 100.0 0 0 606.3 26.0 381 231-623 1-476 (649)
18 PRK07569 bidirectional hydroge 100.0 0 0 599.1 18.0 222 3-237 2-227 (236)
19 cd02768 MopB_NADH-Q-OR-NuoG2 M 100.0 0 0 594.0 21.2 369 231-606 1-386 (386)
20 PTZ00305 NADH:ubiquinone oxido 100.0 0 0 602.4 14.5 202 6-216 70-273 (297)
21 PRK13532 nitrate reductase; Pr 100.0 0 0 565.1 25.8 386 227-612 39-575 (828)
22 cd02766 MopB_3 The MopB_3 CD i 100.0 0 0 537.9 26.9 378 231-635 1-457 (501)
23 cd02755 MopB_Thiosulfate-R-lik 100.0 0 0 534.6 26.3 372 230-625 1-447 (454)
24 cd02750 MopB_Nitrate-R-NarG-li 100.0 0 0 533.6 26.5 377 228-630 2-460 (461)
25 cd02762 MopB_1 The MopB_1 CD i 100.0 0 0 538.4 22.7 378 231-609 1-479 (539)
26 cd02759 MopB_Acetylene-hydrata 100.0 0 0 532.6 22.6 352 231-609 1-429 (477)
27 cd02756 MopB_Arsenite-Ox Arsen 100.0 0 0 524.0 25.1 403 224-626 7-600 (676)
28 cd02765 MopB_4 The MopB_4 CD i 100.0 0 0 492.6 23.7 372 232-634 2-513 (567)
29 cd02770 MopB_DmsA-EC This CD ( 100.0 0 0 489.8 25.6 392 232-624 2-533 (617)
30 cd02757 MopB_Arsenate-R This C 100.0 0 0 491.6 23.0 355 230-609 2-459 (523)
31 TIGR03129 one_C_dehyd_B formyl 100.0 0 0 492.6 22.0 360 231-606 1-421 (421)
32 cd00368 Molybdopterin-Binding 100.0 0 0 475.2 21.2 349 231-606 1-374 (374)
33 cd02761 MopB_FmdB-FwdB The Mop 100.0 0 0 472.3 19.9 355 231-606 1-415 (415)
34 COG0243 BisC Anaerobic dehydro 100.0 0 0 462.7 24.0 393 230-625 41-553 (765)
35 cd02751 MopB_DMSOR-like The Mo 100.0 0 0 453.1 22.7 380 240-623 6-524 (609)
36 TIGR01553 formate-DH-alph form 100.0 0 0 455.5 19.2 405 198-607 18-673 (1043)
37 cd02769 MopB_DMSOR-BSOR-TMAOR 100.0 0 0 436.8 22.2 370 238-612 4-510 (609)
38 TIGR03479 DMSO_red_II_alp DMSO 100.0 0 0 422.7 25.5 380 227-608 55-644 (912)
39 pfam00384 Molybdopterin Molybd 100.0 0 0 430.1 17.8 321 283-604 1-357 (358)
40 PRK09939 putative oxidoreducta 100.0 0 0 421.3 22.6 354 281-635 106-597 (759)
41 cd02767 MopB_ydeP The MopB_yde 100.0 0 0 420.8 22.0 360 276-635 57-547 (574)
42 cd02763 MopB_2 The MopB_2 CD i 100.0 0 0 419.1 23.1 377 231-609 1-536 (679)
43 cd02760 MopB_Phenylacetyl-CoA- 100.0 0 0 400.3 20.3 382 231-612 1-624 (760)
44 TIGR02166 dmsA_ynfE anaerobic 100.0 0 0 389.8 19.5 416 223-642 41-644 (849)
45 cd02758 MopB_Tetrathionate-Ra 100.0 0 0 378.3 25.5 393 231-626 1-632 (735)
46 TIGR01706 NAPA periplasmic nit 100.0 0 0 367.3 15.9 395 228-630 41-637 (930)
47 TIGR01701 Fdhalpha-like oxidor 100.0 1.4E-45 0 349.1 16.7 357 282-638 113-653 (824)
48 cd02764 MopB_PHLH The MopB_PHL 100.0 8.3E-44 0 335.4 20.5 366 226-604 41-476 (524)
49 TIGR02693 arsenite_ox_L arseni 100.0 1.2E-43 0 334.3 18.4 408 224-635 6-662 (858)
50 COG1029 FwdB Formylmethanofura 100.0 8.7E-33 2.2E-37 255.8 16.9 362 229-607 3-426 (429)
51 TIGR02164 torA trimethylamine- 100.0 1.5E-29 3.9E-34 232.4 15.3 369 242-617 61-590 (847)
52 PRK12814 putative NADPH-depend 100.0 2.3E-28 5.8E-33 223.9 11.5 97 5-110 4-100 (652)
53 TIGR00509 bisC_fam molybdopter 99.9 4.8E-24 1.2E-28 192.7 18.3 377 242-624 6-551 (802)
54 COG5013 NarG Nitrate reductase 99.9 8.9E-24 2.3E-28 190.8 17.2 377 227-606 44-829 (1227)
55 TIGR01580 narG nitrate reducta 99.9 7.4E-23 1.9E-27 184.1 15.1 385 220-606 35-844 (1248)
56 PRK12814 putative NADPH-depend 99.5 4E-14 1E-18 121.0 3.6 40 163-212 59-112 (652)
57 pfam10588 NADH-G_4Fe-4S_3 NADH 99.4 1.2E-13 3.1E-18 117.6 4.5 41 95-135 1-41 (41)
58 pfam04879 Molybdop_Fe4S4 Molyb 99.4 3.7E-13 9.5E-18 114.0 3.7 55 227-281 1-55 (55)
59 PRK12387 formate hydrogenlyase 98.8 4.9E-09 1.2E-13 84.3 5.5 91 121-217 4-94 (178)
60 CHL00014 ndhI NADH dehydrogena 98.8 4.4E-09 1.1E-13 84.6 3.4 83 131-216 38-122 (173)
61 PRK08222 hydrogenase 4 subunit 98.7 1.8E-08 4.7E-13 80.1 5.0 87 121-216 4-93 (181)
62 PRK06259 succinate dehydrogena 98.7 2.8E-08 7.2E-13 78.8 5.1 171 3-210 2-203 (491)
63 PRK08348 NADH-plastoquinone ox 98.7 1.9E-08 4.8E-13 80.1 3.8 82 128-219 14-97 (111)
64 COG1143 NuoI Formate hydrogenl 98.6 2.7E-08 6.9E-13 78.9 2.3 84 130-218 30-117 (172)
65 PRK12385 fumarate reductase ir 98.5 5.5E-08 1.4E-12 76.7 3.3 167 13-212 27-218 (243)
66 TIGR02512 Fe_only_hydrog hydro 98.5 2.8E-08 7.1E-13 78.8 1.5 69 151-219 2-73 (380)
67 COG0479 FrdB Succinate dehydro 98.5 8.1E-08 2.1E-12 75.5 3.8 163 13-215 23-217 (234)
68 pfam09326 DUF1982 Domain of un 98.4 5.9E-08 1.5E-12 76.5 1.6 47 634-681 2-48 (48)
69 PRK05888 NADH dehydrogenase su 98.4 1.5E-07 3.9E-12 73.5 3.7 84 131-216 29-117 (172)
70 PRK12386 fumarate reductase ir 98.3 6.8E-07 1.7E-11 68.8 3.4 171 12-212 22-217 (250)
71 TIGR02494 PFLE_PFLC glycyl-rad 98.2 6.7E-07 1.7E-11 68.9 2.2 82 103-214 21-104 (305)
72 PRK13552 frdB fumarate reducta 98.2 4.6E-07 1.2E-11 70.0 1.3 168 12-212 26-222 (240)
73 PRK12577 succinate dehydrogena 98.2 3.6E-07 9.3E-12 70.8 0.5 61 10-74 19-80 (330)
74 PRK08640 sdhB succinate dehydr 98.2 1.9E-06 4.8E-11 65.6 3.7 171 12-212 23-223 (252)
75 PRK05950 sdhB succinate dehydr 98.1 9.3E-07 2.4E-11 67.8 1.6 168 12-212 21-217 (235)
76 cd00207 fer2 2Fe-2S iron-sulfu 98.1 5.8E-06 1.5E-10 62.1 5.3 65 5-75 1-82 (84)
77 PRK05113 electron transport co 98.1 2.8E-06 7E-11 64.4 3.6 105 111-228 71-175 (184)
78 PRK09477 napH quinol dehydroge 98.1 6.8E-07 1.7E-11 68.8 0.4 64 153-223 221-284 (287)
79 TIGR01971 NuoI NADH-quinone ox 98.1 1.1E-06 2.7E-11 67.4 1.1 79 134-217 18-110 (129)
80 KOG3256 consensus 98.0 2.1E-06 5.4E-11 65.3 2.0 96 104-218 74-172 (212)
81 PRK05713 hypothetical protein; 98.0 1.1E-05 2.9E-10 60.0 5.1 47 4-56 1-47 (312)
82 PRK12576 succinate dehydrogena 98.0 2.8E-06 7.1E-11 64.4 1.6 170 9-212 20-218 (311)
83 PRK12575 succinate dehydrogena 97.9 3.7E-06 9.4E-11 63.5 0.8 162 12-212 23-217 (235)
84 COG2080 CoxS Aerobic-type carb 97.9 2.5E-05 6.5E-10 57.4 5.0 108 2-124 1-114 (156)
85 PRK13984 putative oxidoreducta 97.9 3.5E-06 9E-11 63.6 0.6 76 136-216 26-106 (604)
86 PRK07570 succinate dehydrogena 97.8 8.6E-06 2.2E-10 60.8 1.8 61 152-212 153-228 (247)
87 PRK05464 Na(+)-translocating N 97.8 7E-05 1.8E-09 54.3 6.3 66 4-74 34-119 (408)
88 CHL00065 psaC photosystem I su 97.8 7.9E-06 2E-10 61.1 1.5 63 153-219 6-69 (81)
89 TIGR02176 pyruv_ox_red pyruvat 97.8 1.4E-05 3.6E-10 59.3 2.7 104 88-211 640-770 (1194)
90 CHL00134 petF ferredoxin; Vali 97.8 4.8E-05 1.2E-09 55.4 5.0 63 12-89 17-95 (99)
91 PRK07609 CDP-6-deoxy-delta-3,4 97.7 6.7E-05 1.7E-09 54.4 5.4 49 1-55 1-49 (337)
92 PTZ00038 ferredoxin; Provision 97.7 4.9E-05 1.2E-09 55.4 4.6 65 11-90 87-167 (172)
93 PRK09476 napG quinol dehydroge 97.7 1.3E-05 3.3E-10 59.6 1.6 56 155-214 58-117 (254)
94 PRK10194 ferredoxin-type prote 97.7 1.8E-05 4.5E-10 58.6 1.8 74 155-241 34-117 (164)
95 PRK06991 ferredoxin; Provision 97.7 4.7E-05 1.2E-09 55.5 4.0 95 111-218 43-137 (274)
96 pfam00111 Fer2 2Fe-2S iron-sul 97.7 5.8E-05 1.5E-09 54.9 4.4 44 7-56 1-47 (78)
97 PRK10882 hydrogenase 2 protein 97.7 2.6E-05 6.5E-10 57.4 2.4 150 151-316 41-224 (329)
98 TIGR03193 4hydroxCoAred 4-hydr 97.7 0.00011 2.9E-09 52.8 5.7 97 4-118 1-105 (148)
99 PRK09624 porD pyuvate ferredox 97.6 1.6E-05 4.2E-10 58.8 1.3 55 152-216 47-101 (105)
100 TIGR03198 pucE xanthine dehydr 97.6 0.0003 7.8E-09 49.7 7.2 103 2-118 1-106 (151)
101 PRK09898 hypothetical protein; 97.6 1.9E-05 4.8E-10 58.4 0.9 93 150-245 60-170 (208)
102 PRK09623 vorD 2-ketoisovalerat 97.6 1.8E-05 4.7E-10 58.4 0.7 55 153-217 48-102 (105)
103 TIGR03048 PS_I_psaC photosyste 97.5 3.3E-05 8.4E-10 56.6 1.7 62 154-219 6-68 (80)
104 PRK09908 xanthine dehydrogenas 97.5 0.00026 6.8E-09 50.1 6.0 100 2-119 6-112 (159)
105 PRK09898 hypothetical protein; 97.5 3.8E-05 9.7E-10 56.2 1.5 55 149-216 147-201 (208)
106 PRK11872 antC anthranilate dio 97.5 0.00025 6.3E-09 50.3 5.5 48 3-56 3-53 (340)
107 TIGR01941 nqrF NADH:ubiquinone 97.5 0.00021 5.3E-09 50.8 5.1 64 5-75 32-117 (425)
108 PRK12769 putative oxidoreducta 97.5 3.7E-05 9.4E-10 56.3 1.2 63 147-215 76-144 (654)
109 TIGR02912 sulfite_red_C sulfit 97.5 6E-05 1.5E-09 54.8 2.2 88 152-255 171-263 (323)
110 COG1149 MinD superfamily P-loo 97.4 6.2E-05 1.6E-09 54.6 2.1 57 152-218 65-121 (284)
111 PRK12771 putative glutamate sy 97.4 4.7E-05 1.2E-09 55.5 1.4 49 555-603 364-426 (560)
112 PRK02651 photosystem I subunit 97.4 4.7E-05 1.2E-09 55.5 1.3 62 154-219 7-69 (81)
113 COG2878 Predicted NADH:ubiquin 97.4 5.4E-05 1.4E-09 55.1 1.1 104 113-228 74-177 (198)
114 TIGR02163 napH_ ferredoxin-typ 97.4 7.9E-05 2E-09 53.9 1.9 53 154-214 202-260 (263)
115 TIGR00403 ndhI NADH-plastoquin 97.3 1.8E-05 4.5E-10 58.6 -1.7 83 133-216 41-123 (187)
116 COG2871 NqrF Na+-transporting 97.2 0.00068 1.7E-08 47.1 5.2 66 5-75 37-122 (410)
117 PRK10330 electron transport pr 97.2 0.00028 7E-09 50.0 3.0 94 148-245 2-103 (181)
118 TIGR03311 Se_dep_Molyb_1 selen 97.1 0.0011 2.8E-08 45.7 5.0 95 6-116 2-99 (848)
119 COG0437 HybA Fe-S-cluster-cont 97.1 0.00024 6E-09 50.5 1.6 93 149-246 11-117 (203)
120 PRK12809 putative oxidoreducta 97.0 0.00019 4.7E-09 51.2 0.8 59 148-217 77-138 (639)
121 PRK08764 ferredoxin; Provision 97.0 0.00049 1.3E-08 48.2 2.9 94 111-217 44-137 (138)
122 PRK11433 putative xanthine deh 97.0 0.0062 1.6E-07 40.2 8.1 155 3-175 50-216 (217)
123 COG1139 Uncharacterized conser 96.9 0.00037 9.4E-09 49.0 1.6 18 296-313 16-33 (459)
124 PRK10713 2Fe-2S ferredoxin Yfa 96.9 0.0026 6.6E-08 42.9 5.6 65 5-72 4-79 (84)
125 PRK07118 ferredoxin; Validated 96.8 0.00082 2.1E-08 46.6 2.8 100 111-221 72-193 (276)
126 PRK09626 oorD 2-oxoglutarate-a 96.7 0.00046 1.2E-08 48.4 0.8 67 148-218 8-75 (103)
127 COG3894 Uncharacterized metal- 96.7 0.0034 8.6E-08 42.1 5.2 80 4-97 3-97 (614)
128 COG0633 Fdx Ferredoxin [Energy 96.7 0.0039 1E-07 41.6 5.3 51 1-57 1-54 (102)
129 COG1145 NapF Ferredoxin [Energ 96.6 0.00035 9E-09 49.2 -0.2 63 150-218 23-85 (99)
130 TIGR00402 napF ferredoxin-type 96.6 0.0012 3.1E-08 45.3 2.5 93 155-261 38-142 (161)
131 TIGR00273 TIGR00273 iron-sulfu 96.6 0.0007 1.8E-08 47.0 0.9 11 158-168 298-308 (450)
132 TIGR03149 cyt_nit_nrfC cytochr 96.6 0.00084 2.1E-08 46.5 1.2 90 150-245 40-141 (225)
133 COG1148 HdrA Heterodisulfide r 96.4 0.0012 3E-08 45.5 1.0 44 169-212 185-240 (622)
134 PRK05035 electron transport co 96.3 0.00043 1.1E-08 48.6 -1.4 42 160-209 54-95 (725)
135 PRK11168 glpC sn-glycerol-3-ph 96.3 0.00072 1.8E-08 47.0 -0.3 63 151-215 6-77 (400)
136 PRK07118 ferredoxin; Validated 96.2 0.0016 4.1E-08 44.4 1.1 65 149-217 161-234 (276)
137 TIGR03379 glycerol3P_GlpC glyc 96.2 0.00088 2.2E-08 46.3 -0.3 60 153-214 2-70 (397)
138 COG1146 Ferredoxin [Energy pro 96.2 0.001 2.7E-08 45.8 0.0 61 151-218 3-63 (68)
139 PRK10330 electron transport pr 96.2 0.0013 3.3E-08 45.1 0.4 48 155-213 55-104 (181)
140 TIGR03336 IOR_alpha indolepyru 96.1 0.0029 7.3E-08 42.6 1.9 82 315-413 230-312 (595)
141 TIGR03224 benzo_boxA benzoyl-C 96.1 0.0024 6.1E-08 43.2 1.4 65 153-228 7-71 (411)
142 TIGR01944 rnfB electron transp 96.1 0.0039 9.8E-08 41.7 2.4 102 113-224 78-183 (213)
143 COG2768 Uncharacterized Fe-S c 96.1 0.0025 6.4E-08 43.0 1.4 58 145-214 182-239 (354)
144 COG1142 HycB Fe-S-cluster-cont 95.9 0.006 1.5E-07 40.3 2.6 88 148-242 2-95 (165)
145 TIGR03290 CoB_CoM_SS_C CoB--Co 95.8 0.0016 4E-08 44.5 -0.5 55 156-214 2-64 (144)
146 TIGR03313 Se_sel_red_Mo probab 95.8 0.01 2.7E-07 38.6 3.7 97 7-116 1-100 (951)
147 TIGR02745 ccoG_rdxA_fixG cytoc 95.8 0.0024 6E-08 43.2 0.4 12 197-208 268-279 (474)
148 PRK10194 ferredoxin-type prote 95.8 0.0053 1.4E-07 40.7 2.1 66 149-218 60-127 (164)
149 PRK10882 hydrogenase 2 protein 95.8 0.0038 9.8E-08 41.7 1.3 53 153-214 108-162 (329)
150 PRK12769 putative oxidoreducta 95.7 0.0084 2.1E-07 39.3 2.8 91 147-242 1-98 (654)
151 PRK12809 putative oxidoreducta 95.6 0.0092 2.4E-07 39.0 2.7 90 147-242 1-98 (639)
152 COG2221 DsrA Dissimilatory sul 95.5 0.014 3.5E-07 37.7 3.2 24 282-311 238-261 (317)
153 TIGR00397 mauM_napG MauM/NapG 95.4 0.011 2.7E-07 38.5 2.6 86 156-247 53-147 (213)
154 PRK09625 porD pyruvate flavodo 95.4 0.0059 1.5E-07 40.4 1.0 56 153-218 53-110 (130)
155 COG1142 HycB Fe-S-cluster-cont 95.2 0.0096 2.4E-07 38.8 1.8 59 149-216 75-139 (165)
156 TIGR03149 cyt_nit_nrfC cytochr 95.2 0.011 2.7E-07 38.5 2.0 21 150-170 119-139 (225)
157 PRK11274 glcF glycolate oxidas 95.2 0.0029 7.4E-08 42.6 -1.0 69 144-212 11-89 (407)
158 COG1029 FwdB Formylmethanofura 95.2 0.028 7E-07 35.5 4.0 18 374-391 333-350 (429)
159 COG0247 GlpC Fe-S oxidoreducta 94.7 0.0023 6E-08 43.3 -2.6 75 152-226 5-88 (388)
160 PRK13795 hypothetical protein; 94.6 0.017 4.2E-07 37.1 1.7 18 296-313 211-228 (630)
161 COG0437 HybA Fe-S-cluster-cont 94.6 0.018 4.5E-07 36.9 1.8 54 149-216 93-156 (203)
162 COG2221 DsrA Dissimilatory sul 94.6 0.016 4.1E-07 37.3 1.5 53 151-215 167-219 (317)
163 TIGR02418 acolac_catab acetola 94.5 0.12 3E-06 30.9 5.8 90 301-392 188-286 (553)
164 TIGR03129 one_C_dehyd_B formyl 94.4 0.069 1.8E-06 32.6 4.4 17 375-391 330-346 (421)
165 COG4624 Iron only hydrogenase 94.3 0.01 2.6E-07 38.7 0.0 63 155-226 1-64 (411)
166 TIGR02486 RDH reductive dehalo 94.2 0.018 4.5E-07 36.9 1.0 19 198-216 224-242 (338)
167 cd02761 MopB_FmdB-FwdB The Mop 94.1 0.07 1.8E-06 32.6 4.0 17 375-391 324-340 (415)
168 COG3862 Uncharacterized protei 93.7 0.064 1.6E-06 32.9 3.1 58 230-299 3-63 (117)
169 PRK09326 F420H2 dehydrogenase 93.3 0.047 1.2E-06 33.8 1.9 53 550-604 260-318 (346)
170 TIGR00276 TIGR00276 iron-sulfu 93.1 0.027 6.9E-07 35.6 0.4 29 188-216 160-192 (297)
171 TIGR02936 fdxN_nitrog ferredox 93.0 0.078 2E-06 32.3 2.7 64 150-217 15-96 (96)
172 TIGR03478 DMSO_red_II_bet DMSO 92.5 0.063 1.6E-06 32.9 1.6 19 152-170 7-25 (321)
173 PRK12387 formate hydrogenlyase 92.5 0.034 8.6E-07 34.9 0.2 46 196-243 38-87 (178)
174 COG4656 RnfC Predicted NADH:ub 92.5 0.012 3E-07 38.1 -2.1 38 372-412 192-230 (529)
175 COG4231 Indolepyruvate ferredo 92.5 0.082 2.1E-06 32.1 2.2 99 294-413 221-329 (640)
176 TIGR02745 ccoG_rdxA_fixG cytoc 92.3 0.059 1.5E-06 33.1 1.3 14 482-495 341-354 (474)
177 PRK08348 NADH-plastoquinone ox 92.3 0.042 1.1E-06 34.2 0.5 46 197-244 43-88 (111)
178 TIGR02160 PA_CoA_Oxy5 phenylac 92.2 0.48 1.2E-05 26.5 5.9 22 226-248 49-70 (371)
179 PRK09326 F420H2 dehydrogenase 92.2 0.048 1.2E-06 33.8 0.7 53 154-210 10-67 (346)
180 PRK12771 putative glutamate sy 92.2 0.09 2.3E-06 31.8 2.1 15 202-216 47-61 (560)
181 COG2104 ThiS Sulfur transfer p 92.0 0.5 1.3E-05 26.4 5.7 40 3-57 1-40 (68)
182 PRK07440 hypothetical protein; 92.0 0.28 7.1E-06 28.3 4.4 58 1-74 1-59 (70)
183 TIGR02066 dsrB sulfite reducta 91.9 0.084 2.1E-06 32.0 1.6 97 199-313 205-309 (366)
184 pfam00205 TPP_enzyme_M Thiamin 91.9 0.75 1.9E-05 25.2 6.5 83 305-388 2-90 (138)
185 PRK08611 pyruvate oxidase; Pro 91.7 0.39 1E-05 27.2 4.9 85 301-387 190-279 (576)
186 pfam06902 DUF1271 Protein of u 91.6 0.026 6.7E-07 35.7 -1.2 54 150-214 7-60 (64)
187 TIGR01591 Fdh-alpha formate de 91.3 0.14 3.5E-06 30.5 2.2 89 120-212 86-181 (694)
188 TIGR02700 flavo_MJ0208 archaeo 91.3 0.038 9.8E-07 34.5 -0.6 70 153-232 145-217 (237)
189 PRK08617 acetolactate synthase 91.3 1.1 2.9E-05 23.8 7.5 93 300-393 187-286 (552)
190 COG1600 Uncharacterized Fe-S p 91.2 0.049 1.3E-06 33.7 -0.1 13 374-386 63-75 (337)
191 TIGR03315 Se_ygfK putative sel 90.7 0.27 6.8E-06 28.4 3.3 49 555-603 764-826 (1012)
192 TIGR01553 formate-DH-alph form 90.7 0.17 4.5E-06 29.7 2.3 75 488-562 194-284 (1043)
193 TIGR01945 rnfC electron transp 90.7 0.048 1.2E-06 33.8 -0.6 18 395-412 215-237 (444)
194 TIGR03287 methan_mark_16 putat 90.7 0.057 1.5E-06 33.2 -0.2 54 221-275 18-74 (391)
195 PRK06154 hypothetical protein; 90.5 1.2 3.1E-05 23.6 6.5 88 301-389 193-286 (556)
196 PRK08322 acetolactate synthase 90.3 1.4 3.5E-05 23.3 6.6 89 301-391 183-278 (547)
197 TIGR02720 pyruv_oxi_spxB pyruv 90.2 0.39 9.9E-06 27.2 3.7 136 387-546 131-294 (577)
198 TIGR00384 dhsB succinate dehyd 90.1 0.18 4.5E-06 29.7 1.9 185 9-213 15-226 (236)
199 cd02765 MopB_4 The MopB_4 CD i 90.0 0.47 1.2E-05 26.6 4.0 36 375-411 386-421 (567)
200 PRK06466 acetolactate synthase 89.7 1.5 3.9E-05 22.9 7.4 111 302-417 194-310 (574)
201 PRK08222 hydrogenase 4 subunit 89.7 0.099 2.5E-06 31.5 0.3 48 196-245 38-89 (181)
202 PRK02651 photosystem I subunit 89.6 0.088 2.2E-06 31.9 0.1 20 197-216 10-29 (81)
203 PRK05888 NADH dehydrogenase su 89.6 0.3 7.6E-06 28.1 2.8 39 179-218 42-80 (172)
204 COG1144 Pyruvate:ferredoxin ox 89.5 0.1 2.6E-06 31.4 0.3 53 153-214 32-84 (91)
205 COG1143 NuoI Formate hydrogenl 89.3 0.13 3.2E-06 30.7 0.6 49 198-246 57-112 (172)
206 PRK06112 acetolactate synthase 89.2 1.7 4.3E-05 22.6 7.7 110 300-414 202-322 (581)
207 PRK07789 acetolactate synthase 89.2 1.7 4.3E-05 22.6 7.3 109 301-414 218-332 (612)
208 PRK06882 acetolactate synthase 88.6 1.8 4.6E-05 22.4 7.8 112 300-416 192-309 (574)
209 PRK06083 sulfur carrier protei 88.4 0.83 2.1E-05 24.8 4.3 55 4-74 3-58 (69)
210 PRK08199 acetolactate synthase 88.3 1.9 4.8E-05 22.3 7.0 89 301-390 185-279 (553)
211 PRK09626 oorD 2-oxoglutarate-a 88.3 0.12 3.1E-06 30.8 0.0 45 197-242 17-66 (103)
212 TIGR02179 PorD_KorD 2-oxoacid: 88.0 0.16 4.1E-06 30.0 0.5 56 153-214 22-79 (84)
213 COG1149 MinD superfamily P-loo 87.9 0.3 7.5E-06 28.1 1.8 44 197-244 70-114 (284)
214 pfam00037 Fer4 4Fe-4S binding 87.9 0.14 3.6E-06 30.4 0.1 18 197-214 7-24 (26)
215 TIGR03048 PS_I_psaC photosyste 87.9 0.14 3.5E-06 30.5 0.0 20 197-216 9-28 (80)
216 PRK05113 electron transport co 87.9 0.35 8.9E-06 27.6 2.1 101 156-267 71-174 (184)
217 TIGR02951 DMSO_dmsB dimethylsu 87.7 0.26 6.7E-06 28.4 1.4 96 151-254 4-124 (162)
218 PRK07282 acetolactate synthase 87.6 2.1 5.4E-05 21.9 7.7 111 301-416 197-313 (566)
219 PRK05858 hypothetical protein; 87.4 1.9 4.8E-05 22.3 5.7 84 301-387 192-276 (543)
220 TIGR00276 TIGR00276 iron-sulfu 87.3 0.27 6.8E-06 28.4 1.3 42 556-604 228-269 (297)
221 TIGR03254 oxalate_oxc oxalyl-C 87.2 1.9 4.9E-05 22.2 5.6 87 299-388 191-278 (554)
222 COG0348 NapH Polyferredoxin [E 87.2 0.17 4.3E-06 29.9 0.2 14 198-211 247-260 (386)
223 cd02752 MopB_Formate-Dh-Na-lik 87.1 0.5 1.3E-05 26.5 2.5 37 381-418 338-374 (649)
224 COG4070 Predicted peptidyl-pro 86.6 0.82 2.1E-05 24.9 3.4 31 4-34 1-31 (512)
225 PRK09259 putative oxalyl-CoA d 86.5 1.6 4.1E-05 22.7 4.9 85 301-388 203-288 (572)
226 PRK07525 sulfoacetaldehyde ace 86.3 2.4 6.2E-05 21.5 6.9 86 301-387 187-278 (589)
227 PRK08155 acetolactate synthase 86.2 2.5 6.3E-05 21.4 7.7 110 301-415 198-313 (564)
228 PRK08327 acetolactate synthase 86.2 2.5 6.3E-05 21.4 6.3 85 301-388 207-292 (568)
229 pfam00037 Fer4 4Fe-4S binding 85.8 0.26 6.5E-06 28.5 0.5 22 151-172 1-22 (26)
230 PRK06944 sulfur carrier protei 85.8 1.2 3E-05 23.7 3.9 52 6-74 2-54 (65)
231 CHL00014 ndhI NADH dehydrogena 85.4 0.21 5.3E-06 29.2 -0.1 20 197-216 63-82 (173)
232 TIGR02007 fdx_isc ferredoxin, 85.2 0.68 1.7E-05 25.5 2.5 42 9-55 13-54 (110)
233 COG1141 Fer Ferredoxin [Energy 84.7 0.13 3.4E-06 30.6 -1.3 60 150-214 2-65 (68)
234 PRK09853 putative selenate red 84.7 0.66 1.7E-05 25.6 2.2 49 555-603 778-839 (1032)
235 PRK04483 threonyl-tRNA synthet 84.7 0.92 2.3E-05 24.5 2.9 204 4-258 1-221 (634)
236 cd02762 MopB_1 The MopB_1 CD i 84.7 0.69 1.8E-05 25.4 2.3 42 376-418 378-419 (539)
237 PRK07092 benzoylformate decarb 84.5 2.9 7.5E-05 20.9 7.9 88 300-388 183-276 (521)
238 TIGR01582 FDH-beta formate deh 84.4 0.31 7.9E-06 27.9 0.4 92 150-245 25-150 (293)
239 TIGR03457 sulphoacet_xsc sulfo 84.2 3 7.7E-05 20.8 6.4 86 301-387 183-274 (579)
240 COG2768 Uncharacterized Fe-S c 84.1 0.27 7E-06 28.3 0.0 16 396-411 94-109 (354)
241 PRK08527 acetolactate synthase 84.1 3.1 7.8E-05 20.8 6.3 86 302-388 192-283 (560)
242 PRK06273 ferredoxin; Provision 83.8 0.42 1.1E-05 27.0 0.9 45 197-245 52-109 (163)
243 KOG3309 consensus 83.7 1.8 4.5E-05 22.5 4.0 42 10-56 52-95 (159)
244 TIGR02008 fdx_plant ferredoxin 83.3 0.58 1.5E-05 26.0 1.4 40 11-56 13-52 (96)
245 TIGR02163 napH_ ferredoxin-typ 83.3 0.25 6.4E-06 28.6 -0.4 30 453-489 150-179 (263)
246 PRK11269 glyoxylate carboligas 83.2 3.3 8.4E-05 20.5 8.0 111 301-416 190-307 (591)
247 COG0348 NapH Polyferredoxin [E 83.2 0.27 7E-06 28.3 -0.3 14 202-215 183-196 (386)
248 COG1145 NapF Ferredoxin [Energ 83.2 0.37 9.4E-06 27.4 0.4 19 197-215 30-48 (99)
249 TIGR00328 flhB flagellar biosy 83.1 2 5.2E-05 22.0 4.1 31 394-424 296-326 (352)
250 PRK05659 sulfur carrier protei 82.7 2.2 5.5E-05 21.8 4.2 53 5-73 1-54 (66)
251 TIGR01945 rnfC electron transp 82.6 0.49 1.3E-05 26.5 0.8 10 374-383 156-165 (444)
252 COG1600 Uncharacterized Fe-S p 82.5 0.25 6.3E-06 28.6 -0.7 24 193-216 179-205 (337)
253 TIGR03478 DMSO_red_II_bet DMSO 82.4 0.75 1.9E-05 25.2 1.7 16 198-213 164-179 (321)
254 COG0028 IlvB Thiamine pyrophos 82.3 3.5 9E-05 20.3 6.9 89 302-391 188-282 (550)
255 PRK07979 acetolactate synthase 82.0 3.7 9.3E-05 20.2 6.5 87 301-388 193-285 (574)
256 PRK07418 acetolactate synthase 81.7 3.7 9.5E-05 20.1 8.1 88 301-389 211-304 (615)
257 PRK06725 acetolactate synthase 81.7 3.7 9.5E-05 20.1 7.5 108 302-414 202-315 (570)
258 COG1148 HdrA Heterodisulfide r 81.0 0.5 1.3E-05 26.5 0.4 55 156-213 224-288 (622)
259 TIGR02910 sulfite_red_A sulfit 80.3 0.42 1.1E-05 26.9 -0.2 28 268-302 29-56 (346)
260 KOG3256 consensus 80.0 0.48 1.2E-05 26.6 0.0 104 143-249 42-170 (212)
261 CHL00099 ilvB acetohydroxyacid 79.8 4.3 0.00011 19.7 7.2 111 301-417 201-318 (588)
262 PRK08053 sulfur carrier protei 79.1 3.3 8.3E-05 20.6 4.1 54 5-74 1-55 (66)
263 PRK03772 threonyl-tRNA synthet 78.8 1.8 4.6E-05 22.4 2.7 207 4-257 1-220 (642)
264 cd01916 ACS_1 Acetyl-CoA synth 78.6 0.16 4E-06 30.1 -2.8 31 283-313 102-135 (731)
265 PRK06965 acetolactate synthase 78.3 4.7 0.00012 19.4 6.2 88 301-389 208-301 (587)
266 cd00565 ThiS ThiS (ThiaminS) i 78.1 3.2 8.1E-05 20.6 3.8 37 6-57 1-37 (65)
267 TIGR00118 acolac_lg acetolacta 78.0 2.6 6.6E-05 21.3 3.3 39 438-476 203-241 (593)
268 PRK06048 acetolactate synthase 77.9 4.9 0.00012 19.3 7.6 111 301-417 194-311 (562)
269 PRK06457 pyruvate dehydrogenas 77.7 4.9 0.00013 19.3 5.9 27 599-625 478-505 (549)
270 TIGR00233 trpS tryptophanyl-tR 77.1 2.1 5.4E-05 21.9 2.6 78 543-634 139-219 (366)
271 PRK05863 sulfur carrier protei 76.5 3.9 1E-04 20.0 3.9 52 6-73 2-53 (65)
272 PRK08978 acetolactate synthase 76.4 5.3 0.00014 19.0 6.7 86 301-388 183-275 (548)
273 TIGR03394 indol_phenyl_DC indo 76.0 5.5 0.00014 18.9 6.1 68 551-625 438-506 (535)
274 PRK09107 acetolactate synthase 75.2 5.7 0.00015 18.8 6.8 88 301-389 198-293 (594)
275 COG3592 Uncharacterized conser 74.9 0.52 1.3E-05 26.3 -1.0 54 150-214 17-70 (74)
276 PRK12444 threonyl-tRNA synthet 74.6 3.4 8.5E-05 20.5 3.1 205 2-257 3-223 (639)
277 PRK12778 putative bifunctional 74.3 6 0.00015 18.6 4.5 71 31-111 202-274 (760)
278 PRK05035 electron transport co 74.2 0.78 2E-05 25.1 -0.2 13 43-55 49-61 (725)
279 PRK08979 acetolactate synthase 73.4 6.3 0.00016 18.5 7.2 110 300-414 192-307 (572)
280 PRK06456 acetolactate synthase 72.4 6.6 0.00017 18.3 6.9 88 301-389 194-287 (572)
281 COG1152 CdhA CO dehydrogenase/ 72.1 0.34 8.7E-06 27.6 -2.5 32 589-624 722-753 (772)
282 PRK06276 acetolactate synthase 71.7 6.8 0.00017 18.2 7.3 111 301-416 190-306 (586)
283 PRK09800 putative selenate red 71.7 3.3 8.5E-05 20.5 2.5 68 40-116 8-76 (928)
284 PRK13409 putative ATPase RIL; 71.0 2.5 6.4E-05 21.4 1.7 86 156-258 15-107 (590)
285 PRK08273 pyruvate decarboxylas 70.3 7.3 0.00019 18.0 5.7 87 300-388 194-285 (597)
286 TIGR01683 thiS thiamine biosyn 69.4 4.6 0.00012 19.5 2.8 37 7-57 1-37 (65)
287 COG3367 Uncharacterized conser 69.1 7.7 0.0002 17.8 4.3 132 323-464 103-238 (339)
288 PRK06546 pyruvate dehydrogenas 69.0 7.8 0.0002 17.8 5.7 85 301-387 188-277 (578)
289 PRK07696 sulfur carrier protei 68.8 7.8 0.0002 17.8 4.0 53 6-74 2-56 (67)
290 PRK09124 pyruvate dehydrogenas 68.6 7.9 0.0002 17.8 6.5 85 301-387 188-277 (574)
291 PRK07524 hypothetical protein; 68.2 8 0.0002 17.7 6.6 87 300-388 187-276 (534)
292 COG0180 TrpS Tryptophanyl-tRNA 66.9 7.4 0.00019 18.0 3.4 16 592-607 155-170 (314)
293 COG1035 FrhB Coenzyme F420-red 66.2 1.5 3.8E-05 23.0 -0.2 21 195-216 4-24 (332)
294 COG3961 Pyruvate decarboxylase 66.1 8.8 0.00022 17.4 5.4 94 300-396 195-297 (557)
295 PRK07064 hypothetical protein; 65.8 8.9 0.00023 17.4 7.2 87 301-390 190-279 (544)
296 TIGR02630 xylose_isom_A xylose 65.6 2.5 6.3E-05 21.4 0.8 48 334-384 84-139 (437)
297 TIGR03393 indolpyr_decarb indo 65.5 9 0.00023 17.3 7.2 90 299-389 190-286 (539)
298 TIGR03268 methan_mark_3 putati 64.9 7.2 0.00018 18.1 3.1 26 7-32 1-26 (503)
299 PRK00969 hypothetical protein; 64.4 8 0.0002 17.7 3.2 39 5-54 1-39 (508)
300 pfam03658 UPF0125 Uncharacteri 64.2 6.5 0.00017 18.4 2.8 50 12-73 16-65 (83)
301 PRK08266 hypothetical protein; 64.1 9.6 0.00024 17.2 5.7 84 301-387 189-272 (531)
302 PRK01777 hypothetical protein; 63.9 6.6 0.00017 18.3 2.8 21 12-32 19-39 (95)
303 cd06394 PBP1_iGluR_Kainate_KA1 63.4 9.5 0.00024 17.2 3.5 82 268-349 11-97 (333)
304 TIGR02060 aprB adenylylsulfate 63.3 2.8 7.2E-05 21.0 0.7 61 153-221 5-70 (138)
305 PRK08156 surface presentation 63.1 10 0.00025 17.0 4.9 16 552-567 247-262 (367)
306 cd01409 SIRT4 SIRT4: Eukaryoti 62.2 10 0.00026 16.9 4.3 44 370-415 199-242 (260)
307 KOG0430 consensus 62.1 10 0.00026 16.9 6.2 102 4-116 2-115 (1257)
308 pfam03990 DUF348 Domain of unk 61.5 11 0.00027 16.9 4.3 38 5-45 2-40 (43)
309 COG1245 Predicted ATPase, RNas 61.3 3.8 9.7E-05 20.1 1.1 119 161-309 19-146 (591)
310 PRK07586 hypothetical protein; 61.3 11 0.00027 16.8 5.5 84 301-386 184-273 (514)
311 cd01616 TGS The TGS domain, na 60.7 7 0.00018 18.1 2.4 53 5-74 2-54 (60)
312 TIGR01660 narH nitrate reducta 56.4 4.1 0.0001 19.8 0.6 20 153-172 11-30 (495)
313 PRK11840 bifunctional sulfur c 55.5 13 0.00034 16.2 3.8 28 5-32 1-28 (327)
314 PRK07710 acetolactate synthase 55.3 13 0.00034 16.1 7.3 86 303-389 204-295 (571)
315 TIGR01372 soxA sarcosine oxida 54.7 14 0.00035 16.1 3.4 89 5-101 24-122 (1026)
316 KOG0063 consensus 53.8 3.9 9.9E-05 20.0 0.1 49 155-213 49-97 (592)
317 pfam02824 TGS TGS domain. The 53.5 8.4 0.00021 17.6 1.8 51 7-74 4-54 (60)
318 PRK00481 NAD-dependent deacety 53.4 14 0.00036 15.9 5.2 42 370-413 172-213 (239)
319 cd01413 SIR2_Af2 SIR2_Af2: Arc 52.9 14 0.00037 15.9 4.3 44 369-414 165-208 (222)
320 COG3340 PepE Peptidase E [Amin 52.3 15 0.00038 15.8 6.9 105 292-408 8-122 (224)
321 TIGR02515 IV_pilus_PilQ type I 51.9 6.5 0.00017 18.4 1.0 20 294-313 41-62 (464)
322 TIGR02290 M3_fam_3 oligoendope 51.1 5.7 0.00015 18.8 0.6 27 283-309 176-202 (600)
323 PRK05702 flhB flagellar biosyn 50.0 16 0.00041 15.6 3.8 53 553-610 260-312 (352)
324 cd01412 SIRT5_Af1_CobB SIRT5_A 49.2 16 0.00042 15.5 4.2 42 370-413 159-200 (224)
325 PRK12468 flhB flagellar biosyn 48.9 17 0.00042 15.5 4.1 12 555-566 262-273 (383)
326 PRK12721 secretion system appa 48.1 17 0.00043 15.4 3.6 53 553-610 253-305 (349)
327 TIGR00314 cdhA CO dehydrogenas 47.0 1.2 3.1E-05 23.7 -3.3 168 214-393 40-257 (795)
328 PRK10076 pyruvate formate lyas 46.7 4.1 0.0001 19.9 -0.7 14 297-310 18-31 (213)
329 PRK13634 cbiO cobalt transport 46.5 18 0.00046 15.2 2.7 79 539-625 183-269 (276)
330 KOG1184 consensus 46.4 18 0.00046 15.2 5.8 114 282-396 180-300 (561)
331 TIGR02661 MauD methylamine deh 45.9 6 0.00015 18.7 0.1 13 370-382 99-111 (189)
332 PRK06298 type III secretion sy 45.8 18 0.00047 15.1 3.8 53 552-609 253-305 (360)
333 COG1754 Uncharacterized C-term 45.3 19 0.00047 15.1 2.5 99 201-308 22-134 (298)
334 pfam01312 Bac_export_2 FlhB Hr 44.9 19 0.00048 15.0 3.8 55 551-610 253-307 (343)
335 cd01411 SIR2H SIR2H: Uncharact 44.6 19 0.00049 15.0 4.3 42 370-414 166-207 (225)
336 TIGR01285 nifN nitrogenase mol 43.4 18 0.00045 15.3 2.1 103 293-396 140-262 (451)
337 PRK07941 DNA topoisomerase I; 43.2 20 0.00051 14.9 2.4 69 111-181 101-174 (933)
338 TIGR00280 L37a ribosomal prote 42.8 18 0.00046 15.2 2.1 24 93-116 21-45 (92)
339 PRK05333 NAD-dependent deacety 42.0 21 0.00053 14.7 4.6 29 301-330 6-34 (285)
340 pfam12593 McyA_C Microcystin s 41.4 16 0.00041 15.5 1.7 30 571-600 3-32 (40)
341 cd01408 SIRT1 SIRT1: Eukaryoti 40.8 22 0.00055 14.6 4.6 38 370-410 170-207 (235)
342 TIGR02064 dsrA sulfite reducta 40.2 9.1 0.00023 17.3 0.3 55 250-310 61-117 (430)
343 COG1150 HdrC Heterodisulfide r 39.8 10 0.00026 17.0 0.5 20 197-216 40-59 (195)
344 TIGR02812 fadR_gamma fatty aci 39.8 23 0.00057 14.5 3.3 14 324-339 43-56 (275)
345 pfam09144 YpM Yersinia pseudot 39.5 23 0.00058 14.5 2.2 49 244-292 24-74 (117)
346 cd01407 SIR2-fam SIR2 family o 39.4 23 0.00058 14.4 4.6 44 370-415 162-205 (218)
347 cd01410 SIRT7 SIRT7: Eukaryoti 39.3 23 0.00058 14.4 4.3 43 369-413 149-191 (206)
348 PRK09108 type III secretion sy 38.8 23 0.00059 14.4 4.2 53 553-610 256-308 (354)
349 PRK13109 flhB flagellar biosyn 38.0 24 0.00061 14.3 3.7 55 551-610 260-314 (358)
350 pfam03660 PHF5 PHF5-like prote 38.0 18 0.00045 15.3 1.5 17 98-114 17-33 (105)
351 cd01667 TGS_ThrRS_N TGS _ThrRS 37.2 25 0.00063 14.2 2.3 24 9-32 6-29 (61)
352 PRK12772 bifunctional flagella 36.8 25 0.00064 14.2 3.9 29 377-406 255-283 (609)
353 TIGR00721 tfx DNA-binding prot 36.6 22 0.00056 14.6 1.8 10 306-315 26-35 (142)
354 COG1251 NirB NAD(P)H-nitrite r 36.0 21 0.00055 14.7 1.6 49 148-196 125-181 (793)
355 cd01668 TGS_RelA_SpoT TGS_RelA 36.0 19 0.00048 15.1 1.3 52 6-74 3-54 (60)
356 KOG4166 consensus 35.9 22 0.00057 14.5 1.7 27 599-625 606-633 (675)
357 COG1140 NarY Nitrate reductase 35.3 10 0.00027 16.9 -0.0 21 152-172 10-30 (513)
358 PRK10509 bacterioferritin-asso 34.5 15 0.00038 15.8 0.6 13 160-172 38-50 (64)
359 PRK06599 DNA topoisomerase I; 34.1 18 0.00046 15.2 1.0 23 153-176 131-153 (776)
360 PRK08780 DNA topoisomerase III 33.5 22 0.00056 14.6 1.4 27 153-180 132-158 (783)
361 PRK07449 2-succinyl-6-hydroxy- 33.3 28 0.00072 13.8 9.3 28 599-626 488-516 (548)
362 TIGR01359 UMP_CMP_kin_fam UMP- 33.2 26 0.00067 14.0 1.7 73 252-342 1-76 (189)
363 pfam02597 ThiS ThiS family. Th 33.1 28 0.00072 13.8 3.1 49 8-73 9-58 (70)
364 PRK08061 rpsN 30S ribosomal pr 33.0 13 0.00034 16.2 0.2 13 152-164 18-30 (61)
365 KOG2096 consensus 32.9 29 0.00073 13.7 3.5 86 214-299 166-269 (420)
366 PRK12773 flhB flagellar biosyn 32.8 29 0.00073 13.7 4.7 29 378-406 293-321 (649)
367 cd01966 Nitrogenase_NifN_1 Nit 32.6 29 0.00074 13.7 7.0 99 284-384 115-232 (417)
368 PRK01310 hypothetical protein; 32.4 29 0.00074 13.7 4.1 52 558-609 16-67 (106)
369 PRK06488 sulfur carrier protei 32.3 29 0.00074 13.7 3.3 36 6-57 2-37 (65)
370 PRK07561 DNA topoisomerase I; 31.1 23 0.00058 14.5 1.1 71 110-182 93-168 (878)
371 cd00118 LysM Lysin domain, fou 30.1 32 0.00081 13.4 2.1 27 12-38 1-27 (46)
372 PRK05474 xylose isomerase; Pro 30.0 22 0.00056 14.5 0.9 56 336-391 86-146 (437)
373 PRK12775 putative trifunctiona 29.6 32 0.00082 13.4 2.5 71 31-111 203-276 (993)
374 KOG2525 consensus 28.8 30 0.00076 13.6 1.4 13 559-571 403-415 (496)
375 pfam07755 DUF1611 Protein of u 28.6 33 0.00085 13.3 4.9 155 293-465 45-203 (302)
376 PRK13568 hofQ putative outer m 28.4 32 0.00082 13.4 1.5 18 293-310 35-52 (385)
377 LOAD_sir2 consensus 28.2 34 0.00087 13.2 4.5 38 372-411 176-213 (217)
378 KOG2415 consensus 28.1 26 0.00066 14.0 1.0 12 201-212 73-84 (621)
379 PRK13651 cobalt transporter AT 27.8 34 0.00088 13.2 3.1 81 538-627 210-297 (304)
380 cd04894 ACT_ACR-like_1 ACT dom 27.8 33 0.00083 13.3 1.5 21 114-134 9-30 (69)
381 TIGR00676 fadh2 5,10-methylene 27.7 32 0.00081 13.4 1.4 29 377-406 154-188 (302)
382 pfam07874 DUF1660 Prophage pro 27.6 14 0.00035 16.1 -0.5 16 151-166 15-30 (64)
383 PHA01976 helix-turn-helix prot 27.6 29 0.00073 13.7 1.2 22 590-611 38-59 (67)
384 PRK12465 xylose isomerase; Pro 27.5 25 0.00064 14.2 0.8 56 336-391 96-156 (445)
385 COG1085 GalT Galactose-1-phosp 27.4 35 0.00089 13.1 2.1 24 221-244 21-52 (338)
386 COG2914 Uncharacterized protei 27.0 35 0.0009 13.1 2.6 21 12-32 19-39 (99)
387 KOG4730 consensus 27.0 36 0.00091 13.1 3.1 79 186-272 14-93 (518)
388 PRK10188 DNA-binding transcrip 26.2 33 0.00083 13.3 1.2 13 334-346 30-42 (240)
389 PRK04020 rps2P 30S ribosomal p 26.2 37 0.00093 13.0 7.8 98 304-419 55-152 (204)
390 pfam07087 DUF1353 Protein of u 25.8 37 0.00095 12.9 2.6 40 7-53 10-50 (92)
391 cd00583 MutH_Sau3AI MutH is a 25.4 34 0.00086 13.2 1.2 10 592-601 138-147 (210)
392 pfam07385 DUF1498 Protein of u 25.1 38 0.00098 12.8 2.5 21 376-398 88-108 (225)
393 pfam03618 DUF299 Domain of unk 24.8 39 0.00099 12.8 3.0 17 277-293 24-40 (255)
394 TIGR01162 purE phosphoribosyla 24.5 39 0.001 12.7 1.9 25 319-343 2-26 (159)
395 PRK12474 hypothetical protein; 24.4 39 0.001 12.7 4.9 27 599-625 478-505 (518)
396 COG2243 CobF Precorrin-2 methy 24.3 40 0.001 12.7 3.0 61 283-343 59-121 (234)
397 TIGR02939 RpoE_Sigma70 RNA pol 24.2 20 0.00051 14.9 -0.2 13 299-311 44-56 (192)
398 TIGR00871 zwf glucose-6-phosph 24.2 40 0.001 12.7 2.6 26 538-565 377-403 (498)
399 LOAD_cdc45 consensus 23.5 41 0.001 12.6 4.4 11 222-232 99-109 (578)
400 TIGR00444 mazG MazG family pro 23.4 41 0.001 12.6 1.7 10 467-476 192-201 (253)
401 PRK09138 DNA topoisomerase I; 23.2 41 0.0011 12.6 1.7 27 153-180 130-156 (887)
402 pfam12419 DUF3670 SNF2 Helicas 23.0 42 0.0011 12.5 2.2 15 285-299 96-110 (140)
403 TIGR00235 udk uridine kinase; 22.9 26 0.00066 14.1 0.2 16 550-565 188-203 (220)
404 COG1779 C4-type Zn-finger prot 22.5 15 0.00038 15.8 -1.1 39 228-272 11-49 (201)
405 KOG3641 consensus 22.5 36 0.00091 13.0 0.8 23 267-289 183-207 (650)
406 TIGR02969 mam_aldehyde_ox alde 22.4 43 0.0011 12.5 2.3 160 6-196 4-203 (1334)
407 TIGR01819 F420_cofD LPPG:Fo 2- 22.2 43 0.0011 12.4 3.7 46 369-414 228-275 (359)
408 KOG1074 consensus 22.2 25 0.00065 14.1 0.0 24 83-106 178-201 (958)
409 cd00296 SIR2 SIR2 superfamily 22.0 44 0.0011 12.4 4.6 43 369-413 163-205 (222)
410 PHA00732 hypothetical protein 21.8 26 0.00066 14.1 0.0 13 105-117 24-37 (79)
411 TIGR02428 pcaJ_scoB_fam 3-oxoa 21.6 45 0.0011 12.4 1.9 22 449-470 69-91 (208)
412 TIGR00354 polC DNA polymerase 21.6 45 0.0011 12.3 1.6 29 537-569 928-956 (1173)
413 PRK02812 ribose-phosphate pyro 21.5 42 0.0011 12.5 1.1 12 333-344 33-44 (331)
414 KOG3120 consensus 21.3 9.7 0.00025 17.1 -2.3 10 556-565 204-213 (256)
415 TIGR02109 PQQ_syn_pqqE coenzym 21.3 37 0.00096 12.9 0.8 56 427-485 116-178 (363)
416 cd07371 2A5CPDO_AB The alpha a 21.3 45 0.0011 12.3 5.4 33 293-327 19-51 (268)
417 COG2115 XylA Xylose isomerase 21.2 40 0.001 12.7 0.9 53 336-391 89-149 (438)
418 PRK02797 4-alpha-L-fucosyltran 21.1 45 0.0012 12.3 1.8 94 378-473 105-206 (358)
419 TIGR01208 rmlA_long glucose-1- 21.1 45 0.0012 12.3 2.0 91 286-390 22-114 (361)
420 PRK00120 putative deoxyribonuc 20.8 46 0.0012 12.2 1.6 11 198-208 68-78 (197)
421 TIGR00829 FRU PTS system, Fru 20.7 33 0.00083 13.3 0.3 19 369-388 46-64 (85)
422 COG1377 FlhB Flagellar biosynt 20.7 46 0.0012 12.2 4.1 51 554-609 261-311 (363)
423 PRK09335 30S ribosomal protein 20.6 26 0.00066 14.0 -0.2 67 155-259 20-86 (95)
424 TIGR01761 thiaz-red thiazoliny 20.6 47 0.0012 12.2 1.4 81 379-481 96-183 (378)
425 pfam06397 Desulfoferrod_N Desu 20.5 43 0.0011 12.4 0.9 18 195-212 6-23 (36)
426 TIGR02569 TIGR02569_actnb cons 20.5 39 0.001 12.8 0.7 37 261-301 41-79 (279)
427 COG2906 Bfd Bacterioferritin-a 20.4 37 0.00093 13.0 0.5 12 161-172 38-49 (63)
428 pfam00253 Ribosomal_S14 Riboso 20.4 29 0.00074 13.7 0.0 11 153-163 14-24 (55)
429 COG1052 LdhA Lactate dehydroge 20.3 47 0.0012 12.2 3.7 11 549-559 194-204 (324)
430 cd00974 DSRD Desulforedoxin (D 20.0 44 0.0011 12.4 0.9 18 195-212 4-21 (34)
No 1
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=0 Score=1684.47 Aligned_cols=676 Identities=66% Similarity=1.071 Sum_probs=648.0
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 04999999999968887588999986895461212799964560004799971798870200265664566376668537
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPE 83 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~ 83 (700)
||+|+|||++|+|++|+||||||+++||+||||||||+|+|+||||||||||||..|||++||+|||+|||+
T Consensus 1 Mv~l~Idg~~~~v~~g~til~A~~~~Gi~IP~fCyh~~L~~~g~CR~ClVeve~~~pk~v~sC~t~v~~gm~-------- 72 (680)
T PRK09130 1 MVKLTIDGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMV-------- 72 (680)
T ss_pred CCEEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCE--------
T ss_conf 958999999999699996999999759985625689994989855156999739968767310877899999--------
Q ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCH
Q ss_conf 98199899999999999998278998877888788837998998389867477756778788856021006432901002
Q gi|254780859|r 84 VFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTR 163 (700)
Q Consensus 84 v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~R 163 (700)
|+|+||+|+++||+||||||+|||||||||||||||+||||++.||++++||.++||.++++++||||.+||||||||+|
T Consensus 73 v~t~s~~v~~~r~~vle~ll~nHPlDCpiCd~~GeC~LQd~~~~~g~~~~r~~~~kr~~~~~~~gp~i~~~~~rCI~C~R 152 (680)
T PRK09130 73 IKTNTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRFHENKRAVEDKYMGPLVKTAMTRCIHCTR 152 (680)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCH
T ss_conf 99799999999999999998379977986788887779999998689976567667677655689624305320422544
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf 36454320687400333066641266205875556546622201212101223323334443023522012116886436
Q gi|254780859|r 164 CVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAI 243 (700)
Q Consensus 164 CVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i 243 (700)
|||||+||+|.++||+++||++++|+||++++|+|||||||||+|||||||||||+|++|||||++++|||++|++||+|
T Consensus 153 CVR~~~ev~g~~~lg~~~RG~~~~i~t~~~~~~~se~sGn~idvCPvGALtskp~~f~aRpWel~~~~sic~~c~vGcni 232 (680)
T PRK09130 153 CVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSNI 232 (680)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHCEECCEEECCCCCCCCC
T ss_conf 67776403687557553036656767555787776445332320664442356401357740021023040245788773
Q ss_pred EEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCC-CCEEEEE
Q ss_conf 675159999885247888777741135542210000000011011002222023241456688875201344-5314785
Q gi|254780859|r 244 RIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDYALKAIKSAVLSSD-VKLGAVV 322 (700)
Q Consensus 244 ~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~-~~~g~~~ 322 (700)
++++|+++|+||+|+.|+++|++||||||||+||++++|||++||+|++|+|+++||||||+.++++|++++ +++|+++
T Consensus 233 ~v~~r~~~v~Rv~pr~n~~vN~~wlcdKgRF~~d~l~~~RL~~PlIR~nG~l~~~sW~eAL~~ia~~l~~~~~~~i~~i~ 312 (680)
T PRK09130 233 RVDTRGREVMRILPRVNEEVNEEWISDKTRFSYDGLKRQRLDRPYVRKNGKLVPASWPEAFAAIAAKIKGTDGEKIAAIA 312 (680)
T ss_pred EEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCHHHHCCCEEECCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 79742999988447788876765136776010345512130376573399266669999999999998724876459995
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 04323235554788986368772420233444664340125467787877401857999738532257310257789997
Q gi|254780859|r 323 GDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWR 402 (700)
Q Consensus 323 g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~ 402 (700)
|+++|+|++|++|+|++.|||+|+||++....+... .++++.++++++||++||+||+||+||+++||++++|||||++
T Consensus 313 s~~~t~Ee~y~lqKl~~~lGt~niD~~~~~~~~~~~-~~~~~~~n~si~dIe~aD~illiGsNp~~e~PvL~~RIRka~~ 391 (680)
T PRK09130 313 GDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDPS-LRASYLFNTTIAGIEEADALLLIGANPRQEAPVLNARIRKRWR 391 (680)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCEEEEECCCCCHHCHHHHHHHHHHHH
T ss_conf 587771999999999987399752212422124710-0245334887656854898999857841113199999999998
Q ss_pred CCCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 59970661685012233443048986788888268778899987235310235443321047469898989998874105
Q gi|254780859|r 403 RGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGI 482 (700)
Q Consensus 403 ~g~~~I~vi~~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~i 482 (700)
+|+.+|+++++..+++|.+.+++.+.+.|.+++++.+++++.|++|++|+|++|++++++.++...+.++.+|+..+|++
T Consensus 392 ~g~~~I~~ig~~~dlt~~~~~lG~~~~~L~~l~~~~~~~a~~l~~ak~p~ii~G~~~~~~~~~~~i~~~~~~la~~~g~~ 471 (680)
T PRK09130 392 AGGLKVGLIGEAADLTYPYEYLGAGPDTLADLASGKHAFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAV 471 (680)
T ss_pred CCCCEEEECCCCCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 59966997386401222065508788999999836199999998277988998431213778999999999999996897
Q ss_pred CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHH-HCCCEEEECCCCHHHCC-CCCCEEEHHHHHHHHHHHHCCEEE
Q ss_conf 8533475424675310452101776586523688886-01675998076422016-654345022116666887455770
Q gi|254780859|r 483 SDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNIL-DKTDIVFLLGADELDFS-DKQALTVYIGSHGDRGAQSADVIL 560 (700)
Q Consensus 483 g~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~-~~~~~l~~~g~d~l~~~-~~~~fvV~~d~~~t~tA~~ADVVL 560 (700)
++.|+|+++|++++|++|++|||++|..++.+..+++ ++++++|++|+|+++.. .+.+|+||||+|+|+||++|||||
T Consensus 472 ~~~~~G~n~L~~~an~vGa~d~G~~p~~~g~~~~~i~~g~ik~l~llG~D~~~~~~~~~~FvV~qd~~~~~tA~~ADVVL 551 (680)
T PRK09130 472 RDGWNGFNVLHTAASRVGALDLGFVPGEGGKDAAEMLSGALDVLYLLGADEVDFSKLKGAFVIYQGHHGDRGAHRADVIL 551 (680)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHCCEEE
T ss_conf 77775403144455556554027788975102999856996689990788202325579879997266882664493998
Q ss_pred CCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 47862024720882088674204432885557407999999999807799687989999999997811105542242211
Q gi|254780859|r 561 PGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSAT 640 (700)
Q Consensus 561 P~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~~~~~~~~~~~ 640 (700)
|+++|+||+|||||+|||+|+++||++|||+|||||+|+++||++||.+|+|++++|||+||++.+|+|.+++++.++.+
T Consensus 552 Paaa~~Ek~GTftN~EgRvQ~~~kav~PpGeAr~DW~Il~~La~~lG~~~~y~~~~~i~~~i~~~~p~~~~~~~~~~~~~ 631 (680)
T PRK09130 552 PGAAYTEKSGTYVNTEGRVQLANRAVFPPGEAKEDWAILRALSDVLGKKLPYDSLAQLRAKLAAEVPHFAAIDQIVPSAA 631 (680)
T ss_pred ECCCCCCCCEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 38986646624897257417005464898656389999999999839999999999999999874943035664353200
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH
Q ss_conf 232112334444465631112246312489885238999999998776
Q gi|254780859|r 641 DGIYALAKKVGKMQKRNFVSTVENFYLANSIARASATMAQCSLVAQSC 688 (700)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~nfY~td~isr~S~tM~~c~~~~~~~ 688 (700)
......+.....+.+.+|++.++||||||+|||+|+||++||++.+..
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~fY~t~~Isr~S~tM~~cs~~~~~~ 679 (680)
T PRK09130 632 DIKALAAKSGGKLSKAPFTSPVKDFYLTNPIARASATMAECSALASGR 679 (680)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHCCHHHHHHHHHHHCC
T ss_conf 122113332354346765677777000677666029999988554325
No 2
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G; InterPro: IPR010228 This entry represents the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0051536 iron-sulfur cluster binding.
Probab=100.00 E-value=0 Score=1475.69 Aligned_cols=588 Identities=54% Similarity=0.884 Sum_probs=553.5
Q ss_pred EEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC-----------CCCCCCCC--CCCCC
Q ss_conf 999999999688875889999868954612127999645600047999717988-----------70200265--66456
Q gi|254780859|r 7 LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS-----------KPQASCAM--NVSDL 73 (700)
Q Consensus 7 ~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~-----------k~~~sC~t--~v~~g 73 (700)
|+|||++++|++|+||||||+++||+||||||||+|+|+|||||||||||+.+| ||+||||| ||.+|
T Consensus 1 ~~iDg~~~~V~~g~~vlqAc~~~G~~IPrFC~H~~L~~AGnCRMCLVE~~~~~~dk~GnfifWfPKp~asCa~~~pv~~G 80 (715)
T TIGR01973 1 IFIDGKELEVPKGTTVLQACLKAGIEIPRFCYHEKLSIAGNCRMCLVEVEKDRPDKKGNFIFWFPKPVASCAMQAPVGDG 80 (715)
T ss_pred CEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHCCCCEEEEECCCCCCCCCCEEEECCHHHHHHCCCCCCCCC
T ss_conf 97898678845887289999965898985423666662000111216645789886346677433135542035878786
Q ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCHH-
Q ss_conf 63766685379819989999999999999827899887788878883799899838986747775-6778788856021-
Q gi|254780859|r 74 RAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEE-KRAVEDKSIGPLV- 151 (700)
Q Consensus 74 m~~~~~~g~~v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~-k~~~~~~~~~p~i- 151 (700)
| +|+|+||+|++||++||||||+|||||||||||||||||||||+.||.+.|||.+. ||.++++++||||
T Consensus 81 m--------~i~t~s~~v~kar~gVmEFLLiNHPLDCPiCDqGGeCdLQD~a~~yG~~~sRf~e~GKR~~~~~~~GPliv 152 (715)
T TIGR01973 81 M--------KISTNSEKVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKGKRTVEDKYLGPLIV 152 (715)
T ss_pred E--------EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCEE
T ss_conf 4--------89987979998863578999746788878567888861006617764787513214433446888887203
Q ss_pred CCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEEE
Q ss_conf 00643290100236454320687400333066641266205875556546622201212101223323334-44302352
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTG-RSWELTKT 230 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~-Rpwel~~~ 230 (700)
+++|||||||||||||.+||+|..+||++|||++++|+||.+++|+||||||+||||||||||||||+|++ |||||+++
T Consensus 153 ~t~M~RCI~CtRCVRF~~evAG~~~LG~~gRG~~~~igty~~~~l~SElSGN~id~CPVGALTsKp~~F~anR~WEl~~~ 232 (715)
T TIGR01973 153 KTEMTRCIHCTRCVRFANEVAGVEELGVIGRGNHVEIGTYEGKTLESELSGNLIDICPVGALTSKPYAFKANRPWELKST 232 (715)
T ss_pred EECCCCCCCCCEEEEEEEECCCCCEECCEECCCCCEEEEEECCEECCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 00123453430012231101897012125178731686430770022445352677675531785147632676001347
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHC-CCCHHHEE-CCCCEEECCHHHHHHHHH
Q ss_conf 2012116886436675159999885247888777741135542210000000-01101100-222202324145668887
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQ-RLDCPYAR-INGRLKPVSWDYALKAIK 308 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~d-RL~~PliR-~~g~~~~iSWdeAl~~ia 308 (700)
+|||.||++||+|+|+.|+|||+||+||.|+.|||.||||||||+||+++.+ ||++||+| .+|+|+++||+|||+.++
T Consensus 233 ~Sic~~ds~GsNI~vd~R~gev~RilpR~n~~iNE~WlsDk~RF~yd~l~~~~RL~~Pl~rn~~g~l~~~sW~eA~~~~a 312 (715)
T TIGR01973 233 PSICVHDSVGSNIRVDERNGEVMRILPRENEEINEEWLSDKGRFGYDGLKRQDRLTKPLVRNKEGKLQEVSWAEALAIAA 312 (715)
T ss_pred CCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHH
T ss_conf 88765478876220101144678831677850020432377201010144577678881782688568715899999999
Q ss_pred HHHCCCC-----CCEEE--EECCCCCCHHHHHHHH-HHHH-CCCCCEECCCCCCCCC---H-HHHCCCCCCC-----CCH
Q ss_conf 5201344-----53147--8504323235554788-9863-6877242023344466---4-3401254677-----878
Q gi|254780859|r 309 SAVLSSD-----VKLGA--VVGDLSSVEEIYALKL-LMQS-LGCENFDCRQNGEYLD---P-SYGRASYIFN-----PTI 370 (700)
Q Consensus 309 ~~L~~~~-----~~~g~--~~g~~~t~Ee~y~~k~-l~~~-lGt~nid~~~~~~~~~---~-~~~~~~~~~~-----~~i 370 (700)
++|+.++ +++++ ++|+++|+|++|++|+ |++. +|++|+|++.+..... . ...++.+++| +|+
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~g~~~~~E~~~al~~lL~~~~lg~~n~~~~~~~~~~~~AFs~~~~~~~~l~n~~~~~~tl 392 (715)
T TIGR01973 313 KKLKAIKAAHGSSKIGGRFIAGPRSSLEELFALKKLLVRAALGSENLDLRIRNYELEEAFSCADLRANYLFNNGIAVTTL 392 (715)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99985112566341257775223012878999999875332275311024433320224334677788764898455755
Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCC-CEEECCC-CCHHHHHH----------HHCCCCCHHHHHHHH---
Q ss_conf 77401857999738532257310257789997599-7066168-50122334----------430489867888882---
Q gi|254780859|r 371 QGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGN-FPIAVIG-DVGELRYK----------YEHLGNGSEALADLV--- 435 (700)
Q Consensus 371 ~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~-~~I~vi~-~~~~l~~~----------~~~l~~~~e~l~~~~--- 435 (700)
.+||++|+|||+|+|+++|+|++++||||++++|+ .++.+++ ...+++|. +.+++...+.|.+++
T Consensus 393 ~~~e~~D~~ll~G~d~r~e~P~l~lrlR~~~~k~~~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~g~~~~~L~~ia~~~ 472 (715)
T TIGR01973 393 AEIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGQAKVALIGIEKWDLTYPGNTSRKAKNLVFHPGLSPKKLDDIAEAS 472 (715)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH
T ss_conf 54312786899758864027899999998976388218997286765641113345652033234050034799999999
Q ss_pred CCCCH----------------------------------HHHHHHH--CCCCHHHHH---HHHHHCCCCHHHHHHHHHHH
Q ss_conf 68778----------------------------------8999872--353102354---43321047469898989998
Q gi|254780859|r 436 SGQHP----------------------------------FFKKLQE--ATRPLIIVG---QGALRASDNVEVMANIAKLV 476 (700)
Q Consensus 436 ~g~~~----------------------------------~~~~l~~--a~~~~ii~G---~g~~~~~~g~~~~~al~~l~ 476 (700)
.+.+. +++.|+. |++|+||+| ..+..|.++...+.+..+++
T Consensus 473 ~~~~~~~~~~~~~~v~~~~~as~p~V~~Ldsel~~~a~r~~~~l~~~~Ak~p~ii~G~~l~~~~~~~~~~~~~~~~~~~~ 552 (715)
T TIGR01973 473 SGAHSDDQVVLGAEVAKAIDASAPKVDLLDSELKELAKRIAAALKAKAAKKPLIIVGERLASAISHLDGAALLSAAANIA 552 (715)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCHHHHHHHHHHHHH
T ss_conf 74271000012689999987135333202589999999999999997358838987200344423401368999999867
Q ss_pred HHHHCCC----CCCCCCCCCCCCCCCCCCHHCCCCCCC---------CCCCHHHHH---------HCCCEEEECCCCHH-
Q ss_conf 8741058----533475424675310452101776586---------523688886---------01675998076422-
Q gi|254780859|r 477 IDVGGIS----DSWNGFAVLHTVASRVGALDLGFVPAD---------DTINAMNIL---------DKTDIVFLLGADEL- 533 (700)
Q Consensus 477 ~~~G~ig----~~g~G~~~L~~~~n~~Ga~d~g~~P~~---------~~~~~~~~~---------~~~~~l~~~g~d~l- 533 (700)
..++.+. ..|.|++.++..+|..|+.++|..|.. .+.++..++ ++++++|++|.|+-
T Consensus 553 ~~~~~~~~~hA~~w~g~~~~~~~a~~~g~~~~g~~~~~~~gaa~~g~~~~~a~~~~~~~~~~~~~~~~~~~~llg~d~~~ 632 (715)
T TIGR01973 553 KVIKVRRKNHADEWNGLNILSSRANSVGLLDLGFEPAREEGAAVLGVAGADAAAGLASLLNLVKSGAADALFLLGADLER 632 (715)
T ss_pred HHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 77405687323562256763011334677864355578623567630463068999877533342168889993687232
Q ss_pred ----------HCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCC----CCCHHHHHH
Q ss_conf ----------016654345022116666887455770478620247208820886742044328855----574079999
Q gi|254780859|r 534 ----------DFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPG----DAKEDWEII 599 (700)
Q Consensus 534 ----------~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~g----eak~dw~Il 599 (700)
++.++..|+||+|||.|+|++.||||||+++|+||+|||+|+|||+|++++++.|+| ++|+||+||
T Consensus 633 ~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~AdviLP~~~~~Ek~Gt~vN~EGR~Q~~~~~~~~~~~~~~~~~~dw~~L 712 (715)
T TIGR01973 633 DSALDKTARAALSKADAFIIYQGHHGTETAEKADVILPGAAFTEKSGTYVNLEGRAQRFEKAVKPPGLKSREAREDWRIL 712 (715)
T ss_pred HHCCCHHHHHHHHCCCCCEEEECCCCCCHHHHCCEECCCCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHCCCHHHHHH
T ss_conf 20486678998524786389836444200212356414431555374134313687765101386001001244058998
Q ss_pred HHH
Q ss_conf 999
Q gi|254780859|r 600 CAL 602 (700)
Q Consensus 600 ~~L 602 (700)
+.|
T Consensus 713 ~~L 715 (715)
T TIGR01973 713 RAL 715 (715)
T ss_pred HHC
T ss_conf 609
No 3
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=0 Score=1420.15 Aligned_cols=676 Identities=37% Similarity=0.616 Sum_probs=583.8
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 04999999999968887588999986895461212799964560004799971798870200265664566376668537
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPE 83 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~ 83 (700)
||+|+|||++|+|++|+||||||+++||+||+|||||+|+|+|+|||||||||| .+|+++||+|||+||| +
T Consensus 1 mv~~~idg~~~~~~~g~til~aa~~~gi~iP~~C~~~~l~~~g~Cr~C~Vev~~-~~~~~~aC~~~~~~gm--------~ 71 (777)
T PRK09129 1 MVEIEIDGKKVEVPEGSMVIEAADKAGIYIPHFCYHKKLSIAANCRMCLVEVEK-APKPLPACATPVTDGM--------K 71 (777)
T ss_pred CCEEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCCCCCCCCCC--------E
T ss_conf 948999999999699996999999759987756789994989857147999899-8465614187889998--------8
Q ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCH
Q ss_conf 98199899999999999998278998877888788837998998389867477756778788856021006432901002
Q gi|254780859|r 84 VFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTR 163 (700)
Q Consensus 84 v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~R 163 (700)
|+|+||+|+++||++|||||+|||||||+|||+|||+|||+++.||.+.+||.++||.++++++||||.+||||||+|+|
T Consensus 72 v~t~~~~~~~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~r 151 (777)
T PRK09129 72 VRTRSEKAVKAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTR 151 (777)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCH
T ss_conf 99499999999999999998569977886888887689999998689865566666677776789635624651410557
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf 36454320687400333066641266205875556546622201212101223323334443023522012116886436
Q gi|254780859|r 164 CVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAI 243 (700)
Q Consensus 164 CVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i 243 (700)
|||||+||+|..+|++.+||++++|+++.+++++|+|||||||+|||||||||||+|++|||||++++|||+||++||+|
T Consensus 152 Cvr~c~e~~~~~~~~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CP~GAL~~k~~~~~~R~wel~~~~TiC~~C~vGC~i 231 (777)
T PRK09129 152 CVRFGQEIAGVMELGMMGRGEHSEITTFVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSLGSNL 231 (777)
T ss_pred HHHHHHHHCCCEEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEECCCCCCCCCE
T ss_conf 88898763586089999506753021247986541222315654564413056421357740103678667888877844
Q ss_pred EEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCC-----C
Q ss_conf 6751599998852478887777411355422100000-000110110022220232414566888752013445-----3
Q gi|254780859|r 244 RIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDV-----K 317 (700)
Q Consensus 244 ~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~-----~ 317 (700)
++++|+|+|+||+|++++++|+||||+||||+|++++ +|||++||+|+||+|+++||||||++||++|+++++ +
T Consensus 232 ~v~~r~~~v~rv~p~~~~~vN~g~LC~KGRf~~~~~~spdRL~~PLiR~~G~~~~vSWdEAld~iA~kl~~i~~~~G~~s 311 (777)
T PRK09129 232 VVHVKNNRVMRVVPRENEAVNECWISDRDRFSYEGLNSEDRLTKPMIKQGGEWKEVDWETALEYVAEGLKGIIEDHGADA 311 (777)
T ss_pred EEECCCCEEEEEECCCCCCCCCCEECCCCCEEECCCCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 78512998998526888888765235664433211467006553565059947771899999999999999998749872
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 1478504323235554788986368772420233444664340-125467787877401857999738532257310257
Q gi|254780859|r 318 LGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNAR 396 (700)
Q Consensus 318 ~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~r 396 (700)
+|+++|++.|+|++|++++|++.+||+|+|++.+.+......+ .+...++.+++||++||+||+||+||+++||++++|
T Consensus 312 va~l~s~~~t~Ee~yl~~kf~r~lGT~NiD~~~r~~~~~~~~~~~~~~~~~~~i~Di~~ad~ilviGsN~~e~~Pvl~~r 391 (777)
T PRK09129 312 IGALASPHSTLEELYLLKKLARGLGSGNIDHRLRQQDFSDDAAASGAPWLGMPIAELSNLDAVLVVGSNLRKEHPLLAAR 391 (777)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCEEEEECCCHHHHHHHHHHH
T ss_conf 99992698768999999999998199874564123431122443147767998889974997999778858854799999
Q ss_pred HHHHHHCCCCEEECCCCCHHHHHHHHCC---CCC--HHH---------------HHHHHCCC------CHHHHHHHHCCC
Q ss_conf 7899975997066168501223344304---898--678---------------88882687------788999872353
Q gi|254780859|r 397 IRKRWRRGNFPIAVIGDVGELRYKYEHL---GNG--SEA---------------LADLVSGQ------HPFFKKLQEATR 450 (700)
Q Consensus 397 irka~~~g~~~I~vi~~~~~l~~~~~~l---~~~--~e~---------------l~~~~~g~------~~~~~~l~~a~~ 450 (700)
||+|+++|++.|++++...++.+...+. .++ ... +.+++.+. .++++.|..+++
T Consensus 392 ir~A~~~GaklividPr~~d~~~~~~~~~~v~p~~~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~l~~a~~ 471 (777)
T PRK09129 392 LRQAAKNGAKLSALNPVDDDFLFPLAQRIIVAPSALADALAGVAAAVAQAKGVALPEALAGVEASDAARAIADSLASAER 471 (777)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999779979998987725666641275368825999999999999873544406777358879999999999860688
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHH-CCCEEEECC
Q ss_conf 1023544332104746989898999887410585334754246753104521017765865236888860-167599807
Q gi|254780859|r 451 PLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILD-KTDIVFLLG 529 (700)
Q Consensus 451 ~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~-~~~~l~~~g 529 (700)
++|++|.++.++.++.....++..|+..+|. .++.+...+|.+|++++|.+|...+.+..+|++ +++++|++|
T Consensus 472 ~~i~~G~~~~~~~~~~~~~~~~~~l~~~~G~------~~g~l~~~~N~~Ga~~~G~lP~~~g~~~~~ml~g~ikal~v~g 545 (777)
T PRK09129 472 AAVLLGNLAVNHPQAATLRALAQWIAKLTGA------TLGFLTEAANSVGAHLAGALPGKGGLNAAAMLAQPRKAYLLLN 545 (777)
T ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEEEC
T ss_conf 3999880364486799999999999898698------4142798540377786465999888799999578665899966
Q ss_pred CCHH----------HCCCCCCEEEHHHHHHHHHHH-HCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 6422----------016654345022116666887-45577047862024720882088674204432885557407999
Q gi|254780859|r 530 ADEL----------DFSDKQALTVYIGSHGDRGAQ-SADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEI 598 (700)
Q Consensus 530 ~d~l----------~~~~~~~fvV~~d~~~t~tA~-~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~I 598 (700)
.||+ +.+++.+|+|++|+|+|+||. +||||||+++|+||+|||+|+|||+|+++|+++|||++||||+|
T Consensus 546 ~nP~~s~pd~~~~~~aL~~ldflVv~D~f~teta~~~ADVVLPaas~~Ek~Gt~tN~EgRvQ~~~~av~P~Gear~dW~I 625 (777)
T PRK09129 546 VEPELDFADPAQARAALNQAEFVVALSPFASASTRDYADVLLPIAPFTETSGTFVNAEGRVQSFKGVVKPLGEARPAWKV 625 (777)
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHCCEECCCCCCCCCCCCEECCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 57123676889999998559929998153781256537486247664344565675377577013566996225568899
Q ss_pred HHHHHHHHCCC-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHH
Q ss_conf 99999980779-96879899999999978111055422422112321123344444656311122463124898852389
Q gi|254780859|r 599 ICALADELKCS-LPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVSTVENFYLANSIARASAT 677 (700)
Q Consensus 599 l~~La~~LG~~-~~~~~~~ei~~ei~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nfY~td~isr~S~t 677 (700)
+++||++||++ |+|++.+++++|+....|.+..++........ .........+ ....-..+|.+|.++|++..
T Consensus 626 l~~La~~lg~~~f~~~~~~ei~~e~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l----~~~~~~p~y~~~~~~rr~~~ 699 (777)
T PRK09129 626 LRVLGNLLGLPGFDYESSEEVRAEALGDAHVTSRLSNALSAQPA--RAAGAANGGL----ERVADVPIYRTDALVRRAAP 699 (777)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCC----CCCCCCCEECCCCCCCCCHH
T ss_conf 99999985889889899999999987418864333556666667--7778898861----02567741138874356876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999998776666888776409
Q gi|254780859|r 678 MAQCSLVAQSCEKRIFDSAKELG 700 (700)
Q Consensus 678 M~~c~~~~~~~~~~~~~~a~~~~ 700 (700)
|.+........--...+.|++||
T Consensus 700 L~~~~~~~~~~v~InP~dAa~lG 722 (777)
T PRK09129 700 LQLTADAKAAAARLNAELAAKLG 722 (777)
T ss_pred HHHCCCCCCCEEEECHHHHHHCC
T ss_conf 67457789988998999999769
No 4
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=0 Score=1410.45 Aligned_cols=669 Identities=31% Similarity=0.486 Sum_probs=546.4
Q ss_pred CCCEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61049999999999688875889999868954612127999645600047999717988702002656645663766685
Q gi|254780859|r 2 QMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGEL 81 (700)
Q Consensus 2 ~~mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g 81 (700)
.-||+|+||||+|+|++|+||||||+++||+||+|||||+|+|+|+|||||||||| .+|+++||+|||+|||+
T Consensus 14 ~~mv~l~Idg~~v~v~~g~til~aa~~~Gi~IP~fC~h~~L~~~g~CR~ClVev~g-~~~~~~sC~tpv~~Gm~------ 86 (809)
T PRK07860 14 PELVTLTIDGVEVSVPKGTLVIRAAELIGIQIPRFCDHPLLDPVGACRQCLVEVEG-QRKPLASCTTTVTDGMV------ 86 (809)
T ss_pred CCCEEEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCCCCCCCCCCE------
T ss_conf 88069999999999699998999999749985656799995988866452899899-96788061876899988------
Q ss_pred CEEEEC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCHHCCCHHHC
Q ss_conf 379819--9899999999999998278998877888788837998998389867477756778788-8560210064329
Q gi|254780859|r 82 PEVFTK--SSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDK-SIGPLVKTVMNRC 158 (700)
Q Consensus 82 ~~v~t~--s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~-~~~p~i~~d~~rC 158 (700)
|+|+ ||+|+++||+||||||+|||||||+|||||||+|||+++.||++.+||.++||+++++ +++|+|.+|||||
T Consensus 87 --V~T~~~s~~~~~~r~~vlE~ll~nHpldCpvCd~gGeC~LQd~~~~~G~~~~r~~~~kr~~~~~~~~~~~i~~d~~rC 164 (809)
T PRK07860 87 --VRTQLTSPVADKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISAQVLLDRERC 164 (809)
T ss_pred --EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf --874389999999999999999857998898789889868999999868997667776657888767787424067736
Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 01002364543206874003330666412662058755565466222012121012233233344430235220121168
Q gi|254780859|r 159 IHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDA 238 (700)
Q Consensus 159 I~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~ 238 (700)
|||+||||||+||+|..+|++.+||++++|+++.+.+|+|+|||||||+|||||||||+|+|++|||||++++|||+||+
T Consensus 165 I~C~RCVR~c~ev~G~~~l~~~~RG~~~~I~~~~~~~l~s~~sGncv~vCPvGALt~k~~~~~aR~Wel~~~~TvC~~C~ 244 (809)
T PRK07860 165 VLCARCTRFSDQIAGDPFIELQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCEHCA 244 (809)
T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCEECCCCC
T ss_conf 62818999998644874685404577564464589866653105366547622014651120277436576221468877
Q ss_pred CCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEE-CCCCEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 864366751599998852478887777411355422100000-0001101100-22220232414566888752013445
Q gi|254780859|r 239 LGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYAR-INGRLKPVSWDYALKAIKSAVLSSDV 316 (700)
Q Consensus 239 ~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR-~~g~~~~iSWdeAl~~ia~~L~~~~~ 316 (700)
+||+|++++|+|+|+||+|++|+++|+||||+||||+|+++| +|||++||+| .+|+|+++||||||++||++|+++++
T Consensus 245 vGC~i~v~~r~g~v~rv~~~~~~~vN~g~LC~KGRfg~~~v~s~dRLt~PLiR~~dG~~~~~sWdEAL~~iA~~L~~~~~ 324 (809)
T PRK07860 245 SGCAQRTDHRRGKVLRRLAGDDPEVNEEWNCDKGRWAFTYATQPDRLTTPLVRDADGELVPASWSEALAVAARGLAAARG 324 (809)
T ss_pred CCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 65333340238889996588888877650072202233421660220150541578861107999999999999975236
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHC----CCCCCCCCHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 31478504323235554788986-3687724202334446643401----254677878774018579997385322573
Q gi|254780859|r 317 KLGAVVGDLSSVEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGR----ASYIFNPTIQGIEEADAMLIIGSNPRLEAA 391 (700)
Q Consensus 317 ~~g~~~g~~~t~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~----~~~~~~~~i~die~ad~illiG~Np~~~~P 391 (700)
++|+++|+++|||++|+++||++ .|||+|+|++++.++.....+. ++...+.+++||++||+||+||+||+++||
T Consensus 325 ~~g~l~s~r~tnEe~Yl~qKlaR~~lgTnniD~~ar~~~~~~~~~l~~~~~~~~~~~s~~Die~AD~IlviGsN~~e~hP 404 (809)
T PRK07860 325 RTGVLVGGRLTVEDAYAYAKFARIALGTNDIDFRARPHSAEEADFLAARVAGRGMGVTYADLESAPAVLLVGFEPEEESP 404 (809)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEEECCCHHHCH
T ss_conf 63599668774788888899999734887625666656613788998740578889898999749989999478125576
Q ss_pred CHHHHHHHHHHCCCCEEECCCCCHH--H---HHHHHCCCCCHHH--HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 1025778999759970661685012--2---3344304898678--8888268778899987235310235443321047
Q gi|254780859|r 392 VLNARIRKRWRRGNFPIAVIGDVGE--L---RYKYEHLGNGSEA--LADLVSGQHPFFKKLQEATRPLIIVGQGALRASD 464 (700)
Q Consensus 392 vl~~rirka~~~g~~~I~vi~~~~~--l---~~~~~~l~~~~e~--l~~~~~g~~~~~~~l~~a~~~~ii~G~g~~~~~~ 464 (700)
++++|||||+++++.+|++++++.. + ...+..+.++++. +..+. +...++....+..++++|..+...+.
T Consensus 405 vl~~rirkA~r~~gaklivIdPr~t~~~~~~a~~~l~~~PGtd~all~~l~---~~~~~e~l~~~~~v~~~ge~~a~~~~ 481 (809)
T PRK07860 405 IVFLRLRKAARKHGLPVYAIAPFATRGLTKMSGRLIPTAPGGEAAALDALA---TGAVAELLRTPGAVILVGERLATVPG 481 (809)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH---HHHHHHHCCCCCCHHHHHHHHHCCHH
T ss_conf 999999999985899799988889746888762323268995599999886---78888760386303056667633746
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCC----------------------------CCCCCCCCCHH
Q ss_conf 46989898999887410585334754246753104521017----------------------------76586523688
Q gi|254780859|r 465 NVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLG----------------------------FVPADDTINAM 516 (700)
Q Consensus 465 g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g----------------------------~~P~~~~~~~~ 516 (700)
. +.++..++..+|. .+..+...+|.+|+.++| .+|..++.+..
T Consensus 482 ~---l~a~~~la~~tga------~l~~~~~~~~~~Ga~~~G~lp~~lPG~~~v~~~~~r~~~~~~wgv~~lP~~~G~~~~ 552 (809)
T PRK07860 482 A---LSAAARLADATGA------RLAWVPRRAGERGAVEAGALPTLLPGGRPVADPAARAQVAAAWGVSELPAAPGRDTA 552 (809)
T ss_pred H---HHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 9---9999999987552------777888887656798746373138897535898999999986198756766676789
Q ss_pred HHHH-----CCCEEEECCCCHHHC---------CCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEE
Q ss_conf 8860-----167599807642201---------66543450221166668874557704786202472088208867420
Q gi|254780859|r 517 NILD-----KTDIVFLLGADELDF---------SDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMG 582 (700)
Q Consensus 517 ~~~~-----~~~~l~~~g~d~l~~---------~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~ 582 (700)
+|++ +++++|++|.||.+. +++.+|+|+||+|+|+||++||||||+++|+||+|||||+|||+|++
T Consensus 553 ~ml~a~~~G~ikal~v~g~np~s~pd~~~v~~AL~~ldflVVqD~f~TeTA~~ADVVLPaAs~~Ek~GTftN~EgRvq~~ 632 (809)
T PRK07860 553 GILAAAAAGELDALLVGGVDPADLPDPAAALAALDAVGFVVSLELRHSAVTERADVVFPVAPVAEKAGTFLNWEGRLRPF 632 (809)
T ss_pred HHHHHHHCCCCEEEEEECCCHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEECCCCCEEEE
T ss_conf 99988756984189991688254779899999985379589983258876213648981780445671188338806701
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44328855574079999999998077996879899999999978111055422422112321123344444656311122
Q gi|254780859|r 583 MRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVSTV 662 (700)
Q Consensus 583 ~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (700)
++|++||| ||+||||+.+||++||++++|.+++++++||.+..|-....- ..+. ........+ -....+...-
T Consensus 633 ~~av~ppg-a~~Dw~Il~~lA~~lG~~~~~~~~~~i~~e~~~l~~~~~~~~-~~p~--~~~~~~~~~---~~~~~~l~~~ 705 (809)
T PRK07860 633 EAALRTSA-ALSDLRVLDALADEMGVDLGLPDVEAARAELAALGAWDGKRA-AAPA--VPAAAPPQP---GPGEAVLAGW 705 (809)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCCC--CCCCCCCCC---CCCCEEECCC
T ss_conf 26789988-757999999999985887799899999999996278988889-9998--788888879---9984440555
Q ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 46312489885238999999998776666888776409
Q gi|254780859|r 663 ENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG 700 (700)
Q Consensus 663 ~nfY~td~isr~S~tM~~c~~~~~~~~~~~~~~a~~~~ 700 (700)
.-.|.|..+.+.|+.+.. ......-....+.|++||
T Consensus 706 ~~l~~tG~~~~~~~~L~~--~~~~~~vei~p~DA~~lG 741 (809)
T PRK07860 706 RMLLDDGRLQDGEPHLAG--TARPPVARLSAATAAEIG 741 (809)
T ss_pred CEEECCCCCCCCCHHHCC--CCCCCEEEECHHHHHHCC
T ss_conf 537678740268844504--479977998999999729
No 5
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=0 Score=1368.96 Aligned_cols=616 Identities=28% Similarity=0.467 Sum_probs=533.5
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEE-----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0499999999996888758899998689546121279996456000479997-----17988702002656645663766
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEI-----KGIASKPQASCAMNVSDLRAGPN 78 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVev-----e~~~~k~~~sC~t~v~~gm~~~~ 78 (700)
||+|+||||+|+|++|+||||||+++||+||+|||||+|+|+|+|||||||| +| .+||++||+|||+|||
T Consensus 1 Mv~~~Idg~~~~v~~g~til~aa~~~Gi~IP~~C~~~~l~~~g~CR~ClVev~~~~~~~-~~~~~~sC~t~v~~Gm---- 75 (858)
T PRK08166 1 MATIHVDGKEYEVNGADNLLQACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPEDT-RGRLVMSCMTPATDGT---- 75 (858)
T ss_pred CCEEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC-CCCCCCCCCCCCCCCC----
T ss_conf 94899999999858999699999975998663679999898877722189972267578-8764702077789999----
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHC
Q ss_conf 68537981998999999999999982789988778887888379989983898674777567787888560210064329
Q gi|254780859|r 79 GELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRC 158 (700)
Q Consensus 79 ~~g~~v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rC 158 (700)
+|+|+||+|+++||+||||||+|||||||||||||||+|||+++.||..++||.++||.++++++||||.+|||||
T Consensus 76 ----~V~T~s~~v~~~r~~~le~ll~nHpldCpvCd~~G~C~LQd~~~~~g~~~~r~~~~kr~~~~~~~~p~i~~d~~rC 151 (858)
T PRK08166 76 ----FISIDDEEAKAFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRC 151 (858)
T ss_pred ----EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf ----9997999999999999999984799778837988876899988871998665677787777667897556268836
Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEEEEECCCCC
Q ss_conf 010023645432068740033306664126620587555654662220121210122332333-4443023522012116
Q gi|254780859|r 159 IHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFT-GRSWELTKTDSIDVMD 237 (700)
Q Consensus 159 I~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~-~Rpwel~~~~SvC~~C 237 (700)
|||+||||||+||+|..+|++.||+.+..|+++.+.+++|+|||||||+|||||||+|||+|+ +|||||++++|||+||
T Consensus 152 I~C~rCvR~c~ei~g~~~~~~~g~~~~~~~~~~~~~~~~s~f~Gncv~vCPvGALt~k~~~~~~~R~wdl~~~~SvC~~C 231 (858)
T PRK08166 152 IACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHC 231 (858)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHCCCCCHHCEECCEECCCC
T ss_conf 35755655178654864123563144136426667755661345334307755434642121047722211376346888
Q ss_pred CCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 8864366751599998852478887777411355422100000-000110110022220232414566888752013445
Q gi|254780859|r 238 ALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDV 316 (700)
Q Consensus 238 ~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~ 316 (700)
++||+|++++|+|+|+||+|++++++|+||||+||||+|++++ +|||++||+|++|+|+|+||||||++||++|+++++
T Consensus 232 gvGC~i~v~~r~g~v~rv~~~~~~~vN~g~LC~KGrf~~~~v~~pdRL~~PLiR~~~~~~~vsWdEAL~~iA~kL~~~~~ 311 (858)
T PRK08166 232 SVGCNISPGERYGELRRIENRYNGAVNGYFLCDRGRFGYGYVNLKDRPRQPLQRRGDDFITLNAEQALQAAADILRQSKK 311 (858)
T ss_pred CCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCEEECHHHHHHHHHHHHHHHHH
T ss_conf 77664478503998999965788887677657332413655357541468769638983163299999999999998778
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCC----CCCCCCH-HHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 3147850432323555478898636877242023----3444664-3401254677878774018579997385322573
Q gi|254780859|r 317 KLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQ----NGEYLDP-SYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAA 391 (700)
Q Consensus 317 ~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~----~~~~~~~-~~~~~~~~~~~~i~die~ad~illiG~Np~~~~P 391 (700)
++| ++|+++|||++|++++| +|++|+++.. ..+.... .....++..+++++||++||+||+||+||+++||
T Consensus 312 ~~G-igS~~~t~Ee~yl~~kl---~g~~n~~~~~~~~~~~~~~~~~~~l~~~g~~~~si~Die~ad~ilviGsN~~e~~P 387 (858)
T PRK08166 312 VIG-IGSPRASLESNFALREL---VGAENFYTGIAAGEQERLQLALKVLREGGIYTPSLREIESYDAVLVLGEDLTQTAA 387 (858)
T ss_pred HHC-CCCCCCCHHHHHHHHHH---HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEEEECCHHHHCH
T ss_conf 740-58876333999999998---27786446767427778899998874078878898889648989999387578687
Q ss_pred CHHHHHHHHHHCCCCEEECCCCCHHHHHHHH-CC--------------------------CCCHHH-------HHHH---
Q ss_conf 1025778999759970661685012233443-04--------------------------898678-------8888---
Q gi|254780859|r 392 VLNARIRKRWRRGNFPIAVIGDVGELRYKYE-HL--------------------------GNGSEA-------LADL--- 434 (700)
Q Consensus 392 vl~~rirka~~~g~~~I~vi~~~~~l~~~~~-~l--------------------------~~~~e~-------l~~~--- 434 (700)
++++|||||+++|+++|++++....+..... ++ ....+. ++..
T Consensus 388 vl~~~ir~A~~~ga~~iv~dpr~~~~~~~a~~~~~~~~~~~l~l~~~~~~~l~~ia~~~~~~~~~~~~~~~~~~~~~~~~ 467 (858)
T PRK08166 388 RVALAVRQAVKGKAREMAAAQKVADWQDAAVRNIGQRAKSPLFITNVDPTRLDDIAAWTYRAPPEDQARLGFAIAHALDN 467 (858)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999986698489845776325666676521268981121042066799986321114556676566788753232
Q ss_pred ----HCC--------CCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf ----268--------77889998723531023544332104746989898999887410585334754246753104521
Q gi|254780859|r 435 ----VSG--------QHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGAL 502 (700)
Q Consensus 435 ----~~g--------~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~ 502 (700)
+.+ ....++.|..+++++|++|.+. .+...+.++++++..+|+.+++ .|++++.+++|.+|+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~A~~l~~a~~~~ii~G~~~----~~~~~~~a~~~la~~~g~~g~~-~g~~~l~~~~n~~Ga~ 542 (858)
T PRK08166 468 SAPAVDGLDSELQAKADVIAQALAGAKKPLIISGTSA----GSAAIIEAAANIAKALKGRGAD-VGITLVAPEANSMGLA 542 (858)
T ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC----CCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHH
T ss_conf 2244514560579999999999970889689978787----8779999999999986377998-7663568745521336
Q ss_pred HCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH---------CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEE
Q ss_conf 01776586523688886016759980764220---------166543450221166668874557704786202472088
Q gi|254780859|r 503 DLGFVPADDTINAMNILDKTDIVFLLGADELD---------FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWV 573 (700)
Q Consensus 503 d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~---------~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~ 573 (700)
++|..+....+.... -+++|++|+++.|++. .+++++|+|+||+|+|+||++||||||+++|+||+||||
T Consensus 543 ~~gg~~~~~~~~~~~-~G~ikal~v~~~~~~~~~~~~~v~~aL~~ldflVV~D~f~TeTa~~ADVVLPaas~~Ek~GTft 621 (858)
T PRK08166 543 LLGGGSLEAALEELE-SGRADAVIVLENDLYRRAPAARVDAALAKAPLVIVLDHQRTATMEKAHLVLPAASFAESDGTVV 621 (858)
T ss_pred HHCCCCHHHHHHHHH-CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHCCEEEECCCCCCCCCEEE
T ss_conf 416888899999987-5997789995778555668899999985499499981578851653678942363344564168
Q ss_pred EECCEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 208867420443288555-----74079999999998077-996879899999999978111055422422
Q gi|254780859|r 574 NTEGRVQMGMRAIFPPGD-----AKEDWEIICALADELKC-SLPFSSLSQLRSHLYSHHPHFMQLDEIRPS 638 (700)
Q Consensus 574 N~EgRvQ~~~~av~p~ge-----ak~dw~Il~~La~~LG~-~~~~~~~~ei~~ei~~~~P~~~~~~~~~~~ 638 (700)
|+|||+|+++|+++|++. .+++|+|+..++.+++. .++|.++++|++|+...+|.|.++.+..+.
T Consensus 622 N~ErRvQr~~ka~~P~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ei~~e~~~~~p~~~gi~~~~~~ 692 (858)
T PRK08166 622 NNEGRAQRFFQVYDPAYYDSKTVMLESWRWLHALHSTLLNREVDWTQLDHVIDAVAAAIPQLAGIKDAAPD 692 (858)
T ss_pred ECCCEEEECEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 01460361110459766896123407999999998761578878578999999987557461364211545
No 6
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=100.00 E-value=0 Score=1292.14 Aligned_cols=628 Identities=29% Similarity=0.445 Sum_probs=569.6
Q ss_pred CCCEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61049999999999688875889999868954612127999645600047999717988702002656645663766685
Q gi|254780859|r 2 QMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGEL 81 (700)
Q Consensus 2 ~~mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g 81 (700)
.+||+++|||++++|++|+|||+|++++||+|||+||||.|.|+|+||+|||||+| |+++||+|||.|||+
T Consensus 3 ~~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG---~l~rsCsT~v~dGm~------ 73 (978)
T COG3383 3 EKMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDG---KLVRSCSTPVEDGMV------ 73 (978)
T ss_pred CEEEEEEECCEEEECCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEEECC---CEECCCCCCCCCCCE------
T ss_conf 30699998786875278708999999659855512236787865555368998568---261321554267828------
Q ss_pred CEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCHHCCCHHHC
Q ss_conf 37981998999999999999982789988778887-888379989983898674777567--787888560210064329
Q gi|254780859|r 82 PEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQG-GECDLQDQAIFFGFGSSRYSEEKR--AVEDKSIGPLVKTVMNRC 158 (700)
Q Consensus 82 ~~v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~-GeC~LQd~~~~~g~~~~r~~~~k~--~~~~~~~~p~i~~d~~rC 158 (700)
|+|+|++++++|+.+|++||.||||||++||.+ |+|+|||++..+|.+++||+++++ ..+++.+|||+.+|+|+|
T Consensus 74 --v~t~s~rvk~~r~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qC 151 (978)
T COG3383 74 --VRTNSERVKEARREAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQC 151 (978)
T ss_pred --EECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHE
T ss_conf --961658899999999999986388676124799987508788987298743367665578887556797087562242
Q ss_pred CCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCCC------------
Q ss_conf 01002364543206874003330666412662058755---565466222012121012233233344------------
Q gi|254780859|r 159 IHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSL---TSEMQGNIIDLCPVGALTSKPFAFTGR------------ 223 (700)
Q Consensus 159 I~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~---~~e~~Gncvd~CPvGALt~k~~~~~~R------------ 223 (700)
|+|+||||+|+||||+.+|++.+||+++.|.++.+.++ +|.+||+||++|||+||++|++.++++
T Consensus 152 IlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag~~t~~~~~~~~~ 231 (978)
T COG3383 152 ILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEKSMLGEAGYLTGINEDTLEP 231 (978)
T ss_pred EEHHHHHHHHHHHHCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 42568999987641336998611467760334789755301255457602015605643122220234334555102345
Q ss_pred ---------CCC-----------------EEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCC
Q ss_conf ---------430-----------------235220121168864366751599998852478887777411355422100
Q gi|254780859|r 224 ---------SWE-----------------LTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWD 277 (700)
Q Consensus 224 ---------pwe-----------------l~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d 277 (700)
||. +|+++|||+|||+||++++++|+++|+||+|.+++|+|++.+|+|||||||
T Consensus 232 mid~~k~~eP~~~~~~ais~~e~~mr~~rikktkTvC~yCGvGCsf~vwtkgreilkv~p~~e~paN~~~tCVKGkFgwd 311 (978)
T COG3383 232 MIDLVKKVEPEYGPIFAISEIEAAMRETRIKKTKTVCTYCGVGCSFEVWTKGREILKVQPDPEGPANRISTCVKGKFGWD 311 (978)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCEEEECEECCC
T ss_conf 56553036887452001124666655532102114645557863589986476179842478788776304550210135
Q ss_pred HHHH-CCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHH-HHCCCCCEECCC
Q ss_conf 0000-001101100222202324145668887520134453-----147850432323555478898-636877242023
Q gi|254780859|r 278 GLKV-QRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVK-----LGAVVGDLSSVEEIYALKLLM-QSLGCENFDCRQ 350 (700)
Q Consensus 278 ~~~~-dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~~-----~g~~~g~~~t~Ee~y~~k~l~-~~lGt~nid~~~ 350 (700)
|+++ |||++||||++|.|+|+||||||++||++|.+++++ +|+++|+++||||+|++|||+ +.|||||+|+.+
T Consensus 312 fvns~dRit~PlIR~~~~f~evsWeEAl~~vA~rl~~ik~~yg~dsigfI~Ssk~TNEE~Yl~QKLaR~v~gtNNVDncs 391 (978)
T COG3383 312 FVNSRDRITKPLIREGDRFREVSWEEALDLVASRLREIKEKYGGDSIGFIASSKCTNEENYLMQKLARQVFGTNNVDNCS 391 (978)
T ss_pred CCCCHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 45776673566251289435620999999999998888887386532136147777589999999999974468853201
Q ss_pred CCCCCCHHHHCC----CCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEECCCCCHHHHHH---HH
Q ss_conf 344466434012----5467787877401857999738532257310257789997-599706616850122334---43
Q gi|254780859|r 351 NGEYLDPSYGRA----SYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWR-RGNFPIAVIGDVGELRYK---YE 422 (700)
Q Consensus 351 ~~~~~~~~~~~~----~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~-~g~~~I~vi~~~~~l~~~---~~ 422 (700)
+.|+.+...|+. .+....+|+||+.+|++|+||+||+++|||+++|+|+|.| +|.++|+++.+..+++-. ..
T Consensus 392 R~CqsPa~~gL~rTvG~g~dsgsi~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~ 471 (978)
T COG3383 392 RYCQSPATDGLFRTVGSGADSGSIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFL 471 (978)
T ss_pred HHCCCCCCCCCHHEEECCCCCCCHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 10068644640310543677888888850775999767877668508999999998459749995363667777553005
Q ss_pred CCCCC--------------------HHHHHHHHCCCCH--------------------------HHHHHHHCCCCHHHHH
Q ss_conf 04898--------------------6788888268778--------------------------8999872353102354
Q gi|254780859|r 423 HLGNG--------------------SEALADLVSGQHP--------------------------FFKKLQEATRPLIIVG 456 (700)
Q Consensus 423 ~l~~~--------------------~e~l~~~~~g~~~--------------------------~~~~l~~a~~~~ii~G 456 (700)
|.++| ..++.+.+.++++ +++.+++++..+|+||
T Consensus 472 ~pkpGtd~a~l~AvakyiideGl~D~~Fi~er~~~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~ 551 (978)
T COG3383 472 HPKPGTDLAWLTAVAKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWG 551 (978)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 89999648999999999980785147899864443999998751038878776408998999999999842686589997
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCC---------------------------
Q ss_conf 43321047469898989998874105853347542467531045210177658---------------------------
Q gi|254780859|r 457 QGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPA--------------------------- 509 (700)
Q Consensus 457 ~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~--------------------------- 509 (700)
+|++||..|.+++.+|++|+++|||+|+||.|.+||++++|+||++|||.+|.
T Consensus 552 mGvTqh~~GsdTs~aisNLll~TGN~Grpg~G~~PLRGhNNVQGa~DmGslP~~LPGyq~isdd~~R~kFE~~wGv~i~~ 631 (978)
T COG3383 552 MGVTQHSGGSDTSTAISNLLLLTGNYGRPGAGAYPLRGHNNVQGACDMGSLPDVLPGYQPISDDAVRAKFEEAWGVKIPR 631 (978)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 46021566752799999999985446899877676656576534244566866587752156588999999975887799
Q ss_pred CCCCCHHHHHH-----CCCEEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEE
Q ss_conf 65236888860-----1675998076422----------01665434502211666688745577047862024720882
Q gi|254780859|r 510 DDTINAMNILD-----KTDIVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVN 574 (700)
Q Consensus 510 ~~~~~~~~~~~-----~~~~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N 574 (700)
+++++..+|++ +.+++|+.|+|++ +.+.+.+|+||||.|+|+||+|||||||+++|+||+|||||
T Consensus 632 ePGl~~~~Mlea~~~G~~~amYv~GEd~~~sd~dt~~v~~aL~~ldflVVqD~FLteTA~yAdVvLPas~slEKdGTFtN 711 (978)
T COG3383 632 EPGLDNPEMLEAIEEGKLKAMYVVGEDPLLSDPDTNHVRAALEALDFLVVQDLFLTETANYADVVLPASASLEKDGTFTN 711 (978)
T ss_pred CCCCCCHHHHHHHHCCCEEEEEEECCCCEECCCCHHHHHHHHHHCCEEEEEHHHHHCCCCCCEEEEECCCCCCCCCCEEC
T ss_conf 88887289999986286158999535530037983799999852655886423331211335078316755234675345
Q ss_pred ECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 088674204432885557407999999999807799687989999999997811105542242211
Q gi|254780859|r 575 TEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSAT 640 (700)
Q Consensus 575 ~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~~~~~~~~~~~ 640 (700)
+|||+|+++|+.+|+|++||||||++++|++||.+|+|.|++||++||++++|.|+++++-....+
T Consensus 712 tERRiQrlykvleP~gdsrpDW~Iiq~vA~~lG~~wnY~hpSeIm~EiA~l~P~fAgvsye~Leg~ 777 (978)
T COG3383 712 TERRIQRLYKVLEPLGDSRPDWEIIQEVANALGAGWNYSHPSEIMDEIAALTPSFAGVSYERLEGF 777 (978)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCC
T ss_conf 399999999875466678845899999999835998989878999999863730024418885566
No 7
>KOG2282 consensus
Probab=100.00 E-value=0 Score=1306.26 Aligned_cols=669 Identities=50% Similarity=0.838 Sum_probs=627.0
Q ss_pred CCEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10499999999996888758899998689546121279996456000479997179887020026566456637666853
Q gi|254780859|r 3 MMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELP 82 (700)
Q Consensus 3 ~mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~ 82 (700)
..|.++|||+.|.|++|+||||||..+|++|||||||+||+++|||||||||||+ +|||++||+|||..||
T Consensus 31 ~~ievfvd~~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek-spkpva~campvm~g~-------- 101 (708)
T KOG2282 31 NKIEVFVDDQSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK-SPKPVAACAMPVMKGW-------- 101 (708)
T ss_pred CCEEEEECCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECC-CCCCCHHHCCCCCCCC--------
T ss_conf 2148997780576379748999999867886312323232123660389988024-8871053225445774--------
Q ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCC
Q ss_conf 79819989999999999999827899887788878883799899838986747775677878885602100643290100
Q gi|254780859|r 83 EVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCT 162 (700)
Q Consensus 83 ~v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~ 162 (700)
+|.|+|+.+|+||++||||||.||||||||||||||||||||+|.||.+++||.+.||.+++|++||++++.|+||||||
T Consensus 102 ~iktns~~~kkaregvmefll~nhpldcpicdqggecdlqdq~m~fgsdr~rf~~~kravedknigplvktimtrciqct 181 (708)
T KOG2282 102 KIKTNSDKSKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTEGKRAVEDKNIGPLVKTIMTRCIQCT 181 (708)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 52048667788888899999837998987357888676067675524750345443344323765348999999877577
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCE
Q ss_conf 23645432068740033306664126620587555654662220121210122332333444302352201211688643
Q gi|254780859|r 163 RCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSA 242 (700)
Q Consensus 163 RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~ 242 (700)
|||||..||+|++.||+.|||.+++||||+++.|.||+|||+||+|||||||||||.|++||||+++|+||+.++++|+|
T Consensus 182 rcvrfaseiagv~dlgttgrg~d~qigtyvek~f~selsgniidicpvgaltskpyaf~arpwe~rktesidv~davgsn 261 (708)
T KOG2282 182 RCVRFASEIAGVDDLGTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSN 261 (708)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCEEHHHHCCCC
T ss_conf 88888886438754466667776318899999998761287466423453346863034266200253504334524674
Q ss_pred EEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEEC-CCCEEECCHHHHHHHHHHHHCCC-CCCEEE
Q ss_conf 6675159999885247888777741135542210000000011011002-22202324145668887520134-453147
Q gi|254780859|r 243 IRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARI-NGRLKPVSWDYALKAIKSAVLSS-DVKLGA 320 (700)
Q Consensus 243 i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~-~g~~~~iSWdeAl~~ia~~L~~~-~~~~g~ 320 (700)
|.+.+|.|+|+||.|+.|+++|++||.||.||+||++..|||+.||+|. +|+|+.+||++||..++..|++. .+++.+
T Consensus 262 ivvs~rt~ev~ri~pr~nedineewi~dksrfa~dglkrqrl~~pmvr~~~g~l~~~~we~al~~va~~~~~~~~~~~a~ 341 (708)
T KOG2282 262 IVVSTRTGEVLRILPRMNEDINEEWISDKSRFAYDGLKRQRLTEPMVRNEDGLLKAVSWEDALSRVAGMLQSFQGKQIAA 341 (708)
T ss_pred EEEECCCCCCEEECCCCCCCCCHHHHCCCCEEEECCHHHHHHCCCCEECCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 79934774012304333454006665465201323255544055303488886623018889999999987458642343
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 85043232355547889863687724202334446643401254677878774018579997385322573102577899
Q gi|254780859|r 321 VVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKR 400 (700)
Q Consensus 321 ~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka 400 (700)
++|...+.|.+.++|.+.+.+|+.|+.|..... ..-...+.+|.+|.++..++++|.++++|+||+.++|.+++|+|+.
T Consensus 342 iag~L~daea~valkdl~nrl~se~v~te~~f~-s~gtdlrsnyl~nt~iag~e~adavllVgtnpr~eap~~narirks 420 (708)
T KOG2282 342 IAGGLVDAEALVALKDLLNRVGSENVCTEEVFP-GGGTDLRSNYLLNTTIAGVEEADAVLLVGTNPRFEAPLVNARIRKS 420 (708)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCCHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCCCHHHHEE
T ss_conf 004412589999888988623851000002367-7873035455332101110134425652588643455544000000
Q ss_pred HHCCCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 97599706616850122334430489867888882687788999872353102354433210474698989899988741
Q gi|254780859|r 401 WRRGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG 480 (700)
Q Consensus 401 ~~~g~~~I~vi~~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G 480 (700)
+......+..+++.++++|.++|++.+...+.++.+|.++|++.++++++|+||.|.+.++..++...+..+..++.+++
T Consensus 421 ~~~~~~qv~~Ig~~aDl~y~~~~lga~~~i~~~Ia~g~h~fak~l~~ak~p~iIvga~~l~r~dgaAil~~v~qia~kL~ 500 (708)
T KOG2282 421 WLHNDLQVALIGPPVDLTYDYDHLGASAKILKDIASGSHPFSKVLKEAKKPAIIVGASALQRNDGAAILAAVSSIAQKLR 500 (708)
T ss_pred EEECCCEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 22041002100588441456225788678999987176088887504888659976435303314677899999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCH----HHCCCCCCEEEHHHHHHHHHHHHC
Q ss_conf 0585334754246753104521017765865236888860167599807642----201665434502211666688745
Q gi|254780859|r 481 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADE----LDFSDKQALTVYIGSHGDRGAQSA 556 (700)
Q Consensus 481 ~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~----l~~~~~~~fvV~~d~~~t~tA~~A 556 (700)
.. ..|.++|.|...+...|++|.|+.++-.. ......+++|++|+|. ++..++.+|+||++||.+..+..|
T Consensus 501 ~~-~~w~~~nvL~~~a~q~~aLd~gyk~ga~~----~~k~~~KVlylL~Ad~g~vt~~~lPkd~fvvyqghhgD~ga~~A 575 (708)
T KOG2282 501 MT-PDWKVLNVLQRIAAQVGALDVGYKAGVAA----IRKNPPKVLFLLGADAGKVTRQDLPKDCFVVYQGHHGDVGAPIA 575 (708)
T ss_pred CC-CCCEEEHHHHHHHHHHHHCCCCCHHHHHH----HHCCCCEEEEEECCCCCCCHHHCCCHHHEEEEEEEECCCCCCCC
T ss_conf 58-76132027777654442102562155677----75078638999416888613412971324886310036565622
Q ss_pred CEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 57704786202472088208867420443288555740799999999980779968798999999999781110554224
Q gi|254780859|r 557 DVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIR 636 (700)
Q Consensus 557 DVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~~~~~~~ 636 (700)
|||||++.|+||+|||+|+|||.|...+++.|||++|.||+|+++|++.-|..+||++.+++|+.|.+..|++-..++.+
T Consensus 576 dvvlpgaaytekeGtyvntegr~Qqt~pav~ppg~ar~dwkIirALSevsg~~Lpyssl~~vr~rle~vaPnLVr~de~E 655 (708)
T KOG2282 576 DVVLPGAAYTEKEGTYVNTEGRAQQTKPAVSPPGDAREDWKIIRALSEVSGKTLPYDTLDEVRNRLEEVAPNLVRYDDLE 655 (708)
T ss_pred EEECCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEECCCCC
T ss_conf 15321015761566045244764322578899865656169999999864898786317889876653187613315335
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHCCHHHHHHHHHHHH
Q ss_conf 221123211233444446563111--224631248988523899999999877
Q gi|254780859|r 637 PSATDGIYALAKKVGKMQKRNFVS--TVENFYLANSIARASATMAQCSLVAQS 687 (700)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~nfY~td~isr~S~tM~~c~~~~~~ 687 (700)
+..+.+.... ......+...+.+ .++||||||+|||+|+||+||+++-..
T Consensus 656 ~Aafgpsakp-~sket~~ttp~~p~~~ledfYMTNSISRASk~MAQCsaallK 707 (708)
T KOG2282 656 PAAFGPQAKP-LSKETGSTTPDDPLLELEDFYMTNSISRASKTMAQCSKAVLK 707 (708)
T ss_pred CCCCCCCCCH-HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4344521132-335314778776568887776441465664899999999744
No 8
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=100.00 E-value=0 Score=1236.93 Aligned_cols=677 Identities=50% Similarity=0.782 Sum_probs=610.7
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 04999999999968887588999986895461212799964560004799971798870200265664566376668537
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPE 83 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~ 83 (700)
|++|+|||++++|++|+||||||+++||+||+||||++|||+|+|||||||||| .+||++||+|||+|||+
T Consensus 1 m~tI~IDG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg-~~k~~~SC~tpv~dGM~-------- 71 (693)
T COG1034 1 MVTITIDGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEG-APKLVASCATPVTDGMV-------- 71 (693)
T ss_pred CEEEEECCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCCEE--------
T ss_conf 939998998986189728999999859987721035788744532577999668-88625301650678818--------
Q ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCH
Q ss_conf 98199899999999999998278998877888788837998998389867477756778788856021006432901002
Q gi|254780859|r 84 VFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTR 163 (700)
Q Consensus 84 v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~R 163 (700)
|+|+||+|+++|++||||||+|||||||||||||||+|||+++.||.+.+||.+.||++++++++|+|.+||||||||+|
T Consensus 72 I~T~s~~vk~~R~~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~dm~RCI~C~R 151 (693)
T COG1034 72 ISTNSEEVKKAREGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYDMNRCILCTR 151 (693)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEECHH
T ss_conf 85289999999999999998169987885689997536788998387754343345432333443132100240134166
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf 36454320687400333066641266205875556546622201212101223323334443023522012116886436
Q gi|254780859|r 164 CVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAI 243 (700)
Q Consensus 164 CVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i 243 (700)
|||||+||+|.++|++++||++++|+|+.+++++||+||||||+|||||||+|||+|.+|+|||++++|||.+|++||+|
T Consensus 152 CVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a~g~~i 231 (693)
T COG1034 152 CVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCAVGCNI 231 (693)
T ss_pred HHHHHHHHCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCHHCCCCEEECCCCCCCCE
T ss_conf 67766640686200101068872240224664221115662254653230467077653100103574110347443304
Q ss_pred EEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCC-CCEEEEE
Q ss_conf 675159999885247888777741135542210000000011011002222023241456688875201344-5314785
Q gi|254780859|r 244 RIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDYALKAIKSAVLSSD-VKLGAVV 322 (700)
Q Consensus 244 ~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~-~~~g~~~ 322 (700)
.+++|.++++|++++.|..+|+.|+||||||+||+++.+|+++|++|++|+|.++||.+|...++..+...+ ++.|+++
T Consensus 232 ~~d~r~~ev~ri~~r~n~~vNe~~~~d~~RF~~d~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~ 311 (693)
T COG1034 232 RVDERYGEVRRILPRYNEVVNEEWLCDKGRFAYDGLNLQRLDRPKIRVGGRLVEASWLEANEAIAQALALIKPEKVGAIA 311 (693)
T ss_pred EECCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 32133541232131204677788753665212000134011063311087222257199999998787653635531341
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 04323235554788986368772420233444664340125467787877401857999738532257310257789997
Q gi|254780859|r 323 GDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWR 402 (700)
Q Consensus 323 g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~ 402 (700)
|++.++|++|++|+|...+|++|++++.....+.....+..+.++.++.+|+++|.++++|.||++++|++++|+|++++
T Consensus 312 ~~~~~~E~~~alk~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ie~~d~~l~ig~~~~~~~~~l~~~ir~~~~ 391 (693)
T COG1034 312 SPRASVEELFALKELAGELGSSNIDHRQEDARLDPKVARAGYLYNPTIAEIESADAVLVIGANLRQEAPVLALRIRKAVK 391 (693)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHCCCCCCCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 21566887898888878745487434634431263442144214502767872743411077712233447789998864
Q ss_pred CCCCEEECCCCCHHHHHHH---HCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 5997066168501223344---3048986788888268778899987235310235443321047469898989998874
Q gi|254780859|r 403 RGNFPIAVIGDVGELRYKY---EHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDV 479 (700)
Q Consensus 403 ~g~~~I~vi~~~~~l~~~~---~~l~~~~e~l~~~~~g~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~ 479 (700)
.++..+..++...+..+.. ...++....+.+...+.....+.++.+++..++.|.++..+.++...+.....++..+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 471 (693)
T COG1034 392 GKGLPVAVIGGVAEWLYALLLSILLGAGIALLDELALGAEAATAAVKKAERELIEKGKGALAGAKKAAILALAEKLADEL 471 (693)
T ss_pred CCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEHHHCCHHHHHHHHHHCCCCCEEECCEEECCCCCCEEEEHHHHHHHHH
T ss_conf 36751565141267888777666406773363111033367788887402443223001213687631320567765566
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHH--HCCCEEEECCCC-HHHCCCC-CCEEEHHHHHHHHHHHH
Q ss_conf 1058533475424675310452101776586523688886--016759980764-2201665-43450221166668874
Q gi|254780859|r 480 GGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNIL--DKTDIVFLLGAD-ELDFSDK-QALTVYIGSHGDRGAQS 555 (700)
Q Consensus 480 G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~--~~~~~l~~~g~d-~l~~~~~-~~fvV~~d~~~t~tA~~ 555 (700)
|.....|++ ..++..++.+++++++.+|...+..+..++ ...+++++++.+ +++..+. ..|+|+++++.+.+++.
T Consensus 472 ~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 550 (693)
T COG1034 472 GAAEARWNG-VVLHEAASRVNALGLGFLPGLSGEDAALMLGPADANALLLLGIDEEADEADEHAKFVVYSDHHGDAGAEV 550 (693)
T ss_pred HHHHHCCCC-CHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHCEEEEECCCHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 666530565-2153898760634534355312122776525320100011055333354345787799724543455434
Q ss_pred CCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 55770478620247208820886742044328855574079999999998077996879899999999978111055422
Q gi|254780859|r 556 ADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEI 635 (700)
Q Consensus 556 ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~~~~~~ 635 (700)
||||||+++|+|++|||+|+|||+|.+++|+.|++++++||+|++.|+..||++++|++.+++|+++...+|.|..++..
T Consensus 551 a~vilp~a~~~e~~Gt~vN~eGR~q~~~~a~~~~~~~~~~w~~l~~L~~~lg~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 630 (693)
T COG1034 551 ADVVLPAASFTEKSGTYVNLEGRVQRFNQALRPGGDEREDWRVLHALASELGLKLDFDQLDAVRAALAAAHPGFALIDSA 630 (693)
T ss_pred HHEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 31653446555556618720264112322346764406789999986887387777731799999998746305444333
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 4221123211233444--4465631112246312489885238999999998776666
Q gi|254780859|r 636 RPSATDGIYALAKKVG--KMQKRNFVSTVENFYLANSIARASATMAQCSLVAQSCEKR 691 (700)
Q Consensus 636 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~nfY~td~isr~S~tM~~c~~~~~~~~~~ 691 (700)
.+....+......... .+....+..... ||++++++|+|++|++|..+..+...+
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~g~~~~ 687 (693)
T COG1034 631 AKGEREPPAGEGILANRANISVAEPLQPQD-FYLAMPGARNSPQAAKKLQLEVGQAVR 687 (693)
T ss_pred HCCCCCCCCCCCHHCCCCCCCCCCCCCCCC-HHHHCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 205668853210012433234335578510-133062000599999766565146054
No 9
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=0 Score=1088.90 Aligned_cols=577 Identities=21% Similarity=0.289 Sum_probs=442.2
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 04999999999968887588999986895461212799964560004799971798870200265664566376668537
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPE 83 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~ 83 (700)
||+|+|||++|+|++|+||||||+++||+||+|||||+|+|+|+|||||||||| |+++||+|||+|||+
T Consensus 1 mv~i~Idg~~~~~~~g~til~aa~~~gi~IP~lCy~~~l~p~g~Cr~C~VEv~G---~~~~sC~t~v~~GM~-------- 69 (819)
T PRK08493 1 MITININGKEIECQEGEYILNAARRNGIFIPAICYLSGCSPTLACRLCMVEADG---KRVYSCNTKAKEGMN-------- 69 (819)
T ss_pred CCEEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC---CCCCCCCCCCCCCCE--------
T ss_conf 918999999999699997999999739985614489992968877663898789---482674888899999--------
Q ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCH
Q ss_conf 98199899999999999998278998877888788837998998389867477756778788856021006432901002
Q gi|254780859|r 84 VFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTR 163 (700)
Q Consensus 84 v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~R 163 (700)
|+|+||+|+++|+.+|||||+|||||||+|||+|||+|||++++||++++||...++..++++ +|||.+|+||||+|+|
T Consensus 70 V~T~s~~v~~~r~~v~e~ll~nHpl~C~vCd~~g~C~Lq~~~~~~gv~~~~~~~~~~~~~~~~-~~~~~~d~~~CI~C~r 148 (819)
T PRK08493 70 ILTNTPNLNDERNAIMQTYDVNHPLECGVCDKSGECELQNFTHEMRVNHQKYAIKDTHKPHKS-WGKINYDPSLCIVCER 148 (819)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCH
T ss_conf 997999999999999999985799878878987885899999985999877876677775678-8846644131740768
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCEEEECCC-----------------------CCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 364543206874003330666412662058-----------------------755565466222012121012233233
Q gi|254780859|r 164 CVRFITEVAGVSELGLVGRGENAEITTYLE-----------------------QSLTSEMQGNIIDLCPVGALTSKPFAF 220 (700)
Q Consensus 164 CVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~-----------------------~~~~~e~~Gncvd~CPvGALt~k~~~~ 220 (700)
|||+|+||+|..+|++.+||+++.|.++.+ ..++|++||||||+||||||++|+|+|
T Consensus 149 CVr~C~ev~g~~~l~~~~rG~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~vCP~GAL~~k~~~~ 228 (819)
T PRK08493 149 CVTVCKDKIGESALKTVPRGLDAVDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSDFQY 228 (819)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 99998876186336651367644334223434432100124344321135678876770114257539753253665423
Q ss_pred CCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECC---CCCCCCCCEECCCCCCCCCHHHH-CCCCHHHEECCCCEE
Q ss_conf 34443023522012116886436675159999885247---88877774113554221000000-001101100222202
Q gi|254780859|r 221 TGRSWELTKTDSIDVMDALGSAIRIDARGCEVMRILPR---INESINEEWISDKTRFIWDGLKV-QRLDCPYARINGRLK 296 (700)
Q Consensus 221 ~~Rpwel~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~---~~~~vN~g~lC~KGRf~~d~~~~-dRL~~PliR~~g~~~ 296 (700)
++|+||+++++|||+|||+||+++++||+++|+++.|+ .++++|.||||+|||||||++++ +|+++|
T Consensus 229 ~~r~w~~~k~~t~C~~CgvGC~~~~~vk~~~i~~~~~~i~~v~n~~N~g~lCvkGRfg~df~ns~~R~e~~--------- 299 (819)
T PRK08493 229 TSNAWELKKIPSTCPHCSAGCLIYYDVKHSSILNQESKIYRVSNDFYFNPLCGAGRFAFDFSNEAPKDEKA--------- 299 (819)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---------
T ss_conf 46664012004418988899602899854600134565236778755365425660676666776455355---------
Q ss_pred ECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH-H-HCCCCCCCCCHHHHH
Q ss_conf 32414566888752013445314785043232355547889863687724202334446643-4-012546778787740
Q gi|254780859|r 297 PVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPS-Y-GRASYIFNPTIQGIE 374 (700)
Q Consensus 297 ~iSWdeAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~-~-~~~~~~~~~~i~die 374 (700)
|++|++.+.+. +.++ .|+.+||||+|++|+|++.+|++++|..++.+..... + ..++...+++++||+
T Consensus 300 ---l~~a~~~~k~~-----~ai~--fss~~TNEEayllQklr~~~G~n~~n~~a~~~q~~~~~~~t~g~g~~t~si~di~ 369 (819)
T PRK08493 300 ---FKEAVEAFKKA-----EAIK--FNSFITNEEALILERLKKKFGLKLYNEEALKFQQFLKVFSEVSGKSYSANLEDIK 369 (819)
T ss_pred ---HHHHHHHHCCC-----CHHH--CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf ---99998753335-----4011--0456758999999999998588887788888899999998752777778888886
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEECCCCCHHHH----HHHHC--CCCCHHHH------H---------
Q ss_conf 1857999738532257310257789997-5997066168501223----34430--48986788------8---------
Q gi|254780859|r 375 EADAMLIIGSNPRLEAAVLNARIRKRWR-RGNFPIAVIGDVGELR----YKYEH--LGNGSEAL------A--------- 432 (700)
Q Consensus 375 ~ad~illiG~Np~~~~Pvl~~rirka~~-~g~~~I~vi~~~~~l~----~~~~~--l~~~~e~l------~--------- 432 (700)
+||+||+||+||+++|||+++|||+|++ +|+++|++.+....+. ....+ ..++++.. .
T Consensus 370 ~ad~IiviGsn~te~hPV~~~~ik~A~k~~GakLIv~dP~~~~~~~~~a~~~~~~~~~pGt~~~~l~~i~~~i~~~~~~~ 449 (819)
T PRK08493 370 TSDFVVVAGSSLKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFICITHEVGAEEIILGLLLKKFLEEEALL 449 (819)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 29879997568543473899999999984697279976765278887654124504799949999999999875132235
Q ss_pred -HHHCCCCHH------------------------------HHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf -882687788------------------------------9998723531023544332104746989898999887410
Q gi|254780859|r 433 -DLVSGQHPF------------------------------FKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGG 481 (700)
Q Consensus 433 -~~~~g~~~~------------------------------~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ 481 (700)
++.+.+.++ ++.+..+....+.++++...+..+.........+..+.+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 529 (819)
T PRK08493 450 KSLEEFFDSLVDEAALKALEEERKKVLEQAEEGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETLEKLLKLLAKK 529 (819)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 78998788888777665567778877777776777899999999998887778889999987286656677777776511
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCC-CC------------CCHHH---HHHCCCEEEECCCCHHHCCCCCCEEEHH
Q ss_conf 58533475424675310452101776586-52------------36888---8601675998076422016654345022
Q gi|254780859|r 482 ISDSWNGFAVLHTVASRVGALDLGFVPAD-DT------------INAMN---ILDKTDIVFLLGADELDFSDKQALTVYI 545 (700)
Q Consensus 482 ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~-~~------------~~~~~---~~~~~~~l~~~g~d~l~~~~~~~fvV~~ 545 (700)
.+..+...++|++++|.+|+.+|+.++.. .. ..... +.++++++|++|.| .+
T Consensus 530 ~~~~l~~G~dl~~~~n~~~~a~~~~l~~~~~~~~~~~~p~~~~~lgv~~i~~l~~~~~~~yi~G~n------------~~ 597 (819)
T PRK08493 530 NNFTLVVGEDLYAHKNAKNLAKLLGLIAKKSAFKVLLIPPSTNTLGVALICDLSEEIEEGKTIGYN------------EK 597 (819)
T ss_pred CCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHCCCHHHHCCCCCCC------------CC
T ss_conf 586424457755687605378765053346761366337877753124443112012121011543------------00
Q ss_pred HHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 11666688745577047862024720882088674204432885557407999999999807799687989999999997
Q gi|254780859|r 546 GSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSH 625 (700)
Q Consensus 546 d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~ 625 (700)
+.|+++++++||||||+.+ ||+|||||+|||||+.+||++||| +++.+||++||+++.|. .++.+++. .
T Consensus 598 ~dFl~~t~~~ADVvLPA~~--EkEGTFTNtErRVQ~~~~Al~~~G------~~l~DiA~~lG~~~~y~--~~~~~~~~-~ 666 (819)
T PRK08493 598 GDFTISSLEDADLILPALN--QQEGTFTNIDKRVVPTNAALPFEG------YDLNDIANALGFDEEYT--IDYTKKLP-T 666 (819)
T ss_pred CCEEECCCCCCCEEECCCC--CCCCCEECCCCEEECCCCCCCCCC------HHHHHHHHHCCCCCCCC--HHHHHHCC-C
T ss_conf 0233022045887605871--246885887574552301569983------52999999718986433--35677553-3
Q ss_pred CCCCCCCCC
Q ss_conf 811105542
Q gi|254780859|r 626 HPHFMQLDE 634 (700)
Q Consensus 626 ~P~~~~~~~ 634 (700)
.|.|.++++
T Consensus 667 ~~~~~gi~~ 675 (819)
T PRK08493 667 EKGFKAIEF 675 (819)
T ss_pred CCCCCCCCH
T ss_conf 367467766
No 10
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=100.00 E-value=0 Score=832.29 Aligned_cols=467 Identities=25% Similarity=0.342 Sum_probs=397.4
Q ss_pred ECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-----HCCCCHHHEEC--CCCEEECCHHHHH
Q ss_conf 0121168864366751599998852478887777411355422100000-----00011011002--2220232414566
Q gi|254780859|r 232 SIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-----VQRLDCPYARI--NGRLKPVSWDYAL 304 (700)
Q Consensus 232 SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-----~dRL~~PliR~--~g~~~~iSWdeAl 304 (700)
|||+|||+||++.+.|+|++|+||+|..++++|+|.+|.||+|+||+++ .|||++||||+ +++|+++|||||+
T Consensus 1 TvCpYCGvGC~~~~~v~d~~i~rv~P~~~~~~N~G~~C~KG~fa~e~i~~tqil~dRl~~PLiRe~~~d~f~~~sWdEAi 80 (694)
T TIGR01591 1 TVCPYCGVGCSLNLVVKDEKIVRVEPYKEGKANRGKLCVKGKFAYEFIYSTQILKDRLTTPLIREKIGDKFREVSWDEAI 80 (694)
T ss_pred CCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCEEEECCCCCEEECHHHHH
T ss_conf 94033155664478982878998872588878866024774302112230100003324873254038941051478999
Q ss_pred HHHHHHHCCCCCCEE-----EEECCCCC-CHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHC----CCCCCCCCHHHH
Q ss_conf 888752013445314-----78504323-235554788986-3687724202334446643401----254677878774
Q gi|254780859|r 305 KAIKSAVLSSDVKLG-----AVVGDLSS-VEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGR----ASYIFNPTIQGI 373 (700)
Q Consensus 305 ~~ia~~L~~~~~~~g-----~~~g~~~t-~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~----~~~~~~~~i~di 373 (700)
+.||+||++|+++|| +++|++.| |||+|++|||++ .|||||||+++|.|+-+...|+ +.+..+++++||
T Consensus 81 ~~iA~kL~~I~e~YGp~~Igf~~ssr~tGNEe~Y~~QKlAR~~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~s~~~~~i 160 (694)
T TIGR01591 81 SYIAKKLKEIKEKYGPDSIGFIASSRITGNEENYLLQKLARAVLGTNNVDNCARVCHEPSVAGLKQTVGIGAMSNTISDI 160 (694)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 99999999886214832144420378875236789999999985037745545403787899999762455335520344
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHH-HCCCCEEECCCCCHHHHH----H----------------------------
Q ss_conf 0185799973853225731025778999-759970661685012233----4----------------------------
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNARIRKRW-RRGNFPIAVIGDVGELRY----K---------------------------- 420 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~rirka~-~~g~~~I~vi~~~~~l~~----~---------------------------- 420 (700)
|++|+|++||.||.++|||++.+|.+|. ++|++.||++++....+- .
T Consensus 161 e~a~~ivi~G~N~~esHPvv~~~l~~AKk~nGaKiiV~DpR~t~taksahi~AD~~i~~k~GTdial~na~a~viI~egL 240 (694)
T TIGR01591 161 ENADLIVIIGANPAESHPVVASKLMRAKKRNGAKIIVIDPRKTETAKSAHIIADLFIPLKPGTDIALLNAVANVIIEEGL 240 (694)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEECCCC
T ss_conf 32775899756765554368999999985089789997588860232211101106517997089999732002422786
Q ss_pred --HH----CC-CCCHHHHHHHHCC-CCH----------------HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf --43----04-8986788888268-778----------------899987235310235443321047469898989998
Q gi|254780859|r 421 --YE----HL-GNGSEALADLVSG-QHP----------------FFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLV 476 (700)
Q Consensus 421 --~~----~l-~~~~e~l~~~~~g-~~~----------------~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~ 476 (700)
.+ .. +.+++.+++++++ +++ +|+.+++|.+++|+||+|++||.+|++++.++++||
T Consensus 241 ~Dk~Fi~~R~~W~~F~E~r~~V~~~yTpE~vE~ITgV~~d~Ir~~A~~yA~a~~~Ai~wGlGvTq~~~Gv~tV~~~~nLA 320 (694)
T TIGR01591 241 YDKEFIEKRTDWEGFEEFREIVKGKYTPEYVEKITGVPADLIREIARMYAKAGSAAILWGLGVTQHSQGVETVMALANLA 320 (694)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHH
T ss_conf 16688975148785378887750478753222125788889999999983589679995550200013556999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCC----------------------------CCCCCHHHHHH-----CCC
Q ss_conf 874105853347542467531045210177658----------------------------65236888860-----167
Q gi|254780859|r 477 IDVGGISDSWNGFAVLHTVASRVGALDLGFVPA----------------------------DDTINAMNILD-----KTD 523 (700)
Q Consensus 477 ~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~----------------------------~~~~~~~~~~~-----~~~ 523 (700)
++|||+|++|+|++|||||+|+||++|||.+|. ++|+...++++ +++
T Consensus 321 llTGN~G~~G~Gv~P~RGQNNVQGacDmG~lp~~lPGY~~~~d~~~~~~~~~~WG~~~L~~~~GL~Ipe~~da~~~G~~k 400 (694)
T TIGR01591 321 LLTGNIGKPGGGVNPLRGQNNVQGACDMGALPEFLPGYRKLSDEEVREKFEKLWGVVKLPAEPGLRIPEMIDAALDGDLK 400 (694)
T ss_pred HHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 99603674776220247755532210147888887786744836899999862783118668897322378998549716
Q ss_pred EEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCC
Q ss_conf 5998076422----------016654345022116666887455770478620247208820886742044328855574
Q gi|254780859|r 524 IVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAK 593 (700)
Q Consensus 524 ~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak 593 (700)
+||++|+||+ .++.+++|+||||.|||+||+|||||||+++|+||||||||+|||+|+++||++|+||+|
T Consensus 401 alYI~GEdp~~sDp~~~~V~~aL~~lellVVqD~F~T~TA~yAdvvLPaa~w~EkeGtftN~eRriq~~~Ka~eP~gesk 480 (694)
T TIGR01591 401 ALYIVGEDPVISDPDTKKVRKALEKLELLVVQDIFMTETAKYADVVLPAAAWAEKEGTFTNAERRIQRFFKAVEPKGESK 480 (694)
T ss_pred EEEEECCCCEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEEEEEECCCCCCC
T ss_conf 99983585022379858999897538637970756133773526003442211347627705761777887535674654
Q ss_pred HHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCCCCCCCC-CCCCCCCCCCC----
Q ss_conf 0799999999980779---96879899999999978111055422-----42211232112334-44446563111----
Q gi|254780859|r 594 EDWEIICALADELKCS---LPFSSLSQLRSHLYSHHPHFMQLDEI-----RPSATDGIYALAKK-VGKMQKRNFVS---- 660 (700)
Q Consensus 594 ~dw~Il~~La~~LG~~---~~~~~~~ei~~ei~~~~P~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~---- 660 (700)
+||||+++||++||++ |.|+|+.+|++||.+.+|.|++++.- ....|.....-..+ ...++.+.|..
T Consensus 481 ~DWeI~~~lA~~lG~~gemf~Y~~~~~i~~Ei~~~~p~f~~~~~~~l~~~~~~~wp~~~~~~~~GT~~Ly~d~F~tP~Gk 560 (694)
T TIGR01591 481 PDWEIIQELANALGLDGEMFNYNHPKEIFEEIRELTPLFAGLNYERLEELGSLQWPCNDEDASPGTPLLYKDKFATPDGK 560 (694)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 23899999999728788756778888999999985776668646550575544478888887688840110355589974
Q ss_pred --------------------------CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --------------------------2246312489885238999999998776666888776409
Q gi|254780859|r 661 --------------------------TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG 700 (700)
Q Consensus 661 --------------------------~~~nfY~td~isr~S~tM~~c~~~~~~~~~~~~~~a~~~~ 700 (700)
.+...|.++...||+.++.+ .+--..-.+..+-|++||
T Consensus 561 a~F~~~e~~~p~e~~~~~yPliL~TgR~l~hY~~g~mT~R~~~l~~--~~~e~~v~I~~EDA~~lg 624 (694)
T TIGR01591 561 AKFIPLEWVAPIEEPDDEYPLILTTGRVLTHYNVGEMTRRVAGLRR--KVPEPFVEINTEDAEKLG 624 (694)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECHHHHCCCHHHHH--HCCCCEEEECHHHHHHCC
T ss_conf 6887632003457888861558980159887405454305547775--278982763158897558
No 11
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=100.00 E-value=0 Score=680.00 Aligned_cols=372 Identities=57% Similarity=0.966 Sum_probs=350.3
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEECCCCEEECCHHHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000000110110022220232414566888752
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDYALKAIKSA 310 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~~g~~~~iSWdeAl~~ia~~ 310 (700)
+|||+||++||+|++++|+|+|+||+|+.|+++|+|||||||||+|+++++|||++||+|++|+|+|+||||||+.++++
T Consensus 1 ~si~~~dsvGC~i~v~~r~g~v~Rv~p~~n~~vN~~~lCdkGRf~~~~~~~~Rl~~PliR~~g~~~~vsWdeAl~~ia~~ 80 (375)
T cd02773 1 ESIDVLDAVGSNIRVDTRGGEVMRILPRLNEDINEEWISDKTRFAYDGLKRQRLDKPYIRKNGKLKPATWEEALAAIAKA 80 (375)
T ss_pred CCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEECCCCEEEECHHHHHHHHHHH
T ss_conf 97386667888878966799999975888888887722686443564633000698818039956570899999999999
Q ss_pred HCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCC
Q ss_conf 01344-53147850432323555478898636877242023344466434012546778787740185799973853225
Q gi|254780859|r 311 VLSSD-VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLE 389 (700)
Q Consensus 311 L~~~~-~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~ 389 (700)
|++++ +++++++|+++|+|++|++|+|++.+||+|+|++.+.+...... +..+.++.+++||+++|+||+||+||+++
T Consensus 81 l~~~~~~~i~~~~s~~~t~Ee~y~~~kl~~~lgt~nid~~~~~~~~~~~~-~~~~~~~~~~~die~ad~illiG~n~~~~ 159 (375)
T cd02773 81 LKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPADL-RSNYLFNTTIAGIEEADAVLLVGTNPRFE 159 (375)
T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH-HCCCCCCCCHHHHHHCCEEEEECCCHHHH
T ss_conf 97329651789946876889999999999974998630015322466133-20423489877786488899966886785
Q ss_pred CCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 73102577899975997066168501223344304898678888826877889998723531023544332104746989
Q gi|254780859|r 390 AAVLNARIRKRWRRGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVM 469 (700)
Q Consensus 390 ~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~ 469 (700)
||++++||||++++++.+|+++++..+++|...+++.+...+.++.++.+++++.+.++++|+|++|.++.++.++...+
T Consensus 160 ~Pil~~rirka~~~~~~~v~vi~~~~~~~~~~~~lg~~~~~l~~~~~~~~~~a~~l~~a~~~~ii~g~~~~~~~~~~~~~ 239 (375)
T cd02773 160 APVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHLGTDAKTLQDIASGKHPFSKALKDAKKPMIIVGSGALARKDGAAIL 239 (375)
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHH
T ss_conf 72377776665315750588538874433025444888899999983354889999855421776525665255399999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHC--CCCCCEEEHHHH
Q ss_conf 898999887410585334754246753104521017765865236888860167599807642201--665434502211
Q gi|254780859|r 470 ANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDF--SDKQALTVYIGS 547 (700)
Q Consensus 470 ~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~~--~~~~~fvV~~d~ 547 (700)
.++.+++..+|++++.|+|+++|+..+|.+|++|||..|.... ....++++++|++|.|++.. .++..|+|+||+
T Consensus 240 ~~~~~la~~~g~~~~~~~g~~~l~~~~n~~g~~d~g~~p~~~~---~~~~~~~k~l~v~g~d~~~~~~~~~~~fvVv~d~ 316 (375)
T cd02773 240 AAVAKLAKKNGVVREGWNGFNVLHRAASRVGALDLGFVPGAGA---IRKSGPPKVLYLLGADEIDITPIPKDAFVVYQGH 316 (375)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCHH---HHHCCCCCEEEECCCCCCCCCCCCCCCEEEEECC
T ss_conf 9999999995898888804400558888887614488999124---6636898889982888456675678987999606
Q ss_pred HHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 66668874557704786202472088208867420443288555740799999999980
Q gi|254780859|r 548 HGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 548 ~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
|+|+|+++||||||+++|+||+|||||+|||+|+++|+++|||+|||||+||++||++|
T Consensus 317 ~~t~ta~~ADVvLPaa~~~Ek~GT~~N~EgRvQ~~~kav~ppG~ar~dw~Il~~la~~L 375 (375)
T cd02773 317 HGDRGAQIADVILPGAAYTEKSGTYVNTEGRVQQTRKAVSPPGDAREDWKILRALSEVL 375 (375)
T ss_pred CCCCCHHHCCEEEECCCCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 79958612989972898654770589778970630556489866878999999998449
No 12
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=639.51 Aligned_cols=398 Identities=26% Similarity=0.328 Sum_probs=343.0
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-00011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
+|+|++|++||+|.++|+||+|+||+|++++|+|+||||+||||++++++ +|||++||+|++|+|++|||||||++||+
T Consensus 1 kT~C~~C~~gC~i~v~v~dg~v~rv~g~~~~p~n~g~lC~kG~~~~~~~~~pdRl~~Pl~R~~g~~~~isWdeAl~~ia~ 80 (512)
T cd02753 1 KTVCPYCGVGCGLELWVKDNKIVGVEPVKGHPVNRGKLCVKGRFGFDFVNSKDRLTKPLIRKNGKFVEASWDEALSLVAS 80 (512)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCEEEEECHHHHHHHHHH
T ss_conf 94795973689928999999999987789898787553787986888747984316981941992789139999999999
Q ss_pred HHCCCCCCEE-----EEECCCCCCHHHHHHHHHHHH-CCCCCEECCCCCCCCCHHHHC----CCCCCCCCHHHHHCCCEE
Q ss_conf 2013445314-----785043232355547889863-687724202334446643401----254677878774018579
Q gi|254780859|r 310 AVLSSDVKLG-----AVVGDLSSVEEIYALKLLMQS-LGCENFDCRQNGEYLDPSYGR----ASYIFNPTIQGIEEADAM 379 (700)
Q Consensus 310 ~L~~~~~~~g-----~~~g~~~t~Ee~y~~k~l~~~-lGt~nid~~~~~~~~~~~~~~----~~~~~~~~i~die~ad~i 379 (700)
+|+++++++| .+.|++.++|+.|++++|++. +|++|+|+.++.|+.....+. +......++.|++++|+|
T Consensus 81 kl~~i~~~~G~~~i~~~~s~~~~~e~~~~~~~~~~~~~gs~~~d~~~~~c~~~~~~~~~~~~G~~~~~~~~~D~~~ad~i 160 (512)
T cd02753 81 RLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGSGAMTNSIADIEEADVI 160 (512)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCEE
T ss_conf 99999987199849999069875077999999998548985015877655417888999970889888898789739889
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHH---HHCCCC------------------------------
Q ss_conf 99738532257310257789997599706616850122334---430489------------------------------
Q gi|254780859|r 380 LIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYK---YEHLGN------------------------------ 426 (700)
Q Consensus 380 lliG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~---~~~l~~------------------------------ 426 (700)
|+||+||.++||+++.+|++|.++|++.|++++....++.. +..+.+
T Consensus 161 l~~G~N~~~~~p~~~~~i~~a~~~Gak~vviDPr~t~ta~~Ad~~l~irPGtD~al~~a~~~~ii~~~~~d~~fi~~~t~ 240 (512)
T cd02753 161 LVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQLRPGTDVALLNAMAHVIIEEGLYDEEFIEERTE 240 (512)
T ss_pred EEECCCCHHHCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCEEEECCCCCCHHHHHHHCC
T ss_conf 99898804667899999999987898799946866707887552425688942877647635850066645145776057
Q ss_pred CHHHHHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8678888826877----------------889998723531023544332104746989898999887410585334754
Q gi|254780859|r 427 GSEALADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFA 490 (700)
Q Consensus 427 ~~e~l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~ 490 (700)
+++.+.+.+..++ ++++.++++++++|++|.|+.+|.+|.++.+++..|++++|+++++|+|++
T Consensus 241 gf~~~~~~~~~~tpe~~a~itgv~~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~g~~G~g~~ 320 (512)
T cd02753 241 GFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAILWGMGVTQHSHGTDNVMALSNLALLTGNIGRPGTGVN 320 (512)
T ss_pred CHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 79999998650899999988598899999999999756987999660440030069999999999998478899886606
Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHHCCEEE
Q ss_conf 24675310452101776586523688886016759980764220----------16654345022116666887455770
Q gi|254780859|r 491 VLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQSADVIL 560 (700)
Q Consensus 491 ~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~ADVVL 560 (700)
++++++|.+|+.++|.+|..- -+.++++|++|.||+. ++++.+|+|++|+|+|+||++|||||
T Consensus 321 p~~g~~n~~g~~~~g~~~~~~-------pg~ikal~v~g~Np~~~~pd~~~~~~al~k~df~Vv~d~~~t~Ta~~ADiVL 393 (512)
T cd02753 321 PLRGQNNVQGACDMGALPNVL-------PGYVKALYIMGENPALSDPNTNHVRKALESLEFLVVQDIFLTETAELADVVL 393 (512)
T ss_pred CCCCCCCCCHHHHHCCCCCCC-------CCCCEEEEEECCCHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHCEEC
T ss_conf 256875310166623595438-------8741699993778543086878999886479959996388895366616014
Q ss_pred CCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 478620247208820886742044328855574079999999998077996879899999999978111055422
Q gi|254780859|r 561 PGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEI 635 (700)
Q Consensus 561 P~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~~~~~~ 635 (700)
|+++|+|++|||+|.|||+|+.+|+++|+||+|+||+|+++||++||++..|.+.+|+++||.+..|.|.+++.-
T Consensus 394 Paat~~E~~g~~~n~e~~v~~~~~~i~P~geak~d~~I~~~La~~lG~~~~~~~~~~~~~~~~~~~~~~~g~t~e 468 (512)
T cd02753 394 PAASFAEKDGTFTNTERRVQRVRKAVEPPGEARPDWEIIQELANRLGYPGFYSHPEEIFDEIARLTPQYAGISYE 468 (512)
T ss_pred CCCCCCCCCCEEECCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 456434457517826883898566558930036399999999998389987899999999999858475899899
No 13
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=100.00 E-value=0 Score=638.05 Aligned_cols=399 Identities=27% Similarity=0.361 Sum_probs=339.6
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-00011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
||||++|++||+|.++++||+|+||+|++++|+|+||||+||||++++++ +|||++||+|++|+|++|||||||++||+
T Consensus 1 PTvC~~C~~gC~i~v~v~dg~v~rv~g~~~~p~n~G~lC~KG~~~~~~~~~pdRl~~Pl~R~~g~f~~iSWdEAl~~iA~ 80 (472)
T cd02771 1 PSICHHCSVGCNISLGERYGELRRVENRYNGAVNHYFLCDRGRFGYGYVNSRDRLTQPLIRRGGTLVPVSWNEALDVAAA 80 (472)
T ss_pred CEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEECCCCCEEECCHHHHHHHHHH
T ss_conf 90197986688959999899999987899988788377673665676518964135995904995607489999999999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCC
Q ss_conf 201344531478504323235554788986-3687724202334446643401254677878774018579997385322
Q gi|254780859|r 310 AVLSSDVKLGAVVGDLSSVEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRL 388 (700)
Q Consensus 310 ~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~ 388 (700)
+|+++++++|++.|++.++|+.|++++|++ .+||+|+|+..+.+......+ .+..+.++.|++++|+||+||+||++
T Consensus 81 klk~~~~~~g~~~s~~~~~e~~y~~~kl~~~~~gt~~~d~~~~~~~~~~~~~--~~~~~~~~~Di~~ad~il~~G~N~~~ 158 (472)
T cd02771 81 RLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHRARRLIAEILRN--GPIYIPSLRDIESADAVLVLGEDLTQ 158 (472)
T ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--CCCCCCCHHHHHHCCEEEEECCCHHH
T ss_conf 9997547699996474207999999999986169974135625568999864--78879998999869999997488577
Q ss_pred CCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHH---HCCCCCHHH-------------------------------HHHH
Q ss_conf 573102577899975997066168501223344---304898678-------------------------------8888
Q gi|254780859|r 389 EAAVLNARIRKRWRRGNFPIAVIGDVGELRYKY---EHLGNGSEA-------------------------------LADL 434 (700)
Q Consensus 389 ~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~---~~l~~~~e~-------------------------------l~~~ 434 (700)
+||+++.++|++.+++++.|+++++....+... ..+.++++. +.+.
T Consensus 159 ~~p~~~~~i~~a~~~~~~~ivvdp~~~~~a~~ad~~~~~~pgtdlal~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (472)
T cd02771 159 TAPRIALALRQAARRKAVELAALSGIPKWQDAAVRNIAQGAKSPLFIVNALATRLDDIAAESIRASPGGQARLGAALARA 238 (472)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 54899999999998599499987999767898887447799988999999999998613034543337376799999875
Q ss_pred H--------CC-----CCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2--------68-----7788999872353102354433210474698989899988741058533475424675310452
Q gi|254780859|r 435 V--------SG-----QHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGA 501 (700)
Q Consensus 435 ~--------~g-----~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga 501 (700)
. .+ ...+++.+..++++++++|.+. .+.....++.+|+.++|++++.+ |..++....|.+|.
T Consensus 239 ~~~~~~~~~~~~~~~~i~~~a~~~~~a~~~~i~~g~~~----~~~~~~~a~~~l~~~~g~~g~~g-G~~~~~~~~~~~g~ 313 (472)
T cd02771 239 VDASAAGVSGLAPKEKAARIAARLTGAKKPLIVSGTLS----GSLELIKAAANLAKALKRRGENA-GLTLAVEEGNSPGL 313 (472)
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCH----HHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCC
T ss_conf 87766766068879999999999963999199979425----56999999999999866768887-86777675567877
Q ss_pred HHCCCCCCCCCCCHHHHHH-----CCCEEEECCCCHHH---------CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCC
Q ss_conf 1017765865236888860-----16759980764220---------166543450221166668874557704786202
Q gi|254780859|r 502 LDLGFVPADDTINAMNILD-----KTDIVFLLGADELD---------FSDKQALTVYIGSHGDRGAQSADVILPGAAYTE 567 (700)
Q Consensus 502 ~d~g~~P~~~~~~~~~~~~-----~~~~l~~~g~d~l~---------~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~E 567 (700)
.++|..|...+.+...+++ +++++|++|.||+. .+++.+|+|++|+|+|+||++||||||+++|+|
T Consensus 314 ~~~g~~~~~~~~~~~~~~~~~~~g~ikal~v~g~nP~~~~p~~~~~~al~kldf~Vv~D~f~teTA~~ADvVLPaat~~E 393 (472)
T cd02771 314 LLLGGHVTEPGLDLDGALAALEDGSADALIVLGNDLYRSAPERRVEAALDAAEFVVVLDHFLTETAERADVVLPAASFAE 393 (472)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHCCCHHHHHHHHHCCCEEEEECCCCCCCHHHCCEEECCCCCCC
T ss_conf 56677888677899999988763896689983889664198288999876699399989999918565799965898776
Q ss_pred CCCEEEEECCEEEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4720882088674204432-885557407999999999807799687989999999997811105542242
Q gi|254780859|r 568 KSGLWVNTEGRVQMGMRAI-FPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRP 637 (700)
Q Consensus 568 k~Gtf~N~EgRvQ~~~~av-~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~~~~~~~~ 637 (700)
|+|||||+|||+|++++++ +|+|||||||||+++||++||.+++|+ +.+|++||++.+|.|+++.....
T Consensus 394 ~~Gt~~n~e~r~q~~~~av~~P~Gear~dw~I~~~La~rlG~~~~~~-~~~~~~ei~~~~p~~~~~~~~~~ 463 (472)
T cd02771 394 KSGTFVNYEGRAQRFFKAYDDPAGDARSDWRWLHALAAKLGGKLVPS-DAAILDEIIALVPGKAPVGGHLY 463 (472)
T ss_pred CCCEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHCCCCCCCCHHHC
T ss_conf 78569847886155232124999756279999999999848999999-89999999986835258681111
No 14
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=100.00 E-value=0 Score=628.20 Aligned_cols=363 Identities=31% Similarity=0.522 Sum_probs=325.7
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEE-CCCCEEECCHHHHHHHHHH
Q ss_conf 201211688643667515999988524788877774113554221000000001101100-2222023241456688875
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYAR-INGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR-~~g~~~~iSWdeAl~~ia~ 309 (700)
+||+.+|++||+|+|++|+++|+||+|+.|+.||++||||||||+||+++.|||++||+| .+|+|+++||+|||+.+++
T Consensus 1 esidv~D~~GsnI~v~~k~~~V~RvlPr~Ne~INe~WisDK~RF~ydgl~~~Rl~~Plik~~ng~~~~~sW~eAl~~i~~ 80 (366)
T cd02774 1 ESIDVLDSLGSNIRVDIKGNEILRILPKINDELNEEWISDKIRFSYDSLKYQRIKTPLLKLSNNSFLEIGWKTAFKFLNK 80 (366)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCHHHCCCCCCHHHCCCCHHHCCCCEEECCCCCEEECCHHHHHHHHHH
T ss_conf 96155336888769981089899946867764333342477510003515243788749768995788169999999999
Q ss_pred HHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCC-HHHHCCCCCCCCCHHHHHCCCEEEEECCCCC
Q ss_conf 201344-53147850432323555478898636877242023344466-4340125467787877401857999738532
Q gi|254780859|r 310 AVLSSD-VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLD-PSYGRASYIFNPTIQGIEEADAMLIIGSNPR 387 (700)
Q Consensus 310 ~L~~~~-~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~-~~~~~~~~~~~~~i~die~ad~illiG~Np~ 387 (700)
+|+..+ +++++++|+++|+|++|++|+|++.+|+.|+|++.+..... ....+..+++++++.||+++|+||+||+||+
T Consensus 81 ~l~~~~~~~i~~l~g~~~t~Ee~~~~kkl~~~lg~~n~~~~~~~~~~~~~~~~~~~~~~~~si~~Ie~aD~illiGsn~r 160 (366)
T cd02774 81 FILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSDLCLLIGSNLR 160 (366)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHCCEEEEEECCCH
T ss_conf 99733975547994688888999999999998089863000134566656202313447886543755887999936720
Q ss_pred CCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHH
Q ss_conf 25731025778999759970661685012233443048986788888268778899987235310235443321047469
Q gi|254780859|r 388 LEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVE 467 (700)
Q Consensus 388 ~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~ 467 (700)
+|+|++++|||||+++|+++|+++++..+++|++.+++.....+.++++|.+++++.++++++|+|++|.++.++.++..
T Consensus 161 ~E~Plln~RiRka~~~g~~~i~~ig~~~~~~~~~~~lg~~~~~l~~~~~g~~~~~~~l~~ak~p~iiiG~~~~~~~~~~~ 240 (366)
T cd02774 161 VESPILNIRLRNRYNKGNKKIFVIGNKFDTTYPSKHIGLSLNTLLKILEGKHLFCKQLKKSKKPLIIIGSSFSLRKNYSF 240 (366)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCCHHH
T ss_conf 66389999999998566847997177522368413306688999998731067899986166867998424443745899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHCCCCCCEEEHHHH
Q ss_conf 89898999887410585334754246753104521017765865236888860167599807642201665434502211
Q gi|254780859|r 468 VMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDFSDKQALTVYIGS 547 (700)
Q Consensus 468 ~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~~~~~~~fvV~~d~ 547 (700)
.+..+..++..+++ .++.++..+|.++++..... . .......+.+|+++.+++....+..|+|||++
T Consensus 241 ~~~~~~~~~~~~~~------~~~~l~~~~~~~~~lg~~~~----~---~~~~~~~~~l~~~~~~~~~~~~~~~fvv~q~~ 307 (366)
T cd02774 241 IISKLKNFSSNNEN------NFNFLNIISNSLYYLGIKKF----N---SNNKKNLSNLYYIKETNFQKFNKNNFVIYQGH 307 (366)
T ss_pred HHHHHHHHHHHHHH------HHEEHHHHHHHHHHHHCCCC----C---CCCCCCCEEEEECCCCHHHHCCCCCEEEEECC
T ss_conf 99999999975410------31004788789987405562----4---00147760789547624432458878999888
Q ss_pred HHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 66668874557704786202472088208867420443288555740799999999980
Q gi|254780859|r 548 HGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 548 ~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
|++++|++||||||+++|+||+|||||+|||+|++++|+.|||+|||||+||+.|++.|
T Consensus 308 ~~~~~a~~ADvILP~a~~~Ek~GTfvN~EGR~Q~~~kav~ppG~ak~dW~Ilr~L~~~~ 366 (366)
T cd02774 308 HFLNLANNSNLILPSKTFFEKEALYLNLEGILQKTKKILSFKENIKSDDNIIFSLILFL 366 (366)
T ss_pred CCCCCHHHCCEEEECCCCCCCCCEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 78777223899981797444652699878942220506179977644889999998549
No 15
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=616.14 Aligned_cols=404 Identities=22% Similarity=0.281 Sum_probs=331.6
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCC-CEEECCHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-0001101100222-202324145668887
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARING-RLKPVSWDYALKAIK 308 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g-~~~~iSWdeAl~~ia 308 (700)
+|+|++|++||+|.++|+||+|+||+|++++|+|+||||+||||++++++ +|||++||+|+++ +|++|||||||++||
T Consensus 1 kT~C~~C~~~C~i~v~v~dg~v~rv~g~~~~p~n~g~lC~kG~~~~~~~~~pdRl~~Pm~Rr~~g~~~~iSWdeAl~~iA 80 (565)
T cd02754 1 KTTCPYCGVGCGVEIGVKDGKVVAVRGDPEHPVNRGRLCIKGLNLHKTLNGPERLTRPLLRRNGGELVPVSWDEALDLIA 80 (565)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCHHHHHHHHH
T ss_conf 96278852689979999999999998089999878686887763088757995304782888999779904999999999
Q ss_pred HHHCCCCCCEE-----EEECCCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHC----CCCCCCCCHHHHHCCCE
Q ss_conf 52013445314-----78504323235554788986-3687724202334446643401----25467787877401857
Q gi|254780859|r 309 SAVLSSDVKLG-----AVVGDLSSVEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGR----ASYIFNPTIQGIEEADA 378 (700)
Q Consensus 309 ~~L~~~~~~~g-----~~~g~~~t~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~----~~~~~~~~i~die~ad~ 378 (700)
++|+++++++| .+.|++.++|+.|++++|++ .+||+|+|++.+.|......+. +......+++|+++||+
T Consensus 81 ~kl~~i~~~~Gp~si~~~~sg~~~~e~~~~~~~l~~~~~gt~n~d~~~~~c~~~~~~~~~~~~G~~~~~~~~~D~~~ad~ 160 (565)
T cd02754 81 ERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGADGPPGSYDDIEHADC 160 (565)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCE
T ss_conf 99999999729985999906863169999999999973799875898643247788999986078999889888964999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHC--CCCEEECCCCCHHHHHH---HHCCCC---------------------------
Q ss_conf 9997385322573102577899975--99706616850122334---430489---------------------------
Q gi|254780859|r 379 MLIIGSNPRLEAAVLNARIRKRWRR--GNFPIAVIGDVGELRYK---YEHLGN--------------------------- 426 (700)
Q Consensus 379 illiG~Np~~~~Pvl~~rirka~~~--g~~~I~vi~~~~~l~~~---~~~l~~--------------------------- 426 (700)
||+||+||.++||+++.|++++.++ |++.|++++....++.. +..+.+
T Consensus 161 il~~G~N~~~~~p~~~~~i~~a~~~~~GaklvvidPr~t~ta~~Ad~~l~irPGtD~aL~la~~~~ii~~~~~D~~fv~~ 240 (565)
T cd02754 161 FFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIEEGLIDRDFIDA 240 (565)
T ss_pred EEEECCCHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 99988883686779999999999856998899956887818998664500489932767452515842056514234664
Q ss_pred ---CHHHHHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf ---8678888826877----------------889998723531023544332104746989898999887410585334
Q gi|254780859|r 427 ---GSEALADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWN 487 (700)
Q Consensus 427 ---~~e~l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~ 487 (700)
+++.+++.+..++ ++++.+++++++++++|.|+.++.+|.+..+++..|++++|+++++|+
T Consensus 241 ~t~gfe~~~~~v~~~tpe~aa~itGv~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~ig~~G~ 320 (565)
T cd02754 241 HTEGFEELKAFVADYTPEKVAEITGVPEADIREAARLFGEARKVMSLWTMGVNQSTQGTAANNAIINLHLATGKIGRPGS 320 (565)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 14426777777632888776675298889999999998717771899730231303799999999999998577888886
Q ss_pred CCCCCCCCCCCCCCHHCCCCCC------------------------------CCCCCHHHHH-----HCCCEEEECCCCH
Q ss_conf 7542467531045210177658------------------------------6523688886-----0167599807642
Q gi|254780859|r 488 GFAVLHTVASRVGALDLGFVPA------------------------------DDTINAMNIL-----DKTDIVFLLGADE 532 (700)
Q Consensus 488 G~~~L~~~~n~~Ga~d~g~~P~------------------------------~~~~~~~~~~-----~~~~~l~~~g~d~ 532 (700)
|++.+.+++|.+|+.++|.++. ..+....+++ ++++++|++|.||
T Consensus 321 g~~~l~g~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np 400 (565)
T cd02754 321 GPFSLTGQPNAMGGREVGGLANLLPGHRSVNNPEHRAEVAKFWGVPEGTIPPKPGLHAVEMFEAIEDGEIKALWVMCTNP 400 (565)
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 52534676665521102656666875445677788999999858980222777675699999887679962999917880
Q ss_pred HH----------CCCCCCEEEHHHHHH-HHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 20----------166543450221166-6688745577047862024720882088674204432885557407999999
Q gi|254780859|r 533 LD----------FSDKQALTVYIGSHG-DRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICA 601 (700)
Q Consensus 533 l~----------~~~~~~fvV~~d~~~-t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~ 601 (700)
+. .+.+.+|+|++|.|+ |+||++||||||+++|+|++|||+|+|||+|..+|+++|+||+|+||+|+++
T Consensus 401 ~~~~pd~~~~~~al~~~dfvVv~d~f~~t~Ta~~ADiVLPaat~~E~~g~~~n~e~~v~~~~~~v~P~gear~d~~I~~~ 480 (565)
T cd02754 401 AVSLPNANRVREALERLEFVVVQDAFADTETAEYADLVLPAASWGEKEGTMTNSERRVSLLRAAVEPPGEARPDWWILAD 480 (565)
T ss_pred HHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 20385989999985279969998564698722029889578873534770775786599756425997336709999999
Q ss_pred HHHHHCCC--CCCCCHHHHHHHHHHHCCC----CCCCCC
Q ss_conf 99980779--9687989999999997811----105542
Q gi|254780859|r 602 LADELKCS--LPFSSLSQLRSHLYSHHPH----FMQLDE 634 (700)
Q Consensus 602 La~~LG~~--~~~~~~~ei~~ei~~~~P~----~~~~~~ 634 (700)
||++||++ |+|.+.+|+++|+....|. |.+++.
T Consensus 481 LA~rlG~~~~f~~~~~e~~~~e~~~~~~~~~~~~~g~t~ 519 (565)
T cd02754 481 VARRLGFGELFPYTSPEEVFEEYRRLSRGRGADLSGLSY 519 (565)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 999848986889989999999999856787888789999
No 16
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=100.00 E-value=0 Score=620.69 Aligned_cols=369 Identities=29% Similarity=0.441 Sum_probs=304.8
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-00011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
+|||+||++||+|.+++|+|+|+||+|++++++|+||||+||||+|++++ +|||++||+|+||+|+++||||||++||+
T Consensus 1 ~SvC~~C~~GC~i~v~~~~g~v~rv~~~~~~~vN~g~lC~KGr~~~~~v~~~dRl~~PliR~~g~~~~isWdeAl~~ia~ 80 (414)
T cd02772 1 KSVSPHDALGSNLVVHVKNNKVMRVVPRENEAINECWLSDRDRFSYEGLNSEDRLTKPMIKKDGQWQEVDWETALEYVAE 80 (414)
T ss_pred CCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHHH
T ss_conf 95793999887828999899999987888998887620543131000237845046884914993657179999999999
Q ss_pred HHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHCCCEEEEEC
Q ss_conf 20134453-----1478504323235554788986368772420233444664340-12546778787740185799973
Q gi|254780859|r 310 AVLSSDVK-----LGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEEADAMLIIG 383 (700)
Q Consensus 310 ~L~~~~~~-----~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~ad~illiG 383 (700)
+|+++.++ +++++|++.|+|+.|++++|++.+||+|+|++.+.+....... .....++.+++||++||+||+||
T Consensus 81 kl~~i~~~~G~~sia~~~s~~~~~E~~~~~~kf~~~lGt~n~d~~~~~~~~~~~~~~~~~~~~~~~~~Di~~ad~ivl~G 160 (414)
T cd02772 81 GLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLGMPIAEISELDRVLVIG 160 (414)
T ss_pred HHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCEEEEEC
T ss_conf 99999987487533130489886899999999999769976245423444214565324877799888898599899985
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHC---CCC--CHHHHHH------------------H---HCC
Q ss_conf 8532257310257789997599706616850122334430---489--8678888------------------8---268
Q gi|254780859|r 384 SNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYEH---LGN--GSEALAD------------------L---VSG 437 (700)
Q Consensus 384 ~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~~~---l~~--~~e~l~~------------------~---~~g 437 (700)
+||+++||+++.|||+|+++|+++|++++...++.....+ ..+ ....+.+ . .+.
T Consensus 161 ~n~~~~~Pil~~rir~a~k~gaklividP~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (414)
T cd02772 161 SNLRKEHPLLAQRLRQAVKKGAKLSAINPADDDFLFPLSGKAIVAPSALANALAQVAKALAEEKGLAVPDEDAKVEASEE 240 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 88788759999999999987998999868752655416755042874589999999999998635881677764451889
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHH
Q ss_conf 77889998723531023544332104746989898999887410585334754246753104521017765865236888
Q gi|254780859|r 438 QHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMN 517 (700)
Q Consensus 438 ~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~ 517 (700)
...++..+..+++++|++|.++.+++++......+..+...+|. .+..+...+|.+|+.++|.+|.. +.....
T Consensus 241 ~~~~a~~~~~a~~~~ii~g~~~~~~~~~~~~~~~~~~l~~~~g~------~~g~l~~~~n~~G~~~~g~~p~~-~~~~~~ 313 (414)
T cd02772 241 ARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGA------TLGVLGEGANSVGAYLAGALPHG-GLNAAA 313 (414)
T ss_pred HHHHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCHHHHHHHCCCCCC-CCCHHH
T ss_conf 99999998527882999891475374599999999999998688------61657887305878873679888-857888
Q ss_pred HH-HCCCEEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHH-HCCEEECCCCCCCCCCEEEEECCEEEEECCC
Q ss_conf 86-01675998076422----------016654345022116666887-4557704786202472088208867420443
Q gi|254780859|r 518 IL-DKTDIVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQ-SADVILPGAAYTEKSGLWVNTEGRVQMGMRA 585 (700)
Q Consensus 518 ~~-~~~~~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~-~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~a 585 (700)
++ ...+.++++|.||. +.+++.+|+|++|.|+|+|+. +||||||+++|+||+|||||+|||+|+++|+
T Consensus 314 ~~~~~~~~~~i~~~nP~~~~~~~~~~~~al~k~df~Vv~d~f~teta~~~ADVVLPaat~~Ek~Gt~~n~egrvq~~~~~ 393 (414)
T cd02772 314 MLEQPRKAYLLLNVEPELDCANPAQALAALNQAEFVVALSAFASAALLDYADVLLPIAPFTETSGTFVNLEGRVQSFKGV 393 (414)
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCEEECCCCCCCCCEEEECCCCEEEEECCC
T ss_conf 74075644999756733367798999999757994999878689026618859986988543780798778833872426
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 288555740799999999980
Q gi|254780859|r 586 IFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 586 v~p~geak~dw~Il~~La~~L 606 (700)
++|||||||||+||++|+++|
T Consensus 394 v~p~Geak~dw~Il~~l~~~l 414 (414)
T cd02772 394 VKPLGEARPAWKVLRVLGNLL 414 (414)
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 589855738899999998549
No 17
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=606.30 Aligned_cols=381 Identities=20% Similarity=0.223 Sum_probs=322.5
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEECCC--CEEECCHHHHHHHH
Q ss_conf 2012116886436675159999885247888777741135542210000-00001101100222--20232414566888
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARING--RLKPVSWDYALKAI 307 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~g--~~~~iSWdeAl~~i 307 (700)
+|||+||++||++.++|++|+|++|+|++++|+|+|.||.||+++++.+ ++|||++||+|++| +|++|||||||++|
T Consensus 1 rt~C~yC~vgCgl~~~v~dgkvv~veGdpd~PvN~G~LC~KG~~~~~~v~~pdRL~~PL~R~~Gsg~w~~ISWDEAld~I 80 (649)
T cd02752 1 RTICPYCSVGCGLIAYVQNGVWVHQEGDPDHPVNRGSLCPKGAALRDFVHSPKRLKYPMYRAPGSGKWEEISWDEALDEI 80 (649)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCEEECCCCCCEEECCHHHHHHHH
T ss_conf 97893862678859999799899957689998788538935131476507986314988878999974785599999999
Q ss_pred HHHHCCCCCCE-----------------EEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHC----CCCCC
Q ss_conf 75201344531-----------------4785043232355547889863687724202334446643401----25467
Q gi|254780859|r 308 KSAVLSSDVKL-----------------GAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGR----ASYIF 366 (700)
Q Consensus 308 a~~L~~~~~~~-----------------g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~----~~~~~ 366 (700)
|++|+++++++ +.+.|+..++|+.|++++|++.|||+|+|+.++.|+.....+. +...+
T Consensus 81 A~klk~ird~~~~~~~~~g~~~~gp~sia~~gs~~~~nEe~yl~~kf~r~lGt~nid~~aRlChsstv~gl~~tfG~ga~ 160 (649)
T cd02752 81 ARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQARIUHSPTVAGLANTFGRGAM 160 (649)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999999975311023442147888079986688783799999999998298754676664527899999986078988
Q ss_pred CCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEECCCCCHHHH---HHHHCCCCCHHH-----H------
Q ss_conf 787877401857999738532257310257789997-5997066168501223---344304898678-----8------
Q gi|254780859|r 367 NPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWR-RGNFPIAVIGDVGELR---YKYEHLGNGSEA-----L------ 431 (700)
Q Consensus 367 ~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~-~g~~~I~vi~~~~~l~---~~~~~l~~~~e~-----l------ 431 (700)
++++.|+++||+||+||+||.++||+...++.+|.+ +|+++|+++++....+ ..+..+.++++. +
T Consensus 161 tn~~~Di~~ad~ili~G~N~ae~hPv~~~~i~~ak~k~GaKlIVVDPR~t~TA~~AD~~l~iRPGTDiAll~gm~~~ii~ 240 (649)
T cd02752 161 TNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYIIR 240 (649)
T ss_pred CCCHHHHHHCCEEEEECCCCHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 88976797599999989880011750589999999867985999878876336750851176899689999999999985
Q ss_pred -----HHHHCCC-----CHHHHHHHHC----CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf -----8882687-----7889998723----5310235443321047469898989998874105853347542467531
Q gi|254780859|r 432 -----ADLVSGQ-----HPFFKKLQEA----TRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVAS 497 (700)
Q Consensus 432 -----~~~~~g~-----~~~~~~l~~a----~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n 497 (700)
.+-+.|. ..+++.++++ +..+|+|++|++||.+|+++++++++|++++||+|++|+|+++|++++|
T Consensus 241 ytpe~v~~itGvp~~~i~~~A~~~a~~~~~~k~~~i~~~mG~tqh~~G~~~vra~~~L~Ll~GniGrpG~G~~~lrGq~N 320 (649)
T cd02752 241 YTPEEVEDICGVPKEDFLKVAEMFAATGRPDKPGTILYAMGWTQHTVGSQNIRAMCILQLLLGNIGVAGGGVNALRGHSN 320 (649)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 89999998779399999999999985667888528997363313200699999999999996899998988884889888
Q ss_pred CCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHHCC----------
Q ss_conf 045210177658652368888601675998076422----------016654345022116666887455----------
Q gi|254780859|r 498 RVGALDLGFVPADDTINAMNILDKTDIVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQSAD---------- 557 (700)
Q Consensus 498 ~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~AD---------- 557 (700)
+||+.|||.+|..- . -|+.|.||+ +.+.+++|+|++|.|.|+||.+||
T Consensus 321 vQGa~d~g~l~~~l--P----------Gy~~G~NP~~s~p~~~~~~~al~kld~lVv~D~f~teta~~~~~~~~~~~~i~ 388 (649)
T cd02752 321 VQGATDLGLLSHNL--P----------GYLGGQNPNSSFPNANKVRRALDKLDWLVVIDPFPTETAAFWKNPGMDPKSIQ 388 (649)
T ss_pred CCCCCCCCCCCCCC--C----------CCCCCCCHHCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCCCC
T ss_conf 88864435575668--8----------63335174305858899999987799699958983567998753488842233
Q ss_pred ---EEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-------------------CCCCCH
Q ss_conf ---7704786202472088208867420443288555740799999999980779-------------------968798
Q gi|254780859|r 558 ---VILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS-------------------LPFSSL 615 (700)
Q Consensus 558 ---VVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~-------------------~~~~~~ 615 (700)
+|||+|+|+||+|||||+|||+|+.+||++||||||+||||+.+|++|||+- ..+.++
T Consensus 389 tev~~LPaa~~~EkeGt~tns~R~iq~~~kav~PpGeak~D~~I~~~l~~rlg~~y~~~~~~~~~~i~~~~~~~~~~~~~ 468 (649)
T cd02752 389 TEVFLLPAACQYEKEGSITNSGRWLQWRYKVVEPPGEAKSDGDILVELAKRLGFLYEKEGGAFPEPITKWNYGYGDEPTP 468 (649)
T ss_pred CCEEEECCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCH
T ss_conf 43699357640105733551677012110136998455768999999999999999767898831220365568998999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780859|r 616 SQLRSHLY 623 (700)
Q Consensus 616 ~ei~~ei~ 623 (700)
+++..||-
T Consensus 469 ~~v~~ein 476 (649)
T cd02752 469 EEIAREIN 476 (649)
T ss_pred HHHHHHHC
T ss_conf 99999974
No 18
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=100.00 E-value=0 Score=599.13 Aligned_cols=222 Identities=31% Similarity=0.504 Sum_probs=210.9
Q ss_pred CCEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10499999999996888758899998689546121279996456000479997179887020026566456637666853
Q gi|254780859|r 3 MMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELP 82 (700)
Q Consensus 3 ~mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~ 82 (700)
-||+|+|||++++|++|+||||||+++||+||+|||||+|+|+|+||||+||||| .+++++||+|||+|||
T Consensus 2 ~mvtltIdG~~v~v~~G~tILeaa~~~Gi~IP~LCy~~~l~~~G~CR~C~VEveG-~~~lv~sC~t~v~eGM-------- 72 (236)
T PRK07569 2 SVKTLTIDDQLVSAREGETILQAAREAGIPIPTLCHLEGVSDVGACRLCLVEVEG-SNKLLPACVTPVAEGM-------- 72 (236)
T ss_pred CEEEEEECCEEEEECCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEEECC-CCCCCCCCCCCCCCCC--------
T ss_conf 7389999999999689895999999859984725468993988866732799899-8531566375889984--------
Q ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCC
Q ss_conf 79819989999999999999827899887788878883799899838986747775677878885602100643290100
Q gi|254780859|r 83 EVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCT 162 (700)
Q Consensus 83 ~v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~ 162 (700)
+|+|+||+|+++||.+|||||+|||+|||+||++|+|+|||++++||+..+||...++..+.+..+|+|.+||||||+|+
T Consensus 73 ~V~T~s~~v~~~Rk~~lellL~~H~~dC~~C~~~g~CeLQ~la~~~g~~~~r~~~~~~~~~~d~s~p~i~~D~~rCI~Cg 152 (236)
T PRK07569 73 VVQTNTPRLQEYRRMIVELLFAERNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPKRPVDISHPRFGIDHNRCVLCT 152 (236)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 89929989999999999999972766576346688748999999858987767654677765689974674477386087
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC----CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 2364543206874003330666412662058755----56546622201212101223323334443023522012116
Q gi|254780859|r 163 RCVRFITEVAGVSELGLVGRGENAEITTYLEQSL----TSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMD 237 (700)
Q Consensus 163 RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~----~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C 237 (700)
||||+|+||+|.++|++.+||++++|+++.+.++ .|++||+||++||||||++|+ +|.||+.+.+.-++++
T Consensus 153 RCVr~C~evqg~~ai~~~~RG~~~~I~~~~~~~~~~s~~C~~CG~Cv~vCPvGAL~eK~----~~~we~~~~~~~~~~~ 227 (236)
T PRK07569 153 RCVRVCDEIEGAHTWDVAGRGVNSRVIADLNQPWGTSDACTSCGKCVQACPTGAIFRKG----ATVGEMEKDRDKLEFL 227 (236)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHCCCCC----CHHHHHHHCCCCEEEE
T ss_conf 79988875328736886147988888367788744445521256534219202265577----5377653178856899
No 19
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=100.00 E-value=0 Score=593.95 Aligned_cols=369 Identities=44% Similarity=0.665 Sum_probs=306.9
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-00011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
+|||+|||+||+|.+++++|+|+||+|++++|+|+||||+||||+|++++ +|||++||+|.+|+|++|||||||++||+
T Consensus 1 ~sIc~~CsvGC~i~v~~~~g~v~rv~~~~~~~vn~G~lC~kGr~~~~~~~~~dRl~~Pl~R~~g~f~~isWdeAl~~ia~ 80 (386)
T cd02768 1 ESIDVHDALGSNIRVDVRGGEVMRILPRENEAINEEWISDKGRFGYDGLNSRQRLTQPLIKKGGKLVPVSWEEALKTVAE 80 (386)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEECCCCEEEECHHHHHHHHHH
T ss_conf 94795889999808999899999987889988788630764663664337843205785906997768179999999999
Q ss_pred HHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHCCCEEEEECCCCC
Q ss_conf 201344-531478504323235554788986368772420233444664340-125467787877401857999738532
Q gi|254780859|r 310 AVLSSD-VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEEADAMLIIGSNPR 387 (700)
Q Consensus 310 ~L~~~~-~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~ad~illiG~Np~ 387 (700)
+|++++ +++++++|++.++|++|++++|++.+||+|+++....+....... ...+..+.++.||++||+||+||.||+
T Consensus 81 ~l~~~~~~~~~~~~s~~~~~e~~~~~~~f~~~lGs~n~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~ 160 (386)
T cd02768 81 GLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEADAVLLIGSNLR 160 (386)
T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCEEEEECCCHH
T ss_conf 99861885499996698665899999999875588752245322005788875416777998789974998999817767
Q ss_pred CCCCCHHHHHHHHHHCCCCEEECCCCCH-----HHHHHHHCCCCCHHHHHHHHCCCC--HHHHHHHHCCCCHHHHHHHHH
Q ss_conf 2573102577899975997066168501-----223344304898678888826877--889998723531023544332
Q gi|254780859|r 388 LEAAVLNARIRKRWRRGNFPIAVIGDVG-----ELRYKYEHLGNGSEALADLVSGQH--PFFKKLQEATRPLIIVGQGAL 460 (700)
Q Consensus 388 ~~~Pvl~~rirka~~~g~~~I~vi~~~~-----~l~~~~~~l~~~~e~l~~~~~g~~--~~~~~l~~a~~~~ii~G~g~~ 460 (700)
+++|+++.|+|+++++++.+++++++.. +..+...+.....+.+.+..++.. ++++.+..++++++++|.++.
T Consensus 161 ~~~pi~~~rir~a~~~~ga~l~vi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~a~~~~ii~G~~~~ 240 (386)
T cd02768 161 KEAPLLNARLRKAVKKKGAKIAVIGPKDTDLIADLTYPVSPLGASLATLLDIAEGKHLKPFAKSLKKAKKPLIILGSSAL 240 (386)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCEECCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 86579999999999839897999878674305760865111862499975336703679999998627882999882104
Q ss_pred HCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH------
Q ss_conf 10474698989899988741058533475424675310452101776586523688886016759980764220------
Q gi|254780859|r 461 RASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELD------ 534 (700)
Q Consensus 461 ~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~------ 534 (700)
++ .+...+.++.+++..++..+..+ .+....|..|+...|... +.... ......++++++.+.||..
T Consensus 241 ~~-~~~~~l~~~~~l~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~-~~~~~-~~~~~~~~~l~v~~~~~~~~~p~~~ 313 (386)
T cd02768 241 RK-DGAAILKALANLAAKLGTGAGLW----NGLNVLNSVGARLGGAGL-DAGLA-LLEPGKAKLLLLGEDELDRSNPPAA 313 (386)
T ss_pred CC-CHHHHHHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHHCCH-HHHHH-CCCCCCEEEEEEECCCCCCCCHHHH
T ss_conf 68-67999999999999768897766----766155077776432258-88863-0668960799997887353897899
Q ss_pred -CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -166543450221166668874557704786202472088208867420443288555740799999999980
Q gi|254780859|r 535 -FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 535 -~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
++++.+|+|++|.|+|+|+++||||||+++|+|++|||+|+|||+|+++|+++||||+||||+||.+||++|
T Consensus 314 ~al~~ld~~Vv~D~f~t~ta~~ADvVLPaat~~E~~gt~~n~egr~q~~~~~v~p~gear~dw~I~~~La~~l 386 (386)
T cd02768 314 VALAAADAFVVYQGHHGDTGAQADVILPAAAFTEKSGTYVNTEGRVQRFKKAVSPPGDAREDWKILRALSNLL 386 (386)
T ss_pred HHHCCCCCEEEEECCCCHHHHCCCEEEECCCCCCCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9860799899990668935751949981899722481899558940774546178976878999999998059
No 20
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=602.38 Aligned_cols=202 Identities=43% Similarity=0.826 Sum_probs=194.2
Q ss_pred EEEECCEEEEE-CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999999996-88875889999868954612127999645600047999717988702002656645663766685379
Q gi|254780859|r 6 KLKVDGIEIEV-PSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEV 84 (700)
Q Consensus 6 ~~~Idg~~v~v-~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v 84 (700)
-.++|-++|+. |++.+||++++++||+||||||||+|+++|||||||||||| .+||+|||+|||+||| +|
T Consensus 70 ~~~~~~~~~~~~p~eeNLLeV~eraGI~IPrFCYH~~LsiaGnCRMCLVEVEG-~~klvaSCatpV~eGM--------~V 140 (297)
T PTZ00305 70 IMFVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDG-TQNLVVSCATVALPGM--------SI 140 (297)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCC--------EE
T ss_conf 89854887312577440999999859977766579998856763376999689-9888746376478998--------88
Q ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHH
Q ss_conf 81998999999999999982789988778887888379989983898674777567787888560210064329010023
Q gi|254780859|r 85 FTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRC 164 (700)
Q Consensus 85 ~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RC 164 (700)
+|+||+|+++||+||||||+|||||||||||||||+|||+++.||.+.|||.+.||.++++++||+|+++||||||||||
T Consensus 141 ~TnS~~VkkARk~VmEfLLiNHPlDCPICDqgGECdLQD~a~~yG~d~sRf~e~KR~V~dk~~GPlI~t~MtRCIhCTRC 220 (297)
T PTZ00305 141 ITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRC 220 (297)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCHH
T ss_conf 64999999999999999996799768878878971447889984888400104764466566797100047746465242
Q ss_pred HHHHHHCCCCCCEEEECCCCCCEEEECCCC-CCCCCCCCCEEECCCCCCCCCC
Q ss_conf 645432068740033306664126620587-5556546622201212101223
Q gi|254780859|r 165 VRFITEVAGVSELGLVGRGENAEITTYLEQ-SLTSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 165 VR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~-~~~~e~~Gncvd~CPvGALt~k 216 (700)
||||+||+|+.+||++|||.+++|+||+|+ .+.++.++|++|+||||||.--
T Consensus 221 VRF~~Evag~~~LGmiGRG~~seI~t~ld~~~~~~~~~~~v~~lcpvg~~~~~ 273 (297)
T PTZ00305 221 VRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLG 273 (297)
T ss_pred HHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCEEEC
T ss_conf 43077652760013120576530023344665520037856650555404555
No 21
>PRK13532 nitrate reductase; Provisional
Probab=100.00 E-value=0 Score=565.13 Aligned_cols=386 Identities=20% Similarity=0.197 Sum_probs=302.3
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEEC-------CCCEEEC
Q ss_conf 23522012116886436675159999885247888777741135542210000-000011011002-------2220232
Q gi|254780859|r 227 LTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARI-------NGRLKPV 298 (700)
Q Consensus 227 l~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~-------~g~~~~i 298 (700)
.+.++|+|.+|++||++.++|+||+|++|+|++++|+|+|.||.|||++++.+ ++|||++||+|+ +|+|++|
T Consensus 39 ~~~~~t~C~~C~~gCgl~~~v~dG~vv~v~gd~~~p~n~G~lC~KG~~~~~~~y~pdRl~~Pl~R~~~g~~r~~G~f~~i 118 (828)
T PRK13532 39 IKWDKAPCRFCGTGCGVLVGTKDGRVVATQGDPDAPVNRGLNCIKGYFLSKIMYGKDRLTQPLLRMKDGKYDKEGEFTPV 118 (828)
T ss_pred CEEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEE
T ss_conf 45997689997278986999989999998768999988831885122036765798612688678989986889858994
Q ss_pred CHHHHHHHHHHHHCCCCCCEE-----EEECCCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHCC----CCCCCC
Q ss_conf 414566888752013445314-----78504323235554788986-36877242023344466434012----546778
Q gi|254780859|r 299 SWDYALKAIKSAVLSSDVKLG-----AVVGDLSSVEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGRA----SYIFNP 368 (700)
Q Consensus 299 SWdeAl~~ia~~L~~~~~~~g-----~~~g~~~t~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~~----~~~~~~ 368 (700)
||||||++||++|+++++++| .+.|+..++|+.|++++|++ .+||+|+|++++.|+.+...+.. ......
T Consensus 119 SWdEAld~iA~klk~i~~~~G~~aia~~gsg~~~~~~~y~~~k~~~~~~gt~n~d~~~~~c~~~~~~~~~~~fG~~~~~~ 198 (828)
T PRK13532 119 SWDQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEGYAASKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMG 198 (828)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 39999999999999999986988699970787634778999999974047886587611316899999998708899987
Q ss_pred CHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH--HHCCCCEEECCCCCHH---HHHHHHCCCC-----------------
Q ss_conf 78774018579997385322573102577899--9759970661685012---2334430489-----------------
Q gi|254780859|r 369 TIQGIEEADAMLIIGSNPRLEAAVLNARIRKR--WRRGNFPIAVIGDVGE---LRYKYEHLGN----------------- 426 (700)
Q Consensus 369 ~i~die~ad~illiG~Np~~~~Pvl~~rirka--~~~g~~~I~vi~~~~~---l~~~~~~l~~----------------- 426 (700)
+++|+++||+||+||+||.+.||+++.|+.++ .++|.+.|++++.... ++..+..+.+
T Consensus 199 ~~~D~~~ad~iv~~G~N~ae~hp~~~~ri~~~~~~~~g~k~ividp~~t~ta~~AD~~l~irPGTD~Al~~am~~~ii~~ 278 (828)
T PRK13532 199 CYDDIEAADAFVLWGSNMAEMHPILWSRITDRRLSNPHVKVAVLSTFEHRSFELADNGIIFTPQTDLAILNYIANYIIQN 278 (828)
T ss_pred CHHHHHHCCEEEEECCCHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 77679869999998788578577899999999975599989993698884056641124568996699999999999977
Q ss_pred ----------------------------------------------CHHHHHHHHCCCCH----------------HHHH
Q ss_conf ----------------------------------------------86788888268778----------------8999
Q gi|254780859|r 427 ----------------------------------------------GSEALADLVSGQHP----------------FFKK 444 (700)
Q Consensus 427 ----------------------------------------------~~e~l~~~~~g~~~----------------~~~~ 444 (700)
+++.+++.++.+++ +++.
T Consensus 279 ~l~D~~Fv~~~T~~~~g~~d~Gy~~~~~~~~~~~~~~~~~~~~~~~~fe~l~~~v~~ytpe~aa~itGvp~e~I~~~A~~ 358 (828)
T PRK13532 279 NAVNWDFVNKHTNFRKGATDIGYGLRPTHPLEKKAKNPGAGASTPISFEEFKKFVAEYTLEKTAKMSGVPKEQLEQLAKL 358 (828)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 88469999987332334432344445431234332023444556778999999876189999999879499999999999
Q ss_pred HHHCCCCHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CHHCCCCC----C---------
Q ss_conf 872353102-35443321047469898989998874105853347542467531045-21017765----8---------
Q gi|254780859|r 445 LQEATRPLI-IVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVG-ALDLGFVP----A--------- 509 (700)
Q Consensus 445 l~~a~~~~i-i~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~G-a~d~g~~P----~--------- 509 (700)
+++++++++ +|++|+.+|.+|.+..+++.+|++++||+|++|+|++.|++++|.+| +.++|.++ .
T Consensus 359 ~a~~~~~~~~~~~~G~~q~~~G~~~~~a~~~L~~ltGnig~pG~g~~~l~G~~n~~G~~~~~G~~~~~lP~~~~~~~p~~ 438 (828)
T PRK13532 359 YADPNRKVVSFWTMGFNQHTRGVWANNLVYNIHLLTGKISTPGNGPFSLTGQPSACGTAREVGTFSHRLPADMVVTNPKH 438 (828)
T ss_pred HHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 84568740023567877221779999999999987366676888654445674677744320557667987544688899
Q ss_pred -----------------CCCCCHHHHH-----HCCCEEEECCCCHHHCC------------CCCCEEEHHHHHHHHHHHH
Q ss_conf -----------------6523688886-----01675998076422016------------6543450221166668874
Q gi|254780859|r 510 -----------------DDTINAMNIL-----DKTDIVFLLGADELDFS------------DKQALTVYIGSHGDRGAQS 555 (700)
Q Consensus 510 -----------------~~~~~~~~~~-----~~~~~l~~~g~d~l~~~------------~~~~fvV~~d~~~t~tA~~ 555 (700)
..+.+...+. ++++++|+++.||+... +..+|+|++|.|+|+||++
T Consensus 439 ~~~~~~~w~~p~~~~~~~~g~~~~~~~~~~~~g~ik~~~v~~~Np~~~~pn~~~~~~~~~~~~~~flVv~D~f~t~Ta~~ 518 (828)
T PRK13532 439 REIAEKIWKLPEGTIPPKPGYHAVLQDRMLKDGKLNAYWVMCNNNMQAGPNINEERLPGWRNPDNFIVVSDPYPTVSALA 518 (828)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99999870798243689888238888877655873499995467131387541999999868998799972688853544
Q ss_pred CCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 557704786202472088208867420443288555740799999999980779968
Q gi|254780859|r 556 ADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPF 612 (700)
Q Consensus 556 ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~ 612 (700)
||||||+++|+||+|+|+|+|+|+|..+|+|+||||||+||||+.+||+|||.+-.|
T Consensus 519 ADvVLPaat~~Ek~g~~~n~~r~~q~~~k~v~ppgEak~D~~i~~elakr~~~~~~~ 575 (828)
T PRK13532 519 ADLILPTAMWVEKEGAYGNAERRTQFWRQQVKAPGEAKSDLWQLVEFSKRFKTEEVW 575 (828)
T ss_pred CCEEECCCCCCCCCCCEECCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 778855774020266343476503420110278256666699999999871742025
No 22
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=0 Score=537.95 Aligned_cols=378 Identities=17% Similarity=0.179 Sum_probs=298.4
Q ss_pred EECCCC-CCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEEC---CCCEEECCHHHHHH
Q ss_conf 201211-6886436675159999885247888777741135542210000-000011011002---22202324145668
Q gi|254780859|r 231 DSIDVM-DALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARI---NGRLKPVSWDYALK 305 (700)
Q Consensus 231 ~SvC~~-C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~---~g~~~~iSWdeAl~ 305 (700)
+|+|++ |++||++.++|+||+|+||+|++++|+|+||||+|||++++++ ++|||++||+|+ +|+|++|||||||+
T Consensus 1 kt~C~~~C~~~C~i~v~v~dg~v~~v~g~~~~p~n~G~lC~kG~~~~~~~y~pdRl~~Pl~R~g~~~g~~~~iSWdeAl~ 80 (501)
T cd02766 1 RSVCPLDCPDTCSLLVTVEDGRIVRVEGDPAHPYTRGFICAKGARYVERVYSPDRLLTPLKRVGRKGGQWERISWDEALD 80 (501)
T ss_pred CCEECCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCEECHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEECCHHHHHH
T ss_conf 97106998888887999989999998808999877875587355117763797531598581479999788827999999
Q ss_pred HHHHHHCCCCCCEEE-----EE-CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHH----HCCCCCCCCCHHHHHC
Q ss_conf 887520134453147-----85-0432323555478898636877242023344466434----0125467787877401
Q gi|254780859|r 306 AIKSAVLSSDVKLGA-----VV-GDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSY----GRASYIFNPTIQGIEE 375 (700)
Q Consensus 306 ~ia~~L~~~~~~~g~-----~~-g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~----~~~~~~~~~~i~die~ 375 (700)
+||++|+++++++|. +. ++..+.+..+..++|.+.+|++|++.. .|...... ..+. ....+..|+++
T Consensus 81 ~ia~kl~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~--~c~~~~~~a~~~~~G~-~~~~~~~D~~~ 157 (501)
T cd02766 81 TIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGT--ICSGAGIEAQKYDFGA-SLGNDPEDMVN 157 (501)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC--CCCHHHHHHHHHHHCC-CCCCCHHHHHH
T ss_conf 99999999998609855998537787318999999999972798888888--7307799999988388-88999889962
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHH---HCCCC--------------------------
Q ss_conf 8579997385322573102577899975997066168501223344---30489--------------------------
Q gi|254780859|r 376 ADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKY---EHLGN-------------------------- 426 (700)
Q Consensus 376 ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~---~~l~~-------------------------- 426 (700)
||+||+||+||.+++|....++++|.++|++.|++++.....+... ..+.+
T Consensus 158 a~~il~~G~N~~~~~~~~~~~~~~a~~~GaklivvdPr~t~ta~~Ad~~l~irPGTD~al~la~~~~ii~e~~~D~~fv~ 237 (501)
T cd02766 158 ADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFREGLYDRDFLA 237 (501)
T ss_pred CCEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 96999989881121553899999999879979996688771788628700467997799985221399877995332577
Q ss_pred ----CHHHHHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ----8678888826877----------------88999872353102354433210474698989899988741058533
Q gi|254780859|r 427 ----GSEALADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSW 486 (700)
Q Consensus 427 ----~~e~l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g 486 (700)
+++.+++.+..++ ++++.+++++++++++|+|+.++.+|.++.+++..|.+++|+++++|
T Consensus 238 ~~t~Gfe~l~~~v~~~tpe~~a~itgv~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~g~~G 317 (501)
T cd02766 238 RHTEGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQRYRNGGQNVRAIDALPALTGNIGVPG 317 (501)
T ss_pred HHCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 75160999998765499999877709999999999997414686489845500224409999999999999868999988
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHHC-----------CCCCCEEEHHHHHHHHHHHH
Q ss_conf 4754246753104521017765865236888860167599807642201-----------66543450221166668874
Q gi|254780859|r 487 NGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDF-----------SDKQALTVYIGSHGDRGAQS 555 (700)
Q Consensus 487 ~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~~-----------~~~~~fvV~~d~~~t~tA~~ 555 (700)
+|+...... ..++++|++|.||+.. .++.+|+|++|.|+|+||++
T Consensus 318 gG~~~~~~~------------------------p~ik~l~v~g~Np~~~~p~~~~~~~al~~~~~fvVv~D~~~teTa~~ 373 (501)
T cd02766 318 GGAFYSNSG------------------------PPVKALWVYNSNPVAQAPDSNKVRKGLAREDLFVVVHDQFMTDTARY 373 (501)
T ss_pred CCCCCCCCC------------------------CCCEEEEEECCCHHHHCCCHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 760257889------------------------98459999798878859099999999976688068630447736775
Q ss_pred CCEEECCCCCCCCCCEEEEECCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCCHHHHHHH-HHHHCCCCCC
Q ss_conf 55770478620247208820886-7420443288555740799999999980779--968798999999-9997811105
Q gi|254780859|r 556 ADVILPGAAYTEKSGLWVNTEGR-VQMGMRAIFPPGDAKEDWEIICALADELKCS--LPFSSLSQLRSH-LYSHHPHFMQ 631 (700)
Q Consensus 556 ADVVLP~a~~~Ek~Gtf~N~EgR-vQ~~~~av~p~geak~dw~Il~~La~~LG~~--~~~~~~~ei~~e-i~~~~P~~~~ 631 (700)
||||||+++|+||+|+|+|.++| +|..+|+|+|+||+|+||+|+++||++||+. +.+.+.+|..++ +....+.+.+
T Consensus 374 ADvVLPaa~~~E~~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~~~~~~~e~~~~~~~~~~~~~~~ 453 (501)
T cd02766 374 ADIVLPATTFLEHEDVYASYWHYYLQYNEPAIPPPGEARSNTEIFRELAKRLGFGEPPFEESDEEWLDQALDGTGLPLEG 453 (501)
T ss_pred CCEECCCCCCCEECCEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 14852457525107622468873899977677998557799999999999828997677999999999985527998133
Q ss_pred CCCC
Q ss_conf 5422
Q gi|254780859|r 632 LDEI 635 (700)
Q Consensus 632 ~~~~ 635 (700)
+.+.
T Consensus 454 ~~~~ 457 (501)
T cd02766 454 IDLE 457 (501)
T ss_pred CHHH
T ss_conf 6066
No 23
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=534.61 Aligned_cols=372 Identities=21% Similarity=0.214 Sum_probs=293.6
Q ss_pred EEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEEC----CCCEEECCHHHHH
Q ss_conf 22012116886436675159999885247888777741135542210000-000011011002----2220232414566
Q gi|254780859|r 230 TDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARI----NGRLKPVSWDYAL 304 (700)
Q Consensus 230 ~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~----~g~~~~iSWdeAl 304 (700)
|+|+|++|++||+|.+++++|+|+||+|++++|+|+||+|+||||+++++ ++|||++||+|+ +|+|++|||||||
T Consensus 1 V~T~C~~C~~gC~l~v~v~~g~v~rv~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~g~rG~G~~~~iSWdeAl 80 (454)
T cd02755 1 VPSICEMCSSRCGILARVEDGRVVKIDGNPLSPLSRGKLCARGNAGIQLLYDPDRLKKPLIRVGERGEGKFREASWDEAL 80 (454)
T ss_pred CCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCCCHHCCCEEECCCCCCCCEEEECHHHHH
T ss_conf 97058897688997999989999998758999977856777356468874597541288885666888987882799999
Q ss_pred HHHHHHHCCCCCCEEE---EECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCC---CCCCCCCHHHHHCCCE
Q ss_conf 8887520134453147---850432323555478898636877242023344466434012---5467787877401857
Q gi|254780859|r 305 KAIKSAVLSSDVKLGA---VVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRA---SYIFNPTIQGIEEADA 378 (700)
Q Consensus 305 ~~ia~~L~~~~~~~g~---~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~---~~~~~~~i~die~ad~ 378 (700)
++||++|+++++++|. +.++....++ +++++|++.+|++|++.+.+.+......+.. ......++.|++++|+
T Consensus 81 ~~ia~kl~~i~~~~G~~~i~~~~~~~~~~-~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~D~~~ad~ 159 (454)
T cd02755 81 QYIASKLKEIKEQHGPESVLFGGHGGCYS-PFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSFGGEVNPDFENARY 159 (454)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCE
T ss_conf 99999999999860995899977861699-99999999709984068865340368899998526888987566985989
Q ss_pred EEEECCCCCCC-CCCHHHHHHHHHHCCCCEEECCCCCHHHHHH---HHCCCCCH--------------------------
Q ss_conf 99973853225-7310257789997599706616850122334---43048986--------------------------
Q gi|254780859|r 379 MLIIGSNPRLE-AAVLNARIRKRWRRGNFPIAVIGDVGELRYK---YEHLGNGS-------------------------- 428 (700)
Q Consensus 379 illiG~Np~~~-~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~---~~~l~~~~-------------------------- 428 (700)
||+||+|+.++ +|....++++|.++|++.|++++....++.. +..+.+++
T Consensus 160 il~~G~n~~~~~~~~~~~~~~~a~~~GaklividPr~t~ta~~Ad~~l~irPGtD~al~~a~~~~ii~e~l~D~~fv~~~ 239 (454)
T cd02755 160 IILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIPIKPGTDLAFVLALIHVLISENLYDAAFVEKY 239 (454)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99994465323563899999999975997999717776488965434077999659999888788987688676889985
Q ss_pred ----HHHHHHHCCCC----------------HHHHHHHHCCCCHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf ----78888826877----------------889998723531023-544332104746989898999887410585334
Q gi|254780859|r 429 ----EALADLVSGQH----------------PFFKKLQEATRPLII-VGQGALRASDNVEVMANIAKLVIDVGGISDSWN 487 (700)
Q Consensus 429 ----e~l~~~~~g~~----------------~~~~~l~~a~~~~ii-~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~ 487 (700)
+.+++.+..++ ++++.+.++++++++ .|.+..++.++....+++..|+.++|+++++|+
T Consensus 240 t~g~~~~~~~~~~~tpe~aa~itGv~~~~I~~lA~~~a~~~~~~~~~~g~~~~~~~~~~~~~~a~~~l~~l~G~~g~~GG 319 (454)
T cd02755 240 TNGFELLKAHVKPYTPEWAAQITDIPADTIRRIAREFAAAAPHAVVDPGWRGTFYSNSFQTRRAIAIINALLGNIDKRGG 319 (454)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 56299999997634989998762997999999999997059969997786626247689999999999998478999987
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHHCC
Q ss_conf 75424675310452101776586523688886016759980764220----------16654345022116666887455
Q gi|254780859|r 488 GFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQSAD 557 (700)
Q Consensus 488 G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~AD 557 (700)
.... . ...| ..++++|++|.||+. .+++.+|+|++|.|+|+||++||
T Consensus 320 ~~~~--~----------~~~p-----------~~ik~l~v~g~NP~~~~p~~~~~~~al~~ldfvVv~d~~~teTa~~AD 376 (454)
T cd02755 320 LYYA--G----------SAKP-----------YPIKALFIYRTNPFHSMPDRARLIKALKNLDLVVAIDILPSDTALYAD 376 (454)
T ss_pred CCCC--C----------CCCC-----------CCEEEEEEECCCHHHHCCCHHHHHHHHHCCCEEEEEECCCCHHHHHCC
T ss_conf 4677--7----------7888-----------871799994889898580899999998689929998578884678518
Q ss_pred EEECCCCCCCCCCEEEEECC---EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 77047862024720882088---674204432885557407999999999807799687989999999997
Q gi|254780859|r 558 VILPGAAYTEKSGLWVNTEG---RVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSH 625 (700)
Q Consensus 558 VVLP~a~~~Ek~Gtf~N~Eg---RvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~ 625 (700)
||||+++|+||+|+|+|.+| ++|..+|+++|+||+|+||||+.+||+|||+...++..-|+++++++.
T Consensus 377 vVLPaat~~Ek~g~~~~~~~~~~~~~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~sg~~e~~s~~~~~ 447 (454)
T cd02755 377 VILPEATYLERDEPFSDKGGPAPAVATRQRAIEPLYDTRPGWDILKELARRLGLFGTPSGKIELYSPILAK 447 (454)
T ss_pred EEECCCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99668885414761104788712698604566998456659999999999718999999725651189996
No 24
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=533.64 Aligned_cols=377 Identities=19% Similarity=0.163 Sum_probs=304.2
Q ss_pred EEEEECCCC-CCCCCEEEEECCCCEEEEEECCCCCCCCCCE-------ECCCCCCCCCHH-HHCCCCHHHEEC----CCC
Q ss_conf 352201211-6886436675159999885247888777741-------135542210000-000011011002----222
Q gi|254780859|r 228 TKTDSIDVM-DALGSAIRIDARGCEVMRILPRINESINEEW-------ISDKTRFIWDGL-KVQRLDCPYARI----NGR 294 (700)
Q Consensus 228 ~~~~SvC~~-C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~-------lC~KGRf~~d~~-~~dRL~~PliR~----~g~ 294 (700)
|.|+|+|++ |++||+|.++|+||+|+||+|++++|.+++. +|.||+++++.+ +|+||++||+|+ +|+
T Consensus 2 k~v~s~C~~~C~~~C~i~v~V~dG~vv~v~~~~~~P~~~~~~p~~~gr~C~KG~~~~~~~y~pdRl~~PL~R~g~RG~g~ 81 (461)
T cd02750 2 KVVRSTHGVNCTGSCSWNVYVKNGIVTREEQATDYPETPPDLPDYNPRGCQRGASFSWYLYSPDRVKYPLKRVGARGEGK 81 (461)
T ss_pred CEEECCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHCCCEEECCCCCCCC
T ss_conf 65941589998578986999999999999757878888887766677868673442876459644039866367788897
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCEEE-----EECCCCCCHHHH-HHHHHHHHCCCCCEECCCCCCCCCHHHH--CCCCCC
Q ss_conf 02324145668887520134453147-----850432323555-4788986368772420233444664340--125467
Q gi|254780859|r 295 LKPVSWDYALKAIKSAVLSSDVKLGA-----VVGDLSSVEEIY-ALKLLMQSLGCENFDCRQNGEYLDPSYG--RASYIF 366 (700)
Q Consensus 295 ~~~iSWdeAl~~ia~~L~~~~~~~g~-----~~g~~~t~Ee~y-~~k~l~~~lGt~nid~~~~~~~~~~~~~--~~~~~~ 366 (700)
|++|||||||++||++|+++.++||. +.+...+.+..| ..++|++.+|+.+.+.+...+....... .+....
T Consensus 82 f~~iSWDEAld~IA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~G~~~~ 161 (461)
T cd02750 82 WKRISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQTD 161 (461)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEECCCC
T ss_conf 78975999999999999999996199649996478640488899999999984897678865767488999988327888
Q ss_pred CCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHH---HHHCCCCCHH--------------
Q ss_conf 78787740185799973853225731025778999759970661685012233---4430489867--------------
Q gi|254780859|r 367 NPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRY---KYEHLGNGSE-------------- 429 (700)
Q Consensus 367 ~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~---~~~~l~~~~e-------------- 429 (700)
..+..|+++||+||+||+||.+++|....++++|.++|++.|++++.....+. .+..+.++++
T Consensus 162 ~~~~~D~~~a~~il~~G~N~~~~~~~~~~~i~~ar~~GaklivIDPr~t~ta~~AD~~l~irPGTD~aL~la~~~~ii~e 241 (461)
T cd02750 162 VPESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALALAMAHVIIKE 241 (461)
T ss_pred CCCHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 89877884397899956787883645469999999779979992699987899727046879996199999999999876
Q ss_pred ------HHHHHH---------------CCC-----CHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ------888882---------------687-----788999872353102354433210474698989899988741058
Q gi|254780859|r 430 ------ALADLV---------------SGQ-----HPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGIS 483 (700)
Q Consensus 430 ------~l~~~~---------------~g~-----~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig 483 (700)
++.+++ .|. ..+++.+++++++++++|+|+.++.+|.+..+++..|++++|++|
T Consensus 242 ~~~D~~fv~~~t~~~~~~ytpe~aa~itGv~~~~I~~lA~~~a~~~~~~i~~g~G~~~~~~g~~~~~a~~~L~~ltGnig 321 (461)
T cd02750 242 KLYDEDYLKEYTDLPFLVYTPAWQEAITGVPRETVIRLAREFATNGRSMIIVGAGINHWYHGDLCYRALILLLALTGNEG 321 (461)
T ss_pred CCCCHHHHHHHHCCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88189999987385332199999998879599999999999986799389817253411228999999999999855899
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH------------CCCCCCEEEHHHHHHHH
Q ss_conf 533475424675310452101776586523688886016759980764220------------16654345022116666
Q gi|254780859|r 484 DSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELD------------FSDKQALTVYIGSHGDR 551 (700)
Q Consensus 484 ~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~------------~~~~~~fvV~~d~~~t~ 551 (700)
++|+|+..+. ++++++++.+.||+. ..++.+|+|++|.|+|+
T Consensus 322 ~~Ggg~~~~~--------------------------G~~k~~~~~~~nP~~~~~~~~~~~~~~~~~kldf~Vv~D~~~te 375 (461)
T cd02750 322 KNGGGWAHYV--------------------------GQPRVLFVWRGNLFGSSGKGHEYFEDAPEGKLDLIVDLDFRMDS 375 (461)
T ss_pred CCCCCCCCCC--------------------------CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 9998261026--------------------------87508999576812358789999988664799989996278884
Q ss_pred HHHHCCEEECCCCCCCC-CCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHH
Q ss_conf 88745577047862024-72088208867420443288555740799999999980779-----9687989999999997
Q gi|254780859|r 552 GAQSADVILPGAAYTEK-SGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS-----LPFSSLSQLRSHLYSH 625 (700)
Q Consensus 552 tA~~ADVVLP~a~~~Ek-~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~-----~~~~~~~ei~~ei~~~ 625 (700)
||++||||||+++|+|| +++++|.++++|..+|||+|+||+|+||||+.+||+|||++ ..|.+.+|++.||+..
T Consensus 376 TA~~ADvVLPa~t~~Er~d~~~~~~~~~v~~~~~av~P~gear~D~~I~~~LA~rlg~~~~~~~~~~~~~~~~~~e~~~~ 455 (461)
T cd02750 376 TALYSDIVLPAATWYEKHDLSTTDMHPFIHPFSPAVDPLWEAKSDWEIFKALAKKVPWRTLTGRQQFYLDHDWFLELGET 455 (461)
T ss_pred HHHHCCEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 27648899758987713880553698669984146589744666999999999856999887740228889999999986
Q ss_pred CCCCC
Q ss_conf 81110
Q gi|254780859|r 626 HPHFM 630 (700)
Q Consensus 626 ~P~~~ 630 (700)
+|.|.
T Consensus 456 ~p~~~ 460 (461)
T cd02750 456 LPTYK 460 (461)
T ss_pred CCCCC
T ss_conf 78878
No 25
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=538.36 Aligned_cols=378 Identities=15% Similarity=0.186 Sum_probs=290.2
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 2012116886436675159999885247888777741135542210000-000011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
+|+|++|++||+|.++++||+|+||+|++++|+|+|+||+||+++++.+ ++|||++||+|++|+|++|||||||++||+
T Consensus 1 KT~C~~C~~~Cgi~v~v~dg~vv~v~g~~~~p~n~G~lC~KG~~~~~~~~~pdRL~~PL~R~~g~~~~iSWdEAl~~ia~ 80 (539)
T cd02762 1 KRACILCEANCGLVVTVEDGRVASIRGDPDDPLSKGYICPKAAALGDYQNDPDRLRTPMRRRGGSFEEIDWDEAFDEIAE 80 (539)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCCCHHCCCEEECCCEEEECCHHHHHHHHHH
T ss_conf 97488851689869999999999997589999778378970320378757985403881861990488269999999999
Q ss_pred HHCCCCCCEE-----EEECC-CCCCHHHHHH-HHHHHHCCCCCEECCCCCCCCCHHHHC---CCCCCCCCHHHHHCCCEE
Q ss_conf 2013445314-----78504-3232355547-889863687724202334446643401---254677878774018579
Q gi|254780859|r 310 AVLSSDVKLG-----AVVGD-LSSVEEIYAL-KLLMQSLGCENFDCRQNGEYLDPSYGR---ASYIFNPTIQGIEEADAM 379 (700)
Q Consensus 310 ~L~~~~~~~g-----~~~g~-~~t~Ee~y~~-k~l~~~lGt~nid~~~~~~~~~~~~~~---~~~~~~~~i~die~ad~i 379 (700)
+|+++++++| .+.|+ ..+.+..+++ +.|++.+|++|+++....+........ .......++.|++++|+|
T Consensus 81 kl~~i~~~~G~~av~~~~g~~~~~~~~~~~~~~~~~~~~gt~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~a~~i 160 (539)
T cd02762 81 RLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSAATADQKPGHFWSGLMFGHPGLHPVPDIDRTDYL 160 (539)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEE
T ss_conf 99999997298629998248526089999999999984588887785067788999999986389878887689629899
Q ss_pred EEECCCCCCCC------CCHHHHHHHHHHCCCCEEECCCCCHHHH---HHHHCCCCCH----------------------
Q ss_conf 99738532257------3102577899975997066168501223---3443048986----------------------
Q gi|254780859|r 380 LIIGSNPRLEA------AVLNARIRKRWRRGNFPIAVIGDVGELR---YKYEHLGNGS---------------------- 428 (700)
Q Consensus 380 lliG~Np~~~~------Pvl~~rirka~~~g~~~I~vi~~~~~l~---~~~~~l~~~~---------------------- 428 (700)
|+||+||.++| |.+..+++++.++|++.|++++....++ ..+..+.+++
T Consensus 161 l~~G~Np~~s~~~~~~~p~~~~~~~~a~~~GaklIviDPr~t~ta~~Ad~~l~irPGtD~al~la~~~~ii~~gl~D~~f 240 (539)
T cd02762 161 LILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLFVRPGTDAWLLAAMLAVLLAEGLTDRRF 240 (539)
T ss_pred EEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99888679957874334799999999997799899985868848998756740588846999999987766510005777
Q ss_pred --------HHHHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf --------78888826877----------------889998723531023544332104746989898999887410585
Q gi|254780859|r 429 --------EALADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISD 484 (700)
Q Consensus 429 --------e~l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~ 484 (700)
+.+++.+..++ ++++.+++++++++++++|+.++.+|....+++..|.+++|++++
T Consensus 241 l~~~t~G~e~l~~~~~~~tpe~~a~itGV~~~~I~~~A~~~a~~~~~~i~~~~G~~~~~~g~~~~~a~~~L~~ltG~~g~ 320 (539)
T cd02762 241 LAEHCDGLDEVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQTQLFGTLCSWLVKLLNLLTGNLDR 320 (539)
T ss_pred HHHHCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77641549999999860898888765299889999999998538978999666666334179999999999999467999
Q ss_pred CCCCCCCCCCCCCCCCCHHC------------CCCCCCCC-C---CHHHHH-----HCCCEEEECCCCHHH---------
Q ss_conf 33475424675310452101------------77658652-3---688886-----016759980764220---------
Q gi|254780859|r 485 SWNGFAVLHTVASRVGALDL------------GFVPADDT-I---NAMNIL-----DKTDIVFLLGADELD--------- 534 (700)
Q Consensus 485 ~g~G~~~L~~~~n~~Ga~d~------------g~~P~~~~-~---~~~~~~-----~~~~~l~~~g~d~l~--------- 534 (700)
+|++..+.... +..+.... +..|...+ . ...+++ .+++++|++|.||+.
T Consensus 321 pGg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~~~~~ikal~v~g~NP~~s~p~~~~v~ 399 (539)
T cd02762 321 PGGAMFTTPAL-DLVGQTSGRTIGRGEWRSRVSGLPEIAGELPVNVLAEEILTDGPGRIRAMIVVAGNPVLSAPDGARLE 399 (539)
T ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCHHHHH
T ss_conf 98746787755-45677787654433333532237144244746789999853788982899996888786264899999
Q ss_pred -CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCC-CEEEEEC---CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf -16654345022116666887455770478620247-2088208---867420443288555740799999999980779
Q gi|254780859|r 535 -FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKS-GLWVNTE---GRVQMGMRAIFPPGDAKEDWEIICALADELKCS 609 (700)
Q Consensus 535 -~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~-Gtf~N~E---gRvQ~~~~av~p~geak~dw~Il~~La~~LG~~ 609 (700)
.+.+.+|+|++|.|+||||++||||||+++|+||+ |+|+|++ +++|..+|+++|+||+|+||||+++||++||..
T Consensus 400 ~aL~~ldf~Vv~D~f~teTa~~ADvVLPaat~~Ek~~~~~~~~~~~~~~~~~~~~~i~P~gear~d~eI~~~La~~l~~~ 479 (539)
T cd02762 400 AALGGLEFMVSVDVYMTETTRHADYILPPASQLEKPHATFFNLEFPRNAFRYRRPLFPPPPGTLPEWEILARLVEALDAV 479 (539)
T ss_pred HHHHCCCEEEEEECCCCHHHHHCCEEECCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99858994999848888204117899689972212771675445565059870345699866871999999999973740
No 26
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=532.64 Aligned_cols=352 Identities=19% Similarity=0.212 Sum_probs=285.5
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEECC----CCEEECCHHHHHH
Q ss_conf 2012116886436675159999885247888777741135542210000-0000110110022----2202324145668
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARIN----GRLKPVSWDYALK 305 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~----g~~~~iSWdeAl~ 305 (700)
+|||++|++||++.++|+||+|+||+|++++|+|+|+||+|||++++++ ++|||++||+|++ |+|++|||||||+
T Consensus 1 ktvC~~C~~gC~~~~~v~dg~v~~v~g~~~~p~n~g~lC~kG~~~~~~~y~pdRl~~PL~R~g~rG~g~f~~iSWdEAld 80 (477)
T cd02759 1 KGTCPGCHSGCGVLVYVKDGKLVKVEGDPNHPTNKGRLCMRGLAAPEIVYHPDRLLYPLKRVGERGENKWERISWDEALD 80 (477)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCCCHHCCCEEECCCCCCCCEEEECHHHHHH
T ss_conf 96693975788879999999999987689999888744773551287745963413886525888889868815999999
Q ss_pred HHHHHHCCCCCCEEE-----E-ECCCCCCHHHHHH-HHHHHHCCCCCEECCCCCCCCCHHHHCC---CCCCCCCHHHHHC
Q ss_conf 887520134453147-----8-5043232355547-8898636877242023344466434012---5467787877401
Q gi|254780859|r 306 AIKSAVLSSDVKLGA-----V-VGDLSSVEEIYAL-KLLMQSLGCENFDCRQNGEYLDPSYGRA---SYIFNPTIQGIEE 375 (700)
Q Consensus 306 ~ia~~L~~~~~~~g~-----~-~g~~~t~Ee~y~~-k~l~~~lGt~nid~~~~~~~~~~~~~~~---~~~~~~~i~die~ 375 (700)
+||++|+++++++|. + .+++.++++.+++ +++++.+|++|++.+.+.|......+.. ......+..|+++
T Consensus 81 ~iA~kl~~i~~~~G~~~i~~~~g~g~~~~~~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~D~~~ 160 (477)
T cd02759 81 EIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGFGLGYDEPDWEN 160 (477)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999998739654899836888548999999999998479986368864004689888776226687888356864
Q ss_pred CCEEEEECCCCCCCCCCHH-HHHHHHHHCCCCEEECCCCCHHHHHH---HHCCC--------------------------
Q ss_conf 8579997385322573102-57789997599706616850122334---43048--------------------------
Q gi|254780859|r 376 ADAMLIIGSNPRLEAAVLN-ARIRKRWRRGNFPIAVIGDVGELRYK---YEHLG-------------------------- 425 (700)
Q Consensus 376 ad~illiG~Np~~~~Pvl~-~rirka~~~g~~~I~vi~~~~~l~~~---~~~l~-------------------------- 425 (700)
||+||+||+||.+++|++. .+++++.++|++.|++++....++.. +..+.
T Consensus 161 a~~il~~G~Np~~~~~~~~~~~~~~a~~~GaklividPr~t~ta~~Ad~~l~i~PGTD~AL~lai~~~ii~~~~~D~~fi 240 (477)
T cd02759 161 PECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLPIRPGTDAALALGMLNVIINEGLYDKDFV 240 (477)
T ss_pred CCEEEEECCCHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 98999986876773873999999999976995999826888268861532421777629988666668876687580456
Q ss_pred ----CCHHHHHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf ----98678888826877----------------8899987235310235443321047469898989998874105853
Q gi|254780859|r 426 ----NGSEALADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDS 485 (700)
Q Consensus 426 ----~~~e~l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~ 485 (700)
.+++.+++.+..++ .+++.+++++++++.+|.|+.++.+|.++.+++..|++++|+++++
T Consensus 241 ~~~t~gfd~l~~~~~~~tpe~aa~itGv~~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ltG~~~~p 320 (477)
T cd02759 241 ENWCYGFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAKPACIQWGLAIDQQKNGTQTSRAIAILRAITGNLDVP 320 (477)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 63356299999853348977766663998999999999997179789995722313511899999999999980899998
Q ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHH
Q ss_conf 3475424675310452101776586523688886016759980764220----------166543450221166668874
Q gi|254780859|r 486 WNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQS 555 (700)
Q Consensus 486 g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~ 555 (700)
|.++. .| ..++++|++|.||+. ++++.+|+|++|+|+|+||++
T Consensus 321 Gg~~~----------------~p-----------~pik~~~v~g~NP~~~~p~~~~~~~al~kldfvVv~D~~~teTa~~ 373 (477)
T cd02759 321 GGNLL----------------IP-----------YPVKMLIVFGTNPLASYADTAPVLEALKALDFIVVVDLFMTPTAML 373 (477)
T ss_pred CCCCC----------------CC-----------CCCEEEEEECCCHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 98757----------------89-----------9866999958887761757999999986799599973667822522
Q ss_pred CCEEECCCCCCCCCCEEEEECCE--EEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 55770478620247208820886--7420443288555740799999999980779
Q gi|254780859|r 556 ADVILPGAAYTEKSGLWVNTEGR--VQMGMRAIFPPGDAKEDWEIICALADELKCS 609 (700)
Q Consensus 556 ADVVLP~a~~~Ek~Gtf~N~EgR--vQ~~~~av~p~geak~dw~Il~~La~~LG~~ 609 (700)
||||||+++|+|++|+++|.++| +|..+|+++|+||||+||||+++||++||++
T Consensus 374 ADvVLPa~t~~E~~~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rlG~~ 429 (477)
T cd02759 374 ADIVLPVAMSLERPGLRGGFEAENFVQLRQKAVEPYGEAKSDYEIVLELGKRLGPE 429 (477)
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 66897689855137650567897448986557598624666999999999983995
No 27
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=524.00 Aligned_cols=403 Identities=18% Similarity=0.209 Sum_probs=309.7
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEC------------------------------------------CCCEEEE--EECCC
Q ss_conf 430235220121168864366751------------------------------------------5999988--52478
Q gi|254780859|r 224 SWELTKTDSIDVMDALGSAIRIDA------------------------------------------RGCEVMR--ILPRI 259 (700)
Q Consensus 224 pwel~~~~SvC~~C~~GC~i~v~v------------------------------------------~~g~i~r--v~~~~ 259 (700)
|-+-+++.++|.||.|||+..|++ ++|+-+. |.|++
T Consensus 7 p~~a~~~~~~C~~c~vgcgy~vy~wp~~~~gg~~~~~na~g~d~~~q~~~~~~~~~~~~m~~~~~~~~g~~~~i~i~Pdk 86 (676)
T cd02756 7 PVNAERYNVTCHFCIVGCGYHVYVWPVGEEGGPSPGQNAIGYDLVDQVPPLNLQWYPKTMHYVVVTQDGREVYIVIVPDK 86 (676)
T ss_pred CCCCCEEEEECCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEECCCCCEEEEEECCCC
T ss_conf 98865444346841546165565378987689784325434314345787542344721102113578857668965477
Q ss_pred CCCCCCCEECCCCCCCCCHHH-H------CCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCCCEEE----E------E
Q ss_conf 887777411355422100000-0------001101100222202324145668887520134453147----8------5
Q gi|254780859|r 260 NESINEEWISDKTRFIWDGLK-V------QRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVKLGA----V------V 322 (700)
Q Consensus 260 ~~~vN~g~lC~KGRf~~d~~~-~------dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~~~g~----~------~ 322 (700)
+.++|+|..|.||.+..++++ + +||++||+|++|+|+++||||||+++|++++++.+++|. + +
T Consensus 87 ~~~vN~G~~s~rG~~~a~~~~sp~~~~~~~RLt~Plir~~g~~~~~sWdeAld~vA~~~k~i~~~~Gpd~~~~~~~~dhG 166 (676)
T cd02756 87 ECPVNSGNYSTRGGTNAERIWSPDNRVGETRLTTPLVRRGGQLQPTTWDDAIDLVARVIKGILDKDGNDDAVFASRFDHG 166 (676)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 68766886564311157763088886244450156362689765657999999999999999987498656899973157
Q ss_pred CCCCCCHHHHHHHHHH-HHCCCCCEECCCCCCCCCHHHHC---CCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHH--
Q ss_conf 0432323555478898-63687724202334446643401---25467787877401857999738532257310257--
Q gi|254780859|r 323 GDLSSVEEIYALKLLM-QSLGCENFDCRQNGEYLDPSYGR---ASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNAR-- 396 (700)
Q Consensus 323 g~~~t~Ee~y~~k~l~-~~lGt~nid~~~~~~~~~~~~~~---~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~r-- 396 (700)
|+..++|+.|+++||+ ..+||+|+|++++.|+.+...+. +....+++|+|++.||+|++||+|++|.|||++++
T Consensus 167 s~~~~~Ee~y~~~KL~~~~~gTnnid~~sRlC~aSav~g~r~~G~g~~~~syeD~e~AD~i~iiGsN~ae~hpvlf~~h~ 246 (676)
T cd02756 167 GGGGGFENNWGVGKFFFMALQTPFVRIHNRPAYNSEVHATREMGVGELNNSYEDARLADTIVLWGNNPYETQTVYFLNHW 246 (676)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCEEEEECCCHHHCCCHHHHHHH
T ss_conf 76511799999999998725887655766351124668888608999998876687689899976672430712776521
Q ss_pred ---HH-------HHHH------CCCCEEECCCCCHHHHHHHH---------C--CCCCHHH-----HH--------HH--
Q ss_conf ---78-------9997------59970661685012233443---------0--4898678-----88--------88--
Q gi|254780859|r 397 ---IR-------KRWR------RGNFPIAVIGDVGELRYKYE---------H--LGNGSEA-----LA--------DL-- 434 (700)
Q Consensus 397 ---ir-------ka~~------~g~~~I~vi~~~~~l~~~~~---------~--l~~~~e~-----l~--------~~-- 434 (700)
+| |+.. .+++.|+++++++......+ | +.+|++. +. ++
T Consensus 247 ~~~lrga~~~~k~~~~~~~~~~~~~kiIVvDPRrT~ta~~Ad~~~g~~~vLhL~i~PGTD~aL~n~l~~~i~e~~~~~l~ 326 (676)
T cd02756 247 LPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAEAAAGKDRVLHLQVNPGTDTALANAIARYIYESLDEVLA 326 (676)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 04432356888776403566688853899918987079988651366543576379995199999999999976177999
Q ss_pred ----HCCCC-----HHHHHHHHCC------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-C
Q ss_conf ----26877-----8899987235------310235443321047469898989998874105853347542467531-0
Q gi|254780859|r 435 ----VSGQH-----PFFKKLQEAT------RPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVAS-R 498 (700)
Q Consensus 435 ----~~g~~-----~~~~~l~~a~------~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n-~ 498 (700)
+.|.. ..++.+.+++ +.+++|.+|+.+|.+|++...+|++|+++||++|+||.|.++|+|+.+ .
T Consensus 327 ~a~~itGv~~~~i~~aA~~~a~~k~~g~~~r~~~~~~mGi~q~~~Gtd~v~AIiNL~L~TGnIGRpGtG~n~mgG~q~G~ 406 (676)
T cd02756 327 EAEQITGVPRAQIEKAADWIAKPKEGGYRKRVMFEYEKGIIWGNDNYRPIYSLVNLAIITGNIGRPGTGCVRQGGHQEGY 406 (676)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99987598999999999998640013423579999863000046570899999999998588988897867877742456
Q ss_pred CCCHHCCCCCCCCCCCHHHH-----HHCCCEEEECCCCHHHCCCC-----------------------------------
Q ss_conf 45210177658652368888-----60167599807642201665-----------------------------------
Q gi|254780859|r 499 VGALDLGFVPADDTINAMNI-----LDKTDIVFLLGADELDFSDK----------------------------------- 538 (700)
Q Consensus 499 ~Ga~d~g~~P~~~~~~~~~~-----~~~~~~l~~~g~d~l~~~~~----------------------------------- 538 (700)
++..+++..+.........+ .++.+++|++|.||......
T Consensus 407 ~~~~~~g~~~~~~~~~~~~vd~~l~~g~~k~~wv~g~nP~~s~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (676)
T cd02756 407 VRPPPPPPPWYPQYQYAPYIDQLLISGKGKVLWVIGCDPYKTTPNAQRLRETINHRSKLVTDAVEAALYAGTYDREAMVC 486 (676)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 68777888776666554779999860773389997168766787579999999865578999985266677722677889
Q ss_pred ---------CCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEE-ECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-
Q ss_conf ---------434502211666688745577047862024720882-088674204432885557407999999999807-
Q gi|254780859|r 539 ---------QALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVN-TEGRVQMGMRAIFPPGDAKEDWEIICALADELK- 607 (700)
Q Consensus 539 ---------~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N-~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG- 607 (700)
..|+|+||.|+||||++||||||+++|.||+|||+| +|||+|+.+++++|||+|||||||+.++|++|+
T Consensus 487 ~~~~~~~~~~LFvVVQDIf~TETA~~Adv~LPaa~w~Ek~gt~~n~seRr~~~~~~~~~ppg~a~~Dw~I~~~ia~r~~~ 566 (676)
T cd02756 487 LIGDAIQPGGLFIVVQDIYPTKLAEDAHVILPAAANGEMNETSMNGHERRLRLYEKFMDPPGEAMPDWWIAAMIANRIYE 566 (676)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCHHHCCEEECCCCCCCCCCEEECCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98865404871799985045732443538943676543577375254422212223039963354769999999999998
Q ss_pred ---------------CCCCCCCHHHHHHHHHHHC
Q ss_conf ---------------7996879899999999978
Q gi|254780859|r 608 ---------------CSLPFSSLSQLRSHLYSHH 626 (700)
Q Consensus 608 ---------------~~~~~~~~~ei~~ei~~~~ 626 (700)
..|+|++.+|++.+-+..+
T Consensus 567 ~~~~~G~~~~~~~~~~gf~w~t~ed~F~e~~~~~ 600 (676)
T cd02756 567 LYQEEGKGGSAQYQFFGFIWKTEEDNFMDGSQEF 600 (676)
T ss_pred HHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 8753055433111114678799899999888874
No 28
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=0 Score=492.60 Aligned_cols=372 Identities=18% Similarity=0.167 Sum_probs=252.7
Q ss_pred ECC-CCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEEC----CCCEEECCHHHHHH
Q ss_conf 012-116886436675159999885247888777741135542210000-000011011002----22202324145668
Q gi|254780859|r 232 SID-VMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARI----NGRLKPVSWDYALK 305 (700)
Q Consensus 232 SvC-~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~----~g~~~~iSWdeAl~ 305 (700)
|+| ++|++||+|.++|+||+|+||+|+++++.|.|++|.|||++++.+ ++|||++||+|+ +|+|++|||||||+
T Consensus 2 t~C~~~C~~~C~l~~~v~dg~vv~v~~~~~~~~~~g~~C~KG~~~~~~~~~pdRl~~Pl~R~g~rG~g~f~~iSWdeAl~ 81 (567)
T cd02765 2 TACPPNCGGRCPLKCHVRDGKIVKVEPNEWPDKTYKRGCTRGLSHLQRVYSPDRLKYPMKRVGERGEGKFERITWDEALD 81 (567)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEECHHHHHH
T ss_conf 77989987898869999999999998988999998706865340288756986313882878889999889914999999
Q ss_pred HHHHHHCCCCCCEEE--EECCCCCCHHHHHH-HHHHHHCCCCCEECCCCC------CCCCHHHHCCCCCCCCCHHHHHCC
Q ss_conf 887520134453147--85043232355547-889863687724202334------446643401254677878774018
Q gi|254780859|r 306 AIKSAVLSSDVKLGA--VVGDLSSVEEIYAL-KLLMQSLGCENFDCRQNG------EYLDPSYGRASYIFNPTIQGIEEA 376 (700)
Q Consensus 306 ~ia~~L~~~~~~~g~--~~g~~~t~Ee~y~~-k~l~~~lGt~nid~~~~~------~~~~~~~~~~~~~~~~~i~die~a 376 (700)
+||++|++++++||. ++....+. ..+.+ ..++..+++.+.+..... .......+........++.|+++|
T Consensus 82 ~iA~kl~~i~~~~G~~si~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~D~~~a 160 (567)
T cd02765 82 TIADKLTEAKREYGGKSILWMSSSG-DGAILSYLRLALLGGGLQDALTYGIDTGVGQGFNRVTGGGFMPPTNEITDWVNA 160 (567)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEECCCCCCCCCHHHHHHC
T ss_conf 9999999999986995699990484-688999999999628787777767553667654642523667788885678639
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHH---HHHCCCCCHHH--------------------HHH
Q ss_conf 5799973853225731025778999759970661685012233---44304898678--------------------888
Q gi|254780859|r 377 DAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRY---KYEHLGNGSEA--------------------LAD 433 (700)
Q Consensus 377 d~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~---~~~~l~~~~e~--------------------l~~ 433 (700)
|+||+||+||.++||+...++++|.++|++.|+++++...++. .+..+.++++. +++
T Consensus 161 ~~il~~G~Np~~~~~~~~~~~~~ak~~G~klIvIDPr~t~ta~~AD~~l~irPGTD~AL~lam~~~ii~e~l~D~~Fi~~ 240 (567)
T cd02765 161 KTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPIRPGTDPALALGMINYILEHNWYDEAFLKS 240 (567)
T ss_pred CEEEEECCCCHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 89999998824636107999999986698399993852608998645437899958999999999999879837899998
Q ss_pred HHCCCCHHHH----------------------------------------------------------------------
Q ss_conf 8268778899----------------------------------------------------------------------
Q gi|254780859|r 434 LVSGQHPFFK---------------------------------------------------------------------- 443 (700)
Q Consensus 434 ~~~g~~~~~~---------------------------------------------------------------------- 443 (700)
.+.+...+.+
T Consensus 241 ~t~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~g~~~~~~~~~l~~~~~~~~~~ 320 (567)
T cd02765 241 NTSAPFLVREDNGTLLRQADVTATPAEDGYVVWDTNSDSPEPVAATNINPALEGEYTINGVKVHTVLTALREQAASYPPK 320 (567)
T ss_pred HCCCHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEHHHCCCCHHHHCCHHCCCEEEEEHHHHHHHHHHCCCHH
T ss_conf 46616655310001322221024421556888766327602145316368762302016534333799999876038999
Q ss_pred ------------------HHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCC
Q ss_conf ------------------98723531023544332104746989898999887410585334754246753104521017
Q gi|254780859|r 444 ------------------KLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLG 505 (700)
Q Consensus 444 ------------------~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g 505 (700)
.+...+...+..+.|..++.++....+++..+..++|+++++|+|
T Consensus 321 ~~~~i~g~~~~~i~~~a~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~l~~l~g~~g~~g~~----------------- 383 (567)
T cd02765 321 AAAEICGLEEAIIETLAEWYATGKPSGIWGFGGVDRYYHSHVFGRTAAILAALTGNIGRVGGG----------------- 383 (567)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCC-----------------
T ss_conf 999874986789999999982089825733677653006632568999999873778884775-----------------
Q ss_pred CCCCCCCCCHHHHHHCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEE
Q ss_conf 76586523688886016759980764220----------16654345022116666887455770478620247208820
Q gi|254780859|r 506 FVPADDTINAMNILDKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNT 575 (700)
Q Consensus 506 ~~P~~~~~~~~~~~~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~ 575 (700)
.++++++|++|.||+. ++++.+|+|++|.|+|+||++||||||+++|+||+|+++|.
T Consensus 384 -------------~g~ik~l~~~g~Np~~s~pd~~~~~~al~kldfvVv~D~~~teTa~~ADvVLPaat~~Er~~~~~~~ 450 (567)
T cd02765 384 -------------VGQIKFMYFMGSNFLGNQPDRDRWLKVMKNLDFIVVVDIFHTPTVRYADIVLPAAHWFEVEDLLVRY 450 (567)
T ss_pred -------------CCCEEEEEEECCCHHHCCCCHHHHHHHHHCCCCEEEEECEECHHHHHCCEEECCCCCCEECCCEECC
T ss_conf -------------5514479997788586370689999998614828985046376577568762465401256734204
Q ss_pred CCE--EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCHHHH-HHHHHHHCCCCCCCCC
Q ss_conf 886--7420443288555740799999999980779968-798999-9999997811105542
Q gi|254780859|r 576 EGR--VQMGMRAIFPPGDAKEDWEIICALADELKCSLPF-SSLSQL-RSHLYSHHPHFMQLDE 634 (700)
Q Consensus 576 EgR--vQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~-~~~~ei-~~ei~~~~P~~~~~~~ 634 (700)
+++ +|..+|+|+|+||+|+||+|+++||+|||++..| .+.+|. +..+....|.+.+++.
T Consensus 451 ~~~~~v~~~~~~v~P~gear~d~~I~~~lA~rlG~~~~f~~~~~~~~~~~~~~~~~~~~git~ 513 (567)
T cd02765 451 TTHPHVLLQQKAIEPLFESKSDFEIEKGLAERLGLGDYFPKTPEDYVRAFMNSDDPALDGITW 513 (567)
T ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCH
T ss_conf 896079980557699633577999999999970996668999999999997447865479989
No 29
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=489.79 Aligned_cols=392 Identities=17% Similarity=0.200 Sum_probs=287.6
Q ss_pred ECCCC-CCCCCEEEEECCCCEEEEEECCCCCCCCCCE----ECCCCCCCCCHH-HHCCCCHHHEECC----CCEEECCHH
Q ss_conf 01211-6886436675159999885247888777741----135542210000-0000110110022----220232414
Q gi|254780859|r 232 SIDVM-DALGSAIRIDARGCEVMRILPRINESINEEW----ISDKTRFIWDGL-KVQRLDCPYARIN----GRLKPVSWD 301 (700)
Q Consensus 232 SvC~~-C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~----lC~KGRf~~d~~-~~dRL~~PliR~~----g~~~~iSWd 301 (700)
|+|++ |+.+|+|.++|+||+|+||+|++++|.|.|. +|.||+++.+.+ +||||++||+|++ |+|++||||
T Consensus 2 s~C~~nC~~~C~i~v~V~dG~v~kv~g~~~~p~~~g~~~~r~C~KG~~~~~~~y~pdRl~~PLkR~g~rG~g~f~~ISWd 81 (617)
T cd02770 2 SACTVNCGGRCPLKAHVKDGVITRIETDDTGDDDPGFHQIRACLRGRSQRKRVYNPDRLKYPMKRVGKRGEGKFVRISWD 81 (617)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHCCCEEECCCCCCCCEEEECHH
T ss_conf 63079988898869999999999998479998999988868986835338876597540388161799889987894699
Q ss_pred HHHHHHHHHHCCCCCCEEE--E---ECCCCCCHHHH---HHHHHHHHCCCCCEECCCCCCCCCHHHH----CCCCCCCCC
Q ss_conf 5668887520134453147--8---50432323555---4788986368772420233444664340----125467787
Q gi|254780859|r 302 YALKAIKSAVLSSDVKLGA--V---VGDLSSVEEIY---ALKLLMQSLGCENFDCRQNGEYLDPSYG----RASYIFNPT 369 (700)
Q Consensus 302 eAl~~ia~~L~~~~~~~g~--~---~g~~~t~Ee~y---~~k~l~~~lGt~nid~~~~~~~~~~~~~----~~~~~~~~~ 369 (700)
|||++||++|+++++++|. + .|.....+..+ .+.+|++.+|+ +++++.+.+......+ .+......+
T Consensus 82 EAl~~IA~kl~~i~~~~G~~si~~~~g~g~~~~~~~~~~~~~r~~~~~g~-~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 160 (617)
T cd02770 82 EALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGG-YLNYYGTYSWAQITTATPYTYGAAASGSS 160 (617)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHEECCCCCCC
T ss_conf 99999999999999874964599953588766305689999999997089-87899887377899999987618888898
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHH---HHHHHHHHCCCCEEECCCCCHHHH----HHHHCCCCCHH-------------
Q ss_conf 8774018579997385322573102---577899975997066168501223----34430489867-------------
Q gi|254780859|r 370 IQGIEEADAMLIIGSNPRLEAAVLN---ARIRKRWRRGNFPIAVIGDVGELR----YKYEHLGNGSE------------- 429 (700)
Q Consensus 370 i~die~ad~illiG~Np~~~~Pvl~---~rirka~~~g~~~I~vi~~~~~l~----~~~~~l~~~~e------------- 429 (700)
+.|+++||+||+||+||.+++|... .++++|.++|++.|+++++....+ ..+..+.+|++
T Consensus 161 ~~D~~~a~~il~~G~Np~~t~~~~~~~~~~~~~ak~~GaklIvVDPr~t~ta~~~AD~wlpirPGTD~ALalam~~vii~ 240 (617)
T cd02770 161 LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIPIRPGTDAALVAAMAYVMIT 240 (617)
T ss_pred HHHHHHCCEEEEECCCHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 76897497999986888995788650789999998779869996798773577751785066788489999999999997
Q ss_pred -------HHHHHHCCCC---------------------------------------------HHHHHHHHCCCCHHHHHH
Q ss_conf -------8888826877---------------------------------------------889998723531023544
Q gi|254780859|r 430 -------ALADLVSGQH---------------------------------------------PFFKKLQEATRPLIIVGQ 457 (700)
Q Consensus 430 -------~l~~~~~g~~---------------------------------------------~~~~~l~~a~~~~ii~G~ 457 (700)
++++++.|++ ++++.++++++++|++|+
T Consensus 241 e~l~D~~Fv~~~t~Gfd~~~~~~~~~~~~~~~~~v~~~~~d~~~~TPE~aa~itGV~ae~I~~lAr~~a~~~~~~i~~g~ 320 (617)
T cd02770 241 ENLHDQAFLDRYCVGFDAEHLPEGAPPNESYKDYVLGTGYDGTPKTPEWASEITGVPAETIRRLAREIATTKPAAILQGW 320 (617)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 78746899998706757221312465467799997033434665899999998895999999999999724883899574
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH-HCCCCCCCCCCCHH--------------------
Q ss_conf 332104746989898999887410585334754246753104521-01776586523688--------------------
Q gi|254780859|r 458 GALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGAL-DLGFVPADDTINAM-------------------- 516 (700)
Q Consensus 458 g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~-d~g~~P~~~~~~~~-------------------- 516 (700)
|+.++.+|.++.+++..|++++||++++|+++....+..+..+.. ..+..|....+...
T Consensus 321 G~~~~~~g~~~~rai~~L~aLtGnig~pGg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (617)
T cd02770 321 GPQRHANGEQAARAIMMLAAMTGNVGIPGGNTGARPGGSAYNGAGLPAGKNPVKTSIPCFMWTDAIERGEEMTADDGGVK 400 (617)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 30103348999999999999976899989736777654456887766677864441242356566653454654322103
Q ss_pred ---HHHHCCCEEEECCCCHHH---------------CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECC-
Q ss_conf ---886016759980764220---------------1665434502211666688745577047862024720882088-
Q gi|254780859|r 517 ---NILDKTDIVFLLGADELD---------------FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEG- 577 (700)
Q Consensus 517 ---~~~~~~~~l~~~g~d~l~---------------~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~Eg- 577 (700)
.+...++++|+++.|++- ...+.+|+|++|.|+|+||++||||||+++|+||+++++|..+
T Consensus 401 ~~~~~~~~ik~l~~~~~n~l~~~~~~~~~~~~~~~~~~~kl~f~Vv~D~~~teTa~~ADiVLPa~t~~Er~d~~~~~~~~ 480 (617)
T cd02770 401 GADKLKSNIKMIWNYAGNTLINQHSDDNNTTRALLDDESKCEFIVVIDNFMTPSARYADILLPDTTELEREDIVLTSNAG 480 (617)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECEECCCHHHCCEEECCCCHHHCCCCCCCCCCC
T ss_conf 54335788589999078850247874048999998444159869997145663453172893588632137741367888
Q ss_pred ---EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHH
Q ss_conf ---67420443288555740799999999980779968---798999999999
Q gi|254780859|r 578 ---RVQMGMRAIFPPGDAKEDWEIICALADELKCSLPF---SSLSQLRSHLYS 624 (700)
Q Consensus 578 ---RvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~---~~~~ei~~ei~~ 624 (700)
.+|..+|||+|+||+|+||||+++||+|||++..| .+.+|..+++..
T Consensus 481 ~~~~~~~~~~ai~P~gEak~d~~I~~~La~rlG~~~~f~~~~~~~~~~~~~~~ 533 (617)
T cd02770 481 MMEYLIYSQKAIEPLYECKSDYEICAELAKRLGVEDQFTEGKTEQEWLEELYG 533 (617)
T ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 71289980667589645768999999999980996536899999999999999
No 30
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=491.60 Aligned_cols=355 Identities=15% Similarity=0.110 Sum_probs=278.2
Q ss_pred EEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEECC--------CCEEECCH
Q ss_conf 22012116886436675159999885247888777741135542210000-0000110110022--------22023241
Q gi|254780859|r 230 TDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARIN--------GRLKPVSW 300 (700)
Q Consensus 230 ~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~--------g~~~~iSW 300 (700)
++|+|.+|++||++.++|+||+|+||+|++++|+|+|++|.||+++++.+ +||||++||+|+| |+|++|||
T Consensus 2 v~T~C~~C~~~C~l~v~v~dG~v~~v~g~~~~p~~~G~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rg~~~~~g~f~~ISW 81 (523)
T cd02757 2 VPSTCQGCTAWCGLQAYVEDGRVTKVEGNPLHPGSRGRLCAKGHLGLQQVYDPDRILYPMKRTNPRKGRDVDPKFVPISW 81 (523)
T ss_pred CCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEECH
T ss_conf 87788998788988999999999998728989866770387677459985396632688484168888688998899389
Q ss_pred HHHHHHHHHHHCCCCCCEEE----EECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCC--CCCCCHHHHH
Q ss_conf 45668887520134453147----85043232355547889863687724202334446643401254--6778787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGA----VVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASY--IFNPTIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~----~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~--~~~~~i~die 374 (700)
||||++||++|+++++++|. +.++..++++.+++++|++.+|++|.+.+.+.|......+.... ....+-.|++
T Consensus 82 deAld~Ia~kl~~i~~~~g~~~i~~~~G~~~~~~~~~~~rf~~~~G~~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~D~~ 161 (523)
T cd02757 82 DEALDTIADKIRALRKENEPHKIMLHRGRYGHNNSILYGRFTKMIGSPNNISHSSVCAESEKFGRYYTEGGWDYNSYDYA 161 (523)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 99999999999999986799479998078873389999999998689854588620235999999981788888870131
Q ss_pred CCCEEEEECCCCCCCC-CC-HHHHHHHHHHCCCCEEECCCCCHHHHHH---HHCCCCCHH--------------------
Q ss_conf 1857999738532257-31-0257789997599706616850122334---430489867--------------------
Q gi|254780859|r 375 EADAMLIIGSNPRLEA-AV-LNARIRKRWRRGNFPIAVIGDVGELRYK---YEHLGNGSE-------------------- 429 (700)
Q Consensus 375 ~ad~illiG~Np~~~~-Pv-l~~rirka~~~g~~~I~vi~~~~~l~~~---~~~l~~~~e-------------------- 429 (700)
+|++||+||+||.+++ |+ ...++.++.++|++.|++++.....+.. +..+.++++
T Consensus 162 ~a~~iv~wG~Np~~t~~~~~~~~~~~~ak~~GaklIvIDPr~t~ta~~AD~wl~irPGTD~AL~la~~~~ii~e~l~D~~ 241 (523)
T cd02757 162 NAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVILTEGLWDKD 241 (523)
T ss_pred CCCEEEEECCCHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 57389997686898679727899999998679859997163472788863235878897799999999999977986779
Q ss_pred HHHHHHCC---------------------------------CC----------------HHHHHHHHCCCCHHHHH-HHH
Q ss_conf 88888268---------------------------------77----------------88999872353102354-433
Q gi|254780859|r 430 ALADLVSG---------------------------------QH----------------PFFKKLQEATRPLIIVG-QGA 459 (700)
Q Consensus 430 ~l~~~~~g---------------------------------~~----------------~~~~~l~~a~~~~ii~G-~g~ 459 (700)
++.+++.| ++ ++++.+++++.++++++ .|.
T Consensus 242 fv~~~t~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tpe~aa~itGvpa~~I~~lA~~~a~~~~~~~~~~~~g~ 321 (523)
T cd02757 242 FVGDFVDGKNYFKAGETVDEESFKEKSTEGLVKWWNLELKDYTPEWAAKISGIPAETIERVAREFATAAPAAAAFTWRGA 321 (523)
T ss_pred HHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 99997340977510245540001024565799999998764599999988797999999999999732894899877144
Q ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH-----
Q ss_conf 210474698989899988741058533475424675310452101776586523688886016759980764220-----
Q gi|254780859|r 460 LRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELD----- 534 (700)
Q Consensus 460 ~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~----- 534 (700)
.++.+|.+..+++..|..++|+++++|+ +.+ + +. ..+++++|+++.||+.
T Consensus 322 ~~~~~g~~~~ra~~~L~~l~G~~~~~GG-~~~--~----------~~------------~p~ik~~~~~~~NP~~~~p~~ 376 (523)
T cd02757 322 TMQNRGSYNSMACHALNGLVGSIDSKGG-LCP--N----------MG------------VPKIKVYFTYLDNPVFSNPDG 376 (523)
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCC-CCC--C----------CC------------CCCCCEEEEECCCHHHHCCCH
T ss_conf 1065699999999999998577999877-478--9----------89------------998558999436976508689
Q ss_pred -----CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCC---EEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -----166543450221166668874557704786202472---088208867420443288555740799999999980
Q gi|254780859|r 535 -----FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSG---LWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 535 -----~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~G---tf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
++.+.+|+|++|.|+|+||++||||||+++|+|++| ++.|.++++|..+|+|+|+||+|+||+|+++||+||
T Consensus 377 ~~~~~al~kldf~Vv~D~~~teTA~~ADiVLPaat~lEr~d~~~~~~~~~~~v~~~~~~veP~gEar~d~~I~~eLA~rl 456 (523)
T cd02757 377 MSWEEALAKIPFHVHLSPFMSETTYFADIVLPDGHHFERWDVMSQENNLHPWLSIRQPVVKSLGEVREETEILIELAKKL 456 (523)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999996699699974898805763778957998010288425657750589984557789645666999999999972
Q ss_pred CCC
Q ss_conf 779
Q gi|254780859|r 607 KCS 609 (700)
Q Consensus 607 G~~ 609 (700)
|.+
T Consensus 457 ~~~ 459 (523)
T cd02757 457 DPK 459 (523)
T ss_pred CCC
T ss_conf 887
No 31
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=100.00 E-value=0 Score=492.65 Aligned_cols=360 Identities=17% Similarity=0.158 Sum_probs=284.7
Q ss_pred EECCCCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHH
Q ss_conf 20121168864-366751599998852478887777411355422100000-0001101100222202324145668887
Q gi|254780859|r 231 DSIDVMDALGS-AIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIK 308 (700)
Q Consensus 231 ~SvC~~C~~GC-~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia 308 (700)
++||+||++|| ++++++++|+|++|++ +|+||||++++++ +|||++||+|++|+|+||||||||++||
T Consensus 1 d~vC~~C~~gC~~l~v~v~~~~i~~v~~----------lC~KG~~~~~~~~~~dRl~~PL~R~~g~~~~iSWdeAl~~ia 70 (421)
T TIGR03129 1 NVVCPFCGCLCDDIEVEVEGNKIVKVEN----------ACRIGAAKFKEAEESHRITRPMIRKNGDGKEVSYEEAIEKAA 70 (421)
T ss_pred CCCCCCCCCCCCCEEEEEECCEEEECCC----------CCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH
T ss_conf 9788845168478799998999965277----------885356558752696322698064599736817999999999
Q ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHC-CCEEEEECCCC
Q ss_conf 5201344531478504323235554788986368772420233444664340-125467787877401-85799973853
Q gi|254780859|r 309 SAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEE-ADAMLIIGSNP 386 (700)
Q Consensus 309 ~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~-ad~illiG~Np 386 (700)
++|++.+.. .++.++..++|+.|+..+|++.+|+ ++|+..+.++.....+ ...+....++.|+++ +|+||+||+||
T Consensus 71 ~~L~~~~~~-~~~g~~~~~~e~~~~~~~la~~~~~-~~d~~~~~c~~~~~~a~~~~g~~~~t~~~~~~~ad~il~~G~Np 148 (421)
T TIGR03129 71 EILKNAKRP-LIYGWSSTSCEAQRAGLELAEKLGA-VIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADVIIYWGTNP 148 (421)
T ss_pred HHHHHCCCC-EEEEECCCCHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEECCCH
T ss_conf 999861787-6999666417899999999999588-41477540368999999856987667455650477899978885
Q ss_pred CCCCCCHHHH--------HHHHHHCCCCEEECCCCCHHHHH---HHHCCCCCHH-----HHHHHHCCCC-----------
Q ss_conf 2257310257--------78999759970661685012233---4430489867-----8888826877-----------
Q gi|254780859|r 387 RLEAAVLNAR--------IRKRWRRGNFPIAVIGDVGELRY---KYEHLGNGSE-----ALADLVSGQH----------- 439 (700)
Q Consensus 387 ~~~~Pvl~~r--------irka~~~g~~~I~vi~~~~~l~~---~~~~l~~~~e-----~l~~~~~g~~----------- 439 (700)
.++||++..| ++++.++|.++|++++....++. .+..+.+|++ ++..++.|++
T Consensus 149 ~~s~P~~~~r~~~~~~~~~~~~~~~~~kliviDpr~t~ta~~Ad~~l~i~PGtD~al~~al~~~i~g~~~~~e~itGv~~ 228 (421)
T TIGR03129 149 MHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQIKPGSDYELISALRAVLRGKEPQPEEVAGIPK 228 (421)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCH
T ss_conf 89685788777887889999645359879998475780556308666018998799999999997679864076609999
Q ss_pred ----HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCC----CCC-
Q ss_conf ----88999872353102354433210474698989899988741058533475424675310452101776----586-
Q gi|254780859|r 440 ----PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFV----PAD- 510 (700)
Q Consensus 440 ----~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~----P~~- 510 (700)
++++.++++++++|++|+|+.++.++..++.++.+|...+|++++. ++.+++++.|.+|+.+++.. |..
T Consensus 229 e~i~~lA~~~a~a~~~~i~~g~g~~~~~~~~~~~~a~~~l~~~l~~~~~~--~~~~l~g~~n~~G~~~~~~~~~g~p~~~ 306 (421)
T TIGR03129 229 EKILELAEILKNAKFGVIFFGLGLTSSLGKHRNVEIAIELVKDLNKYTKF--TIIPMRGHYNVAGFNQVLTWETGYPFGV 306 (421)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CEECCCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 99999999997489669999687132215999999999999986700455--6403778688666000143456886665
Q ss_pred ----------C-CCCHHHHH--HCCCEEEECCCCHHHCCC-------CCCEEEHHHHHHHHHHHHCCEEECCCCCC-CCC
Q ss_conf ----------5-23688886--016759980764220166-------54345022116666887455770478620-247
Q gi|254780859|r 511 ----------D-TINAMNIL--DKTDIVFLLGADELDFSD-------KQALTVYIGSHGDRGAQSADVILPGAAYT-EKS 569 (700)
Q Consensus 511 ----------~-~~~~~~~~--~~~~~l~~~g~d~l~~~~-------~~~fvV~~d~~~t~tA~~ADVVLP~a~~~-Ek~ 569 (700)
+ .....+.+ ++++++|++|+||+...+ +..++|++|+|+|+||++||||||+++|+ ||+
T Consensus 307 ~~~~~~~~~~p~~~~~~~~l~~g~ikal~v~g~NP~~s~P~~~~~~l~~~~~Vv~D~f~TeTa~~ADvVLPaat~~~Ek~ 386 (421)
T TIGR03129 307 DFSRGYPRYNPGETTTVDLLKRKEVDAALIIGSDPGAHFPQDAVKHLAEIPVIVIDPHPTPTTEIADVVIPVAIDGIEAG 386 (421)
T ss_pred CHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHCHHHHHHHHCCCCEEEECCCCCHHHHHCCEEECCCCCCCCCC
T ss_conf 34226864586331599997579988899978872033889999874799989975889810403799954798774488
Q ss_pred CEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2088208867420443288555740799999999980
Q gi|254780859|r 570 GLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 570 Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
|||+|+|||+|+++|+++|| +|+||||+.+||+||
T Consensus 387 Gt~~n~e~r~~~~~~~~~p~--~~sd~~i~~~ia~r~ 421 (421)
T TIGR03129 387 GTAYRMDNVPIRLRKVIESP--EPSDEEILKKILERV 421 (421)
T ss_pred CEEECCCCCEEEEECCCCCC--CCCHHHHHHHHHHCC
T ss_conf 17991798477023377939--879999999998209
No 32
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=100.00 E-value=0 Score=475.20 Aligned_cols=349 Identities=32% Similarity=0.414 Sum_probs=284.4
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCC--CEEECCHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-0001101100222--20232414566888
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARING--RLKPVSWDYALKAI 307 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g--~~~~iSWdeAl~~i 307 (700)
+|+|++|++||+|.+++++|+++||+|++++++|+||+|+||||+|++++ ++||++||+|.++ +|+++|||||++.+
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~rv~~~~~~~~n~g~~c~rgr~~~~~~~~~~Ri~~P~ir~~~~~~~~~isWeeAl~~i 80 (374)
T cd00368 1 PSVCPFCGVGCGILVYVKDGKVVRIEGDPNHPVNEGRLCDKGRAGLDGLYSPDRLKYPLIRVGGRGKFVPISWDEALDEI 80 (374)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCEEECCCCCCEEEECHHHHHHHH
T ss_conf 90278862589808999999999998589888778511887987898626963305876850899974781799999999
Q ss_pred HHHHCCCC-----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHC---CCCCCCCCHHHHHCCCEE
Q ss_conf 75201344-----5314785043232355547889863687724202334446643401---254677878774018579
Q gi|254780859|r 308 KSAVLSSD-----VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGR---ASYIFNPTIQGIEEADAM 379 (700)
Q Consensus 308 a~~L~~~~-----~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~---~~~~~~~~i~die~ad~i 379 (700)
+++|++.. ++++++.|++.++|+.|++++|++.+|+++++++...+......+. ..+..+.++.|+++||+|
T Consensus 81 a~~l~~~~~~~~~~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~i 160 (374)
T cd00368 81 AEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLADIENADLI 160 (374)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCEE
T ss_conf 89999998606987499993699978999999999998289861478875641688999986188889997889629799
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHH---HCCCCCHHH-H-----HHHHCCCC-----HHHHHH
Q ss_conf 997385322573102577899975997066168501223344---304898678-8-----88826877-----889998
Q gi|254780859|r 380 LIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKY---EHLGNGSEA-L-----ADLVSGQH-----PFFKKL 445 (700)
Q Consensus 380 lliG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~---~~l~~~~e~-l-----~~~~~g~~-----~~~~~l 445 (700)
|+||+||++++|+++.|+|+++++|.+.+++.+....+.... ..+.++.+. | ...+.|.. ++++.+
T Consensus 161 l~iG~n~~~~~p~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ad~~~~~~p~~d~al~~~~~~~~i~g~~~~~i~~~a~~~ 240 (374)
T cd00368 161 LLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLPIRPGTDAALALAEWAAEITGVPAETIRALAREF 240 (374)
T ss_pred EEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99679846768789999999986798599984888860586397724599839999807899988794999999999999
Q ss_pred HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEE
Q ss_conf 72353102354433210474698989899988741058533475424675310452101776586523688886016759
Q gi|254780859|r 446 QEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIV 525 (700)
Q Consensus 446 ~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l 525 (700)
++++++++++|.+..++.++.....++..|..++|+.++.|.++.+ +. | .+...|. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~g~~~~~--~~-n-----~~~~~~~-----~~--------- 298 (374)
T cd00368 241 AAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNIGRPGGGLGP--GG-N-----PLVSAPD-----AN--------- 298 (374)
T ss_pred HHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE--CC-C-----HHHHCCC-----HH---------
T ss_conf 8579859994653131546699999999999985669999827770--77-8-----7764869-----68---------
Q ss_pred EECCCCHHHCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98076422016654345022116666887455770478620247208820886742044328855574079999999998
Q gi|254780859|r 526 FLLGADELDFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADE 605 (700)
Q Consensus 526 ~~~g~d~l~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~ 605 (700)
...+.+.+.+|+|++++|+++|+++||||||+++|+|++|||+|.|||+|.++|++.|+|++|+||+||..|+++
T Consensus 299 -----~~~~~~~~~~~~V~~~~~~~~t~~~ADviLP~~~~~E~~g~~~n~eg~~~~~~~~i~p~~~~~~~~~il~~La~~ 373 (374)
T cd00368 299 -----RVRAALKKLDFVVVIDIFMTETAAYADVVLPAATYLEKEGTYTNTEGRVQLFRQAVEPPGEARSDWEILRELAKR 373 (374)
T ss_pred -----HHHHHHHCCCEEEEECCCCCCCHHHCCEEECCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC
T ss_conf -----999996389969998587996087498996899842137725775876999753568974574599999999805
Q ss_pred H
Q ss_conf 0
Q gi|254780859|r 606 L 606 (700)
Q Consensus 606 L 606 (700)
|
T Consensus 374 l 374 (374)
T cd00368 374 L 374 (374)
T ss_pred C
T ss_conf 9
No 33
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=472.32 Aligned_cols=355 Identities=18% Similarity=0.159 Sum_probs=276.5
Q ss_pred EECCCCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 20121168864-36675159999885247888777741135542210000000011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGS-AIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC-~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
++||+||++|| ++++.++||+|+++.+ +|.||+++|. .++|||++||+|. +|+||||||+++|+
T Consensus 1 d~vC~~C~~gC~~l~v~v~~~~v~~~~~----------~C~KG~~~~~-~~~dRl~~Plir~----~~isWdeAi~~iA~ 65 (415)
T cd02761 1 DVVCPFCGLLCDDIEVEVEDNKITKVRN----------ACRIGAAKFA-RYERRITTPRIDG----KPVSLEEAIEKAAE 65 (415)
T ss_pred CCCCCCCCCCCCCEEEEEECCEECCCCC----------CCHHHHHHHC-CCCCCCCCCCCCC----CCCCHHHHHHHHHH
T ss_conf 9678813068675699987999865699----------8820377756-7986456774798----57889999999999
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHC-CCEEEEECCCCC
Q ss_conf 201344531478504323235554788986368772420233444664340-125467787877401-857999738532
Q gi|254780859|r 310 AVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEE-ADAMLIIGSNPR 387 (700)
Q Consensus 310 ~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~-ad~illiG~Np~ 387 (700)
+|++++.. .+++++..++|+.|.+.+|++.+|+ ++|+..+.++.....+ ...+.+..++.|+++ ||+||+||+||.
T Consensus 66 ~L~~~~~~-~~~g~~~~~~~~~~~~~~la~~~~~-~id~~~~~c~~~~~~~~~~~G~~~~t~~e~~~~Ad~Ilv~G~Np~ 143 (415)
T cd02761 66 ILKEAKRP-LFYGLGTTVCEAQRAGIELAEKLGA-IIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADVIVYWGTNPM 143 (415)
T ss_pred HHHHHCCC-EEEEECHHHHHHHHHHHHHHHHHCC-EECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCHH
T ss_conf 99863688-6999705548999999999998488-760222456789999998359988885778525788999788867
Q ss_pred CCCCCHHHH--------HHHHHHCCCCEEECCCCCHHHHHH---HHCCCCCHHH-----HHHHH----------CCC---
Q ss_conf 257310257--------789997599706616850122334---4304898678-----88882----------687---
Q gi|254780859|r 388 LEAAVLNAR--------IRKRWRRGNFPIAVIGDVGELRYK---YEHLGNGSEA-----LADLV----------SGQ--- 438 (700)
Q Consensus 388 ~~~Pvl~~r--------irka~~~g~~~I~vi~~~~~l~~~---~~~l~~~~e~-----l~~~~----------~g~--- 438 (700)
++||++..+ +|++.++|.++|++++....++-. ...+.++++. +...+ .|.
T Consensus 144 ~s~P~~~~~~~~~~r~~~~~~~~~~~~liviDpr~t~ta~~Ad~hl~irPGtD~~l~~al~~~l~~~~~~~~~~tgv~~~ 223 (415)
T cd02761 144 HAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQIDPGSDYELLAALRALLRGAGLVPDEVAGIPAE 223 (415)
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCHH
T ss_conf 96868887788877899986320699799984889804464197743799997999999999971368763243198999
Q ss_pred --CHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCC----CCC--
Q ss_conf --788999872353102354433210474698989899988741058533475424675310452101776----586--
Q gi|254780859|r 439 --HPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFV----PAD-- 510 (700)
Q Consensus 439 --~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~----P~~-- 510 (700)
.++++.++++++++|+||+|+.++.++...+.++.+|...+|++++ .|+.+|+++.|.+|+.+++.. |..
T Consensus 224 ~i~~~A~~~~~a~~~~i~~g~g~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~l~g~~n~~G~~~~~~~~~g~p~~~~ 301 (415)
T cd02761 224 TILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALNEYTK--FALLPLRGHYNVRGFNQVLTWLTGYPFRVD 301 (415)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCEEECCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 999999999749946999835401777899999999999998685467--145617797886464332445678866553
Q ss_pred ---------C-CCCHHHHH--HCCCEEEECCCCHHHCCC-------CCCEEEHHHHHHHHHHHHCCEEECCCCCC-CCCC
Q ss_conf ---------5-23688886--016759980764220166-------54345022116666887455770478620-2472
Q gi|254780859|r 511 ---------D-TINAMNIL--DKTDIVFLLGADELDFSD-------KQALTVYIGSHGDRGAQSADVILPGAAYT-EKSG 570 (700)
Q Consensus 511 ---------~-~~~~~~~~--~~~~~l~~~g~d~l~~~~-------~~~fvV~~d~~~t~tA~~ADVVLP~a~~~-Ek~G 570 (700)
+ .......+ ++++++|++|+||+...+ ...++|++|+|+|+||++||||||+++|+ ||+|
T Consensus 302 ~~~~~~~~~p~~~~~~~~~~~g~i~al~v~~~np~~s~P~~~~~~~~~~~~VV~D~f~TeTa~~ADvVLPaA~~~~Ek~G 381 (415)
T cd02761 302 FSRGYPRYNPGEFTAVDLLAEGEADALLIIASDPPAHFPQSAVKHLAEIPVIVIDPPPTPTTRVADVVIPVAIPGIEAGG 381 (415)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHCCEEECCCCCCCCCCE
T ss_conf 32377756875234999952789888999777866448689999864799899848999443138999817887635880
Q ss_pred EEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 088208867420443288555740799999999980
Q gi|254780859|r 571 LWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 571 tf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
||||+|||+|+++||++| ++|+||+||.+||++|
T Consensus 382 t~tn~e~rvq~~~~a~~p--~~~~D~~Il~~la~~~ 415 (415)
T cd02761 382 TAYRMDGVVVLPLKAVET--ERLPDEEILKQLLEKV 415 (415)
T ss_pred EEECCCCCEEEECCCCCC--CCCCHHHHHHHHHHCC
T ss_conf 799379855643167898--9988899999999519
No 34
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=100.00 E-value=0 Score=462.65 Aligned_cols=393 Identities=23% Similarity=0.266 Sum_probs=300.1
Q ss_pred EEECCCCCCCCCEEEEECCCCEEEE--EECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEEC-----CCCEEECCHH
Q ss_conf 2201211688643667515999988--5247888777741135542210000-000011011002-----2220232414
Q gi|254780859|r 230 TDSIDVMDALGSAIRIDARGCEVMR--ILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARI-----NGRLKPVSWD 301 (700)
Q Consensus 230 ~~SvC~~C~~GC~i~v~v~~g~i~r--v~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~-----~g~~~~iSWd 301 (700)
+.|+|++|++||++.+.+++|++++ +.+.+++++|+|.+|.||+.+.+.+ +++||++||+|. +|+|++||||
T Consensus 41 ~~~~C~~C~~~C~i~~~v~~g~~~~~~~~~~~~~p~~~g~~C~kg~~~~~~~~~~~RL~~Pl~r~~g~rg~g~f~~ISWd 120 (765)
T COG0243 41 VKTICPGCGVGCGIRVHVKDGKVVRITIEGDPDHPINRGRLCAKGARGRERVYSPDRLKYPLLRRVGKRGEGKFVRISWD 120 (765)
T ss_pred CCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCCCCEEEECHH
T ss_conf 25435788899872599968937614777997554355654036665301003831206962014788888867982199
Q ss_pred HHHHHHHHH-HCCCCCCEEEEECCCCC--CHHHHHHHHHHHH-CCCCCEECCCCCCCCCHHHHCC----CCCCCCCHHHH
Q ss_conf 566888752-01344531478504323--2355547889863-6877242023344466434012----54677878774
Q gi|254780859|r 302 YALKAIKSA-VLSSDVKLGAVVGDLSS--VEEIYALKLLMQS-LGCENFDCRQNGEYLDPSYGRA----SYIFNPTIQGI 373 (700)
Q Consensus 302 eAl~~ia~~-L~~~~~~~g~~~g~~~t--~Ee~y~~k~l~~~-lGt~nid~~~~~~~~~~~~~~~----~~~~~~~i~di 373 (700)
||+++|+++ +.+....+| +...+ +|+.|+.++|++. +|++|++++++.|+.+...+.. ......++.|+
T Consensus 121 eA~~~ia~~~~~~~~~~~g---s~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~C~~~~~~~~~~~~G~~~~~~~~~D~ 197 (765)
T COG0243 121 EALDLIAAKLLPRIIGFYG---SGALTTGNEAGYLAGKLARAFLGGNNIDHCGRYCHAAAAAGLPYTFGSGAATGSYPDI 197 (765)
T ss_pred HHHHHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCEEEEECCCCCCCCCCHH
T ss_conf 9999999875234565307---7505525741888889999723566556777654301333010121677767785137
Q ss_pred HCCCEEEEECCCCCCCCCCHHH---HHHHHHHCCCCEEECCCCCHHHH---HHHHCCCC--------------------C
Q ss_conf 0185799973853225731025---77899975997066168501223---34430489--------------------8
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNA---RIRKRWRRGNFPIAVIGDVGELR---YKYEHLGN--------------------G 427 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~---rirka~~~g~~~I~vi~~~~~l~---~~~~~l~~--------------------~ 427 (700)
++||+||+||+||.+.||++.. +++++.++|.+.|++++...+.+ ..+..+.+ +
T Consensus 198 e~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l~irPGTD~Al~~gi~~~li~~~~~D 277 (765)
T COG0243 198 ENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWLPIRPGTDAALALGIAHVLIEENLYD 277 (765)
T ss_pred HHCCEEEEEECCHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 60877999913866607630567999998545788699978876733664384431058959999999999998776402
Q ss_pred HHHHHHHH-CCCC------------------------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 67888882-6877------------------------------8899987235310235443321047469898989998
Q gi|254780859|r 428 SEALADLV-SGQH------------------------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLV 476 (700)
Q Consensus 428 ~e~l~~~~-~g~~------------------------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~ 476 (700)
.++|+..+ .|++ .+++.+..+++.++++|+|+++|.+|.+..+++.+|+
T Consensus 278 ~~Fl~~~t~~g~~~~~~~~~~~~~~~~t~e~a~~itGv~~~I~~lA~~~a~~~~~~~~~g~G~~qh~~G~~~~~ai~~L~ 357 (765)
T COG0243 278 EEFLAKYTNVGFDEFAYLLGLEDAEAKTPEWAEAITGVAEEIRQLARLFAAAKPVTILWGMGIQQHANGEQTVRAIANLA 357 (765)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999862301566665433443024899999874189999999999972178459982223556654699999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCC-CHHCCCCC----CC--------------------CCCCH--HHHH---HCCCEEE
Q ss_conf 874105853347542467531045-21017765----86--------------------52368--8886---0167599
Q gi|254780859|r 477 IDVGGISDSWNGFAVLHTVASRVG-ALDLGFVP----AD--------------------DTINA--MNIL---DKTDIVF 526 (700)
Q Consensus 477 ~~~G~ig~~g~G~~~L~~~~n~~G-a~d~g~~P----~~--------------------~~~~~--~~~~---~~~~~l~ 526 (700)
+++|++|++|+|+++++++.|.+| ..++|..+ .. ++... ..+. .+++++|
T Consensus 358 ll~Gnig~pGgg~~~~~g~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ik~l~ 437 (765)
T COG0243 358 LLTGNIGKPGGGVFPLRGHSNAQGGARDVGGLVKPLPGLPVVRAKTAIPWGRPTDAAAKPGLSTADRALLEGPYPIKALF 437 (765)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCHHHHHHCCCCCEEEEE
T ss_conf 97386789998767777766666767654444555645565245543310463214325774604557751689805999
Q ss_pred ECCCCHHHCCC----------CC-CEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECC-EEEEECCCCCCCCCCCH
Q ss_conf 80764220166----------54-34502211666688745577047862024720882088-67420443288555740
Q gi|254780859|r 527 LLGADELDFSD----------KQ-ALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEG-RVQMGMRAIFPPGDAKE 594 (700)
Q Consensus 527 ~~g~d~l~~~~----------~~-~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~Eg-RvQ~~~~av~p~geak~ 594 (700)
++|.||+.... +. +|+|++|.|+|+||++||+|||+++|+|++|+++|.++ ++|..+|+++|+||+|+
T Consensus 438 ~~~~Np~~~~p~~~~~~~~~~~~~~~vVv~D~~~t~Ta~~ADivLPa~~~~E~~~~~~~~~~~~v~~~~~~v~P~gea~~ 517 (765)
T COG0243 438 VYGGNPVVSAPDDRNVKKALLRDDEFVVVIDIFMTETAKYADIVLPATTFLEKDDIYTNAGRSYVQLRRKVVEPPGEARP 517 (765)
T ss_pred EECCCCHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCC
T ss_conf 94787521078747899998538983999957878327764232677765343675466766159831456799111068
Q ss_pred HHHHHHHHHHHHCCC---CCCC--CHHHHHHHHHHH
Q ss_conf 799999999980779---9687--989999999997
Q gi|254780859|r 595 DWEIICALADELKCS---LPFS--SLSQLRSHLYSH 625 (700)
Q Consensus 595 dw~Il~~La~~LG~~---~~~~--~~~ei~~ei~~~ 625 (700)
||||+.+||++++.. +.+. ...+...+....
T Consensus 518 d~~ii~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (765)
T COG0243 518 DYWIIIELAKRLLGEGVGFFTELGRDEDQWLEHLAN 553 (765)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 099999999986577644011345529999998643
No 35
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=453.09 Aligned_cols=380 Identities=20% Similarity=0.263 Sum_probs=275.3
Q ss_pred CCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEECC--------------CCEEECCHHHHH
Q ss_conf 6436675159999885247888777741135542210000-0000110110022--------------220232414566
Q gi|254780859|r 240 GSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARIN--------------GRLKPVSWDYAL 304 (700)
Q Consensus 240 GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~--------------g~~~~iSWdeAl 304 (700)
.|++.++|+||+|+||+|+++++ +.+|.||+++++.+ +||||++||+|++ |+|++|||||||
T Consensus 6 ~C~~~v~V~dG~vvki~gd~~~~---~~~C~KG~~~~~~~y~pdRl~~PLkR~G~~~~~~~~~~~RG~gk~~~ISWDEAl 82 (609)
T cd02751 6 WGPFKAHVKDGVIVRVEPDDTDQ---PRPCPRGRSVRDRVYSPDRIKYPMKRVGWLGNGPGSRELRGEGEFVRISWDEAL 82 (609)
T ss_pred CCCEEEEEECCEEEEEECCCCCC---CCCCHHHHHHHHHHCCCCHHHCCEEEECCCCCCCCCCCCCCCCCEEEECHHHHH
T ss_conf 26259999999999987689899---973889996799866975532885950365556656565778977993399999
Q ss_pred HHHHHHHCCCCCCEEE--EE----CCCCC---CHHHHHHHHHHHHCCC--CCEEC--CCC-CCCCCHHHHCCC-CCCCCC
Q ss_conf 8887520134453147--85----04323---2355547889863687--72420--233-444664340125-467787
Q gi|254780859|r 305 KAIKSAVLSSDVKLGA--VV----GDLSS---VEEIYALKLLMQSLGC--ENFDC--RQN-GEYLDPSYGRAS-YIFNPT 369 (700)
Q Consensus 305 ~~ia~~L~~~~~~~g~--~~----g~~~t---~Ee~y~~k~l~~~lGt--~nid~--~~~-~~~~~~~~~~~~-~~~~~~ 369 (700)
++||+||++++++||. +. +...+ .....++++|++.+|. ++.++ ... .......+|... +....+
T Consensus 83 ~~IA~kl~~i~~~~Gp~sv~~~~~~~~~~~~~~~~~~~~~r~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 162 (609)
T cd02751 83 DLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSDEVYEQGTS 162 (609)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999974975688405654432145679999999999708864778986478999997866315777777898
Q ss_pred HHHH-HCCCEEEEECCCCCCCCCCH--------HHHHHHHHHCCCCEEECCCCCHHHHH----HHHCCCCCHH-------
Q ss_conf 8774-01857999738532257310--------25778999759970661685012233----4430489867-------
Q gi|254780859|r 370 IQGI-EEADAMLIIGSNPRLEAAVL--------NARIRKRWRRGNFPIAVIGDVGELRY----KYEHLGNGSE------- 429 (700)
Q Consensus 370 i~di-e~ad~illiG~Np~~~~Pvl--------~~rirka~~~g~~~I~vi~~~~~l~~----~~~~l~~~~e------- 429 (700)
+.|+ ++||+||+||+||.+++++. ..++++|.++|+++|+++++....+. .+..+.+|++
T Consensus 163 ~~~~~~~s~~il~~G~Np~~t~~~~~~~~~~~~~~~l~~a~~~GaklIvVDPr~t~tA~~~AD~wl~irPGTD~AL~lam 242 (609)
T cd02751 163 WDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIPIRPGTDVALMLAM 242 (609)
T ss_pred HHHHHHCCCEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCEEECCCCCCCHHHHHHH
T ss_conf 67898609899998888789575654566625789999999888979998998882556613888576899679999999
Q ss_pred -------------HHHHHHCCCCH--------------------------------HHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf -------------88888268778--------------------------------899987235310235443321047
Q gi|254780859|r 430 -------------ALADLVSGQHP--------------------------------FFKKLQEATRPLIIVGQGALRASD 464 (700)
Q Consensus 430 -------------~l~~~~~g~~~--------------------------------~~~~l~~a~~~~ii~G~g~~~~~~ 464 (700)
++++++.|+++ +++.+++ ++++|++|.|+.++.+
T Consensus 243 ~~vii~e~l~D~~Fv~~~t~Gfde~~~~v~g~~Dg~~~TPE~aa~itGVpa~~I~~~A~~~a~-~~~~i~~g~g~~~~~~ 321 (609)
T cd02751 243 AHTLITEDLHDQAFLARYTVGFDEFKDYLLGESDGVPKTPEWAAEITGVPAETIRALAREIAS-KRTMIAQGWGLQRAHH 321 (609)
T ss_pred HHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCCC
T ss_conf 999998788317888763546699987642664467689999987778899999999999974-6878997774342552
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCC---------CCCCCH---HHHH-------------
Q ss_conf 469898989998874105853347542467531045210177658---------652368---8886-------------
Q gi|254780859|r 465 NVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPA---------DDTINA---MNIL------------- 519 (700)
Q Consensus 465 g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~---------~~~~~~---~~~~------------- 519 (700)
|.++.+++..|++++|+++++|+|+.+..+..+..+...++..+. ...+.. .+.+
T Consensus 322 g~~~~rai~~L~~LtGnig~pGgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 401 (609)
T cd02751 322 GEQPAWMLVTLAAMLGQIGLPGGGFGFGYGYSNGGGPPRGGAGGPGLPQGKNPVKDSIPVARIADALLNPGKEFTANGKL 401 (609)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHH
T ss_conf 79999999999998668999997666787877887650114576547666675111251878777775788501202000
Q ss_pred ---HCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCE---EEEECCEEEEEC
Q ss_conf ---016759980764220----------1665434502211666688745577047862024720---882088674204
Q gi|254780859|r 520 ---DKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGL---WVNTEGRVQMGM 583 (700)
Q Consensus 520 ---~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gt---f~N~EgRvQ~~~ 583 (700)
..++++|+.|.||+. ++.+.+|+|++|.|+|+||++||||||+++|+|+++. ..+.++++|..+
T Consensus 402 ~~~~~Ik~l~~~g~Np~~s~p~~~~~~~al~kldf~Vv~D~~~teTa~~ADvVLPa~t~~E~~d~~~~~~~~~~~~~~~~ 481 (609)
T cd02751 402 KTYPDIKMIYWAGGNPLHHHQDLNRLIKALRKDETIVVHDIFWTASARYADIVLPATTSLERNDIGLTGNYSNRYLIAMK 481 (609)
T ss_pred CCCCCEEEEEEECCCHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCCEEEEEEC
T ss_conf 12686169999678756428798999999864784999736568460416689757864113676566667860387403
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHH
Q ss_conf 43288555740799999999980779968---79899999999
Q gi|254780859|r 584 RAIFPPGDAKEDWEIICALADELKCSLPF---SSLSQLRSHLY 623 (700)
Q Consensus 584 ~av~p~geak~dw~Il~~La~~LG~~~~~---~~~~ei~~ei~ 623 (700)
|||+|+||+|+||+|+++||+|||++-.| .+.++..+++.
T Consensus 482 k~i~P~gE~k~d~eI~~~LA~rlG~~~~f~~~~~~~~~~~~~~ 524 (609)
T cd02751 482 QAVEPLGEARSDYEIFAELAKRLGVEEEFTEGRDEMEWLEHLY 524 (609)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 4437953466899999999998299653689999999999999
No 36
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443 This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=455.48 Aligned_cols=405 Identities=22% Similarity=0.295 Sum_probs=316.6
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECC---------------CCEEEEEECCCCCC
Q ss_conf 654662220121210122332333444302352201211688643667515---------------99998852478887
Q gi|254780859|r 198 SEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAIRIDAR---------------GCEVMRILPRINES 262 (700)
Q Consensus 198 ~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i~v~v~---------------~g~i~rv~~~~~~~ 262 (700)
+.+.|-=+|+-|+=|=.-. ..+| --+=+.++|||+||+|+|+|.+++. ..|++.|+|+||||
T Consensus 18 ~~~ggLGfdlapa~A~~rt-m~lK--~~~Ak~t~s~C~YCsVsCG~l~ystGkPynsl~S~~~~~~~~r~ihvEGdPDhP 94 (1043)
T TIGR01553 18 SALGGLGFDLAPAKARART-MELK--LVKAKETKSVCTYCSVSCGLLVYSTGKPYNSLLSDTADNKKERLIHVEGDPDHP 94 (1043)
T ss_pred HHHHHCCCCCCHHHHHHHH-HHHH--HHHHHCCCCCCCCCCCCCCHHEECCCCCCHHHCCCCCCCCEEEEEEECCCCCCC
T ss_conf 8775203110013556666-5542--121102355467312002410011787520001455544202257723855688
Q ss_pred CCCCEECCCCCCCCCHHHH-CCCCHHHEECCC--CEEECCHHHHHHHHHHHHCCCCCC-----------------EEEEE
Q ss_conf 7774113554221000000-001101100222--202324145668887520134453-----------------14785
Q gi|254780859|r 263 INEEWISDKTRFIWDGLKV-QRLDCPYARING--RLKPVSWDYALKAIKSAVLSSDVK-----------------LGAVV 322 (700)
Q Consensus 263 vN~g~lC~KGRf~~d~~~~-dRL~~PliR~~g--~~~~iSWdeAl~~ia~~L~~~~~~-----------------~g~~~ 322 (700)
||+|-||+||--.+|++++ +|+++||-|.-| +|+++|||+||+.||+.+++.++. ++..+
T Consensus 95 inrG~LCpKGA~~~d~vn~e~R~~~PlYRapGSd~WeeiSWd~ai~~iAr~vkdtRdatFv~Kd~~G~vVNRcd~i~~~~ 174 (1043)
T TIGR01553 95 INRGALCPKGASTLDYVNAEDRSAKPLYRAPGSDKWEEISWDEAIEKIARLVKDTRDATFVEKDAKGKVVNRCDSIAIVV 174 (1043)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCEEEEE
T ss_conf 67787577765504554275656787557888712435166899999999875000011002215788786423336676
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEE------CCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 0432323555478898636877242------0233444664340125467787877401857999738532257310257
Q gi|254780859|r 323 GDLSSVEEIYALKLLMQSLGCENFD------CRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNAR 396 (700)
Q Consensus 323 g~~~t~Ee~y~~k~l~~~lGt~nid------~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~r 396 (700)
|+-.+|||.++.++..+.||-..+. |....+.+.+++||++ +++..=||.|||+||+.|+||+|+|||-+-+
T Consensus 175 ~sam~NEe~wl~~kw~r~LGl~~~e~QA~i~H~pTVAsLApsfGRGA--MTNnWvDikNsdli~v~GgNPAEnHP~gFkW 252 (1043)
T TIGR01553 175 ASAMDNEEAWLTQKWLRALGLVAVENQARICHAPTVASLAPSFGRGA--MTNNWVDIKNSDLILVMGGNPAENHPVGFKW 252 (1043)
T ss_pred ECCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHCCCCCCCC--CCCCEEEEECCCEEEECCCCCCCCCCCCCEE
T ss_conf 32530368999999998706212110360234331554315557666--4255141103668897177872026765100
Q ss_pred HHHHH-HCCCCEEECCCCCHHH---HHHHHCCCCCHH-------------------------------------------
Q ss_conf 78999-7599706616850122---334430489867-------------------------------------------
Q gi|254780859|r 397 IRKRW-RRGNFPIAVIGDVGEL---RYKYEHLGNGSE------------------------------------------- 429 (700)
Q Consensus 397 irka~-~~g~~~I~vi~~~~~l---~~~~~~l~~~~e------------------------------------------- 429 (700)
.-+|. ++|++.|+|+|+.... +..+..|++|++
T Consensus 253 ai~Akek~GAkiI~iDPRfnRTa~vaDl~apiRsGsDIaFL~G~i~Y~Le~e~yqkeYV~~yTnasFiv~EgF~FedGLF 332 (1043)
T TIGR01553 253 AIKAKEKKGAKIIVIDPRFNRTAAVADLYAPIRSGSDIAFLNGLIKYVLEKEKYQKEYVKLYTNASFIVDEGFAFEDGLF 332 (1043)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEECCCCCCCCCCE
T ss_conf 22111137877999788987101001133216898338887679999874033100112001365406617865115742
Q ss_pred ----------------------------------------HHHHHHCCCCH----------------HHHHHHHCCC---
Q ss_conf ----------------------------------------88888268778----------------8999872353---
Q gi|254780859|r 430 ----------------------------------------ALADLVSGQHP----------------FFKKLQEATR--- 450 (700)
Q Consensus 430 ----------------------------------------~l~~~~~g~~~----------------~~~~l~~a~~--- 450 (700)
.|+++.+-+++ +++++.+...
T Consensus 333 ~GYn~e~R~YDkskW~yefDPenG~pKrD~tlkHPRCV~nIlKeHysRYtpe~vs~IcG~~kelfL~v~ee~~ktg~PnK 412 (1043)
T TIGR01553 333 AGYNKETRKYDKSKWDYEFDPENGYPKRDETLKHPRCVLNILKEHYSRYTPEVVSRICGVKKELFLKVAEEVAKTGKPNK 412 (1043)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 06673446657642674237667678886667885159988532035477334222058758899999999853687861
Q ss_pred -CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCC--------------------
Q ss_conf -10235443321047469898989998874105853347542467531045210177658--------------------
Q gi|254780859|r 451 -PLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPA-------------------- 509 (700)
Q Consensus 451 -~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~-------------------- 509 (700)
..|++.+|.++|+-|+|++|+++.+.+++||+|-+|+|+|.|+|++|+||.-|+|.++.
T Consensus 413 ~mTilYAlGwT~Hs~GtQnIR~m~i~QLLLGNiG~pGGGiNALRGhsNVQG~TD~gll~~~lPgY~~~p~~~~~ty~~y~ 492 (1043)
T TIGR01553 413 AMTILYALGWTEHSVGTQNIRAMAILQLLLGNIGVPGGGINALRGHSNVQGSTDLGLLNKSLPGYLKLPKAEETTYEQYL 492 (1043)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 34788740353212114578999999988752478887601123675666651122020047644678886532189998
Q ss_pred -------------------------------------------------CCCCC-HH-----HHH-HCCCEEEECCCCHH
Q ss_conf -------------------------------------------------65236-88-----886-01675998076422
Q gi|254780859|r 510 -------------------------------------------------DDTIN-AM-----NIL-DKTDIVFLLGADEL 533 (700)
Q Consensus 510 -------------------------------------------------~~~~~-~~-----~~~-~~~~~l~~~g~d~l 533 (700)
+++.+ .. .|. ++++-++..|.|++
T Consensus 493 k~~TP~~~~P~s~Nyw~n~pKff~S~~K~mwgDaa~~EN~~aydyLpK~e~gydysw~~~~ddM~~GKi~G~~~~g~N~l 572 (1043)
T TIGR01553 493 KKITPKKLDPQSVNYWSNFPKFFVSYLKSMWGDAATKENDFAYDYLPKAEDGYDYSWLKLVDDMFKGKIKGFVAAGLNVL 572 (1043)
T ss_pred HCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEHHHHHHHH
T ss_conf 52688757886001100476031243434078677765662346545777776760789888763574014022124333
Q ss_pred H----------CCCCCCEEEHHHHHHHHHHHH--C--------------C-EEECCCCCCCCCCEEEEECCEEEEECCCC
Q ss_conf 0----------166543450221166668874--5--------------5-77047862024720882088674204432
Q gi|254780859|r 534 D----------FSDKQALTVYIGSHGDRGAQS--A--------------D-VILPGAAYTEKSGLWVNTEGRVQMGMRAI 586 (700)
Q Consensus 534 ~----------~~~~~~fvV~~d~~~t~tA~~--A--------------D-VVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av 586 (700)
+ .+.+++.+|++|.|++||+++ + . ++||+|.|+||||+++|+-|-+|+-.++.
T Consensus 573 ns~pN~nKT~~al~kLkwmVv~dpf~~Et~~FWr~~gesnn~dPkeikTEvf~LPtavf~EkEGSi~NSgRW~qW~ykg~ 652 (1043)
T TIGR01553 573 NSLPNSNKTLEALKKLKWMVVMDPFDIETAEFWRAEGESNNLDPKEIKTEVFVLPTAVFLEKEGSISNSGRWVQWKYKGT 652 (1043)
T ss_pred HCCCCCHHHHHHHHHCCEEEECCCCCCCCHHHHCCCCCCCCCCCHHHCEEEEECCCEEEEECCCCEEECCCCEEEEEECC
T ss_conf 14656157999975184278606001232344068887667781130045533321100204755210643114355368
Q ss_pred CCCCCCCHHHHHHHHHHHHHC
Q ss_conf 885557407999999999807
Q gi|254780859|r 587 FPPGDAKEDWEIICALADELK 607 (700)
Q Consensus 587 ~p~geak~dw~Il~~La~~LG 607 (700)
+|||+|+||.+||.+|+++|.
T Consensus 653 dppg~A~pd~di~~~l~~~~~ 673 (1043)
T TIGR01553 653 DPPGDALPDVDILSELAKKLK 673 (1043)
T ss_pred CCCCCCCCCHHHHHHHHHHHH
T ss_conf 768566760578999999999
No 37
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=436.79 Aligned_cols=370 Identities=16% Similarity=0.211 Sum_probs=263.6
Q ss_pred CCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEECC---------------CCEEECCHH
Q ss_conf 886436675159999885247888777741135542210000-0000110110022---------------220232414
Q gi|254780859|r 238 ALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARIN---------------GRLKPVSWD 301 (700)
Q Consensus 238 ~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~---------------g~~~~iSWd 301 (700)
+--|.++++|+||+|+||+|++++|.+ |.||+...+.+ ++|||++||+|+| |+|++||||
T Consensus 4 ~~~~~~~~~V~dGrvvkv~g~~~~p~~----~~~g~~~~~~vy~pdRl~~PmkR~G~~~~~~~~~~~~RG~g~f~rISWD 79 (609)
T cd02769 4 SHWGAFRARVKDGRIVGVRPFEEDPDP----SPLLDGVPDAVYSPTRIKYPMVRRGWLEKGPGSDRSLRGKEEFVRVSWD 79 (609)
T ss_pred CCCCCEEEEEECCEEEEEECCCCCCCC----HHHHHCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEECCHH
T ss_conf 523446999999999998768889985----0767141875149003368868622544566666566778987983599
Q ss_pred HHHHHHHHHHCCCCCCEEE--E-ECCC------CCCHHHHHHHHHHHHCCCC-----CEECCCCCCCCCHHHHCC--CCC
Q ss_conf 5668887520134453147--8-5043------2323555478898636877-----242023344466434012--546
Q gi|254780859|r 302 YALKAIKSAVLSSDVKLGA--V-VGDL------SSVEEIYALKLLMQSLGCE-----NFDCRQNGEYLDPSYGRA--SYI 365 (700)
Q Consensus 302 eAl~~ia~~L~~~~~~~g~--~-~g~~------~t~Ee~y~~k~l~~~lGt~-----nid~~~~~~~~~~~~~~~--~~~ 365 (700)
|||++||+||++++++||. + .++. ........+++|++.+|.. ++++.+..+......|.. ...
T Consensus 80 EAld~IA~kl~~i~~~~G~~sv~~~~~g~~~~g~~~~~~~~~~r~~~~~gg~~~~~~~~~~~a~~~~~~~~~G~~~~~~~ 159 (609)
T cd02769 80 EALDLVAAELKRVRKTYGNEAIFGGSYGWSSAGRFHHAQSLLHRFLNLAGGYVGSVGDYSTGAAQVILPHVVGSMEVYTE 159 (609)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999985985798515554436741578999999999738865889983567898763543614545588
Q ss_pred CCCCHHH-HHCCCEEEEECCCCCCCCCCH---------HHHHHHHHHCCCCEEECCCCCHHHHHHHH----CCCCCHH--
Q ss_conf 7787877-401857999738532257310---------25778999759970661685012233443----0489867--
Q gi|254780859|r 366 FNPTIQG-IEEADAMLIIGSNPRLEAAVL---------NARIRKRWRRGNFPIAVIGDVGELRYKYE----HLGNGSE-- 429 (700)
Q Consensus 366 ~~~~i~d-ie~ad~illiG~Np~~~~Pvl---------~~rirka~~~g~~~I~vi~~~~~l~~~~~----~l~~~~e-- 429 (700)
...++++ +++||+||+||+||.+++++. ..+|++|.++|+++|+|+++....+...+ .+.+|++
T Consensus 160 ~~~~~~~~~~na~~iv~wG~Np~~t~~~~~~~~~~h~~~~~l~~a~~~GaklIvVDPr~t~tA~~ad~~wlpirPGTD~A 239 (609)
T cd02769 160 QQTSWPVIAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELGAEWIAIRPGTDVA 239 (609)
T ss_pred CCCCCHHHHHHCCEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCHHH
T ss_conf 88882456751666899756766626043477442057899999997899499989988737887271554657896599
Q ss_pred ----------------------------HHHHHHCCC------C----------------HHHHHHHHCCCCHHHHHHHH
Q ss_conf ----------------------------888882687------7----------------88999872353102354433
Q gi|254780859|r 430 ----------------------------ALADLVSGQ------H----------------PFFKKLQEATRPLIIVGQGA 459 (700)
Q Consensus 430 ----------------------------~l~~~~~g~------~----------------~~~~~l~~a~~~~ii~G~g~ 459 (700)
.+++.+.|. + .+++.+++ +++++++|+|+
T Consensus 240 L~lam~~vii~e~l~D~~Fv~~~t~Gfe~~~~~l~g~~Dg~~~TPE~aa~itGVpa~~I~~lA~~~a~-~~~~i~~g~g~ 318 (609)
T cd02769 240 LMLALAHTLVTEGLHDKAFLARYTVGFDKFLPYLLGESDGVPKTPEWAAAICGIPAETIRELARRFAS-KRTMIMAGWSL 318 (609)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCEEEECCCC
T ss_conf 99999999998769737889863567899998751542355589999987868899999999999983-69758987756
Q ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCC----CCC-----CCCCCH---HHHH--------
Q ss_conf 21047469898989998874105853347542467531045210177----658-----652368---8886--------
Q gi|254780859|r 460 LRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGF----VPA-----DDTINA---MNIL-------- 519 (700)
Q Consensus 460 ~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~----~P~-----~~~~~~---~~~~-------- 519 (700)
.++.+|.++.+++..|++++|+++++|+|+++..+..|..+....+. +|. ...+.. ..++
T Consensus 319 ~~~~~g~~~~rai~~L~altGnig~pGgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pg~~~~ 398 (609)
T cd02769 319 QRAHHGEQPHWMAVTLAAMLGQIGLPGGGFGFGYHYSNGGGPPRGAAPPPALPQGRNPVSSFIPVARIADMLLNPGKPFD 398 (609)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHH
T ss_conf 51236318999999999984899998875168867678877434456656565555752222418899888757996321
Q ss_pred --------HCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCC-EEEEECCEEE
Q ss_conf --------016759980764220----------166543450221166668874557704786202472-0882088674
Q gi|254780859|r 520 --------DKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSG-LWVNTEGRVQ 580 (700)
Q Consensus 520 --------~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~G-tf~N~EgRvQ 580 (700)
..++++|+.|.||+. .+.+.+|+|++|.|+|+||++||||||+++|+|+++ ++++.++.+|
T Consensus 399 ~~g~~~~~p~ik~l~~~g~Np~~s~p~~~~~~eal~kld~~Vv~D~~~teTa~~ADiVLPaat~~E~~d~~~~~~~~~~~ 478 (609)
T cd02769 399 YNGKKLTYPDIKLVYWAGGNPFHHHQDLNRLIRAWQKPETVIVHEPFWTATARHADIVLPATTSLERNDIGGSGDNRYIV 478 (609)
T ss_pred HCHHHHCCCCCEEEEEECCCHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHCCEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf 03133127774389994888100572899999998578809998477786541176897078735137852437885403
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 20443288555740799999999980779968
Q gi|254780859|r 581 MGMRAIFPPGDAKEDWEIICALADELKCSLPF 612 (700)
Q Consensus 581 ~~~~av~p~geak~dw~Il~~La~~LG~~~~~ 612 (700)
..+|+|+|+||+|+||+|+++||+|||++-.|
T Consensus 479 ~~~~aveP~gEak~d~eI~~eLA~rlG~~~~f 510 (609)
T cd02769 479 AMKQVVEPVGEARDDYDIFADLAERLGVEEQF 510 (609)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 20125589424658999999999972996757
No 38
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=100.00 E-value=0 Score=422.69 Aligned_cols=380 Identities=18% Similarity=0.159 Sum_probs=270.5
Q ss_pred EEEEEECC-CCCCCCCEEEEECCCCEEEEEECCCC-------CCCCCCEECCCCCCCCCHH-HHCCCCHHHEECC----C
Q ss_conf 23522012-11688643667515999988524788-------8777741135542210000-0000110110022----2
Q gi|254780859|r 227 LTKTDSID-VMDALGSAIRIDARGCEVMRILPRIN-------ESINEEWISDKTRFIWDGL-KVQRLDCPYARIN----G 293 (700)
Q Consensus 227 l~~~~SvC-~~C~~GC~i~v~v~~g~i~rv~~~~~-------~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~----g 293 (700)
-|.+.|+| +.|+.+|.+.++||||.|+|++...+ .|-.+.+.|.||+..-.++ +||||++||+|++ |
T Consensus 55 dkv~~st~~~NC~g~C~~kv~VkdG~v~~~~~~~d~p~~~~d~p~~~pR~C~RG~s~~~~~YspdRlkyPmkR~g~RG~G 134 (912)
T TIGR03479 55 DKVGRGAHLNNCTGSCAFYVYVKNGIVWREEQSADYPQCNPDIPDYNPRGCQKGACYNNYMYGDDRLKYPLKRVGERGEG 134 (912)
T ss_pred CCEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCEECHHHCCCCCEECCCCCCC
T ss_conf 62686030899988787179998999999863677888899987767067731342131640830147887338899999
Q ss_pred CEEECCHHHHHHHHHHHHCCCCCCEEE--EE--CC--CCCCHHHHHHHHHHHHCCCCCEECCCCCCCC----CHHHHCCC
Q ss_conf 202324145668887520134453147--85--04--3232355547889863687724202334446----64340125
Q gi|254780859|r 294 RLKPVSWDYALKAIKSAVLSSDVKLGA--VV--GD--LSSVEEIYALKLLMQSLGCENFDCRQNGEYL----DPSYGRAS 363 (700)
Q Consensus 294 ~~~~iSWdeAl~~ia~~L~~~~~~~g~--~~--g~--~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~----~~~~~~~~ 363 (700)
+|++||||||+++||++|+++.++||. +. ++ ..+.-...+..+|++.+|....++....+.+ ...+| .
T Consensus 135 ~f~riSWDEA~~~IA~~l~~~~~~yGp~~i~~~~~~~~~~~~~~~~~~r~~~l~Gg~~~~~~~~~~d~~~~~~~~~G--~ 212 (912)
T TIGR03479 135 KWKRISWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFG--K 212 (912)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHEEE--C
T ss_conf 88777699999999998999999659972999788853115666899999997088578864455753564563560--1
Q ss_pred CCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHH---HCCCCC-------------
Q ss_conf 4677878774018579997385322573102577899975997066168501223344---304898-------------
Q gi|254780859|r 364 YIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKY---EHLGNG------------- 427 (700)
Q Consensus 364 ~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~---~~l~~~------------- 427 (700)
.....+..|+.||++||+||+||.++.+--..++.+|..+|++.|+|+++..+.+... ..+.+|
T Consensus 213 ~~~~~~~~D~~ns~~ii~wG~Np~~t~~~~~~~~~ear~~GaKvIvIDPryt~tA~~AD~WlpirPGTD~ALalam~hvI 292 (912)
T TIGR03479 213 AHDSATSDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAALALGMVQVI 292 (912)
T ss_pred CCCCCCHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCEEECCCCCCHHHHHHHHHHHH
T ss_conf 66789844775488899989895782664589999999779979999488706789618301777997799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780859|r 428 -------------------------------------------------------------------------------- 427 (700)
Q Consensus 428 -------------------------------------------------------------------------------- 427 (700)
T Consensus 293 i~e~~~D~~fv~~~Td~PfLV~~d~g~flra~d~~~~~~~~~~~~~D~~~g~~~~~~g~~g~~~~~l~l~~~dp~l~G~~ 372 (912)
T TIGR03479 293 IDEKLYDAAFLKEQTDLPLLVRMDTGKFLREADVEAGGSDKVFYIWDSKTGKAVKAKGSMGSEDKTLKLDDFDPALEGTF 372 (912)
T ss_pred HHCCCCCHHHHHHHCCCHHHEECCCCCCCCHHHCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 97687448999984564021102444312022213467543046652467853035765444433122345663334402
Q ss_pred ---------------HHHHHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf ---------------678888826877----------------8899987235310235443321047469898989998
Q gi|254780859|r 428 ---------------SEALADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLV 476 (700)
Q Consensus 428 ---------------~e~l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~ 476 (700)
++.|.+.+..++ .++++++++++++|++|.|+.++.+|.++.+++..|.
T Consensus 373 ~~~~~~~~~v~v~tvf~~l~~~~~~yTPewaa~ITGVpa~~I~~lAre~a~~~~~~i~~G~G~~~~~~g~~~~rai~~L~ 452 (912)
T TIGR03479 373 EARLKNGNTIQVRTVFEGLRAELADYTPEKAAAITGVPPSVIRELAREFAKAKKASIITGFNSAKWYHGDLMERALFLLL 452 (912)
T ss_pred EEECCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCHHCCCCCHHHHHHHHHHHH
T ss_conf 33204688502314999999986349999998887969999999999998479807955840100252899999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCC---CCHHCC-------------CCCC---------------CCCCCHH-HH----H-
Q ss_conf 87410585334754246753104---521017-------------7658---------------6523688-88----6-
Q gi|254780859|r 477 IDVGGISDSWNGFAVLHTVASRV---GALDLG-------------FVPA---------------DDTINAM-NI----L- 519 (700)
Q Consensus 477 ~~~G~ig~~g~G~~~L~~~~n~~---Ga~d~g-------------~~P~---------------~~~~~~~-~~----~- 519 (700)
+++|++|++|+|.+...++.+.. |...++ ..|. ..+.... .. +
T Consensus 453 ~LtG~iG~~GGg~~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 532 (912)
T TIGR03479 453 ALTGNWGKTGTGDTHYIGQDKNWVLPGVKALAFPTLKAPTRTDEMGVPTTVWTYYHAGNLKAWTGPGLDETGAYLDESID 532 (912)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98577989888766677777754666633445677667886665356512220134543101257761478999999987
Q ss_pred -----------HCCCEEEECCCCHHH-----------CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCC-EEEEEC
Q ss_conf -----------016759980764220-----------166543450221166668874557704786202472-088208
Q gi|254780859|r 520 -----------DKTDIVFLLGADELD-----------FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSG-LWVNTE 576 (700)
Q Consensus 520 -----------~~~~~l~~~g~d~l~-----------~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~G-tf~N~E 576 (700)
..++++++++.|++. .+.+.+|+|++|.+||+||++||||||+++|+||.+ +.++..
T Consensus 533 ~gw~p~~p~~~~~pk~~~~~~~N~l~s~~g~~~~~~~ll~kld~iV~~D~~mt~Ta~yADiVLPaat~~Ek~Dl~~t~~~ 612 (912)
T TIGR03479 533 KGWMPNYPRDGKDPKVYIVLRGNPFRRAKGAKAVRENLLPKLELIVDINFRMDSTAMYADIVLPAAWHYEKHDLRTTSGH 612 (912)
T ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHCCCCCCCCC
T ss_conf 06776565458998799996886673492699999999737997999825128178764200666416552577521676
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 86742044328855574079999999998077
Q gi|254780859|r 577 GRVQMGMRAIFPPGDAKEDWEIICALADELKC 608 (700)
Q Consensus 577 gRvQ~~~~av~p~geak~dw~Il~~La~~LG~ 608 (700)
..+|..+|||+|++|+|+||+|+.+||++||.
T Consensus 613 ~~v~~~~~ai~P~~EarsD~eI~~~LAkrlg~ 644 (912)
T TIGR03479 613 RFINFFDRPVKPMGESKTDWQIFALLAKKIQE 644 (912)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 11551166769974677699999999999844
No 39
>pfam00384 Molybdopterin Molybdopterin oxidoreductase.
Probab=100.00 E-value=0 Score=430.07 Aligned_cols=321 Identities=42% Similarity=0.655 Sum_probs=256.2
Q ss_pred CCCHHHEEC-CCCEEECCHHHHHHHHHHHHCCCCCCEE-------EEECCCCCCHHHHHHHHHHHHCCCCCEECCCC---
Q ss_conf 011011002-2220232414566888752013445314-------78504323235554788986368772420233---
Q gi|254780859|r 283 RLDCPYARI-NGRLKPVSWDYALKAIKSAVLSSDVKLG-------AVVGDLSSVEEIYALKLLMQSLGCENFDCRQN--- 351 (700)
Q Consensus 283 RL~~PliR~-~g~~~~iSWdeAl~~ia~~L~~~~~~~g-------~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~--- 351 (700)
||++||+|+ +|+|++|||||||++||++|+++++++| ++.|+..++|+.|++++|++.+|++|+.+...
T Consensus 1 Ri~~Pl~R~g~g~~~~iSWdeAl~~ia~~l~~~~~~~g~~si~~~~~~g~~~~~e~~~~~~~l~~~~g~~~~~~~~~~~~ 80 (358)
T pfam00384 1 RLKYPMVRRGEGKFVRVSWDEALDLIAKKLKRIIKKYGPDAIAINGGSGGLTDVESLYALKKLLNRLGSKNGNTEDHNGD 80 (358)
T ss_pred CCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98542268999977984199999999999999999749864999996277535899999999999967997487689878
Q ss_pred CCCCCHHHH---CCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCC--CC
Q ss_conf 444664340---1254677878774018579997385322573102577899975997066168501223344304--89
Q gi|254780859|r 352 GEYLDPSYG---RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYEHL--GN 426 (700)
Q Consensus 352 ~~~~~~~~~---~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~~~l--~~ 426 (700)
.+......+ ...+..++++.|++++|+||+||+||++++|++++|+|+++++++.++++++++...++...++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~Di~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~g~klv~idpr~t~t~ad~~l~i~P 160 (358)
T pfam00384 81 LCTAAAAFGSDLRSNYLFNNSIADIENADLILLIGTNPREEAPILNARIRKAALKGKAKVIVIGPRLDETYADEHLGIKP 160 (358)
T ss_pred CCHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEEECCCHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCC
T ss_conf 66668877551100466799988997398899977885785865247889998762203898568864255541148896
Q ss_pred CHHHHHHHHCCCCHHHH----HHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCCC
Q ss_conf 86788888268778899----98723531023544332104746989898999887410585334754---246753104
Q gi|254780859|r 427 GSEALADLVSGQHPFFK----KLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFA---VLHTVASRV 499 (700)
Q Consensus 427 ~~e~l~~~~~g~~~~~~----~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~---~L~~~~n~~ 499 (700)
+++..... ...+.+.+ ...-++++++++|.++.++.++....+++..|+.++|+++++|+|.+ .+.+.++..
T Consensus 161 gtd~al~~-~~~~~i~~~~~~d~~~~~~~~i~~g~g~~~~~~g~~~~~~~~~L~~~~G~~~~~g~~~~~~~~~~~~~~~~ 239 (358)
T pfam00384 161 GTDLALAL-AGAHVFIKELKKDKDFAPKPIIIVGAGVLQRADGEAIFRAIANLADLTGNIGRPGGGWNGLNILQGAASPV 239 (358)
T ss_pred CHHHHHHH-HHHHHHHHCCCHHHHCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65999999-87999997840102236777799880642120799999999999999788788988765656678865654
Q ss_pred CCHHCCCCCCCCCCCHHHHH--HCCCEEEECCCCHHH----------CCCCCCEEEHHHHHH-HHHHHHCCEEECCCCCC
Q ss_conf 52101776586523688886--016759980764220----------166543450221166-66887455770478620
Q gi|254780859|r 500 GALDLGFVPADDTINAMNIL--DKTDIVFLLGADELD----------FSDKQALTVYIGSHG-DRGAQSADVILPGAAYT 566 (700)
Q Consensus 500 Ga~d~g~~P~~~~~~~~~~~--~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~-t~tA~~ADVVLP~a~~~ 566 (700)
|+.+++..|+.......... .+++++|+.|.||+. ..++.+|+|++|.|+ |+|+++||||||+++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~ik~l~v~~~np~~~~~~~~~~~~al~~~~~~Vv~d~~~~~~ta~~ADvVLP~~t~~ 319 (358)
T pfam00384 240 GALDLGLVPGIKSVEMINAIKKGGIKVLYLLGNNPFVTHADENRVVKALEKLDLFVVYDGHHGDKTAKYADVILPAAAYT 319 (358)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHCCEEECCCCCC
T ss_conf 43345778873189999741048951999968882203869999999975899099992588992265498997589804
Q ss_pred CCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 24720882088674204432885557407999999999
Q gi|254780859|r 567 EKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALAD 604 (700)
Q Consensus 567 Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~ 604 (700)
|++|||+|.|||+|+++|+|+|+||+||||||+++||+
T Consensus 320 E~~g~~~n~eg~~~~~~~~v~P~geak~d~~I~~~lA~ 357 (358)
T pfam00384 320 EKNGTYVNTEGRVQSTKQAVPPPGEAREDWKILRALSE 357 (358)
T ss_pred CCCCEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 03787787898026545255897447389999999718
No 40
>PRK09939 putative oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=421.33 Aligned_cols=354 Identities=18% Similarity=0.238 Sum_probs=291.3
Q ss_pred HCCCCHHHEECC--CCEEECCHHHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCC
Q ss_conf 000110110022--2202324145668887520134--453147850432323555478898636877242023344466
Q gi|254780859|r 281 VQRLDCPYARIN--GRLKPVSWDYALKAIKSAVLSS--DVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLD 356 (700)
Q Consensus 281 ~dRL~~PliR~~--g~~~~iSWdeAl~~ia~~L~~~--~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~ 356 (700)
.-||++||++.. ..++|||||||+++|+++|+.. .++..++.|+++|||++|++|+|++.+||||++.+++.|+.+
T Consensus 106 ~GRLt~Pm~~~~~~~~Y~pIsWd~Af~~Ia~~L~~l~~P~~a~FYtSgR~SNEaayl~QlfaR~~GTNN~pdCSnmCHes 185 (759)
T PRK09939 106 AGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEP 185 (759)
T ss_pred CCCCCCCEEECCCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 79988873435788865451599999999999834699774889833776669999999999986799832245440067
Q ss_pred HHHHC----CCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC------------------
Q ss_conf 43401----25467787877401857999738532257310257789997599706616850------------------
Q gi|254780859|r 357 PSYGR----ASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV------------------ 414 (700)
Q Consensus 357 ~~~~~----~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~------------------ 414 (700)
...++ +.+..+.+++|+++||+|++||.||..+||++...|++|.++|++.|++.+-+
T Consensus 186 s~v~L~~siG~G~gTv~l~D~~~aD~I~viG~Np~tnHPrml~~L~~a~~rGakII~iNPl~E~gL~rf~~Pq~p~~~l~ 265 (759)
T PRK09939 186 TSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLT 265 (759)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHCC
T ss_conf 89999986388876405888964988999845857458899999999998799589989975144554047554122215
Q ss_pred ---HHHHHHHHCCCC------------------------------CHHHHHHHHCCCCH---------------------
Q ss_conf ---122334430489------------------------------86788888268778---------------------
Q gi|254780859|r 415 ---GELRYKYEHLGN------------------------------GSEALADLVSGQHP--------------------- 440 (700)
Q Consensus 415 ---~~l~~~~~~l~~------------------------------~~e~l~~~~~g~~~--------------------- 440 (700)
+.++..+.++.. +.+++++.++|+++
T Consensus 266 ~~~t~iad~~~qvr~GgD~All~gi~k~lie~~~~a~~~~~~~~~D~~FI~~~T~Gfe~~~~~v~~~~w~~ie~~sGl~~ 345 (759)
T PRK09939 266 NSETQLASAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEWKDIERISGLSQ 345 (759)
T ss_pred CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
T ss_conf 66533433025878883799999999999966642212356674719999886532999999985089999998879799
Q ss_pred -----HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCC-------
Q ss_conf -----89998723531023544332104746989898999887410585334754246753104521017765-------
Q gi|254780859|r 441 -----FFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVP------- 508 (700)
Q Consensus 441 -----~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P------- 508 (700)
+++.+.++++.++.||+|++||.+|+++++++++|++++|++|++|.|++|++|++|+||..+||..+
T Consensus 346 ~~I~~aA~~ya~a~~~i~~w~MGiTQH~~Gv~nV~~i~NL~Ll~GnIGrpGaG~~PvRGHSNVQG~rtmGi~e~p~~~~~ 425 (759)
T PRK09939 346 TQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLRGHSNVQGDRTVGITEKPSAEFL 425 (759)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999999997478748998504200021689999999999974247999856466668867778765788789999999
Q ss_pred ------------CCCCCCHHHHH-----HCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHH----HHHHCC
Q ss_conf ------------86523688886-----016759980764220----------16654345022116666----887455
Q gi|254780859|r 509 ------------ADDTINAMNIL-----DKTDIVFLLGADELD----------FSDKQALTVYIGSHGDR----GAQSAD 557 (700)
Q Consensus 509 ------------~~~~~~~~~~~-----~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~----tA~~AD 557 (700)
..++.+..+++ ++++++|++|.|++. ++.+.+++|+++..++. +++.|
T Consensus 426 ~~l~~~~gf~~P~~~G~~~ve~i~A~~~G~ik~~~~lGGNf~~a~PDt~~~~~AL~~l~LtV~vsTkLNrsHlv~g~~a- 504 (759)
T PRK09939 426 ARLGERYGFTPPHAPGHAAIASMQAICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHS- 504 (759)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHCCCCHHHHHHHHHHCCEEEEEEEECCCCCEECCCEE-
T ss_conf 9999996899986554369999999974987689994787430289879999999728828999501254441025457-
Q ss_pred EEECCCCCCCCC----C----EEEEECCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCC--CCC----CCHHHHHHHH
Q ss_conf 770478620247----2----0882088674204432885557-40799999999980779--968----7989999999
Q gi|254780859|r 558 VILPGAAYTEKS----G----LWVNTEGRVQMGMRAIFPPGDA-KEDWEIICALADELKCS--LPF----SSLSQLRSHL 622 (700)
Q Consensus 558 VVLP~a~~~Ek~----G----tf~N~EgRvQ~~~~av~p~gea-k~dw~Il~~La~~LG~~--~~~----~~~~ei~~ei 622 (700)
+|||+.+.+|.+ | |+.|++++|+.++..++|+++. |++|+|+.+||+++--+ ++| .+.+.||++|
T Consensus 505 lILP~lgRtE~d~q~~G~q~vTvEds~~~Vh~S~G~~~P~s~~lrSE~~Iia~lA~a~lp~~~v~W~~~~~dy~~IRd~I 584 (759)
T PRK09939 505 YILPVLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQSVVAWEYLVEDYDRIRNDI 584 (759)
T ss_pred EEECCCCCCCHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHH
T ss_conf 99637876433122678722788647743645787678985121669999999998658998220777753799999999
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 9978111055422
Q gi|254780859|r 623 YSHHPHFMQLDEI 635 (700)
Q Consensus 623 ~~~~P~~~~~~~~ 635 (700)
.+.+|.|.++++.
T Consensus 585 a~vvP~f~d~n~r 597 (759)
T PRK09939 585 EAVLPEFADYNQR 597 (759)
T ss_pred HHHCCCCCCHHHH
T ss_conf 9867464445676
No 41
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=420.79 Aligned_cols=360 Identities=18% Similarity=0.232 Sum_probs=285.1
Q ss_pred CCHHHHCCCCHHHEECC--CCEEECCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 00000000110110022--22023241456688875201344-5314785043232355547889863687724202334
Q gi|254780859|r 276 WDGLKVQRLDCPYARIN--GRLKPVSWDYALKAIKSAVLSSD-VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNG 352 (700)
Q Consensus 276 ~d~~~~dRL~~PliR~~--g~~~~iSWdeAl~~ia~~L~~~~-~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~ 352 (700)
|+.-+++||++||+|.. |+|++|||||||++||++|+++. ++.+++.|++++||+.|++++|++.+||||+|..++.
T Consensus 57 ~~l~~~gRLt~Pm~r~~G~~~~~~ISWDeA~~~Ia~~L~~~~p~~~~fy~Sgr~snE~~yl~q~far~~GTnN~~~~s~~ 136 (574)
T cd02767 57 YELEHLGRLTYPMRYDAGSDHYRPISWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNM 136 (574)
T ss_pred HHHCCCCCCCCCEEECCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 44436997787764338999867723999999999999732988699984278614899999999998589988887430
Q ss_pred CCCCHHHHC----CCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC--------------
Q ss_conf 446643401----25467787877401857999738532257310257789997599706616850--------------
Q gi|254780859|r 353 EYLDPSYGR----ASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV-------------- 414 (700)
Q Consensus 353 ~~~~~~~~~----~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~-------------- 414 (700)
|+.+...+. +....+.+++|+++||+||+||.||.++||++..+|++|.++|++.|++++.+
T Consensus 137 Ch~ss~~~l~~t~G~g~~t~~~~D~~~ad~i~~~G~Np~~~hP~~~~~l~~ak~~GakiIvidP~re~gl~rf~~p~~~~ 216 (574)
T cd02767 137 CHEPSSVGLKKSIGVGKGTVSLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPE 216 (574)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCH
T ss_conf 58899999999709898898988997588899977786786889999999999888969998897505666415755420
Q ss_pred ------HHHHHHHHCCCC-------------------------CHHHHHHHHCCCCH-----------------------
Q ss_conf ------122334430489-------------------------86788888268778-----------------------
Q gi|254780859|r 415 ------GELRYKYEHLGN-------------------------GSEALADLVSGQHP----------------------- 440 (700)
Q Consensus 415 ------~~l~~~~~~l~~-------------------------~~e~l~~~~~g~~~----------------------- 440 (700)
+.++..+.++.+ +.+++++.+.|+++
T Consensus 217 ~~lt~~t~~Ad~~l~irpGtD~Al~~gi~~~lie~d~~~~~~~D~~FI~~~t~Gfee~~~~v~~~~~e~v~~~tGv~~e~ 296 (574)
T cd02767 217 SMLTGGTKIADEYFQVRIGGDIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGLSREE 296 (574)
T ss_pred HCCCCCCHHHCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCHHH
T ss_conf 00344305440440568895899999999999973654578668899987446799999998749999999886989999
Q ss_pred ---HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCC---------
Q ss_conf ---89998723531023544332104746989898999887410585334754246753104521017765---------
Q gi|254780859|r 441 ---FFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVP--------- 508 (700)
Q Consensus 441 ---~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P--------- 508 (700)
+++.+++++++++.||+|++||.+|.++++++.+|++++|++|++|+|+.|+++++|+||..+||..+
T Consensus 297 I~~~A~~~a~a~~~ii~wgmGitqh~~G~~~vrai~nL~lltGniGrpGaG~~plRGhsNvQG~r~mG~~~~~~~~~~~~ 376 (574)
T cd02767 297 IEAFAAMYAKSERVVFVWGMGITQHAHGVDNVRAIVNLALLRGNIGRPGAGLMPIRGHSNVQGDRTMGITEKPFPEFLDA 376 (574)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999998337882799644544344289999999999998557899997878788977877764457778999999999
Q ss_pred ----------CCCCCCHHHHH-----HCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHH---CCEEE
Q ss_conf ----------86523688886-----016759980764220----------166543450221166668874---55770
Q gi|254780859|r 509 ----------ADDTINAMNIL-----DKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQS---ADVIL 560 (700)
Q Consensus 509 ----------~~~~~~~~~~~-----~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~---ADVVL 560 (700)
..++.+..+++ +++|++|++|.||+. ++.+.+|+|++|.|+|+|+.+ ||+||
T Consensus 377 l~~~~g~~~P~~~G~~~~~~i~a~~~G~IKal~~~G~Np~~s~PD~~~v~~AL~kldl~V~vD~fLn~T~l~~~~~~lvL 456 (574)
T cd02767 377 LEEVFGFTPPRDPGLDTVEAIEAALEGKVKAFISLGGNFAEAMPDPAATEEALRRLDLTVHVATKLNRSHLVHGEEALIL 456 (574)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHCCCEEEEEECCCCHHCCCCCCCEEEE
T ss_conf 99973899984678679999998757996499993788654088989999999759909999573460000446751897
Q ss_pred CCCCCCCCCC--------EEEEECCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCC--CCCC----CHHHHHHHHHHH
Q ss_conf 4786202472--------0882088674204432885557-40799999999980779--9687----989999999997
Q gi|254780859|r 561 PGAAYTEKSG--------LWVNTEGRVQMGMRAIFPPGDA-KEDWEIICALADELKCS--LPFS----SLSQLRSHLYSH 625 (700)
Q Consensus 561 P~a~~~Ek~G--------tf~N~EgRvQ~~~~av~p~gea-k~dw~Il~~La~~LG~~--~~~~----~~~ei~~ei~~~ 625 (700)
|+++++|+++ |+-|..+.++.++....|..+. +++..|+..||+++--+ .+|+ +.+.||++|...
T Consensus 457 P~~~r~E~d~~~~g~q~vtve~s~~~v~~s~g~~~p~~~~l~Se~~iv~~~a~~~~~~~~~~w~~~~~~y~~ir~~i~~~ 536 (574)
T cd02767 457 PCLGRTEIDMQAGGAQAVTVEDSMSMTHTSRGRLKPASRVLLSEEAIVAGIAGARLGEAKPEWEILVEDYDRIRDEIAAV 536 (574)
T ss_pred CCCCCCCHHCCCCCCCEEEEECCCCCEEECCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 79887011103577651799768773562587678874001288899887766338999877899998899999999987
Q ss_pred CC-CCCCCCCC
Q ss_conf 81-11055422
Q gi|254780859|r 626 HP-HFMQLDEI 635 (700)
Q Consensus 626 ~P-~~~~~~~~ 635 (700)
+| .|..++..
T Consensus 537 ~~~gf~~~~~r 547 (574)
T cd02767 537 IYEGFADFNQR 547 (574)
T ss_pred HHHHHHHHHHH
T ss_conf 17779889998
No 42
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=0 Score=419.06 Aligned_cols=377 Identities=18% Similarity=0.194 Sum_probs=266.0
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEEC----CCCEEECCHHHHHH
Q ss_conf 2012116886436675159999885247888777741135542210000-000011011002----22202324145668
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARI----NGRLKPVSWDYALK 305 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~----~g~~~~iSWdeAl~ 305 (700)
.|+|.+|+.+|+|.++|+||+|++|+|++++|+|+|.||.||+.+.+.+ +|+||++||+|+ +|+|++|||||||+
T Consensus 1 tT~C~~C~~~Cgi~v~V~dGrvvkI~Gnp~hP~n~G~lCaKG~a~~~~~y~P~RL~~PLkRvG~RG~G~f~~ISWDEAld 80 (679)
T cd02763 1 TTTCYMCACRCGIRVHLRDGKVRYIKGNPDHPLNKGVICAKGSSGIMKQYSPARLTKPLLRKGPRGSGQFEEIEWEEAFS 80 (679)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCEECHHHHCCHHHHCCCCHHCCCCCCCCCCCCCCEEEECHHHHHH
T ss_conf 97778873789869999899999987189998778789950331558662986404884527898899778933999999
Q ss_pred HHHHHHCCCCCCEE---EEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCC----CCCCCCHHHHHCCCE
Q ss_conf 88752013445314---78504323235554788986368772420233444664340125----467787877401857
Q gi|254780859|r 306 AIKSAVLSSDVKLG---AVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRAS----YIFNPTIQGIEEADA 378 (700)
Q Consensus 306 ~ia~~L~~~~~~~g---~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~----~~~~~~i~die~ad~ 378 (700)
+||++|++++++.+ ++.+++ .....+...|++.|||+|++.+.+.|......+... ........|++++++
T Consensus 81 ~iA~~l~~ir~~~p~~~a~~~G~--~~~~~l~~~f~~~fGt~N~~~h~~~C~~~~~~g~~~t~G~~~~~~~~pD~~na~~ 158 (679)
T cd02763 81 IATKRLKAARATDPKKFAFFTGR--DQMQALTGWFAGQFGTPNYAAHGGFCSVNMAAGGLYSIGGSFWEFGGPDLEHTKY 158 (679)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCE
T ss_conf 99998999998498749999371--5788999999997199832367540067888776630577776678555855989
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHH---HHHHCCCCCHH--------------------HHHHHH
Q ss_conf 9997385322573102577899975997066168501223---34430489867--------------------888882
Q gi|254780859|r 379 MLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELR---YKYEHLGNGSE--------------------ALADLV 435 (700)
Q Consensus 379 illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~---~~~~~l~~~~e--------------------~l~~~~ 435 (700)
+|+||+|+.....-+...++++.++|++.|++++.....+ ..+..+.++++ ++..++
T Consensus 159 il~~G~~~~~~~~p~~~~l~~ak~~GaKlVvVDPr~t~tAa~AD~WlpIrPGTD~ALalam~hvII~eglyD~~Fv~~~T 238 (679)
T cd02763 159 FMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVPIKPGTDGAFILALAHELLKAGLIDWEFLKRYT 238 (679)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHC
T ss_conf 99988886656778999999998779979998588872378751114778996999999999999978882389999856
Q ss_pred CCCC---------------------HHHHHHHHC------------------------CCCHHHHH-HHHHHCCCCHHHH
Q ss_conf 6877---------------------889998723------------------------53102354-4332104746989
Q gi|254780859|r 436 SGQH---------------------PFFKKLQEA------------------------TRPLIIVG-QGALRASDNVEVM 469 (700)
Q Consensus 436 ~g~~---------------------~~~~~l~~a------------------------~~~~ii~G-~g~~~~~~g~~~~ 469 (700)
.+.+ .++++++.+ .+++.++. .|+.+|.+|.++.
T Consensus 239 na~~Lv~ytPewa~~itGvpA~~I~~lA~Ela~~a~~~~~~l~~~w~d~~G~~~~~~~grpvs~~~mrGv~~H~nGf~~~ 318 (679)
T cd02763 239 NAAELVDYTPEWVEKITGIPADTIRRIAKELGVTARDQPIELPIAWTDVWGRKHEKITGRPVSFHAMRGIAAHSNGFQTI 318 (679)
T ss_pred CCHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf 83676155988873401988788999999999876655300337777651432210047513432111032235538999
Q ss_pred HHHHHHHHHHHCCCCCCCCCC------CCCCCC---CCCCC---------HHCCC--CCCC-----CC------------
Q ss_conf 898999887410585334754------246753---10452---------10177--6586-----52------------
Q gi|254780859|r 470 ANIAKLVIDVGGISDSWNGFA------VLHTVA---SRVGA---------LDLGF--VPAD-----DT------------ 512 (700)
Q Consensus 470 ~al~~l~~~~G~ig~~g~G~~------~L~~~~---n~~Ga---------~d~g~--~P~~-----~~------------ 512 (700)
+++..|.+++|+++++|+... ++.... +.... ..+|. .|.+ .+
T Consensus 319 rAi~~L~aLlGni~~pGG~~~~~~y~~~~~~~~~~~~~~~~~~p~~~~~g~~lg~~~~p~d~~~d~~G~P~ridka~~we 398 (679)
T cd02763 319 RALFVLMMLLGTIDRPGGFRHKPPYPRHIPPLPKPPKIPSADKPFTPLYGPPLGWPASPDDLLVDEDGNPLRIDKAYSWE 398 (679)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999999838787888524588888777877777776333588876667766776672554212368845533222222
Q ss_pred --CC---HH-HHH--------HCCCEEEECCCCHH-----------HCC--------CCCCEEEHHHHHHHHHHHHCCEE
Q ss_conf --36---88-886--------01675998076422-----------016--------65434502211666688745577
Q gi|254780859|r 513 --IN---AM-NIL--------DKTDIVFLLGADEL-----------DFS--------DKQALTVYIGSHGDRGAQSADVI 559 (700)
Q Consensus 513 --~~---~~-~~~--------~~~~~l~~~g~d~l-----------~~~--------~~~~fvV~~d~~~t~tA~~ADVV 559 (700)
.. .+ +++ -.+|+++++.+|++ +.+ .+.+|+|++|.|+|||+.|||+|
T Consensus 399 ~Plaa~gl~~~vi~~a~~G~PY~Ik~L~~~~aN~~w~s~~n~~~v~~~L~d~d~~g~~KipfIVv~D~f~SETa~yADlI 478 (679)
T cd02763 399 YPLAAHGCMQNVITNAWRGDPYPIDTLMIYMANMAWNSSMNTPEVREMLTDKDASGNYKIPFIIVCDAFYSEMVAFADLV 478 (679)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHCCEE
T ss_conf 65310315777777763079866214446313532136888288998744113342435776999826667056527387
Q ss_pred ECCCCCCCCCCEEEEECCEEEEE--------CCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 04786202472088208867420--------443288555740799999999980779
Q gi|254780859|r 560 LPGAAYTEKSGLWVNTEGRVQMG--------MRAIFPPGDAKEDWEIICALADELKCS 609 (700)
Q Consensus 560 LP~a~~~Ek~Gtf~N~EgRvQ~~--------~~av~p~geak~dw~Il~~La~~LG~~ 609 (700)
||.+||+|+.|.+.|.+++++.. .|+|+|.+|+|+.|+|+.+|+.|||++
T Consensus 479 LPdTTyLERwd~~s~~dr~~~~~~~~~~~ir~p~~~p~~~~r~~~~~~~~l~~rl~~~ 536 (679)
T cd02763 479 LPDTTYLERHDAMSLLDRPISEADGPVDAIRVPIVEPKGDVKPFQEVLIELGTRLGLP 536 (679)
T ss_pred ECCCCHHHHCCCHHCCCCCCCCCCCCCHHEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 0477502002631103687654557312000344588877651899999999874998
No 43
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=400.32 Aligned_cols=382 Identities=17% Similarity=0.121 Sum_probs=256.5
Q ss_pred EECCCCCCCCCEEE-EECCCCEEEEEECCCC---CCCCCCEECCCCCCCCCHH-HHCCCCHHHEECC--------CCEEE
Q ss_conf 20121168864366-7515999988524788---8777741135542210000-0000110110022--------22023
Q gi|254780859|r 231 DSIDVMDALGSAIR-IDARGCEVMRILPRIN---ESINEEWISDKTRFIWDGL-KVQRLDCPYARIN--------GRLKP 297 (700)
Q Consensus 231 ~SvC~~C~~GC~i~-v~v~~g~i~rv~~~~~---~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~--------g~~~~ 297 (700)
||+|.+|+.||+|. +.|+||+|++|+|+++ +++|+|.||.||+.+.+.+ +|+||++||+|+| |+|++
T Consensus 1 PT~C~mC~~~Cgi~~v~V~dGkvv~IeGnp~~~~~hp~~G~lCaKG~a~~~~~Y~PdRLk~PLkRvgpk~G~~~egkf~e 80 (760)
T cd02760 1 PTYCYNCVAGPDFMAVKVVDGVATEIEPNFAAEDIHPARGRVCVKAYGLVQKTYNPNRVLQPMKRTNPKKGRNEDPGFVP 80 (760)
T ss_pred CCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHCCHHHHCCCCEECCCCCCCCCCCCEEE
T ss_conf 97077753679813899789989999768877778999822996445517746090251468170588998878898898
Q ss_pred CCHHHHHHHHHHHHCCCCCCE-----E------EEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHH--HCCCC
Q ss_conf 241456688875201344531-----4------7850432323555478898636877242023344466434--01254
Q gi|254780859|r 298 VSWDYALKAIKSAVLSSDVKL-----G------AVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSY--GRASY 364 (700)
Q Consensus 298 iSWdeAl~~ia~~L~~~~~~~-----g------~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~--~~~~~ 364 (700)
|||||||++||++|++++++. | .+.++.........+..|+.++|++|+...+..+...... ..+.+
T Consensus 81 ISWDEAld~IA~kLk~ir~~~~~~~~g~~~~~a~~g~g~~~~~~~~~~~~f~~a~Gt~n~~~~~~~~~~~~~~~~~~g~~ 160 (760)
T cd02760 81 ISWDEALDLVAAKLRRVREKGLLDEKGLPRLAATFGHGGTPAMYMGTFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEF 160 (760)
T ss_pred EEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCC
T ss_conf 66999999999999999985387641010356887148861567899999999518982302246520326788876310
Q ss_pred C--CCCCHHHHHCCCEEEEECCCCCC-CCCCHHHHHHHHHHCCCCEEECCCCCHHHHHH---HHCCCCC-----------
Q ss_conf 6--77878774018579997385322-57310257789997599706616850122334---4304898-----------
Q gi|254780859|r 365 I--FNPTIQGIEEADAMLIIGSNPRL-EAAVLNARIRKRWRRGNFPIAVIGDVGELRYK---YEHLGNG----------- 427 (700)
Q Consensus 365 ~--~~~~i~die~ad~illiG~Np~~-~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~---~~~l~~~----------- 427 (700)
+ ......|++++++||+||+|+.. .+|+...++.++..+|++.|+++++....+.. +..+.+|
T Consensus 161 ~~~~~~~~~D~~~ak~il~~G~N~~~~~~p~~~~~~~~ak~rGaKiVvVDPR~S~tAa~ADeWlPIrPGTD~AL~LAmih 240 (760)
T cd02760 161 WHRAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMIH 240 (760)
T ss_pred CCCCCCCCCHHHHCCEEEEECCCHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCEECCCCCCCHHHHHHHHHH
T ss_conf 04788767223440768998778446338189999999998899899989879857898580457779958999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780859|r 428 -------------------------------------------------------------------------------- 427 (700)
Q Consensus 428 -------------------------------------------------------------------------------- 427 (700)
T Consensus 241 VII~E~~~g~~D~~FL~~~TNaP~LV~~Dg~~lrd~~~gkplv~D~~~g~~~~~d~~~~~p~l~g~~~~~g~~~~~~~~~ 320 (760)
T cd02760 241 VMVHEQGLGKLDVPFLRDRTSSPYLVGPDGLYLRDAATGKPLVWDERSGRAVPFDTRGAVPAVAGDFAVDGAVSVDADDE 320 (760)
T ss_pred HHHHCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99844656742579997424785356466442345456895368878895223567776710046623455323333333
Q ss_pred ------------HHHHHHHHCCCCH----------------HHHHHHHCC---------------CC-HHHHHHHHHHCC
Q ss_conf ------------6788888268778----------------899987235---------------31-023544332104
Q gi|254780859|r 428 ------------SEALADLVSGQHP----------------FFKKLQEAT---------------RP-LIIVGQGALRAS 463 (700)
Q Consensus 428 ------------~e~l~~~~~g~~~----------------~~~~l~~a~---------------~~-~ii~G~g~~~~~ 463 (700)
++.|++.+..+++ ++++++++. +| .+..|.|+..|.
T Consensus 321 ~~~~~g~~~~t~F~~L~e~~~~YTPEwaaeitGIpA~~IrrlArE~a~~A~~~~~i~i~g~~~~~RPvav~~~rgis~h~ 400 (760)
T cd02760 321 TAIHQGVEGTTAFTMLVEHMRKYTPEWAESICDVPAATIRRIAREFLENASIGSTIEVDGVTLPYRPVAVTLGKSVNNGW 400 (760)
T ss_pred CCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCCCCC
T ss_conf 22347842101999999987615999987655969999999999998533346636632532256753898233200023
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCC--C--CCCCCCC--------CCHHCCC---------------------CCCC
Q ss_conf 7469898989998874105853347542--4--6753104--------5210177---------------------6586
Q gi|254780859|r 464 DNVEVMANIAKLVIDVGGISDSWNGFAV--L--HTVASRV--------GALDLGF---------------------VPAD 510 (700)
Q Consensus 464 ~g~~~~~al~~l~~~~G~ig~~g~G~~~--L--~~~~n~~--------Ga~d~g~---------------------~P~~ 510 (700)
+|.++.+++..|..++|+++++|+.+.. - .++.+.. |...-+. .|..
T Consensus 401 ng~q~~rAi~iL~~LlG~i~~pGG~~g~~~~~~~p~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~ 480 (760)
T cd02760 401 GAFECCWARTLLATLVGALEVPGGTLGTTVRLNRPHDDRLASVKPGEDGFMAQGFNPTDKEHWVVKPTGRNAHRTLVPIV 480 (760)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 62788999999999838466888746667777888765445557764455567778876656777874323454457555
Q ss_pred C--------CCC---HHHH-----------HHCCCEEEECCCCHHH----------CCCCCCEEEHHHHHHHHHHHHCCE
Q ss_conf 5--------236---8888-----------6016759980764220----------166543450221166668874557
Q gi|254780859|r 511 D--------TIN---AMNI-----------LDKTDIVFLLGADELD----------FSDKQALTVYIGSHGDRGAQSADV 558 (700)
Q Consensus 511 ~--------~~~---~~~~-----------~~~~~~l~~~g~d~l~----------~~~~~~fvV~~d~~~t~tA~~ADV 558 (700)
. +.. .+.+ -..++++|++..||.. ...+.+|+|++|.+++||+.||||
T Consensus 481 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~Py~id~~~~~~~Np~~s~~n~~~~~e~~~klpfIV~~D~y~sETa~yADl 560 (760)
T cd02760 481 GNSAWSQALGPTQLAWMFLREVPLDWKFELPTLPDVWFNYRTNPAISFWDTATLVDNIAKFPFTVSFAYTEDETNWMADV 560 (760)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHCCE
T ss_conf 53222344564421213553144444557897750899976774535668889999985699599987887867773217
Q ss_pred EECCCCCCCCCCEEEEE-----CCE--EE---EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 70478620247208820-----886--74---20443288555740799999999980779968
Q gi|254780859|r 559 ILPGAAYTEKSGLWVNT-----EGR--VQ---MGMRAIFPPGDAKEDWEIICALADELKCSLPF 612 (700)
Q Consensus 559 VLP~a~~~Ek~Gtf~N~-----EgR--vQ---~~~~av~p~geak~dw~Il~~La~~LG~~~~~ 612 (700)
|||.+||+|+....-.. |.. .+ ...|+|+|.+++|++|+|+.+||.|||+.-.|
T Consensus 561 VLPdtTyLER~d~is~~~~~~~e~~~~~~~~~ir~PvveP~~d~r~f~~v~~eL~~rlGl~~~~ 624 (760)
T cd02760 561 LLPEATDLESLQMIKVGGTKFVEQFWEHRGVVLRQPAVEPQGEARDFTWISTELAKRTGLLADY 624 (760)
T ss_pred ECCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 2166650532045864698667676432440100554377988870899999999985972778
No 44
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; InterPro: IPR011888 Many bacterial species are capable of anaerobic growth by using dimethylsulphoxide (DMSO) as the terminal electron acceptor, with DMSO reductase as the terminal elctron transfer enzyme. In Escherichia coli and many other Gram-negative bacteria DMSO reductase is a membrane-bound enzyme composed of three subunits; a catalytic molybdenum-containing subunit (DmsA), an electron transfer subunit containing a [4Fe-4S] cluster (DmsB), and a hydrophobic membrane-spanning anchor subunit which attaches the enzyme to the cytoplasmic membrane (DmsC) , . It is generally thought now that DmsAB faces the periplasm, contradicting previous results suggesting a cytoplasmic location. The N-terminal region of DmsA contains a "twin-arginine" signal sequence, suggesting export to the periplasm occurs via the TAT secretion pathway. This entry represents known and predicted bacterial DmsA polypeptides. Several species contain one or more paralogs of DmsA. In E. coli, the two paralogs of DmsA, YnfE and YnfF, are encoded within the ynfEFGHI operon . YnfE and YnfF cannot form a functional complex with DmsBC, but YnfFGH can restore growth on DMSO when DmABC is deleted. The function of YnfE is not known and it appears to prevent formation of the YnfFGH complex if present.; GO: 0009389 dimethyl sulfoxide reductase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=100.00 E-value=0 Score=389.78 Aligned_cols=416 Identities=19% Similarity=0.237 Sum_probs=290.2
Q ss_pred CCCCEEEEEECC-CCCCCCCEEEEECCCCEEEEEECCCCCCC-------CCCEECCCCCCC-CCHHHHCCCCHHHEECC-
Q ss_conf 443023522012-11688643667515999988524788877-------774113554221-00000000110110022-
Q gi|254780859|r 223 RSWELTKTDSID-VMDALGSAIRIDARGCEVMRILPRINESI-------NEEWISDKTRFI-WDGLKVQRLDCPYARIN- 292 (700)
Q Consensus 223 Rpwel~~~~SvC-~~C~~GC~i~v~v~~g~i~rv~~~~~~~v-------N~g~lC~KGRf~-~d~~~~dRL~~PliR~~- 292 (700)
|+=| +.+=|-| ..||..|.|+++|+||+|.||+-++++.. .+-+-|.|||-. ..-+|||||++||+|+|
T Consensus 41 ~~~E-~~~wsaC~vNCGSrCplr~hV~dG~i~~ieTrPDn~~dD~~~g~HQvRAC~RGRS~R~rvY~PDRLkYPmkRVGK 119 (849)
T TIGR02166 41 RPDE-KVVWSACTVNCGSRCPLRVHVKDGEITRIETRPDNTGDDEYGGNHQVRACLRGRSLRRRVYNPDRLKYPMKRVGK 119 (849)
T ss_pred CCCC-CEEEEEEEEECCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 6665-379876532068888635787657689841586533243358865561034654213200487534574000145
Q ss_pred ---CCEEECCHHHHHHHHHHHHCCCCCCEE----------EEECCCCCC--HHHHHHHHHHHHCCCCCEECCCC------
Q ss_conf ---220232414566888752013445314----------785043232--35554788986368772420233------
Q gi|254780859|r 293 ---GRLKPVSWDYALKAIKSAVLSSDVKLG----------AVVGDLSSV--EEIYALKLLMQSLGCENFDCRQN------ 351 (700)
Q Consensus 293 ---g~~~~iSWdeAl~~ia~~L~~~~~~~g----------~~~g~~~t~--Ee~y~~k~l~~~lGt~nid~~~~------ 351 (700)
|||++||||||+++||++|+++.++|| +..|+..|- ..+-++++|++.+|. .++.+.+
T Consensus 120 RGEGKF~RISWdEA~~~IA~~Lk~~~~~YGN~aiY~~YGTG~~GG~~~~~~~~~~~~~Rllnl~GG-yL~~Yg~YS~Aqi 198 (849)
T TIGR02166 120 RGEGKFERISWDEATDTIADNLKRIIEKYGNEAIYVNYGTGTLGGTMSRSKPPATLVARLLNLCGG-YLNQYGSYSTAQI 198 (849)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEECCCCCCCHHHHHHHHCCC-CHHHCCCCCHHHH
T ss_conf 346556655779999999987788887518824786300000112231478853189999974276-0012477057889
Q ss_pred CCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCC---CCHHHHHHHHHHC--CCCEEECCCCCHHHH----HHHH
Q ss_conf 444664340125467787877401857999738532257---3102577899975--997066168501223----3443
Q gi|254780859|r 352 GEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEA---AVLNARIRKRWRR--GNFPIAVIGDVGELR----YKYE 422 (700)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~---Pvl~~rirka~~~--g~~~I~vi~~~~~l~----~~~~ 422 (700)
.+.+...+ +...-++++++|+|||+||+||.||.|+- .-....+.||..+ +++.|+++|+.+|.. ..+.
T Consensus 199 ~~~~~y~Y--G~~~~g~s~~~i~~skLvv~fG~NP~ETRmSGGG~~y~~~~A~~~ns~a~~I~iDPRYtDt~ag~~deWi 276 (849)
T TIGR02166 199 NEALPYTY--GASADGSSLDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKNSNAKVIVIDPRYTDTVAGREDEWI 276 (849)
T ss_pred HHHHHHCC--CCCCCCCCHHHHHCCCEEEEECCCCHHEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCC
T ss_conf 97765336--5013678678751387689815781020322786045689999752386189975888720323014786
Q ss_pred CCCCCHH-----------------------H-------------------------------------------------
Q ss_conf 0489867-----------------------8-------------------------------------------------
Q gi|254780859|r 423 HLGNGSE-----------------------A------------------------------------------------- 430 (700)
Q Consensus 423 ~l~~~~e-----------------------~------------------------------------------------- 430 (700)
-+.++|+ +
T Consensus 277 PI~PGTDAALv~A~ayVlI~EGwvnl~D~~FLd~YCVGfD~~tLPklvaefta~saP~ktqylPyidvN~sY~~YilG~G 356 (849)
T TIGR02166 277 PIRPGTDAALVAAIAYVLISEGWVNLHDKAFLDRYCVGFDEKTLPKLVAEFTAASAPKKTQYLPYIDVNGSYKDYILGEG 356 (849)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCCEECCCCCHHHHCCCCC
T ss_conf 78877258999998887551773253267778641456785367899987403678112122541200544333201466
Q ss_pred -----------HHHHHCCCC-----HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -----------888826877-----8899987235310235443321047469898989998874105853347542467
Q gi|254780859|r 431 -----------LADLVSGQH-----PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHT 494 (700)
Q Consensus 431 -----------l~~~~~g~~-----~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~ 494 (700)
+++-+.|.. .+|+++.++|.+.|+.|+|+++|.+|.++.+++..|+.+|||+|..|+.-....+
T Consensus 357 kf~D~~~KTPeWA~~ITgipa~~I~~LAreig~aKpa~I~QGWG~QR~aNGE~a~Rai~mL~~lTGnvG~~Gg~~GA~eg 436 (849)
T TIGR02166 357 KFADGTEKTPEWASKITGIPADTIIKLAREIGNAKPAFISQGWGPQRHANGEQAARAIAMLALLTGNVGIKGGNNGAREG 436 (849)
T ss_pred CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 25788857857874625888789999998741235278642886431146678999999988761543667766454575
Q ss_pred CCCC--CC--------------------CHHCC--CCCCCCCCCHHHHHH-----CCCEEEECCCCHHH-----------
Q ss_conf 5310--45--------------------21017--765865236888860-----16759980764220-----------
Q gi|254780859|r 495 VASR--VG--------------------ALDLG--FVPADDTINAMNILD-----KTDIVFLLGADELD----------- 534 (700)
Q Consensus 495 ~~n~--~G--------------------a~d~g--~~P~~~~~~~~~~~~-----~~~~l~~~g~d~l~----------- 534 (700)
..+. .+ |.+-| ..+..++++..+.|+ .+|+||.+++|-|-
T Consensus 437 ~~~~~~~~~~~~~dNPvk~sIS~F~WtdAI~~G~emTa~~dGvrg~~KLd~PlGa~IK~~wn~agN~LiNQHSD~N~T~~ 516 (849)
T TIGR02166 437 SYSLPFARMPELPDNPVKTSISCFLWTDAIERGTEMTAIKDGVRGKDKLDSPLGANIKFLWNYAGNCLINQHSDINRTAK 516 (849)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHCCCCCCHHHCCCCCCCHHEEEECCCCEEEECCCCCCCHHH
T ss_conf 20101255788888876443664427889725665671234787705525777874301012115717833854212121
Q ss_pred CC---CCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCE----EEE-ECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 16---65434502211666688745577047862024720----882-08867420443288555740799999999980
Q gi|254780859|r 535 FS---DKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGL----WVN-TEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 535 ~~---~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gt----f~N-~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
.+ .+-+|+|+.|.|||..|+|||++||.+|+.|++.. |.. .-+-+-..+++|+|.+|.|+.++++++||+||
T Consensus 517 IL~De~kCE~IVv~d~~MT~SAkYADilLPD~t~~E~~D~~~~~~a~g~~~Yli~~~~~i~P~fEck~~Y~~~~e~A~rL 596 (849)
T TIGR02166 517 ILEDESKCELIVVIDNHMTSSAKYADILLPDTTTLEQEDLIEDSYASGNMSYLIFMQKAIEPLFECKPIYDMLSEVAKRL 596 (849)
T ss_pred HHCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHEEEHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 20574402256652452585033443210131067667532122234555341010100375654166689999999870
Q ss_pred C--CCCCCC---CH----HHHHHHHHH--HCCCCC-CCCCCCCCCCCC
Q ss_conf 7--799687---98----999999999--781110-554224221123
Q gi|254780859|r 607 K--CSLPFS---SL----SQLRSHLYS--HHPHFM-QLDEIRPSATDG 642 (700)
Q Consensus 607 G--~~~~~~---~~----~ei~~ei~~--~~P~~~-~~~~~~~~~~~~ 642 (700)
| +.-.|. +. +.+.+.+.+ .-|+|- .+++.++...++
T Consensus 597 G~~~~~~FTEGrtq~~Wle~lY~qtr~~~~~P~LPn~f~e~~k~G~~~ 644 (849)
T TIGR02166 597 GGEVEAEFTEGRTQEEWLEHLYAQTRAADKDPALPNSFAELRKQGIYK 644 (849)
T ss_pred CCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEE
T ss_conf 851244336880279999999999886157888778879995177310
No 45
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=378.31 Aligned_cols=393 Identities=18% Similarity=0.193 Sum_probs=268.9
Q ss_pred EECCCCCCCCCEEEEECCC--CEEEEEECCCCCCCC---------------------------CCEECCCCCCCCCHH-H
Q ss_conf 2012116886436675159--999885247888777---------------------------741135542210000-0
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARG--CEVMRILPRINESIN---------------------------EEWISDKTRFIWDGL-K 280 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~--g~i~rv~~~~~~~vN---------------------------~g~lC~KGRf~~d~~-~ 280 (700)
-|+|.+|..+|+|+|.|.+ |+|+||.|++.||+| +|.||.||+.+.+.+ +
T Consensus 1 yS~C~~C~~~CGi~v~V~~~~g~v~kI~GNP~hP~n~~~~~~~~~~~~~~~~~~~~~~~~~~~RG~lCaKG~a~~~~~y~ 80 (735)
T cd02758 1 YSSCLGCWTQCGIRVRVDKETGKVLRIAGNPYHPLNTAPSLPYNTPLKESLYLSLVGENGLKARATACARGNAGLQYLYD 80 (735)
T ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 97257874778828999668998999768999976566565434432000001222223558871489265663765509
Q ss_pred HCCCCHHHEECC----CCEEECCHHHHHHHHHHHHC-----------CCCC----------CEE------EEECCCCCCH
Q ss_conf 000110110022----22023241456688875201-----------3445----------314------7850432323
Q gi|254780859|r 281 VQRLDCPYARIN----GRLKPVSWDYALKAIKSAVL-----------SSDV----------KLG------AVVGDLSSVE 329 (700)
Q Consensus 281 ~dRL~~PliR~~----g~~~~iSWdeAl~~ia~~L~-----------~~~~----------~~g------~~~g~~~t~E 329 (700)
|+||++||+|++ |+|++|||||||++||++++ .+++ ++| ++.++....
T Consensus 81 PdRL~~PLKRvG~RGeGkwe~ISWDEAl~eIAekg~l~~e~~~~~lk~ir~~~~~id~~~peyGp~sn~l~~~~g~~~g- 159 (735)
T cd02758 81 PYRVLQPLKRVGPRGSGKWKPISWEQLIEEVVEGGDLFGEGHVEGLKAIRDLDTPIDPDHPDLGPKANQLLYTFGRDEG- 159 (735)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCC-
T ss_conf 0021778342899989905895699999999961530000002456776520134564444447542059999268840-
Q ss_pred HHHHHHHHH-HHCCCCCEECCCCCCCCCHHHHCCCCCC-----CCCHHHHHCCCEEEEECCCCCCCCCCHH---HHHHHH
Q ss_conf 555478898-6368772420233444664340125467-----7878774018579997385322573102---577899
Q gi|254780859|r 330 EIYALKLLM-QSLGCENFDCRQNGEYLDPSYGRASYIF-----NPTIQGIEEADAMLIIGSNPRLEAAVLN---ARIRKR 400 (700)
Q Consensus 330 e~y~~k~l~-~~lGt~nid~~~~~~~~~~~~~~~~~~~-----~~~i~die~ad~illiG~Np~~~~Pvl~---~rirka 400 (700)
..+.+++|+ +.+||+|+..+.+.|......+...+.. .....|++++++||+||+||.+.++... .++.++
T Consensus 160 ~~~~~~rf~~~a~Gs~N~~~h~~~C~~~~~~g~~~~~g~~~~~~~~~pD~~nak~il~~G~Np~ea~~~~~~~~~~l~~~ 239 (735)
T cd02758 160 RTPFIKRFANQAFGTVNFGGHGSYCGLSYRAGNGALMNDLDGYPHVKPDFDNAEFALFIGTSPAQAGNPFKRQARRLAEA 239 (735)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCEEEEECCCHHHHCCCHHHHHHHHHHH
T ss_conf 78999999998469984157744105689999988607877787787714259589998179778278647689999999
Q ss_pred HHCCCCEEECCCCC-HHHHH------HHHCCCCCHHH-------------------------------------------
Q ss_conf 97599706616850-12233------44304898678-------------------------------------------
Q gi|254780859|r 401 WRRGNFPIAVIGDV-GELRY------KYEHLGNGSEA------------------------------------------- 430 (700)
Q Consensus 401 ~~~g~~~I~vi~~~-~~l~~------~~~~l~~~~e~------------------------------------------- 430 (700)
.++++.++++++|+ ...+. .+..+.++++.
T Consensus 240 ~~~~gaKiVVVDPR~s~ta~~Ad~a~~WlpIrPGTD~ALaLaMi~~II~n~lYD~~FL~~~~~~a~~~~g~~~~tnat~L 319 (735)
T cd02758 240 RTEGNFKYVVVDPVLPNTTSAAGENIRWVPIKPGGDGALAMAMIRWIIENERYNAEYLSIPSKEAAKAAGEPSWTNATHL 319 (735)
T ss_pred HHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCCCCCCCCE
T ss_conf 87299879998998887256653157464888896999999999999977864689881423656864188665787321
Q ss_pred ------------HHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf ------------888826877----------------8899987235310235443321047469898989998874105
Q gi|254780859|r 431 ------------LADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGI 482 (700)
Q Consensus 431 ------------l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~i 482 (700)
|++.+..++ ++++++.++.+.+++.+.|..+|.+|.++.+++..|.+++||+
T Consensus 320 v~~~~vks~f~~Lke~~~~~Tpe~~AeitGVpa~~I~~lArEfas~g~~~~~~~~G~~~h~nG~~~~rAi~~Ln~L~Gn~ 399 (735)
T cd02758 320 VITVRVKSALQLLKEEAFSYSLEEYAEICGVPEAKIIELAKEFTSHGRAAAVVHHGGTMHSNGFYNAYAIRMLNALIGNL 399 (735)
T ss_pred ECEEEECCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 11034041999999999855999999886989999999999998318746995556203576389999999999984878
Q ss_pred CCCCCCCCCCCCCC--CCCC-CHHCCC-----------------------------------CCC-------CCCCCHHH
Q ss_conf 85334754246753--1045-210177-----------------------------------658-------65236888
Q gi|254780859|r 483 SDSWNGFAVLHTVA--SRVG-ALDLGF-----------------------------------VPA-------DDTINAMN 517 (700)
Q Consensus 483 g~~g~G~~~L~~~~--n~~G-a~d~g~-----------------------------------~P~-------~~~~~~~~ 517 (700)
+.+|+.... .+.. +..| ..++.. .|. ..+. ..+
T Consensus 400 ~~~GG~~~~-~~~~~~~~~~p~~~~~~~~~~~~p~g~~i~r~~~~ye~s~e~~~~~~~g~~~yPa~~pw~p~~~~~-~~e 477 (735)
T cd02758 400 NWKGGLLMS-GGGFADNSAGPRYDFKKFFGEVKPWGVPIDRSKKAYEKTSEYKRKVAAGENPYPAKRPWYPLTPEL-YTE 477 (735)
T ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCH-HHH
T ss_conf 998772568-888888778877654447788778887676666530012144310120557887567766477630-678
Q ss_pred HH----H----CCCEEEECCCCHHH-----------CC---CCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEE-
Q ss_conf 86----0----16759980764220-----------16---65434502211666688745577047862024720882-
Q gi|254780859|r 518 IL----D----KTDIVFLLGADELD-----------FS---DKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVN- 574 (700)
Q Consensus 518 ~~----~----~~~~l~~~g~d~l~-----------~~---~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N- 574 (700)
++ + .+|++|++..||+- .+ ++.+|+|++|.|++||+.|||+|||.++|+|+-|.-..
T Consensus 478 ~l~~a~~g~PY~ikal~~~~~Np~~~~~~~~~~~~e~LkD~~klpliV~~D~~~~ETa~yADyILPDtt~lErw~~~~~~ 557 (735)
T cd02758 478 VIASAAEGYPYKLKALILWMANPVYGAPGLVKQVEEKLKDPKKLPLFIAIDAFINETSAYADYIVPDTTYYESWGFSTPW 557 (735)
T ss_pred HHHHHHHCCCCCCEEEEECCCCHHHCCCCCHHHHHHHHCCHHHCCEEEEEECCCCHHHHHCCEEECCCCCCCCCCCCCCC
T ss_conf 88888748985735887715578660888679999984584028969998578676677386861563550335578875
Q ss_pred --ECCEEEEE-CCCCCCC------CCCCHHHHHHHHHHHHHCCC-C-------------CCCCHHHHHHHHHHHC
Q ss_conf --08867420-4432885------55740799999999980779-9-------------6879899999999978
Q gi|254780859|r 575 --TEGRVQMG-MRAIFPP------GDAKEDWEIICALADELKCS-L-------------PFSSLSQLRSHLYSHH 626 (700)
Q Consensus 575 --~EgRvQ~~-~~av~p~------geak~dw~Il~~La~~LG~~-~-------------~~~~~~ei~~ei~~~~ 626 (700)
...+.+.. .|+|+|+ |+.+.-+.++.+||++||++ | +.++.+|..-.+++..
T Consensus 558 ~~~~~~~~~~r~P~v~p~~~~~~~g~~~~~e~~~i~~a~~l~lpGfG~~a~~~~~g~~~~l~~~ed~yl~~~aN~ 632 (735)
T cd02758 558 GGVPTKASTARWPVIAPLTEKTANGHPVSMESFLIDLAKALGLPGFGPNAIKDGQGNKFPLNRAEDYYLRVAANI 632 (735)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 787513421332653688553779857009999999999849998784546688888678899999999999988
No 46
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit; InterPro: IPR010051 This entry represents the large subunit of a family of nitrate reductases found in proteobacteria which are localised to the periplasm. This subunit binds molybdopterin and contains a twin-arginine motif at the N terminus. The protein associates with NapB, a soluble haem-containing protein and NapC, a membrane-bound cytochrome c. The periplasmic nitrate reductases are not involved in the assimilation of nitrogen, and are not directly involved in the formation of electrochemical gradients (i.e. respiration) either. Rather, the purpose of this enzyme is either dissimilatory (i.e. to dispose of excess reductive equivalents) or indirectly respiratory by virtue of the consumption of electrons derived from NADH via the proton translocating NADH dehydrogenase. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterised. In Escherichia coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).; GO: 0008940 nitrate reductase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding, 0042128 nitrate assimilation.
Probab=100.00 E-value=0 Score=367.32 Aligned_cols=395 Identities=19% Similarity=0.260 Sum_probs=300.7
Q ss_pred EEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEEC--------CCCEEEC
Q ss_conf 35220121168864366751599998852478887777411355422100000-00011011002--------2220232
Q gi|254780859|r 228 TKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARI--------NGRLKPV 298 (700)
Q Consensus 228 ~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~--------~g~~~~i 298 (700)
+=-+..|.+||.||+|.|.+++|+|+-..|++.-|||+|.-|.||-|.-..++ .|||+.||+|. +|+|.+|
T Consensus 41 ~W~KApCRFCGTGCgv~v~~~~g~vVAt~GDp~A~VN~GLNCiKGYFl~KIMYG~DRL~~PLlR~k~~G~y~K~G~F~pv 120 (930)
T TIGR01706 41 KWDKAPCRFCGTGCGVLVGVKDGRVVATQGDPEAPVNRGLNCIKGYFLSKIMYGQDRLTQPLLRMKDKGKYDKDGEFTPV 120 (930)
T ss_pred EECCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32455553136885168874167278606888773005764100000240331630114640000247741337762410
Q ss_pred CHHHHHHHHHHHHCCCC-----CCEEEEECCCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCC------HHHHCCCCCC
Q ss_conf 41456688875201344-----531478504323235554788986-36877242023344466------4340125467
Q gi|254780859|r 299 SWDYALKAIKSAVLSSD-----VKLGAVVGDLSSVEEIYALKLLMQ-SLGCENFDCRQNGEYLD------PSYGRASYIF 366 (700)
Q Consensus 299 SWdeAl~~ia~~L~~~~-----~~~g~~~g~~~t~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~------~~~~~~~~~~ 366 (700)
|||+|+|..++++|..- ..+|.++|++.|.-|.|+..||++ .|-|||||=.++-|..+ .++|...+
T Consensus 121 ~W~~AFD~M~~~~K~~l~~kGp~~~g~fgsgQwTi~EGYAA~KL~kAGFRsNNiDPNARHCMASA~~gFMrTFG~DEP-- 198 (930)
T TIGR01706 121 SWDQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWEGYAALKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEP-- 198 (930)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--
T ss_conf 478899999999999997349827986237520020117899997546654778865557899999998875388898--
Q ss_pred CCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCC--CCEEECCC-----------------CCHHH---HHHHHCC
Q ss_conf 78787740185799973853225731025778999759--97066168-----------------50122---3344304
Q gi|254780859|r 367 NPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRG--NFPIAVIG-----------------DVGEL---RYKYEHL 424 (700)
Q Consensus 367 ~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g--~~~I~vi~-----------------~~~~l---~~~~~~l 424 (700)
...++|+|.||++++||+|.+|=||||++||-.+.+.. ..+|++.. |.+|| +|...++
T Consensus 199 ~GCYDD~E~aDafvlWG~NMAEMHPiLW~Rv~dRrLs~~~~v~V~vLSTf~~R~~~lAD~~iiF~P~~DLai~NyIA~~I 278 (930)
T TIGR01706 199 MGCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSNHPKVKVVVLSTFTHRSFDLADIGIIFKPQTDLAILNYIANYI 278 (930)
T ss_pred CCCCHHHHHCCCEEECCCCHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 87501044206244314321220420220002100377884168986312332022227740235884177888899887
Q ss_pred -CCC----------------------------------------------------------------------------
Q ss_conf -898----------------------------------------------------------------------------
Q gi|254780859|r 425 -GNG---------------------------------------------------------------------------- 427 (700)
Q Consensus 425 -~~~---------------------------------------------------------------------------- 427 (700)
.++
T Consensus 279 i~n~p~~~n~dF~~~H~~f~~g~tdIGYGlR~~~~hP~~k~a~~~~~~~~~~~~~~~~~~~~~s~lg~~~g~~~~~~~~g 358 (930)
T TIGR01706 279 IQNNPEAVNKDFVNKHTVFKKGVTDIGYGLRNNPDHPLEKAAKKDTVEKENVINADDEAATKLSTLGVKAGDKFEMKHQG 358 (930)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 50685576689887425434044313455678898626777765444443112578510100001000013112222210
Q ss_pred ---------HHHHHHHHCCCC------------------------HHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf ---------678888826877------------------------88999872-35310235443321047469898989
Q gi|254780859|r 428 ---------SEALADLVSGQH------------------------PFFKKLQE-ATRPLIIVGQGALRASDNVEVMANIA 473 (700)
Q Consensus 428 ---------~e~l~~~~~g~~------------------------~~~~~l~~-a~~~~ii~G~g~~~~~~g~~~~~al~ 473 (700)
++.+++.++.++ .+++.+.+ -.|.+-+|-+|+.||..|.-.-..+-
T Consensus 359 ~~~~~w~~~F~ef~~~va~Yt~~~~~~~~~v~~~~~l~~~~~~L~~LA~lY~dpn~KV~S~WTMGfNQHtRG~W~n~~vY 438 (930)
T TIGR01706 359 VADKNWEISFEEFKKFVAEYTLEKVSELSGVDDNESLEDFKDKLEQLAELYADPNRKVMSLWTMGFNQHTRGVWANNLVY 438 (930)
T ss_pred HCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 00011101378898530100345677640575223577889999999997327786078774067544521022888899
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHCCC------------------------------CCCCCCCCHHHH---H
Q ss_conf 9988741058533475424675310452-10177------------------------------658652368888---6
Q gi|254780859|r 474 KLVIDVGGISDSWNGFAVLHTVASRVGA-LDLGF------------------------------VPADDTINAMNI---L 519 (700)
Q Consensus 474 ~l~~~~G~ig~~g~G~~~L~~~~n~~Ga-~d~g~------------------------------~P~~~~~~~~~~---~ 519 (700)
+|.+++|.+..||++-..|+|+++..|. .++|. +|..+|..+... +
T Consensus 439 ~lHlL~GK~a~PG~~pFSLTGQpSACGTAReVGTF~HRLPaDMvV~NpkhR~~~E~~W~~P~gtIp~kpG~~~v~~~R~L 518 (930)
T TIGR01706 439 NLHLLTGKIAKPGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNPKHREIAEKIWKIPEGTIPEKPGLHAVAQDRAL 518 (930)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 98875165468888753457776666652346632334876635428677777777515875567776771788851013
Q ss_pred --HCCCEEEECCCCHHHCCC------------CCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCC
Q ss_conf --016759980764220166------------543450221166668874557704786202472088208867420443
Q gi|254780859|r 520 --DKTDIVFLLGADELDFSD------------KQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRA 585 (700)
Q Consensus 520 --~~~~~l~~~g~d~l~~~~------------~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~a 585 (700)
+++++.|+.-.|+++... ..-|+|+-|.++|-||..||+|||+|.|.||+|-|-|.|||.|.-+|-
T Consensus 519 ~DG~l~~yWv~vnNn~Qa~~N~~~e~~pg~R~~~NFIvVSD~YPtv~A~aADLiLP~AM~vEKeGAYGNAERRT~~W~Q~ 598 (930)
T TIGR01706 519 KDGKLNFYWVQVNNNMQAGPNINEERLPGYRNPDNFIVVSDAYPTVTALAADLILPSAMWVEKEGAYGNAERRTQVWKQQ 598 (930)
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 57806789998637433456755234654568875189846875325776645310023211367755601331021320
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 288555740799999999980779968798999999999781110
Q gi|254780859|r 586 IFPPGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYSHHPHFM 630 (700)
Q Consensus 586 v~p~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~~~P~~~ 630 (700)
|.++|+|++|.|=+.+.|+|+..+-=|. +|+.+..|.|.
T Consensus 599 V~~~Gea~SD~WQ~~eF~~RFk~~eVWp------ee~~a~~p~~~ 637 (930)
T TIGR01706 599 VEAPGEARSDLWQLVEFSKRFKVEEVWP------EELLAKKPEYR 637 (930)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCC------HHHHHCCCCHH
T ss_conf 0577776563578877742045313682------67862044204
No 47
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit; InterPro: IPR010046 This entry represents a well-defined clade of molybdopterin-dependent formate dehydrogenases, bacterial type , , , . It represents the alpha subunit, which contains a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulphur clusters and cytochromes.; GO: 0008863 formate dehydrogenase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=100.00 E-value=1.4e-45 Score=349.06 Aligned_cols=357 Identities=20% Similarity=0.262 Sum_probs=282.8
Q ss_pred CCCCHHHEE-CC--CCEEECCHHHHHHHHHHHHCCC--CCCEEEEECCC-CCCHHHHHHHHHHHHCCCCCEECCCCCCCC
Q ss_conf 001101100-22--2202324145668887520134--45314785043-232355547889863687724202334446
Q gi|254780859|r 282 QRLDCPYAR-IN--GRLKPVSWDYALKAIKSAVLSS--DVKLGAVVGDL-SSVEEIYALKLLMQSLGCENFDCRQNGEYL 355 (700)
Q Consensus 282 dRL~~PliR-~~--g~~~~iSWdeAl~~ia~~L~~~--~~~~g~~~g~~-~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~ 355 (700)
-||++||++ +- .+|+|||||+||+.|+++|+.. +++..++.|+| +|||.+|++++|++.|||||++-.++.|+.
T Consensus 113 GRL~~Pl~~r~~gsd~Y~piSW~~A~~~I~~~l~~~d~P~qv~fYtSGRG~SNEaay~~qLfaR~~GsNNlpDcS~mCH~ 192 (824)
T TIGR01701 113 GRLTYPLSLRDPGSDHYKPISWDDAYDEIAAKLNSLDDPKQVAFYTSGRGTSNEAAYLYQLFARSLGSNNLPDCSNMCHE 192 (824)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
T ss_conf 88678731057633566535779999999998517787005101114463268999999999987277871333543168
Q ss_pred CHHHHCC----CCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCC--C---------------
Q ss_conf 6434012----546778787740185799973853225731025778999759970661685--0---------------
Q gi|254780859|r 356 DPSYGRA----SYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGD--V--------------- 414 (700)
Q Consensus 356 ~~~~~~~----~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~--~--------------- 414 (700)
+...++. .+..+..+.|++++|+|++||.||.-+||++-..|++++++|+|.|.+-+- .
T Consensus 193 pS~vaL~~SiG~G~g~v~l~D~~~~D~~v~iG~n~gtN~PR~l~~L~~a~~rG~KiI~iNPl~E~GL~rF~~P~~P~~~L 272 (824)
T TIGR01701 193 PSSVALKKSIGIGKGSVLLEDFEHTDLLVLIGSNAGTNHPRMLKELIKAKKRGAKIIAINPLRERGLERFASPQIPIKML 272 (824)
T ss_pred CCHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCHHHH
T ss_conf 61123422023230367730000583799954548988843688999999639839997588550113016788760211
Q ss_pred ----HHHHHHHHCCC------------------------------------------------------------CCHHH
Q ss_conf ----12233443048------------------------------------------------------------98678
Q gi|254780859|r 415 ----GELRYKYEHLG------------------------------------------------------------NGSEA 430 (700)
Q Consensus 415 ----~~l~~~~~~l~------------------------------------------------------------~~~e~ 430 (700)
.++...+.++. -+.++
T Consensus 273 ~g~gt~I~s~y~Qv~~GGD~Al~~G~~k~LiE~~~~~~A~G~~~vaGqdGkPkdqdnaa~vafaas~asadnks~~D~~F 352 (824)
T TIGR01701 273 TGKGTQISSEYYQVRIGGDIALLVGLMKLLIEAEDAVKAAGQPGVAGQDGKPKDQDNAAMVAFAASMASADNKSLIDHEF 352 (824)
T ss_pred CCCCCCEEHEEECCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 27873000101047774279999998887632100112367887567788875213689999998775303543000789
Q ss_pred HHHHHCCCCH--------------------------HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 8888268778--------------------------89998723531023544332104746989898999887410585
Q gi|254780859|r 431 LADLVSGQHP--------------------------FFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISD 484 (700)
Q Consensus 431 l~~~~~g~~~--------------------------~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~ 484 (700)
+.+++.|+++ +|+.|++|.+.+|+||||++||.+|++++..++||+++.|+|||
T Consensus 353 i~~HT~GF~e~~~~~~~~~W~di~~~~GlS~~~i~~~A~~~a~s~r~v~~w~MGlTQH~~gv~Ni~~v~NlaLl~G~IGK 432 (824)
T TIGR01701 353 IANHTQGFDELRRAVLQLEWNDIERVSGLSQEEILEVAKLLANSERVVFCWAMGLTQHAHGVDNISQVANLALLRGNIGK 432 (824)
T ss_pred HHHHHCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98860277899999972470245654111579999999998612472788835557877764329999999984257788
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCC----CCCC---------------------CCCHHHHH----------HCCCEEEECC
Q ss_conf 33475424675310452101776----5865---------------------23688886----------0167599807
Q gi|254780859|r 485 SWNGFAVLHTVASRVGALDLGFV----PADD---------------------TINAMNIL----------DKTDIVFLLG 529 (700)
Q Consensus 485 ~g~G~~~L~~~~n~~Ga~d~g~~----P~~~---------------------~~~~~~~~----------~~~~~l~~~g 529 (700)
+|+|+-|++||.|+||...||.. |+.+ |....+++ .+++++|.+|
T Consensus 433 ~GAG~cP~RGHSNVQG~r~mGi~PfvLPGe~~~~e~l~~L~~~~G~~~P~~~G~~t~~~~eA~~~PDDheG~~~~f~~~G 512 (824)
T TIGR01701 433 PGAGVCPIRGHSNVQGDRTMGITPFVLPGEKLEEEFLARLSQVYGFTPPEAPGYTTVALIEAILTPDDHEGKVRAFICLG 512 (824)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 88860334477774667403104556489884379999998873888989987689999998508887666275443043
Q ss_pred CCHHHCC----------CCCCEEEHHHHH--HHHHHH---HCCEEECCCCCCCCCC--------EEEEECCEEEEECCCC
Q ss_conf 6422016----------654345022116--666887---4557704786202472--------0882088674204432
Q gi|254780859|r 530 ADELDFS----------DKQALTVYIGSH--GDRGAQ---SADVILPGAAYTEKSG--------LWVNTEGRVQMGMRAI 586 (700)
Q Consensus 530 ~d~l~~~----------~~~~fvV~~d~~--~t~tA~---~ADVVLP~a~~~Ek~G--------tf~N~EgRvQ~~~~av 586 (700)
.|-+.+. .+.++.|++++- .+.+-- .--+|||+=+-+|.+. |..|+++.+..++-..
T Consensus 513 GNF~~A~PD~a~~~~~L~~~~L~V~vatk~nLnrsH~l~~~~~~iLP~lgR~E~d~~~~~~QavS~e~s~~m~h~Srg~~ 592 (824)
T TIGR01701 513 GNFLEAMPDTAAIEEALRQLDLRVHVATKFNLNRSHVLAKEEALILPVLGRIEQDGQKTGKQAVSVEDSMRMVHESRGIL 592 (824)
T ss_pred HHHHHCCCCHHHHHHHHHHCCEEEEEEEECCCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEECCCEEHHHCCCCCC
T ss_conf 26652088989999886424367898862256402433203135512566301788888541476010100021376557
Q ss_pred CCCC-CCCHHHHHHHHHHHHHCC---CCCC----CCHHHHHHHHHHHCC-CCCCCCCCCCC
Q ss_conf 8855-574079999999998077---9968----798999999999781-11055422422
Q gi|254780859|r 587 FPPG-DAKEDWEIICALADELKC---SLPF----SSLSQLRSHLYSHHP-HFMQLDEIRPS 638 (700)
Q Consensus 587 ~p~g-eak~dw~Il~~La~~LG~---~~~~----~~~~ei~~ei~~~~P-~~~~~~~~~~~ 638 (700)
.|++ +.|+.|+|+.+||+++-- ..+| ++.+.||++|++.+| .|.++++....
T Consensus 593 ~P~~~~l~SE~~i~~~iA~a~~~P~~~v~W~~~~~~y~~IRd~Ia~~~Pe~y~d~~~~~~~ 653 (824)
T TIGR01701 593 KPRGAELRSEIAIIAEIAKALLPPETPVAWEKLVDTYDQIRDAIAAVIPEGYDDINHRVRR 653 (824)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 7711677647999999998637798844368776458889999986268561346877308
No 48
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=100.00 E-value=8.3e-44 Score=335.41 Aligned_cols=366 Identities=14% Similarity=0.096 Sum_probs=252.1
Q ss_pred CEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEEC-CCCEEECCHHHH
Q ss_conf 023522012116886436675159999885247888777741135542210000-000011011002-222023241456
Q gi|254780859|r 226 ELTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARI-NGRLKPVSWDYA 303 (700)
Q Consensus 226 el~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~-~g~~~~iSWdeA 303 (700)
.-....|+|..|+.+|+|.|.++|||++||+|+++||+|+|.+|.||+.+...+ +||||++||+|. +|+|+++|||||
T Consensus 41 ~~~~yat~~~~~~~~cgvlv~~~dGRpiKieGNp~hP~s~G~~c~~~qa~v~~lYdPdRl~~Pl~r~~~g~~~~iSWdea 120 (524)
T cd02764 41 ETVYYATSLVPAGEGQGVLVKTVDGRPIKIEGNPDHPASLGGTSARAQASVLSLYDPDRAQGPLRRGIDGAYVASDWADF 120 (524)
T ss_pred CCCEEEEEECCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCHHHCCCCCEEECCHHHH
T ss_conf 64426898637898312899998996788777888987788656888989987319554117332068987666779999
Q ss_pred HHHHHHHHCCCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCC------HHHHCCCCCCCCCHHHHHC
Q ss_conf 68887520134453--147850432323555478898636877242023344466------4340125467787877401
Q gi|254780859|r 304 LKAIKSAVLSSDVK--LGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLD------PSYGRASYIFNPTIQGIEE 375 (700)
Q Consensus 304 l~~ia~~L~~~~~~--~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~------~~~~~~~~~~~~~i~die~ 375 (700)
+++|+++|+++++. ...+.+...+.....++++|++.+++.+...+...+... ..+|.. ..+..|+++
T Consensus 121 ~~~ia~kl~~~~~g~~~~~l~~~~~sp~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~~fG~~----~~~~~d~~~ 196 (524)
T cd02764 121 DAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYDPLSAEDVNEAWQASFGKD----VVPGYDFDK 196 (524)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCC----CCCCCCCCC
T ss_conf 9999999997653598899957889807999999999975997642461544699999999972997----777666210
Q ss_pred CCEEEEECCCCCCCCCCH--HHH----HHHH--HHCCCCEEECCCCCHHHHHHHH---CCCCCHHH--------------
Q ss_conf 857999738532257310--257----7899--9759970661685012233443---04898678--------------
Q gi|254780859|r 376 ADAMLIIGSNPRLEAAVL--NAR----IRKR--WRRGNFPIAVIGDVGELRYKYE---HLGNGSEA-------------- 430 (700)
Q Consensus 376 ad~illiG~Np~~~~Pvl--~~r----irka--~~~g~~~I~vi~~~~~l~~~~~---~l~~~~e~-------------- 430 (700)
||+||.||+|+-..++-. +.+ .|+. ..+++++|++++.........+ .+.++++.
T Consensus 197 A~~Il~~gadfl~~~~~~~~~~~~~~~~R~~~~~~~~~rlvvvDpr~S~Tga~AD~~l~irPgtd~alalama~~ii~~~ 276 (524)
T cd02764 197 AEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAFALGLAHKLIKKG 276 (524)
T ss_pred CCEEEEECCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 31788735642212775577899999862302456741499972678856875255758689719999999999998678
Q ss_pred --------HHHH-----------HCCC-----CHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf --------8888-----------2687-----788999872353102354433210474698989899988741058533
Q gi|254780859|r 431 --------LADL-----------VSGQ-----HPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSW 486 (700)
Q Consensus 431 --------l~~~-----------~~g~-----~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g 486 (700)
+.+. +.+. ..+++.|+++.+++++.| +...+.++.++.+++..|..++|++|+..
T Consensus 277 ~~~~~~~~~~~~~~~~~pe~~~~itgv~~~~I~~lA~~la~~~~s~vv~G-~~~~~~~~~~~~~~v~~LN~~lGn~G~~v 355 (524)
T cd02764 277 AGSSLPDFFRALNLAFKPAKVAELTVDLDKALAALAKALAAAGKSLVVAG-SELSQTAGADTQVAVNALNSLLGNDGKTV 355 (524)
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 86433688997641138878855339869999999999984699689988-75234456999999999999968886545
Q ss_pred CCCCCCCCCCCCCCC-HHCCCCCCCCCCCHHHHHHCCCEEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHH
Q ss_conf 475424675310452-10177658652368888601675998076422----------0166543450221166668874
Q gi|254780859|r 487 NGFAVLHTVASRVGA-LDLGFVPADDTINAMNILDKTDIVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQS 555 (700)
Q Consensus 487 ~G~~~L~~~~n~~Ga-~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~ 555 (700)
....+.... ..|. .++..+ .. ...-+++++|+++|.||+ +.+++.+|+|++|.|+||||++
T Consensus 356 ~~~~~~~~~--~~~~~~~l~~l-----~~-~~~~G~V~~l~i~g~NPv~~~P~~~~~~~aL~kv~~~V~~~~~~dETA~~ 427 (524)
T cd02764 356 DHARPIKGG--ELGNQQDLKAL-----AS-RINAGKVSALLVYDVNPVYDLPQGLGFAKALEKVPLSVSFGDRLDETAML 427 (524)
T ss_pred CCCCCCCCC--CCCCHHHHHHH-----HH-HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHH
T ss_conf 766777665--55666689999-----99-97658861999976672214767699999984599599986878837884
Q ss_pred CCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5577047862024720882088674204432885557407999999999
Q gi|254780859|r 556 ADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALAD 604 (700)
Q Consensus 556 ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~ 604 (700)
||+|||+++|+|+-|-+-...|.+...+|+|.|.+++|+..++|..++.
T Consensus 428 Ad~vLP~~h~LEsWgD~~~~~g~~sl~QP~I~PLfdtr~~~e~l~~~~g 476 (524)
T cd02764 428 CDWVAPMSHGLESWGDAETPDGTYSICQPVIAPLFDTRSAQESLLLALG 476 (524)
T ss_pred CCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHC
T ss_conf 6884278786201578666698699977855555588868999999858
No 49
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit; InterPro: IPR014066 This entry represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. This enzyme acts in energy metabolism by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export ..
Probab=100.00 E-value=1.2e-43 Score=334.31 Aligned_cols=408 Identities=20% Similarity=0.228 Sum_probs=297.2
Q ss_pred CCCEEEEEECCCCCCCCCEEEEE------------------------------------------CCCCEE--EEEECCC
Q ss_conf 43023522012116886436675------------------------------------------159999--8852478
Q gi|254780859|r 224 SWELTKTDSIDVMDALGSAIRID------------------------------------------ARGCEV--MRILPRI 259 (700)
Q Consensus 224 pwel~~~~SvC~~C~~GC~i~v~------------------------------------------v~~g~i--~rv~~~~ 259 (700)
|-+=|++.-||.||-|||+-.|+ -||||= +=|.|+.
T Consensus 6 P~nAkk~N~tC~fCiVGCGY~vY~Wp~nkeGG~~p~qNafGlDls~~Q~p~~~~~ytp~M~nV~~~~dGr~~nvvI~Pdk 85 (858)
T TIGR02693 6 PKNAKKYNVTCHFCIVGCGYHVYVWPVNKEGGVKPEQNAFGLDLSEKQLPEADASYTPAMYNVVVARDGRQVNVVIVPDK 85 (858)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCHHCCEEECCCCCCCCCCCCCCCCCCHHEEEEECCCCEEEEEEECCC
T ss_conf 86651115345448852574576656776668864305340226767786123542510000123148856658887388
Q ss_pred CCCCCCCEECCCC------CCCCCHHHHC-CCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCCCEE------E----EE
Q ss_conf 8877774113554------2210000000-0110110022220232414566888752013445314------7----85
Q gi|254780859|r 260 NESINEEWISDKT------RFIWDGLKVQ-RLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVKLG------A----VV 322 (700)
Q Consensus 260 ~~~vN~g~lC~KG------Rf~~d~~~~d-RL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~~~g------~----~~ 322 (700)
+.+||+|.-+.|| -|+-|....| ||++|+++.+++|+++|||+||+++|..++.|.++-| + -+
T Consensus 86 ecvvN~Gl~S~RGg~~A~t~~s~dr~TqdqRLtyPl~~~gdQ~q~~sWddAl~l~a~l~kkI~d~~g~ddni~v~~FDHG 165 (858)
T TIGR02693 86 ECVVNRGLSSVRGGKMAETVYSLDRGTQDQRLTYPLLYVGDQFQATSWDDALTLVALLTKKILDRDGEDDNIIVKAFDHG 165 (858)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 87401687652333035678565167634640687466636345356789999999888766405887213688701368
Q ss_pred CCCCCCHHHHHH-HHHHHHCCCCCEECCCCCCCCCHHHH---CCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHH--HH
Q ss_conf 043232355547-88986368772420233444664340---1254677878774018579997385322573102--57
Q gi|254780859|r 323 GDLSSVEEIYAL-KLLMQSLGCENFDCRQNGEYLDPSYG---RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLN--AR 396 (700)
Q Consensus 323 g~~~t~Ee~y~~-k~l~~~lGt~nid~~~~~~~~~~~~~---~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~--~r 396 (700)
|+-.--|+.|.. |.++.+|.+++|--|.|-++-++..+ ++-+-+|.+++|-+-||+|++||+|+.|++++.+ ++
T Consensus 166 GaGgGfEntwg~GKL~F~A~~vk~irIHNRPAYNSEvhgtRe~GvgELNn~YEDA~lADtIv~~G~N~yET~T~yflnHw 245 (858)
T TIGR02693 166 GAGGGFENTWGAGKLFFAALKVKNIRIHNRPAYNSEVHGTREMGVGELNNTYEDARLADTIVAVGANSYETQTNYFLNHW 245 (858)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHEEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 88877132212457889872788226427887354134202576211267421101210535605885202357717333
Q ss_pred H----------HHHHH-CC-----CCEEECCCCCHHHHHHH---------HCCC--CCHH--------------------
Q ss_conf 7----------89997-59-----97066168501223344---------3048--9867--------------------
Q gi|254780859|r 397 I----------RKRWR-RG-----NFPIAVIGDVGELRYKY---------EHLG--NGSE-------------------- 429 (700)
Q Consensus 397 i----------rka~~-~g-----~~~I~vi~~~~~l~~~~---------~~l~--~~~e-------------------- 429 (700)
| ||.+- .| +..|+|+|+++..-... -||. .||+
T Consensus 246 lPNl~G~t~~kKkq~fdpgEP~epG~~I~vDPRrT~s~~~aeQtAG~DrVlhL~iN~GTD~aLfNal~tyv~~kGw~d~~ 325 (858)
T TIGR02693 246 LPNLRGATVAKKKQLFDPGEPAEPGLLIVVDPRRTSSVAVAEQTAGKDRVLHLRINLGTDLALFNALLTYVLEKGWVDKE 325 (858)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 55788764689986317888878866899808874023442224786737874478875599999999999842813489
Q ss_pred HHHHH------------------------HCCCCH--------------H-----------HHHHHHC------------
Q ss_conf 88888------------------------268778--------------8-----------9998723------------
Q gi|254780859|r 430 ALADL------------------------VSGQHP--------------F-----------FKKLQEA------------ 448 (700)
Q Consensus 430 ~l~~~------------------------~~g~~~--------------~-----------~~~l~~a------------ 448 (700)
+|+.- +.++++ | .++|.+|
T Consensus 326 fi~~~tlreGtarPPlyParGvseanP~h~~~FEdyavk~~~mSvPydef~a~a~rITGvs~a~i~kAAeWi~kPKaggk 405 (858)
T TIGR02693 326 FIDKRTLREGTARPPLYPARGVSEANPTHLTLFEDYAVKSLKMSVPYDEFLAEAERITGVSEAEIEKAAEWIAKPKAGGK 405 (858)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99876531366788876545555577765440233323110036766899999865278888999999864037634687
Q ss_pred -CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--------CCCCCCHHCCCCCCCCCCCH--HH
Q ss_conf -53102354433210474698989899988741058533475424675--------31045210177658652368--88
Q gi|254780859|r 449 -TRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTV--------ASRVGALDLGFVPADDTINA--MN 517 (700)
Q Consensus 449 -~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~--------~n~~Ga~d~g~~P~~~~~~~--~~ 517 (700)
.|.+.++-.|+....++.+...+|.+|+.+|+||||+|+|+.-+.|| +..-|+...| .+.+.. ..
T Consensus 406 ~rRtm~~YEKGiIWg~dNY~~~~alv~La~aT~NiGRpGtGcvR~GGHQEGYVRPp~PtPGs~h~g----gp~~yVD~~l 481 (858)
T TIGR02693 406 KRRTMTIYEKGIIWGNDNYDIVAALVDLAVATQNIGRPGTGCVRLGGHQEGYVRPPAPTPGSIHRG----GPKVYVDQLL 481 (858)
T ss_pred CCCEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCC----CCCEEEEEEE
T ss_conf 652466652311417620346789999999844867478753504861046231866668753258----8740321013
Q ss_pred HHHCCCEEEECCCCHHHC-----------------------------------------C---CCCCEEEHHHHHHHHHH
Q ss_conf 860167599807642201-----------------------------------------6---65434502211666688
Q gi|254780859|r 518 ILDKTDIVFLLGADELDF-----------------------------------------S---DKQALTVYIGSHGDRGA 553 (700)
Q Consensus 518 ~~~~~~~l~~~g~d~l~~-----------------------------------------~---~~~~fvV~~d~~~t~tA 553 (700)
+-++.++.+++|.|+... . +..-|+|++|.++|+++
T Consensus 482 I~GkG~~~~~~gcd~y~tt~Naq~fr~v~~~Rt~~vkdAmsaa~~Pg~~~e~v~~I~Da~~qgPdgLF~v~~diypTk~~ 561 (858)
T TIGR02693 482 IEGKGKVYTVWGCDNYKTTLNAQVFRKVIKKRTEIVKDAMSAAGEPGTIEEMVDKILDALSQGPDGLFVVVVDIYPTKLA 561 (858)
T ss_pred ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHH
T ss_conf 32756079998348766754579999998877789999974388886789998887755406986368997402123122
Q ss_pred HHCCEEECCCCCCCCCCEEEEE-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHH----------------CCCCCCCCHH
Q ss_conf 7455770478620247208820-8867420443288555740799999999980----------------7799687989
Q gi|254780859|r 554 QSADVILPGAAYTEKSGLWVNT-EGRVQMGMRAIFPPGDAKEDWEIICALADEL----------------KCSLPFSSLS 616 (700)
Q Consensus 554 ~~ADVVLP~a~~~Ek~Gtf~N~-EgRvQ~~~~av~p~geak~dw~Il~~La~~L----------------G~~~~~~~~~ 616 (700)
+-||||||||++.|-+-|-+|- |||+...+|..+|||+|+|||.|+..+|++| .+.|+|.+-|
T Consensus 562 eaaHliLPAA~~GE~NlTS~NgneRrmRL~EkfMDpPG~a~PDclIaa~~ant~~~~y~aeGk~e~ak~F~fGfdWkTeE 641 (858)
T TIGR02693 562 EAAHLILPAAGSGEMNLTSMNGNERRMRLSEKFMDPPGEALPDCLIAAKVANTLKELYRAEGKVEEAKKFEFGFDWKTEE 641 (858)
T ss_pred HHHCEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHH
T ss_conf 43402246788875323223655420000000258778888428999999999999998448803021303688977537
Q ss_pred HHHHHHHHHC--CCCCCCCCC
Q ss_conf 9999999978--111055422
Q gi|254780859|r 617 QLRSHLYSHH--PHFMQLDEI 635 (700)
Q Consensus 617 ei~~ei~~~~--P~~~~~~~~ 635 (700)
|++..=++.. |.-..+|+.
T Consensus 642 DaF~dG~~~~~~~~~~~~Dea 662 (858)
T TIGR02693 642 DAFLDGYEEARDNTVEEEDEA 662 (858)
T ss_pred HHHHHHHHHHCCCCCCHHHHH
T ss_conf 788875876067888701142
No 50
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=100.00 E-value=8.7e-33 Score=255.82 Aligned_cols=362 Identities=18% Similarity=0.190 Sum_probs=270.4
Q ss_pred EEEECCCCCCCCC-EEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHH-HHCCCCHHHEECCCCEEECCHHHHHHH
Q ss_conf 5220121168864-36675159999885247888777741135542210000-000011011002222023241456688
Q gi|254780859|r 229 KTDSIDVMDALGS-AIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARINGRLKPVSWDYALKA 306 (700)
Q Consensus 229 ~~~SvC~~C~~GC-~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~-~~dRL~~PliR~~g~~~~iSWdeAl~~ 306 (700)
...-||++||.-| .|++.+.+|+| ++.. .|-.|-.-|... .++|++.||+|.+|+|+++|||||++.
T Consensus 3 ~k~~vCp~CG~lCDDI~v~~e~~~i-~~~n----------aCr~G~akF~~~~~~~R~~~p~ik~~g~~k~v~~deAie~ 71 (429)
T COG1029 3 IKNVVCPFCGTLCDDIEVEVEDGKI-EVRN----------ACRIGNAKFKEAFSDHRIKAPMIKDDGELKPVDYDEAIEK 71 (429)
T ss_pred EEEEECCCCCCCCCCEEEEECCCEE-HHHH----------HHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCHHHHHHH
T ss_conf 1247767655410536999668732-1043----------7766278886430333223745822894213249999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHC-CCEEEEECC
Q ss_conf 875201344531478504323235554788986368772420233444664340-125467787877401-857999738
Q gi|254780859|r 307 IKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEE-ADAMLIIGS 384 (700)
Q Consensus 307 ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~-ad~illiG~ 384 (700)
.|+-|.+.+.- -.+.++.+++|..-+--++...+|. -+|..++.|+-+...+ +.++..++++.++.| ||+|+.||+
T Consensus 72 Aa~ILv~aKrP-llyg~s~tscEA~~~gielaE~~ga-viD~~asvchGp~~~alqe~g~p~~TlgevKNraDviVyWGt 149 (429)
T COG1029 72 AAEILVNAKRP-LLYGWSSTSCEAQELGIELAEKLGA-VIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIVYWGT 149 (429)
T ss_pred HHHHHHHCCCC-EEECCCCCHHHHHHHHHHHHHHHCC-EECCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCEEEEECC
T ss_conf 99999826785-2623553218899999999987372-774787400565788998559866551221256658999578
Q ss_pred CCCCCCCCHHHH--------HHHHHHCCCCEEECCCCCHHHHH---HHHCCCCCH--H---HHHHHHCCCC---------
Q ss_conf 532257310257--------78999759970661685012233---443048986--7---8888826877---------
Q gi|254780859|r 385 NPRLEAAVLNAR--------IRKRWRRGNFPIAVIGDVGELRY---KYEHLGNGS--E---ALADLVSGQH--------- 439 (700)
Q Consensus 385 Np~~~~Pvl~~r--------irka~~~g~~~I~vi~~~~~l~~---~~~~l~~~~--e---~l~~~~~g~~--------- 439 (700)
||.+.||...+| .|++-+.....|+++++.++.+- ...++.++. + +|...+.|.+
T Consensus 150 NP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDyelisAl~~~l~G~~~~~~eev~g 229 (429)
T COG1029 150 NPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDYELISALRAALHGKEPHRSEEVAG 229 (429)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf 84323520210023033642245776664499980676725665432175689986799999999855899987242148
Q ss_pred -------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHC-----CC-
Q ss_conf -------88999872353102354433210474698989899988741058533475424675310452101-----77-
Q gi|254780859|r 440 -------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDL-----GF- 506 (700)
Q Consensus 440 -------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~-----g~- 506 (700)
++++.+++|+-.+|++|+|+.++..-..++..+.+|...+++..+- -+.+++++.|+.|.-.. |+
T Consensus 230 vp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~--tli~mrgH~Nv~GFnqv~~~e~GYp 307 (429)
T COG1029 230 VPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKF--TLIPMRGHYNVTGFNEVLSWETGYP 307 (429)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCEEECCCCCCCHHHHHHHHHHHHHHCEE--EEEEECCEECCCCCCCCHHHHHCCC
T ss_conf 79899999999986398124998302000344223579999999998653229--9997304002345241014340775
Q ss_pred --------CCCC-C-CCCHHHHH--HCCCEEEECCCCHHHCCCCC-------CEEEHHHHHHHHHHHHCCEEECCCCCC-
Q ss_conf --------6586-5-23688886--01675998076422016654-------345022116666887455770478620-
Q gi|254780859|r 507 --------VPAD-D-TINAMNIL--DKTDIVFLLGADELDFSDKQ-------ALTVYIGSHGDRGAQSADVILPGAAYT- 566 (700)
Q Consensus 507 --------~P~~-~-~~~~~~~~--~~~~~l~~~g~d~l~~~~~~-------~fvV~~d~~~t~tA~~ADVVLP~a~~~- 566 (700)
.|.. + ...+.+.+ .+.++.++.++||....+.. --+|++|+|++.|++.||||+|++--.
T Consensus 308 f~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP~aI~gm 387 (429)
T COG1029 308 FAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVIPSAIDGM 387 (429)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHCCCEECCCCEEEE
T ss_conf 05642568767796510088987504777379995384112719999876239779956878963110115512511335
Q ss_pred CCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 24720882088674204432885557407999999999807
Q gi|254780859|r 567 EKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELK 607 (700)
Q Consensus 567 Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG 607 (700)
|-+||+.-.+|-.-+++|++++ ..++|-+|+..|-+++.
T Consensus 388 E~~GTayRmD~V~v~~k~~~es--~~~sde~iLk~l~ekv~ 426 (429)
T COG1029 388 EAEGTAYRMDGVPVRMKPVVES--KTLSDEEILKKLLEKVK 426 (429)
T ss_pred ECCCEEEEECCCEEEEEECCCC--CCCCHHHHHHHHHHHHH
T ss_conf 5165599506835765740352--00275999999999886
No 51
>TIGR02164 torA trimethylamine-N-oxide reductase TorA; InterPro: IPR011887 Trimethylamine N-oxide (TMAO) is a major low molecular mass compound found in marine fishes and invertebrates where it is thought to act as an osmoprotectant . It has the useful biological function of protecting proteins against denaturation induced by stresses such as high concentrations of urea . Several bacterial species are capable of anaerobic growth using TMAO as the terminal electron acceptor of a respiratory transport chain where it is reduced to the volatile compound trimethylamine . Bacteria which reduce TMAO fall into three ecological niches: marine bacteria, photosynthetic bacteria living in ponds and, surprisingly, enterobacteria. The TMAO reductase torA is an inducible, periplasmic, molydopterin-containing enzyme enzyme which shows a high level of substrate specificity . The crystal structure of the Shewenella massilia enzyme (O87948 from SWISSPROT) has been determined to 2.5 A resolution . This protein has the same overall structure as dimethylsulphoxide (DMSO) reductase, being a spherical protein composed of four domains, with a freely accessible, funnel-like cavity leading to the metal-ion redox centre.; GO: 0030151 molybdenum ion binding, 0050626 trimethylamine-N-oxide reductase (cytochrome c) activity, 0042597 periplasmic space.
Probab=99.97 E-value=1.5e-29 Score=232.42 Aligned_cols=369 Identities=19% Similarity=0.256 Sum_probs=244.5
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECC---------------CCEEECCHHHHHH
Q ss_conf 366751599998852478887777411355422100000-000110110022---------------2202324145668
Q gi|254780859|r 242 AIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARIN---------------GRLKPVSWDYALK 305 (700)
Q Consensus 242 ~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~---------------g~~~~iSWdeAl~ 305 (700)
.+++.+++|+|+.+.|-+-+..=-..| +| --|.++ +-|+.+||+|.| .+|.+|||||||+
T Consensus 61 A~ra~~~~G~~~~~KpfelD~yPt~Mi--~G--i~~~~y~~~R~RYPMVRlDwL~K~H~s~t~~RGdnRFvRVtWD~Ald 136 (847)
T TIGR02164 61 AIRAKVKNGKVVEVKPFELDKYPTEMI--NG--IKDLVYNPARVRYPMVRLDWLKKRHKSNTEQRGDNRFVRVTWDEALD 136 (847)
T ss_pred EEEEEEECCEEEEECCCCCCCCHHHHH--HH--HHHHCCCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCEEEEEHHHHHH
T ss_conf 043465076478732320235628897--20--03101264433355000243422334420105773258864778889
Q ss_pred HHHHHHCCCCCCEEEEE---CCCCCCHHHH---HHHHHHHHCC--CCCE----E--CCCCCCCCCHHHHC-CCCCCCCCH
Q ss_conf 88752013445314785---0432323555---4788986368--7724----2--02334446643401-254677878
Q gi|254780859|r 306 AIKSAVLSSDVKLGAVV---GDLSSVEEIY---ALKLLMQSLG--CENF----D--CRQNGEYLDPSYGR-ASYIFNPTI 370 (700)
Q Consensus 306 ~ia~~L~~~~~~~g~~~---g~~~t~Ee~y---~~k~l~~~lG--t~ni----d--~~~~~~~~~~~~~~-~~~~~~~~i 370 (700)
+..+.|.+++.+||..+ |...-..+.. .-..+.+++| .|.| | +.+...-++...|. .-|...+|.
T Consensus 137 lFy~eLervQ~~yGP~aL~~G~~GW~~TG~fH~~~~~~~rAvg~HGN~v~~~GDYSTGAgQ~IlPyVlGS~EVY~QgTSW 216 (847)
T TIGR02164 137 LFYEELERVQKQYGPSALHTGQTGWRSTGQFHNCTAMMQRAVGMHGNSVKKVGDYSTGAGQVILPYVLGSTEVYAQGTSW 216 (847)
T ss_pred HHHHHHHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCEEECCEEEECCCCCH
T ss_conf 99999999964108631120440135516510136899999874266113556652563211104553432240467748
Q ss_pred HH-HHCCCEEEEECCCCCCCCCC---------H--HHHHHHHHHCCCCEEECCCCCHHHHHHHH------C--CCC----
Q ss_conf 77-40185799973853225731---------0--25778999759970661685012233443------0--489----
Q gi|254780859|r 371 QG-IEEADAMLIIGSNPRLEAAV---------L--NARIRKRWRRGNFPIAVIGDVGELRYKYE------H--LGN---- 426 (700)
Q Consensus 371 ~d-ie~ad~illiG~Np~~~~Pv---------l--~~rirka~~~g~~~I~vi~~~~~l~~~~~------~--l~~---- 426 (700)
.- |+++|.|++|++||..+.-+ . ..+||..+.+|...|+.++|+..-+..+. + +.+
T Consensus 217 ~~iL~~S~~IvlW~~D~~KNlQvgWnce~H~~y~Yl~QLK~KV~~g~i~Vis~DPV~~~T~~yLg~~~~~~~~vNPQTDV 296 (847)
T TIGR02164 217 PLILENSDTIVLWASDPVKNLQVGWNCETHESYEYLAQLKAKVAAGEINVISVDPVVTKTQEYLGCEHVKHLYVNPQTDV 296 (847)
T ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 99973378089834765000203666775226799999999984197169986787535787622363015665587578
Q ss_pred ----------------CHHHHHHHHCCCCH---------------------------------HHHHHHHCCCCHHHHHH
Q ss_conf ----------------86788888268778---------------------------------89998723531023544
Q gi|254780859|r 427 ----------------GSEALADLVSGQHP---------------------------------FFKKLQEATRPLIIVGQ 457 (700)
Q Consensus 427 ----------------~~e~l~~~~~g~~~---------------------------------~~~~l~~a~~~~ii~G~ 457 (700)
+..++..+.-|+++ +++.|.+ +|.=+|.|+
T Consensus 297 ~l~LAlAH~ly~~~LYD~~Fi~~Y~~GFE~F~PY~lG~~kD~~~K~~~WA~~icg~~a~~IR~lAr~l~~-~RTQ~~~GW 375 (847)
T TIGR02164 297 ALMLALAHTLYSENLYDKKFIENYCVGFEEFLPYLLGKSKDKVEKDAEWAAKICGVEAETIRDLARMLVA-GRTQLIFGW 375 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH-CCCEEEECH
T ss_conf 9999999999876300156774303433430230027654776478788766406688899999999972-793488602
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCCCCHHCCC---------CCCCCC---------CCH
Q ss_conf 332104746989898999887410585334754246753----1045210177---------658652---------368
Q gi|254780859|r 458 GALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVA----SRVGALDLGF---------VPADDT---------INA 515 (700)
Q Consensus 458 g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~----n~~Ga~d~g~---------~P~~~~---------~~~ 515 (700)
-+++..+|.+-....+-||+.+|+||-+|+|+..-+-.+ -+.|+.-.|. .|..+. +..
T Consensus 376 ciQR~~HGEQp~WM~~VLAaMlGQIGLpGGGisyghHYs~iG~Ps~~~a~~g~Fp~NLd~~~kP~~Dn~dy~GyS~~IP~ 455 (847)
T TIGR02164 376 CIQRQQHGEQPYWMGAVLAAMLGQIGLPGGGISYGHHYSGIGVPSSGAAIPGAFPRNLDEGQKPKYDNSDYKGYSSTIPV 455 (847)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 34430157845899999998742115787652300000554778766512565631112588885467242643333436
Q ss_pred HH----H---------------HHCCCEEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCC
Q ss_conf 88----8---------------601675998076422----------016654345022116666887455770478620
Q gi|254780859|r 516 MN----I---------------LDKTDIVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQSADVILPGAAYT 566 (700)
Q Consensus 516 ~~----~---------------~~~~~~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~ 566 (700)
.. + +...|+..+-|.||. +...+++.||.+|..+|.|.++|||||||+|-+
T Consensus 456 AR~iDaiLePGk~I~~NG~~v~~p~~KM~if~G~Npw~~H~~~N~~~~af~kLEtvv~id~~WTaTCRFsDIVLPAcT~f 535 (847)
T TIGR02164 456 ARWIDAILEPGKTIDHNGKKVTLPPLKMMIFSGCNPWHRHQDRNRMKQAFQKLETVVTIDVSWTATCRFSDIVLPACTQF 535 (847)
T ss_pred HHHHHHHHCCCHHHHCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 77886441665042348878630773148873788622255789999986424337884065452011001015788872
Q ss_pred CCC-----CEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CHHH
Q ss_conf 247-----20882088674204432885557407999999999807799687-9899
Q gi|254780859|r 567 EKS-----GLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFS-SLSQ 617 (700)
Q Consensus 567 Ek~-----Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~~~~-~~~e 617 (700)
|++ |.|.|- =+-..++.|+|..++|.|++||++|+.++|.+-.|. +.+|
T Consensus 536 ERNDiD~YG~ysnr--G~iAM~~~V~Plf~sr~DFeIf~~l~r~fg~E~~yt~~~dE 590 (847)
T TIGR02164 536 ERNDIDAYGSYSNR--GIIAMQKLVDPLFDSRSDFEIFTELCRRFGREKEYTRGMDE 590 (847)
T ss_pred CCCCHHHCCCCCCC--HHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCHHHHHCCCCH
T ss_conf 10233231330141--47767651460220123479999999872423677536633
No 52
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=2.3e-28 Score=223.92 Aligned_cols=97 Identities=34% Similarity=0.641 Sum_probs=93.9
Q ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 49999999999688875889999868954612127999645600047999717988702002656645663766685379
Q gi|254780859|r 5 VKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEV 84 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v 84 (700)
|+|+|||+++++++|+||||||+.+||+||+||||++|.+.|+|+||+|||+| .+++++||+|+|++|| +|
T Consensus 4 i~~~i~g~~~~~~~g~til~~a~~~gi~IP~lC~~~~~~~~~~C~lC~Vei~g-~~~~v~aC~t~~~~gm--------~i 74 (652)
T PRK12814 4 ISLTINGRSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKG-KNRFVPACSTAVSEGM--------VI 74 (652)
T ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCCCCCCCCCC--------EE
T ss_conf 69998898987689980999999759946666689887878873568999678-8874156566067998--------89
Q ss_pred EECCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 81998999999999999982789988
Q gi|254780859|r 85 FTKSSMVKKARAGVMEFLLINHPLDC 110 (700)
Q Consensus 85 ~t~s~~v~~~r~~vle~ll~nHpldC 110 (700)
.|+|+++.+.||..||+||.+|.-||
T Consensus 75 ~t~s~~l~~~R~~~L~~il~~H~~dC 100 (652)
T PRK12814 75 ETENAELHAMRRQSLERLIEQHCGDC 100 (652)
T ss_pred EECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 95899999999999999976426846
No 53
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases; InterPro: IPR006658 This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulphoxide reductase, dimethylsulphoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulphur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif . ; GO: 0016491 oxidoreductase activity, 0006118 electron transport.
Probab=99.93 E-value=4.8e-24 Score=192.69 Aligned_cols=377 Identities=18% Similarity=0.223 Sum_probs=238.8
Q ss_pred EEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHH-CCCCHHHEECC---------------CCEEECCHHHHHH
Q ss_conf 3667515999988524788877774113554221000000-00110110022---------------2202324145668
Q gi|254780859|r 242 AIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKV-QRLDCPYARIN---------------GRLKPVSWDYALK 305 (700)
Q Consensus 242 ~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~-dRL~~PliR~~---------------g~~~~iSWdeAl~ 305 (700)
.+.+.+++|+++.+.|-..++.-...+-. ..|.+++ .|+++||+|++ ++|.++|||+||+
T Consensus 6 ~~~~~v~~G~~~~~~p~~~d~~P~~~~~~----~~~~~~~~~r~~~P~vr~~~l~~~~~~~~~~rG~~~f~~vsWd~ald 81 (802)
T TIGR00509 6 AFTATVKDGKIVAVTPFASDPNPSPLLEG----VPDQVYSESRIKYPMVRKGWLENGGLSDRSGRGREEFVRVSWDEALD 81 (802)
T ss_pred EEEEEECCCEEEEECCCCCCCCCCHHHHH----HHHCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHH
T ss_conf 14788717534420000036665067775----43204654564041134576626787763335665401112889986
Q ss_pred HH-HHHHCCCCCCEEE---EECCC-CCC------HHHHHHHHHHH-HCCCC--CEE---CCCCCCCCCHHHHC---CCCC
Q ss_conf 88-7520134453147---85043-232------35554788986-36877--242---02334446643401---2546
Q gi|254780859|r 306 AI-KSAVLSSDVKLGA---VVGDL-SSV------EEIYALKLLMQ-SLGCE--NFD---CRQNGEYLDPSYGR---ASYI 365 (700)
Q Consensus 306 ~i-a~~L~~~~~~~g~---~~g~~-~t~------Ee~y~~k~l~~-~lGt~--nid---~~~~~~~~~~~~~~---~~~~ 365 (700)
++ +++++++.+.+|. +.++. ... ....+++++++ .+|.- +.. ..+....++...|. ..+.
T Consensus 82 l~g~~~~~r~~~~~g~~~~~~~sygGW~~~G~~h~~~~l~~r~~~~~~Gg~~g~~g~ys~ga~~~i~p~~~G~~l~e~~~ 161 (802)
T TIGR00509 82 LVGAGELKRVRKDHGPAAIFAGSYGGWGSAGRLHHASTLLQRFLNTLLGGYVGHGGDYSTGAAQVILPHVVGDDLLEVYE 161 (802)
T ss_pred HHCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 52302345534303641000145554234430356789999999876255435765421111345655554378998742
Q ss_pred CCCCHH-HHHCCCEEEEECCCCCCCCCCHH---------HHHHHHHHCCCC---EEECCCCCHHHHHH--------HHCC
Q ss_conf 778787-74018579997385322573102---------577899975997---06616850122334--------4304
Q gi|254780859|r 366 FNPTIQ-GIEEADAMLIIGSNPRLEAAVLN---------ARIRKRWRRGNF---PIAVIGDVGELRYK--------YEHL 424 (700)
Q Consensus 366 ~~~~i~-die~ad~illiG~Np~~~~Pvl~---------~rirka~~~g~~---~I~vi~~~~~l~~~--------~~~l 424 (700)
..++++ -+++++++++||+||-.+.-++. .++++-..+|.. .++.++|..+-+.. .+++
T Consensus 162 ~~t~w~~~~~~~~~~v~wg~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~g~~~~~~~~P~~~~~~~~~~~~~d~~~w~ 241 (802)
T TIGR00509 162 QQTTWPLILENSKVLVLWGADPLKTARSIAWGSPDHPGYEYYGRLKAKGKRGEIEVISIDPLRTETAEFFGPLDDRAEWI 241 (802)
T ss_pred HCCCHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCCEEE
T ss_conf 01312666515636888447640124441465665454124789973277650468873663011588716744551263
Q ss_pred ----------------------CCCHHHHHHHHCCCCHHHH-------------------------------HHHHCCCC
Q ss_conf ----------------------8986788888268778899-------------------------------98723531
Q gi|254780859|r 425 ----------------------GNGSEALADLVSGQHPFFK-------------------------------KLQEATRP 451 (700)
Q Consensus 425 ----------------------~~~~e~l~~~~~g~~~~~~-------------------------------~l~~a~~~ 451 (700)
..+.++++.+..|++.+.. .+..+++.
T Consensus 242 ~~~p~td~~l~lg~a~~l~~~~~~d~~fl~~y~~G~~~f~~yl~G~~d~~Pk~~~Wa~~~~G~~a~~~~~la~~~~~~rt 321 (802)
T TIGR00509 242 PPNPGTDVALMLGLAHTLVTEGLYDKDFLAKYTSGFEKFLPYLLGESDGTPKTAEWASKITGVPAETIKELARLFASKRT 321 (802)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 36787517888877778763241246788651456678899870677888766688887507888999999987654211
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH-HCC---CCC-----CCC-----------
Q ss_conf 023544332104746989898999887410585334754246753104521-017---765-----865-----------
Q gi|254780859|r 452 LIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGAL-DLG---FVP-----ADD----------- 511 (700)
Q Consensus 452 ~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~-d~g---~~P-----~~~----------- 511 (700)
++..|+++.+..+|.+...++..|+..+|++|.+|+|+..-....+..|.- ..| .++ ...
T Consensus 322 ~l~~~w~~qr~~~Geq~~W~~~~la~~lGq~G~pGGGfG~~~~~~g~~g~p~~~g~~~~~~~~~~~~~~~~g~~~~~~~~ 401 (802)
T TIGR00509 322 MLTAGWSLQRAQHGEQPHWMLVTLAAMLGQIGLPGGGFGFGYHYSGGGGAPSAAGKLPALSQGSNSVSGPPGRADNGWDD 401 (802)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
T ss_conf 12222345655405516899999998851036787740023224565567522342111356555656776655320001
Q ss_pred -------CCCHHHH----------------HHCCCEEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHHCCE
Q ss_conf -------2368888----------------601675998076422----------0166543450221166668874557
Q gi|254780859|r 512 -------TINAMNI----------------LDKTDIVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQSADV 558 (700)
Q Consensus 512 -------~~~~~~~----------------~~~~~~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~ADV 558 (700)
..+..++ +..++++|..|.||+ ....+.+.+|+++.++|.|+++||+
T Consensus 402 ~~~~~~P~ar~~d~l~~Pg~~~~~~G~~~~~P~~k~~~w~Gg~p~~hh~d~n~l~~a~~~~~~~~~~~~~wt~~a~~adi 481 (802)
T TIGR00509 402 GGLSFIPVARISDALLNPGKEIDYNGKELKLPDIKMVYWAGGNPFHHHQDTNRLIKAWRKPETVIVHEPYWTPTAKHADI 481 (802)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHCCCCE
T ss_conf 33210017889999857896010376301268610788628885643221268998631554588732653400000103
Q ss_pred EECCCCCCCCC-----CEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHH
Q ss_conf 70478620247-----20882088674204432885557407999999999807-79968798999999999
Q gi|254780859|r 559 ILPGAAYTEKS-----GLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELK-CSLPFSSLSQLRSHLYS 624 (700)
Q Consensus 559 VLP~a~~~Ek~-----Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG-~~~~~~~~~ei~~ei~~ 624 (700)
|||+++.+|++ |.|.|. -+-...++|+|.+|+|.|++||.+|+.++| ..-.|..-.+-+.-|..
T Consensus 482 v~p~tt~~er~d~~~~g~~~~~--~~~~~~~~v~P~~ea~~d~~~f~~l~~~~g~~~~~fteg~~~~~W~~~ 551 (802)
T TIGR00509 482 VLPATTSFERNDLTMAGDYSNP--GILAMKQVVPPLFEARNDYDIFAALAERLGGVEEAFTEGKDEMGWLKH 551 (802)
T ss_pred EECCCCCCCCCCHHHHCCCCCC--EEEECHHHCCCHHCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHH
T ss_conf 3213342001202220343455--011002121410104431589999998616711222045026899999
No 54
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]
Probab=99.92 E-value=8.9e-24 Score=190.75 Aligned_cols=377 Identities=20% Similarity=0.238 Sum_probs=232.3
Q ss_pred EEEEEECC-CCCCCCCEEEEECCCCEEEEEECC-------CCCCCCCCEECCCCC-CCCCHHHHCCCCHHHEEC------
Q ss_conf 23522012-116886436675159999885247-------888777741135542-210000000011011002------
Q gi|254780859|r 227 LTKTDSID-VMDALGSAIRIDARGCEVMRILPR-------INESINEEWISDKTR-FIWDGLKVQRLDCPYARI------ 291 (700)
Q Consensus 227 l~~~~SvC-~~C~~GC~i~v~v~~g~i~rv~~~-------~~~~vN~g~lC~KGR-f~~d~~~~dRL~~PliR~------ 291 (700)
-|.++|+- +.|.--|+-.++||||-|.=-.-. ++-|--|-+=|+||- |+|=.+++.|+++|++|.
T Consensus 44 DKvVRSTHGVNCTGSCSWkIYVKdGiITWEtQqtDYP~tgPD~PnyEPRGCPRGASfSWY~YSp~RvkyPyiRg~L~emw 123 (1227)
T COG5013 44 DKVVRSTHGVNCTGSCSWKIYVKNGLITWETQQTDYPRTGPDLPNYEPRGCPRGASFSWYLYSPNRVKYPYIRGRLIEMW 123 (1227)
T ss_pred CCEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 50554157766552456889985888887302566888899998888789988774145873453203416777999999
Q ss_pred --------------------------------CCCEEECCHHHHHHHHHHHHCCCCCCEEE--EEC--C--CCCCHHHHH
Q ss_conf --------------------------------22202324145668887520134453147--850--4--323235554
Q gi|254780859|r 292 --------------------------------NGRLKPVSWDYALKAIKSAVLSSDVKLGA--VVG--D--LSSVEEIYA 333 (700)
Q Consensus 292 --------------------------------~g~~~~iSWdeAl~~ia~~L~~~~~~~g~--~~g--~--~~t~Ee~y~ 333 (700)
-|.|+++||+||+++||..+.-...+||. ++| + -.|.=+ |+
T Consensus 124 REAk~~~gDPV~AWa~IvedP~krk~Yk~aRGkGG~VR~~W~E~~EiIAAA~vyTIk~YGPDRv~GFSPIPAMSmVS-yA 202 (1227)
T COG5013 124 REAKARHGDPVEAWASIVEDPDKRKSYKQARGKGGFVRSSWDEVNELIAAANVYTIKTYGPDRVAGFSPIPAMSMVS-YA 202 (1227)
T ss_pred HHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HH
T ss_conf 99998718989999998769898888886305776688428999999987664104420885333767763020320-31
Q ss_pred H-HHHHHHCCCCCEECCCCCCCCC----HHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 7-8898636877242023344466----4340125467787877401857999738532257310257789997599706
Q gi|254780859|r 334 L-KLLMQSLGCENFDCRQNGEYLD----PSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPI 408 (700)
Q Consensus 334 ~-k~l~~~lGt~nid~~~~~~~~~----~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I 408 (700)
. .+|...+|..-..+.---+.++ +.+|.-.-+ +--.|.-|+-+++.||+|.-.+-.-.++.+-++.-+|++.|
T Consensus 203 AGaRfl~LIGGvmlSFYDWYaDLPpASPQvwGeQTDV--PESaDWynssyii~wGsNvP~TRTPDahf~te~RYkGtK~v 280 (1227)
T COG5013 203 AGARFLSLIGGVMLSFYDWYADLPPASPQTWGEQTDV--PESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTV 280 (1227)
T ss_pred HCCHHHHHHCCHHCCHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 0014998745211021033047998996434666788--86435224233577425788667886146777661587449
Q ss_pred ECCCCCHHHH------------------HHHHC-------------------------------------------C---
Q ss_conf 6168501223------------------34430-------------------------------------------4---
Q gi|254780859|r 409 AVIGDVGELR------------------YKYEH-------------------------------------------L--- 424 (700)
Q Consensus 409 ~vi~~~~~l~------------------~~~~~-------------------------------------------l--- 424 (700)
++.++.++.+ ....| |
T Consensus 281 ~vspDyae~~KfaD~Wl~~~~GtD~Ala~amgHViL~Ef~v~~~~~~f~dY~r~ytD~P~Lv~L~~~dg~y~~grfLras 360 (1227)
T COG5013 281 VVSPDYAEVAKFADLWLAPKQGTDAALAMAMGHVILKEFHVDNPSDYFIDYVRRYTDMPMLVMLEERDGSYVPGRFLRAS 360 (1227)
T ss_pred EECCCHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEHH
T ss_conf 97774687552345544766788378874044089999866997489999999745785037763446876776013543
Q ss_pred --C--------------------------C--------------------------------------------------
Q ss_conf --8--------------------------9--------------------------------------------------
Q gi|254780859|r 425 --G--------------------------N-------------------------------------------------- 426 (700)
Q Consensus 425 --~--------------------------~-------------------------------------------------- 426 (700)
. +
T Consensus 361 dl~~~~~~~~~~~wk~~~~d~~~~~~~~p~Gsig~Rwge~gkwnl~~~~~~~g~~~~~~~~l~~~~~~~~~v~fp~f~~~ 440 (1227)
T COG5013 361 DLVDELGQANNPEWKTVALDETTGELVVPNGSIGFRWGEKGKWNLELRDVATGAETELQLSLLGQHDEVAEVAFPYFGGD 440 (1227)
T ss_pred HCCCCCCCCCCCCCCHHEECCCCCCEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHCCCHHHEEEEECCCCCCC
T ss_conf 30574211145300010121677844413554455407864406861256676431314211553010245503433577
Q ss_pred -----------------------------------------------------------CHHHHHHHHCCCC-----HHH
Q ss_conf -----------------------------------------------------------8678888826877-----889
Q gi|254780859|r 427 -----------------------------------------------------------GSEALADLVSGQH-----PFF 442 (700)
Q Consensus 427 -----------------------------------------------------------~~e~l~~~~~g~~-----~~~ 442 (700)
.+.++.+-+.|.. .++
T Consensus 441 ~~~~~~~~l~r~vP~~~~~lA~gs~~~v~tvfdl~~A~yGv~Rgl~~~~~~~~y~D~~~yTPAWqE~iTgV~~~~~i~~a 520 (1227)
T COG5013 441 GGPKHDGVLLRGVPVKRLTLADGSTALVTTVFDLLLANYGVDRGLLDGNSAKSYDDPKPYTPAWQEQITGVPRAQAIRIA 520 (1227)
T ss_pred CCCCCCCEEEECCCCEEEECCCCCCEEEEEEEHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 78666762342266235431567742599971244654070103567655544688876886126565086099999999
Q ss_pred HHHHH-----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCC----------------
Q ss_conf 99872-----35310235443321047469898989998874105853347542------4675----------------
Q gi|254780859|r 443 KKLQE-----ATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAV------LHTV---------------- 495 (700)
Q Consensus 443 ~~l~~-----a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~------L~~~---------------- 495 (700)
+++++ -.+.+||+|.|+.+..+.-.+.+++.+|..++|..|+.|+|-.- |+++
T Consensus 521 rEfA~nA~~t~GRsmii~GaginHw~h~D~~YR~vlnl~~l~g~~G~nGGGWAHYVGQEKlRp~~GW~~~Afa~DW~rPP 600 (1227)
T COG5013 521 REFADNADKTHGRSMIIVGAGINHWYHSDMNYRGVLNLLMLCGCVGQNGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPP 600 (1227)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEECCCCCCHHHHHHCCCCCCC
T ss_conf 99875056658835689636500201167889999999998641124378513531403303320303422101467886
Q ss_pred --CCC------------------------------C---------CCHHCCCCCCCCCCCHH------------------
Q ss_conf --310------------------------------4---------52101776586523688------------------
Q gi|254780859|r 496 --ASR------------------------------V---------GALDLGFVPADDTINAM------------------ 516 (700)
Q Consensus 496 --~n~------------------------------~---------Ga~d~g~~P~~~~~~~~------------------ 516 (700)
-|. . -+.-||.+|..+.++..
T Consensus 601 R~~n~tsffY~htdQWRye~~~~~~l~sP~a~~~~~~~h~~D~nv~a~r~GWlPs~Pq~n~npL~~~~ea~a~g~~~~~~ 680 (1227)
T COG5013 601 RQMNSTSFFYNHTDQWRYEKVTADELLSPLADRSRYSGHLIDFNVRAERMGWLPSAPQLNRNPLDIADEAEAAGLDPVDY 680 (1227)
T ss_pred CCCCCCCEEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 33677734787054202166457665175345455578631156788873777777534788035579998728988999
Q ss_pred --HHHH----------------CCCEEEECCCCHH---------------------------------------HCC-CC
Q ss_conf --8860----------------1675998076422---------------------------------------016-65
Q gi|254780859|r 517 --NILD----------------KTDIVFLLGADEL---------------------------------------DFS-DK 538 (700)
Q Consensus 517 --~~~~----------------~~~~l~~~g~d~l---------------------------------------~~~-~~ 538 (700)
+.+. -++.||++-+|.+ +.+ -|
T Consensus 681 v~~~Lk~g~l~~a~EdPD~p~N~PR~lfvWRsNLlgSSgKGhEyflkhLLGt~~~~~~~~~~~~~~p~ev~w~~~apEGK 760 (1227)
T COG5013 681 VVQQLKSGKLRFAIEDPDNPENHPRNLFVWRSNLLGSSGKGHEYFLKHLLGTDIQGLDLGASDGIKPEEVEWRDEAPEGK 760 (1227)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCEEEEEHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 99997558766874388985567430121102201667773799999874886545445656788860667523687761
Q ss_pred CCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCE-EEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 434502211666688745577047862024720-88208867420443288555740799999999980
Q gi|254780859|r 539 QALTVYIGSHGDRGAQSADVILPGAAYTEKSGL-WVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 539 ~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gt-f~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
++++|.+|..|+.|+.++|||||+|+|+||+.. -+...-.+..+.+||+|+=|+|+||+|+.+||+++
T Consensus 761 LDLlv~lDFRmssT~lysDIVLPaATWYEK~DLsttDmHpfiHpfs~AvdP~WEsksDWeifk~iak~F 829 (1227)
T COG5013 761 LDLLVTLDFRMSSTCLYSDIVLPAATWYEKDDLSTTDMHPFIHPFSAAVDPAWESKSDWEIYKAIAKKF 829 (1227)
T ss_pred EEEEEEEEECCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 358999730124540132042023300220567744455545667633487433312689999999999
No 55
>TIGR01580 narG nitrate reductase, alpha subunit; InterPro: IPR006468 The nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex is a heterotrimer consisting of alpha, beta and gamma subunits . The alpha subunit contains a molybdenum cofactor, the beta subunit contains [Fe-S] clusters while the gamma subunit contains haeme and is membrane bound. The alpha and beta subunits form a membrane extrinsic catalytic dimer which is bound to the membrane by the gamma subunit, which is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. The three subunits form a stable "flower"-shaped structure , where the gamma subunit anchors the alpha and beta subunits to the membrane through predominantly hydrophobic interactions. The structure is further stabilised by the presence of a phosphatidylglycerol molecule that is bound by all three subunits. The alpha subunit uses a Mo-bisMGD cofactor for catalytic activity and, like other proteins that bind this cofactor, forms four alpha-beta domains grouped around the cofactor. Interaction with the other catalytic subunit occurs along an extensive, buried interface.; GO: 0008940 nitrate reductase activity, 0042126 nitrate metabolic process, 0009325 nitrate reductase complex.
Probab=99.90 E-value=7.4e-23 Score=184.09 Aligned_cols=385 Identities=19% Similarity=0.207 Sum_probs=239.3
Q ss_pred CCCCCCCEEEEEECC-CCCCCCCEEEEECCCCEEEEEEC-------CCCCCCCCCEECCCCCCCCC-HHH-HCCCCHHHE
Q ss_conf 334443023522012-11688643667515999988524-------78887777411355422100-000-000110110
Q gi|254780859|r 220 FTGRSWELTKTDSID-VMDALGSAIRIDARGCEVMRILP-------RINESINEEWISDKTRFIWD-GLK-VQRLDCPYA 289 (700)
Q Consensus 220 ~~~Rpwel~~~~SvC-~~C~~GC~i~v~v~~g~i~rv~~-------~~~~~vN~g~lC~KGRf~~d-~~~-~dRL~~Pli 289 (700)
|+.|---.|-|+|+= +.|.--|+-.++||+|-|.==.- +++=|--|-+=|+||- +|- |++ +.||++|++
T Consensus 35 YR~RWQy~KiVRSTHGVNCTGSCSW~IYVKNGlvTWE~Q~~~YP~T~~DlP~~EPRGCPRGA-SySWYiYSa~RlKYP~~ 113 (1248)
T TIGR01580 35 YRNRWQYDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGA-SYSWYIYSANRLKYPKV 113 (1248)
T ss_pred CCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCHHH
T ss_conf 13433203357405761455421024687355574135457878787776777767788876-22554431201357144
Q ss_pred ECC--------------------------------------CCEEECCHHHHHHHHHHHHCCCCCCEEE--E--ECCC--
Q ss_conf 022--------------------------------------2202324145668887520134453147--8--5043--
Q gi|254780859|r 290 RIN--------------------------------------GRLKPVSWDYALKAIKSAVLSSDVKLGA--V--VGDL-- 325 (700)
Q Consensus 290 R~~--------------------------------------g~~~~iSWdeAl~~ia~~L~~~~~~~g~--~--~g~~-- 325 (700)
|.- |.|.+.||+|.+++||.-+.-.-.+||. . +||.
T Consensus 114 R~~L~~lWREA~~~~~~P~EAW~SIvE~~~KA~SyK~~RG~GGFvRs~W~EV~~lIaAs~~YTv~~yGPDR~vGFSPIPA 193 (1248)
T TIGR01580 114 RKVLLKLWREAKQTHQDPVEAWASIVENKEKAKSYKQARGKGGFVRSSWEEVNELIAASNVYTVKKYGPDRVVGFSPIPA 193 (1248)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 47999988999873237047777541685665688842798641436759999999888777775438886456678606
Q ss_pred CCCHHHHHH-HHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCC--CCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 232355547-889863687724202334446643401254677--87877401857999738532257310257789997
Q gi|254780859|r 326 SSVEEIYAL-KLLMQSLGCENFDCRQNGEYLDPSYGRASYIFN--PTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWR 402 (700)
Q Consensus 326 ~t~Ee~y~~-k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~--~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~ 402 (700)
.|.=+ |+- .+++..+|..-+.+.---|.+++..-.--+-.+ +-=.|.-|+.+||-||+|.-.+-+-=++.+-++--
T Consensus 194 MSMvS-yAsGsRylSLIGG~~LSFYDWY~DLPPASP~~WG~QTDVPESaDWYNS~YIIaWGSNVP~TRTPDAHF~~E~RY 272 (1248)
T TIGR01580 194 MSMVS-YASGSRYLSLIGGVCLSFYDWYCDLPPASPQIWGEQTDVPESADWYNSGYIIAWGSNVPQTRTPDAHFFTEVRY 272 (1248)
T ss_pred HHHHH-HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCCCCCCCHHHHHHHEE
T ss_conf 78987-76444666763221120222211675787766676568887411005775687167888888885022210111
Q ss_pred CCCCEEECCCCCHHHH---HHHHCCCCCH---------------------------------------------------
Q ss_conf 5997066168501223---3443048986---------------------------------------------------
Q gi|254780859|r 403 RGNFPIAVIGDVGELR---YKYEHLGNGS--------------------------------------------------- 428 (700)
Q Consensus 403 ~g~~~I~vi~~~~~l~---~~~~~l~~~~--------------------------------------------------- 428 (700)
+|++.|.+-|+.++.+ .....+..|+
T Consensus 273 KG~K~vai~PDyaE~aKl~D~WL~~kQGTDaAlA~A~gHVil~EF~l~~~~~~F~eY~k~YTD~P~LV~L~p~lga~~~g 352 (1248)
T TIGR01580 273 KGTKTVAITPDYAEVAKLADLWLSPKQGTDAALALAMGHVILKEFHLDKPSEYFTEYAKRYTDLPVLVMLEPMLGAKEDG 352 (1248)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHCCHHHCCCCCC
T ss_conf 46237984587677777764312645675699999732211100103771468999988743884020001333236677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780859|r 429 -------------------------------------------------------------------------------- 428 (700)
Q Consensus 429 -------------------------------------------------------------------------------- 428 (700)
T Consensus 353 ~Y~agR~L~A~Dl~D~~G~~~~~~WK~~~~d~~~s~~~~P~G~~G~RW~~~~KWNl~~~d~~~G~~iel~LSllG~~Dei 432 (1248)
T TIGR01580 353 VYTAGRFLRAKDLGDALGQENNPEWKTVALDEQGSELVIPQGSIGYRWGEKGKWNLEQRDGETGEEIELRLSLLGIEDEI 432 (1248)
T ss_pred CCCCCCCEEHHHHHHHCCCCCCCCCCEEEECCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE
T ss_conf 30633100032334430566786524244316775353468840013378652024223588885014324553254450
Q ss_pred ------------------------------------------------------------------------------HH
Q ss_conf ------------------------------------------------------------------------------78
Q gi|254780859|r 429 ------------------------------------------------------------------------------EA 430 (700)
Q Consensus 429 ------------------------------------------------------------------------------e~ 430 (700)
.+
T Consensus 433 a~V~~PYF~~d~~e~F~~v~g~~Vl~r~lPvk~~~L~DG~~a~vtTVfDL~lANyg~~RGlg~~n~A~~YDD~~~~gTPA 512 (1248)
T TIGR01580 433 AEVRFPYFSGDATEYFQKVEGEKVLLRKLPVKKLNLADGSEALVTTVFDLILANYGVERGLGERNSAVSYDDAEAFGTPA 512 (1248)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 14635410561578876641100010048802676168873454056678888767652778644313356778888885
Q ss_pred HHHHHCCCC-----HHHHHHHH-----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC------CCCC
Q ss_conf 888826877-----88999872-----3531023544332104746989898999887410585334754------2467
Q gi|254780859|r 431 LADLVSGQH-----PFFKKLQE-----ATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFA------VLHT 494 (700)
Q Consensus 431 l~~~~~g~~-----~~~~~l~~-----a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~------~L~~ 494 (700)
+.+-+.|.. .+++++++ .-|.|||+|.|+.+..+.-.+.+++.+|.+++|..|..|+|=. -|++
T Consensus 513 W~EQ~TGv~~~~~i~IAREFA~NA~~T~GRSMIIVGAg~NHWy~~D~~YRgl~N~l~l~G~~G~~GGGWAHYVGQEKLRP 592 (1248)
T TIGR01580 513 WQEQITGVSREKVIKIAREFADNADKTDGRSMIIVGAGLNHWYHLDMNYRGLINLLLLCGCVGQNGGGWAHYVGQEKLRP 592 (1248)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 25450453578999998887520013688668997350334565225789999999885250558984266506544575
Q ss_pred CC------------------C---------CC------------------------------CCHHCCCCCCCCCCCHH-
Q ss_conf 53------------------1---------04------------------------------52101776586523688-
Q gi|254780859|r 495 VA------------------S---------RV------------------------------GALDLGFVPADDTINAM- 516 (700)
Q Consensus 495 ~~------------------n---------~~------------------------------Ga~d~g~~P~~~~~~~~- 516 (700)
+. | .| -|.-+|.+|+.+.++..
T Consensus 593 ~~GW~~lA~a~DW~~~p~~~NgTSfFY~~~~QWRyE~~~~~dl~SP~A~~Sry~~H~~DyNv~A~R~GWLPS~P~ln~Np 672 (1248)
T TIGR01580 593 QEGWQPLAFALDWERPPRLMNGTSFFYFHSSQWRYEDVSIEDLLSPLADKSRYTKHLLDYNVRAERLGWLPSAPQLNTNP 672 (1248)
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCH
T ss_conf 35631233100245441002661344257553301356578851301221157664211235776425778878667763
Q ss_pred -HH----------------------HHC----------------CCEEEECCCCHH------------------------
Q ss_conf -88----------------------601----------------675998076422------------------------
Q gi|254780859|r 517 -NI----------------------LDK----------------TDIVFLLGADEL------------------------ 533 (700)
Q Consensus 517 -~~----------------------~~~----------------~~~l~~~g~d~l------------------------ 533 (700)
.+ +.+ ++-||++-+|.+
T Consensus 673 l~~~~eA~~AG~~~~~dvGaYv~~~L~e~~l~FA~E~Pd~~~NfPRNlFiWRsNLl~SSGKGHEy~LKyLLGT~~G~~n~ 752 (1248)
T TIGR01580 673 LDIAKEAEKAGMEPKDDVGAYVVKSLQEGSLRFAIEQPDNEVNFPRNLFIWRSNLLGSSGKGHEYMLKYLLGTKNGLMND 752 (1248)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 58899999817787102000101000168424420278888888720476556553167720889999871445675655
Q ss_pred -------------H-----CCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEE-EECCEEEEECCCCCCCCCCCH
Q ss_conf -------------0-----166543450221166668874557704786202472088-208867420443288555740
Q gi|254780859|r 534 -------------D-----FSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWV-NTEGRVQMGMRAIFPPGDAKE 594 (700)
Q Consensus 534 -------------~-----~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~-N~EgRvQ~~~~av~p~geak~ 594 (700)
+ ..-|+++||.+|..|..|+.|+|||||+|||+||+..-+ ..-=.+..+.+||+|+=|+|+
T Consensus 753 D~G~~~~~kP~E~~W~~~g~~GKLDL~~~LDFR~ssT~lYSDIvLP~ATWYEK~D~~~~DMHPFIHPlsaAi~~aWEskS 832 (1248)
T TIGR01580 753 DLGQQDSIKPEEIEWRDEGAEGKLDLVITLDFRMSSTCLYSDIVLPTATWYEKDDLNTSDMHPFIHPLSAAIDPAWESKS 832 (1248)
T ss_pred CCCCCCCCCCCCCCHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 56778850442013200567773210010023455456554301246654100267756788552552133576424566
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799999999980
Q gi|254780859|r 595 DWEIICALADEL 606 (700)
Q Consensus 595 dw~Il~~La~~L 606 (700)
||+|++.||+++
T Consensus 833 DW~IyKa~aK~~ 844 (1248)
T TIGR01580 833 DWEIYKAIAKAF 844 (1248)
T ss_pred HHHHHHHHHHHH
T ss_conf 078999999888
No 56
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.45 E-value=4e-14 Score=121.01 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCEEEECCCCC-------C---CCCCC----CCEEECCCCCC
Q ss_conf 236454320687400333066641266205875-------5---56546----62220121210
Q gi|254780859|r 163 RCVRFITEVAGVSELGLVGRGENAEITTYLEQS-------L---TSEMQ----GNIIDLCPVGA 212 (700)
Q Consensus 163 RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~-------~---~~e~~----Gncvd~CPvGA 212 (700)
|.||+|+--+- ..|+|.|..... | -|+.+ .=|...||+|-
T Consensus 59 ~~v~aC~t~~~----------~gm~i~t~s~~l~~~R~~~L~~il~~H~~dC~aPC~~aCPa~~ 112 (652)
T PRK12814 59 RFVPACSTAVS----------EGMVIETENAELHAMRRQSLERLIEQHCGDCLGPCELACPAGC 112 (652)
T ss_pred CCCCCCCCCCC----------CCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC
T ss_conf 74156566067----------9988995899999999999999976426846581000399999
No 57
>pfam10588 NADH-G_4Fe-4S_3 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region.
Probab=99.43 E-value=1.2e-13 Score=117.57 Aligned_cols=41 Identities=54% Similarity=1.096 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999999827899887788878883799899838986747
Q gi|254780859|r 95 RAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRY 135 (700)
Q Consensus 95 r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~ 135 (700)
||.+|||||+|||+|||+|||+|+|+|||++++||++++||
T Consensus 1 Rk~~lelll~~Hp~dC~~C~k~G~CeLQ~~a~~~gi~~~r~ 41 (41)
T pfam10588 1 RKTILELLLANHPLDCPTCDKNGNCELQDLAYELGVDESRF 41 (41)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 97899999967997687799999688999999978787899
No 58
>pfam04879 Molybdop_Fe4S4 Molybdopterin oxidoreductase Fe4S4 domain.
Probab=99.37 E-value=3.7e-13 Score=114.04 Aligned_cols=55 Identities=9% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHH
Q ss_conf 2352201211688643667515999988524788877774113554221000000
Q gi|254780859|r 227 LTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKV 281 (700)
Q Consensus 227 l~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~ 281 (700)
++.++|+|++|++||+|.+++++|+|+||+|++++|+|+|+||+||||+++++++
T Consensus 1 ~k~v~T~C~~C~~gC~i~~~v~~g~v~~v~g~~~~p~n~G~lC~KG~~~~~~v~s 55 (55)
T pfam04879 1 MKVVKTVCPYCGVGCGLLVHVKDGKIVKVEGDPDHPVNRGRLCVKGRFGYERVYS 55 (55)
T ss_pred CCEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 9688269999920489899991998999987888986571498778635786469
No 59
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.85 E-value=4.9e-09 Score=84.29 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=68.3
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCC
Q ss_conf 79989983898674777567787888560210064329010023645432068740033306664126620587555654
Q gi|254780859|r 121 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEM 200 (700)
Q Consensus 121 LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~ 200 (700)
|-......|.-...|++++..++..+-| .+.+|+++||.|+-|++.|- ..+|.+............+ ....|.|
T Consensus 4 ~l~~~l~~Gp~T~~YP~~~~~~p~~fRG-~~~~d~ekCigC~~C~~~CP----~~AI~~~~~~~~~~~~~~i-d~~rCif 77 (178)
T PRK12387 4 FIKKVIKTGTATSSYPLEPIAVDKNFRG-KPEYNPQQCIGCAACVNACP----SNALTVETDLATGELAWQF-NLGRCIF 77 (178)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHCCCHHHHHHHCC----CCCCEEEECCCCCCEEEEE-CCCCCCC
T ss_conf 9999845898311199999999998688-46578311628479996586----3128754047788357886-3040668
Q ss_pred CCCEEECCCCCCCCCCC
Q ss_conf 66222012121012233
Q gi|254780859|r 201 QGNIIDLCPVGALTSKP 217 (700)
Q Consensus 201 ~Gncvd~CPvGALt~k~ 217 (700)
||.|+++||+|||+-.+
T Consensus 78 CG~C~evCPt~AI~lt~ 94 (178)
T PRK12387 78 CGRCEEVCPTAAIKLSQ 94 (178)
T ss_pred CCHHHHHCCCCCCCCCH
T ss_conf 67156668824223361
No 60
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=98.78 E-value=4.4e-09 Score=84.62 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEE-ECCCCCC-EEEECCCCCCCCCCCCCEEECC
Q ss_conf 8674777567787888560210064329010023645432068740033-3066641-2662058755565466222012
Q gi|254780859|r 131 GSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGL-VGRGENA-EITTYLEQSLTSEMQGNIIDLC 208 (700)
Q Consensus 131 ~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~-~~RG~~~-~i~~~~~~~~~~e~~Gncvd~C 208 (700)
-.-.|+++|+..+...-| .+.++++|||.|+-|+|.|-- ....+.. .+.+... ....|.=+...|-|||+|+++|
T Consensus 38 vTiqYP~ek~~~~~RfRG-ri~~~~dkCI~C~~C~~vCP~--~~i~Vd~~~~~~~~kK~~~~y~ID~grCIFCG~CvEaC 114 (173)
T CHL00014 38 VTIQYPYEKLITSERFRG-RIHFEFDKCIACEVCVRVCPI--DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYC 114 (173)
T ss_pred CCCCCCCCCCCCCCCCCC-EEECCCCCCCCHHHHHHHCCC--CCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 411398888889988687-000584117244369865977--76163355678888501146775616213036711017
Q ss_pred CCCCCCCC
Q ss_conf 12101223
Q gi|254780859|r 209 PVGALTSK 216 (700)
Q Consensus 209 PvGALt~k 216 (700)
||+||+-.
T Consensus 115 PtdAI~mT 122 (173)
T CHL00014 115 PTNCLSMT 122 (173)
T ss_pred CCCCCCCC
T ss_conf 86803356
No 61
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.72 E-value=1.8e-08 Score=80.14 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=67.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEE---CCCCCCEEEECCCCCCC
Q ss_conf 799899838986747775677878885602100643290100236454320687400333---06664126620587555
Q gi|254780859|r 121 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV---GRGENAEITTYLEQSLT 197 (700)
Q Consensus 121 LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~---~RG~~~~i~~~~~~~~~ 197 (700)
|-...+..|.-...|+.++..++..+-| .+.+|.++||.|+.|+++|-- .+|.+. .+|.. ++.=....
T Consensus 4 llk~~lk~G~~T~~YP~e~~~~~~~fRG-~p~~d~ekCIgC~~C~~~CP~----~AI~~~~d~~~~~r----~~~id~gr 74 (181)
T PRK08222 4 LLKTIMRAGTATVKYPFAPLEVSPGFRG-KPDLMPSQCIACGACACACPA----NALTIQTDDQQNSR----TWQLYLGR 74 (181)
T ss_pred HHHHHHCCCCHHHCCCCCCCCCCCCCCC-EEECCHHHCCCHHHHHHHCCC----CCCEEEECCCCCCE----EEEECCCC
T ss_conf 9999963898020399999999999677-331681018453289875860----26687622678856----88852661
Q ss_pred CCCCCCEEECCCCCCCCCC
Q ss_conf 6546622201212101223
Q gi|254780859|r 198 SEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 198 ~e~~Gncvd~CPvGALt~k 216 (700)
|.|||.|+++||||||.-.
T Consensus 75 CIfCG~C~EvCPt~AI~lt 93 (181)
T PRK08222 75 CIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred CCCCCHHHHHCCCCCCCCC
T ss_conf 6787724414881420677
No 62
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.68 E-value=2.8e-08 Score=78.76 Aligned_cols=171 Identities=22% Similarity=0.370 Sum_probs=91.0
Q ss_pred CCEEEEEC---C-------EEEEEC--CCCCHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 10499999---9-------999968--887588999986895-4612127999645600047999717988702002656
Q gi|254780859|r 3 MMVKLKVD---G-------IEIEVP--SGFTILQACELAGAE-IPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMN 69 (700)
Q Consensus 3 ~mv~~~Id---g-------~~v~v~--~g~til~a~~~~gi~-IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~ 69 (700)
+||+|+|- . ++++|+ +|+|||+|.+..-=+ -|.|.|.-.- -.|-|--|.|-|.| .|+| ||.|.
T Consensus 2 ~~i~i~V~R~~pe~d~p~~~~y~v~~~e~mtvL~aL~~I~~~~d~tl~fr~sC-r~giCGsCav~iNG-~p~L--AC~t~ 77 (491)
T PRK06259 2 KMIKVTVKRFEPETDEPHFEEYEVPVTEGMTVLDALEAINKTYDPNIAFRSSC-RAGQCGSCAVRING-EPVL--ACKTE 77 (491)
T ss_pred CEEEEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEHHHHC-CCCCCCCCEEEECC-EEEE--EEEEE
T ss_conf 52899999647778985556676158798809999999986129965515205-68768878788899-6777--65555
Q ss_pred CCCCCCCCCCCCCEEE----EC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 6456637666853798----19-989999999999999827899887788878883799899838986747775677878
Q gi|254780859|r 70 VSDLRAGPNGELPEVF----TK-SSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVED 144 (700)
Q Consensus 70 v~~gm~~~~~~g~~v~----t~-s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~ 144 (700)
|.|+|++..- ...|. .+ ++-.++.+ .+.-.|-... ......+..+.
T Consensus 78 v~d~~~IePl-~fpVikDLvVD~~~~~~k~~-~i~~~~~~~~---------------------------~~~~~~~~~pe 128 (491)
T PRK06259 78 VEDGMIIEPL-DFPVIKDLVVDREPYYKKIA-TLRNYLQAKN---------------------------EKISLEELTPE 128 (491)
T ss_pred CCCCCEEECC-CCCCEECCEEECHHHHHHHH-HHHHHCCCCC---------------------------CCCCCCCCCHH
T ss_conf 1688567348-88621001666299999999-7442216676---------------------------54211237999
Q ss_pred CCCCCHHC-CCHHHCCCCCHHHHHHHHCCCCCCEE-----EEC------CCCCCEEEECCC-CCCCCCCCCCEEECCCC
Q ss_conf 88560210-06432901002364543206874003-----330------666412662058-75556546622201212
Q gi|254780859|r 145 KSIGPLVK-TVMNRCIHCTRCVRFITEVAGVSELG-----LVG------RGENAEITTYLE-QSLTSEMQGNIIDLCPV 210 (700)
Q Consensus 145 ~~~~p~i~-~d~~rCI~C~RCVR~c~Ev~g~~~lg-----~~~------RG~~~~i~~~~~-~~~~~e~~Gncvd~CPv 210 (700)
+ +=+ ..-..||.|+-|+-.|..+.-.+-+| -.. |-...++...++ ..+.|..||+|+.+||-
T Consensus 129 ~----~~~~~~~~~CI~C~~C~s~Cp~~~~~dy~GP~~~~~~~Rf~~DpRD~~~r~~~a~~~gl~~Ct~C~~C~~vCPK 203 (491)
T PRK06259 129 D----IKDIKKLRGCIECLSCISMCPAIKVSDYPGPTFMRQLARFAFDPRDEGDREKEAIDEGLYNCTTCGKCVEVCPK 203 (491)
T ss_pred H----HHHHHHHHHCHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHCCC
T ss_conf 9----99888776345643237448767577786889999999861688776006899987797437635804443887
No 63
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.66 E-value=1.9e-08 Score=80.07 Aligned_cols=82 Identities=17% Similarity=0.347 Sum_probs=57.7
Q ss_pred HCCCCCCCCCCCC-CCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf 3898674777567-787888560210064329010023645432068740033306664126620587555654662220
Q gi|254780859|r 128 FGFGSSRYSEEKR-AVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIID 206 (700)
Q Consensus 128 ~g~~~~r~~~~k~-~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd 206 (700)
-+.-...|+++++ ..++.+-| .+.+|++|||.|+.|+++|- .++|.+...+....| ....|.+||.|++
T Consensus 14 ~kp~T~~YP~~~~~~~p~r~RG-~~~~d~dkCigC~~C~~~CP----~~aI~~~~~~~~~~i-----~~~~Ci~Cg~C~~ 83 (111)
T PRK08348 14 KKPATNLFPATEPVPVPENFRG-KILYNVDKCVGCRMCVTVCP----AGVFVYLPEIRKVAL-----WTGRCVFCGQCVD 83 (111)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCCCCHHHHHCC----CCCCEECCCCCEEEE-----CCCCCCCCCCCCC
T ss_conf 9981318988776689987678-20568552828072877593----220675277666787-----7790853887577
Q ss_pred CCCCCCCCCC-CCC
Q ss_conf 1212101223-323
Q gi|254780859|r 207 LCPVGALTSK-PFA 219 (700)
Q Consensus 207 ~CPvGALt~k-~~~ 219 (700)
+||++||+-. .|.
T Consensus 84 ~CP~~AI~~t~~~e 97 (111)
T PRK08348 84 VCPTGALQMSDDFL 97 (111)
T ss_pred CCCCCCEECCCEEE
T ss_conf 37728368768036
No 64
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.56 E-value=2.7e-08 Score=78.94 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEE--E-CCCCCCEEEECCC-CCCCCCCCCCEE
Q ss_conf 98674777567787888560210064329010023645432068740033--3-0666412662058-755565466222
Q gi|254780859|r 130 FGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGL--V-GRGENAEITTYLE-QSLTSEMQGNII 205 (700)
Q Consensus 130 ~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~--~-~RG~~~~i~~~~~-~~~~~e~~Gncv 205 (700)
.-+..|+++|...+..+- .++.+++..||-|+.|+++|-- .+|.+ . .......-..+.+ ....|.|||.|+
T Consensus 30 ~vT~~YP~e~~~~~~rfR-G~~~l~~~~CIgC~lCa~iCP~----~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~ 104 (172)
T COG1143 30 PVTIEYPEEKIPLSPRFR-GRHVLDRDKCIGCGLCANICPA----NAITMETAERKVDGRKKPKRPDINLGRCIFCGLCV 104 (172)
T ss_pred CCCHHCCCCCCCCCCCCC-CEEECCCCCCCCHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCHH
T ss_conf 730007665689998734-3442463578261688863984----73189976567888421334314335126117514
Q ss_pred ECCCCCCCCCCCC
Q ss_conf 0121210122332
Q gi|254780859|r 206 DLCPVGALTSKPF 218 (700)
Q Consensus 206 d~CPvGALt~k~~ 218 (700)
|+||||||...+.
T Consensus 105 e~CPt~Al~~t~~ 117 (172)
T COG1143 105 EVCPTGALVLTPE 117 (172)
T ss_pred HHCCHHHHCCCCC
T ss_conf 2396656227741
No 65
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.54 E-value=5.5e-08 Score=76.72 Aligned_cols=167 Identities=16% Similarity=0.249 Sum_probs=84.1
Q ss_pred EEEECCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE--CCH
Q ss_conf 99968887588999986895-461212799964560004799971798870200265664566376668537981--998
Q gi|254780859|r 13 EIEVPSGFTILQACELAGAE-IPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEVFT--KSS 89 (700)
Q Consensus 13 ~v~v~~g~til~a~~~~gi~-IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v~t--~s~ 89 (700)
+|++++++|||+|....--+ -|.|-|.-.- -.|-|--|.|.|.| .|++ ||.|.+.+.- ++..|.- +-|
T Consensus 27 ~v~~~~~~tvLd~L~~Ik~~~D~sL~fr~sC-r~giCGsCam~iNG-~~~L--AC~t~i~~~~-----~~i~iePl~~~p 97 (243)
T PRK12385 27 EVPYDETTSLLDALGYIKDNLDPDLSYRWSC-RMAICGSCGMMVNN-VPKL--ACKTFLRDYT-----DGMKVEALANFP 97 (243)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCEEECCC-CCCCCCCCEEEECC-EEEC--CEEEEHHHCC-----CCEEEEECCCCC
T ss_conf 9857999979999999985349982475578-99977626689899-6400--0254123268-----965997679996
Q ss_pred HHHHH---HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH--C-CCHHHCCCCCH
Q ss_conf 99999---999999998278998877888788837998998389867477756778788856021--0-06432901002
Q gi|254780859|r 90 MVKKA---RAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLV--K-TVMNRCIHCTR 163 (700)
Q Consensus 90 ~v~~~---r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i--~-~d~~rCI~C~R 163 (700)
.+|+. +...++-+-.-+|-= ....+...+.... ..|-- + .....||.|+=
T Consensus 98 VikDLvVD~~~f~~k~~~v~p~l--------------------~~~~~~~~~~~~~----~~p~~~~k~~~~~~CI~Cg~ 153 (243)
T PRK12385 98 IERDLVVDMTHFIESLEAIKPYI--------------------IGNDRTPDDGPNK----QTPAQMAKYHQFSGCINCGL 153 (243)
T ss_pred EEEEEEECCHHHHHHHHHCCCEE--------------------ECCCCCCCCCCCC----CCHHHHHHHHHHHHHHHCCH
T ss_conf 77677866399999866117722--------------------0588898632345----89789999860126655238
Q ss_pred HHHHHHHCCCCC------CEEEEC------C--CCC--CEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 364543206874------003330------6--664--126620587555654662220121210
Q gi|254780859|r 164 CVRFITEVAGVS------ELGLVG------R--GEN--AEITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 164 CVR~c~Ev~g~~------~lg~~~------R--G~~--~~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
|+-.|..+..+. +|.-.. | |.. ..+....+..+.|..||||+.+||-|-
T Consensus 154 C~saCp~~~~~~~flGPaal~~a~Rf~~D~RD~~~~eRl~~l~~~~Gv~~C~~~~~C~~vCPK~I 218 (243)
T PRK12385 154 CYAACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMAQLNGQNGVWSCTFVGYCSEVCPKHV 218 (243)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76428875668665599999999986049764236889997305798117988586137294898
No 66
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only; InterPro: IPR013352 This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. These proteins represent a subdivision within a larger family which includes proteins such as nuclear prelamin A recognition factor in animals. These proteins show some heterogeneity in terms of periplasmic, cytosolic or hydrogenosomic location, NAD or NADP dependence, and overall protein length.; GO: 0005506 iron ion binding, 0008901 ferredoxin hydrogenase activity, 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=98.52 E-value=2.8e-08 Score=78.82 Aligned_cols=69 Identities=36% Similarity=0.601 Sum_probs=64.2
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC---CCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 1006432901002364543206874003330666412662058755---56546622201212101223323
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSL---TSEMQGNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~---~~e~~Gncvd~CPvGALt~k~~~ 219 (700)
+..|+++|+.|.||+++|..++...+++..+++..+.+.+....++ .|..||+|+.+||+||++++...
T Consensus 2 ~~~~~~kc~~c~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~cgqc~~~c~~~~~~~~~~~ 73 (380)
T TIGR02512 2 IVRDMSKCILCGRCVRACTNVQIVGALGFLNRGGKTEVAPAFGRLLDESECISCGQCSLVCPVGAITEKDDV 73 (380)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 633431000111012110000100000001233321012110110111111234421012442100000012
No 67
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.52 E-value=8.1e-08 Score=75.47 Aligned_cols=163 Identities=24% Similarity=0.350 Sum_probs=94.3
Q ss_pred EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEE-----EEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEE
Q ss_conf 99968887588999986895461212799964560004-----7999717988702002656645663766685-37981
Q gi|254780859|r 13 EIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRM-----CLVEIKGIASKPQASCAMNVSDLRAGPNGEL-PEVFT 86 (700)
Q Consensus 13 ~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRm-----ClVeve~~~~k~~~sC~t~v~~gm~~~~~~g-~~v~t 86 (700)
+|.+.+|+|||+|....-=+ ..+.|+-.-+||| |-+.|.| .|++ ||.|.+.+-- ++ +.|.
T Consensus 23 ev~~~~~~~vLdaL~~Ik~e-----~d~~Lsfr~sCR~gICGSCam~ING-~prL--AC~t~~~~~~-----~~~i~ie- 88 (234)
T COG0479 23 EVPYDEGMTVLDALLYIKEE-----QDPTLSFRRSCREGICGSCAMNING-KPRL--ACKTLMKDLE-----EGVITIE- 88 (234)
T ss_pred EECCCCCCCHHHHHHHHHHH-----CCCCCCHHHHCCCCCCCCCEEEECC-CCCC--CHHHHHHHCC-----CCCEEEE-
T ss_conf 83388998399999999972-----5996003552107768866457998-2645--3122164556-----7836986-
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCHH--------CCCHH
Q ss_conf 99899999999999998278998-877888788837-998998389867477756778788856021--------00643
Q gi|254780859|r 87 KSSMVKKARAGVMEFLLINHPLD-CPICDQGGECDL-QDQAIFFGFGSSRYSEEKRAVEDKSIGPLV--------KTVMN 156 (700)
Q Consensus 87 ~s~~v~~~r~~vle~ll~nHpld-Cp~Cd~~GeC~L-Qd~~~~~g~~~~r~~~~k~~~~~~~~~p~i--------~~d~~ 156 (700)
||+ -|+ .=|| -|++..|...++-.+.-.+. ....-+++. ..+..
T Consensus 89 --------------------PL~~fpV-----IkDLVVD~~~f~~~~~~ikp~~~~~-~~~~~~~~~qspe~~~~~~~~~ 142 (234)
T COG0479 89 --------------------PLPNFPV-----IRDLVVDMEEFYEKLRKIKPYLIRD-DEPDPGERLQSPEEREKLDELS 142 (234)
T ss_pred --------------------ECCCCCC-----EEEEEECCHHHHHHHHCCCCCEECC-CCCCCCCCCCCHHHHHHHHHHH
T ss_conf --------------------7789983-----0122533289987534156605557-6678753337999999997554
Q ss_pred HCCCCCHHHHHHHHCCCCC------CEE------EECCC----CCCEEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 2901002364543206874------003------33066----64126620587555654662220121210122
Q gi|254780859|r 157 RCIHCTRCVRFITEVAGVS------ELG------LVGRG----ENAEITTYLEQSLTSEMQGNIIDLCPVGALTS 215 (700)
Q Consensus 157 rCI~C~RCVR~c~Ev~g~~------~lg------~~~RG----~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~ 215 (700)
.||.|+-|+-.|.-+.-.. +|- +-.|+ .+.++.-..+..+.|.+|+||+++||-|-=+.
T Consensus 143 ~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i~p~ 217 (234)
T COG0479 143 ECILCGCCTAACPSIWWNPDFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPA 217 (234)
T ss_pred HCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHH
T ss_conf 362144404228753236577688999999998549765341889985047887752616152314289999979
No 68
>pfam09326 DUF1982 Domain of unknown function (DUF1982). Members of this family of functionally uncharacterized domains are found in the C-terminal region of various prokaryotic NADH dehydrogenases.
Probab=98.45 E-value=5.9e-08 Score=76.45 Aligned_cols=47 Identities=40% Similarity=0.685 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
Q ss_conf 224221123211233444446563111224631248988523899999
Q gi|254780859|r 634 EIRPSATDGIYALAKKVGKMQKRNFVSTVENFYLANSIARASATMAQC 681 (700)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nfY~td~isr~S~tM~~c 681 (700)
++.+..|..+.... ....+....|...+.||||||+|||+|+||++|
T Consensus 2 ~v~~~~~~~~~~~~-~~~~~~~~pf~~~i~nfYmTdpIsRAS~tMAeC 48 (48)
T pfam09326 2 EVEPNGWTALALSA-AGGKLSKAPFRSPIKDFYLTDPISRASPTMAEC 48 (48)
T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCC
T ss_conf 53655674244467-766526764311345321026555400777558
No 69
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.45 E-value=1.5e-07 Score=73.48 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCCCCCCCC-HHCCC---HHHCCCCCHHHHHHHHCCCCCCEEEECCCC-CCEEEECCCCCCCCCCCCCEE
Q ss_conf 8674777567787888560-21006---432901002364543206874003330666-412662058755565466222
Q gi|254780859|r 131 GSSRYSEEKRAVEDKSIGP-LVKTV---MNRCIHCTRCVRFITEVAGVSELGLVGRGE-NAEITTYLEQSLTSEMQGNII 205 (700)
Q Consensus 131 ~~~r~~~~k~~~~~~~~~p-~i~~d---~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~-~~~i~~~~~~~~~~e~~Gncv 205 (700)
-+..|+++|+..+..+-|- .+.+| .+|||.|+-|.|+|-- ..-.+....+.. .-.+..|.=....|.|||.|+
T Consensus 29 vT~qYP~ek~~~~~r~RG~~~l~~d~~g~ekCi~C~lC~~~CP~--~~I~i~~~~~~~g~k~~~~~~Id~~rCifCGlCv 106 (172)
T PRK05888 29 VTIQYPEEKLPLSPRFRGRHALRRYPNGEERCIACKLCEAICPA--NAITIEAAEREDGRRRTTRYDINFGRCIFCGFCE 106 (172)
T ss_pred CHHCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCHHHHCCC--CCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 24009886476785523427764068887403577655655887--7678987508998577457775346057888822
Q ss_pred ECCCCCCCCCC
Q ss_conf 01212101223
Q gi|254780859|r 206 DLCPVGALTSK 216 (700)
Q Consensus 206 d~CPvGALt~k 216 (700)
++|||.||+-.
T Consensus 107 e~CP~~AI~~t 117 (172)
T PRK05888 107 EACPTDAIVET 117 (172)
T ss_pred CCCCCCCCCCC
T ss_conf 10888724478
No 70
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.26 E-value=6.8e-07 Score=68.81 Aligned_cols=171 Identities=19% Similarity=0.237 Sum_probs=84.5
Q ss_pred EEEEECCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--ECC
Q ss_conf 999968887588999986895-46121279996456000479997179887020026566456637666853798--199
Q gi|254780859|r 12 IEIEVPSGFTILQACELAGAE-IPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEVF--TKS 88 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~gi~-IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v~--t~s 88 (700)
-+|++.+|+|||+|....--+ -|.|-|.-.- -.|-|-.|.+.|.| +|++ +|.|.|.+-- .++...|. .+-
T Consensus 22 y~v~~~~~~tvLdaL~~Ik~~~d~slafr~~C-R~giCGsCam~ING-~~~l--aC~t~v~~~~---~~~~I~IePl~~f 94 (250)
T PRK12386 22 YTVEVNEGEVVLDIIHRLQATQAPDLAVRWNC-KAGKCGSCSAEING-RPRL--MCMTRMSTFD---EDETVTVTPMRTF 94 (250)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCEEECCC-CCCCCCCCEEEECC-EECH--HHHCCCHHCC---CCCEEEEEECCCC
T ss_conf 99418999809999999996159983386268-88867867525898-5335--6505402228---9981899757899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCHHCCCHHHCCCCCHHH
Q ss_conf 8999999999999982789988778887888379989983898674---7775677878885602100643290100236
Q gi|254780859|r 89 SMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSR---YSEEKRAVEDKSIGPLVKTVMNRCIHCTRCV 165 (700)
Q Consensus 89 ~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r---~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCV 165 (700)
|.+|+ .|-|.+ ..-+.....+.-... ...+.+..+.+. . -..+...||.|+=|+
T Consensus 95 pVIkD-----------------LvVD~s---~~~~k~~~v~~~~~~~~~~~~~~~~~pe~~-~--~~~~~~~CI~CgaC~ 151 (250)
T PRK12386 95 PVIRD-----------------LVTDVS---FNYEKAREIPSFAPPKDLQPGEYRMAQEDV-E--RSQEFRKCIECFLCQ 151 (250)
T ss_pred CCCCC-----------------CEECCC---HHHHHHHHCCCCCCCCCCCCCCCCCCHHHH-H--HHHHHHHHHHHHHHH
T ss_conf 71126-----------------555074---889863003631588999960012898889-9--999887755545545
Q ss_pred HHHHH----------CCCCCCE------EEECCCCC---CEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 45432----------0687400------33306664---126620587555654662220121210
Q gi|254780859|r 166 RFITE----------VAGVSEL------GLVGRGEN---AEITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 166 R~c~E----------v~g~~~l------g~~~RG~~---~~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
-.|.- ..|-.+| ..-.|+.. ..+.-..+....|..+|+|+.+||=|-
T Consensus 152 saCp~~~~~~~~~~~f~GP~al~ka~r~~~d~rD~~~~r~~~~~~~~G~~~C~~~~~C~~vCPK~I 217 (250)
T PRK12386 152 NVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTRDRRAEDAQEEHGLGYCNITKCCTEVCPENI 217 (250)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
T ss_conf 357866655334647738899999997443997559999998227888614988584203089999
No 71
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=98.20 E-value=6.7e-07 Score=68.86 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=55.4
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCC--CCCEEEE
Q ss_conf 82789988778887888379989983898674777567787888560210064329010023645432068--7400333
Q gi|254780859|r 103 LINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAG--VSELGLV 180 (700)
Q Consensus 103 l~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g--~~~lg~~ 180 (700)
|---||.|+=|-- .|-....|=+.+..+|||+|++||+.|..-.. +..+...
T Consensus 21 LKGCPLrC~WC~N--------------------------PEsq~~~~~~~f~~~~C~~C~~C~~~C~~~IHTkta~~~~~ 74 (305)
T TIGR02494 21 LKGCPLRCKWCSN--------------------------PESQRKSPELLFKENRCLGCGKCVEVCPAGIHTKTARLVER 74 (305)
T ss_pred ECCCCCCCCCCCC--------------------------CCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 0677888866588--------------------------87767651024200234430014543245423320677876
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 0666412662058755565466222012121012
Q gi|254780859|r 181 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 181 ~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
-.+. ..+ ......|+-||-|+++||++||.
T Consensus 75 ~~~~-~~~---~~~~~~c~~Cg~C~~~Cp~~Al~ 104 (305)
T TIGR02494 75 LDGR-NII---SIRREKCTGCGKCTEACPSGALE 104 (305)
T ss_pred HCCC-CCE---EECCCCCCCCCCHHHCCCCHHHH
T ss_conf 4178-601---00001774111011038400642
No 72
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.19 E-value=4.6e-07 Score=70.00 Aligned_cols=168 Identities=20% Similarity=0.294 Sum_probs=83.4
Q ss_pred EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCC-----CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9999688875889999868954612127999645-----60004799971798870200265664566376668537981
Q gi|254780859|r 12 IEIEVPSGFTILQACELAGAEIPRFCFHERLSIA-----GNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEVFT 86 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~-----g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v~t 86 (700)
-+|++.+|+|||+|....--++ .+.|+-. |-|--|-|.|.| .|+ .+|.|.+.+-- .++ ..|.
T Consensus 26 y~v~~~~~~tvLdaL~~Ike~~-----D~sLaFr~sCR~giCGSCam~ING-~p~--LAC~t~v~~~~---~~~-i~ie- 92 (240)
T PRK13552 26 YQLEETPGMTLFIALNLIREEQ-----DPSLQFDFVCRAGICGSCAMVING-RPT--LACRTLTSDYP---DGV-ITLM- 92 (240)
T ss_pred EEECCCCCCCHHHHHHHHHHHC-----CCCCEEECCCCCCCCCCCEEEECC-EEC--CCCCCCHHHCC---CCC-EEEE-
T ss_conf 9954899987999999999724-----997046514567767866678899-641--00004000068---995-7998-
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCH---HCCCHHHCC
Q ss_conf 9989999999999999827899-8877888788837998998389---86747775677878885602---100643290
Q gi|254780859|r 87 KSSMVKKARAGVMEFLLINHPL-DCPICDQGGECDLQDQAIFFGF---GSSRYSEEKRAVEDKSIGPL---VKTVMNRCI 159 (700)
Q Consensus 87 ~s~~v~~~r~~vle~ll~nHpl-dCp~Cd~~GeC~LQd~~~~~g~---~~~r~~~~k~~~~~~~~~p~---i~~d~~rCI 159 (700)
| |-|.|. .=.|-|...- ..++.-..+. .......+....+. +|- -..+...||
T Consensus 93 --P-------------l~~fpVIkDLVVD~~~f--~~~~~~~v~~~l~~~~~~~~~~~e~~~---~~e~~~~~~~~~~CI 152 (240)
T PRK13552 93 --P-------------LPVFKLIGDLSVNTGKW--FREMAERVESWLHTKKEFDIHRLEERM---EPEEAAEIYELDRCI 152 (240)
T ss_pred --E-------------CCCCCCCCCCEEECHHH--HHHHHHHCCCEECCCCCCCCCCCCCCC---CHHHHHHHHHHHHHH
T ss_conf --8-------------99996113565404899--999986165154269888866445778---999999999899988
Q ss_pred CCCHHHHHHHH------CCCCCCEEEE------CCCC--CC---EEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 10023645432------0687400333------0666--41---26620587555654662220121210
Q gi|254780859|r 160 HCTRCVRFITE------VAGVSELGLV------GRGE--NA---EITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 160 ~C~RCVR~c~E------v~g~~~lg~~------~RG~--~~---~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
.|+=|+-.|.- ..|-.+|.-. .|.. .. ++....+..+.|..||+|+.+||-|-
T Consensus 153 ~Cg~C~saCp~~~~~~~f~GPaal~~a~r~~~D~RD~~~~erl~~~~~~~~G~~~C~~~~~C~~vCPK~I 222 (240)
T PRK13552 153 ECGCCVAACATKQMRPDFVGAVGMNRIARFELDPRDERSDEDFYELIGNDDGVFGCMTLLGCEDNCPKDL 222 (240)
T ss_pred HHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC
T ss_conf 7530032385211153666889999988866188433579999998527888538999787237198899
No 73
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.18 E-value=3.6e-07 Score=70.77 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=40.3
Q ss_pred CCEEEEECCCCCHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999999688875889999868954-61212799964560004799971798870200265664566
Q gi|254780859|r 10 DGIEIEVPSGFTILQACELAGAEI-PRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLR 74 (700)
Q Consensus 10 dg~~v~v~~g~til~a~~~~gi~I-P~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm 74 (700)
+.-+|++++|+|||+|....--++ |.|-|... --.|-|--|.+.|.| ++++ ||.|.|.|-+
T Consensus 19 q~y~v~~~~~~tvLdaL~~Ik~~~D~sLafR~s-Cr~giCGSCam~ING-~~~L--AC~t~v~d~l 80 (330)
T PRK12577 19 QTYTLEVDPGNTILDCLNRIKWEQDGSLAFRKN-CRNTICGSCAMRING-RSAL--ACKENVGSEL 80 (330)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCEEEECC-CCCCCCCCCEEEECC-EEEE--EEECCCHHHH
T ss_conf 889973799987999999998623996354010-478667756555888-4201--3302005554
No 74
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.15 E-value=1.9e-06 Score=65.58 Aligned_cols=171 Identities=16% Similarity=0.265 Sum_probs=82.9
Q ss_pred EEEEECCCCCHHHHHHHC--------CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 999968887588999986--------895461212799964560004799971798870200265664566376668537
Q gi|254780859|r 12 IEIEVPSGFTILQACELA--------GAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPE 83 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~--------gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~ 83 (700)
-+|++.+|+|||+|.... |-..+.+-|.-.- -.|-|--|-|.|.| .|++ ||.|.+.+.- +...
T Consensus 23 y~v~~~~~~tvLdaL~~I~~~~~~~~ge~~~~l~fr~sC-R~giCGSCam~ING-~p~L--AC~t~~~~~~-----~~I~ 93 (252)
T PRK08640 23 FEIPYRPNMNVISALMEIRRNPVNIKGEKTTPVVWDMNC-LEEVCGACSMVING-KPRQ--ACTALIDQLE-----QPIR 93 (252)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCC-CCCCCCCCEEEECC-CCCH--HHHHHHHHCC-----CCEE
T ss_conf 996179998599999999861223335457871354256-77768878768899-2126--4563397649-----9339
Q ss_pred EE--ECCHHHHHH---HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHC
Q ss_conf 98--199899999---9999999982789988778887888379989983898674777567787888560210064329
Q gi|254780859|r 84 VF--TKSSMVKKA---RAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRC 158 (700)
Q Consensus 84 v~--t~s~~v~~~---r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rC 158 (700)
|. .+-|.+++. |...+|-|-.-+|.= + ....+.........+. .---..+...|
T Consensus 94 iePl~~fpVirDLvVD~~~~~~k~~~i~p~l-~-------------------~~~~~~~~~~~~~~~e-~~~~~~~~~~C 152 (252)
T PRK08640 94 LEPMSKFPVVRDLQVDRSRMFDNLKRVKAWI-P-------------------IDGTYDLGPGPRMPEE-KQQWAYELSKC 152 (252)
T ss_pred EEECCCCCCEEECEECCHHHHHHHHHHCCCC-C-------------------CCCCCCCCCCCCCCHH-HHHHHHHHHHH
T ss_conf 9868999610003663478999998636834-6-------------------6887788744567989-99998665666
Q ss_pred CCCCHHHHHHHHCCCC-CCEE---------E-E-CCCC-----CCEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 0100236454320687-4003---------3-3-0666-----4126620587555654662220121210
Q gi|254780859|r 159 IHCTRCVRFITEVAGV-SELG---------L-V-GRGE-----NAEITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 159 I~C~RCVR~c~Ev~g~-~~lg---------~-~-~RG~-----~~~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
|+|+=|+-.|..+... .-+| + . -||. +.++.-..+....|..||+|.++||-|-
T Consensus 153 I~Cg~C~saCp~~~~~~~f~GPaal~~a~r~~~dp~~d~~~~eRl~~~~~~~G~~~C~~~~~C~~vCPKgI 223 (252)
T PRK08640 153 MTCGCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIAGCGNSQNCVRVCPKGI 223 (252)
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
T ss_conf 65402322376121360002079999998611288877218999999647898207989687024088899
No 75
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.12 E-value=9.3e-07 Score=67.83 Aligned_cols=168 Identities=22% Similarity=0.287 Sum_probs=82.5
Q ss_pred EEEEEC---CCCCHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 999968---8875889999868954-612127999645600047999717988702002656645663766685379819
Q gi|254780859|r 12 IEIEVP---SGFTILQACELAGAEI-PRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEVFTK 87 (700)
Q Consensus 12 ~~v~v~---~g~til~a~~~~gi~I-P~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v~t~ 87 (700)
++++|+ +|+|||+|....--++ |.|-|.-.- -.|-|-.|-|.|.| +|+ .+|.|.|.+-- +| .|.
T Consensus 21 ~~y~v~~~~~~~tvLdaL~~Ik~~~D~slafr~sC-r~giCGSCam~ING-~~~--LAC~t~v~~~~-----~~-~I~-- 88 (235)
T PRK05950 21 QTYEVDVDDCGPMVLDALIKIKNEQDPTLTFRRSC-REGVCGSDAMNING-KNG--LACITPISDLK-----KG-KIV-- 88 (235)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCEEEECC-CCC--CCEEEEHHHCC-----CC-CEE--
T ss_conf 99994789999819999999986149975897178-98878767678899-412--23011700248-----99-589--
Q ss_pred CHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCC--CCCH---HCCCHHHCC
Q ss_conf 9899999999999998278998-87788878883799899838986--74777567787888--5602---100643290
Q gi|254780859|r 88 SSMVKKARAGVMEFLLINHPLD-CPICDQGGECDLQDQAIFFGFGS--SRYSEEKRAVEDKS--IGPL---VKTVMNRCI 159 (700)
Q Consensus 88 s~~v~~~r~~vle~ll~nHpld-Cp~Cd~~GeC~LQd~~~~~g~~~--~r~~~~k~~~~~~~--~~p~---i~~d~~rCI 159 (700)
+|= |-|.|.= =.+- |+...|..-. ..|-..+...+.+. ..|- -..+...||
T Consensus 89 -----------ieP-l~~fpVikDLvV---------D~~~~~~~~~~v~p~l~~~~~~~~~e~~~~pe~~~~~~~~~~CI 147 (235)
T PRK05950 89 -----------IRP-LPGLPVIKDLVV---------DMTQFYAQYRSIKPYLINDTPPPAKERLQSPEEREKLDGLYECI 147 (235)
T ss_pred -----------EEC-CCCCCCCCCCEE---------ECHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -----------953-656984454066---------24999852013753763799998422337988999988687614
Q ss_pred CCCHHHHHHHHCCCCC--CEEE-----EC------C----CCCCEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 1002364543206874--0033-----30------6----664126620587555654662220121210
Q gi|254780859|r 160 HCTRCVRFITEVAGVS--ELGL-----VG------R----GENAEITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 160 ~C~RCVR~c~Ev~g~~--~lg~-----~~------R----G~~~~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
.|+=|+-.|.-+.... -+|- .. | ..+.++.-..+..+.|..||+|.++||-|-
T Consensus 148 ~Cg~C~saCp~~~~~~~~flGP~al~~a~r~~~D~Rd~~~~eRl~~l~~~~G~~~C~~~~~C~~vCPK~I 217 (235)
T PRK05950 148 LCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGL 217 (235)
T ss_pred HHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
T ss_conf 1211574496650277566088999999875468765029999998607788107989587256287899
No 76
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.10 E-value=5.8e-06 Score=62.09 Aligned_cols=65 Identities=37% Similarity=0.608 Sum_probs=52.4
Q ss_pred EEEEE--CCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCC---------------CCCCCCCCC
Q ss_conf 49999--9999996888758899998689546121279996456000479997179---------------887020026
Q gi|254780859|r 5 VKLKV--DGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGI---------------ASKPQASCA 67 (700)
Q Consensus 5 v~~~I--dg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~---------------~~k~~~sC~ 67 (700)
|++.+ .|++++|++|+|||++++++||.||+.|.. |+|.+|.|+|... .+...-+|.
T Consensus 1 vtv~~~~~~~~~~v~~~~tlL~~~~~~gi~~~~~C~~------G~CgtC~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~ 74 (84)
T cd00207 1 VTINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRA------GACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQ 74 (84)
T ss_pred CEEEECCCEEEEEECCCCCHHHHHHHCCCCCCCCCCC------CCCCCCEEEEEECCCCCCCCCCCCHHHHHCCEEEEEE
T ss_conf 9899899638999897972999999849996613079------8568897899788274675545687786288798413
Q ss_pred CCCCCCCC
Q ss_conf 56645663
Q gi|254780859|r 68 MNVSDLRA 75 (700)
Q Consensus 68 t~v~~gm~ 75 (700)
+.+.++|+
T Consensus 75 ~~~~~d~~ 82 (84)
T cd00207 75 TRVTDGLV 82 (84)
T ss_pred CEECCCEE
T ss_conf 98888818
No 77
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=98.10 E-value=2.8e-06 Score=64.42 Aligned_cols=105 Identities=20% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEE
Q ss_conf 77888788837998998389867477756778788856021006432901002364543206874003330666412662
Q gi|254780859|r 111 PICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITT 190 (700)
Q Consensus 111 p~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~ 190 (700)
.-|--||+=-.+..+...|++.............+. +-..+.+.||-|++|+++|. .++|.+...+.+..
T Consensus 71 n~C~pGG~~~a~~IA~ilGve~~~~~~~~~~~~~~~---~a~i~~~~CiGcg~Cv~~CP----~dAI~~~~~~~~~V--- 140 (184)
T PRK05113 71 NKCPPGGEATMLKLAELLGVEPQPLDGEQAAEPVRK---VAFIDEDNCIGCTKCIQACP----VDAIVGATKAMHTV--- 140 (184)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---EEEECCCCCCCCCHHHHHCC----CCCEECCCCCCEEE---
T ss_conf 869998499999999997889644454334556762---58886524888681120199----46277689988697---
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 05875556546622201212101223323334443023
Q gi|254780859|r 191 YLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELT 228 (700)
Q Consensus 191 ~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~ 228 (700)
.+-.|.-||.|++.||+++++-.|....-+.|..-
T Consensus 141 ---~~d~C~gCg~Cv~~CP~~~I~lvP~~~t~~~w~w~ 175 (184)
T PRK05113 141 ---ISDLCTGCDLCVAPCPTDCIEMIPVAETPDNWKWD 175 (184)
T ss_pred ---CHHHCCCCCHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf ---86468083525465586736887688887777489
No 78
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=98.08 E-value=6.8e-07 Score=68.79 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=41.7
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 06432901002364543206874003330666412662058755565466222012121012233233344
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGR 223 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~R 223 (700)
.|.++||+|+.|++.|-|-+... -..+|.+ ....+ ...+|..||.|||+||.+||.-. .||+.+
T Consensus 221 ~~~~~C~~C~~C~~VCP~~~vir---~~l~~~~--~~~~v-~~~eCI~CG~CIDvC~~~al~f~-~r~~~~ 284 (287)
T PRK09477 221 HDREKCTRCMDCFHVCPEPQVLR---PPLKGKQ--SSPQV-LSGDCTTCGRCIDVCSEDVFNFT-IRFKSG 284 (287)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCC---HHHCCCC--CCCCC-CCCCCCCHHHHHHHHCCCCEEEE-EECCCC
T ss_conf 78875809235767579954244---4431444--46884-88310536599967181551544-212788
No 79
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I; InterPro: IPR010226 This entry represents the I subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain 'I' subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=98.07 E-value=1.1e-06 Score=67.37 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=53.9
Q ss_pred CCCCCCCCCC-CCCCCCHHCCCH----HHCCCCCHHHHHHHHCCCCCCEEEECCCCCC----E-----EEECCCCCCCCC
Q ss_conf 4777567787-888560210064----3290100236454320687400333066641----2-----662058755565
Q gi|254780859|r 134 RYSEEKRAVE-DKSIGPLVKTVM----NRCIHCTRCVRFITEVAGVSELGLVGRGENA----E-----ITTYLEQSLTSE 199 (700)
Q Consensus 134 r~~~~k~~~~-~~~~~p~i~~d~----~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~----~-----i~~~~~~~~~~e 199 (700)
.|+++|-..+ -.+-| -|.+.| +|||-|+-|+++|-- .+|.++.--.++ + ...|.=.-..|.
T Consensus 18 ~YP~e~~~LpypRfRG-~i~L~r~pG~e~CiaC~LC~~~CP~----~~I~~~~~~~~~enPv~~g~r~~~~y~In~grCi 92 (129)
T TIGR01971 18 QYPEEKLYLPYPRFRG-RIVLTRDPGEEKCIACELCARVCPA----DAIRVVTEERETENPVEDGKRRLKFYQINFGRCI 92 (129)
T ss_pred CCCCCCCCCCCCCCCE-EEEEEECCCCCEEECCCCEEECCCC----CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 7886776678897542-5876536997135643010000754----4415652038888873236523789621321222
Q ss_pred CCCCEEECCCCCCCCCCC
Q ss_conf 466222012121012233
Q gi|254780859|r 200 MQGNIIDLCPVGALTSKP 217 (700)
Q Consensus 200 ~~Gncvd~CPvGALt~k~ 217 (700)
|||+|.++|||.||...+
T Consensus 93 fCGlC~E~CP~~AI~lt~ 110 (129)
T TIGR01971 93 FCGLCEEACPTDAIVLTP 110 (129)
T ss_pred EEECCCCCCCCHHHHCCC
T ss_conf 330751127101543373
No 80
>KOG3256 consensus
Probab=98.03 E-value=2.1e-06 Score=65.25 Aligned_cols=96 Identities=22% Similarity=0.344 Sum_probs=65.1
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 278998877888788837998998389867477756--778788856021006432901002364543206874003330
Q gi|254780859|r 104 INHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEK--RAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVG 181 (700)
Q Consensus 104 ~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k--~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~ 181 (700)
..|-.+-|+- -++-++-|+...||..+. |.++ ..-+|||.|.-|++.|-- ....+....
T Consensus 74 Lsh~f~~p~T--------InYPfEKgplS~RFRGehalrRyp---------~geerCIACklCeavCPa--qaitieae~ 134 (212)
T KOG3256 74 LSHTFREPVT--------INYPFEKGPLSPRFRGEHALRRYP---------SGEERCIACKLCEAVCPA--QAITIEAEE 134 (212)
T ss_pred HHHHCCCCEE--------ECCCCCCCCCCCCCCCCHHHHCCC---------CCCHHHHHHHHHHHHCCC--CCCEEEEEE
T ss_conf 7764378713--------557412378880115612332178---------852121367888874874--454552221
Q ss_pred CCCCCEEEECCCCCC-CCCCCCCEEECCCCCCCCCCCC
Q ss_conf 666412662058755-5654662220121210122332
Q gi|254780859|r 182 RGENAEITTYLEQSL-TSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 182 RG~~~~i~~~~~~~~-~~e~~Gncvd~CPvGALt~k~~ 218 (700)
|-.-++=.+-.+-.| -|-+||+|+..|||-||.+.|-
T Consensus 135 r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegpn 172 (212)
T KOG3256 135 RTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 172 (212)
T ss_pred CCCCCCCCEEECCCCEEEEEECCHHHHCCCCCEECCCC
T ss_conf 37754210210445214656045364387231211687
No 81
>PRK05713 hypothetical protein; Provisional
Probab=97.99 E-value=1.1e-05 Score=59.96 Aligned_cols=47 Identities=36% Similarity=0.653 Sum_probs=42.7
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 04999999999968887588999986895461212799964560004799971
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIK 56 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve 56 (700)
|.+|.++|++++|++|+|||+||.++||.||+=|-. |+|..|.+.+.
T Consensus 1 ~~~~~~~~~~f~~~~getlL~aal~~gi~lp~~C~~------G~CgtCk~~l~ 47 (312)
T PRK05713 1 MPELRVGERRWTVPTGSNLLDALNAAGVAVPYSCRA------GSCHACLVRCL 47 (312)
T ss_pred CCCEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCC------CCCCCCEEEEE
T ss_conf 982678998999589983999999859986276969------06803677999
No 82
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.96 E-value=2.8e-06 Score=64.38 Aligned_cols=170 Identities=21% Similarity=0.320 Sum_probs=87.1
Q ss_pred ECCEEEEECCCCCHHHHHHHCCC-CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEE
Q ss_conf 99999996888758899998689-54612127999645600047999717988702002656645663766685-37981
Q gi|254780859|r 9 VDGIEIEVPSGFTILQACELAGA-EIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGEL-PEVFT 86 (700)
Q Consensus 9 Idg~~v~v~~g~til~a~~~~gi-~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g-~~v~t 86 (700)
.+--+|++++|+|||+|....-- .=|.|-|...- -.|-|--|.|.|.| ++++ ||.|.|.|--- .+.+ ..|.
T Consensus 20 ~~~y~v~~~~~~tvLd~L~~IK~~~D~sL~fR~sC-r~giCGSCam~ING-~~~L--AC~t~v~d~~~--~~~~~I~Ie- 92 (311)
T PRK12576 20 WQEYEVEVDRGTQVTEALRRIKEEQDPTLAYRASC-HMAVCGSCGMKING-EPRL--ACKTLVLDVAK--EGNNVVTVE- 92 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCC-CCCCCCCCEEEECC-CCCC--CEEEEHHHHHH--CCCCCEEEE-
T ss_conf 57999967999979999999996149972674478-88888757577899-3342--12205555410--569968998-
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHH-HHHHHHHCCCC--CCCCCCCCCC--CCC--CCC--CHHCC-CH
Q ss_conf 99899999999999998278998-877888788837-99899838986--7477756778--788--856--02100-64
Q gi|254780859|r 87 KSSMVKKARAGVMEFLLINHPLD-CPICDQGGECDL-QDQAIFFGFGS--SRYSEEKRAV--EDK--SIG--PLVKT-VM 155 (700)
Q Consensus 87 ~s~~v~~~r~~vle~ll~nHpld-Cp~Cd~~GeC~L-Qd~~~~~g~~~--~r~~~~k~~~--~~~--~~~--p~i~~-d~ 155 (700)
||. =|| .=|| -|+.-+|..-+ ..|-..+... +.. -.. .+-++ ..
T Consensus 93 --------------------PL~~~pV-----ikDLvVD~~~f~~k~~~vkPwl~~~~~~~~~~~e~~qspee~~~l~~~ 147 (311)
T PRK12576 93 --------------------PLDNFKV-----VRDLIVDFDEFYERMRKVKPRLYPREEVLEGKGEYRLLPEDQMELWKF 147 (311)
T ss_pred --------------------ECCCCCC-----CCCCEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf --------------------6899973-----222511369999998732762505888889864204799999988605
Q ss_pred HHCCCCCHHHHHHHHCCCCCCEEEEC--------------C--CCCCEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 32901002364543206874003330--------------6--664126620587555654662220121210
Q gi|254780859|r 156 NRCIHCTRCVRFITEVAGVSELGLVG--------------R--GENAEITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 156 ~rCI~C~RCVR~c~Ev~g~~~lg~~~--------------R--G~~~~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
..||+|+-|.-.|.-+..+.. +.| | +....+....+..+.|..|+||..+||-|-
T Consensus 148 ~~CIlCg~C~s~Cp~~~~n~~--ylGPaal~ka~R~~~DsRD~~~~eRl~~~~~Gvw~C~~c~~C~~vCPK~i 218 (311)
T PRK12576 148 AQCIWCGLCVSACPVVAIDEE--FLGPAALAKGYRFLADPRDTITEERIKILIDSAWRCTFCYSCSNVCPKDV 218 (311)
T ss_pred HHCHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
T ss_conf 434225078601899687988--65889999999874688765189999998548716621643675588999
No 83
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.87 E-value=3.7e-06 Score=63.51 Aligned_cols=162 Identities=19% Similarity=0.242 Sum_probs=79.5
Q ss_pred EEEEEC---CCCCHHHHHHHCCCCCCCCCCCCCCCCCCEE-----EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 999968---8875889999868954612127999645600-----04799971798870200265664566376668537
Q gi|254780859|r 12 IEIEVP---SGFTILQACELAGAEIPRFCFHERLSIAGNC-----RMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPE 83 (700)
Q Consensus 12 ~~v~v~---~g~til~a~~~~gi~IP~~Cy~~~l~~~g~C-----RmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~ 83 (700)
++++|+ +++|||++....--. .+.|+-.-+| -.|-|.|.| +|++ +|.|.+++-. +...
T Consensus 23 ~~y~v~~~~~~~tvLd~L~~ik~~------D~tLaFr~sCR~gICGSCam~ING-~~~L--AC~t~v~~~~-----~~i~ 88 (235)
T PRK12575 23 QRYELAPRAEDRMLLDVLGRVKAQ------DETLSYRRSCREGVCGSDAMNING-RNGL--ACVTSMQALP-----REIV 88 (235)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHC------CCCEEEECCCCCCCCCCCEEEECC-CCCC--CEEEEHHHCC-----CCEE
T ss_conf 899958688987199999999824------998366457889978778758899-8665--4787866657-----8559
Q ss_pred EEECCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCC--CCCH--HCC-CH
Q ss_conf 9819989999999999999827899-887788878883799899838986--74777567787888--5602--100-64
Q gi|254780859|r 84 VFTKSSMVKKARAGVMEFLLINHPL-DCPICDQGGECDLQDQAIFFGFGS--SRYSEEKRAVEDKS--IGPL--VKT-VM 155 (700)
Q Consensus 84 v~t~s~~v~~~r~~vle~ll~nHpl-dCp~Cd~~GeC~LQd~~~~~g~~~--~r~~~~k~~~~~~~--~~p~--i~~-d~ 155 (700)
+|= |-|.|+ -=.|- |++..|..-. ..|...+...++++ ..|- -++ ..
T Consensus 89 ---------------IeP-l~~fpVIkDLVV---------D~~~~~~~~~~v~p~~~~~~~~~~~e~~~~p~~~~~~~~~ 143 (235)
T PRK12575 89 ---------------LRP-LPGLPVVRDLIV---------DMTSFFNQYHSVRPYLVNEGVPPERERLQTPQEREQLDGL 143 (235)
T ss_pred ---------------EEE-CCCCCCCCCCEE---------CCHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf ---------------998-999962223266---------0399998755224386148998851233798899988728
Q ss_pred HHCCCCCHHHHHHHHCC-------CCCCEEEECC------CC--C--CEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 32901002364543206-------8740033306------66--4--126620587555654662220121210
Q gi|254780859|r 156 NRCIHCTRCVRFITEVA-------GVSELGLVGR------GE--N--AEITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 156 ~rCI~C~RCVR~c~Ev~-------g~~~lg~~~R------G~--~--~~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
..||.|+=|+-.|.-+. |-.+|--..| .. . ....-..+..+.|..||+|.++||-|-
T Consensus 144 ~~CI~Cg~C~saCp~~~~~~~~f~GP~al~~a~r~~~D~RD~~~~erl~~l~~~~g~~~C~~~~~C~~vCPK~I 217 (235)
T PRK12575 144 YECILCACCSSACPSYWWNPDKFVGPAGLLQAYRFIVDSRDDASAARLDDLEDPYRLFRCRTIMNCVDVCPKGL 217 (235)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
T ss_conf 87550333886646610085356086888877662158631459999998417898508988588246287899
No 84
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.86 E-value=2.5e-05 Score=57.44 Aligned_cols=108 Identities=24% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCCEEEEECCEEEE--ECCCCCHHHHHH-HCCCCCCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61049999999999--688875889999-868954612-12799964560004799971798870200265664566376
Q gi|254780859|r 2 QMMVKLKVDGIEIE--VPSGFTILQACE-LAGAEIPRF-CFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGP 77 (700)
Q Consensus 2 ~~mv~~~Idg~~v~--v~~g~til~a~~-~~gi~IP~~-Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~ 77 (700)
+|+|+++|||++++ |.|.++++++.+ ..|.--+++ |+ .|.|+-|.|-++| +++-||.+|+..
T Consensus 1 ~~~i~ltvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~------~g~CGACtVlvDG---~~v~SCl~~a~~----- 66 (156)
T COG2080 1 KMPITLTVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG------HGQCGACTVLVDG---EAVNSCLTLAVQ----- 66 (156)
T ss_pred CCCEEEEECCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCC------CCCCCCEEEEECC---EEEHHHHHHHHH-----
T ss_conf 96179998995889975899829999998528877677888------7237950999999---584178899999-----
Q ss_pred CCCCCEEEECCHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 668537981998999999--99999998278998877888788837998
Q gi|254780859|r 78 NGELPEVFTKSSMVKKAR--AGVMEFLLINHPLDCPICDQGGECDLQDQ 124 (700)
Q Consensus 78 ~~~g~~v~t~s~~v~~~r--~~vle~ll~nHpldCp~Cd~~GeC~LQd~ 124 (700)
-+|-+|.|---..++.. +-|-+-.+-+|-..|-.|+-|=-+-.-++
T Consensus 67 -~~G~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~l 114 (156)
T COG2080 67 -AEGAEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATAL 114 (156)
T ss_pred -HCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf -579859974222678887578999999829975788848899999999
No 85
>PRK13984 putative oxidoreductase; Provisional
Probab=97.86 E-value=3.5e-06 Score=63.63 Aligned_cols=76 Identities=17% Similarity=0.374 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECC-CCCCEEEECCCCCC----CCCCCCCEEECCCC
Q ss_conf 77567787888560210064329010023645432068740033306-66412662058755----56546622201212
Q gi|254780859|r 136 SEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGR-GENAEITTYLEQSL----TSEMQGNIIDLCPV 210 (700)
Q Consensus 136 ~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R-G~~~~i~~~~~~~~----~~e~~Gncvd~CPv 210 (700)
+..+|..-..|-| |-.-|.++||-|+.|+-+|. .+++.|+.- ....+.+.-..++- .|++|..|||+|||
T Consensus 26 ~~~~~~~~~~~~~-~~~~~~ekcigc~~c~~~cp----~~~~~~v~~~~~~~~~~~~~~~~~~~~~r~~~~~~cv~~c~t 100 (604)
T PRK13984 26 PNVKREAAERYRG-FHINDWEKCIGCGTCAKICP----TDAITMVEVEDLPQEYGKKPQRPVIDYGRCSFCALCVDICTT 100 (604)
T ss_pred CCCCCCCHHHHCC-CCCCCHHHCCCCCCHHHHCC----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCH
T ss_conf 8756430155446-53362655258752555189----886489963676631245766664234766633899865771
Q ss_pred CCCCCC
Q ss_conf 101223
Q gi|254780859|r 211 GALTSK 216 (700)
Q Consensus 211 GALt~k 216 (700)
|||+-.
T Consensus 101 ~~l~~~ 106 (604)
T PRK13984 101 GSLKMT 106 (604)
T ss_pred HHHHHH
T ss_conf 277888
No 86
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.80 E-value=8.6e-06 Score=60.85 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=35.3
Q ss_pred CCCHHHCCCCCHHHHHHHHCCCCC-------CEEEE-----CCCCCCEE--EE-CCCCCCCCCCCCCEEECCCCCC
Q ss_conf 006432901002364543206874-------00333-----06664126--62-0587555654662220121210
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITEVAGVS-------ELGLV-----GRGENAEI--TT-YLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~Ev~g~~-------~lg~~-----~RG~~~~i--~~-~~~~~~~~e~~Gncvd~CPvGA 212 (700)
.++..+||+|+=|+-.|....... .++.. .|..+..- .. ..+....|..|+||+++||-|-
T Consensus 153 ~~~~~~CI~Cg~C~saCPn~~~~~f~ga~~~~~~~~~~~~~~r~~r~~~~~~~~~~~G~~~C~~~~~C~~vCPK~I 228 (247)
T PRK07570 153 AMDAAACIGCGACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVDAMDEEGFGNCSNTGECEAVCPKGI 228 (247)
T ss_pred HHCHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4352330113344410898622233257664302375650557789999999874588658988687014087999
No 87
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=97.79 E-value=7e-05 Score=54.29 Aligned_cols=66 Identities=27% Similarity=0.436 Sum_probs=52.7
Q ss_pred CEEEEECC---EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC-----------------
Q ss_conf 04999999---9999688875889999868954612127999645600047999717988702-----------------
Q gi|254780859|r 4 MVKLKVDG---IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ----------------- 63 (700)
Q Consensus 4 mv~~~Idg---~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~----------------- 63 (700)
-|+|+||| ++++|+.|.++|++...+||.||-=| +--|.|-+|-|.|....+.+.
T Consensus 34 ~v~i~in~d~~~~~~~~~G~~LL~~L~~~~iflpSaC-----GG~gtCg~Ck~~v~~ggg~~l~te~~~~~~~e~~~g~R 108 (408)
T PRK05464 34 DVTIKINDDPEKTITVPAGGKLLGALASSGIFVSSAC-----GGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWR 108 (408)
T ss_pred CEEEEECCCCCCEEEECCCHHHHHHHHHCCCCCCCCC-----CCCCEEECCEEEEECCCCCCCCCCCCCCCHHHHHCCCE
T ss_conf 5799987986640675683048998864893622378-----99964504399994598866402101169989964967
Q ss_pred CCCCCCCCCCC
Q ss_conf 00265664566
Q gi|254780859|r 64 ASCAMNVSDLR 74 (700)
Q Consensus 64 ~sC~t~v~~gm 74 (700)
-||..+|++.|
T Consensus 109 LsCQv~vk~dm 119 (408)
T PRK05464 109 LSCQVKVKQDM 119 (408)
T ss_pred EEEEEECCCCC
T ss_conf 74227736786
No 88
>CHL00065 psaC photosystem I subunit VII
Probab=97.79 E-value=7.9e-06 Score=61.10 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=44.1
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEECC-CCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 064329010023645432068740033306-6641266205875556546622201212101223323
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVGR-GENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R-G~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~ 219 (700)
...++||.|++|||+|-- ++|.++.+ |....-....-..-+|..||.|+++||++||.-+-|.
T Consensus 6 ~~~D~CiGC~~Cvr~CP~----dviemvp~dg~k~~q~~~~~R~EdCiGC~~Ce~aCPtdalS~r~~~ 69 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPT----DVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred EEEEECCCHHHHHHHCCC----CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 764343685789886883----0100123445554533566761327666535355899861689961
No 89
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=97.79 E-value=1.4e-05 Score=59.29 Aligned_cols=104 Identities=25% Similarity=0.404 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH-CCCCCCCC-----CCCCCCCC--CCCCCHHCCCHHHCC
Q ss_conf 98999999999999982789988778887888379989983-89867477-----75677878--885602100643290
Q gi|254780859|r 88 SSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFF-GFGSSRYS-----EEKRAVED--KSIGPLVKTVMNRCI 159 (700)
Q Consensus 88 s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~-g~~~~r~~-----~~k~~~~~--~~~~p~i~~d~~rCI 159 (700)
.+.+-+.=+.|++ ||--|.|+ +|-=-++.- |.+..||+ .|||.+-. +.|- .++||
T Consensus 640 ~~~~~eFV~nv~~----------pi~~q~GD-~lpVS~~~~~GmeDG~fPlGTt~~EKRgvA~~vP~W~------~d~Ci 702 (1194)
T TIGR02176 640 AEDAPEFVKNVVR----------PIAAQEGD-DLPVSAFPARGMEDGTFPLGTTAFEKRGVALEVPVWK------SDNCI 702 (1194)
T ss_pred CCCCCHHHHHHHH----------HHHHCCCC-CCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC------CCCCC
T ss_conf 7747478999888----------88625889-8765777438886888862020034531203187056------56653
Q ss_pred CCCHHHHHHH------------HCC----CCCCEEEECCCCC---CEEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf 1002364543------------206----8740033306664---12662058755565466222012121
Q gi|254780859|r 160 HCTRCVRFIT------------EVA----GVSELGLVGRGEN---AEITTYLEQSLTSEMQGNIIDLCPVG 211 (700)
Q Consensus 160 ~C~RCVR~c~------------Ev~----g~~~lg~~~RG~~---~~i~~~~~~~~~~e~~Gncvd~CPvG 211 (700)
+|+.|+=+|- |.. |.-++...|++++ =+|-- .++||.=||||||+||==
T Consensus 703 qCnqCa~VCPHaaIR~~l~~~ee~~~AP~~F~~~d~kGK~~~g~kyrIQv---s~~DCtGCglCvd~CPa~ 770 (1194)
T TIGR02176 703 QCNQCAFVCPHAAIRPFLLDEEELEKAPEGFKSLDAKGKELEGLKYRIQV---SVEDCTGCGLCVDICPAK 770 (1194)
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCEEECCCCCCCCCCCEEEEE---CCCCCCCCCCCCCCCCCC
T ss_conf 47885433764787776427157635898647713436788987006874---275035763420358588
No 90
>CHL00134 petF ferredoxin; Validated
Probab=97.75 E-value=4.8e-05 Score=55.44 Aligned_cols=63 Identities=30% Similarity=0.506 Sum_probs=44.8
Q ss_pred EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEE-CC---------------CCCCCCCCCCCCCCCCCC
Q ss_conf 99996888758899998689546121279996456000479997-17---------------988702002656645663
Q gi|254780859|r 12 IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEI-KG---------------IASKPQASCAMNVSDLRA 75 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVev-e~---------------~~~k~~~sC~t~v~~gm~ 75 (700)
.+++|++|+|||+||+++||.+|+=|- .|.|..|.+.+ +| .++...+-++.|.+| +
T Consensus 17 ~t~~v~~~etiL~aa~~~Gi~lp~~Cr------~G~CgtC~~~l~~G~V~~~~~~~L~~~e~~~G~~L~C~a~p~sD-~- 88 (99)
T CHL00134 17 VTIDCPDDQYILDAAEEQGIDLPYSCR------AGACSTCAGKVTEGTVDQSDQSFLDDDQINAGFVLTCVAYPTSD-C- 88 (99)
T ss_pred EEEEECCCCCHHHHHHHCCCCCCCCCC------CCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCEEEEECCEECCC-E-
T ss_conf 999939898099999885999786678------80699884499882485064668999999799189724989988-8-
Q ss_pred CCCCCCCEEEECCH
Q ss_conf 76668537981998
Q gi|254780859|r 76 GPNGELPEVFTKSS 89 (700)
Q Consensus 76 ~~~~~g~~v~t~s~ 89 (700)
+|.|..|
T Consensus 89 -------~Iet~~e 95 (99)
T CHL00134 89 -------TILTHQE 95 (99)
T ss_pred -------EEEECCC
T ss_conf -------9984774
No 91
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.72 E-value=6.7e-05 Score=54.43 Aligned_cols=49 Identities=31% Similarity=0.525 Sum_probs=42.0
Q ss_pred CCCCEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 9610499999999996888758899998689546121279996456000479997
Q gi|254780859|r 1 MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEI 55 (700)
Q Consensus 1 ~~~mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVev 55 (700)
|.+=|+|.=.|+++++++|+|||+|+.++||.||+=|- .|+|..|.+.+
T Consensus 1 m~~~v~i~p~g~~~~~~~~etlL~aa~~~gi~~p~~C~------~G~Cg~Ck~~~ 49 (337)
T PRK07609 1 MSFQVTLQPSGRQFTVEPDETILDAALRQGIHLPYSCK------NGACGSCKAKL 49 (337)
T ss_pred CCEEEEEECCCEEEEECCCCHHHHHHHHCCCCCCCCCC------CCCCCCCEEEE
T ss_conf 93599995498399979999699999986998747899------91370388999
No 92
>PTZ00038 ferredoxin; Provisional
Probab=97.72 E-value=4.9e-05 Score=55.40 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=49.8
Q ss_pred CEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEE-CC---------------CCCCCCCCCCCCCCCCC
Q ss_conf 999996888758899998689546121279996456000479997-17---------------98870200265664566
Q gi|254780859|r 11 GIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEI-KG---------------IASKPQASCAMNVSDLR 74 (700)
Q Consensus 11 g~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVev-e~---------------~~~k~~~sC~t~v~~gm 74 (700)
++++++++.++|||||+++||++|+=|- .|+|-.|.+.+ +| .++...+-|+.|.+|..
T Consensus 87 ~~~ieC~eDE~ILDAAer~GI~LPySCR------~G~CgTCkakLisGeVd~sd~~~L~deE~a~GyvLtC~A~P~SD~v 160 (172)
T PTZ00038 87 EKVIECDEDEYILEAAERQGVELPYSCR------GGSCSTCAAKLVEGEVDNEDQSYLDDEQLKKGYCLLCTCYAKSDCT 160 (172)
T ss_pred CEEEECCCCCHHHHHHHHCCCCCCCCCC------CCCCCCCEEEEEEEEEECCCCCCCCHHHHHCCCEEEECCEECCCEE
T ss_conf 7768689986599999984998777777------8618888179998148536367899899968928988388987779
Q ss_pred CCCCCCCCEEEECCHH
Q ss_conf 3766685379819989
Q gi|254780859|r 75 AGPNGELPEVFTKSSM 90 (700)
Q Consensus 75 ~~~~~~g~~v~t~s~~ 90 (700)
|.|+-|.
T Consensus 161 ---------IET~~Ed 167 (172)
T PTZ00038 161 ---------IETHKED 167 (172)
T ss_pred ---------EEECCHH
T ss_conf ---------9926536
No 93
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.72 E-value=1.3e-05 Score=59.58 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=43.0
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC--CCCCCC--CEEECCCCCCCC
Q ss_conf 432901002364543206874003330666412662058755--565466--222012121012
Q gi|254780859|r 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSL--TSEMQG--NIIDLCPVGALT 214 (700)
Q Consensus 155 ~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~--~~e~~G--ncvd~CPvGALt 214 (700)
..+||.|+.||++|- .+.|.+..-+....++|+.=.+- .|++|. -||.+||+|||-
T Consensus 58 L~~CirCG~Cv~aCP----y~tl~la~~~~~~~~GTPy~~pr~~pC~mC~dipCv~aCPTGALd 117 (254)
T PRK09476 58 LSACIRCGLCVQACP----YDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALD 117 (254)
T ss_pred HHHCCHHCCHHHHCC----HHHEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 996303240365587----624332666678747882155565772047897531568866468
No 94
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.68 E-value=1.8e-05 Score=58.61 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEE--
Q ss_conf 43290100236454320687400333066641266205875-556546622201212101223323334443023522--
Q gi|254780859|r 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQS-LTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTD-- 231 (700)
Q Consensus 155 ~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~-~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~-- 231 (700)
..+|+.|+.||.+|.+- .| .+|..-. ++++-. -.|+|||.|+++||+|||..+ ..++|.++..-
T Consensus 34 ~~~CtrCg~Cv~aCp~~----ii---~~~~~g~--P~ldf~~~~C~~C~~C~~aCPtgal~~~----~~~~~~~~~~i~~ 100 (164)
T PRK10194 34 LTHCTRCDACINACENN----IL---QRGAGGY--PSVNFKNNECSFCYACAQACPESLFSPR----HTRAWDLQFTIGD 100 (164)
T ss_pred HHHCCCHHHHHHHCCHH----HH---CCCCCCC--EEEEECCCCCCCCHHHHHHCCHHHCCCC----CCCCCCCEEEECC
T ss_conf 98785684999873998----74---2288995--5887467888883467877577545944----3564462352054
Q ss_pred -------ECCCCCCCCC
Q ss_conf -------0121168864
Q gi|254780859|r 232 -------SIDVMDALGS 241 (700)
Q Consensus 232 -------SvC~~C~~GC 241 (700)
+.|..|.--|
T Consensus 101 ~Cl~~~~~~C~~C~d~C 117 (164)
T PRK10194 101 ACLAYQSVECRRCQDSC 117 (164)
T ss_pred CCCCCCCCCCCHHHHHC
T ss_conf 33058998200022248
No 95
>PRK06991 ferredoxin; Provisional
Probab=97.67 E-value=4.7e-05 Score=55.52 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEE
Q ss_conf 77888788837998998389867477756778788856021006432901002364543206874003330666412662
Q gi|254780859|r 111 PICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITT 190 (700)
Q Consensus 111 p~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~ 190 (700)
--|.-||+=-++.++-..|.....+..... .+... .+-..|.+.||-||+|+++|- +++|--..+..|+.|.-
T Consensus 43 n~CpPGG~~~~~~LA~lLg~~~~~ld~~~~-~~~p~--~VA~IdE~~CIGCT~CI~aCP----VDAIvGA~k~mHtVi~d 115 (274)
T PRK06991 43 NRCPPGGAEGIARLAALLGKPVIPLDPARG-VERPR--AVAFIDEQLCIGCTLCMQACP----VDAIVGAPKQMHTVVAD 115 (274)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCC--EEEEECCCCCCCCHHHHHCCC----CHHEECCCCCCEEECHH
T ss_conf 869998299999999986889777773337-76786--378965887817203431198----00155267766165642
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 0587555654662220121210122332
Q gi|254780859|r 191 YLEQSLTSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 191 ~~~~~~~~e~~Gncvd~CPvGALt~k~~ 218 (700)
.|.=|+-||+.|||--+.-.|.
T Consensus 116 ------~CTGCeLCI~pCPvDCI~MvPv 137 (274)
T PRK06991 116 ------LCTGCDLCVPPCPVDCIDMVPV 137 (274)
T ss_pred ------HCCCCCCCCCCCCCCCEEEEEC
T ss_conf ------1899672456698320154445
No 96
>pfam00111 Fer2 2Fe-2S iron-sulfur cluster binding domain. Several members of the Prosite family are not included since they only contain the active site.
Probab=97.67 E-value=5.8e-05 Score=54.87 Aligned_cols=44 Identities=45% Similarity=0.797 Sum_probs=38.8
Q ss_pred EEECCE--EEEECCCCC-HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 999999--999688875-88999986895461212799964560004799971
Q gi|254780859|r 7 LKVDGI--EIEVPSGFT-ILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIK 56 (700)
Q Consensus 7 ~~Idg~--~v~v~~g~t-il~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve 56 (700)
+++||+ ++++++|.| ||+|++.+|+.||+.|.. |.|..|.|+|.
T Consensus 1 ~~~~g~~~~~~~~~~~t~lL~a~~~~g~~i~~~C~~------G~CgtC~v~v~ 47 (78)
T pfam00111 1 VTVNGKGVTIEVPDGETTLLDAAEEAGIDIPYSCRG------GGCGTCAVKVL 47 (78)
T ss_pred CEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCC------EECCCCEEEEE
T ss_conf 999997069998899768999999859997466898------48079988998
No 97
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.66 E-value=2.6e-05 Score=57.42 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=79.5
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCCCEEEECC---------CC-CCEEEECC-------C--------CCCCCCCCC--C
Q ss_conf 10064329010023645432068740033306---------66-41266205-------8--------755565466--2
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVSELGLVGR---------GE-NAEITTYL-------E--------QSLTSEMQG--N 203 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R---------G~-~~~i~~~~-------~--------~~~~~e~~G--n 203 (700)
..+|.+|||-|..||.+|+|..+........+ +. .+.|..+. + -+-.|-.|. .
T Consensus 41 mLiD~TkCiGCraCvvACke~N~~~~~p~~~~~~~~p~dLs~~t~~vI~~~~~~~~~~~~~~~~~~~fv~~~C~HC~~P~ 120 (329)
T PRK10882 41 MLYDSTLCVGCQACVTKCQEINFPERNPDGEQTWDNPDKLSPYTNNIIKVWKSGTGVNKDQEENGYAYIKKQCMHCVDPN 120 (329)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCH
T ss_conf 99888907581899999999757888886666444665578862257888733654346677765146676797989986
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECC-CCCCCCCHHHHC
Q ss_conf 2201212101223323334443023522012116886436675159999885247888777741135-542210000000
Q gi|254780859|r 204 IIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISD-KTRFIWDGLKVQ 282 (700)
Q Consensus 204 cvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~-KGRf~~d~~~~d 282 (700)
|+++|||||++-.+. .-..-++ +..=.-|.+|-..|...+=-.+. -.....+.+.-+|- +| | |
T Consensus 121 C~~~CP~gA~~k~~~-~G~V~~d-~~~CiGC~~C~~aCP~~iP~~~~------~~~~~~i~KC~~C~~~~---~-----d 184 (329)
T PRK10882 121 CVSVCPVSALTKDPK-TGIVHYD-KDVCTGCRYCMVACPFNVPKYDY------NNPFGAIHKCELCNQKG---V-----E 184 (329)
T ss_pred HHHHCCCCCEEECCC-CCEEEEC-CCEECCCCHHHHCCCCCCCCCCC------CCCCCCEEECCCCCCCC---H-----H
T ss_conf 674099775587689-9549971-57007710675439999974235------57898641388987853---2-----5
Q ss_pred CCCHHHEEC------CCCEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 011011002------2220232414566888752013445
Q gi|254780859|r 283 RLDCPYARI------NGRLKPVSWDYALKAIKSAVLSSDV 316 (700)
Q Consensus 283 RL~~PliR~------~g~~~~iSWdeAl~~ia~~L~~~~~ 316 (700)
||..-+.=. -|-+.==..||-|.++.++|....+
T Consensus 185 Ri~~G~~PACv~aCPtgAl~FG~R~ell~~A~~Ri~~~p~ 224 (329)
T PRK10882 185 RLDKGGLPGCVEVCPTGAVIFGTREELLAEAKRRLALKPG 224 (329)
T ss_pred HHHCCCCCCCHHHCCCCCCEECCHHHHHHHHHHHHHHCCC
T ss_conf 8878998704513742334325899999999999984899
No 98
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.66 E-value=0.00011 Score=52.76 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=70.3
Q ss_pred CEEEEECCEEEE--ECCCCCHHHHHHH-CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 049999999999--6888758899998-6895461212799964560004799971798870200265664566376668
Q gi|254780859|r 4 MVKLKVDGIEIE--VPSGFTILQACEL-AGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGE 80 (700)
Q Consensus 4 mv~~~Idg~~v~--v~~g~til~a~~~-~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~ 80 (700)
||+|+|||++++ +++++++|++.+. .|..=+++-= -.|.|.-|.|-|+| +|+.||.+|+.. -+
T Consensus 1 ~i~~~vNG~~~~~~v~~~~~Lld~LR~~lgltgtK~GC-----~~G~CGACTVlvdG---~~v~SCl~~a~~------~~ 66 (148)
T TIGR03193 1 LLRLTVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGC-----DGGECGACTVLVDG---RPRLACSTLAHR------VA 66 (148)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHCCCCCCCCCCC-----CCCCCCCCEEEECC---CCCCCHHHHHHH------HC
T ss_conf 97999999998853799899999987306996058885-----88888774899999---185502847998------58
Q ss_pred CCEEEEC-----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 5379819-----9899999999999998278998877888788
Q gi|254780859|r 81 LPEVFTK-----SSMVKKARAGVMEFLLINHPLDCPICDQGGE 118 (700)
Q Consensus 81 g~~v~t~-----s~~v~~~r~~vle~ll~nHpldCp~Cd~~Ge 118 (700)
|.+|.|- .++....|+ -.+.+|-..|-.|.-|=-
T Consensus 67 g~~I~TvEGl~~~~~l~~vQ~----af~~~~a~QCGfCtPG~v 105 (148)
T TIGR03193 67 GRKVETVEGLATNGRLSRLQQ----AFHERLGTQCGFCTPGMI 105 (148)
T ss_pred CCEEEEECCCCCCCCCCHHHH----HHHHCCCCCCCCCCHHHH
T ss_conf 936997424466887479999----999828987798844799
No 99
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=97.65 E-value=1.6e-05 Score=58.84 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=39.8
Q ss_pred CCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 00643290100236454320687400333066641266205875556546622201212101223
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k 216 (700)
..|.++||+|+.|+++|-+ .+|.+.+.|.. . + ..-.|.-||.|+++||++|+.--
T Consensus 47 vid~dkCi~Cg~C~~~CP~----~AI~~de~g~~---~--i-D~d~C~GCG~Ca~~CP~~AI~mv 101 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPE----PAIYLDEEGYP---V--F-DYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred EECHHHCCCCCCHHHHCCC----CEEEECCCCCE---E--E-CHHHCCCCCHHHHHCCHHHHEEE
T ss_conf 8744268282122425095----60798799888---8--5-76578570554525798361132
No 100
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.60 E-value=0.0003 Score=49.66 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=73.3
Q ss_pred CCCEEEEECCEEEEE--CCCCCHHHHHHHC-CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 610499999999996--8887588999986-8954612127999645600047999717988702002656645663766
Q gi|254780859|r 2 QMMVKLKVDGIEIEV--PSGFTILQACELA-GAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPN 78 (700)
Q Consensus 2 ~~mv~~~Idg~~v~v--~~g~til~a~~~~-gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~ 78 (700)
|.-|+|+|||+.+++ ++.+++|++.+.. |..=+++- --.|.|--|.|-|+| +++.||-+|+..
T Consensus 1 k~~i~f~vNG~~~~~~~~~~~~Ll~~LR~~lgltgtK~G-----C~~G~CGACTVlvdG---~~v~SCl~~a~~------ 66 (151)
T TIGR03198 1 KEQFRFTVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVS-----CGIGRCGACSVLIDG---KLANACLTMAYQ------ 66 (151)
T ss_pred CCEEEEEECCEEEEEECCCCCCHHHHHHHCCCCCCCCCC-----CCCCCCCCCEEEECC---CEEEEHHHHHHH------
T ss_conf 967999988999897379998899999730799667865-----188799961899899---398730633987------
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6853798199899999999999998278998877888788
Q gi|254780859|r 79 GELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGE 118 (700)
Q Consensus 79 ~~g~~v~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~Ge 118 (700)
.+|.+|.|---.......-+-+-.+.+|-..|-.|.-|=-
T Consensus 67 ~~G~~I~TvEGl~~~~l~~vq~af~~~~a~QCGyCtPG~v 106 (151)
T TIGR03198 67 ADGHEITTIEGIAENELDPCQTAFLEEGGFQCGYCTPGMV 106 (151)
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 3897899604456422429999999839983898738999
No 101
>PRK09898 hypothetical protein; Provisional
Probab=97.58 E-value=1.9e-05 Score=58.37 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=50.2
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECC------------CCCCEEEECCC---CCCCCCCCCC--EEECCCCCC
Q ss_conf 210064329010023645432068740033306------------66412662058---7555654662--220121210
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGR------------GENAEITTYLE---QSLTSEMQGN--IIDLCPVGA 212 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R------------G~~~~i~~~~~---~~~~~e~~Gn--cvd~CPvGA 212 (700)
....|.+|||-|++||.+|.+......-....| +....-+.+.+ .|..|-.|.+ |+.+|||||
T Consensus 60 ~mviD~~kCiGC~aC~~AC~~~N~~~~~~~~sri~v~~~~~~~~~~~~~~~~~~~~~~~~p~~C~hC~~p~C~~~CP~~A 139 (208)
T PRK09898 60 VLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGA 139 (208)
T ss_pred EEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
T ss_conf 88750003057627877534306888787633157862211367764457664687616463266998926888578576
Q ss_pred CCCCCCCCCCCCCCE-EEEEECCCCCCCCCEEEE
Q ss_conf 122332333444302-352201211688643667
Q gi|254780859|r 213 LTSKPFAFTGRSWEL-TKTDSIDVMDALGSAIRI 245 (700)
Q Consensus 213 Lt~k~~~~~~Rpwel-~~~~SvC~~C~~GC~i~v 245 (700)
++-++-- + -+.+ +..=.-|.+|-..|...+
T Consensus 140 i~~~~~~--G-~v~~d~~~CigC~~C~~aCP~~~ 170 (208)
T PRK09898 140 ITWQQKE--G-CITVDHKRCIGCSACTTACPWMM 170 (208)
T ss_pred EEEECCC--C-EEEEEHHHCCCCCHHHHHCCCCC
T ss_conf 3870799--7-59987776804118997399998
No 102
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=97.57 E-value=1.8e-05 Score=58.45 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=40.6
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 06432901002364543206874003330666412662058755565466222012121012233
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKP 217 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~ 217 (700)
.|.++||.|+.|+++|-+ .+|.+...| .+.. ..-.|.-||.|+.+||++||+-.+
T Consensus 48 vD~eKCi~Cg~C~~~CP~----~AI~~~~dg---~~~I---D~d~C~GCG~C~~~CP~~AI~mv~ 102 (105)
T PRK09623 48 VDESKCVKCYICWKFCPE----PAIYIKEDG---YVAI---DYDYCKGCGICANECPTKAITMEK 102 (105)
T ss_pred CCHHHCCCCCCHHHHCCC----CCEEECCCC---CEEE---CHHHCCCHHHHHHHCCHHHHCCHH
T ss_conf 246258485134647099----808974998---4886---866892863887767997733301
No 103
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=97.55 E-value=3.3e-05 Score=56.63 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=47.3
Q ss_pred CHHHCCCCCHHHHHHHHCCCCCCEEEECC-CCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 64329010023645432068740033306-6641266205875556546622201212101223323
Q gi|254780859|r 154 VMNRCIHCTRCVRFITEVAGVSELGLVGR-GENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 154 d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R-G~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~ 219 (700)
..+.||.|+.|||+|- .++|.|+-+ |....-.......-+|..||.|.++||++||--+.|.
T Consensus 6 ~~D~CIgC~~CvrvCP----t~vieMVp~dg~~~~q~~~~~RtedCIGC~~CE~aCPtdaLsir~y~ 68 (80)
T TIGR03048 6 IYDTCIGCTQCVRACP----TDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYL 68 (80)
T ss_pred EECCCCCCHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEC
T ss_conf 4040668046686588----45145224666544645578861005562134430898731358841
No 104
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.52 E-value=0.00026 Score=50.09 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=72.7
Q ss_pred CCCEEEEECCEEEE--ECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61049999999999--6888758899998689546121279996456000479997179887020026566456637666
Q gi|254780859|r 2 QMMVKLKVDGIEIE--VPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNG 79 (700)
Q Consensus 2 ~~mv~~~Idg~~v~--v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~ 79 (700)
.|-|+|+|||++++ +++++++|++.+..|..=+++ . --.|.|--|.|-|+| +++.||.+|+.. -
T Consensus 6 ~~~i~~tvNG~~~~~~~~p~~~Ll~~LR~~gltg~K~----G-C~~G~CGaCTVlvdG---~~v~SCl~~a~~------~ 71 (159)
T PRK09908 6 TITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQ----G-CCVGECGACTVLVDG---TAIDSCLYLAAW------A 71 (159)
T ss_pred EEEEEEEECCEEEEEECCCCCCHHHHHHHCCCCCCCC----C-CCCCCCCCCEEEECC---CEEEHHHHHHHH------C
T ss_conf 7789999999998985799999999998587977876----4-278589886899899---297354875987------3
Q ss_pred CCCEEEEC-----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85379819-----98999999999999982789988778887888
Q gi|254780859|r 80 ELPEVFTK-----SSMVKKARAGVMEFLLINHPLDCPICDQGGEC 119 (700)
Q Consensus 80 ~g~~v~t~-----s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC 119 (700)
+|-+|.|- .++... +-+-.+-.|-..|-.|.-|=-.
T Consensus 72 ~G~~I~TiEGl~~~~~l~~----vQ~Af~~~~a~QCGyCtPG~im 112 (159)
T PRK09908 72 EGKEIRTLEGEAKGGKLSH----VQQAYAKSGAVQCGFCTPGLIM 112 (159)
T ss_pred CCCEEEEECCCCCCCCHHH----HHHHHHHCCCCCCCCCHHHHHH
T ss_conf 9978998625766564359----9999998699808897389999
No 105
>PRK09898 hypothetical protein; Provisional
Probab=97.50 E-value=3.8e-05 Score=56.18 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=41.7
Q ss_pred CHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 02100643290100236454320687400333066641266205875556546622201212101223
Q gi|254780859|r 149 PLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 149 p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k 216 (700)
-.+..|.++||.|+.|+.+|-= |. .. +.+..+.+..|.+||.||+.||+|||.-=
T Consensus 147 G~v~~d~~~CigC~~C~~aCP~--~~--~~---------~~~~~~~~~KC~lC~~Cv~~CP~~Al~~~ 201 (208)
T PRK09898 147 GCITVDHKRCIGCSACTTACPW--MM--AT---------VNTESKKSSKCVLCGECANACPTGALKII 201 (208)
T ss_pred CEEEEEHHHCCCCCHHHHHCCC--CC--CE---------ECCCCCCCCCCCCHHHHHHHCCHHCEEEE
T ss_conf 7599877768041189973999--98--57---------67888966848686699986712016982
No 106
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.49 E-value=0.00025 Score=50.33 Aligned_cols=48 Identities=29% Similarity=0.424 Sum_probs=39.0
Q ss_pred CCEEEE-ECC--EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 104999-999--999968887588999986895461212799964560004799971
Q gi|254780859|r 3 MMVKLK-VDG--IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIK 56 (700)
Q Consensus 3 ~mv~~~-Idg--~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve 56 (700)
-=|+|. .|| .++++++|+|||+||.++||.||+=|- .|+|..|.+.+.
T Consensus 3 ~~v~~~~~dg~~~~~~~~~~etiL~aal~~Gi~lp~~C~------~G~Cg~Ck~~~~ 53 (340)
T PRK11872 3 HKVALSFADGKTLFIPVNHDELLLDAALRQGINLPLDCR------EGVCGTCQGRCE 53 (340)
T ss_pred EEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCCCCCC------CCCCCCCEEEEE
T ss_conf 179999679987999838999399999976998637899------967613878999
No 107
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.49 E-value=0.00021 Score=50.84 Aligned_cols=64 Identities=27% Similarity=0.446 Sum_probs=54.9
Q ss_pred EEEEECC---EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-------------------CCC
Q ss_conf 4999999---999968887588999986895461212799964560004799971798-------------------870
Q gi|254780859|r 5 VKLKVDG---IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIA-------------------SKP 62 (700)
Q Consensus 5 v~~~Idg---~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~-------------------~k~ 62 (700)
|||+||+ +..+|+.|.|+|+.....||.||-=| +--|+|..|=|.|.... -||
T Consensus 32 ~ti~iNd~~E~~~~v~~G~~LL~~L~~~gif~sSaC-----GGgg~C~QCrv~V~~ggge~LpTe~~~~sk~~~keGwRL 106 (425)
T TIGR01941 32 VTIKINDDEEKSITVPAGGKLLNTLASNGIFISSAC-----GGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL 106 (425)
T ss_pred EEEEECCCCCCEEECCCCHHHHHHHHHCCEEECCCC-----CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCEE
T ss_conf 589861874435771221479999875782312788-----878846631589963788768775421331445217702
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 2002656645663
Q gi|254780859|r 63 QASCAMNVSDLRA 75 (700)
Q Consensus 63 ~~sC~t~v~~gm~ 75 (700)
||-++|+..|-
T Consensus 107 --sCQ~~Vk~Dm~ 117 (425)
T TIGR01941 107 --SCQVKVKQDMS 117 (425)
T ss_pred --ECCCCCCCCCE
T ss_conf --11322344877
No 108
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.47 E-value=3.7e-05 Score=56.28 Aligned_cols=63 Identities=16% Similarity=0.344 Sum_probs=46.7
Q ss_pred CCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCC------CEEECCCCCCCCC
Q ss_conf 56021006432901002364543206874003330666412662058755565466------2220121210122
Q gi|254780859|r 147 IGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQG------NIIDLCPVGALTS 215 (700)
Q Consensus 147 ~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~G------ncvd~CPvGALt~ 215 (700)
.+.+|+.+-+|||-|.-|+-+|. .+++.++.+.... +..-.....|.+|. .||++|||+||+-
T Consensus 76 ~~~~v~~~~~~cigc~~c~~acp----~ga~~~v~~~~~~--~~~~~~a~kcdlc~~~~~gpacv~~cpt~al~l 144 (654)
T PRK12769 76 VNDSIQVNQQKCIGCKSCVVACP----FGTMQIVLTPVAP--GKVKATAHKCDLCAGRENGPACVENCPADALQL 144 (654)
T ss_pred CCCEEEEECCCCCCCCCHHHCCC----CCCEEEEECCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
T ss_conf 29879983121668621665089----8854999636777--765544455753358777850776576435433
No 109
>TIGR02912 sulfite_red_C sulfite reductase, subunit C; InterPro: IPR014261 This entry represents subunit C, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=97.47 E-value=6e-05 Score=54.76 Aligned_cols=88 Identities=25% Similarity=0.380 Sum_probs=55.8
Q ss_pred CCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-----CCCCC
Q ss_conf 0064329010023645432068740033306664126620587555654662220121210122332333-----44430
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFT-----GRSWE 226 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~-----~Rpwe 226 (700)
.++.+|||-|+=||..|..-+ +++|.+.+-= +.- +.-.|-=||.||.-|||+|.+-++-.|. +|.-
T Consensus 171 ~y~~~rC~gC~ACV~~C~~~~-~GaL~~~N~K----vvr---~~~~CIGCGECv~~CPT~AW~R~~~~y~~l~l~GRTg- 241 (323)
T TIGR02912 171 RYDADRCIGCGACVKVCKKKA-VGALSLENYK----VVR---DESKCIGCGECVLKCPTGAWTRSEEKYYKLRLLGRTG- 241 (323)
T ss_pred CCCCCCCCCCHHHHHHCCCCC-CEEEEEECCE----EEE---CCCCEECCCCHHHCCCCCCCCCCCCCEEEEEEEECCC-
T ss_conf 426553313246784034322-1022310422----565---2775003530132088644445714248999862257-
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 23522012116886436675159999885
Q gi|254780859|r 227 LTKTDSIDVMDALGSAIRIDARGCEVMRI 255 (700)
Q Consensus 227 l~~~~SvC~~C~~GC~i~v~v~~g~i~rv 255 (700)
|+.| -+|-...-||..+.|++|
T Consensus 242 -KK~P------R~~~~Fi~Wv~ED~I~~i 263 (323)
T TIGR02912 242 -KKNP------RLGKDFIKWVDEDSIVKI 263 (323)
T ss_pred -CCCC------CHHHHHHHHCCCCEEEEE
T ss_conf -8886------126777513043416766
No 110
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=97.45 E-value=6.2e-05 Score=54.64 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=42.5
Q ss_pred CCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 0064329010023645432068740033306664126620587555654662220121210122332
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~ 218 (700)
..|.++||.|++|.++|+-=|. -+. +| +.+.-.+.-|+-||.|.=+||.+|++.++.
T Consensus 65 ~i~~e~C~~CG~C~~vC~f~Ai----~~~-~~-----~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 65 EIDPEKCIRCGKCAEVCRFGAI----VVL-PG-----GKPVLNPDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred CCCHHHCCCCCCHHHHCCCCEE----EEC-CC-----CCEECCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 0375774301726876788808----973-78-----860028020267663332478765554320
No 111
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.44 E-value=4.7e-05 Score=55.49 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=22.7
Q ss_pred HCCEEECCCC------CCCCC-CEEEEE------CCEEEEECCCCCCCCCCCH-HHHHHHHHH
Q ss_conf 4557704786------20247-208820------8867420443288555740-799999999
Q gi|254780859|r 555 SADVILPGAA------YTEKS-GLWVNT------EGRVQMGMRAIFPPGDAKE-DWEIICALA 603 (700)
Q Consensus 555 ~ADVVLP~a~------~~Ek~-Gtf~N~------EgRvQ~~~~av~p~geak~-dw~Il~~La 603 (700)
-||.|+.+-. ++++. |.-++. +...+...+-|..-|++.. ...|..+++
T Consensus 364 ~aD~VI~AiGq~~d~~~l~~~~~~~~~~g~i~~~~~~~~Ts~~gVFa~GD~v~Gp~~vv~AI~ 426 (560)
T PRK12771 364 EADMVVLAIGQDTDSEFLEGLPGVRNGRGGLVVDRNFRMTGRPGVFAGGDMVPGERTVTTAVG 426 (560)
T ss_pred ECCEEEECCCCCCCCCHHCCCCCEEECCCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 468999922578873000236554717998884787665799886743654668418999999
No 112
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.44 E-value=4.7e-05 Score=55.54 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=47.5
Q ss_pred CHHHCCCCCHHHHHHHHCCCCCCEEEECC-CCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 64329010023645432068740033306-6641266205875556546622201212101223323
Q gi|254780859|r 154 VMNRCIHCTRCVRFITEVAGVSELGLVGR-GENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 154 d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R-G~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~ 219 (700)
..++||.|+.|||+|- .++|.|+.+ |............-+|.=|+.|..+||++||--+.|.
T Consensus 7 ~~D~CIgC~qCV~~CP----t~VleMvp~~g~k~~q~~~~pR~edCIGCk~Ce~aCPtd~lsir~y~ 69 (81)
T PRK02651 7 IYDTCIGCTQCVRACP----LDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYL 69 (81)
T ss_pred ECCCCCCHHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCEEEEEEC
T ss_conf 5031367456686588----76036424677613502258845433351446630899850478851
No 113
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=97.38 E-value=5.4e-05 Score=55.07 Aligned_cols=104 Identities=18% Similarity=0.349 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECC
Q ss_conf 88878883799899838986747775677878885602100643290100236454320687400333066641266205
Q gi|254780859|r 113 CDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYL 192 (700)
Q Consensus 113 Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~ 192 (700)
|--||+=-....+--.|+....-.... +..+.-.-+-..|-+.||-||.|+.+|. +++|-...|+.|+.+.-
T Consensus 74 C~PGG~~vi~kI~elLgvep~~~~~~~--~~~~~~~~va~i~e~~ciGCtkCiqaCp----vdAivg~~~~mhtv~~d-- 145 (198)
T COG2878 74 CAPGGEAVIRKIAELLGVEPPPADGSE--HGEEQARMVALIDEANCIGCTKCIQACP----VDAIVGATKAMHTVIAD-- 145 (198)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHH--HHCCCCCEEEEECCHHCCCCHHHHHHCC----HHHHHCCCHHHHHHHHH--
T ss_conf 899968999999999668888863165--5314544046751220144398998497----14431253257898998--
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 875556546622201212101223323334443023
Q gi|254780859|r 193 EQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELT 228 (700)
Q Consensus 193 ~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~ 228 (700)
-|.-|++||.-|||+.+.-+|...+.+.|...
T Consensus 146 ----lCTGC~lCva~CPtdci~m~~~~~~~~~~kw~ 177 (198)
T COG2878 146 ----LCTGCDLCVAPCPTDCIEMQPVAETPDRWKWD 177 (198)
T ss_pred ----HHCCCCCCCCCCCCCCEEEEECCCCHHHCCCC
T ss_conf ----84677766587987702452155413313444
No 114
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family; InterPro: IPR011886 Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.; GO: 0005506 iron ion binding, 0006118 electron transport.
Probab=97.37 E-value=7.9e-05 Score=53.87 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=42.6
Q ss_pred CHHHCCCCCHHHHHHHHCCCCCCEEEECCC------CCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 643290100236454320687400333066------6412662058755565466222012121012
Q gi|254780859|r 154 VMNRCIHCTRCVRFITEVAGVSELGLVGRG------ENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 154 d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG------~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
|.++|=+|+-|.+.|-| -++|.+..+| ..+.| .+=||..||=|||+||.-||.
T Consensus 202 ~~~~C~~Cm~C~~vCpE---p~VL~~~~k~~~~~~~~s~~V-----~SgdC~~CGRCIDVC~~~vl~ 260 (263)
T TIGR02163 202 DREKCTNCMDCFNVCPE---PQVLRMPLKKEEDAKGGSTLV-----LSGDCINCGRCIDVCAEDVLG 260 (263)
T ss_pred CHHCCCCCCCCCCCCCC---HHHCCCCCCCCCCCCCCCCEE-----ECCCCCCCCCEEEECCCCCCC
T ss_conf 23226877577601585---201250006755556798236-----662415667612442766231
No 115
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=97.35 E-value=1.8e-05 Score=58.60 Aligned_cols=83 Identities=20% Similarity=0.363 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf 74777567787888560210064329010023645432068740033306664126620587555654662220121210
Q gi|254780859|r 133 SRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 133 ~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGA 212 (700)
-.|+++|.......-| -|.++.++||.|.-|||.|-=-.-.-++.+...=-.-+...|.=+---|-||||||.-|||.-
T Consensus 41 ~~yPyek~i~serfrG-rihfefdkCiaCevCvrvCPi~lP~vdW~~~k~~k~k~l~~ysidfGvCifCGnCveyCPtnC 119 (187)
T TIGR00403 41 IQYPYEKLIPSERFRG-RIHFEFDKCIACEVCVRVCPINLPVVDWEFEKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNC 119 (187)
T ss_pred EECCCHHCCCCCCCCC-EEEEEECCEEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC
T ss_conf 7567001344310011-056531333442345676214363120455546777677530000004676447210057530
Q ss_pred CCCC
Q ss_conf 1223
Q gi|254780859|r 213 LTSK 216 (700)
Q Consensus 213 Lt~k 216 (700)
|.-.
T Consensus 120 lsmt 123 (187)
T TIGR00403 120 LSMT 123 (187)
T ss_pred CCCC
T ss_conf 0000
No 116
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=97.22 E-value=0.00068 Score=47.13 Aligned_cols=66 Identities=29% Similarity=0.466 Sum_probs=52.2
Q ss_pred EEEEECC---EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC-----------------C
Q ss_conf 4999999---9999688875889999868954612127999645600047999717988702-----------------0
Q gi|254780859|r 5 VKLKVDG---IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ-----------------A 64 (700)
Q Consensus 5 v~~~Idg---~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~-----------------~ 64 (700)
++|.||| ++.+|+.|.++|.+....||.||--| +--|+|..|-|.|....+-+. -
T Consensus 37 ~ti~IN~d~e~~~t~~aG~kLL~~L~~~gifi~SaC-----GGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RL 111 (410)
T COG2871 37 ITIKINGDPEKTKTVPAGGKLLGALASSGIFISSAC-----GGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRL 111 (410)
T ss_pred EEEEECCCHHHCEECCCCHHHHHHHHHCCCCCCCCC-----CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEE
T ss_conf 489936983243642772468999874691523577-----898631342899953898647412544326666305167
Q ss_pred CCCCCCCCCCC
Q ss_conf 02656645663
Q gi|254780859|r 65 SCAMNVSDLRA 75 (700)
Q Consensus 65 sC~t~v~~gm~ 75 (700)
||.++|+..|-
T Consensus 112 sCQ~~Vk~dm~ 122 (410)
T COG2871 112 SCQVNVKHDMD 122 (410)
T ss_pred EEEECCCCCCE
T ss_conf 77611355622
No 117
>PRK10330 electron transport protein HydN; Provisional
Probab=97.19 E-value=0.00028 Score=49.96 Aligned_cols=94 Identities=12% Similarity=0.163 Sum_probs=53.1
Q ss_pred CCHHCCCHHHCCCCCHHHHHHHHCCCCC-CEE-EECCCCCCEEEEC----CCCCCCCCCC--CCEEECCCCCCCCCCCCC
Q ss_conf 6021006432901002364543206874-003-3306664126620----5875556546--622201212101223323
Q gi|254780859|r 148 GPLVKTVMNRCIHCTRCVRFITEVAGVS-ELG-LVGRGENAEITTY----LEQSLTSEMQ--GNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 148 ~p~i~~d~~rCI~C~RCVR~c~Ev~g~~-~lg-~~~RG~~~~i~~~----~~~~~~~e~~--Gncvd~CPvGALt~k~~~ 219 (700)
+.++..|.+|||-|..|.-+|.+.-... .+. ...+.+..++... ...+..|-.| .-|+.+|||||++ |.
T Consensus 2 ~k~~viD~~rCiGC~aC~vAC~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~HC~~p~C~~vCP~gAi~-k~-- 78 (181)
T PRK10330 2 NRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIHVIKGVNVSTATVCRQCEDAPCANVCPNGAIS-RD-- 78 (181)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCEE-EC--
T ss_conf 848999789370611899998798647777654355310204887357765058748798997337768777699-74--
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 33444302352201211688643667
Q gi|254780859|r 220 FTGRSWELTKTDSIDVMDALGSAIRI 245 (700)
Q Consensus 220 ~~~Rpwel~~~~SvC~~C~~GC~i~v 245 (700)
.+-.--.+..=.-|.+|...|...+
T Consensus 79 -~G~V~vd~~~CiGC~~C~~ACPyga 103 (181)
T PRK10330 79 -KGFVHVMQERCIGCKTCVVACPYGA 103 (181)
T ss_pred -CCEEEECCCCCCCCCCHHHCCCCCC
T ss_conf -9959985472927293013399998
No 118
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=97.07 E-value=0.0011 Score=45.69 Aligned_cols=95 Identities=20% Similarity=0.383 Sum_probs=65.0
Q ss_pred EEEECCEEEEECCCCCHHHHHHH-CCCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99999999996888758899998-6895-461212799964560004799971798870200265664566376668537
Q gi|254780859|r 6 KLKVDGIEIEVPSGFTILQACEL-AGAE-IPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPE 83 (700)
Q Consensus 6 ~~~Idg~~v~v~~g~til~a~~~-~gi~-IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~ 83 (700)
+|++||+++++.++.++++..+. +|+. +=.=| -.|.|--|.|=|+| |++-||-+|+.- -+|.+
T Consensus 2 ~~~vnG~~~~~~~~~~L~~~LR~~l~~~~~K~gC------~~G~CGaCtv~~dg---~~~~sC~~~~~~------~~g~~ 66 (848)
T TIGR03311 2 EFIVNGREVDVNEEKKLLEFLREDLRLTGVKNGC------GEGACGACTVIVNG---KAVRACRFTTAK------LAGKE 66 (848)
T ss_pred EEEECCEEECCCCCCHHHHHHHHHCCCCCCCCCC------CCCCCCCCEEEECC---EEEEHHHHHHHH------CCCCE
T ss_conf 8999998951699871999998876995101573------89998867899899---185442514988------28988
Q ss_pred EEECCHHHHHHHHHHHHH-HHHCCCCCCCCCCCC
Q ss_conf 981998999999999999-982789988778887
Q gi|254780859|r 84 VFTKSSMVKKARAGVMEF-LLINHPLDCPICDQG 116 (700)
Q Consensus 84 v~t~s~~v~~~r~~vle~-ll~nHpldCp~Cd~~ 116 (700)
|.|---.. ...+..++. .+..+-+.|-.|--|
T Consensus 67 v~T~egl~-~~~~~~~~~af~~~~~~QCGfCtpG 99 (848)
T TIGR03311 67 ITTVEGLT-EREKDVYAWAFAKAGAVQCGFCIPG 99 (848)
T ss_pred EEECCCCC-CCCCCHHHHHHHHCCCCCCCCCHHH
T ss_conf 99537778-5554789999997299826787789
No 119
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=97.06 E-value=0.00024 Score=50.47 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=53.5
Q ss_pred CHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCC-----------CCCCCCCC--CCEEECCCCCCCCC
Q ss_conf 021006432901002364543206874003330666412662058-----------75556546--62220121210122
Q gi|254780859|r 149 PLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLE-----------QSLTSEMQ--GNIIDLCPVGALTS 215 (700)
Q Consensus 149 p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~-----------~~~~~e~~--Gncvd~CPvGALt~ 215 (700)
..+..|.+|||-|..|+-+|.+.-....+|.. -+.+.|-.+.+ .+..|-.| -.|+++|||||+.-
T Consensus 11 ~~~~~D~~rCiGC~aC~~AC~~~n~~~~~g~~--~~r~~v~~~~~~~~~~~~~~~~~~~~C~HC~~ppCv~vCPtgA~~k 88 (203)
T COG0437 11 YAFVIDSSRCIGCKACVVACKEENDRLPVGNS--VFRRYVNYVEGDWGSGTVEYYYLSISCMHCEDPPCVKVCPTGALFK 88 (203)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCCCCCC--EEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 68998326043968999999975358887862--0467999526766777535787131246999996335478875388
Q ss_pred CCCCCCCCCCCE-EEEEECCCCCCCCCEEEEE
Q ss_conf 332333444302-3522012116886436675
Q gi|254780859|r 216 KPFAFTGRSWEL-TKTDSIDVMDALGSAIRID 246 (700)
Q Consensus 216 k~~~~~~Rpwel-~~~~SvC~~C~~GC~i~v~ 246 (700)
+.- -+= -.. +..=--|.+|-..|...+-
T Consensus 89 ~~~--dGi-V~vd~d~CIGC~yCi~ACPyga~ 117 (203)
T COG0437 89 REE--DGI-VLVDKDLCIGCGYCIAACPYGAP 117 (203)
T ss_pred ECC--CCE-EEECCCCCCCCHHHHHHCCCCCC
T ss_conf 358--977-99658722473477864998885
No 120
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.03 E-value=0.00019 Score=51.21 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=41.8
Q ss_pred CCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC---CCCCCCCEEECCCCCCCCCCC
Q ss_conf 6021006432901002364543206874003330666412662058755---565466222012121012233
Q gi|254780859|r 148 GPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSL---TSEMQGNIIDLCPVGALTSKP 217 (700)
Q Consensus 148 ~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~---~~e~~Gncvd~CPvGALt~k~ 217 (700)
+-.|..|.+|||-|+.|+-+|. .+++.++.. ....-.| .+++|+.|||+|||+||+--.
T Consensus 77 ~~~~~~~~~~cigc~~c~~~cp----~~a~~~~~~-------~~~k~~~~~~r~~~~~~cv~~c~t~al~~~~ 138 (639)
T PRK12809 77 SDSVQLDEQKCIGCKRCAIACP----FGVVEMVDT-------IAQKCDLCNQRSSGTQACIEVCPTQALRLMD 138 (639)
T ss_pred CCEEEEECCCCCCCCCHHHHCC----CCCEEEEEC-------CCCCCCCCCCCCCCHHHHHHHCCHHHHHHCC
T ss_conf 8749985032668632454189----885388863-------5646765678866336898658665531103
No 121
>PRK08764 ferredoxin; Provisional
Probab=97.03 E-value=0.00049 Score=48.16 Aligned_cols=94 Identities=19% Similarity=0.369 Sum_probs=64.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEE
Q ss_conf 77888788837998998389867477756778788856021006432901002364543206874003330666412662
Q gi|254780859|r 111 PICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITT 190 (700)
Q Consensus 111 p~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~ 190 (700)
--|--||+=-.+..+-..|.....|...... .... -.-..+...||-|+.|+++|. .++|-....|.|+.+.-
T Consensus 44 ~~C~pGG~~~a~~ia~ilg~~~~~~~~~~~~-~~~~--~~a~i~~~~CiGcg~Ci~aCp----fDAI~~~~~~~~~V~~~ 116 (138)
T PRK08764 44 DHCPPGGDAGARALAQVLGVPARPYDRSRGT-HKLP--QVAWIVEADCIGCTKCIQACP----VDAIVGGAKHMHTVIAP 116 (138)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCCC--CEEEEECCCCCCCCHHHHHCC----CCCEECCCCCCEEECHH
T ss_conf 8299996999999999978895432211366-5665--367862688877397874199----55175588888265865
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 058755565466222012121012233
Q gi|254780859|r 191 YLEQSLTSEMQGNIIDLCPVGALTSKP 217 (700)
Q Consensus 191 ~~~~~~~~e~~Gncvd~CPvGALt~k~ 217 (700)
.|.-||.||.+||++.++-.|
T Consensus 117 ------~CtGCg~Cv~~CP~~~I~l~P 137 (138)
T PRK08764 117 ------LCTGCELCVPACPVDCIELHP 137 (138)
T ss_pred ------HCCCCCHHHHHCCCCHHEECC
T ss_conf ------687835655646713310612
No 122
>PRK11433 putative xanthine dehydrogenase iron-sulfur-binding subunit; Provisional
Probab=96.95 E-value=0.0062 Score=40.21 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=91.8
Q ss_pred CCEEEEECCEEEE--ECCCCCHHHHHHH-CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1049999999999--6888758899998-689546121279996456000479997179887020026566456637666
Q gi|254780859|r 3 MMVKLKVDGIEIE--VPSGFTILQACEL-AGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNG 79 (700)
Q Consensus 3 ~mv~~~Idg~~v~--v~~g~til~a~~~-~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~ 79 (700)
+-|+|+|||++++ +++.+|+|++.+. +|..=.++ .- -.|.|--|.|-|+| +++-||.+++.. -
T Consensus 50 ~~v~l~VNG~~~~~~vdp~ttLLd~LRe~LgLTGtK~----GC-~~G~CGACTVlvDG---~~v~SCl~la~~------~ 115 (217)
T PRK11433 50 SPVTFKVNGKTEQLELDTRTTLLDALREHLHLTGTKK----GC-DHGQCGACTVLVNG---RRLNACLTLAVM------H 115 (217)
T ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCC----CC-CCCCCCCCEEEECC---CEEECCCCHHHH------C
T ss_conf 3079999999978743898889999998639975688----88-99778898899998---283364074876------2
Q ss_pred CCCEEEEC-----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCCC--CCCCCCCC-CCCCCCH
Q ss_conf 85379819-----98999999999999982789988778887888379989983898-6747--77567787-8885602
Q gi|254780859|r 80 ELPEVFTK-----SSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFG-SSRY--SEEKRAVE-DKSIGPL 150 (700)
Q Consensus 80 ~g~~v~t~-----s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~-~~r~--~~~k~~~~-~~~~~p~ 150 (700)
+|.+|.|- .++....|+ -++-.|-..|-.|--|=-+-.-.+-.+.... .|.- ....+..+ ++++-..
T Consensus 116 ~G~~ItTIEGL~~~~~lhpvQ~----AF~~~~a~QCGyCTPG~imsa~alL~~~~~~~ps~~~~d~~~~p~pt~~eIrea 191 (217)
T PRK11433 116 QGAEITTIEGLGTPDNLHPMQA----AFVKHDGFQCGYCTPGQICSSVAVLDEIKDGIPSHVTVDLTAAPELTADEIRER 191 (217)
T ss_pred CCCEEEEEECCCCCCCCCHHHH----HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 8977998523477764159999----999839997988848999999999985312575422222346999899999998
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCC
Q ss_conf 1006432901002364543206874
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVS 175 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~ 175 (700)
+.-+.=||--=.+=|++-.+++|..
T Consensus 192 LsGNLCRCtgY~~Iv~Ai~~aAg~~ 216 (217)
T PRK11433 192 MSGNICRCGAYSNILEAIEDVAGEI 216 (217)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 6697211799889999999985775
No 123
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=96.92 E-value=0.00037 Score=49.05 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=8.5
Q ss_pred EECCHHHHHHHHHHHHCC
Q ss_conf 232414566888752013
Q gi|254780859|r 296 KPVSWDYALKAIKSAVLS 313 (700)
Q Consensus 296 ~~iSWdeAl~~ia~~L~~ 313 (700)
..-+|.+|+....+.+..
T Consensus 16 ~d~~~~~~l~~~~~~~~~ 33 (459)
T COG1139 16 EDKQLREALRKAQDTLRA 33 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 407999999999988899
No 124
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=96.88 E-value=0.0026 Score=42.95 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=43.7
Q ss_pred EEEEECCEEEEECCCC-CHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEE--ECCC--------CCCCCCCCCCCCCC
Q ss_conf 4999999999968887-5889999868954612127999645600047999--7179--------88702002656645
Q gi|254780859|r 5 VKLKVDGIEIEVPSGF-TILQACELAGAEIPRFCFHERLSIAGNCRMCLVE--IKGI--------ASKPQASCAMNVSD 72 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~-til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVe--ve~~--------~~k~~~sC~t~v~~ 72 (700)
|+|+-.|+++++.++. +||+|++++||.+|+=|-. +.=|+|+.=||+ |+-. .+...+-|+.|.+|
T Consensus 4 Vt~~~SG~~~~~~~~~~sLL~al~~~gv~~~~sCr~---G~CGtCk~~l~~GeV~~~~~~~~~~~~g~iL~C~~~p~sD 79 (84)
T PRK10713 4 VTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCRE---GYCGSCRTRLVAGQVDWIQEPLAFIQPGEILPCCCRAKGD 79 (84)
T ss_pred EEEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCCC---CCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEECCEECCC
T ss_conf 999369719995799676999999869998568889---7688887798977774178876546899399861887877
No 125
>PRK07118 ferredoxin; Validated
Probab=96.85 E-value=0.00082 Score=46.55 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=60.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCC----------CCCCCC-CCCCC------CHHCCCHH-----HCCCCCHHHHHH
Q ss_conf 778887888379989983898674777----------567787-88856------02100643-----290100236454
Q gi|254780859|r 111 PICDQGGECDLQDQAIFFGFGSSRYSE----------EKRAVE-DKSIG------PLVKTVMN-----RCIHCTRCVRFI 168 (700)
Q Consensus 111 p~Cd~~GeC~LQd~~~~~g~~~~r~~~----------~k~~~~-~~~~~------p~i~~d~~-----rCI~C~RCVR~c 168 (700)
--|--||+=-.+..+...|++...-.. ..+..+ ..|.| ..+..+-. -||-|+.||+.|
T Consensus 72 ~~C~~GG~~~a~~ia~ilG~~~~~~~~~va~v~C~g~~~~~~~~~~y~g~~~C~aa~~~~~g~k~C~~gCiGcg~Cv~~C 151 (276)
T PRK07118 72 NLCPVGGAAVAEKVAEILGVEAAESEPKVAVVRCQGTCGKAKRKYEYVGIKDCAAAALLFGGPKGCSYGCLGLGSCVAAC 151 (276)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHC
T ss_conf 75999969999999999788866556623577426860126540114786047988631388765655589688004228
Q ss_pred HHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 32068740033306664126620587555654662220121210122332333
Q gi|254780859|r 169 TEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFT 221 (700)
Q Consensus 169 ~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~ 221 (700)
. .++|.+. .|.. .|. +-.|..||.|+++||+++++-.|...+
T Consensus 152 P----~dAI~~~-~g~~-~Vd-----~~~C~~Cg~C~~~CP~~~I~~~p~~~~ 193 (276)
T PRK07118 152 P----FDAIHIE-NGLP-VVD-----EEKCTGCGACVKACPKNVIELIPKSAR 193 (276)
T ss_pred C----CCCEEEE-CCCE-EEE-----HHHCCCCCHHHHHCCHHHHHCCCCCCC
T ss_conf 9----8846831-8978-971-----656888460444647557631766662
No 126
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.72 E-value=0.00046 Score=48.40 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=45.9
Q ss_pred CCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEE-EECCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 60210064329010023645432068740033306664126-620587555654662220121210122332
Q gi|254780859|r 148 GPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEI-TTYLEQSLTSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 148 ~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i-~~~~~~~~~~e~~Gncvd~CPvGALt~k~~ 218 (700)
+.-|..|.+||+.|+-||++|-. .+|++........- ...+-.+-.|.-||.|...||..|++--+-
T Consensus 8 n~pV~Vde~~C~gC~~Cv~~CP~----~~l~m~~d~~~~~G~~~~vv~pe~CIgCG~Ce~~CPd~AI~Va~r 75 (103)
T PRK09626 8 NTPVWVDESRCKACDICVSYCPA----GVLAMRIEPHAVLGKMIEVVYPESCIGCRECELHCPDFAIYVADR 75 (103)
T ss_pred CCCEEECCCCCCCCCHHHHHCCH----HHHHHCCCCCCCCCCCCCCCCHHHCCCCCHHHHHCCHHHEEEECC
T ss_conf 98488640107771288887776----564324564434565422168335838275755488232897404
No 127
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=96.72 E-value=0.0034 Score=42.10 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=55.9
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC---------------CCCCC
Q ss_conf 049999999999688875889999868954612127999645600047999717988702---------------00265
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ---------------ASCAM 68 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~---------------~sC~t 68 (700)
.|++-=-||..+ ++|+|||+||+++|++|--.|= --|.|--|.|.|-....|++ -||.+
T Consensus 3 ~v~f~psgkr~~-~~g~~il~aar~~gv~i~s~cg-----gk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~ 76 (614)
T COG3894 3 LVTFMPSGKRGE-DEGTTILDAARRLGVYIRSVCG-----GKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQA 76 (614)
T ss_pred EEEEECCCCCCC-CCCCHHHHHHHHHCCEEEEECC-----CCCCCCCEEEEEEECCCEECCCHHHHHHHHHHCEEEEEEH
T ss_conf 268623787578-8996088999861846763047-----8753243399999087035454057889876332453311
Q ss_pred CCCCCCCCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 66456637666853798199899999999
Q gi|254780859|r 69 NVSDLRAGPNGELPEVFTKSSMVKKARAG 97 (700)
Q Consensus 69 ~v~~gm~~~~~~g~~v~t~s~~v~~~r~~ 97 (700)
.|.-.. .|..--+.+.++|+.
T Consensus 77 ~v~gd~--------~i~ip~es~l~~q~v 97 (614)
T COG3894 77 QVLGDL--------VIFIPPESRLERQKV 97 (614)
T ss_pred HHCCCE--------EEECCCHHHHHHHHH
T ss_conf 005736--------897684556779998
No 128
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=96.68 E-value=0.0039 Score=41.65 Aligned_cols=51 Identities=31% Similarity=0.485 Sum_probs=40.4
Q ss_pred CCCCEEEEECC--EE-EEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 96104999999--99-99688875889999868954612127999645600047999717
Q gi|254780859|r 1 MQMMVKLKVDG--IE-IEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKG 57 (700)
Q Consensus 1 ~~~mv~~~Idg--~~-v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~ 57 (700)
|-+|..+.+++ .. ..++.|.|||+|++++||+||+=|- .|+|-.|.|+|..
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~------~g~C~TC~v~v~~ 54 (102)
T COG0633 1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACR------GGACGTCRVKVLE 54 (102)
T ss_pred CCCEEEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCC------CCCCCCCEEEECC
T ss_conf 98468985268762699517997799999886996260689------9724876899844
No 129
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=96.65 E-value=0.00035 Score=49.20 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=42.0
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 210064329010023645432068740033306664126620587555654662220121210122332
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~ 218 (700)
-...+.++||.|++|++.|-.- +|.+..++.. .....-.+-.|..||.|+.+||++|+.-...
T Consensus 23 ~~~~~~~~Ci~Cg~C~~~CP~~----ai~~~~~~~~--~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 23 KLVIDAEKCIGCGLCVKVCPTG----AIELIEEGLL--LPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred CEEECCCCCCCCCCHHHHCCHH----HHHHCCCCCC--CCEEEECCCCCCCHHHHHHHCCCCHHHHHHH
T ss_conf 3453400198686345457688----8752213466--7515458020534578884499642246553
No 130
>TIGR00402 napF ferredoxin-type protein NapF; InterPro: IPR004496 Members of this family are the ferredoxin-type protein subunits of nitrate reductase. These NapF proteins are involved in electron transfer, and contain iron-sulphur centres similar to those of bacterial-type 4FE-4S ferredoxins.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0006118 electron transport.
Probab=96.65 E-value=0.0012 Score=45.34 Aligned_cols=93 Identities=18% Similarity=0.380 Sum_probs=63.4
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCEEEECCCCC--CEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 4329010023645432068740033306664--12662058755565466222012121012233233344430235220
Q gi|254780859|r 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGEN--AEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDS 232 (700)
Q Consensus 155 ~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~--~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~S 232 (700)
..+|--|+-|+-+|+. +++.||.. .+|-. +--+|.|||.|+|+||.-+|-.+ ..++|+|+-.=|
T Consensus 38 ~a~CtrCg~C~saCen-------nil~~g~~G~p~v~f---dn~eC~fCgkCa~aCp~~~f~Pr----~~~~w~l~~~is 103 (161)
T TIGR00402 38 VARCTRCGECLSACEN-------NILQKGDAGYPEVEF---DNAECDFCGKCAEACPESLFYPR----FTRDWDLKIDIS 103 (161)
T ss_pred EEEECCCCCHHHHCCC-------CEEEECCCCCEEEEE---ECCCCCCCCHHHHHCCCCCCCCC----CCCCCCCCEEEE
T ss_conf 6631884340301784-------506516788506887---56876722122642875557888----888621230020
Q ss_pred ---------CCCCCCCCCEEEEECCCCEEEEE-ECCCCC
Q ss_conf ---------12116886436675159999885-247888
Q gi|254780859|r 233 ---------IDVMDALGSAIRIDARGCEVMRI-LPRINE 261 (700)
Q Consensus 233 ---------vC~~C~~GC~i~v~v~~g~i~rv-~~~~~~ 261 (700)
.|+-|-..|.+.+-.-.-+|-.| .|..|+
T Consensus 104 ~acL~~Q~~~C~~CQ~~C~~~AI~~~~~~~GiyqPqln~ 142 (161)
T TIGR00402 104 SACLILQSVECRDCQDACELQAIISRLELDGIYQPQLNS 142 (161)
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEEEECEEECCCCCC
T ss_conf 267774078771111137750455300003012454343
No 131
>TIGR00273 TIGR00273 iron-sulfur cluster binding protein; InterPro: IPR004452 Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulphur clusters..
Probab=96.58 E-value=0.0007 Score=47.03 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=4.3
Q ss_pred CCCCCHHHHHH
Q ss_conf 90100236454
Q gi|254780859|r 158 CIHCTRCVRFI 168 (700)
Q Consensus 158 CI~C~RCVR~c 168 (700)
||.|++|.-.|
T Consensus 298 CiRCG~C~n~C 308 (450)
T TIGR00273 298 CIRCGACLNEC 308 (450)
T ss_pred HHHHHHHHCCC
T ss_conf 33012341148
No 132
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=96.57 E-value=0.00084 Score=46.49 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCE-EEECCC-----CCCCCCCCC--CEEECCCCCCCCCCCCCCC
Q ss_conf 21006432901002364543206874003330666412-662058-----755565466--2220121210122332333
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAE-ITTYLE-----QSLTSEMQG--NIIDLCPVGALTSKPFAFT 221 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~-i~~~~~-----~~~~~e~~G--ncvd~CPvGALt~k~~~~~ 221 (700)
-...|.+|||-|..||-+|.+....+.--.-.+-...+ .+.+.+ .+..|-.|. -|+.+||+||+.-++-
T Consensus 40 gmviD~~rCiGC~aC~~ACk~~N~~p~~~~~~~v~~~~~~g~~p~~~~~~~p~~C~HC~~p~C~~vCP~~A~~k~~~--- 116 (225)
T TIGR03149 40 GMVHDETACIGCTACMDACREVNKVPEGVSRLEIIRSEPYGEFPDVEYRFFRKSCQHCDNAPCVAVCPTGASFKDEE--- 116 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEECCC---
T ss_conf 99998873668389999998755899986517999825777789850568886788987945575588584177688---
Q ss_pred CCCCCEEEE-EE---CCCCCCCCCEEEE
Q ss_conf 444302352-20---1211688643667
Q gi|254780859|r 222 GRSWELTKT-DS---IDVMDALGSAIRI 245 (700)
Q Consensus 222 ~Rpwel~~~-~S---vC~~C~~GC~i~v 245 (700)
.-+..+ ++ -|.+|-..|...+
T Consensus 117 ---~GiV~vd~~~CiGC~~C~~aCPy~a 141 (225)
T TIGR03149 117 ---TGIVDVHKDLCVGCQYCIAACPYRV 141 (225)
T ss_pred ---CCEEEEEHHHCCCHHHHHHCCCCCC
T ss_conf ---8579975686940418986199998
No 133
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.37 E-value=0.0012 Score=45.45 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=24.8
Q ss_pred HHCCCCCCEEEECCCCCCEEEECCCC--------C----CCCCCCCCEEECCCCCC
Q ss_conf 32068740033306664126620587--------5----55654662220121210
Q gi|254780859|r 169 TEVAGVSELGLVGRGENAEITTYLEQ--------S----LTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 169 ~Ev~g~~~lg~~~RG~~~~i~~~~~~--------~----~~~e~~Gncvd~CPvGA 212 (700)
.||+-.+-+.++-+-+-.+|.-+.+. | -.|.-||.|..+||+-+
T Consensus 185 ~~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~ 240 (622)
T COG1148 185 VEVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEV 240 (622)
T ss_pred HHHCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33125886146542246530354353478873065200112655322223477656
No 134
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=96.34 E-value=0.00043 Score=48.57 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCC
Q ss_conf 10023645432068740033306664126620587555654662220121
Q gi|254780859|r 160 HCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCP 209 (700)
Q Consensus 160 ~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CP 209 (700)
-|.-||...|+|..-..|+-..- |+.-|+-+..||.+++|=|
T Consensus 54 p~~p~VkvGD~VlkGQ~I~~~~g--------~vsapVHAptSGtV~aIe~ 95 (725)
T PRK05035 54 EGELLVSVGDRVLKGQPLTQGDG--------RMSLPVHAPTSGTVTAIEP 95 (725)
T ss_pred CCCCCCCCCCEECCCCEEEECCC--------CEEEEEECCCCEEEEEEEE
T ss_conf 77141478999768887454698--------4586056799829987501
No 135
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=96.33 E-value=0.00072 Score=46.97 Aligned_cols=63 Identities=24% Similarity=0.449 Sum_probs=37.0
Q ss_pred HCCCHHHCCCCCHHHHHHH--HCC----CCCCEEEECCCCCCEEE--ECCCCCC-CCCCCCCEEECCCCCCCCC
Q ss_conf 1006432901002364543--206----87400333066641266--2058755-5654662220121210122
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFIT--EVA----GVSELGLVGRGENAEIT--TYLEQSL-TSEMQGNIIDLCPVGALTS 215 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~--Ev~----g~~~lg~~~RG~~~~i~--~~~~~~~-~~e~~Gncvd~CPvGALt~ 215 (700)
-....++||.||+|.-.|- .+. |....+ .||....+. ...++.+ .|-.||.|...||+|-=+.
T Consensus 6 ~d~~~d~C~~CG~C~~~CP~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~e~ld~C~~C~~C~~~CP~~V~~~ 77 (400)
T PRK11168 6 SDTSFDSCIKCTVCTTACPVARVNPLYPGPKQAG--PDGERLRLKDPALYDEALKYCSNCKRCEVACPSGVKIG 77 (400)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCC--CHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 7999986668898813188732468888810137--07776440364233466153747488374271999879
No 136
>PRK07118 ferredoxin; Validated
Probab=96.24 E-value=0.0016 Score=44.41 Aligned_cols=65 Identities=17% Similarity=0.332 Sum_probs=42.9
Q ss_pred CHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCC-C--------CCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 021006432901002364543206874003330666412662058-7--------55565466222012121012233
Q gi|254780859|r 149 PLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLE-Q--------SLTSEMQGNIIDLCPVGALTSKP 217 (700)
Q Consensus 149 p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~-~--------~~~~e~~Gncvd~CPvGALt~k~ 217 (700)
.+...|.++|+.|++|+..|- .++|.+........|..... + ...|--|+.|++.||++|++-..
T Consensus 161 g~~~Vd~~~C~~Cg~C~~~CP----~~~I~~~p~~~~~~V~C~s~dkg~~v~~~C~~gCIgC~~C~k~CP~~AI~ie~ 234 (276)
T PRK07118 161 GLPVVDEEKCTGCGACVKACP----KNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAEAITVEN 234 (276)
T ss_pred CCEEEEHHHCCCCCHHHHHCC----HHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEC
T ss_conf 978971656888460444647----55763176666247754566533778863012586627888758826499769
No 137
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=96.22 E-value=0.00088 Score=46.33 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=36.7
Q ss_pred CCHHHCCCCCHHHHHHHHCC------CCCCEEEECCCCCCEEEE--CCCCCC-CCCCCCCEEECCCCCCCC
Q ss_conf 06432901002364543206------874003330666412662--058755-565466222012121012
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVA------GVSELGLVGRGENAEITT--YLEQSL-TSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~------g~~~lg~~~RG~~~~i~~--~~~~~~-~~e~~Gncvd~CPvGALt 214 (700)
..-++||+||.|...|-=.. |... ...||....+.. ..+..+ .|-.||.|...||+|-=+
T Consensus 2 ~~~d~Ci~CG~C~~~CP~~~~~~~~~g~~~--~~~~g~~~~l~~~~~~~~~l~~C~~C~~C~~~CP~gV~~ 70 (397)
T TIGR03379 2 TSFESCIKCTVCTVYCPVAKANPLYPGPKQ--AGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDVKI 70 (397)
T ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCHHH--CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 031227588988373868545788887254--084467665036443415616382768836538799987
No 138
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.20 E-value=0.001 Score=45.78 Aligned_cols=61 Identities=26% Similarity=0.435 Sum_probs=40.4
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 10064329010023645432068740033306664126620587555654662220121210122332
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~ 218 (700)
+..|.+||+-|++|+.+|-- +...++-..+| .. +.-.+-+|.-||.|+..||++|+.-...
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~--~~~~~~~~~~~-~~----~~~~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPA--GVFDLGEDEGG-KP----VVARPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred CEECHHHCCCCCEEEEECCC--CCEECCCCCCC-CE----EEECHHHCCCCCCHHHHCCCCEEEEECC
T ss_conf 38656886899842772887--60883222577-16----8876466865561344488677997335
No 139
>PRK10330 electron transport protein HydN; Provisional
Probab=96.18 E-value=0.0013 Score=45.09 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=27.7
Q ss_pred HHHCCCC--CHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 4329010--0236454320687400333066641266205875556546622201212101
Q gi|254780859|r 155 MNRCIHC--TRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGAL 213 (700)
Q Consensus 155 ~~rCI~C--~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGAL 213 (700)
+..|-|| .-|++.|-. .+|.- ..| .|. +++. .|.-||.|+.+||=||.
T Consensus 55 ~~~C~HC~~p~C~~vCP~----gAi~k-~~G---~V~--vd~~-~CiGC~~C~~ACPyga~ 104 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPN----GAISR-DKG---FVH--VMQE-RCIGCKTCVVACPYGAM 104 (181)
T ss_pred CCCCCCCCCCCHHHHCCC----CCEEE-CCC---EEE--ECCC-CCCCCCCHHHCCCCCCC
T ss_conf 874879899733776877----76997-499---599--8547-29272930133999983
No 140
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.12 E-value=0.0029 Score=42.62 Aligned_cols=82 Identities=15% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHH-HCCCEEEEECCCCCCCCCCH
Q ss_conf 45314785043232355547889863687724202334446643401254677878774-01857999738532257310
Q gi|254780859|r 315 DVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGI-EEADAMLIIGSNPRLEAAVL 393 (700)
Q Consensus 315 ~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~di-e~ad~illiG~Np~~~~Pvl 393 (700)
..++|.++++.+-+ -.+..++.||-+ +. . + ..+...++....+.++ +..|-||++- |--|++
T Consensus 230 ~~~iGIItsG~~y~----~v~eAl~~lG~~-i~----i--l--Klgm~~PLp~~~i~~F~~g~d~VlVVE----E~~p~i 292 (595)
T TIGR03336 230 GAKIGVIASGIAYN----YVKEALERLGVD-VS----V--L--KIGFTYPVPEGLVEEFLSGVEEVLVVE----ELEPVV 292 (595)
T ss_pred CCCEEEEECCCCHH----HHHHHHHHCCCC-CC----E--E--EECCCCCCCHHHHHHHHHCCCEEEEEE----CCCHHH
T ss_conf 99889992281089----999999972999-62----6--8--843767898899999984598899993----583658
Q ss_pred HHHHHHHHHCCCCEEECCCC
Q ss_conf 25778999759970661685
Q gi|254780859|r 394 NARIRKRWRRGNFPIAVIGD 413 (700)
Q Consensus 394 ~~rirka~~~g~~~I~vi~~ 413 (700)
-..||...-+.+..+-+.|.
T Consensus 293 E~qik~~~~~~~~~~~v~GK 312 (595)
T TIGR03336 293 EEQVKALAGTAGLNIKVHGK 312 (595)
T ss_pred HHHHHHHHHHCCCCCEEECC
T ss_conf 99999997516899547788
No 141
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=96.11 E-value=0.0024 Score=43.20 Aligned_cols=65 Identities=17% Similarity=0.358 Sum_probs=43.9
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 0643290100236454320687400333066641266205875556546622201212101223323334443023
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELT 228 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~ 228 (700)
.|++-||.|.-|--.|- +.+|.--.|- |+-+.-.|.+|-.||..|||||+-+=.-..+++||-+.
T Consensus 7 idpeicircntce~tcp----i~aithd~~n-------yvv~~~~cn~c~~ci~pcptg~id~wr~~~~~~~ys~~ 71 (411)
T TIGR03224 7 IDPEICIRCNTCEETCP----IDAITHDDRN-------YVVKADVCNGCMACVSPCPTGAIDNWRTMLRAKAYSLE 71 (411)
T ss_pred CCCCCEEEECCHHHCCC----CCEEEECCCC-------EEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
T ss_conf 79212224055542487----6606757987-------79742013755103798998766444652557776789
No 142
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit; InterPro: IPR010207 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the B subunit.; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=96.09 E-value=0.0039 Score=41.69 Aligned_cols=102 Identities=20% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCC--CCCCC--CCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEE
Q ss_conf 888788837998998389867477756--77878--88560210064329010023645432068740033306664126
Q gi|254780859|r 113 CDQGGECDLQDQAIFFGFGSSRYSEEK--RAVED--KSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEI 188 (700)
Q Consensus 113 Cd~~GeC~LQd~~~~~g~~~~r~~~~k--~~~~~--~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i 188 (700)
|--||+=--..+|...|+....|.... +..+. ....-+...|-++||=||+|+.+|= +++|==..|-.||.|
T Consensus 78 C~PGG~a~~~~lA~~L~v~~~~YsL~~~d~~~~~~a~~~~~VA~I~E~~CIGCTKCiqaCP----VDAIVGa~k~mHTVi 153 (213)
T TIGR01944 78 CPPGGEAVILKLAELLGVENIPYSLQPLDAEAGTIAEQPPMVALIDEENCIGCTKCIQACP----VDAIVGAAKAMHTVI 153 (213)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCC----CCCCCCCCCHHHHHH
T ss_conf 8887078999999983889861125541000363001587048853676848542234588----530106786030125
Q ss_pred EECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 620587555654662220121210122332333444
Q gi|254780859|r 189 TTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRS 224 (700)
Q Consensus 189 ~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rp 224 (700)
.- .|.-|--||+.|||=.+...|..-.-+.
T Consensus 154 ~d------~CTGCdLCv~pCPtdCI~~~p~~~~~~~ 183 (213)
T TIGR01944 154 AD------ECTGCDLCVEPCPTDCIEMRPVPETPKS 183 (213)
T ss_pred HH------HCCCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf 64------3578322245769674301136888420
No 143
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=96.07 E-value=0.0025 Score=43.02 Aligned_cols=58 Identities=22% Similarity=0.460 Sum_probs=39.8
Q ss_pred CCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 8856021006432901002364543206874003330666412662058755565466222012121012
Q gi|254780859|r 145 KSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 145 ~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
+++..++..+..+|+.|++||.+|. .++++.. ....|.. -.|.-||+|.+.||.||.-
T Consensus 182 qH~~~~p~v~e~kc~~c~~cv~~cp----~~Ai~~~---~~~~I~~-----~~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 182 QHLDEKPVVVEEKCYDCGLCVKICP----VGAITLT---KVVKIDY-----EKCIGCGQCMEACPYGAVD 239 (354)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHCC----CCCEECC---CCEEECH-----HHCCCHHHHHHHCCCCCCC
T ss_conf 2456675144311035313666387----7511110---0135332-----3354302255436676503
No 144
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.86 E-value=0.006 Score=40.32 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=58.0
Q ss_pred CCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCC----CCCCCCC--CCEEECCCCCCCCCCCCCCC
Q ss_conf 60210064329010023645432068740033306664126620587----5556546--62220121210122332333
Q gi|254780859|r 148 GPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQ----SLTSEMQ--GNIIDLCPVGALTSKPFAFT 221 (700)
Q Consensus 148 ~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~----~~~~e~~--Gncvd~CPvGALt~k~~~~~ 221 (700)
..||..+.++||-|..|...|....+... ..-.+...|.-..++ ++.|--| --|..+|||||++.. .
T Consensus 2 ~~~i~~~~~~CigC~~Ce~aC~~ah~~~~---~~~~~~pri~v~~~d~~~~pv~C~qCedaPC~~vCP~~AI~~~----~ 74 (165)
T COG1142 2 NRFIIADPEKCIGCRTCEVACVVAHEEIQ---SQSIFLPRIMVIKNDGESAPVVCHHCEDAPCAEVCPVGAITRD----D 74 (165)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHCCCCC---CCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHCCHHHEECC----C
T ss_conf 73277072007770052999998533345---6766787458881478625876888999635665954230415----8
Q ss_pred CCCCCEEEEEECCCCCCCCCE
Q ss_conf 444302352201211688643
Q gi|254780859|r 222 GRSWELTKTDSIDVMDALGSA 242 (700)
Q Consensus 222 ~Rpwel~~~~SvC~~C~~GC~ 242 (700)
+-++-....=--|..|..-|.
T Consensus 75 ~~v~V~~ekCiGC~~C~~aCP 95 (165)
T COG1142 75 GAVQVDEEKCIGCKLCVVACP 95 (165)
T ss_pred CCEEECCCCCCCCCHHHHCCC
T ss_conf 965871221658524664098
No 145
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=95.84 E-value=0.0016 Score=44.55 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=34.4
Q ss_pred HHCCCCCHHHHHHHHCCCCCCEEEECC--------CCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 329010023645432068740033306--------66412662058755565466222012121012
Q gi|254780859|r 156 NRCIHCTRCVRFITEVAGVSELGLVGR--------GENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 156 ~rCI~C~RCVR~c~Ev~g~~~lg~~~R--------G~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
++|++||+|+-.|-- +.. .++..| |...++.. .+..+.|..|++|.+.||.|.=.
T Consensus 2 ~~C~qCG~Cta~CP~-~~~--~~~~pR~iir~~~~G~~e~vl~-s~~lW~C~tC~~C~~~CP~gV~~ 64 (144)
T TIGR03290 2 KACYQCGTCTGSCPS-GRR--TSYRTRLIIRKALLGLKDEVIS-DDDLWMCTTCYTCQERCPRDVKI 64 (144)
T ss_pred CCCCCCCCCCCCCCC-CCC--CCCCHHHHHHHHHCCCHHHHCC-CCCCCCCCCCCCHHHHCCCCCCH
T ss_conf 705579998784999-988--8989899999998688023306-88630384737540134899988
No 146
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.83 E-value=0.01 Score=38.55 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=64.3
Q ss_pred EEECCEE--EEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9999999--99688875889999868954612127999645600047999717988702002656645663766685379
Q gi|254780859|r 7 LKVDGIE--IEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEV 84 (700)
Q Consensus 7 ~~Idg~~--v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v 84 (700)
++|||++ +++.+|+++.++.+..|..=. -+.-...|.|--|.|=|+| |++-||.+|+.- -+|-+|
T Consensus 1 f~~ng~~~~~~~~~~~~l~~~lr~~~~~~~----k~gc~~~G~CGaCtVl~dG---~~~~sC~~~~~~------~~g~~v 67 (951)
T TIGR03313 1 FTLNGAPQTLECKLGENVQTLLFNMGMHSV----RNSDDGFGFAGSDAILFNG---VLKNASLLIAAQ------LEGAEV 67 (951)
T ss_pred CEECCEEEEECCCCCCHHHHHHHHCCCCCC----CCCCCCCCCCCCCEEEECC---EEEEHHHCCHHH------HCCCEE
T ss_conf 947997757426812249999997689467----5254899887615899989---184510331988------579879
Q ss_pred EECCHHHHHHHHHHHHH-HHHCCCCCCCCCCCC
Q ss_conf 81998999999999999-982789988778887
Q gi|254780859|r 85 FTKSSMVKKARAGVMEF-LLINHPLDCPICDQG 116 (700)
Q Consensus 85 ~t~s~~v~~~r~~vle~-ll~nHpldCp~Cd~~ 116 (700)
.|---.....+...++. -+..+-..|-.|--|
T Consensus 68 ~T~egl~~~~~~~~~q~af~~~ga~QCGfCtpg 100 (951)
T TIGR03313 68 RTAESLGQWNQLSLVQQAMVDVGVVQSGYNDPA 100 (951)
T ss_pred EEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 961466986545899999998198516786564
No 147
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein CcoG; InterPro: IPR014116 Member of this ferredoxin-like protein family, include FixG, CcoG and RdxA,. They are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else; it is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum..
Probab=95.82 E-value=0.0024 Score=43.23 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=4.7
Q ss_pred CCCCCCCEEECC
Q ss_conf 565466222012
Q gi|254780859|r 197 TSEMQGNIIDLC 208 (700)
Q Consensus 197 ~~e~~Gncvd~C 208 (700)
+|--||.|||+|
T Consensus 268 ECInC~~CIDAC 279 (474)
T TIGR02745 268 ECINCGLCIDAC 279 (474)
T ss_pred HHHHHHHHHHHH
T ss_conf 543177687444
No 148
>PRK10194 ferredoxin-type protein; Provisional
Probab=95.81 E-value=0.0053 Score=40.69 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=42.2
Q ss_pred CHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCC--CCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 0210064329010023645432068740033306664126620587--555654662220121210122332
Q gi|254780859|r 149 PLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQ--SLTSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 149 p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~--~~~~e~~Gncvd~CPvGALt~k~~ 218 (700)
|.|.++..-|.+|+.|+.+|.+-+=.. ...+-....+.- .+. .+....|+.|.|.||.+|+.-++.
T Consensus 60 P~ldf~~~~C~~C~~C~~aCPtgal~~---~~~~~~~~~~~i-~~~Cl~~~~~~C~~C~d~Cp~~Ai~~~~~ 127 (164)
T PRK10194 60 PSVNFKNNECSFCYACAQACPESLFSP---RHTRAWDLQFTI-GDACLAYQSVECRRCQDSCEPMAIIFRPT 127 (164)
T ss_pred EEEEECCCCCCCCHHHHHHCCHHHCCC---CCCCCCCCEEEE-CCCCCCCCCCCCCHHHHHCCHHHCEEECC
T ss_conf 588746788888346787757754594---435644623520-54330589982000222488877051215
No 149
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=95.76 E-value=0.0038 Score=41.70 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=34.1
Q ss_pred CCHHHCCCCC--HHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 0643290100--2364543206874003330666412662058755565466222012121012
Q gi|254780859|r 153 TVMNRCIHCT--RCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 153 ~d~~rCI~C~--RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
+...+|-||. -||+.|-. .++.- -..+=|..+ ..-.|.-|+.|++.||-|+-.
T Consensus 108 fv~~~C~HC~~P~C~~~CP~----gA~~k---~~~~G~V~~--d~~~CiGC~~C~~aCP~~iP~ 162 (329)
T PRK10882 108 YIKKQCMHCVDPNCVSVCPV----SALTK---DPKTGIVHY--DKDVCTGCRYCMVACPFNVPK 162 (329)
T ss_pred ECCCCCCCCCCCHHHHHCCC----CCEEE---CCCCCEEEE--CCCEECCCCHHHHCCCCCCCC
T ss_conf 66767979899866740997----75587---689954997--157007710675439999974
No 150
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.68 E-value=0.0084 Score=39.26 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=52.8
Q ss_pred CCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCC----CCCCCCCC--CCEEECCCCCCCCCCCCCC
Q ss_conf 56021006432901002364543206874003330666412662058----75556546--6222012121012233233
Q gi|254780859|r 147 IGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLE----QSLTSEMQ--GNIIDLCPVGALTSKPFAF 220 (700)
Q Consensus 147 ~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~----~~~~~e~~--Gncvd~CPvGALt~k~~~~ 220 (700)
++.||..|..+||-|--|-=+|-----....-..+.-+..+|.-..+ .+..|-.| --|+.+||+|||+.+.
T Consensus 1 mn~fi~a~~~~cigc~~cevac~~ah~~~~~~~~~~~f~pr~~v~~~~~~~~~v~c~~ce~apc~~~cp~~ai~~~~--- 77 (654)
T PRK12769 1 MNRFIMANSQQCLGCHACEVACVMAHNDEQHVLSPHHFHPRITVIKHQQQRSAVTCHHCEDAPCARSCPNGAISHVN--- 77 (654)
T ss_pred CCCEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCEEECC---
T ss_conf 98427447242557265888888632543355665545664699925885336020247998156509831058529---
Q ss_pred CCCCCCEEEEEE-CCCCCCCCCE
Q ss_conf 344430235220-1211688643
Q gi|254780859|r 221 TGRSWELTKTDS-IDVMDALGSA 242 (700)
Q Consensus 221 ~~Rpwel~~~~S-vC~~C~~GC~ 242 (700)
..|.+...+. -|-.|.+-|.
T Consensus 78 --~~v~~~~~~cigc~~c~~acp 98 (654)
T PRK12769 78 --DSIQVNQQKCIGCKSCVVACP 98 (654)
T ss_pred --CEEEEECCCCCCCCCHHHCCC
T ss_conf --879983121668621665089
No 151
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.60 E-value=0.0092 Score=38.96 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=45.0
Q ss_pred CCCHHCCCHHHCCCCCHHHHHHHHCCCCCC-EEEECCCCCCEEEECCCC----CCCCCCC--CCEEECCCCCCCCCCCCC
Q ss_conf 560210064329010023645432068740-033306664126620587----5556546--622201212101223323
Q gi|254780859|r 147 IGPLVKTVMNRCIHCTRCVRFITEVAGVSE-LGLVGRGENAEITTYLEQ----SLTSEMQ--GNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 147 ~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~-lg~~~RG~~~~i~~~~~~----~~~~e~~--Gncvd~CPvGALt~k~~~ 219 (700)
++.||..|..+||-|--|-=+|- ++.... .-....-+..+|.-.-+. +..|-.| --|+.+||||||+.+.-
T Consensus 1 mn~~i~a~~~~cigc~~cevac~-~ah~~~~~~~~~~~f~pr~~v~~~~~~~~~~~c~~ce~apc~~~cp~~a~~~~~~- 78 (639)
T PRK12809 1 MNKFIAAEAAECIGCHACEIACA-VAHNQENWPLSHSDFRPRIHVVGKGQAANPVACHHCNNAPCVTACPVNALTFQSD- 78 (639)
T ss_pred CCCEEECCHHHCCCCHHHHHHHH-HHHCCCCCCCCHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHEECCC-
T ss_conf 97416357031538177888888-8627666667421045657998467743570403469982554298034141387-
Q ss_pred CCCCCCCEEEEEE-CCCCCCCCCE
Q ss_conf 3344430235220-1211688643
Q gi|254780859|r 220 FTGRSWELTKTDS-IDVMDALGSA 242 (700)
Q Consensus 220 ~~~Rpwel~~~~S-vC~~C~~GC~ 242 (700)
.+.+..... -|-.|.+-|.
T Consensus 79 ----~~~~~~~~cigc~~c~~~cp 98 (639)
T PRK12809 79 ----SVQLDEQKCIGCKRCAIACP 98 (639)
T ss_pred ----EEEEECCCCCCCCCHHHHCC
T ss_conf ----49985032668632454189
No 152
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=95.46 E-value=0.014 Score=37.69 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred CCCCHHHEECCCCEEECCHHHHHHHHHHHH
Q ss_conf 001101100222202324145668887520
Q gi|254780859|r 282 QRLDCPYARINGRLKPVSWDYALKAIKSAV 311 (700)
Q Consensus 282 dRL~~PliR~~g~~~~iSWdeAl~~ia~~L 311 (700)
-|.-.||+-. .+|||+++.|..-+
T Consensus 238 ~r~g~~~~~~------~~~dei~~ii~~~~ 261 (317)
T COG2221 238 GRVGKPLVPV------EDEDEIIDIIKKTI 261 (317)
T ss_pred CCCCCCCCCC------CCHHHHHHHHHHHH
T ss_conf 6135424334------78889999999999
No 153
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein; InterPro: IPR004494 MauM ferredoxin-type protein is involved in methylamine utilization. NapG ferredoxin-type protein is associated with nitrate reductase activity.; GO: 0006118 electron transport.
Probab=95.45 E-value=0.011 Score=38.53 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=64.0
Q ss_pred HHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECC--CCCCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 3290100236454320687400333066641266205--875556546--6222012121012233233344430-----
Q gi|254780859|r 156 NRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYL--EQSLTSEMQ--GNIIDLCPVGALTSKPFAFTGRSWE----- 226 (700)
Q Consensus 156 ~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~--~~~~~~e~~--Gncvd~CPvGALt~k~~~~~~Rpwe----- 226 (700)
.-||+||-||..|- .+.|.+..=....+.||++ ...--|.+| ==|+-.||||||... .-.-|.-|
T Consensus 53 aACv~CGLCV~~CP----~d~L~LA~WsD~A~~GTPfF~~R~~PC~MC~DiPC~RACPTGAL~~~--l~~Ir~ADMGVAV 126 (213)
T TIGR00397 53 AACVRCGLCVEACP----YDILKLASWSDPAPLGTPFFTAREEPCRMCKDIPCARACPTGALDPL--LTDIRKADMGVAV 126 (213)
T ss_pred CCCCCCCCCCCCCC----CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHCCCEEE
T ss_conf 00100466221064----11354411477777888810478886334768786456886545411--0124541471278
Q ss_pred EEEEEECCCCCCCCCEEEEEC
Q ss_conf 235220121168864366751
Q gi|254780859|r 227 LTKTDSIDVMDALGSAIRIDA 247 (700)
Q Consensus 227 l~~~~SvC~~C~~GC~i~v~v 247 (700)
|..++|-=.|=|..|+|=|.|
T Consensus 127 LVgHETCLNYKGL~CSICVRV 147 (213)
T TIGR00397 127 LVGHETCLNYKGLNCSICVRV 147 (213)
T ss_pred EECCEEECCCCCCCEEEEEEE
T ss_conf 825601003478732377873
No 154
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=95.36 E-value=0.0059 Score=40.37 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=37.0
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCC--CCCCCCCC
Q ss_conf 0643290100236454320687400333066641266205875556546622201212--10122332
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPV--GALTSKPF 218 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPv--GALt~k~~ 218 (700)
+|.++||+|+-|.-+|-|-+ |-. +... .++. .-.-|.=||.|+.+||| -||+-++.
T Consensus 53 ~d~ekCi~C~~Cw~yCPD~a----I~~--~~~k-~~~i---DYdyCKGCGICa~vCP~~~k~l~m~~~ 110 (130)
T PRK09625 53 HNNDICINCFNCWVYCPDAS----ILS--RDKK-LKGV---DYSHCKGCGVCVDVCPTNPKSLLMFEE 110 (130)
T ss_pred CCHHHCCCCCHHHCCCCCCE----EEE--ECCE-EEEE---CHHHCCCCCHHHHHCCCCCCEEEECCH
T ss_conf 17535897230003089837----882--3891-3565---767700622146547999602474122
No 155
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.24 E-value=0.0096 Score=38.84 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=34.5
Q ss_pred CHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCC------CCEEECCCCCCCCCC
Q ss_conf 02100643290100236454320687400333066641266205875556546------622201212101223
Q gi|254780859|r 149 PLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQ------GNIIDLCPVGALTSK 216 (700)
Q Consensus 149 p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~------Gncvd~CPvGALt~k 216 (700)
-.+..|.+|||-|++|+-+|- .+++.+..++... -....-|.+| ..||..||+.||.--
T Consensus 75 ~~v~V~~ekCiGC~~C~~aCP----fGai~~~~~~~~~-----~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv 139 (165)
T COG1142 75 GAVQVDEEKCIGCKLCVVACP----FGAITMVSYPVAA-----KAVAVKCDLCAGREVGPACVEACPTEALELV 139 (165)
T ss_pred CCEEECCCCCCCCCHHHHCCC----CCEEEEEEECCCC-----CCHHHHCCCCCCCCCCCCEEEECCHHHHCCC
T ss_conf 965871221658524664098----6449998506732-----0021115266686678711576788883016
No 156
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.23 E-value=0.011 Score=38.52 Aligned_cols=21 Identities=19% Similarity=0.543 Sum_probs=11.7
Q ss_pred HHCCCHHHCCCCCHHHHHHHH
Q ss_conf 210064329010023645432
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITE 170 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~E 170 (700)
+|..|.+|||-|.-|+.+|-=
T Consensus 119 iV~vd~~~CiGC~~C~~aCPy 139 (225)
T TIGR03149 119 IVDVHKDLCVGCQYCIAACPY 139 (225)
T ss_pred EEEEEHHHCCCHHHHHHCCCC
T ss_conf 799756869404189861999
No 157
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=95.19 E-value=0.0029 Score=42.57 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=43.6
Q ss_pred CCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEE-----EECCCC----CC-CCCCCCCEEECCCCCC
Q ss_conf 888560210064329010023645432068740033306664126-----620587----55-5654662220121210
Q gi|254780859|r 144 DKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEI-----TTYLEQ----SL-TSEMQGNIIDLCPVGA 212 (700)
Q Consensus 144 ~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i-----~~~~~~----~~-~~e~~Gncvd~CPvGA 212 (700)
|-..|+..+-..++||+|+.|...|-=..-+..-...-||--..+ +..... .| .|-.||.|...||+|-
T Consensus 11 ~~~~~~~~~~~v~~Cv~CG~C~~~CPsy~~t~~E~~spRGRi~Llr~~l~g~~~~~~~~~~ld~Cl~C~~C~~~CP~gV 89 (407)
T PRK11274 11 DTPEGDEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSGV 89 (407)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 2997077999999778788663669882102787779509999999998299887789998475718587465378999
No 158
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=95.18 E-value=0.028 Score=35.53 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=9.9
Q ss_pred HCCCEEEEECCCCCCCCC
Q ss_conf 018579997385322573
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAA 391 (700)
Q Consensus 374 e~ad~illiG~Np~~~~P 391 (700)
++.|+.|++|+||-...|
T Consensus 333 k~vDAalvi~sDp~ah~P 350 (429)
T COG1029 333 KEVDAALVIASDPGAHFP 350 (429)
T ss_pred CCCCEEEEEECCCCCCCH
T ss_conf 477737999538411271
No 159
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=94.66 E-value=0.0023 Score=43.27 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=47.6
Q ss_pred CCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCE---------EEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 006432901002364543206874003330666412---------66205875556546622201212101223323334
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAE---------ITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTG 222 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~---------i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~ 222 (700)
......|++|++|+.+|--......+.-.+|-.-.. .....+....|..|+.|++.||+|--+..-....-
T Consensus 5 ~~~~~~Cv~Cg~C~~~CP~~~~~~~~sPrgr~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i~~~~~~~~~r 84 (388)
T COG0247 5 FESLDKCVHCGFCTNVCPSYRATEALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGIDIGDLIREAR 84 (388)
T ss_pred HHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 43304346378452689841206778843158889999850265114448887750053689984887897488999999
Q ss_pred CCCC
Q ss_conf 4430
Q gi|254780859|r 223 RSWE 226 (700)
Q Consensus 223 Rpwe 226 (700)
+-|.
T Consensus 85 ~~~~ 88 (388)
T COG0247 85 RKLA 88 (388)
T ss_pred HHHH
T ss_conf 9876
No 160
>PRK13795 hypothetical protein; Provisional
Probab=94.64 E-value=0.017 Score=37.12 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=11.9
Q ss_pred EECCHHHHHHHHHHHHCC
Q ss_conf 232414566888752013
Q gi|254780859|r 296 KPVSWDYALKAIKSAVLS 313 (700)
Q Consensus 296 ~~iSWdeAl~~ia~~L~~ 313 (700)
++.+|++|+..=.+.|..
T Consensus 211 ~~~t~ed~i~aN~~~l~~ 228 (630)
T PRK13795 211 RPATLEDAIEANRKHLEE 228 (630)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 888899999962999999
No 161
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=94.63 E-value=0.018 Score=36.94 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=39.2
Q ss_pred CHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCC-CCCCCCC------C---CEEECCCCCCCCCC
Q ss_conf 0210064329010023645432068740033306664126620587-5556546------6---22201212101223
Q gi|254780859|r 149 PLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQ-SLTSEMQ------G---NIIDLCPVGALTSK 216 (700)
Q Consensus 149 p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~-~~~~e~~------G---ncvd~CPvGALt~k 216 (700)
=+|..|.++||-|+=|+-+|-= |..-+.. ..+ .--|.|| | .||+.||+|||.-.
T Consensus 93 GiV~vd~d~CIGC~yCi~ACPy--ga~~~~~------------~~~~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG 156 (203)
T COG0437 93 GIVLVDKDLCIGCGYCIAACPY--GAPQFNP------------DKGVVDKCTFCVDRVAVGKLPACVEACPTGALIFG 156 (203)
T ss_pred CEEEECCCCCCCCHHHHHHCCC--CCCEECC------------CCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCC
T ss_conf 7799658722473477864998--8856576------------66712346761767755999740014886654115
No 162
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.57 E-value=0.016 Score=37.25 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=30.1
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 10064329010023645432068740033306664126620587555654662220121210122
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTS 215 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~ 215 (700)
...|.++|.-|++||-+|. .+|++..+ -++.. ..-.|.-||+||..|| .|+..
T Consensus 167 P~~~~E~c~gc~~cv~~C~----~gAI~~~~----~~l~i---d~~~Ci~Cg~Ci~~Cp-~~~~~ 219 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCP----TGAITWDG----KKLKI---DGSKCIGCGKCIRACP-KAAFR 219 (317)
T ss_pred CCCCHHHHCHHHHHHHHCC----CCCEEECC----CEEEE---EHHHCCCCCHHHHHCC-HHHCC
T ss_conf 7248788451576897498----78634224----15898---4543657317766398-65556
No 163
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=94.51 E-value=0.12 Score=30.94 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEECCCCCCC-----CCH-HHHCCCCCCCCCHHH-
Q ss_conf 4566888752013445314785043232355-54788986368772420233444-----664-340125467787877-
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEI-YALKLLMQSLGCENFDCRQNGEY-----LDP-SYGRASYIFNPTIQG- 372 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~-y~~k~l~~~lGt~nid~~~~~~~-----~~~-~~~~~~~~~~~~i~d- 372 (700)
|.+++.++++++.++--+ .++|-++|-++. -+++||+++..=+-+.+.+.... ... -+|| -++|++--.|
T Consensus 188 ~~~i~~~~~~I~~Ak~PV-lLlG~~aS~~~~~~Av~rll~k~~LPvVeTfQgAG~vsrele~~TFfGR-vGLFrNQ~GD~ 265 (553)
T TIGR02418 188 DADIDEVAEAIKNAKLPV-LLLGLRASSQETTEAVRRLLKKTQLPVVETFQGAGVVSRELEDETFFGR-VGLFRNQPGDK 265 (553)
T ss_pred HHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCEEECHHCCCCCCEEC-CCCCCCCCCHH
T ss_conf 889999999998319966-9850478888999999998646068821402005131100245652100-11445870025
Q ss_pred -HHCCCEEEEECCCCCCCCCC
Q ss_conf -40185799973853225731
Q gi|254780859|r 373 -IEEADAMLIIGSNPRLEAAV 392 (700)
Q Consensus 373 -ie~ad~illiG~Np~~~~Pv 392 (700)
|++||+||-||-||-|=-|-
T Consensus 266 LLk~aDLvItIGYdPIEYep~ 286 (553)
T TIGR02418 266 LLKQADLVITIGYDPIEYEPR 286 (553)
T ss_pred HHHHCCEEEEECCCCEECCHH
T ss_conf 775669789833885030755
No 164
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=94.40 E-value=0.069 Score=32.64 Aligned_cols=17 Identities=53% Similarity=0.724 Sum_probs=12.8
Q ss_pred CCCEEEEECCCCCCCCC
Q ss_conf 18579997385322573
Q gi|254780859|r 375 EADAMLIIGSNPRLEAA 391 (700)
Q Consensus 375 ~ad~illiG~Np~~~~P 391 (700)
+-|.++++|+||....|
T Consensus 330 ~ikal~v~g~NP~~s~P 346 (421)
T TIGR03129 330 EVDAALIIGSDPGAHFP 346 (421)
T ss_pred CCCEEEEECCCHHHHCH
T ss_conf 98889997887203388
No 165
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=94.34 E-value=0.01 Score=38.69 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=44.2
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 432901002364543206874003330666412662058755-565466222012121012233233344430
Q gi|254780859|r 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSL-TSEMQGNIIDLCPVGALTSKPFAFTGRSWE 226 (700)
Q Consensus 155 ~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~-~~e~~Gncvd~CPvGALt~k~~~~~~Rpwe 226 (700)
+..||.|++| +.|.+++| .+.+. -+++.++-++ +|..|.-|+.-||++|+-.+.+.----.|+
T Consensus 1 ~s~~~~~~~~-k~~~~~~g--~~ei~------~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~~~~~~~le 64 (411)
T COG4624 1 IKPLQVVSVE-KDDETYDG--KYEIS------SMLEKISISLSDCLACSGCITSCEVKAISLQSGKKVLEELE 64 (411)
T ss_pred CCCCCCCCCC-CCCCCCCC--EEEEE------ECCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHH
T ss_conf 9862247640-14412354--69974------31300024411223650630388677655122079998740
No 166
>TIGR02486 RDH reductive dehalogenase; InterPro: IPR012832 This entry represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as Dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterised enzyme is the tetrachloroethene reductive dehalogenase (1.97.1.8 from EC) which also acts on trichloroethene converting it to dichloroethene..
Probab=94.19 E-value=0.018 Score=36.92 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=10.7
Q ss_pred CCCCCCEEECCCCCCCCCC
Q ss_conf 6546622201212101223
Q gi|254780859|r 198 SEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 198 ~e~~Gncvd~CPvGALt~k 216 (700)
|+.||-|.|.||.||++..
T Consensus 224 C~tC~kCAd~CP~~aI~~~ 242 (338)
T TIGR02486 224 CETCGKCADECPSGAISKE 242 (338)
T ss_pred HHHHHHHHHCCCCCCCCCC
T ss_conf 6655666422862132578
No 167
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.14 E-value=0.07 Score=32.58 Aligned_cols=17 Identities=53% Similarity=0.720 Sum_probs=14.0
Q ss_pred CCCEEEEECCCCCCCCC
Q ss_conf 18579997385322573
Q gi|254780859|r 375 EADAMLIIGSNPRLEAA 391 (700)
Q Consensus 375 ~ad~illiG~Np~~~~P 391 (700)
+.+.++++|+||....|
T Consensus 324 ~i~al~v~~~np~~s~P 340 (415)
T cd02761 324 EADALLIIASDPPAHFP 340 (415)
T ss_pred CCCEEEEECCCCCCCCH
T ss_conf 98889997778664486
No 168
>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]
Probab=93.71 E-value=0.064 Score=32.87 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=42.3
Q ss_pred EEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCC-CCCC-HHHHCCCCHHHEEC-CCCEEECC
Q ss_conf 22012116886436675159999885247888777741135542-2100-00000011011002-22202324
Q gi|254780859|r 230 TDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTR-FIWD-GLKVQRLDCPYARI-NGRLKPVS 299 (700)
Q Consensus 230 ~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGR-f~~d-~~~~dRL~~PliR~-~g~~~~iS 299 (700)
.+-+|..|+.||.|.++. .+.+|.|+ -|+||- ||-+ ..+|.|+.+-.+|. +|+..-++
T Consensus 3 ~~~iCi~CP~gC~i~Ve~---~~~~v~Gn---------~CPRG~ey~~~Ei~~pkrvvts~VrV~ng~~~~vp 63 (117)
T COG3862 3 KEVICIVCPIGCHIKVEL---HIKSVKGN---------RCPRGVEYGKEEITSPKRVVTSTVRVKNGELPVVP 63 (117)
T ss_pred EEEEEEECCCCCEEEEEE---EEEEEECC---------CCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCEEE
T ss_conf 679999858852799987---78887367---------68964565576613863588789997278442465
No 169
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=93.29 E-value=0.047 Score=33.85 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHHHHCCEEECCCCCCCCCCE---EEEECC-E--EEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6688745577047862024720---882088-6--74204432885557407999999999
Q gi|254780859|r 550 DRGAQSADVILPGAAYTEKSGL---WVNTEG-R--VQMGMRAIFPPGDAKEDWEIICALAD 604 (700)
Q Consensus 550 t~tA~~ADVVLP~a~~~Ek~Gt---f~N~Eg-R--vQ~~~~av~p~geak~dw~Il~~La~ 604 (700)
+-|+++|||=.- ++...+|- +++++. + +......++..-..++..+.+..|++
T Consensus 260 D~ta~~ADISvG--~vGs~~GwstVivRt~~G~~~~~~a~~~~~i~~~~~~~l~~~~kl~~ 318 (346)
T PRK09326 260 DYTSVFADISVG--SVGAPDGWNSVFIRTDAGEKYFDMVREEMEIMEDPKPGLELVEKLIK 318 (346)
T ss_pred CCCCCCCCCCCC--CCCCCCCEEEEEEECHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHH
T ss_conf 635653135546--66788966899997865799999999708150267746899999987
No 170
>TIGR00276 TIGR00276 iron-sulfur cluster binding protein, putative; InterPro: IPR004453 This is a family of putative iron-sulphur cluster binding proteins. These proteins contain the 4Fe-4S ferredoxins iron-sulphur binding domain..
Probab=93.08 E-value=0.027 Score=35.60 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=20.4
Q ss_pred EEECCCCC--C--CCCCCCCEEECCCCCCCCCC
Q ss_conf 66205875--5--56546622201212101223
Q gi|254780859|r 188 ITTYLEQS--L--TSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 188 i~~~~~~~--~--~~e~~Gncvd~CPvGALt~k 216 (700)
|--..++| . .|-.|+.|+++||||||.+-
T Consensus 160 iPl~~d~PsW~~~~CG~C~~C~~aCPT~AlVep 192 (297)
T TIGR00276 160 IPLKADKPSWIEERCGKCTKCLDACPTQALVEP 192 (297)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHCCC
T ss_conf 677936884324578732246632852020066
No 171
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=93.03 E-value=0.078 Score=32.27 Aligned_cols=64 Identities=25% Similarity=0.446 Sum_probs=47.5
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECC-C--CCC---------------CCCCCCCEEECCCCC
Q ss_conf 2100643290100236454320687400333066641266205-8--755---------------565466222012121
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYL-E--QSL---------------TSEMQGNIIDLCPVG 211 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~-~--~~~---------------~~e~~Gncvd~CPvG 211 (700)
+...|..+||=|+||=+.| |-++|.+.|.-++=|+.-.. | ... .|-=||.|.-+||..
T Consensus 15 ~~~ID~~kCIGCGRCfKVC----gr~Vl~L~G~~EeGE~V~~~~de~d~dDdE~~rkvM~~~~~~~CIGC~AC~rVCPk~ 90 (96)
T TIGR02936 15 VTSIDQEKCIGCGRCFKVC----GRDVLTLKGINEEGELVDPSDDEEDDDDDEIERKVMVLANPGNCIGCGACARVCPKK 90 (96)
T ss_pred HHHCCHHCCCCCCCCCCCC----CCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 3111431075454631417----867642221246785763888873346887344277742877850423477056886
Q ss_pred CCCCCC
Q ss_conf 012233
Q gi|254780859|r 212 ALTSKP 217 (700)
Q Consensus 212 ALt~k~ 217 (700)
+-|=.|
T Consensus 91 CqTH~p 96 (96)
T TIGR02936 91 CQTHAP 96 (96)
T ss_pred CCCCCC
T ss_conf 310589
No 172
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=92.52 E-value=0.063 Score=32.92 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=14.2
Q ss_pred CCCHHHCCCCCHHHHHHHH
Q ss_conf 0064329010023645432
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITE 170 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~E 170 (700)
.+|.+|||-|.-|.-+|..
T Consensus 7 ViDLdKCIGC~tCsVACK~ 25 (321)
T TIGR03478 7 VIDLNKCIGCQTCTVACKN 25 (321)
T ss_pred EEECCCCCCCCHHHHHHCC
T ss_conf 9867826685601546475
No 173
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=92.51 E-value=0.034 Score=34.90 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=29.8
Q ss_pred CCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEEEEECCCCCC---CCCEE
Q ss_conf 556546622201212101223-3233344430235220121168---86436
Q gi|254780859|r 196 LTSEMQGNIIDLCPVGALTSK-PFAFTGRSWELTKTDSIDVMDA---LGSAI 243 (700)
Q Consensus 196 ~~~e~~Gncvd~CPvGALt~k-~~~~~~Rpwel~~~~SvC~~C~---~GC~i 243 (700)
-.|..||.|+.+||.|||+-. ......+.|++.. .-|.+|| --|..
T Consensus 38 ekCigC~~C~~~CP~~AI~~~~~~~~~~~~~~id~--~rCifCG~C~evCPt 87 (178)
T PRK12387 38 QQCIGCAACVNACPSNALTVETDLATGELAWQFNL--GRCIFCGRCEEVCPT 87 (178)
T ss_pred HHCCCHHHHHHHCCCCCCEEEECCCCCCEEEEECC--CCCCCCCHHHHHCCC
T ss_conf 11628479996586312875404778835788630--406686715666882
No 174
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=92.49 E-value=0.012 Score=38.15 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=13.9
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEECCC
Q ss_conf 74018579997385322573102577899975-997066168
Q gi|254780859|r 372 GIEEADAMLIIGSNPRLEAAVLNARIRKRWRR-GNFPIAVIG 412 (700)
Q Consensus 372 die~ad~illiG~Np~~~~Pvl~~rirka~~~-g~~~I~vi~ 412 (700)
.+.+...+++.=.| .-|..-..++.+... ....|.+++
T Consensus 192 ~i~~~~~~vIaied---~kp~ai~~l~~a~~~~~~i~I~~lp 230 (529)
T COG4656 192 KILKPKEVVIAIED---NKPEAIAALRAALFGDRDIKIHVLP 230 (529)
T ss_pred HHCCCCEEEEEEEC---CCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 75165047998745---9778899999974358744999767
No 175
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=92.48 E-value=0.082 Score=32.10 Aligned_cols=99 Identities=17% Similarity=0.304 Sum_probs=53.0
Q ss_pred CEEECCHHHHHHHHHH-HHCCC----CCCEEEEECCCCCCHHHHHH-HHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCC
Q ss_conf 2023241456688875-20134----45314785043232355547-889863687724202334446643401254677
Q gi|254780859|r 294 RLKPVSWDYALKAIKS-AVLSS----DVKLGAVVGDLSSVEEIYAL-KLLMQSLGCENFDCRQNGEYLDPSYGRASYIFN 367 (700)
Q Consensus 294 ~~~~iSWdeAl~~ia~-~L~~~----~~~~g~~~g~~~t~Ee~y~~-k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~ 367 (700)
+|..-.|..+.+.+.+ ++.++ ..++|.++++.+ |.+ +.....+|-..--..... .+.
T Consensus 221 ~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~a-----y~yVkeAl~~lgl~~~~lklg~------------~~P 283 (640)
T COG4231 221 RKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIA-----YNYVKEALEDLGLDDELLKLGT------------PYP 283 (640)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC-----HHHHHHHHHHCCCCCEEEEECC------------CCC
T ss_conf 88999999999998648656313688785689935721-----7999999997588741789458------------757
Q ss_pred CCHHH----HHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 87877----40185799973853225731025778999759970661685
Q gi|254780859|r 368 PTIQG----IEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGD 413 (700)
Q Consensus 368 ~~i~d----ie~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~ 413 (700)
-+... ++.-+.+|++- |-.|++-.++|....+.+..+.+.+.
T Consensus 284 lp~~~i~~F~~g~~~vlVVE----E~~P~iE~qv~~~l~~~~~~~~v~GK 329 (640)
T COG4231 284 LPEQLIENFLKGLERVLVVE----EGEPFIEEQVKALLYDAGLPVEVHGK 329 (640)
T ss_pred CCHHHHHHHHHCCCEEEEEE----CCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 88899999982684799995----58704899999998754885474034
No 176
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein CcoG; InterPro: IPR014116 Member of this ferredoxin-like protein family, include FixG, CcoG and RdxA,. They are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else; it is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum..
Probab=92.34 E-value=0.059 Score=33.13 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 58533475424675
Q gi|254780859|r 482 ISDSWNGFAVLHTV 495 (700)
Q Consensus 482 ig~~g~G~~~L~~~ 495 (700)
-.|+.-.++++++.
T Consensus 341 ~~r~~~~l~v~R~r 354 (474)
T TIGR02745 341 STREPMDLNVLRDR 354 (474)
T ss_pred HCCCCCEEEEECCC
T ss_conf 20475036886589
No 177
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=92.32 E-value=0.042 Score=34.23 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=26.4
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 565466222012121012233233344430235220121168864366
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAIR 244 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i~ 244 (700)
.|..||.|+.+||+||++..+-..+.+-|..+ =.-|..|..-|...
T Consensus 43 kCigC~~C~~~CP~~aI~~~~~~~~~~i~~~~--Ci~Cg~C~~~CP~~ 88 (111)
T PRK08348 43 KCVGCRMCVTVCPAGVFVYLPEIRKVALWTGR--CVFCGQCVDVCPTG 88 (111)
T ss_pred CCCCCCHHHHHCCCCCCEECCCCCEEEECCCC--CCCCCCCCCCCCCC
T ss_conf 28280728775932206752776667877790--85388757737728
No 178
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=92.24 E-value=0.48 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=13.3
Q ss_pred CEEEEEECCCCCCCCCEEEEECC
Q ss_conf 02352201211688643667515
Q gi|254780859|r 226 ELTKTDSIDVMDALGSAIRIDAR 248 (700)
Q Consensus 226 el~~~~SvC~~C~~GC~i~v~v~ 248 (700)
|+.+--|||.. ..+..|+|-||
T Consensus 49 e~RRSYSIC~~-~~~~~~rvAvk 70 (371)
T TIGR02160 49 ELRRSYSICDA-PAPGEIRVAVK 70 (371)
T ss_pred CCCEEEEECCC-CCCCCCEEEEE
T ss_conf 11302222167-79896338899
No 179
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=92.21 E-value=0.048 Score=33.81 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=22.5
Q ss_pred CHHHCCCCCHHHHHHHHCCCCCCEEEECCCCC---CEEEECCC--CCCCCCCCCCEEECCCC
Q ss_conf 64329010023645432068740033306664---12662058--75556546622201212
Q gi|254780859|r 154 VMNRCIHCTRCVRFITEVAGVSELGLVGRGEN---AEITTYLE--QSLTSEMQGNIIDLCPV 210 (700)
Q Consensus 154 d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~---~~i~~~~~--~~~~~e~~Gncvd~CPv 210 (700)
+.++|+.|+=||-+|-- ++|.+-....- ..++.+.. .+-.|.-||.|.++||+
T Consensus 10 d~glCtGCGaCvavCP~----~~I~~~~~~~~~~p~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 67 (346)
T PRK09326 10 NHDVCAACGACEAVCPI----GAVTVKKAAEIRDPNDLSLYEKGAAYQVCEGCLTCSRICPV 67 (346)
T ss_pred CCCCCCCCHHHHHHCCC----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 59845786027760577----87997236665687643311566673327886726663889
No 180
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.15 E-value=0.09 Score=31.80 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=8.3
Q ss_pred CCEEECCCCCCCCCC
Q ss_conf 622201212101223
Q gi|254780859|r 202 GNIIDLCPVGALTSK 216 (700)
Q Consensus 202 Gncvd~CPvGALt~k 216 (700)
-=|...||+|--...
T Consensus 47 ~PC~~aCP~~~dip~ 61 (560)
T PRK12771 47 PPCNAACPAGEDIRG 61 (560)
T ss_pred CCCCCCCCCCCCHHH
T ss_conf 974557989897899
No 181
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=92.00 E-value=0.5 Score=26.44 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=37.0
Q ss_pred CCEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 1049999999999688875889999868954612127999645600047999717
Q gi|254780859|r 3 MMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKG 57 (700)
Q Consensus 3 ~mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~ 57 (700)
||+++.+||+++++++++|+-+...+.|+.. +-++|+++|
T Consensus 1 ~~m~i~~ng~~~e~~~~~tv~dLL~~l~~~~---------------~~vav~vNg 40 (68)
T COG2104 1 MPMTIQLNGKEVEIAEGTTVADLLAQLGLNP---------------EGVAVAVNG 40 (68)
T ss_pred CCEEEEECCEEEECCCCCCHHHHHHHHCCCC---------------CEEEEEECC
T ss_conf 9589998998988378873999999729998---------------559999889
No 182
>PRK07440 hypothetical protein; Provisional
Probab=91.96 E-value=0.28 Score=28.26 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=41.8
Q ss_pred CCCCEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCCC
Q ss_conf 96104999999999968887588999986895461212799964560004799971798-870200265664566
Q gi|254780859|r 1 MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIA-SKPQASCAMNVSDLR 74 (700)
Q Consensus 1 ~~~mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~-~k~~~sC~t~v~~gm 74 (700)
|.-+++|+|||++.+++++.||-+..+..|++- +.=.||+.+.- || --=-.|.+++|-
T Consensus 1 m~~~i~I~vNGe~~~~~~~~ti~~LL~~l~~~~---------------~~vaVE~N~~Iv~r-~~~~~~~l~~gD 59 (70)
T PRK07440 1 MSNPITLQVNGETRTCSPGTTLPDLLQQLGFNP---------------RLVAVEYNGEILHR-QFWEQTQVQPGD 59 (70)
T ss_pred CCCCCEEEECCEEEECCCCCCHHHHHHHCCCCC---------------CEEEEEECCEEECH-HHCCCEECCCCC
T ss_conf 998419999998878599998999998769998---------------76999968867086-770710679999
No 183
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=91.88 E-value=0.084 Score=32.03 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=46.7
Q ss_pred CCCCCEEECCCCCCCCCCCCC-CCCCCCCEEEEEECCCCCC---CCC-EEEEE-CCCCEEEEEECCCCCCCCCCEECCCC
Q ss_conf 546622201212101223323-3344430235220121168---864-36675-15999988524788877774113554
Q gi|254780859|r 199 EMQGNIIDLCPVGALTSKPFA-FTGRSWELTKTDSIDVMDA---LGS-AIRID-ARGCEVMRILPRINESINEEWISDKT 272 (700)
Q Consensus 199 e~~Gncvd~CPvGALt~k~~~-~~~Rpwel~~~~SvC~~C~---~GC-~i~v~-v~~g~i~rv~~~~~~~vN~g~lC~KG 272 (700)
|+.=-+|++||||||+-|..+ -....-.|+-...=|.+|| .-| .+.+. -++..+-=..| |.++.-+
T Consensus 205 esqv~~Va~CPtgAl~p~kv~~~~~~~~~l~v~~~kCi~CG~Cy~~Cpa~~~~D~~~~g~Ai~vG--------Gk~snar 276 (366)
T TIGR02066 205 ESQVSVVAACPTGALKPRKVRIVEGEKKSLEVDEEKCIYCGNCYTMCPAMPIDDPEDDGAAILVG--------GKLSNAR 276 (366)
T ss_pred CCCEEEEEECCHHHCCCCEEEEECCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEC--------CEECCCC
T ss_conf 45278994477000553256654673345898473111027745531278777876771699925--------5232478
Q ss_pred CCCCCHHHH--CCCCHHHEECCCCEEECCHHHHHHHHHHHHCC
Q ss_conf 221000000--00110110022220232414566888752013
Q gi|254780859|r 273 RFIWDGLKV--QRLDCPYARINGRLKPVSWDYALKAIKSAVLS 313 (700)
Q Consensus 273 Rf~~d~~~~--dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~ 313 (700)
..| +||.-|.|=.+ |==|+|+...+.+-|..
T Consensus 277 ------~~P~l~kv~~p~iPn~----PPRwpe~v~~VKkil~~ 309 (366)
T TIGR02066 277 ------VKPRLSKVVVPWIPNN----PPRWPEIVAVVKKILEA 309 (366)
T ss_pred ------CCCEEEEEEEECCCCC----CCCHHHHHHHHHHHHHH
T ss_conf ------7871568976056822----26607899999899899
No 184
>pfam00205 TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain. The central domain of TPP enzymes contains a 2-fold Rossman fold.
Probab=91.87 E-value=0.75 Score=25.16 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=37.8
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHHHHCCCE
Q ss_conf 888752013445314785043232-355547889863687724202334446643----4012546778-7877401857
Q gi|254780859|r 305 KAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQGIEEADA 378 (700)
Q Consensus 305 ~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~die~ad~ 378 (700)
+.+++.|++.+.-. .++|..... +..-.+++|.+.+|.+-+.+......++.. .|......+. ...-++++|+
T Consensus 2 ~~~~~~l~~AkrPv-ii~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~~~~~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (138)
T pfam00205 2 EKAAELLAAAKRPV-ILVGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYLGMLGMHGTPAANEALEEADL 80 (138)
T ss_pred HHHHHHHHHCCCEE-EEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCE
T ss_conf 89999999689919-99897835221899999999984998792111256789888655775776577999865533999
Q ss_pred EEEECCCCCC
Q ss_conf 9997385322
Q gi|254780859|r 379 MLIIGSNPRL 388 (700)
Q Consensus 379 illiG~Np~~ 388 (700)
||++|+...+
T Consensus 81 vl~lG~~l~~ 90 (138)
T pfam00205 81 VLAIGARFDD 90 (138)
T ss_pred EEEECCCCCC
T ss_conf 9997888786
No 185
>PRK08611 pyruvate oxidase; Provisional
Probab=91.66 E-value=0.39 Score=27.21 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCC-CCHHHHHC
Q ss_conf 4566888752013445314785043232355547889863687724202334446643----401254677-87877401
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFN-PTIQGIEE 375 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~-~~i~die~ 375 (700)
+++++.+++.|+..+.-. .++|.... ...-.+.+|+..+|.+-+.+......++.. .|......+ ....-+++
T Consensus 190 ~~~i~~a~~~L~~AkrPv-Ii~G~G~~-~a~~~l~~Lae~l~~PV~tt~~gkg~~pedhpl~~G~~G~~g~~~a~~~l~~ 267 (576)
T PRK08611 190 KKDIKKAAKLINKAKKPV-ILAGVGAK-HAKDELLEFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQE 267 (576)
T ss_pred HHHHHHHHHHHHHCCCCE-EECCHHHH-HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 999999999998566987-76375688-9999999999997989895145578668767300365434575899998623
Q ss_pred CCEEEEECCCCC
Q ss_conf 857999738532
Q gi|254780859|r 376 ADAMLIIGSNPR 387 (700)
Q Consensus 376 ad~illiG~Np~ 387 (700)
||+||++|++..
T Consensus 268 aDlvl~lGt~~~ 279 (576)
T PRK08611 268 ADLLIMVGTNYP 279 (576)
T ss_pred CCEEEEECCCCC
T ss_conf 787999799877
No 186
>pfam06902 DUF1271 Protein of unknown function (DUF1271). This family consists of a number of hypothetical bacterial proteins of around 70 residues in length. Members of this family contain three highly conserved cysteine residues. The function of this family is unknown.
Probab=91.64 E-value=0.026 Score=35.67 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=36.1
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 21006432901002364543206874003330666412662058755565466222012121012
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
-|..|+.+|||=+-|||-.-+|=... .|+. |.+ ..-+.+--=..|+.||.|||+
T Consensus 7 tV~~~~~~C~hag~Cv~~~p~VF~~~-----~~pw---i~p---d~a~~e~i~~~i~~CPSGALs 60 (64)
T pfam06902 7 TIYDNPGLCIHAGNCVRGLPGVFNPG-----RKPW---IHP---DAASTEEIIAIIDRCPSGALS 60 (64)
T ss_pred EEEECCCCCCCHHHHHHCCCCCCCCC-----CCCC---CCC---CCCCHHHHHHHHHHCCCHHCE
T ss_conf 99967772456658873791004889-----8873---788---998999999999849721116
No 187
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=91.28 E-value=0.14 Score=30.49 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCCCCCC-CCCCC-CCCCCCCCHHCCCHHHCCCC----CHHHHHHHHCCCCCCEEEECCCCCCEEEECCC
Q ss_conf 37998998389867477-75677-87888560210064329010----02364543206874003330666412662058
Q gi|254780859|r 120 DLQDQAIFFGFGSSRYS-EEKRA-VEDKSIGPLVKTVMNRCIHC----TRCVRFITEVAGVSELGLVGRGENAEITTYLE 193 (700)
Q Consensus 120 ~LQd~~~~~g~~~~r~~-~~k~~-~~~~~~~p~i~~d~~rCI~C----~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~ 193 (700)
+|...-..||++.=-|. .-|-. -|.- |+..-.-|-++= --|-|.|+|=++..--..+|-|..|.--..++
T Consensus 86 kL~~I~e~YGp~~Igf~~ssr~tGNEe~----Y~~QKlAR~~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~s~~~~~ie 161 (694)
T TIGR01591 86 KLKEIKEKYGPDSIGFIASSRITGNEEN----YLLQKLARAVLGTNNVDNCARVCHEPSVAGLKQTVGIGAMSNTISDIE 161 (694)
T ss_pred HHHHHHHCCCCCHHHHHHCCCCCCCHHH----HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 9998862148321444203788752367----899999999850377455454037878999997624553355203443
Q ss_pred CCCCCC-CCCCEEECCCCCC
Q ss_conf 755565-4662220121210
Q gi|254780859|r 194 QSLTSE-MQGNIIDLCPVGA 212 (700)
Q Consensus 194 ~~~~~e-~~Gncvd~CPvGA 212 (700)
..--=- +=-|.+|.=||=|
T Consensus 162 ~a~~ivi~G~N~~esHPvv~ 181 (694)
T TIGR01591 162 NADLIVIIGANPAESHPVVA 181 (694)
T ss_pred CCCEEEEECCCCCCCCHHHH
T ss_conf 27758997567655543689
No 188
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=91.28 E-value=0.038 Score=34.48 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=38.1
Q ss_pred CCHHHCCCCCHHHH--HHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEE
Q ss_conf 06432901002364--54320687400333066641266205875556546622201212101223-3233344430235
Q gi|254780859|r 153 TVMNRCIHCTRCVR--FITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSK-PFAFTGRSWELTK 229 (700)
Q Consensus 153 ~d~~rCI~C~RCVR--~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k-~~~~~~Rpwel~~ 229 (700)
.|+.||=||..|+- .|-.-|=...=|++. +| ..+.|.=||+|-.+||=-|+..= ++.-+-|.-|+++
T Consensus 145 idrk~Ck~C~~C~~re~CP~~AI~~~dg~~d-----~I-----~LlkC~GCG~Cke~CPynAI~gG~e~e~rVR~vDaeN 214 (237)
T TIGR02700 145 IDRKKCKLCEKCVDREACPREAISKKDGVVD-----EI-----RLLKCVGCGKCKEVCPYNAIKGGKEVEMRVRKVDAEN 214 (237)
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHCCCCCC-----EE-----EEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECHHH
T ss_conf 6687412478898734577113341078101-----11-----0010247887533585445017801699885206477
Q ss_pred EEE
Q ss_conf 220
Q gi|254780859|r 230 TDS 232 (700)
Q Consensus 230 ~~S 232 (700)
|+-
T Consensus 215 vrk 217 (237)
T TIGR02700 215 VRK 217 (237)
T ss_pred HHH
T ss_conf 898
No 189
>PRK08617 acetolactate synthase; Reviewed
Probab=91.26 E-value=1.1 Score=23.83 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCEECCCCCCCCCH-----HHHCCCCCCCCCH-HH
Q ss_conf 1456688875201344531478504323-235554788986368772420233444664-----3401254677878-77
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLSS-VEEIYALKLLMQSLGCENFDCRQNGEYLDP-----SYGRASYIFNPTI-QG 372 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~t-~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~-----~~~~~~~~~~~~i-~d 372 (700)
-++.++.+++.|++.+.-. .++|.... .+..-.+++|+..+|.+-+.+......++. ..|......+..- .-
T Consensus 187 ~~~~i~~a~~~L~~AkrPv-ii~G~g~~~~~~~~~l~~lae~~~iPv~tt~~gkg~i~~~h~~~~~G~~G~~~~~~~~~~ 265 (552)
T PRK08617 187 SPEDINYLAELIKNAKLPV-LLLGMRASDPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPGDEL 265 (552)
T ss_pred CHHHHHHHHHHHHHCCCCE-EEECHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9999999999998465874-883222333649999999888749848844677736697655242552466576999999
Q ss_pred HHCCCEEEEECCCCCCCCCCH
Q ss_conf 401857999738532257310
Q gi|254780859|r 373 IEEADAMLIIGSNPRLEAAVL 393 (700)
Q Consensus 373 ie~ad~illiG~Np~~~~Pvl 393 (700)
++++|+||++|+++.+-.|..
T Consensus 266 l~~aDlvl~lG~~~~~~~~~~ 286 (552)
T PRK08617 266 LKKADLVITIGYDPIEYEPRN 286 (552)
T ss_pred HHHCCEEEEEECCCCCCCCCC
T ss_conf 861785899724652015423
No 190
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=91.21 E-value=0.049 Score=33.70 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=6.5
Q ss_pred HCCCEEEEECCCC
Q ss_conf 0185799973853
Q gi|254780859|r 374 EEADAMLIIGSNP 386 (700)
Q Consensus 374 e~ad~illiG~Np 386 (700)
..++-+|++|.|.
T Consensus 63 p~aksvI~igv~y 75 (337)
T COG1600 63 PGAKSVISLGVNY 75 (337)
T ss_pred CCCCEEEEEEECC
T ss_conf 5774699997216
No 191
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=90.72 E-value=0.27 Score=28.39 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=25.7
Q ss_pred HCCEEECCCC------CCCCCCEEEEECCE-------EEEECCCCCCCCCCCHHH-HHHHHHH
Q ss_conf 4557704786------20247208820886-------742044328855574079-9999999
Q gi|254780859|r 555 SADVILPGAA------YTEKSGLWVNTEGR-------VQMGMRAIFPPGDAKEDW-EIICALA 603 (700)
Q Consensus 555 ~ADVVLP~a~------~~Ek~Gtf~N~EgR-------vQ~~~~av~p~geak~dw-~Il~~La 603 (700)
-||.|+.|-. ++++.|.=++--|+ .|...+-|..-|+++..- -|+.+++
T Consensus 764 ~aDtVI~AIGQ~~d~~~l~~~GIeld~rG~I~vD~~t~~TS~pGVFAaGD~v~GpstVV~AIa 826 (1012)
T TIGR03315 764 PADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIA 826 (1012)
T ss_pred ECCEEEECCCCCCCCCHHHCCCCEECCCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 889999987889985402124840889989886888787899998880066757789999999
No 192
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit; InterPro: IPR006443 This family of sequences describe a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex aeolicus. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilised mainly in the nitrate respiration by nitrate reductase . In Escherichia coli and Salmonella typhi, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in Escherichia coli which contain selenocysteine .; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0005737 cytoplasm.
Probab=90.72 E-value=0.17 Score=29.73 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCCCCH----HHHHHCCCEEEECCCCHHH-----------CC-CCCCEEEHHHHHHHH
Q ss_conf 7542467531045210177658652368----8886016759980764220-----------16-654345022116666
Q gi|254780859|r 488 GFAVLHTVASRVGALDLGFVPADDTINA----MNILDKTDIVFLLGADELD-----------FS-DKQALTVYIGSHGDR 551 (700)
Q Consensus 488 G~~~L~~~~n~~Ga~d~g~~P~~~~~~~----~~~~~~~~~l~~~g~d~l~-----------~~-~~~~fvV~~d~~~t~ 551 (700)
|+.++-.||+..-+--+..|...-+..+ .--+.+.++++++|+||.+ +- ++-+-+|++|+..+.
T Consensus 194 Gl~~~e~QA~i~H~pTVAsLApsfGRGAMTNnWvDikNsdli~v~GgNPAEnHP~gFkWai~Akek~GAkiI~iDPRfnR 273 (1043)
T TIGR01553 194 GLVAVENQARICHAPTVASLAPSFGRGAMTNNWVDIKNSDLILVMGGNPAENHPVGFKWAIKAKEKKGAKIIVIDPRFNR 273 (1043)
T ss_pred CCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCEEHHHHHCCCCCEEEEECCCCCC
T ss_conf 62121103602343315543155576664255141103668897177872026765100221111378779997889871
Q ss_pred HHHHCCEEECC
Q ss_conf 88745577047
Q gi|254780859|r 552 GAQSADVILPG 562 (700)
Q Consensus 552 tA~~ADVVLP~ 562 (700)
||..||+.-|.
T Consensus 274 Ta~vaDl~api 284 (1043)
T TIGR01553 274 TAAVADLYAPI 284 (1043)
T ss_pred CHHHCEEEEEC
T ss_conf 01001133216
No 193
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=90.70 E-value=0.048 Score=33.80 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=7.5
Q ss_pred HHHHHHHHCCC-----CEEECCC
Q ss_conf 57789997599-----7066168
Q gi|254780859|r 395 ARIRKRWRRGN-----FPIAVIG 412 (700)
Q Consensus 395 ~rirka~~~g~-----~~I~vi~ 412 (700)
..+++++.... ..|.+++
T Consensus 215 ~al~~a~~~~~~Pt~~i~v~vlp 237 (444)
T TIGR01945 215 AALKKALEGYPKPTKNIKVRVLP 237 (444)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 99999860278887754788841
No 194
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=90.68 E-value=0.057 Score=33.22 Aligned_cols=54 Identities=9% Similarity=-0.015 Sum_probs=28.6
Q ss_pred CCCCCCEEEEEECCCCCCCCCEEEEECCCC-EEEEEECCC-CC-CCCCCEECCCCCCC
Q ss_conf 344430235220121168864366751599-998852478-88-77774113554221
Q gi|254780859|r 221 TGRSWELTKTDSIDVMDALGSAIRIDARGC-EVMRILPRI-NE-SINEEWISDKTRFI 275 (700)
Q Consensus 221 ~~Rpwel~~~~SvC~~C~~GC~i~v~v~~g-~i~rv~~~~-~~-~vN~g~lC~KGRf~ 275 (700)
.++.-|...+-|.-+|||.|--+.+.+.+= +++|.+--. |. |.--| .|+--|+|
T Consensus 18 ~a~eVDVVTtGTfg~M~ssga~lnf~~~~P~~f~k~~~v~LNgVpay~G-pcpne~lg 74 (391)
T TIGR03287 18 TVEDVDVVTCATCGIMSGTYAVFSFPVSEPGSFRRAEEVYLNGIPAVVG-PCPNERLG 74 (391)
T ss_pred CCCCCCEEECCCCCCCCCCEEEEECCCCCCCHHCEEEEEEECCEECCCC-CCCCCCCE
T ss_conf 1140678946652444464178985779964100678898878213566-88632323
No 195
>PRK06154 hypothetical protein; Provisional
Probab=90.53 E-value=1.2 Score=23.61 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCCH-HHHH
Q ss_conf 4566888752013445314785043232355-547889863687724202334446643----401254677878-7740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEI-YALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPTI-QGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~-y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~i-~die 374 (700)
+++++.+++.|++.+.- ..++|........ -.+.+|++.+|.+-+.+......++.. .|......+... .-++
T Consensus 193 ~~~i~~a~~~L~~A~rP-vii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~pe~hpl~~G~~G~~~~~~~~~~l~ 271 (556)
T PRK06154 193 PDTVRAAARLLLAAKRP-VIHAGQGVLQAGATPELVELAELLSIPVMTTLSGKSGFPERHPLALGSGGMAWPATVAHFLR 271 (556)
T ss_pred HHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999727898-89968875631479999999998596613253057688766864457777777699999872
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 185799973853225
Q gi|254780859|r 375 EADAMLIIGSNPRLE 389 (700)
Q Consensus 375 ~ad~illiG~Np~~~ 389 (700)
+||+||.+|++..+.
T Consensus 272 ~aDlil~iG~~l~~~ 286 (556)
T PRK06154 272 TADLLFGVGASLTKS 286 (556)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 167799964577765
No 196
>PRK08322 acetolactate synthase; Reviewed
Probab=90.30 E-value=1.4 Score=23.31 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC-H-HHH
Q ss_conf 4566888752013445314785043232-355547889863687724202334446643----40125467787-8-774
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT-I-QGI 373 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~-i-~di 373 (700)
.+.++.+++.|++.+.-. .++|..... +..-.+++|+..+|.+-+.+......++.. .|... ..... . .-+
T Consensus 183 ~~~l~~a~~~L~~AkrPv-Ii~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~p~~hp~~~G~~g-~~~~~~~~~~i 260 (547)
T PRK08322 183 PKAIERAAEAIQAAKNPL-ILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAG-LSQGDYVHCAI 260 (547)
T ss_pred HHHHHHHHHHHHHCCCCE-EECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC-CCCCHHHHHHH
T ss_conf 999999999997268978-9868885734099999999998299789604677777988741145554-45669999877
Q ss_pred HCCCEEEEECCCCCCCCC
Q ss_conf 018579997385322573
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAA 391 (700)
Q Consensus 374 e~ad~illiG~Np~~~~P 391 (700)
+++|+||.+|+++.+-.|
T Consensus 261 ~~aDlvl~iG~~l~~~~~ 278 (547)
T PRK08322 261 EHADLIINVGHDVIEKPP 278 (547)
T ss_pred HCCCEEEEECCCCCCCCC
T ss_conf 649868981542565573
No 197
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=90.24 E-value=0.39 Score=27.24 Aligned_cols=136 Identities=22% Similarity=0.272 Sum_probs=72.9
Q ss_pred CCCCC-CHHHHHHHHHHCCCCEEECCCCCH------HHHHHHHC------C--CCCHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 22573-102577899975997066168501------22334430------4--898678888826877889998723531
Q gi|254780859|r 387 RLEAA-VLNARIRKRWRRGNFPIAVIGDVG------ELRYKYEH------L--GNGSEALADLVSGQHPFFKKLQEATRP 451 (700)
Q Consensus 387 ~~~~P-vl~~rirka~~~g~~~I~vi~~~~------~l~~~~~~------l--~~~~e~l~~~~~g~~~~~~~l~~a~~~ 451 (700)
.++.| |+.--||+|+++.+.-|+.||.-. +..|.... + ..+.+. .....+.|++|++|
T Consensus 131 Ae~LP~v~DeAiR~Ay~~~GvAVv~IP~dfG~~eI~~~~y~~as~~~~~~~~P~~~~~~-------v~~~~~~l~aA~~P 203 (577)
T TIGR02720 131 AESLPKVIDEAIRAAYAHNGVAVVTIPVDFGWQEIPDNDYYAASVSEKLVLLPAPDEEE-------VKKAVKLLKAAKRP 203 (577)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHHHHHHHCCCC
T ss_conf 21067057899999985079889985787784315543443344541114588878889-------99999999841897
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH----H----HCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCC
Q ss_conf 023544332104746989898999887----4----10585334754246753104521017765865236888860167
Q gi|254780859|r 452 LIIVGQGALRASDNVEVMANIAKLVID----V----GGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTD 523 (700)
Q Consensus 452 ~ii~G~g~~~~~~g~~~~~al~~l~~~----~----G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~ 523 (700)
+|.+|.|.- ++.+-+.+++.-... | |-+... +--+.|.+++++ ...+.++.-..|
T Consensus 204 ~iY~G~Ga~---~A~e~l~~lS~~lk~Pli~t~~akgi~~D~---Y~a~lGSA~RvA-----------~KpA~E~~~~aD 266 (577)
T TIGR02720 204 VIYVGVGAR---KAGEELKALSEKLKVPLISTGLAKGIIEDD---YPAYLGSAYRVA-----------SKPANEVLFEAD 266 (577)
T ss_pred EEEEEECCC---HHHHHHHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCCCHHHH-----------CCHHHHHEEECC
T ss_conf 699830752---478999999986398848613653011256---874446512222-----------160321001027
Q ss_pred EEEECCCCH-H----HCCCCCCEEEHHH
Q ss_conf 599807642-2----0166543450221
Q gi|254780859|r 524 IVFLLGADE-L----DFSDKQALTVYIG 546 (700)
Q Consensus 524 ~l~~~g~d~-l----~~~~~~~fvV~~d 546 (700)
+++.+|.|- . ...++....|.+|
T Consensus 267 ~vlfvG~nypFA~v~~~fk~~~~FiQid 294 (577)
T TIGR02720 267 LVLFVGNNYPFAEVLKAFKNTKYFIQID 294 (577)
T ss_pred EEEEECCCCCHHHHHHHHHCCEEEEEEE
T ss_conf 8899437864899998651626789888
No 198
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein; InterPro: IPR004489 Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (1.3.99.1 from EC). In Escherichia coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This group also includes a region of the B subunit of a cytosolic archaeal fumarate reductase.; GO: 0016491 oxidoreductase activity, 0006099 tricarboxylic acid cycle, 0006118 electron transport.
Probab=90.07 E-value=0.18 Score=29.68 Aligned_cols=185 Identities=17% Similarity=0.246 Sum_probs=90.3
Q ss_pred ECCEEEEECCCC-CHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CCCCC--CCCCCE
Q ss_conf 999999968887-588999986895-4612127999645600047999717988702002656645-66376--668537
Q gi|254780859|r 9 VDGIEIEVPSGF-TILQACELAGAE-IPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSD-LRAGP--NGELPE 83 (700)
Q Consensus 9 Idg~~v~v~~g~-til~a~~~~gi~-IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~-gm~~~--~~~g~~ 83 (700)
...-++.+.++. ++|++.....-. -|.+-| ..---.|-|.-|.+.+.+ ++ ..+|.+++.+ +.-.. +.++..
T Consensus 15 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~c~~~~cg~c~~~~~~-~~--~l~c~~~~~~~~~~~~~~~~~~~~ 90 (236)
T TIGR00384 15 LESYELPADEGTLTLLDALGYIKDELDPSLAF-RKSCRNGICGSCALKVNG-KP--RLACKTKVEDLGGPLKESNEEGTG 90 (236)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHCCCCCEECCC-CC--CHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 22102333343257899999875420321134-544321001200000067-42--012232233310100010002565
Q ss_pred EEECCHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCHHCCCHHHCC
Q ss_conf 9819989--99999999999982789988778887888379989983898674777567--7878885602100643290
Q gi|254780859|r 84 VFTKSSM--VKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKR--AVEDKSIGPLVKTVMNRCI 159 (700)
Q Consensus 84 v~t~s~~--v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~--~~~~~~~~p~i~~d~~rCI 159 (700)
|.+-.|. ..-.+..+.++--.- +-.+...-|-.... +....+ ...... .-.-......||
T Consensus 91 ~~~~~p~~~~~~~~dl~~~~~~~~--------------~~~~~~~py~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~c~ 154 (236)
T TIGR00384 91 VLTIEPLGNLPVIKDLVVDLGPFY--------------EKLEAVKPYLIRKG-RPEPGGKELLQTPE-EREKLDGLSGCI 154 (236)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHCCC-CCCCCHHHHHHCHH-HHHHHHHHHHHH
T ss_conf 268620677521455553136788--------------87765543442257-77320023430457-888766666677
Q ss_pred CCCHHHHHHHHCCCCCC-------EEEECC--------CCCCEE--EE-CCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 10023645432068740-------033306--------664126--62-05875556546622201212101
Q gi|254780859|r 160 HCTRCVRFITEVAGVSE-------LGLVGR--------GENAEI--TT-YLEQSLTSEMQGNIIDLCPVGAL 213 (700)
Q Consensus 160 ~C~RCVR~c~Ev~g~~~-------lg~~~R--------G~~~~i--~~-~~~~~~~~e~~Gncvd~CPvGAL 213 (700)
.|+-|...|....-... +....| |..... .. .....+.|.+|++|.++||.+.-
T Consensus 155 ~c~~c~~~cp~~~~~~~~~~gp~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~c~~~~~c~~~cp~~~~ 226 (236)
T TIGR00384 155 LCGACYSSCPAFWWNPDKFLGPAALTKAYRFLLDSRDGGTKDRLELLNNDSNGVWGCTTCGKCSEVCPKGLD 226 (236)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 775554320200035310124689999988740443310245676530121220012334444442122132
No 199
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=90.02 E-value=0.47 Score=26.62 Aligned_cols=36 Identities=22% Similarity=0.128 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECC
Q ss_conf 1857999738532257310257789997599706616
Q gi|254780859|r 375 EADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVI 411 (700)
Q Consensus 375 ~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi 411 (700)
+-++++++|.||...+|-. .++++|.++-.+.|+.+
T Consensus 386 ~ik~l~~~g~Np~~s~pd~-~~~~~al~kldfvVv~D 421 (567)
T cd02765 386 QIKFMYFMGSNFLGNQPDR-DRWLKVMKNLDFIVVVD 421 (567)
T ss_pred CEEEEEEECCCHHHCCCCH-HHHHHHHHCCCCEEEEE
T ss_conf 1447999778858637068-99999986148289850
No 200
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.73 E-value=1.5 Score=22.92 Aligned_cols=111 Identities=12% Similarity=0.028 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHHHHC
Q ss_conf 566888752013445314785043232-355547889863687724202334446643----4012546778-7877401
Q gi|254780859|r 302 YALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQGIEE 375 (700)
Q Consensus 302 eAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~die~ 375 (700)
+.++.+++.|.+.+.-. .++|..... ...-.+++|++.+|.+-+.+......++.. .|..+...+. .-.-+++
T Consensus 194 ~~i~~a~~~L~~AkrPv-Il~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~l~~ 272 (574)
T PRK06466 194 GQIRKAVEMLLAAKRPV-IYSGGGVILGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHH 272 (574)
T ss_pred HHHHHHHHHHHHCCCCE-EEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 99999999997179988-99788625120899999999986888102321467666788643687777788999999860
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHH
Q ss_conf 857999738532257310257789997599706616850122
Q gi|254780859|r 376 ADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGEL 417 (700)
Q Consensus 376 ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l 417 (700)
||+||++|+.+.+... +. ......+++.|.++.+...+
T Consensus 273 aDlvl~lG~rl~~~~t--~~--~~~~~~~~~iI~Id~dp~~~ 310 (574)
T PRK06466 273 ADVILAVGARFDDRVT--NG--PAKFCPNAKIIHIDIDPASI 310 (574)
T ss_pred CCEEEECCCCCCCCCC--CC--HHHCCCCCCEEEEECCHHHH
T ss_conf 7965434766775345--77--31249878558970898996
No 201
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=89.68 E-value=0.099 Score=31.52 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEEEEECCCCCC---CCCEEEE
Q ss_conf 5565466222012121012233-233344430235220121168---8643667
Q gi|254780859|r 196 LTSEMQGNIIDLCPVGALTSKP-FAFTGRSWELTKTDSIDVMDA---LGSAIRI 245 (700)
Q Consensus 196 ~~~e~~Gncvd~CPvGALt~k~-~~~~~Rpwel~~~~SvC~~C~---~GC~i~v 245 (700)
-.|..||.|+.+||.|||+-.. ..-..|.|++.. .-|.+|+ --|...+
T Consensus 38 ekCIgC~~C~~~CP~~AI~~~~d~~~~~r~~~id~--grCIfCG~C~EvCPt~A 89 (181)
T PRK08222 38 SQCIACGACACACPANALTIQTDDQQNSRTWQLYL--GRCIYCGRCEEVCPTRA 89 (181)
T ss_pred HHCCCHHHHHHHCCCCCCEEEECCCCCCEEEEECC--CCCCCCCHHHHHCCCCC
T ss_conf 01845328987586026687622678856888526--61678772441488142
No 202
>PRK02651 photosystem I subunit VII; Provisional
Probab=89.63 E-value=0.088 Score=31.88 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.3
Q ss_pred CCCCCCCEEECCCCCCCCCC
Q ss_conf 56546622201212101223
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k 216 (700)
.|.-||+||++||+|+|---
T Consensus 10 ~CIgC~qCV~~CPt~VleMv 29 (81)
T PRK02651 10 TCIGCTQCVRACPLDVLEMV 29 (81)
T ss_pred CCCCHHHHHHHCCCCCEEEC
T ss_conf 13674566865887603642
No 203
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=89.63 E-value=0.3 Score=28.07 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=25.7
Q ss_pred EECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 3306664126620587555654662220121210122332
Q gi|254780859|r 179 LVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPF 218 (700)
Q Consensus 179 ~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~ 218 (700)
---||.+... .+.+..-.|..||.|..+||++|+.-...
T Consensus 42 ~r~RG~~~l~-~d~~g~ekCi~C~lC~~~CP~~~I~i~~~ 80 (172)
T PRK05888 42 PRFRGRHALR-RYPNGEERCIACKLCEAICPANAITIEAA 80 (172)
T ss_pred CCCCCEEEEE-ECCCCCEECCCCCCHHHHCCCCCCEEEEE
T ss_conf 5523427764-06888740357765565588776789875
No 204
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=89.48 E-value=0.1 Score=31.42 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=35.2
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 06432901002364543206874003330666412662058755565466222012121012
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
.|-++||-|.-|.-||-|-+ +...+-|.+..|.- --|.=||-|+++||+-|+.
T Consensus 32 ~d~~kCi~C~~C~~yCPe~~----i~~~~~~~~~~idY-----dyCKGCGICa~vCP~kaI~ 84 (91)
T COG1144 32 VDEDKCINCKLCWLYCPEPA----ILEEEGGYKVRIDY-----DYCKGCGICANVCPVKAIE 84 (91)
T ss_pred ECCHHCCCCCEEEEECCCHH----EEECCCCCCCEEEC-----CCCCCCEECHHHCCHHHEE
T ss_conf 74100026863589879400----56015873120475-----6046766403038862637
No 205
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=89.27 E-value=0.13 Score=30.72 Aligned_cols=49 Identities=10% Similarity=-0.079 Sum_probs=28.9
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCC----CCCCEEEEEECC---CCCCCCCEEEEE
Q ss_conf 6546622201212101223323334----443023522012---116886436675
Q gi|254780859|r 198 SEMQGNIIDLCPVGALTSKPFAFTG----RSWELTKTDSID---VMDALGSAIRID 246 (700)
Q Consensus 198 ~e~~Gncvd~CPvGALt~k~~~~~~----Rpwel~~~~SvC---~~C~~GC~i~v~ 246 (700)
|.-|+-|..+||++|++--+..-.. |++--+---.-| .+|---|...+-
T Consensus 57 CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 57 CIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred CCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHHHH
T ss_conf 82616888639847318997656788842133431433512611751423966562
No 206
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=89.17 E-value=1.7 Score=22.64 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-C----
Q ss_conf 145668887520134453147850432323-55547889863687724202334446643----4012546778-7----
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLSSVE-EIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-T---- 369 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~t~E-e~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~---- 369 (700)
=+++++.+++.|.+.+.-. .++|...... ..-.+.+|++.+|.+-+.+......++.. .|...+..+. +
T Consensus 202 ~~~~l~~a~~~L~~AkrPv-ii~G~gv~~~~a~~~l~~lae~~g~Pv~tt~~gkg~~~e~hpl~~G~~g~~~~~~~~~~~ 280 (581)
T PRK06112 202 APQRLAQAASLLAQARRPV-VVAGGGVHISGASDALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSAMGPRSPGRH 280 (581)
T ss_pred CHHHHHHHHHHHHCCCCCE-EEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCCHHHHH
T ss_conf 9999999999997289929-998977020448999999999859888961223786688886546432104575205799
Q ss_pred H-HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 8-77401857999738532257310257789997599706616850
Q gi|254780859|r 370 I-QGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414 (700)
Q Consensus 370 i-~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~ 414 (700)
. +-++++|++|++|+...+...-.+. ..-.+.+.|.++.+.
T Consensus 281 ~~~~i~~aDlvl~iG~~~~~~~t~~~~----~~~~~~~~I~Id~d~ 322 (581)
T PRK06112 281 FRDLVREADVVLLVGTRTNQNGTDSWS----LYPEQAQYIHIDVDG 322 (581)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCC----CCCCCCEEEEECCCH
T ss_conf 999873588799964535767787533----368877178843898
No 207
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=89.15 E-value=1.7 Score=22.63 Aligned_cols=109 Identities=11% Similarity=0.039 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCC-CCHHHHH
Q ss_conf 4566888752013445314785043232-355547889863687724202334446643----401254677-8787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFN-PTIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~-~~i~die 374 (700)
.+.++.+++.|++.+.-. .++|..... +..-.+++|+..+|.+-+.+......++.. .|......+ ....-++
T Consensus 218 ~~~i~~a~~~L~~AkrPv-Il~G~G~~~~~a~~~l~~Lae~l~iPV~tt~~gkg~~pe~hpl~~G~~G~~g~~~a~~~l~ 296 (612)
T PRK07789 218 GRQIREAAKLIAAARRPV-LYVGGGVIRAEASEELRELAELTGIPVVTTLMARGAFPDSHPQNLGMPGMHGTVAAVAALQ 296 (612)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHC
T ss_conf 999999999997279968-9989771346589999999996199789830576889988801047777778889997650
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 1857999738532257310257789997599706616850
Q gi|254780859|r 375 EADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414 (700)
Q Consensus 375 ~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~ 414 (700)
+||+||++|+...+..+-... ....+.+.|.++-+.
T Consensus 297 ~aDlvL~iG~rl~~~~tg~~~----~~~p~~kvI~Id~D~ 332 (612)
T PRK07789 297 RSDLLIALGARFDDRVTGKLD----SFAPDAKVIHADIDP 332 (612)
T ss_pred CCCEEEEECCCCCCCCCCCCC----CCCCCCEEEEEECCH
T ss_conf 588688862556755568734----359987389972998
No 208
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.63 E-value=1.8 Score=22.39 Aligned_cols=112 Identities=15% Similarity=0.012 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH--CCCCCCCCC---HHHH
Q ss_conf 145668887520134453147850432-3235554788986368772420233444664340--125467787---8774
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLS-SVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG--RASYIFNPT---IQGI 373 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~-t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~--~~~~~~~~~---i~di 373 (700)
.++.++.+++.|...+.-. .++|... ..+..-.+.+|++.+|.+-+.+......++...- .+......+ -.-+
T Consensus 192 ~~~~i~~a~~~L~~A~rPv-ii~G~g~~~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp~~~G~~G~~~~~~a~~~l 270 (574)
T PRK06882 192 HKGQIKKALKALLVAKKPV-LFIGGGVITAECSEQLTQFAQRLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAM 270 (574)
T ss_pred CHHHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 8999999999998379988-997874344248999999998609871312035777777776567877777888999743
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHH
Q ss_conf 0185799973853225731025778999759970661685012
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGE 416 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~ 416 (700)
++||+||++|+...+...--.. ......+.|.++.+...
T Consensus 271 ~~aDlvl~lG~rl~~~~t~~~~----~~~p~~kiI~id~dp~~ 309 (574)
T PRK06882 271 HESDLILGIGVRFDDRTTNNLA----KYCPNAKVIHIDIDPTS 309 (574)
T ss_pred CCCCEEEEECCCCCCCCCCCCC----CCCCCCCEEEEECCHHH
T ss_conf 3677399816865654467700----03866735997479899
No 209
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=88.43 E-value=0.83 Score=24.84 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=38.5
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCCCCCCCC
Q ss_conf 0499999999996888758899998689546121279996456000479997179-8870200265664566
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGI-ASKPQASCAMNVSDLR 74 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~-~~k~~~sC~t~v~~gm 74 (700)
|++|+|||++.+++++.||-+..+..++.. +=|.|++.+. -||- .=-.|.+++|-
T Consensus 3 ~m~I~vNge~~~v~~~~tl~~Ll~~l~l~~---------------~giAvaiN~~iVPRs-~W~~~~l~~gD 58 (69)
T PRK06083 3 TITISINDQSYQVPTSSSLAQIIEQLSLPE---------------LGCVFAINNQVVPRS-EWQSTVLSEGD 58 (69)
T ss_pred EEEEEECCEEEECCCCCCHHHHHHHHCCCC---------------CCEEEEECCEEECHH-HCCCCCCCCCC
T ss_conf 789999998877389983999999738998---------------868999778384356-71604589999
No 210
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=88.35 E-value=1.9 Score=22.26 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC-HHHHH
Q ss_conf 45668887520134453147850432-32355547889863687724202334446643----40125467787-87740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLS-SVEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT-IQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~-t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~-i~die 374 (700)
+++++.+++.|.+.+.-. .++|... ..+..-.+.+|++.+|.+-+.+-.....++.. .|......+.. ..-++
T Consensus 185 ~~~i~~~~~~L~~AkrPv-ii~G~g~~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~~e~hp~~~G~~g~~~~~~~~~~l~ 263 (553)
T PRK08199 185 AADLARLAELLAAAERPL-VILGGSGWTPAAVADLRAFAERWGLPVATAFRRQDLFDNRHPNYAGDLGLGINPALAARIR 263 (553)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999998478988-9937873554799999999998598889514567888888854366676431799999998
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 1857999738532257
Q gi|254780859|r 375 EADAMLIIGSNPRLEA 390 (700)
Q Consensus 375 ~ad~illiG~Np~~~~ 390 (700)
++|+||++|+.+.+-.
T Consensus 264 ~aDlvl~lG~~l~~~~ 279 (553)
T PRK08199 264 EADLVLAVGTRLGEAT 279 (553)
T ss_pred HCCEEEEECCCCCCCC
T ss_conf 4897999826247666
No 211
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=88.25 E-value=0.12 Score=30.83 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=26.7
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCC--CCCCCCEEEEEE---CCCCCCCCCE
Q ss_conf 565466222012121012233233--344430235220---1211688643
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSKPFAF--TGRSWELTKTDS---IDVMDALGSA 242 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k~~~~--~~Rpwel~~~~S---vC~~C~~GC~ 242 (700)
.|.-||.|+++||+|||.-+.-.. .++.-+.. .+. -|..|...|.
T Consensus 17 ~C~gC~~Cv~~CP~~~l~m~~d~~~~~G~~~~vv-~pe~CIgCG~Ce~~CP 66 (103)
T PRK09626 17 RCKACDICVSYCPAGVLAMRIEPHAVLGKMIEVV-YPESCIGCRECELHCP 66 (103)
T ss_pred CCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCCC-CHHHCCCCCHHHHHCC
T ss_conf 0777128888777656432456443456542216-8335838275755488
No 212
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011898 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.; GO: 0016625 oxidoreductase activity acting on the aldehyde or oxo group of donors iron-sulfur protein as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=88.03 E-value=0.16 Score=30.00 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=36.2
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCC--CCC
Q ss_conf 06432901002364543206874003330666412662058755565466222012121--012
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVG--ALT 214 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvG--ALt 214 (700)
+|-+|||.|.-|.=||=|-+ +|...+-|+...+..+.| -|-=||=|+++|||= ||.
T Consensus 22 ~~~~KC~~C~~C~~YCPe~~---~I~~~e~~~~~~~~iDYd---YCKGCGiCA~vCP~kPkAI~ 79 (84)
T TIGR02179 22 VDKEKCIKCKLCWLYCPEGA---AIQEDEGGDEKKVEIDYD---YCKGCGICANVCPVKPKAIE 79 (84)
T ss_pred ECCCCCCCCCCEEEECCCCC---EEECCCCCEEEEEEECCC---CCCCCEEECCCCCCCCCEEE
T ss_conf 60345356640388769974---776158932677676487---37875150274865885024
No 213
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=87.95 E-value=0.3 Score=28.08 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=28.0
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCE-EEEEECCCCCCCCCEEE
Q ss_conf 5654662220121210122332333444302-35220121168864366
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSKPFAFTGRSWEL-TKTDSIDVMDALGSAIR 244 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel-~~~~SvC~~C~~GC~i~ 244 (700)
.|..||.|.++|+-||+.- +..+.|.+ ...=+-|..|+.-|+..
T Consensus 70 ~C~~CG~C~~vC~f~Ai~~----~~~~~~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 70 KCIRCGKCAEVCRFGAIVV----LPGGKPVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred HCCCCCCHHHHCCCCEEEE----CCCCCEECCCCCCCCCCCCEEECCCC
T ss_conf 7430172687678880897----37886002802026766333247876
No 214
>pfam00037 Fer4 4Fe-4S binding domain. Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.
Probab=87.91 E-value=0.14 Score=30.39 Aligned_cols=18 Identities=39% Similarity=0.763 Sum_probs=12.1
Q ss_pred CCCCCCCEEECCCCCCCC
Q ss_conf 565466222012121012
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt 214 (700)
.|..||.|+++||++|+.
T Consensus 7 ~Ci~Cg~C~~~CP~~ai~ 24 (26)
T pfam00037 7 KCIGCGACVEVCPVGAIT 24 (26)
T ss_pred HHCCCHHHHHHCCCCCCC
T ss_conf 623421345308854220
No 215
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=87.90 E-value=0.14 Score=30.52 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.2
Q ss_pred CCCCCCCEEECCCCCCCCCC
Q ss_conf 56546622201212101223
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k 216 (700)
.|.-||+||++||+++|.--
T Consensus 9 ~CIgC~~CvrvCPt~vieMV 28 (80)
T TIGR03048 9 TCIGCTQCVRACPTDVLEMV 28 (80)
T ss_pred CCCCCHHHHHHCCCCCEEEC
T ss_conf 06680466865884514522
No 216
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=87.85 E-value=0.35 Score=27.55 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=50.3
Q ss_pred HHCCCCCHHHH-HHHHCCCCCCEEEECC--CCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 32901002364-5432068740033306--66412662058755565466222012121012233233344430235220
Q gi|254780859|r 156 NRCIHCTRCVR-FITEVAGVSELGLVGR--GENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDS 232 (700)
Q Consensus 156 ~rCI~C~RCVR-~c~Ev~g~~~lg~~~R--G~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~S 232 (700)
|+|.-.+.=|. --.++.|..+-....+ +....-..+.+. -.|.-||.|+++||+.|++...- ..++
T Consensus 71 n~C~pGG~~~a~~IA~ilGve~~~~~~~~~~~~~~~~a~i~~-~~CiGcg~Cv~~CP~dAI~~~~~----------~~~~ 139 (184)
T PRK05113 71 NKCPPGGEATMLKLAELLGVEPQPLDGEQAAEPVRKVAFIDE-DNCIGCTKCIQACPVDAIVGATK----------AMHT 139 (184)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECC-CCCCCCCHHHHHCCCCCEECCCC----------CCEE
T ss_conf 869998499999999997889644454334556762588865-24888681120199462776899----------8869
Q ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCE
Q ss_conf 12116886436675159999885247888777741
Q gi|254780859|r 233 IDVMDALGSAIRIDARGCEVMRILPRINESINEEW 267 (700)
Q Consensus 233 vC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~ 267 (700)
|...=-+||+.=+.+=--.++.+.|.....-|..|
T Consensus 140 V~~d~C~gCg~Cv~~CP~~~I~lvP~~~t~~~w~w 174 (184)
T PRK05113 140 VISDLCTGCDLCVAPCPTDCIEMIPVAETPDNWKW 174 (184)
T ss_pred ECHHHCCCCCHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 78646808352546558673688768888777748
No 217
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=87.74 E-value=0.26 Score=28.44 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=56.0
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEE-EEC--------CC------CCCCCCCC--CCEEECCCCCCC
Q ss_conf 10064329010023645432068740033306664126-620--------58------75556546--622201212101
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEI-TTY--------LE------QSLTSEMQ--GNIIDLCPVGAL 213 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i-~~~--------~~------~~~~~e~~--Gncvd~CPvGAL 213 (700)
+.+|++||+=|-=|==+|.+=. +-++|..-|-.-..- |.+ .. -++.|..| =-||..|||||+
T Consensus 4 Fy~D~~~C~GCKtCQ~ACKD~~-dLevG~~fRRVyey~GG~w~~~G~~a~~~~vf~Yy~SiSCNHC~dP~Cv~~CPTGAm 82 (162)
T TIGR02951 4 FYIDSTRCSGCKTCQIACKDKN-DLEVGVLFRRVYEYEGGSWTEEGEGAFRPNVFAYYISISCNHCADPVCVKNCPTGAM 82 (162)
T ss_pred CEEECCCCCCCCEEEEEEECCC-CCCCCCCCCEEEEEECCEEEECCCCCCCCCCEEEEEEEEEECCCCCCEECCCCCCCC
T ss_conf 1343455575521122321178-763466522378832890674488873678658985100105873861011788631
Q ss_pred CCCCCCCCCCCCC-EEEEEE----CCCCCCCCCEEEE---ECCCCEEEE
Q ss_conf 2233233344430-235220----1211688643667---515999988
Q gi|254780859|r 214 TSKPFAFTGRSWE-LTKTDS----IDVMDALGSAIRI---DARGCEVMR 254 (700)
Q Consensus 214 t~k~~~~~~Rpwe-l~~~~S----vC~~C~~GC~i~v---~v~~g~i~r 254 (700)
- | |+-+ |..|+. =|.+|..-|+--+ ..+.|++-|
T Consensus 83 ~-K------R~~dG~V~Vd~~~CiGC~yC~waCPYgAPQy~~~~G~m~K 124 (162)
T TIGR02951 83 Y-K------REEDGLVLVDQDKCIGCRYCVWACPYGAPQYDEQQGVMSK 124 (162)
T ss_pred C-C------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 1-1------1689637870886534344564587887673334774442
No 218
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=87.55 E-value=2.1 Score=21.93 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCCH-HHHH
Q ss_conf 456688875201344531478504323-2355547889863687724202334446643----401254677878-7740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSS-VEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPTI-QGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t-~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~i-~die 374 (700)
+++++.+++.|++.+.-. .++|.... ....-.+.+|++.+|.+-+.+......++.. .|......+... .-++
T Consensus 197 ~~~i~~a~~~L~~AkrPv-ii~G~g~~~~~a~~~l~~lae~l~iPv~tt~~gkg~~~~~hpl~lG~~G~~~~~~~~~~l~ 275 (566)
T PRK07282 197 DMQIKKILKQLSKAKKPV-ILAGGGINYAEAAKELVEFAERYQIPVVTSLLGQGTIATSHPLFLGMGGMHGSYAANIAMT 275 (566)
T ss_pred HHHHHHHHHHHHCCCCCE-EEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 999999999986479958-9988883724599999999998699899504668877666762025566778889987541
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHH
Q ss_conf 185799973853225731025778999759970661685012
Q gi|254780859|r 375 EADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGE 416 (700)
Q Consensus 375 ~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~ 416 (700)
+||+||.+|+.+.+... +.. ....++.+.|.++-+..+
T Consensus 276 ~aDlil~lG~rl~~~~~--~~~--~~~~~~~~ii~Id~d~~~ 313 (566)
T PRK07282 276 EADFMINIGSRFDDRLT--GNP--KTFAKNAKVAHIDIDPAE 313 (566)
T ss_pred CCCEEEEECCCCCCCCC--CCC--CCCCCCCCEEEEECCHHH
T ss_conf 58769997776776544--787--434566534898489899
No 219
>PRK05858 hypothetical protein; Provisional
Probab=87.44 E-value=1.9 Score=22.29 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEE
Q ss_conf 456688875201344531478504323-2355547889863687724202334446643401254677878774018579
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSS-VEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAM 379 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t-~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~i 379 (700)
.++++.+++.|++.+.-. .++|.... .+..-.+.+|+..+|.+-+.+......++...-. +.....-.-+.++|+|
T Consensus 192 ~~~i~~a~~~L~~AkrPv-ii~G~gv~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~p~~hpl--~~~~~~~~~l~~aDli 268 (543)
T PRK05858 192 GDALDRAAGLLSTAQRPV-IMAGTNVWWGHAEAALLRLAEELHIPVLMNGMARGVVPADHPL--AFSRARSKALGEADVA 268 (543)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCH--HHHHHHHHHHCCCCEE
T ss_conf 999999999998279978-9968642233339999999998699778755557768887704--5657899885569989
Q ss_pred EEECCCCC
Q ss_conf 99738532
Q gi|254780859|r 380 LIIGSNPR 387 (700)
Q Consensus 380 lliG~Np~ 387 (700)
|++|+...
T Consensus 269 l~iG~~l~ 276 (543)
T PRK05858 269 LVVGVPMD 276 (543)
T ss_pred EEECCCCC
T ss_conf 99657654
No 220
>TIGR00276 TIGR00276 iron-sulfur cluster binding protein, putative; InterPro: IPR004453 This is a family of putative iron-sulphur cluster binding proteins. These proteins contain the 4Fe-4S ferredoxins iron-sulphur binding domain..
Probab=87.31 E-value=0.27 Score=28.39 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=19.7
Q ss_pred CCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5577047862024720882088674204432885557407999999999
Q gi|254780859|r 556 ADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALAD 604 (700)
Q Consensus 556 ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~ 604 (700)
.|+=.-+++|..|-|-+|.. ...-+-++..+|..+-|..+++
T Consensus 228 Cd~Cq~vCPwnq~~~~~T~~-------~~f~p~~~~~~p~l~~L~aise 269 (297)
T TIGR00276 228 CDICQEVCPWNQKLGQKTKE-------EDFEPLKEKLEPELKELLAISE 269 (297)
T ss_pred CCCCCCCCCCCCCCCCCCCC-------HHCCCCHHHHHHHHHHHHHHHH
T ss_conf 47542206564664555650-------1036672231044578887547
No 221
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=87.25 E-value=1.9 Score=22.24 Aligned_cols=87 Identities=9% Similarity=0.123 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCC
Q ss_conf 41456688875201344531478504323-23555478898636877242023344466434012546778787740185
Q gi|254780859|r 299 SWDYALKAIKSAVLSSDVKLGAVVGDLSS-VEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEAD 377 (700)
Q Consensus 299 SWdeAl~~ia~~L~~~~~~~g~~~g~~~t-~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad 377 (700)
.-+++++.+++.|++.+.-+ .++|.... .+..-.+.+|++.+|.+-+.+......++....... ....-.-+++||
T Consensus 191 p~~~~i~~a~~~L~~AkrPv-Ii~G~g~~~~~a~~~l~~lae~~~iPv~tt~~gkg~~~~~hp~~~--g~~~~~~l~~aD 267 (554)
T TIGR03254 191 PSPDSVDRAVELLKDAKRPL-ILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSA--AAARSFALAEAD 267 (554)
T ss_pred CCHHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCH--HHHHHHHHCCCC
T ss_conf 99999999999998279968-996886214448999999999729838962454774788887435--689987746587
Q ss_pred EEEEECCCCCC
Q ss_conf 79997385322
Q gi|254780859|r 378 AMLIIGSNPRL 388 (700)
Q Consensus 378 ~illiG~Np~~ 388 (700)
+||.+|+.+.+
T Consensus 268 lvl~lG~~l~~ 278 (554)
T TIGR03254 268 VVMLVGARLNW 278 (554)
T ss_pred EEEEECCCCCC
T ss_conf 99993365552
No 222
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=87.20 E-value=0.17 Score=29.85 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=4.9
Q ss_pred CCCCCCEEECCCCC
Q ss_conf 65466222012121
Q gi|254780859|r 198 SEMQGNIIDLCPVG 211 (700)
Q Consensus 198 ~e~~Gncvd~CPvG 211 (700)
|-.||.|||.||--
T Consensus 247 CI~C~~CidaCd~~ 260 (386)
T COG0348 247 CIGCGRCIDACDDD 260 (386)
T ss_pred CCCHHHHHHHCCHH
T ss_conf 62067656428765
No 223
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.06 E-value=0.5 Score=26.46 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=23.4
Q ss_pred EECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHH
Q ss_conf 97385322573102577899975997066168501223
Q gi|254780859|r 381 IIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELR 418 (700)
Q Consensus 381 liG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~ 418 (700)
+.|.||..+.|- ..++|+|..+-.++|+++.-..+.+
T Consensus 338 ~~G~NP~~s~p~-~~~~~~al~kld~lVv~D~f~teta 374 (649)
T cd02752 338 LGGQNPNSSFPN-ANKVRRALDKLDWLVVIDPFPTETA 374 (649)
T ss_pred CCCCCHHCCCCC-HHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 335174305858-8999999877996999589835679
No 224
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=0.82 Score=24.87 Aligned_cols=31 Identities=32% Similarity=0.511 Sum_probs=28.2
Q ss_pred CEEEEECCEEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 0499999999996888758899998689546
Q gi|254780859|r 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIP 34 (700)
Q Consensus 4 mv~~~Idg~~v~v~~g~til~a~~~~gi~IP 34 (700)
|.++.+||++|++|.|.|+=+|.+..|...|
T Consensus 1 ~m~V~VnGeev~lp~gsTlrdalea~ga~y~ 31 (512)
T COG4070 1 EMSVEVNGEEVTLPAGSTLRDALEASGASYI 31 (512)
T ss_pred CEEEEECCEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 9089988968047785218889975178413
No 225
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=86.47 E-value=1.6 Score=22.73 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEE
Q ss_conf 4566888752013445314785043232355-547889863687724202334446643401254677878774018579
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEI-YALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAM 379 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~-y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~i 379 (700)
+++++.+++.|++.+.-. .++|...-.... -.+..|++.+|.+-+.+......++.......+ ...-.-++++|+|
T Consensus 203 ~~~i~~a~~~L~~AkrPv-Ii~G~G~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~p~~hpl~~G--~~~~~~l~~aDlv 279 (572)
T PRK09259 203 PDAVDRAIDLLKKAKRPL-IILGKGAAYAQADEQIREFVESTGIPFLPMSMAKGLLPDTHPQSAA--AARSFALANADVV 279 (572)
T ss_pred HHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHH--HHHHHHHHCCCEE
T ss_conf 999999999997279809-9988781455489999999997399767534356768886741146--8999988319889
Q ss_pred EEECCCCCC
Q ss_conf 997385322
Q gi|254780859|r 380 LIIGSNPRL 388 (700)
Q Consensus 380 lliG~Np~~ 388 (700)
|++|+.+.+
T Consensus 280 l~iG~~l~~ 288 (572)
T PRK09259 280 LLVGARLNW 288 (572)
T ss_pred EEECCCCCC
T ss_conf 998267764
No 226
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=86.33 E-value=2.4 Score=21.47 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHHHH
Q ss_conf 4566888752013445314785043232355-547889863687724202334446643----4012546778-787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEI-YALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~-y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~die 374 (700)
+++++.+++.|.+.+.-. .++|........ -.+.+|+..+|.+-+.+......++.. .|.-.+..+. ...-++
T Consensus 187 ~~~i~~a~~lL~~A~rPv-Ii~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~~kg~~~~~hpl~~G~~G~~g~~~a~~~l~ 265 (589)
T PRK07525 187 EQSLAEAAELLSEAKFPV-ILSGAGVVLSGAIEECKALAERLDAPVCCGYLHNDAFPGSHPLWVGPLGYNGSKAAMELIA 265 (589)
T ss_pred HHHHHHHHHHHHCCCCCE-EEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999997289978-9989871421189999999998497867530257875677765567666544699999984
Q ss_pred CCCEEEEECCCCC
Q ss_conf 1857999738532
Q gi|254780859|r 375 EADAMLIIGSNPR 387 (700)
Q Consensus 375 ~ad~illiG~Np~ 387 (700)
+||+||++|+.+.
T Consensus 266 ~aDlvl~lG~rl~ 278 (589)
T PRK07525 266 QADVVLALGTRLN 278 (589)
T ss_pred CCCCEEEEECCCC
T ss_conf 2583577403346
No 227
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=86.24 E-value=2.5 Score=21.44 Aligned_cols=110 Identities=12% Similarity=0.018 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCC-CCHHHHH
Q ss_conf 45668887520134453147850432-32355547889863687724202334446643----401254677-8787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLS-SVEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFN-PTIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~-t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~-~~i~die 374 (700)
+++++.+++.|.+.+.-. .++|... ..+..-.+.+|++.+|.+-+.+-.....++.. .|....... ..-.-++
T Consensus 198 ~~~i~~a~~~L~~A~rPv-iv~G~g~~~~~a~~~~~~lae~l~~Pv~tt~~~kg~~p~~hpl~~G~~g~~~~~~~~~~l~ 276 (564)
T PRK08155 198 EESIRDAAAMINAAKRPV-LYLGGGVINAPARVRAIELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQ 276 (564)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999998544988-9706874550199999999998698977332456777666853346543666288999984
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 18579997385322573102577899975997066168501
Q gi|254780859|r 375 EADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVG 415 (700)
Q Consensus 375 ~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~ 415 (700)
++|+||++|+.+..... +. . .....+.+.|.++.+..
T Consensus 277 ~aDlvl~lG~~l~~~~~--~~-~-~~~~p~~~ii~id~dp~ 313 (564)
T PRK08155 277 EADLLIVLGARFDDRAI--GK-T-EQFCPNAKIIHVDIDRA 313 (564)
T ss_pred CCCEEEEEEECCCCCCC--CC-H-HHCCCCCCEEEEECCHH
T ss_conf 28736887201676565--76-6-44288773699818989
No 228
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=86.17 E-value=2.5 Score=21.42 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEE
Q ss_conf 45668887520134453147850432-32355547889863687724202334446643401254677878774018579
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLS-SVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAM 379 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~-t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~i 379 (700)
+++++.+++.|++.+.-. .++|... ..+..-.+.+|++.+|.+-+.+......++.... .+.....-..+.++|++
T Consensus 207 ~~~l~~~~~~l~~AkrPv-ii~G~G~~~~~a~~~l~~lae~lg~PV~tt~~~~~~~~~~hp--l~~G~~~~~~l~~aDlv 283 (568)
T PRK08327 207 PEDIQRAAEMLAAAERPV-IITQRGGRRAEAFASLDRLAEELGIPVVEYNGEVVNIPSDHP--LFLGGDDKADLADADLV 283 (568)
T ss_pred HHHHHHHHHHHHHCCCCE-EECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC--CCCCHHHHHHHHHCCEE
T ss_conf 999999999998367974-751787335789999999987549967955765664699887--65566778787508899
Q ss_pred EEECCCCCC
Q ss_conf 997385322
Q gi|254780859|r 380 LIIGSNPRL 388 (700)
Q Consensus 380 lliG~Np~~ 388 (700)
|++|++..+
T Consensus 284 l~vG~~~~~ 292 (568)
T PRK08327 284 LVVDSEVPW 292 (568)
T ss_pred EEECCCCCC
T ss_conf 994677765
No 229
>pfam00037 Fer4 4Fe-4S binding domain. Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.
Probab=85.80 E-value=0.26 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.0
Q ss_pred HCCCHHHCCCCCHHHHHHHHCC
Q ss_conf 1006432901002364543206
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVA 172 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~ 172 (700)
+..|+++||.|++|+.+|-.-+
T Consensus 1 ~~~~~~~Ci~Cg~C~~~CP~~a 22 (26)
T pfam00037 1 VVIDEEKCIGCGACVEVCPVGA 22 (26)
T ss_pred CEECHHHHCCCHHHHHHCCCCC
T ss_conf 9637576234213453088542
No 230
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=85.77 E-value=1.2 Score=23.72 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=36.9
Q ss_pred EEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCCCCCCCC
Q ss_conf 99999999996888758899998689546121279996456000479997179-8870200265664566
Q gi|254780859|r 6 KLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGI-ASKPQASCAMNVSDLR 74 (700)
Q Consensus 6 ~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~-~~k~~~sC~t~v~~gm 74 (700)
+|+|||+..++|+|.|+-++....|.. |. ..|+|.+. -||-+ =..++.++|-
T Consensus 2 ~I~vNge~~~lp~g~tvadll~~l~~~-~~---------------~AVavN~~~VPRs~-~~~~~L~~GD 54 (65)
T PRK06944 2 DIQLNQQTLSLPDGATVADALAAYGAR-PP---------------FAVAVNGNFVARTQ-HAARALAAGD 54 (65)
T ss_pred EEEECCEEEECCCCCCHHHHHHHCCCC-CC---------------EEEEECCEEECHHH-HHHCCCCCCC
T ss_conf 899999464279999799999862868-97---------------79998479803145-3331278999
No 231
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=85.37 E-value=0.21 Score=29.19 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=16.2
Q ss_pred CCCCCCCEEECCCCCCCCCC
Q ss_conf 56546622201212101223
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k 216 (700)
.|..||.|+.+||+-+..-.
T Consensus 63 kCI~C~~C~~vCP~~~i~Vd 82 (173)
T CHL00014 63 KCIACEVCVRVCPIDLPVVD 82 (173)
T ss_pred CCCCHHHHHHHCCCCCEEEC
T ss_conf 17244369865977761633
No 232
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system; InterPro: IPR011536 This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.; GO: 0009055 electron carrier activity, 0051537 2 iron 2 sulfur cluster binding, 0006118 electron transport.
Probab=85.25 E-value=0.68 Score=25.46 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=37.3
Q ss_pred ECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99999996888758899998689546121279996456000479997
Q gi|254780859|r 9 VDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEI 55 (700)
Q Consensus 9 Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVev 55 (700)
=+|.-+++.+|+|||+++..++|+|-|=|-. .-+|-.|=|=|
T Consensus 13 P~G~~~e~~~G~~il~~~~~~~ie~~hAC~~-----scACtTCH~Iv 54 (110)
T TIGR02007 13 PEGAVVEAKPGETILDVALDAGIEIEHACEK-----SCACTTCHVIV 54 (110)
T ss_pred CCCCEEECCCCCHHHHHHHHCCCEEECCCCC-----CCCCCCCEEEE
T ss_conf 8861786578846888987479625112588-----65212132787
No 233
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=84.74 E-value=0.13 Score=30.58 Aligned_cols=60 Identities=18% Similarity=0.365 Sum_probs=33.5
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCC-CCCCC---CCCCCEEECCCCCCCC
Q ss_conf 21006432901002364543206874003330666412662058-75556---5466222012121012
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLE-QSLTS---EMQGNIIDLCPVGALT 214 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~-~~~~~---e~~Gncvd~CPvGALt 214 (700)
.+..|+++||-|+-|.-.|-|+=-.+ ..|....+..... ..+.. +..=.=+..|||+||+
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF~~~-----d~G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~ 65 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVFDYD-----DEGIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIK 65 (68)
T ss_pred EEEECHHHCCCCCHHHHCCCCCEEEC-----CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 79946465005421434088536367-----98635752675201358867899999999839823468
No 234
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=84.71 E-value=0.66 Score=25.58 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=25.4
Q ss_pred HCCEEECCCC------CCCCCCEEEEECCE------EEEECCCCCCCCCCCHH-HHHHHHHH
Q ss_conf 4557704786------20247208820886------74204432885557407-99999999
Q gi|254780859|r 555 SADVILPGAA------YTEKSGLWVNTEGR------VQMGMRAIFPPGDAKED-WEIICALA 603 (700)
Q Consensus 555 ~ADVVLP~a~------~~Ek~Gtf~N~EgR------vQ~~~~av~p~geak~d-w~Il~~La 603 (700)
-||.|+.|-. ++|+.|.=+|--|+ .|...+-|..-|+++.. --|+.+++
T Consensus 778 ~aDtVI~AIGq~~d~~~le~~GIeld~~G~I~vDe~~~TS~pGVFAaGD~v~GpSTVV~AIa 839 (1032)
T PRK09853 778 HADTLITAIGEQVDTELLNAMGIPLDKNGWPDVNHNGETNLTNVFMIGDVQRGPSSIVAAIA 839 (1032)
T ss_pred ECCEEEECCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCEEECCCCCCCHHHHHHHHH
T ss_conf 88999998878998651025681188999887798998789997773076767789999999
No 235
>PRK04483 threonyl-tRNA synthetase; Validated
Probab=84.68 E-value=0.92 Score=24.53 Aligned_cols=204 Identities=16% Similarity=0.245 Sum_probs=97.7
Q ss_pred CEEEEE-CCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 049999-9999996888758899998689546121279996456000479997179887020026566456637666853
Q gi|254780859|r 4 MVKLKV-DGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELP 82 (700)
Q Consensus 4 mv~~~I-dg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~ 82 (700)
||+||. ||+..++++|+|.+|+|+..|.....= .....|+| ++ ---.+|+.++-. .
T Consensus 1 MI~ItLPDGs~ke~~~g~T~~dIA~~Is~~Lak~-------------avaa~VNG---~l-~DL~~pL~~D~~------l 57 (634)
T PRK04483 1 MITITLPDGSRREFESPVSVMQVAQSIGAGLAKA-------------TIAGQVDG---QL-VDASDLIEHDAS------L 57 (634)
T ss_pred CCEEECCCCCEEECCCCCCHHHHHHHHCHHHHHH-------------HEEEEECC---EE-EECCCCCCCCCE------E
T ss_conf 9679908998477789999999999867566666-------------18999899---99-707850689978------9
Q ss_pred EEEE-CCHHHHHHHHHHHHHHHHC-----CCCCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCC---CCCCCCCCCCCHHC
Q ss_conf 7981-9989999999999999827-----89988778887888379989983898-6747775---67787888560210
Q gi|254780859|r 83 EVFT-KSSMVKKARAGVMEFLLIN-----HPLDCPICDQGGECDLQDQAIFFGFG-SSRYSEE---KRAVEDKSIGPLVK 152 (700)
Q Consensus 83 ~v~t-~s~~v~~~r~~vle~ll~n-----HpldCp~Cd~~GeC~LQd~~~~~g~~-~~r~~~~---k~~~~~~~~~p~i~ 152 (700)
++.| +|+..++.=+--.-.+|.. .| ++ . +..|+. +.-|++. .+.+..+++ +-|.
T Consensus 58 eiiT~~d~egl~v~rHS~AHvla~Av~~l~p-~~---------k-----l~iGP~ie~GFYYDf~~~~~~t~~Dl-~~IE 121 (634)
T PRK04483 58 RIITAKDAEGVEIIRHSCAHLVGHAVKQLYP-EV---------K-----MVIGPVIAEGFYYDIYSERPFTPEDM-AAIE 121 (634)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHCC-CC---------E-----EEECCCCCCEEEEECCCCCCCCHHHH-HHHH
T ss_conf 9956999789999999999999999999779-97---------5-----88789778844573268998998899-9999
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEEC-CCCC--CEEEECCCC---CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 06432901002364543206874003330-6664--126620587---55565466222012121012233233344430
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLVG-RGEN--AEITTYLEQ---SLTSEMQGNIIDLCPVGALTSKPFAFTGRSWE 226 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~-RG~~--~~i~~~~~~---~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwe 226 (700)
-.|.+-|-=.-=. ...|+.-..++.+.. +|.. .++.-.... .++-..+|+-+|+|==.-+.+.-.. ..+.
T Consensus 122 ~~M~~iik~~~~~-~r~~~s~~eA~~~f~~~~~~yK~eli~~~~~~~~~is~Y~~g~f~DLCrGPHv~~T~~i---kafk 197 (634)
T PRK04483 122 QRMQELIAQDYDV-IKKVTPRAEVIEVFAQRGEEYKLRLIEDMSDDITAMGLYYHQEYVDMCRGPHVPNTRFL---KAFK 197 (634)
T ss_pred HHHHHHHCCCCCE-EEEEECHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCCCC---CHHE
T ss_conf 9999986077875-99980799999999876977878798644888735889973887583799988971113---1112
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCEEEEEECC
Q ss_conf 23522012116886436675159999885247
Q gi|254780859|r 227 LTKTDSIDVMDALGSAIRIDARGCEVMRILPR 258 (700)
Q Consensus 227 l~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~ 258 (700)
|.++ .|.--+-+.++-.+.||.|-
T Consensus 198 L~~v--------sgaYWrGd~~n~~LqRIYG~ 221 (634)
T PRK04483 198 LTRI--------SGAYWRGDAKNEQLQRIYGT 221 (634)
T ss_pred EEEH--------HHHEECCCCCCCCEEEEEEE
T ss_conf 3011--------02112688757102899999
No 236
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.66 E-value=0.69 Score=25.42 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHH
Q ss_conf 8579997385322573102577899975997066168501223
Q gi|254780859|r 376 ADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELR 418 (700)
Q Consensus 376 ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~ 418 (700)
-+.++++|.||..+.|-. .++++|.++=.+.|+++--..+.+
T Consensus 378 ikal~v~g~NP~~s~p~~-~~v~~aL~~ldf~Vv~D~f~teTa 419 (539)
T cd02762 378 IRAMIVVAGNPVLSAPDG-ARLEAALGGLEFMVSVDVYMTETT 419 (539)
T ss_pred EEEEEEECCCHHHHCCCH-HHHHHHHHCCCEEEEEECCCCHHH
T ss_conf 289999688878626489-999999858994999848888204
No 237
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=84.54 E-value=2.9 Score=20.89 Aligned_cols=88 Identities=14% Similarity=-0.017 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCCEEC-CCCCCCCCHHHH--CCCC-CCCCC-HHHH
Q ss_conf 1456688875201344531478504323235-554788986368772420-233444664340--1254-67787-8774
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLSSVEE-IYALKLLMQSLGCENFDC-RQNGEYLDPSYG--RASY-IFNPT-IQGI 373 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~t~Ee-~y~~k~l~~~lGt~nid~-~~~~~~~~~~~~--~~~~-~~~~~-i~di 373 (700)
-.++++.+++.|.+.+.-. .++|....... .-.+++|+..+|.+-+.. ......++...- .+.+ ..... -+-+
T Consensus 183 ~~~~l~~~~~~L~~AkrPv-ii~G~g~~~~~a~~~l~~lae~l~~PV~~t~~~gk~~~~~~hp~~~G~~~~~~~~~~~~l 261 (521)
T PRK07092 183 DPAALAALGDALDAARNPA-LVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPERHPLFAGFLPASREGISALL 261 (521)
T ss_pred CHHHHHHHHHHHHCCCCCE-EEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999999997289978-998767040354999999999869977873276642468998643242544389999998
Q ss_pred HCCCEEEEECCCCCC
Q ss_conf 018579997385322
Q gi|254780859|r 374 EEADAMLIIGSNPRL 388 (700)
Q Consensus 374 e~ad~illiG~Np~~ 388 (700)
+++|+||.+|+...+
T Consensus 262 ~~aDlvl~lG~~l~~ 276 (521)
T PRK07092 262 DGHDLVLVIGAPVFT 276 (521)
T ss_pred HHCCEEEEECCCCCC
T ss_conf 528999996887521
No 238
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=84.37 E-value=0.31 Score=27.94 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=46.5
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCC-CEEEECCCCCCEEEECCCCC-C----------------------------CCC
Q ss_conf 21006432901002364543206874-00333066641266205875-5----------------------------565
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVS-ELGLVGRGENAEITTYLEQS-L----------------------------TSE 199 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~-~lg~~~RG~~~~i~~~~~~~-~----------------------------~~e 199 (700)
-+..|-..||=|-=|--+|+|-.-+. .|+.-+.-....|+.|.+.+ | .|=
T Consensus 25 A~LiDVS~CIGCKAC~~aC~eWnD~~p~I~~Peevik~~vg~Y~np~DL~~~~f~lMrF~E~enPe~d~leWlIrKdgCM 104 (293)
T TIGR01582 25 AKLIDVSSCIGCKACQAACQEWNDTRPDILSPEEVIKRKVGVYQNPVDLLEETFTLMRFKEVENPESDGLEWLIRKDGCM 104 (293)
T ss_pred EEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCEEEEEECCCC
T ss_conf 67863066645312221035664427888763778752036637876556201455223326587678724778624732
Q ss_pred CC--CCEEECCCC-CCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCCEEEE
Q ss_conf 46--622201212-10122332333444302352201-211688643667
Q gi|254780859|r 200 MQ--GNIIDLCPV-GALTSKPFAFTGRSWELTKTDSI-DVMDALGSAIRI 245 (700)
Q Consensus 200 ~~--Gncvd~CPv-GALt~k~~~~~~Rpwel~~~~Sv-C~~C~~GC~i~v 245 (700)
.| =-|.-+||- ||+. +|..---|..+-+-| |.||=+||...+
T Consensus 105 HC~ePGCL~ACPaPGAii----QY~NGiVDF~h~kCIGCgyCi~GCPFnI 150 (293)
T TIGR01582 105 HCREPGCLKACPAPGAII----QYQNGIVDFDHEKCIGCGYCIVGCPFNI 150 (293)
T ss_pred CCCCCCCCCCCCCCCCEE----EECCCEEECCCCCEECCCCCCCCCCCCC
T ss_conf 138778532258678457----5048637411586000673025878888
No 239
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=84.24 E-value=3 Score=20.81 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHHHH
Q ss_conf 45668887520134453147850432-32355547889863687724202334446643----4012546778-787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLS-SVEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~-t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~die 374 (700)
.++++.+++.|++.+.-+ .++|... ..+..-.+.+|+..+|.+-+.+......++.. .|...+..+. ...-++
T Consensus 183 ~~~i~~a~~~L~~A~rPv-Ii~G~gv~~~~a~~~l~~Lae~lg~PV~tt~~~kg~~p~~hpl~~G~~G~~g~~~~~~~l~ 261 (579)
T TIGR03457 183 ATSLAQAARLLAEAKFPV-IISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLIS 261 (579)
T ss_pred HHHHHHHHHHHHCCCCCE-EEECCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999996489968-9979742443269999999997397701154455667987765567666534699999985
Q ss_pred CCCEEEEECCCCC
Q ss_conf 1857999738532
Q gi|254780859|r 375 EADAMLIIGSNPR 387 (700)
Q Consensus 375 ~ad~illiG~Np~ 387 (700)
++|+||++|+...
T Consensus 262 ~aDlvl~lG~rl~ 274 (579)
T TIGR03457 262 DADVVLALGTRLG 274 (579)
T ss_pred HCCCEEEECCCCC
T ss_conf 2572254223455
No 240
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=84.12 E-value=0.27 Score=28.33 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=6.5
Q ss_pred HHHHHHHCCCCEEECC
Q ss_conf 7789997599706616
Q gi|254780859|r 396 RIRKRWRRGNFPIAVI 411 (700)
Q Consensus 396 rirka~~~g~~~I~vi 411 (700)
+++.+..+|...+++-
T Consensus 94 hl~~a~~Nga~~~~~g 109 (354)
T COG2768 94 HLRNATENGATYIVTG 109 (354)
T ss_pred HHHHHHHCCEEEEECC
T ss_conf 9899874340366506
No 241
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.07 E-value=3.1 Score=20.75 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=45.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC-HHHHHC
Q ss_conf 566888752013445314785043232-355547889863687724202334446643----40125467787-877401
Q gi|254780859|r 302 YALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT-IQGIEE 375 (700)
Q Consensus 302 eAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~-i~die~ 375 (700)
+.++.+++.|++.+.-. .++|..... +..-.+.+|+..+|.+-+.+......++.. .|......+.. ..-+.+
T Consensus 192 ~~i~~~~~~L~~akrPv-i~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hpl~~G~~G~~g~~~a~~~~~~ 270 (560)
T PRK08527 192 RQIKKAAEAIKEAKKPL-FYLGGGAISSNASELIRELVKKTGIPAVETLMALGTLRSDDPLNLGMAGMHGSYAANMALSE 270 (560)
T ss_pred HHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 99999999998568986-99177601446999999999985998564445677777788422587777676999999834
Q ss_pred CCEEEEECCCCCC
Q ss_conf 8579997385322
Q gi|254780859|r 376 ADAMLIIGSNPRL 388 (700)
Q Consensus 376 ad~illiG~Np~~ 388 (700)
+|+||++|+...+
T Consensus 271 aDlvl~lG~rl~~ 283 (560)
T PRK08527 271 CDLLISLGARFDD 283 (560)
T ss_pred CCEEEEECCCCCC
T ss_conf 8869981576775
No 242
>PRK06273 ferredoxin; Provisional
Probab=83.82 E-value=0.42 Score=26.98 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE------EEEE-------CCCCCCCCCEEEE
Q ss_conf 56546622201212101223323334443023------5220-------1211688643667
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSKPFAFTGRSWELT------KTDS-------IDVMDALGSAIRI 245 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~------~~~S-------vC~~C~~GC~i~v 245 (700)
.|-=||.|..+|||||++-+|.. |.+++ .+|- .|-+|..=|.+..
T Consensus 52 ~CIGC~GCaNvCPT~AIeM~~~e----PVkite~~vK~~iP~id~ekCV~C~yCHDFCPvfs 109 (163)
T PRK06273 52 LCIGCGGCANACPTKAIEMIPVE----PVKITETYVKEAIPKIDYEKCVYCLYCHDFCPVFA 109 (163)
T ss_pred HCCCCCCCCCCCCCCCEEEEECC----CEEEECCHHHHCCCCCCHHHEEEEEECCCCCHHHH
T ss_conf 64365550023887755777656----56741103331266467332079887365243889
No 243
>KOG3309 consensus
Probab=83.71 E-value=1.8 Score=22.47 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=32.2
Q ss_pred CCE--EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 999--99968887588999986895461212799964560004799971
Q gi|254780859|r 10 DGI--EIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIK 56 (700)
Q Consensus 10 dg~--~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve 56 (700)
||. .++++.|.|||++|..+||+++- ...-.=+|-.|=|-|+
T Consensus 52 dG~~~~i~g~vGdtlLd~ah~n~idleG-----ACEgslACSTCHViv~ 95 (159)
T KOG3309 52 DGEEIKIKGKVGDTLLDAAHENNLDLEG-----ACEGSLACSTCHVIVD 95 (159)
T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCCCC-----CCCCCCCCCCEEEEEC
T ss_conf 9978875520443799999874987656-----3356210131089975
No 244
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]; InterPro: IPR010241 This entry represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. In higher plants, ferredoxin is the unique soluble electron carrier protein located in the stroma, and a wide variety of essential metabolic and signalling processes depend upon the reduction by ferredoxin. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photosynthesis. For instance, in Arabidopsis two ferredoxins are leaf-type that support high photosynthetic activity, while one is a root-type that is more efficiently reduced under non-photosynthetic conditions and supporting a higher activity of sulphite reduction .; GO: 0009055 electron carrier activity, 0051537 2 iron 2 sulfur cluster binding, 0006118 electron transport.
Probab=83.32 E-value=0.58 Score=25.98 Aligned_cols=40 Identities=40% Similarity=0.658 Sum_probs=35.2
Q ss_pred CEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 9999968887588999986895461212799964560004799971
Q gi|254780859|r 11 GIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIK 56 (700)
Q Consensus 11 g~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve 56 (700)
...+++++..-||++|+..||++|+-|- +|+|-.|.=.|+
T Consensus 13 ~~~~~~~~~~y~ld~ae~~G~~lPysCr------~G~Cs~C~G~~~ 52 (96)
T TIGR02008 13 EETIEVPDDEYILDAAEEEGIDLPYSCR------AGACSTCAGKVK 52 (96)
T ss_pred CEEEECCCCEEEEECHHHCCCCCCCCCC------CCCCCCCCCEEE
T ss_conf 3166317631223112005854553236------787443334432
No 245
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family; InterPro: IPR011886 Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.; GO: 0005506 iron ion binding, 0006118 electron transport.
Probab=83.31 E-value=0.25 Score=28.61 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=12.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2354433210474698989899988741058533475
Q gi|254780859|r 453 IIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGF 489 (700)
Q Consensus 453 ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~ 489 (700)
||+|+|+. ....++-+...+=-..+.|.|.
T Consensus 150 iiFG~g~g-------~~~i~~vFl~Dll~~~rgWCgH 179 (263)
T TIGR02163 150 IIFGMGAG-------IWLILLVFLFDLLVSERGWCGH 179 (263)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999-------9999999999998506764266
No 246
>PRK11269 glyoxylate carboligase; Provisional
Probab=83.24 E-value=3.3 Score=20.52 Aligned_cols=111 Identities=10% Similarity=-0.054 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHC--CCCC--CCCC--HHHH
Q ss_conf 456688875201344531478504323-2355547889863687724202334446643401--2546--7787--8774
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSS-VEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGR--ASYI--FNPT--IQGI 373 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t-~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~--~~~~--~~~~--i~di 373 (700)
++.++.+++.|++.+.-. .++|...- .+..-.+..|+..+|.+-+.+......++...-+ +... .+.. -.-+
T Consensus 190 ~~~i~~a~~lL~~AkrPv-Ii~G~G~~~~~a~~~l~~lae~l~iPV~tT~~gkg~~p~dhpl~~G~~G~~~~~~~~~~~l 268 (591)
T PRK11269 190 RAQIEKALAMLNAAERPL-IVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATL 268 (591)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999997278987-9958880311159999999985399789850677878998854567746541048899987
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHH
Q ss_conf 0185799973853225731025778999759970661685012
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGE 416 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~ 416 (700)
.+||+||.+|+...+.++--. ..+..+.+.|.++-+..+
T Consensus 269 ~~aDlvl~iG~r~~~~~t~~~----~~~~~~~~iI~Ididp~~ 307 (591)
T PRK11269 269 LASDFVLGIGNRWANRHTGSV----EVYTEGRKFVHVDIEPTQ 307 (591)
T ss_pred HCCCEEEEECCCCCCCCCCCC----CCCCCCCEEEEECCCHHH
T ss_conf 237869997676643456875----446888638994589899
No 247
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=83.20 E-value=0.27 Score=28.33 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=6.1
Q ss_pred CCEEECCCCCCCCC
Q ss_conf 62220121210122
Q gi|254780859|r 202 GNIIDLCPVGALTS 215 (700)
Q Consensus 202 Gncvd~CPvGALt~ 215 (700)
+=|.-+||.|++.+
T Consensus 183 ~~C~ylCP~g~~~~ 196 (386)
T COG0348 183 FWCRYLCPYGAFQG 196 (386)
T ss_pred CEEEEECCHHHHHH
T ss_conf 51677586899998
No 248
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=83.19 E-value=0.37 Score=27.39 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.9
Q ss_pred CCCCCCCEEECCCCCCCCC
Q ss_conf 5654662220121210122
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTS 215 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~ 215 (700)
.|.-||.|+++||++||+-
T Consensus 30 ~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 30 KCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred CCCCCCCHHHHCCHHHHHH
T ss_conf 1986863454576888752
No 249
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=83.11 E-value=2 Score=22.04 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=14.7
Q ss_pred HHHHHHHHHCCCCEEECCCCCHHHHHHHHCC
Q ss_conf 2577899975997066168501223344304
Q gi|254780859|r 394 NARIRKRWRRGNFPIAVIGDVGELRYKYEHL 424 (700)
Q Consensus 394 ~~rirka~~~g~~~I~vi~~~~~l~~~~~~l 424 (700)
++|||+.+++++.+|+-.+|.+..-|....+
T Consensus 296 AlkI~eiA~en~v~~~e~PpLARaLY~~vei 326 (352)
T TIGR00328 296 ALKIKEIAEENNVPIVENPPLARALYRQVEI 326 (352)
T ss_pred HHHHHHHHHHCCCCEECCCHHHHHHHHHCCC
T ss_conf 8999999988691144087358752110547
No 250
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=82.69 E-value=2.2 Score=21.83 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=37.6
Q ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC
Q ss_conf 4999999999968887588999986895461212799964560004799971798-87020026566456
Q gi|254780859|r 5 VKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIA-SKPQASCAMNVSDL 73 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~-~k~~~sC~t~v~~g 73 (700)
.+|+|||++.++++++||.+..+..++.-.+ ..||+.+.- ||- .=-.|.+++|
T Consensus 1 M~I~vNGe~~~~~~~~tl~~Ll~~l~~~~~~---------------vAVevN~~ivpr~-~~~~~~L~eg 54 (66)
T PRK05659 1 MNIQLNGEPRELPDGESVAALLAREGLAGRR---------------VAVEVNGEIVPRS-QHASTALREG 54 (66)
T ss_pred CEEEECCEEEECCCCCCHHHHHHHCCCCCCC---------------EEEEECCEECCHH-HHCCCCCCCC
T ss_conf 9999999687869999699999876999980---------------9999899881778-9572658999
No 251
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=82.63 E-value=0.49 Score=26.48 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=4.6
Q ss_pred HCCCEEEEEC
Q ss_conf 0185799973
Q gi|254780859|r 374 EEADAMLIIG 383 (700)
Q Consensus 374 e~ad~illiG 383 (700)
.+.+++++=|
T Consensus 156 ~~~~~LIiNG 165 (444)
T TIGR01945 156 KKVELLIING 165 (444)
T ss_pred CCCEEEEEEC
T ss_conf 5210789804
No 252
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=82.53 E-value=0.25 Score=28.64 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=17.2
Q ss_pred CCCCC---CCCCCCEEECCCCCCCCCC
Q ss_conf 87555---6546622201212101223
Q gi|254780859|r 193 EQSLT---SEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 193 ~~~~~---~e~~Gncvd~CPvGALt~k 216 (700)
++|.+ |..|.-|+|+||+|||...
T Consensus 179 d~p~~~~~Cg~C~~CidaCPt~Al~~~ 205 (337)
T COG1600 179 DRPEEEDHCGSCTRCLDACPTGALVAP 205 (337)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 998777757216899863985342788
No 253
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=82.39 E-value=0.75 Score=25.18 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=7.7
Q ss_pred CCCCCCEEECCCCCCC
Q ss_conf 6546622201212101
Q gi|254780859|r 198 SEMQGNIIDLCPVGAL 213 (700)
Q Consensus 198 ~e~~Gncvd~CPvGAL 213 (700)
|.-|+.||..||=||.
T Consensus 164 CiGc~~Cv~aCPY~~~ 179 (321)
T TIGR03478 164 CKGYRYCVEACPYKKV 179 (321)
T ss_pred CCCHHHHHHCCCCCCC
T ss_conf 8035799961999995
No 254
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=82.35 E-value=3.5 Score=20.29 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=49.6
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCC-CCHHHHHC
Q ss_conf 56688875201344531478504323-2355547889863687724202334446643----401254677-87877401
Q gi|254780859|r 302 YALKAIKSAVLSSDVKLGAVVGDLSS-VEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFN-PTIQGIEE 375 (700)
Q Consensus 302 eAl~~ia~~L~~~~~~~g~~~g~~~t-~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~-~~i~die~ 375 (700)
++++.+++.|++.+.-. .++|.... .+..-.+.+|...+|.+-+.+-.....++.. .|......+ ....-+++
T Consensus 188 ~~i~~aa~~L~~AkrPv-Il~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~ 266 (550)
T COG0028 188 EAIRKAAELLAEAKRPV-ILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALEE 266 (550)
T ss_pred HHHHHHHHHHHCCCCCE-EEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99999999997389978-99888656413499999999987989897245576678768753543445650889976543
Q ss_pred CCEEEEECCCCCCCCC
Q ss_conf 8579997385322573
Q gi|254780859|r 376 ADAMLIIGSNPRLEAA 391 (700)
Q Consensus 376 ad~illiG~Np~~~~P 391 (700)
+|++|++|+...+-.+
T Consensus 267 aDlll~vG~rf~~~~~ 282 (550)
T COG0028 267 ADLLLAVGARFDDRVT 282 (550)
T ss_pred CCEEEEECCCCCCCCC
T ss_conf 8899995877865554
No 255
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.95 E-value=3.7 Score=20.19 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC-HHHHH
Q ss_conf 456688875201344531478504323235-5547889863687724202334446643----40125467787-87740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEE-IYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT-IQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee-~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~-i~die 374 (700)
++.++.+++.|.+.+.-. .++|....... .-.+++|++.+|.+-+.+......++.. .|......+.. -.-++
T Consensus 193 ~~~i~~a~~~L~~AkrPv-Ii~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~g~~~~~~~l~ 271 (574)
T PRK07979 193 KGQIKRALQTLVAAKKPV-VYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMH 271 (574)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999997279988-9982773435489999999987198778740456789987742267777778689999984
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 18579997385322
Q gi|254780859|r 375 EADAMLIIGSNPRL 388 (700)
Q Consensus 375 ~ad~illiG~Np~~ 388 (700)
+||+||++|+...+
T Consensus 272 ~aDlvl~lG~~l~~ 285 (574)
T PRK07979 272 NADVIFAVGVRFDD 285 (574)
T ss_pred CCCEEEEEEECCCC
T ss_conf 38869999851687
No 256
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=81.74 E-value=3.7 Score=20.14 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHC--CC-CCCCCCH--HHHH
Q ss_conf 45668887520134453147850432-32355547889863687724202334446643401--25-4677878--7740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLS-SVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGR--AS-YIFNPTI--QGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~-t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~--~~-~~~~~~i--~die 374 (700)
+++++.+++.|++.+.-. .++|... .....-.+++|++.+|.+-+.+......++...-. +. +..+... .-++
T Consensus 211 ~~~i~~a~~lL~~AkrPv-Ii~G~g~~~~~a~~~l~~lae~~~iPV~tt~~gkg~~~e~hpl~~G~~G~~g~~~a~~ai~ 289 (615)
T PRK07418 211 PRQINAALDLIEEAERPL-LYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDERHPLSVGMLGMHGTAYANFAVT 289 (615)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999998479978-9989870511289999999997589702310355665667864455557778888887663
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 185799973853225
Q gi|254780859|r 375 EADAMLIIGSNPRLE 389 (700)
Q Consensus 375 ~ad~illiG~Np~~~ 389 (700)
++|+||.+|+...+.
T Consensus 290 ~aDlvl~vG~r~~d~ 304 (615)
T PRK07418 290 ECDLLIAVGARFDDR 304 (615)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 488699965767765
No 257
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.70 E-value=3.7 Score=20.13 Aligned_cols=108 Identities=11% Similarity=-0.008 Sum_probs=51.0
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC-HHHHHC
Q ss_conf 566888752013445314785043232-355547889863687724202334446643----40125467787-877401
Q gi|254780859|r 302 YALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT-IQGIEE 375 (700)
Q Consensus 302 eAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~-i~die~ 375 (700)
+.++.+++.|++.+.-. .++|..... ...-.+.+|+..+|.+-+.+......++.. .|......+.. ..-+.+
T Consensus 202 ~~l~~a~~~L~~AkrPv-il~G~Gv~~~~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hpl~~G~~G~~g~~~a~~~~~~ 280 (570)
T PRK06725 202 MKLREVAKAISKAKRPL-LYIGGGVIHSGGSDELIKFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTE 280 (570)
T ss_pred HHHHHHHHHHHHCCCCE-EECCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 99999999998568987-98367600464899999999986998994245688899998555787777677999998731
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 857999738532257310257789997599706616850
Q gi|254780859|r 376 ADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414 (700)
Q Consensus 376 ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~ 414 (700)
+|++|++|+...+..+--.. ....+.+.|.++-+.
T Consensus 281 aDlvl~iG~rl~~~~t~~~~----~~~~~~k~i~Ididp 315 (570)
T PRK06725 281 CDLLLALGVRFDDRVTGKLE----LFSPHSKKVHIDIDP 315 (570)
T ss_pred CCEEEEECCCCCCCCCCCCC----CCCCCCEEEEEECCH
T ss_conf 88787405557765678855----468987389996999
No 258
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=80.97 E-value=0.5 Score=26.45 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=33.8
Q ss_pred HHCCCCCHHHHHHH-HCCCCCCEEEECCCCCCEEEECCC---------CCCCCCCCCCEEECCCCCCC
Q ss_conf 32901002364543-206874003330666412662058---------75556546622201212101
Q gi|254780859|r 156 NRCIHCTRCVRFIT-EVAGVSELGLVGRGENAEITTYLE---------QSLTSEMQGNIIDLCPVGAL 213 (700)
Q Consensus 156 ~rCI~C~RCVR~c~-Ev~g~~~lg~~~RG~~~~i~~~~~---------~~~~~e~~Gncvd~CPvGAL 213 (700)
+.|..|++|++.|- |+......|...| -.|--.+- ++-.|.-||.|...||-+|+
T Consensus 224 d~CtgCg~C~~vCPve~~nefn~Gl~~~---kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av 288 (622)
T COG1148 224 DKCTGCGACSEVCPVEVPNEFNEGLGKR---KAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAV 288 (622)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEECCCHHHCCCCCCCCHHHHCCCHHHHHCCCCCCC
T ss_conf 1265532222347765675101254532---3564256455254532171650210356643993000
No 259
>TIGR02910 sulfite_red_A sulfite reductase, subunit A; InterPro: IPR014259 This entry represents subunit A, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=80.30 E-value=0.42 Score=26.95 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=13.7
Q ss_pred ECCCCCCCCCHHHHCCCCHHHEECCCCEEECCHHH
Q ss_conf 13554221000000001101100222202324145
Q gi|254780859|r 268 ISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDY 302 (700)
Q Consensus 268 lC~KGRf~~d~~~~dRL~~PliR~~g~~~~iSWde 302 (700)
|-.||+|+ ..|++.+--| ..|+++.|++
T Consensus 29 l~~kG~FS----DTD~irY~~i---~~~~ei~f~~ 56 (346)
T TIGR02910 29 LFGKGTFS----DTDNIRYQEI---SGVEEIEFKE 56 (346)
T ss_pred HCCCCCCC----CCCCEEEEEC---CCEECCCCCC
T ss_conf 20688513----4562561001---7510001011
No 260
>KOG3256 consensus
Probab=79.96 E-value=0.48 Score=26.57 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=49.1
Q ss_pred CCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCC-CEEEECCCCCCEEEECCCCCC------------------CCCCCCC
Q ss_conf 788856021006432901002364543206874-003330666412662058755------------------5654662
Q gi|254780859|r 143 EDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVS-ELGLVGRGENAEITTYLEQSL------------------TSEMQGN 203 (700)
Q Consensus 143 ~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~-~lg~~~RG~~~~i~~~~~~~~------------------~~e~~Gn 203 (700)
..++..|-+..+|||=++- ++|.+=++|.. .|+-+.|-.-|.=-||...|+ .|--|--
T Consensus 42 ~~~e~~~~~~~~~n~~~~t---l~~te~~rGf~itLsh~f~~p~TInYPfEKgplS~RFRGehalrRyp~geerCIACkl 118 (212)
T KOG3256 42 NMKEMSPDITGVMNRGQQT---LFATELIRGFMITLSHTFREPVTINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKL 118 (212)
T ss_pred CHHHCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHH
T ss_conf 3000256788888888899---9999999888766776437871355741237888011561233217885212136788
Q ss_pred EEECCCCCCCCCCCCC--C-CCCCCCEEEEEECCCCCCC---CCEEEEECCC
Q ss_conf 2201212101223323--3-3444302352201211688---6436675159
Q gi|254780859|r 204 IIDLCPVGALTSKPFA--F-TGRSWELTKTDSIDVMDAL---GSAIRIDARG 249 (700)
Q Consensus 204 cvd~CPvGALt~k~~~--~-~~Rpwel~~~~SvC~~C~~---GC~i~v~v~~ 249 (700)
|..+||.-|+|-.--. - +-|.-.-.---|.|.+||. -|.+..-|.+
T Consensus 119 CeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiveg 170 (212)
T KOG3256 119 CEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 170 (212)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCCEEECCCCEEEEEECCHHHHCCCCCEECC
T ss_conf 8874874454552221377542102104452146560453643872312116
No 261
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=79.78 E-value=4.3 Score=19.69 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEECCCCCCCCCHHH----HCCCCCCCCCH--HHH
Q ss_conf 4566888752013445314785043232355-5478898636877242023344466434----01254677878--774
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEI-YALKLLMQSLGCENFDCRQNGEYLDPSY----GRASYIFNPTI--QGI 373 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~-y~~k~l~~~lGt~nid~~~~~~~~~~~~----~~~~~~~~~~i--~di 373 (700)
+++++.+++.|++.+.-. .++|........ -.+++|++.+|.+-+.+......++... |.. +...... .-+
T Consensus 201 ~~~i~~a~~~L~~AkrPv-Ii~G~g~~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~~e~hpl~~G~~-G~~g~~~a~~~l 278 (588)
T CHL00099 201 SKQIEQAANLIKQSSQPL-LYVGGGAIISGAHDEIKELAELFKIPVTTTLMGKGIFDESHPLCLGML-GMHGTAYANFAV 278 (588)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHH
T ss_conf 999999999997169978-997886332139999999999759987972356877766684225877-787899998776
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHH
Q ss_conf 01857999738532257310257789997599706616850122
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGEL 417 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l 417 (700)
+++|+||++|+...+...-.... ...+.+.|.++.+..++
T Consensus 279 ~~aDlvl~lG~~l~~~~t~~~~~----~~~~~~iI~Id~d~~~i 318 (588)
T CHL00099 279 SECDLLIALGARFDDRVTGKLDE----FACNAQVIHIDIDPAEI 318 (588)
T ss_pred HCCCHHEECCCCCCCCCCCCCCC----CCCCCEEEEEECCHHHH
T ss_conf 42411100488678665687433----58885279961899996
No 262
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=79.11 E-value=3.3 Score=20.56 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=36.8
Q ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCCCCCCCCCCCCCCC
Q ss_conf 499999999996888758899998689546121279996456000479997179-8870200265664566
Q gi|254780859|r 5 VKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGI-ASKPQASCAMNVSDLR 74 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~-~~k~~~sC~t~v~~gm 74 (700)
.+|+|||++.+++.|.||-+.....++.-+ =|.|+|.+. =||- .=..|++++|-
T Consensus 1 M~I~iN~e~~e~~~~~tl~~Ll~~l~~~~~---------------giAvAiN~~vVPRs-~W~~~~L~egD 55 (66)
T PRK08053 1 MQILFNDQPMQCAAGQTVHELLEQLNQLQP---------------GAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_pred CEEEECCEEEECCCCCCHHHHHHHHCCCCC---------------CEEEEECCEEECHH-HCCCCCCCCCC
T ss_conf 999999988786899859999987278888---------------58999889785578-86653168999
No 263
>PRK03772 threonyl-tRNA synthetase; Validated
Probab=78.81 E-value=1.8 Score=22.38 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred CEEEEE-CCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 049999-9999996888758899998689546121279996456000479997179887020026566456637666853
Q gi|254780859|r 4 MVKLKV-DGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELP 82 (700)
Q Consensus 4 mv~~~I-dg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~ 82 (700)
||+||. ||+..+++.|+|++|+|+..|..... ....+.|+|. ++- =.+|+.++= -.
T Consensus 1 M~~ItLPDGs~~~~~~~~t~~dIA~~Is~~Lak-------------~avaa~vng~---l~D-l~~~i~~d~------~l 57 (642)
T PRK03772 1 MPVITLPDGSQRHFDHPVSPMDVALDIGPGLAK-------------ACIAGRVNGE---LVD-ACDLIENDA------QL 57 (642)
T ss_pred CCEEECCCCCEEECCCCCCHHHHHHHHCHHHHH-------------HHEEEEECCE---EEE-CCCCCCCCC------EE
T ss_conf 977987899835678999999999997867766-------------6289998999---986-686157997------79
Q ss_pred E-EEECCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHCCC-CCCCCC-CC--CCCCCCCCCCHHCCCHH
Q ss_conf 7-98199899999999999998278998-8778887888379989983898-674777-56--77878885602100643
Q gi|254780859|r 83 E-VFTKSSMVKKARAGVMEFLLINHPLD-CPICDQGGECDLQDQAIFFGFG-SSRYSE-EK--RAVEDKSIGPLVKTVMN 156 (700)
Q Consensus 83 ~-v~t~s~~v~~~r~~vle~ll~nHpld-Cp~Cd~~GeC~LQd~~~~~g~~-~~r~~~-~k--~~~~~~~~~p~i~~d~~ 156 (700)
+ +..++++.++.=+--.-.+|..-=.+ =| ++. +..|+. +.-|++ .. +.+..++ =+-|.-.|.
T Consensus 58 e~it~~d~eg~~v~rHS~AHvla~Av~~l~p------~~k-----l~iGP~ie~GFYYDf~~~~~~t~~D-l~~IE~~M~ 125 (642)
T PRK03772 58 SIITAKDEEGLEIIRHSCAHLLGHAIKQLWP------HTK-----MAIGPVIDNGFYYDVDLDRTLTQED-LEALEKRMH 125 (642)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHCC------CCE-----EEECCCCCCEEEEEECCCCCCCHHH-HHHHHHHHH
T ss_conf 9935899789999988899999999999769------967-----8457865771577224799999899-999999999
Q ss_pred HCCCCCHHHHHHHHCCCCCCEEEEC-CCC--CCEEEE---CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 2901002364543206874003330-666--412662---0587555654662220121210122332333444302352
Q gi|254780859|r 157 RCIHCTRCVRFITEVAGVSELGLVG-RGE--NAEITT---YLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKT 230 (700)
Q Consensus 157 rCI~C~RCVR~c~Ev~g~~~lg~~~-RG~--~~~i~~---~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~ 230 (700)
+-|-=.. -=...|+.-..++.+.. +|. ..++.- ..+...+-.-+|+-+|+|==.-+.+..+. ..+.|.++
T Consensus 126 ~iik~~~-~~~r~~~s~~eA~~~f~~~~~~yK~eli~e~~~~~~~is~Y~~g~f~DLCrGPHvp~t~~i---kafkl~~v 201 (642)
T PRK03772 126 ELAKTNY-DVIKKKVSWQEARDTFAARGESYKVAILDENISHDDKPGLYHHEEYVDMCRGPHVPNMRFC---HHFKLMKT 201 (642)
T ss_pred HHHHCCC-CEEEEEECHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCC---CEEEEEEC
T ss_conf 9984699-8499996889999999852863554555422778882679935987895588877875555---32577312
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf 201211688643667515999988524
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILP 257 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~ 257 (700)
.|.-.+-+.++-.+.||.|
T Consensus 202 --------agAYWrGd~~n~~LqRIYG 220 (642)
T PRK03772 202 --------AGAYWRGDSNNKMLQRIYG 220 (642)
T ss_pred --------CHHEECCCCCCCHHEEEEE
T ss_conf --------3211477765700079999
No 264
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=78.62 E-value=0.16 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=14.3
Q ss_pred CCCHHHEECCCCEEEC---CHHHHHHHHHHHHCC
Q ss_conf 0110110022220232---414566888752013
Q gi|254780859|r 283 RLDCPYARINGRLKPV---SWDYALKAIKSAVLS 313 (700)
Q Consensus 283 RL~~PliR~~g~~~~i---SWdeAl~~ia~~L~~ 313 (700)
-+..|++|.=-.++|- +.++||+++-+.|.+
T Consensus 102 ~v~aP~~~tv~G~kPktLgDl~~~l~Y~E~qit~ 135 (731)
T cd01916 102 DVEAPIIRTVVGIKPKTLGDLEEALEYAEEQIVQ 135 (731)
T ss_pred CEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4103401344166677577799999999999999
No 265
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.34 E-value=4.7 Score=19.39 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHHHH
Q ss_conf 4566888752013445314785043232-355547889863687724202334446643----4012546778-787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~die 374 (700)
+++++.+++.|.+.+.-. .++|..... ...-.+.+|+..+|.+-+.+......++.. .|......+. .-.-++
T Consensus 208 ~~~i~~a~~lL~~AkrPv-Il~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~G~~g~~~a~~~l~ 286 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPY-IYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQ 286 (587)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999998568988-9707882043489999999999788806220457777887743367676768799999985
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 185799973853225
Q gi|254780859|r 375 EADAMLIIGSNPRLE 389 (700)
Q Consensus 375 ~ad~illiG~Np~~~ 389 (700)
++|+||++|+...+.
T Consensus 287 ~aDliL~lG~rl~~~ 301 (587)
T PRK06965 287 HCDVLIAIGARFDDR 301 (587)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 188787546436664
No 266
>cd00565 ThiS ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=78.13 E-value=3.2 Score=20.65 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=32.0
Q ss_pred EEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 9999999999688875889999868954612127999645600047999717
Q gi|254780859|r 6 KLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKG 57 (700)
Q Consensus 6 ~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~ 57 (700)
+|+|||++.+++++.||.+.....++.. ..+.||+.+
T Consensus 1 kI~iNG~~~~~~~~~tl~~ll~~~~~~~---------------~~vaV~~N~ 37 (65)
T cd00565 1 KITVNGEPREVEEGTTLAELLEELGLPP---------------EGVAVEVNG 37 (65)
T ss_pred CEEECCEEEECCCCCCHHHHHHHCCCCC---------------CCEEEEECC
T ss_conf 9899999888699997999998769998---------------859999999
No 267
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=78.01 E-value=2.6 Score=21.29 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=30.8
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 778899987235310235443321047469898989998
Q gi|254780859|r 438 QHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLV 476 (700)
Q Consensus 438 ~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~ 476 (700)
....++.|.+|+||+|+.|-|+..+.++.+-+..++...
T Consensus 203 I~kA~~li~~AkkPVilvGGGvin~a~as~~L~elae~~ 241 (593)
T TIGR00118 203 IKKAAELIEKAKKPVILVGGGVINIAGASEELKELAERL 241 (593)
T ss_pred HHHHHHHHHHHCCCEEEECCHHHHCCCCHHHHHHHHHHC
T ss_conf 999999999726977986413542055407999998540
No 268
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=77.85 E-value=4.9 Score=19.29 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC--HHHH
Q ss_conf 4566888752013445314785043232-355547889863687724202334446643----40125467787--8774
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT--IQGI 373 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~--i~di 373 (700)
.+.++.+++.|.+.+.-. .++|...-. +..-.+.+|+..+|.+-+.+......++.. .|... ..+.. ..-+
T Consensus 194 ~~~i~~a~~~L~~A~rPv-Il~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~p~~hp~~~G~~G-~~~~~~a~~~~ 271 (562)
T PRK06048 194 TQQIKRAAEEIANACRPV-IYAGGGVISSNASAELVELAETLNAPVTTTLMGIGSIPTEHPLYLGMLG-MHGTKYANYAI 271 (562)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHH
T ss_conf 999999999998279978-9957764512289999999998598878633454667766742256666-66768999998
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHH
Q ss_conf 01857999738532257310257789997599706616850122
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGEL 417 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l 417 (700)
+++|+||.+|+...+...- . . .......+.|.++.+...+
T Consensus 272 ~~aDlvl~lG~rl~~~~~~--~-~-~~~~~~~~ii~Id~d~~~i 311 (562)
T PRK06048 272 QESDLIIAVGARFDDRVTG--K-L-ESFAPNARVIHIDVDPAEI 311 (562)
T ss_pred HCCCCEEEECCCCCCCCCC--C-C-CCCCCCCEEEEEECCHHHH
T ss_conf 5478178854446766568--7-4-4368875379972898995
No 269
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=77.73 E-value=4.9 Score=19.27 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.4
Q ss_pred HHHHHHHHCCC-CCCCCHHHHHHHHHHH
Q ss_conf 99999980779-9687989999999997
Q gi|254780859|r 599 ICALADELKCS-LPFSSLSQLRSHLYSH 625 (700)
Q Consensus 599 l~~La~~LG~~-~~~~~~~ei~~ei~~~ 625 (700)
+..||+.||.. +.-.+.+|+.+.+.+.
T Consensus 478 f~~~A~a~G~~g~~V~~~~el~~al~~A 505 (549)
T PRK06457 478 FSKLAESVGIKGFRVEDPNELEEAIEEF 505 (549)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 9999997799799979999999999999
No 270
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=77.15 E-value=2.1 Score=21.88 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=54.8
Q ss_pred EHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCC--CCCHHHHH
Q ss_conf 0221166668874557704786202472088208867420443288555-74079999999998077996--87989999
Q gi|254780859|r 543 VYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGD-AKEDWEIICALADELKCSLP--FSSLSQLR 619 (700)
Q Consensus 543 V~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~ge-ak~dw~Il~~La~~LG~~~~--~~~~~ei~ 619 (700)
|..+.+.=..-+-||+.|+-+.-. ++.. -++++-|.|+ -++-|+.-|+||+|++..|. |.-|+-+.
T Consensus 139 v~~Gl~~yP~lmAADIL~~~~d~~----------~~~~-~~~c~VPVG~DQ~qHleLTRD~A~Rf~~~f~~~f~~P~~~~ 207 (366)
T TIGR00233 139 VSIGLLSYPVLMAADILLYQADEI----------LGPE-KKPCLVPVGIDQDQHLELTRDLAERFNKKFKNFFKLPESLI 207 (366)
T ss_pred CCEEEECCCHHHHHHHHCCCCHHH----------CCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 111201264777634313566012----------5799-97058500588852688988999999887133235860233
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 999997811105542
Q gi|254780859|r 620 SHLYSHHPHFMQLDE 634 (700)
Q Consensus 620 ~ei~~~~P~~~~~~~ 634 (700)
. +..|.+.+++.
T Consensus 208 ~---~~~~~l~gl~~ 219 (366)
T TIGR00233 208 S---KFGARLMGLQG 219 (366)
T ss_pred H---CCCCCCCCCCC
T ss_conf 1---01344668787
No 271
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=76.54 E-value=3.9 Score=19.98 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=38.8
Q ss_pred EEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99999999996888758899998689546121279996456000479997179887020026566456
Q gi|254780859|r 6 KLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDL 73 (700)
Q Consensus 6 ~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~g 73 (700)
+|+|||+++++++++||-+.....|+.- |-..|++.+ .--|-..-.|+.++|
T Consensus 2 ~I~vNge~~e~~~~~Tva~Ll~~l~~~~---------------~giAVavN~-~iVPRs~w~t~L~eG 53 (65)
T PRK05863 2 IVVVNEEQVEVDEQTTVAALLDSLGFPE---------------KGIAVAVDW-SVLPRSEWATKLRDG 53 (65)
T ss_pred EEEECCEEEECCCCCCHHHHHHHCCCCC---------------CCEEEEECC-EEECCHHHCCCCCCC
T ss_conf 8999993578699870999998729998---------------858999789-584506840627899
No 272
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=76.43 E-value=5.3 Score=19.02 Aligned_cols=86 Identities=12% Similarity=0.204 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC--HHHH
Q ss_conf 4566888752013445314785043232-355547889863687724202334446643----40125467787--8774
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT--IQGI 373 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~--i~di 373 (700)
.++++.+++.|.+.+.-. .++|..... ...-.+++|+..+|.+-+.+......++.. .|... ..+.. ..-+
T Consensus 183 ~~~i~~a~~~L~~A~rPv-il~G~gv~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hpl~~G~~G-~~g~~~~~~~~ 260 (548)
T PRK08978 183 AAELEQARALLAQAKKPV-LYVGGGVGMAQAVPALREFLAATGMPAVATLKGLGAVEADYPYYLGMLG-MHGTKAANLAV 260 (548)
T ss_pred HHHHHHHHHHHHCCCCEE-EEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHH
T ss_conf 999999999997479829-9999670401589999999998598788713467655568976567777-77869999997
Q ss_pred HCCCEEEEECCCCCC
Q ss_conf 018579997385322
Q gi|254780859|r 374 EEADAMLIIGSNPRL 388 (700)
Q Consensus 374 e~ad~illiG~Np~~ 388 (700)
+++|+||++|+...+
T Consensus 261 ~~aDlvi~lG~r~~~ 275 (548)
T PRK08978 261 QECDLLIVVGARFDD 275 (548)
T ss_pred HCCCEEEEECCCCCC
T ss_conf 248869994354675
No 273
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=75.97 E-value=5.5 Score=18.94 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHH
Q ss_conf 68874557704786202472088208867420443288555740799999999980779-9687989999999997
Q gi|254780859|r 551 RGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS-LPFSSLSQLRSHLYSH 625 (700)
Q Consensus 551 ~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~-~~~~~~~ei~~ei~~~ 625 (700)
|..-.+..=||.....=.++.| +..+..|.-.. ... .++|. +..||+.||.. +--++.+|+...|.+.
T Consensus 438 EL~Tavr~~lpi~ivV~NN~~y-g~ir~~q~~~~-~~~----l~~~d-f~~lA~a~G~~g~rV~~~~eL~~al~~A 506 (535)
T TIGR03394 438 ELGNCRRLGIDPIVILFNNASW-EMLRVFQPESA-FND----LDDWR-FADMAAGMGGDGVRVRTRAELAAALDKA 506 (535)
T ss_pred HHHHHHHHCCCCEEEEEECCCC-HHHEECCCCCC-CCC----CCCCC-HHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 9999999399988999989942-32120135777-787----99999-9999997799899979899999999999
No 274
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.21 E-value=5.7 Score=18.80 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC--C-CHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHH
Q ss_conf 45668887520134453147850432--3-2355547889863687724202334446643----4012546778-7877
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLS--S-VEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQG 372 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~--t-~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~d 372 (700)
.++++.+++.|++.+.-. .++|+.. + -+..-++++|+..+|.+-+.+......++.. .|......+. ...-
T Consensus 198 ~~~i~~a~~~L~~AkrPv-ii~G~Gv~~sg~~a~~~l~~lae~l~~PV~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~ 276 (594)
T PRK09107 198 AEAIREAVALLANAKRPV-IYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMA 276 (594)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 999999999997178987-9806401220689999999999977878140210266657777666777577788899976
Q ss_pred HHCCCEEEEECCCCCCC
Q ss_conf 40185799973853225
Q gi|254780859|r 373 IEEADAMLIIGSNPRLE 389 (700)
Q Consensus 373 ie~ad~illiG~Np~~~ 389 (700)
+++||+||++|+...+.
T Consensus 277 l~~aDlvl~lG~rl~~~ 293 (594)
T PRK09107 277 MHDCDVMLCIGARFDDR 293 (594)
T ss_pred HHCCCEEEEECCCCCCC
T ss_conf 62588699967756755
No 275
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=74.88 E-value=0.52 Score=26.30 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=35.6
Q ss_pred HHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 21006432901002364543206874003330666412662058755565466222012121012
Q gi|254780859|r 150 LVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 150 ~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt 214 (700)
-|.++..+|+|-+-|||--.+| ++-|-.--|.|. ..+-|.---+|+-||.|||+
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~v--------F~~~rkPWI~Pd---~~~ve~i~~vi~sCPSGAl~ 70 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPKV--------FNLGRKPWIMPD---AVDVEEIVKVIDTCPSGALK 70 (74)
T ss_pred EEEECCCEEECCCCEECCCHHH--------CCCCCCCCCCCC---CCCHHHHHHHHHHCCCHHHH
T ss_conf 8872313020256634288756--------136998731778---78999999999749832222
No 276
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=74.59 E-value=3.4 Score=20.47 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=95.2
Q ss_pred CCCEEEEE-CCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61049999-99999968887588999986895461212799964560004799971798870200265664566376668
Q gi|254780859|r 2 QMMVKLKV-DGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGE 80 (700)
Q Consensus 2 ~~mv~~~I-dg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~ 80 (700)
+.||+||. ||...+++.|+|++++|+..|-..-. ..+.+.|+| +++ -=.+|+.++= .
T Consensus 3 ~~mi~ItLpDGs~~e~~~~~t~~~iA~~I~~~Lak-------------~avaa~vng---~l~-Dl~~~i~~d~-----~ 60 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVKGITLEEIAGSISSSLKK-------------KAVAGKVND---ELY-DLRRNIEENA-----E 60 (639)
T ss_pred CCCEEEECCCCCEEECCCCCCHHHHHHHHCHHHHH-------------HEEEEEECC---EEE-ECCCCCCCCC-----E
T ss_conf 77607982899845678999999999987766665-------------628999899---997-2785168997-----8
Q ss_pred CCEEEE-CCHHHHHHHHHHHHHHHHC-----CCC----CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 537981-9989999999999999827-----899----887788878883799899838986747775677878885602
Q gi|254780859|r 81 LPEVFT-KSSMVKKARAGVMEFLLIN-----HPL----DCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPL 150 (700)
Q Consensus 81 g~~v~t-~s~~v~~~r~~vle~ll~n-----Hpl----dCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~ 150 (700)
.++.| ++++.++.=+--.-.+|.. .|- -=|.=+. .++|..+. .+.+..++ -+-
T Consensus 61 -le~it~~~~eg~~v~rHS~AHvla~Av~~l~p~~kl~iGP~ie~---------GFYYDf~~------~~~~t~~D-l~~ 123 (639)
T PRK12444 61 -VEIITIDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIEN---------GFYYDMDL------PSSVNVED-LRK 123 (639)
T ss_pred -EEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC---------EEEEEECC------CCCCCHHH-HHH
T ss_conf -99955899778999988899999999999779963887898888---------32475346------99999899-999
Q ss_pred HCCCHHHCCCCCHHHHHHHHCCCCCCEEEEC-CC--CCCEEEECC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 1006432901002364543206874003330-66--641266205--875556546622201212101223323334443
Q gi|254780859|r 151 VKTVMNRCIHCTRCVRFITEVAGVSELGLVG-RG--ENAEITTYL--EQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSW 225 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~-RG--~~~~i~~~~--~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpw 225 (700)
|.-.|.+-|-=..=.. ..|+.-..++.+.. +| +..++.-.+ +..++-.-+|+-+|+|==.-+.+.... ..+
T Consensus 124 IE~~M~~iik~~~~f~-r~~~s~~eA~~~f~~~~~~yK~eli~~~~~~~~is~Y~~g~f~DLCrGPHv~~t~~i---kaf 199 (639)
T PRK12444 124 IEKEMKKIINENIKIE-RVEVSREEAAKLFQEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYL---KAF 199 (639)
T ss_pred HHHHHHHHHHCCCCEE-EEEECHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCCCCCCCCCCC---EEE
T ss_conf 9999999873789749-998589999999986384777788751789984328994898896688777874544---078
Q ss_pred CEEEEEECCCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf 02352201211688643667515999988524
Q gi|254780859|r 226 ELTKTDSIDVMDALGSAIRIDARGCEVMRILP 257 (700)
Q Consensus 226 el~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~ 257 (700)
.|.++ .|.--+-+.++-.+.||.|
T Consensus 200 kL~~v--------sgAYWrGd~~n~~LqRIYG 223 (639)
T PRK12444 200 QLTHV--------SGAYWRGDSNNQVLQRIYG 223 (639)
T ss_pred EEEEE--------ECCEECCCCCCCCEEEEEE
T ss_conf 97340--------0214278876822168999
No 277
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=74.27 E-value=6 Score=18.64 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCC--CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9546121279996--45600047999717988702002656645663766685379819989999999999999827899
Q gi|254780859|r 31 AEIPRFCFHERLS--IAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPL 108 (700)
Q Consensus 31 i~IP~~Cy~~~l~--~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v~t~s~~v~~~r~~vle~ll~nHpl 108 (700)
..||+.=....+. -.|.|--|-|.|.| .-| -+|.- +|..+|-+|.-+.-.-+..+=---|---..|..
T Consensus 202 ~~i~t~vsln~iMvDgtGmCG~CRv~v~g-~~k--faCvD-------GPeFd~h~Vd~d~~~~R~~~yk~~ek~~~~~~~ 271 (760)
T PRK12778 202 YEIPTIVSLNTIMVDGTGMCGACRITVGG-KTK--FVCVD-------GPEFDGHQVDFDEMLKRMGAFKTIEREELHKLD 271 (760)
T ss_pred CCCCEEEEEECEEECCCCCCCEEEEEECC-EEE--EEECC-------CCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 58974898408687267753406999899-898--98562-------897566065799999998876888765431124
Q ss_pred CCC
Q ss_conf 887
Q gi|254780859|r 109 DCP 111 (700)
Q Consensus 109 dCp 111 (700)
+|.
T Consensus 272 ~~~ 274 (760)
T PRK12778 272 ECE 274 (760)
T ss_pred CCC
T ss_conf 455
No 278
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=74.24 E-value=0.78 Score=25.06 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=5.2
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 6456000479997
Q gi|254780859|r 43 SIAGNCRMCLVEI 55 (700)
Q Consensus 43 ~~~g~CRmClVev 55 (700)
-.+|.==.++|.+
T Consensus 49 QHiGap~~p~Vkv 61 (725)
T PRK05035 49 QHIGAEGELLVSV 61 (725)
T ss_pred CCCCCCCCCCCCC
T ss_conf 7799877141478
No 279
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.44 E-value=6.3 Score=18.50 Aligned_cols=110 Identities=11% Similarity=-0.018 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHHH
Q ss_conf 14566888752013445314785043232-355547889863687724202334446643----4012546778-78774
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQGI 373 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~di 373 (700)
-+..++.+++.|++.+.-. .++|..... ...-.+.+|+..+|.+-+.+......++.. .|......+. ...-+
T Consensus 192 ~~~~i~~a~~~L~~A~rPv-il~G~g~~~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~~ 270 (572)
T PRK08979 192 HKGQIRRGLQALLAAKKPV-LYVGGGAIISGCDKQILALAEKLNIPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMAM 270 (572)
T ss_pred CHHHHHHHHHHHHHCCCCE-EEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999999998279988-997875353568999999998639975522026789998886556778777769999998
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 01857999738532257310257789997599706616850
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~ 414 (700)
++||+||++|+...+...-.. ..+...++.|.++-+.
T Consensus 271 ~~aDlvl~lG~rl~~~~t~~~----~~~~p~~~iI~id~dp 307 (572)
T PRK08979 271 HNADLIFGIGVRFDDRTTNNV----EKYCPNATILHIDIDP 307 (572)
T ss_pred HHCCEEEEECCCCCCCCCCCC----CCCCCCCEEEEEECCH
T ss_conf 418789982566675556772----2258766068850798
No 280
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=72.40 E-value=6.6 Score=18.34 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCC-HHHHH
Q ss_conf 4566888752013445314785043232-355547889863687724202334446643----40125467787-87740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPT-IQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~-i~die 374 (700)
.++++.+++.|.+.+.-. .++|..... +..-.+.+|+..+|.+-+.+......++.. .|...+..+.. ..-+.
T Consensus 194 ~~~i~~a~~lL~~AkrPv-Il~G~G~~~~~a~~~l~~lae~l~~Pv~tT~~gkg~~p~~hp~~~G~~G~~g~~~~~~~~~ 272 (572)
T PRK06456 194 RQKIKKAAEILINAERPI-ILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKSAIPHDHPLYFGAMGYYGRAEASMAAL 272 (572)
T ss_pred HHHHHHHHHHHHHCCCCE-EEEECCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999998189988-9995582414364999999998399812201455553457865568778768789999875
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 185799973853225
Q gi|254780859|r 375 EADAMLIIGSNPRLE 389 (700)
Q Consensus 375 ~ad~illiG~Np~~~ 389 (700)
++|++|++|+.+.+.
T Consensus 273 ~aDlvl~vG~~l~~~ 287 (572)
T PRK06456 273 ESDAMLVVGARLSDR 287 (572)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 148599980677875
No 281
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=72.12 E-value=0.34 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 555740799999999980779968798999999999
Q gi|254780859|r 589 PGDAKEDWEIICALADELKCSLPFSSLSQLRSHLYS 624 (700)
Q Consensus 589 ~geak~dw~Il~~La~~LG~~~~~~~~~ei~~ei~~ 624 (700)
.|+-.+||+.|- |-..++|+...++++.++.+
T Consensus 722 ~g~~P~D~~~fv----R~E~DlPl~~r~ellk~LEe 753 (772)
T COG1152 722 LGELPPDWWLFV----RTEADLPLAKREELLKYLEE 753 (772)
T ss_pred HCCCCHHHHHHH----CCCCCCCCCCHHHHHHHHHH
T ss_conf 455975776652----35222555479999999998
No 282
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=71.67 E-value=6.8 Score=18.22 Aligned_cols=111 Identities=11% Similarity=0.012 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCC-CHHHHH
Q ss_conf 4566888752013445314785043232355-547889863687724202334446643----4012546778-787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEI-YALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNP-TIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~-y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~-~i~die 374 (700)
.++++.+++.|++.+.-. .++|.......+ -.+.+|+..+|.+-+.+......++.. .|......+. ...-++
T Consensus 190 ~~~i~~a~~~L~~A~rPv-Il~G~g~~~~~a~~~l~~Lae~l~~PV~tt~~gkg~~pe~hpl~~G~~G~~g~~~~~~~l~ 268 (586)
T PRK06276 190 PLQIKKAAELIAEAERPV-ILAGGGVQIANATPELIKLSELAQIPVCTTLMGKGAFPEEHPLALGMVGMHGTKAANYSVY 268 (586)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHH
T ss_conf 999999999997279968-9977870514370999999998499825111456776889802136677657599999973
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHH
Q ss_conf 185799973853225731025778999759970661685012
Q gi|254780859|r 375 EADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGE 416 (700)
Q Consensus 375 ~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~ 416 (700)
++|+||.+|+...+...-... .....++.|.++-+..+
T Consensus 269 ~aDlvl~lG~rl~~~~t~~~~----~~~p~~kiI~Id~dp~~ 306 (586)
T PRK06276 269 ESDVLIAIGCRFSDRITGDIS----SFAPNAKIIHIDIDPAE 306 (586)
T ss_pred CCCEEEEECCCCCCCCCCCCC----CCCCCCEEEEEECCHHH
T ss_conf 388699952305765667866----57887515897189999
No 283
>PRK09800 putative selenate reductase subunit YgfN; Provisional
Probab=71.66 E-value=3.3 Score=20.50 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=43.0
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHH-HHHHCCCCCCCCCCCC
Q ss_conf 9996456000479997179887020026566456637666853798199899999999999-9982789988778887
Q gi|254780859|r 40 ERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVME-FLLINHPLDCPICDQG 116 (700)
Q Consensus 40 ~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v~t~s~~v~~~r~~vle-~ll~nHpldCp~Cd~~ 116 (700)
+..+..|.|--|.|=|+| |++-||.+|+.- -+|-+|.|---.........|+ --+..+-..|-.|--|
T Consensus 8 ~gc~~~G~CGaCtVl~dG---~~~~sC~~~~~~------~~g~~v~T~egl~~~~~~~~~q~af~~~ga~QCGfCtpg 76 (928)
T PRK09800 8 NSDDGFGFAGSDAIIFNG---NIVNASLLIAAQ------LEKADIRTAESLGKWNELSLVQQAMVDVGVVQSGYNDPA 76 (928)
T ss_pred CCCCCCCCCCCCEEEECC---EEEEHHHCCHHH------HCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 787999687504899989---183520354988------289879961577986543799999998098625776463
No 284
>PRK13409 putative ATPase RIL; Provisional
Probab=70.99 E-value=2.5 Score=21.38 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=44.6
Q ss_pred HHCCCCCHHHHHHHHCC-CCCCEEEECCCCCCEEEECCCCCC----CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 32901002364543206-874003330666412662058755----5654662220121210122332333444302352
Q gi|254780859|r 156 NRCIHCTRCVRFITEVA-GVSELGLVGRGENAEITTYLEQSL----TSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKT 230 (700)
Q Consensus 156 ~rCI~C~RCVR~c~Ev~-g~~~lg~~~RG~~~~i~~~~~~~~----~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~ 230 (700)
.+|= .-|.++|--+- |...+.+ ....++++ -|.=||-||--||-+|++-= .=|-||.+-
T Consensus 15 ~kc~--~ec~~~cp~~~~g~~~i~~---------~~~~~~~~i~e~lc~gcgicvkkcpf~ai~ii-----nlp~~l~~~ 78 (590)
T PRK13409 15 KKCN--YECIKYCPVVRTGEETIVI---------DEEDGKPVISEELCIGCGICVKKCPFDAISIV-----NLPEELEED 78 (590)
T ss_pred CCHH--HHHHHHCCCCCCCCEEEEE---------CCCCCCCEEEHHHCCCCCCCCCCCCCCEEEEE-----CCHHHHCCC
T ss_conf 5246--7888759985678616997---------07889615505335665421144883005761-----483675777
Q ss_pred EECCCCCCCCCEEE--EECCCCEEEEEECC
Q ss_conf 20121168864366--75159999885247
Q gi|254780859|r 231 DSIDVMDALGSAIR--IDARGCEVMRILPR 258 (700)
Q Consensus 231 ~SvC~~C~~GC~i~--v~v~~g~i~rv~~~ 258 (700)
.+. .|-.-|-.+. -.-|.|+++.+.|.
T Consensus 79 ~~h-~yg~n~f~l~~lp~p~~G~v~GLiG~ 107 (590)
T PRK13409 79 CVH-RYGPNGFKLYGLPIPKEGKVTGILGP 107 (590)
T ss_pred CEE-ECCCCCEEEECCCCCCCCCEEEEECC
T ss_conf 605-41677435607898999878998899
No 285
>PRK08273 pyruvate decarboxylase; Provisional
Probab=70.27 E-value=7.3 Score=18.01 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCC-CCCHHHHH
Q ss_conf 14566888752013445314785043232355547889863687724202334446643----40125467-78787740
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIF-NPTIQGIE 374 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~-~~~i~die 374 (700)
=+++++.+++.|++.+. ...++|..+.. ..-.+..|+..+|.+-+.+......++.. .|...... ..+.+-++
T Consensus 194 ~~~~l~~aa~~L~~a~r-PvIl~G~Ga~~-A~~el~~lAe~l~aPV~tt~~gkg~ip~dhPl~~G~~G~~g~~~~~~~~~ 271 (597)
T PRK08273 194 YDADLRRAADVLNAGRK-VAILVGAGALG-ATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMT 271 (597)
T ss_pred CHHHHHHHHHHHHCCCC-CEEEECHHHHH-HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999963899-88996877875-89999999998598657700246655567853457675667499999985
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 18579997385322
Q gi|254780859|r 375 EADAMLIIGSNPRL 388 (700)
Q Consensus 375 ~ad~illiG~Np~~ 388 (700)
++|++|++|++..+
T Consensus 272 ~aDllL~iGt~~~~ 285 (597)
T PRK08273 272 ECDTLLMVGSSFPY 285 (597)
T ss_pred CCCEEEEEECCCCC
T ss_conf 58859999478982
No 286
>TIGR01683 thiS thiamine biosynthesis protein ThiS; InterPro: IPR010035 This entry identifies the ThiS family, which are thiamine-biosynthesis proteins related to MoaD (IPR010034 from INTERPRO). MoaD is a molybdenum cofactor biosynthesis protein. Both ThiS and MoaD proteins are involved in sulphur transfer..
Probab=69.43 E-value=4.6 Score=19.49 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=30.9
Q ss_pred EEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 999999999688875889999868954612127999645600047999717
Q gi|254780859|r 7 LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKG 57 (700)
Q Consensus 7 ~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~ 57 (700)
|+|||+++++++++|+-+-..+.+++-+ |.+.||+.+
T Consensus 1 i~vNG~~~~~~~~~t~~~LL~~~~~~~~--------------~~vave~N~ 37 (65)
T TIGR01683 1 ITVNGEPVEVEDGTTLAALLESLGLDPK--------------RRVAVEVNG 37 (65)
T ss_pred CEECCCCEEECCCCCHHHHHHHHCCCCC--------------CEEEEEECC
T ss_conf 9569912462588887898886075358--------------748998698
No 287
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=69.06 E-value=7.7 Score=17.84 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 04323235554788986368772420233444664340125467787877401857999738532257310257789997
Q gi|254780859|r 323 GDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWR 402 (700)
Q Consensus 323 g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~ 402 (700)
|-+.-+++.=.|.++++.-|+.-.|-+-....+. +..+....+.+ ++.++++|+|-.---=-....++++.+
T Consensus 103 glh~~ls~dp~~~k~A~~~G~rl~dvR~p~~~l~-------~~~tG~~~k~~-a~~V~vvGTd~~vGKrTTa~~L~~~~~ 174 (339)
T COG3367 103 GLHSFLSDDPEFVKLAERTGVRLDDVRKPPLDLE-------YLCTGMARKVD-AKVVLVVGTDCAVGKRTTALELREAAR 174 (339)
T ss_pred HHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCHH-------HHCCCCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 5577761186899999871975676226742033-------43047511467-768999335632104388999999999
Q ss_pred CCCCEEECCC--CCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHH--HHHHHHHCCC
Q ss_conf 5997066168--501223344304898678888826877889998723531023--5443321047
Q gi|254780859|r 403 RGNFPIAVIG--DVGELRYKYEHLGNGSEALADLVSGQHPFFKKLQEATRPLII--VGQGALRASD 464 (700)
Q Consensus 403 ~g~~~I~vi~--~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~~l~~a~~~~ii--~G~g~~~~~~ 464 (700)
..++....++ +.+.+..... +.-+.- ..|+++|.-+-+....+.+++=++ =|+|.+.|+-
T Consensus 175 e~G~~a~fvaTgqtgil~~~~g-vvvdav-~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~ 238 (339)
T COG3367 175 EEGIKAGFVATGQTGILIADDG-VVVDAV-VMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPA 238 (339)
T ss_pred HHCCCCCEEECCCEEEEEECCC-EEECCH-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 7098631576076046885274-675303-688898888888887652289879990653434777
No 288
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=68.97 E-value=7.8 Score=17.83 Aligned_cols=85 Identities=9% Similarity=0.141 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCH----HHHCCCCCCC-CCHHHHHC
Q ss_conf 456688875201344531478504323235554788986368772420233444664----3401254677-87877401
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDP----SYGRASYIFN-PTIQGIEE 375 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~----~~~~~~~~~~-~~i~die~ 375 (700)
+++++.+++.|++.+.- ..++|..... ..-.+.+|+..+|.+-+.+......++. ..|....... ...+-+++
T Consensus 188 ~~~i~~a~~~L~~AkrP-vii~G~G~~~-a~~el~~lae~l~~PV~tt~~gkg~i~~dhpl~~G~~G~~g~~~a~~~l~~ 265 (578)
T PRK06546 188 PEEVRALADAINDAKKV-TLFCGAGVAG-AHAEVLELAEKIKAPIGHALRGKDWIQYDNPFDVGMSGLLGYGAAAEAMND 265 (578)
T ss_pred HHHHHHHHHHHHHCCCC-EEEECCCCCC-HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99999999998507798-8993777412-799999999987988898623346677888300565767686899986515
Q ss_pred CCEEEEECCCCC
Q ss_conf 857999738532
Q gi|254780859|r 376 ADAMLIIGSNPR 387 (700)
Q Consensus 376 ad~illiG~Np~ 387 (700)
+|++|++|++..
T Consensus 266 aDlvl~iGt~~~ 277 (578)
T PRK06546 266 ADLLILLGTDFP 277 (578)
T ss_pred CCEEEEECCCCC
T ss_conf 787999816888
No 289
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=68.77 E-value=7.8 Score=17.80 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=37.4
Q ss_pred EEEECCEEEEECCCC-CHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCCC
Q ss_conf 999999999968887-588999986895461212799964560004799971798-870200265664566
Q gi|254780859|r 6 KLKVDGIEIEVPSGF-TILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIA-SKPQASCAMNVSDLR 74 (700)
Q Consensus 6 ~~~Idg~~v~v~~g~-til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~-~k~~~sC~t~v~~gm 74 (700)
+|+|||++.+++++. ||-+-....+++ =|...||+.+.= ||- .-=+|+++||-
T Consensus 2 ~I~vNGe~~~~~~~~~tv~~Ll~~l~l~---------------~~~vaVE~N~eIvpr~-~~~~~~L~~GD 56 (67)
T PRK07696 2 NLKINGNQIEVPESVKTVAELLTHLELD---------------NRIVVVERNKDILQKD-DHTDTSVFDGD 56 (67)
T ss_pred EEEECCEEEECCCCCCCHHHHHHHCCCC---------------CCEEEEEECCEECCHH-HHCCEECCCCC
T ss_conf 8999998888588654599999866999---------------8669999798575768-80944779999
No 290
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=68.64 E-value=7.9 Score=17.78 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCH----HHHCCCCCCC-CCHHHHHC
Q ss_conf 456688875201344531478504323235554788986368772420233444664----3401254677-87877401
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDP----SYGRASYIFN-PTIQGIEE 375 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~----~~~~~~~~~~-~~i~die~ 375 (700)
++.++.+++.|++.+. ...++|.... ...-.+.+|+..+|.+-+.+......++. ..|....... ....-+++
T Consensus 188 ~~~l~~aa~~L~~A~r-Pvi~~G~G~~-~a~~~l~~lAe~lg~PV~tt~~gkg~i~~~hPl~~G~~G~~g~~~~~~~l~~ 265 (574)
T PRK09124 188 EEELDKLAALLNGSKA-ITLLCGSGCA-GAHDELVALADTLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMN 265 (574)
T ss_pred HHHHHHHHHHHHCCCC-CEEEECCCHH-HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 9999999999855799-7899791032-3799999999985998896056777888768511465666787899999843
Q ss_pred CCEEEEECCCCC
Q ss_conf 857999738532
Q gi|254780859|r 376 ADAMLIIGSNPR 387 (700)
Q Consensus 376 ad~illiG~Np~ 387 (700)
+|++|++|++..
T Consensus 266 aDlvl~lGt~~~ 277 (574)
T PRK09124 266 CDTLLMLGTDFP 277 (574)
T ss_pred CCEEEEECCCCC
T ss_conf 881999736777
No 291
>PRK07524 hypothetical protein; Provisional
Probab=68.24 E-value=8 Score=17.72 Aligned_cols=87 Identities=18% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHH--HCCCCCCCCCH-HHHHCC
Q ss_conf 145668887520134453147850432323555478898636877242023344466434--01254677878-774018
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSY--GRASYIFNPTI-QGIEEA 376 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~--~~~~~~~~~~i-~die~a 376 (700)
-.++++.+++.|.+.+.-. .++|.... ...-.+++|++.+|.+-+.+......++... ..+........ +-++++
T Consensus 187 ~~~~l~~~~~~l~~akrPv-ii~G~g~~-~~~~~l~~lae~l~~Pv~~t~~~kg~~~~~hpl~~G~~~~~~~~~~~~~~a 264 (534)
T PRK07524 187 APAALAQAAERLAAARRPL-ILAGGGAL-AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAEA 264 (534)
T ss_pred CHHHHHHHHHHHHHCCCCE-EECCCCCC-CHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 9999999999998465976-86275514-669999999998497715023567666567865557655659999999738
Q ss_pred CEEEEECCCCCC
Q ss_conf 579997385322
Q gi|254780859|r 377 DAMLIIGSNPRL 388 (700)
Q Consensus 377 d~illiG~Np~~ 388 (700)
|+||.+|+.+.+
T Consensus 265 Dlvl~lG~~l~~ 276 (534)
T PRK07524 265 DVVLAVGTELGE 276 (534)
T ss_pred CEEEEECCCCCC
T ss_conf 989995440366
No 292
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.87 E-value=7.4 Score=18.00 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 7407999999999807
Q gi|254780859|r 592 AKEDWEIICALADELK 607 (700)
Q Consensus 592 ak~dw~Il~~La~~LG 607 (700)
-++-++..|+||+|++
T Consensus 155 Q~qHleLtRDiA~rfn 170 (314)
T COG0180 155 QDQHLELTRDIARRFN 170 (314)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 5399999999999987
No 293
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=66.23 E-value=1.5 Score=23.01 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=16.2
Q ss_pred CCCCCCCCCEEECCCCCCCCCC
Q ss_conf 5556546622201212101223
Q gi|254780859|r 195 SLTSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 195 ~~~~e~~Gncvd~CPvGALt~k 216 (700)
+.-|..||.|+.+||. ++|..
T Consensus 4 ~~~c~~Cg~C~a~cp~-~i~~~ 24 (332)
T COG1035 4 AGLCTGCGTCAAVCPY-AITER 24 (332)
T ss_pred CCCCCCCHHHHHHCCC-EEEEE
T ss_conf 7635642554741875-28971
No 294
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=66.11 E-value=8.8 Score=17.44 Aligned_cols=94 Identities=18% Similarity=0.096 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHHHCCCCCEECCCCCCCCCHHH--HCCCCCCCCC---H-
Q ss_conf 1456688875201344531478504323---23555478898636877242023344466434--0125467787---8-
Q gi|254780859|r 300 WDYALKAIKSAVLSSDVKLGAVVGDLSS---VEEIYALKLLMQSLGCENFDCRQNGEYLDPSY--GRASYIFNPT---I- 370 (700)
Q Consensus 300 WdeAl~~ia~~L~~~~~~~g~~~g~~~t---~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~--~~~~~~~~~~---i- 370 (700)
-.|+++.+++.+...+. ...+++...+ .+. .+++|+++.+-+.+-.-..-..++++. ..+-|.+..+ +
T Consensus 195 ~~e~i~~i~~lI~~ak~-p~ILad~~~~r~~~~~--~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vr 271 (557)
T COG3961 195 LSEVIDTIAELINKAKK-PVILADALVSRFGLEK--ELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVR 271 (557)
T ss_pred HHHHHHHHHHHHHCCCC-CEEECCHHHHHHHHHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHH
T ss_conf 99999999999845688-6785142331222699--99999984089769942465455666887003775434878799
Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 77401857999738532257310257
Q gi|254780859|r 371 QGIEEADAMLIIGSNPRLEAAVLNAR 396 (700)
Q Consensus 371 ~die~ad~illiG~Np~~~~Pvl~~r 396 (700)
+-+|.||+||.+|.-..+-....++.
T Consensus 272 e~vE~aD~il~iG~~ltD~~Tg~Ft~ 297 (557)
T COG3961 272 EAVESADLILTIGVLLTDFNTGGFTY 297 (557)
T ss_pred HHHHCCCEEEEECEEEEECCCCCEEE
T ss_conf 98623787999530776304551366
No 295
>PRK07064 hypothetical protein; Provisional
Probab=65.84 E-value=8.9 Score=17.40 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH--CCCCCCCCCH-HHHHCCC
Q ss_conf 456688875201344531478504323235554788986368772420233444664340--1254677878-7740185
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG--RASYIFNPTI-QGIEEAD 377 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~--~~~~~~~~~i-~die~ad 377 (700)
+++++.+++.|++.+.-+ .++|.... .....+++|.+ +|.+-+.+......++...- .+.+...... +-++++|
T Consensus 190 ~~~i~~~~~~L~~AkrPv-Ii~G~g~~-~a~~~l~~lae-l~iPv~tt~~gkg~i~e~hpl~~G~~~~~~~~~~~l~~aD 266 (544)
T PRK07064 190 AAAVAELAERLAGARRPL-LWLGGGAR-HARAEVERLVD-LGFGVVTSTQGRGVLPEDHPASLGAFNNSAAVEALYKTCD 266 (544)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECHHHH-HHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 999999999987178978-99774255-55899999987-5996997212276665666555676567599999984178
Q ss_pred EEEEECCCCCCCC
Q ss_conf 7999738532257
Q gi|254780859|r 378 AMLIIGSNPRLEA 390 (700)
Q Consensus 378 ~illiG~Np~~~~ 390 (700)
+||++|+.+.+..
T Consensus 267 lvl~iG~~l~~~~ 279 (544)
T PRK07064 267 LLLVVGSRLRGNE 279 (544)
T ss_pred EEEEECCCCCCCC
T ss_conf 7999625346676
No 296
>TIGR02630 xylose_isom_A xylose isomerase; InterPro: IPR013452 Xylose isomerase (5.3.1.5 from EC) is an enzyme which interconverts D-xylose and D-xylulose.; GO: 0009045 xylose isomerase activity.
Probab=65.65 E-value=2.5 Score=21.43 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHH--------HHHCCCEEEEECC
Q ss_conf 78898636877242023344466434012546778787--------7401857999738
Q gi|254780859|r 334 LKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQ--------GIEEADAMLIIGS 384 (700)
Q Consensus 334 ~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~--------die~ad~illiG~ 384 (700)
+=.|++.||.+.+++|=+...-.-...+.. +.-++ -.+.+.+=||||+
T Consensus 84 ~FEf~~KLgv~YyCFHD~D~aPEG~~L~E~---~~nLd~~vd~~~~kq~~tg~KLLWGT 139 (437)
T TIGR02630 84 AFEFFEKLGVPYYCFHDVDIAPEGASLKET---NANLDEIVDLIKEKQKETGVKLLWGT 139 (437)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHCCCEECCCC
T ss_conf 999998718980554461025788778999---99999999999999975488323365
No 297
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=65.46 E-value=9 Score=17.35 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH--CCC--CCCC-CCH-H
Q ss_conf 414566888752013445314785043232-35554788986368772420233444664340--125--4677-878-7
Q gi|254780859|r 299 SWDYALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPSYG--RAS--YIFN-PTI-Q 371 (700)
Q Consensus 299 SWdeAl~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~--~~~--~~~~-~~i-~ 371 (700)
+.....+.+.+.|+..+. ...++|..... ...-.+.+|+..+|.+-+.+......++...- .+. +... ... +
T Consensus 190 ~~~~~~~~a~~ll~~a~r-pvil~G~g~~~~~a~~~l~~lae~~~iPv~tt~~gkg~~~e~hp~~~G~~~g~~~~~~~~~ 268 (539)
T TIGR03393 190 ALRAFRDAAENKLAMAKR-VSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKE 268 (539)
T ss_pred HHHHHHHHHHHHHHHCCC-CEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 679999999999960799-7999665860101799999999984897587246678987657765555556556699999
Q ss_pred HHHCCCEEEEECCCCCCC
Q ss_conf 740185799973853225
Q gi|254780859|r 372 GIEEADAMLIIGSNPRLE 389 (700)
Q Consensus 372 die~ad~illiG~Np~~~ 389 (700)
-++++|+||++|+.+.+.
T Consensus 269 ~l~~aDlvl~iG~rl~~~ 286 (539)
T TIGR03393 269 AIEGADAVICVGVRFTDT 286 (539)
T ss_pred HHHCCCEEEEEECCCCCC
T ss_conf 996589799993676654
No 298
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=64.92 E-value=7.2 Score=18.08 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.3
Q ss_pred EEECCEEEEECCCCCHHHHHHHCCCC
Q ss_conf 99999999968887588999986895
Q gi|254780859|r 7 LKVDGIEIEVPSGFTILQACELAGAE 32 (700)
Q Consensus 7 ~~Idg~~v~v~~g~til~a~~~~gi~ 32 (700)
+.+||+++++|+|.||=||.+..|-.
T Consensus 1 V~vnG~~~~vp~GsTl~D~l~~~~~~ 26 (503)
T TIGR03268 1 VKVNGEEVTVPDGSTVRDALKASDAP 26 (503)
T ss_pred CEECCEEEECCCCCCHHHHHHHCCCC
T ss_conf 95799786248998188888643886
No 299
>PRK00969 hypothetical protein; Provisional
Probab=64.42 E-value=8 Score=17.73 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=29.4
Q ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 49999999999688875889999868954612127999645600047999
Q gi|254780859|r 5 VKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVE 54 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVe 54 (700)
+++.+||+++++|+|.||=||.+..+.. |. -.|=.|++.
T Consensus 1 m~V~vng~~~~v~~GsTl~D~l~~~~~~-----y~------~gt~I~iIk 39 (508)
T PRK00969 1 MSVHVNGEEVTVPEGSTLGDALKASYAP-----YI------EGTNIGIIK 39 (508)
T ss_pred CEEEECCEEEECCCCCCHHHHHHCCCCC-----CC------CCCEEEEEE
T ss_conf 9899899896348998288876324887-----57------997799994
No 300
>pfam03658 UPF0125 Uncharacterized protein family (UPF0125).
Probab=64.19 E-value=6.5 Score=18.37 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=29.8
Q ss_pred EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99996888758899998689546121279996456000479997179887020026566456
Q gi|254780859|r 12 IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDL 73 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~g 73 (700)
.+++|++|+|+.||.+..||.- .+|.+.... +-|-|=| |++. =.+++.+|
T Consensus 16 ~~l~v~~GtTv~~Ai~~Sgi~~----~fPeidl~~----~~vGIfg---k~v~-l~~~L~~G 65 (83)
T pfam03658 16 KSVDVAEGTTVREAILQSGLLR----QFPDIDLSK----NKVGIFG---KPVK-LDDPLKDG 65 (83)
T ss_pred EEEECCCCCCHHHHHHHCCCHH----HCCCCCCCC----CCEEEEC---CCCC-CCCCCCCC
T ss_conf 9998699894999999759565----696655564----6364688---4738-87707999
No 301
>PRK08266 hypothetical protein; Provisional
Probab=64.09 E-value=9.6 Score=17.17 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEE
Q ss_conf 45668887520134453147850432323555478898636877242023344466434012546778787740185799
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAML 380 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~il 380 (700)
.++++.+++.|.+.+.-. .++|... .+..-.+.+|++.+|.+-+.+......++...-.... .....+-++++|+||
T Consensus 189 ~~~i~~~~~~l~~a~rPv-ii~G~g~-~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hpl~~g-~~~~~~~l~~aDlvl 265 (531)
T PRK08266 189 PDAIAAAAALIAAARNPM-IFVGGGA-IDAGDEILELAEMLQAPVVAFRSGRGIVSDAHPLGLT-FAAAYALWPHTDVVI 265 (531)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHCCCCEEE
T ss_conf 999999999997188977-8768317-5799999999998499821143457768999854467-688886542588999
Q ss_pred EECCCCC
Q ss_conf 9738532
Q gi|254780859|r 381 IIGSNPR 387 (700)
Q Consensus 381 liG~Np~ 387 (700)
.+|+...
T Consensus 266 ~~G~~~~ 272 (531)
T PRK08266 266 GIGSRME 272 (531)
T ss_pred EECCCCC
T ss_conf 9567632
No 302
>PRK01777 hypothetical protein; Validated
Probab=63.93 E-value=6.6 Score=18.32 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.9
Q ss_pred EEEEECCCCCHHHHHHHCCCC
Q ss_conf 999968887588999986895
Q gi|254780859|r 12 IEIEVPSGFTILQACELAGAE 32 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~gi~ 32 (700)
.+++|++|+|+.||.+..||.
T Consensus 19 ~~l~v~~GtTv~~Ai~~Sgi~ 39 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLL 39 (95)
T ss_pred EEEECCCCCCHHHHHHHCCCH
T ss_conf 999869999399999982965
No 303
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=63.43 E-value=9.5 Score=17.20 Aligned_cols=82 Identities=10% Similarity=0.018 Sum_probs=56.1
Q ss_pred ECCCC-----CCCCCHHHHCCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 13554-----2210000000011011002222023241456688875201344531478504323235554788986368
Q gi|254780859|r 268 ISDKT-----RFIWDGLKVQRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLG 342 (700)
Q Consensus 268 lC~KG-----Rf~~d~~~~dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lG 342 (700)
.|.|| +|+-+-+|.+|-.-|--+..-..+.+.=|+.++....-.+-....+.++.||..+-++.-..+.+-.++.
T Consensus 11 ~~~~~e~lAf~~Av~~iN~~~~~l~~t~l~~di~~v~~~dsf~~skkvC~ll~~GV~AIFGPss~~~s~~~v~siC~al~ 90 (333)
T cd06394 11 ECGRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSPASSSIVSHICGEKE 90 (333)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 05668999999999987317334788559998898388762299999998786385799899996657999999844679
Q ss_pred CCCEECC
Q ss_conf 7724202
Q gi|254780859|r 343 CENFDCR 349 (700)
Q Consensus 343 t~nid~~ 349 (700)
.|++.++
T Consensus 91 IPhi~~~ 97 (333)
T cd06394 91 IPHFKVG 97 (333)
T ss_pred CCEEECC
T ss_conf 9808615
No 304
>TIGR02060 aprB adenylylsulfate reductase, beta subunit; InterPro: IPR011802 During dissimilatory sulphate reduction and sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the beta subunit of APS reductase, which shares a common evolutionary origin with other iron-sulphur cluster-binding proteins..
Probab=63.26 E-value=2.8 Score=21.02 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=40.9
Q ss_pred CCHHHCCCCC-----HHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 0643290100-----23645432068740033306664126620587555654662220121210122332333
Q gi|254780859|r 153 TVMNRCIHCT-----RCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFT 221 (700)
Q Consensus 153 ~d~~rCI~C~-----RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~ 221 (700)
.+|+||=-|. .|+-.|-. ....|+. ++.-.|-.+|-.|=-|=.||-+||-||++-++|.--
T Consensus 5 V~~~kCDGC~~~e~t~C~~ICP~--DlM~lD~------~~~kAYN~EP~~CWECYSCVK~CP~~AI~vRgY~Df 70 (138)
T TIGR02060 5 VDPTKCDGCKALEKTACVYICPN--DLMILDT------EKMKAYNREPDMCWECYSCVKICPQGAIDVRGYADF 70 (138)
T ss_pred CCCCCCCCCCCCCCCCEEECCCH--HHHHHCC------HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 47845667787663111110830--2223050------245541687666312100012188874112664030
No 305
>PRK08156 surface presentation of antigens protein SpaS; Validated
Probab=63.08 E-value=10 Score=17.05 Aligned_cols=16 Identities=6% Similarity=0.191 Sum_probs=8.8
Q ss_pred HHHHCCEEECCCCCCC
Q ss_conf 8874557704786202
Q gi|254780859|r 552 GAQSADVILPGAAYTE 567 (700)
Q Consensus 552 tA~~ADVVLP~a~~~E 567 (700)
....||||+=-.|++=
T Consensus 247 ~Vp~AdVVItNPTH~A 262 (367)
T PRK08156 247 DIENSRLIVANPTHIA 262 (367)
T ss_pred CCCCCCEEEECCCHHH
T ss_conf 4899998998856220
No 306
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=62.23 E-value=10 Score=16.94 Aligned_cols=44 Identities=20% Similarity=0.070 Sum_probs=25.0
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 8774018579997385322573102577899975997066168501
Q gi|254780859|r 370 IQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVG 415 (700)
Q Consensus 370 i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~ 415 (700)
.++++++|++|++|+..... |. +..++.|.++|+..|.+....+
T Consensus 199 ~~~~~~~DlllviGTSl~V~-Pa-a~l~~~a~~~g~~vviIN~~~T 242 (260)
T cd01409 199 AARLAEADALLVLGSSLMVY-SG-YRFVLAAAEAGLPIAIVNIGPT 242 (260)
T ss_pred HHHHHCCCEEEEECCCCCCC-CH-HHHHHHHHHCCCCEEEECCCCC
T ss_conf 99997099899983785124-36-7899999987993999899999
No 307
>KOG0430 consensus
Probab=62.07 E-value=10 Score=16.92 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=60.9
Q ss_pred CEEEEECCEEEEE---CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC------CCCCCCCCCCCCCC
Q ss_conf 0499999999996---88875889999868954612127999645600047999717988------70200265664566
Q gi|254780859|r 4 MVKLKVDGIEIEV---PSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS------KPQASCAMNVSDLR 74 (700)
Q Consensus 4 mv~~~Idg~~v~v---~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~------k~~~sC~t~v~~gm 74 (700)
=+.+.|||+.+++ +|.+|++...+..= .|+--+-.=--|.|--|.|-+.+..| ..+-||-||+-.
T Consensus 2 ~l~F~VNG~~~~~~~vdP~~TL~~fLR~k~----~ltgtKlgC~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s-- 75 (1257)
T KOG0430 2 ELVFAINGKRVEVELLPPDLTLNTFLREKL----GLTGTKLGCGEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNS-- 75 (1257)
T ss_pred CEEEEECCEEEEEECCCCCHHHHHHHHHHC----CCCCEEECCCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHCCC--
T ss_conf 649997787856623895235999999745----87623323589986635999830477632689550122433245--
Q ss_pred CCCCCCCCEEEECCHHHHHHH---HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 376668537981998999999---999999982789988778887
Q gi|254780859|r 75 AGPNGELPEVFTKSSMVKKAR---AGVMEFLLINHPLDCPICDQG 116 (700)
Q Consensus 75 ~~~~~~g~~v~t~s~~v~~~r---~~vle~ll~nHpldCp~Cd~~ 116 (700)
-.|+.|.|. |-+=..| .-+=|.|---|-..|-.|-.|
T Consensus 76 ----~~g~~vtT~-EGlGn~~~g~HPiq~RlA~~hgsQCGFCtPG 115 (1257)
T KOG0430 76 ----VHGLEVTTS-EGLGNRRDGYHPIQERLAKMHGSQCGFCTPG 115 (1257)
T ss_pred ----CCCEEEEEE-ECCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf ----565479962-0466665673717777751357766688875
No 308
>pfam03990 DUF348 Domain of unknown function (DUF348). This domain normally occurs as tandem repeats; however it is found as a single copy in the S. cerevisiae DNA-binding nuclear protein YCR593. This protein is involved in sporulation part of the SET3C complex, which is required to repress early/middle sporulation genes during meiosis. The bacterial proteins are likely to be involved in a cell wall function as they are found in conjunction with the pfam07501 domain, which is involved in various cell surface processes.
Probab=61.52 E-value=11 Score=16.86 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=29.6
Q ss_pred EEEEECCEEEEE-CCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 499999999996-88875889999868954612127999645
Q gi|254780859|r 5 VKLKVDGIEIEV-PSGFTILQACELAGAEIPRFCFHERLSIA 45 (700)
Q Consensus 5 v~~~Idg~~v~v-~~g~til~a~~~~gi~IP~~Cy~~~l~~~ 45 (700)
|+|.|||++.++ -...||=++.+.+||.+ =-|++++|.
T Consensus 2 Vtv~vdG~~~~v~T~a~tV~~~L~~~gi~l---~~~D~V~p~ 40 (43)
T pfam03990 2 VTLTVDGKEKTVWTTASTVGDLLEEAGITL---GEEDKVSPS 40 (43)
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHCCCCC---CCCCEECCC
T ss_conf 899989999999987778999998869976---877756479
No 309
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=61.31 E-value=3.8 Score=20.06 Aligned_cols=119 Identities=21% Similarity=0.294 Sum_probs=59.4
Q ss_pred CCHHHHHHHHCC-CCCCEEEECCCCCCEEEECCCCCCC----CCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 002364543206-8740033306664126620587555----65466222012121012233233344430235220121
Q gi|254780859|r 161 CTRCVRFITEVA-GVSELGLVGRGENAEITTYLEQSLT----SEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDV 235 (700)
Q Consensus 161 C~RCVR~c~Ev~-g~~~lg~~~RG~~~~i~~~~~~~~~----~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~ 235 (700)
+.-|.++|--+- |...+. |....++|+= |.=||-||.-||-+|+.-= .=|-||+.-.+ -.
T Consensus 19 ~~eC~~yCP~vrtg~~~I~---------i~~~~gkpvIsE~lCiGCGICvkkCPF~AI~Iv-----nLP~eLe~e~v-HR 83 (591)
T COG1245 19 GYECIKYCPVVRTGKETIE---------IDEDTGKPVISEELCIGCGICVKKCPFDAISIV-----NLPEELEEEVV-HR 83 (591)
T ss_pred CHHHHHCCCCCCCCCEEEE---------ECCCCCCCEEEHHHHCCCHHHHCCCCCCEEEEE-----CCCHHHCCCCE-EE
T ss_conf 2114530998457872699---------547779843676442320343134886617884-----38346434430-44
Q ss_pred CCCCCCEEE--EECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHCCCCHHHEECC-CCE-EECCHHHHHHHHHH
Q ss_conf 168864366--751599998852478887777411355422100000000110110022-220-23241456688875
Q gi|254780859|r 236 MDALGSAIR--IDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARIN-GRL-KPVSWDYALKAIKS 309 (700)
Q Consensus 236 ~C~~GC~i~--v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~~-g~~-~~iSWdeAl~~ia~ 309 (700)
|-.-|=.+. --.|.|+|+.+.|... + | |. ..=+|..--++-| |++ .+-||||.++..+.
T Consensus 84 Yg~NgFkL~~LP~pr~G~V~GilG~NG--i--G----Ks-------TalkILaGel~PNLG~~~~pp~wdeVi~~FrG 146 (591)
T COG1245 84 YGVNGFKLYRLPTPRPGKVVGILGPNG--I--G----KS-------TALKILAGELKPNLGRYEDPPSWDEVIKRFRG 146 (591)
T ss_pred CCCCCEEEECCCCCCCCCEEEEECCCC--C--C----HH-------HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 057743784578788884799876897--6--5----78-------89999747607788888899898999998612
No 310
>PRK07586 hypothetical protein; Validated
Probab=61.28 E-value=11 Score=16.83 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHH-HHHHHHHHHHCCCCCEE-CCCC----CCCCCHHHHCCCCCCCCCHHHHH
Q ss_conf 456688875201344531478504323235-55478898636877242-0233----44466434012546778787740
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEE-IYALKLLMQSLGCENFD-CRQN----GEYLDPSYGRASYIFNPTIQGIE 374 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee-~y~~k~l~~~lGt~nid-~~~~----~~~~~~~~~~~~~~~~~~i~die 374 (700)
+++++.+++.|++.+.-. .++|......+ .-++.+|...+|.+-+. .... ....... ....+........+.
T Consensus 184 ~~~v~~a~~~L~~A~rPv-I~aG~g~~~~~a~~~~~~lae~~g~pv~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~~~l~ 261 (514)
T PRK07586 184 PAAVEAAAKALRSGEPTL-LLLGGDALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAV-ERLPYFAEQALAQLA 261 (514)
T ss_pred HHHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CCCCCCHHHHHHHHH
T ss_conf 999999999985179958-996674356679999999999858967886136544478998886-544330999999996
Q ss_pred CCCEEEEECCCC
Q ss_conf 185799973853
Q gi|254780859|r 375 EADAMLIIGSNP 386 (700)
Q Consensus 375 ~ad~illiG~Np 386 (700)
++|++|++|++.
T Consensus 262 ~~D~vl~vG~~~ 273 (514)
T PRK07586 262 GFRHLVLVGARA 273 (514)
T ss_pred CCCEEEEECCCC
T ss_conf 368278735668
No 311
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=60.71 E-value=7 Score=18.14 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=37.6
Q ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 4999999999968887588999986895461212799964560004799971798870200265664566
Q gi|254780859|r 5 VKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLR 74 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm 74 (700)
.-++=||..++.|+|.|.+|.|.+.+-++-+-|- -+ +|.| ++++ =.++.++|=
T Consensus 2 ~vftP~G~~~~lP~GaT~~D~A~~Iht~lg~~~~-----------~a--~Vng---~~~~-l~~~L~~gd 54 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKIHTDLGKGFI-----------GA--LVNG---QLVD-LSYTLQDGD 54 (60)
T ss_pred EEECCCCCEEECCCCCCHHHHHHHHCCCHHHEEE-----------EE--EECC---EECC-CCCCCCCCC
T ss_conf 9989999879889989899999987636154599-----------99--9999---9965-166999999
No 312
>TIGR01660 narH nitrate reductase, beta subunit; InterPro: IPR006547 The nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and are b-type cytochromes that receive electrons from the quinone pool and transfers them to the beta subunit. The sequences in this family are the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for Gram-positive and Gram-negative bacteria. A few thermophiles and archaea also match the model. A number of the sequences in this set are experimentally characterised, these include: E.Coli NarH (P11349 from SWISSPROT) and NarY (P19318 from SWISSPROT) , , P42176 from SWISSPROT from Bacillus subtilis, and related proteins from Psuedomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans.; GO: 0008940 nitrate reductase activity, 0042126 nitrate metabolic process, 0009325 nitrate reductase complex.
Probab=56.41 E-value=4.1 Score=19.84 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=12.5
Q ss_pred CCHHHCCCCCHHHHHHHHCC
Q ss_conf 06432901002364543206
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVA 172 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~ 172 (700)
++.++||=|--|-=.|..|=
T Consensus 11 lNLDKCIGCHTCSvTCKNvW 30 (495)
T TIGR01660 11 LNLDKCIGCHTCSVTCKNVW 30 (495)
T ss_pred EECCCCCCCCCCCEECCCCC
T ss_conf 51344235523432114521
No 313
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=55.45 E-value=13 Score=16.16 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=24.9
Q ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCC
Q ss_conf 4999999999968887588999986895
Q gi|254780859|r 5 VKLKVDGIEIEVPSGFTILQACELAGAE 32 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~til~a~~~~gi~ 32 (700)
.+|+|||++-++++|+||=+..+..|++
T Consensus 1 M~ItvNGE~r~~~~~~Tv~~Ll~~L~l~ 28 (327)
T PRK11840 1 MRIRLNGEPREVPAGLTIEALLAELGLD 28 (327)
T ss_pred CEEEECCEEEECCCCCCHHHHHHHCCCC
T ss_conf 9799999864358878699999974899
No 314
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=55.26 E-value=13 Score=16.14 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHHHHHHHHCCCCCEECCCCCCCCCHH----HHCCCCCCCCCH-HHHHCC
Q ss_conf 66888752013445314785043232-355547889863687724202334446643----401254677878-774018
Q gi|254780859|r 303 ALKAIKSAVLSSDVKLGAVVGDLSSV-EEIYALKLLMQSLGCENFDCRQNGEYLDPS----YGRASYIFNPTI-QGIEEA 376 (700)
Q Consensus 303 Al~~ia~~L~~~~~~~g~~~g~~~t~-Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~----~~~~~~~~~~~i-~die~a 376 (700)
+++.+++.|++.+.-. .++|..... ...-.+.+|+..+|.+-+.+......++.. .|......+... .-+.++
T Consensus 204 ~i~~~~~~L~~AkrPv-Il~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hpl~~G~~g~~g~~~a~~~~~~a 282 (571)
T PRK07710 204 QIRKLVEAISVAKKPL-ILAGAGVLHAKASKELTSFARQYEIPVVHTLLGLGGFPADDELFLGMGGMHGSYTANMALYEC 282 (571)
T ss_pred HHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 9999999997189978-998688462569999999999878999982455787899996658877766768999997369
Q ss_pred CEEEEECCCCCCC
Q ss_conf 5799973853225
Q gi|254780859|r 377 DAMLIIGSNPRLE 389 (700)
Q Consensus 377 d~illiG~Np~~~ 389 (700)
|+||.+|+...+.
T Consensus 283 Dlvl~lG~~~~~~ 295 (571)
T PRK07710 283 DLLINIGARFDDR 295 (571)
T ss_pred CEEEEECCCCCCC
T ss_conf 8799935656765
No 315
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=54.68 E-value=14 Score=16.07 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=62.0
Q ss_pred EEEEECCEEEEECCCCCHHHHHHHCCCCCC--CCCCCCCCCCCCEEE---EEEEEECCC--CCCC-CCCCCCCCCCCCCC
Q ss_conf 499999999996888758899998689546--121279996456000---479997179--8870-20026566456637
Q gi|254780859|r 5 VKLKVDGIEIEVPSGFTILQACELAGAEIP--RFCFHERLSIAGNCR---MCLVEIKGI--ASKP-QASCAMNVSDLRAG 76 (700)
Q Consensus 5 v~~~Idg~~v~v~~g~til~a~~~~gi~IP--~~Cy~~~l~~~g~CR---mClVeve~~--~~k~-~~sC~t~v~~gm~~ 76 (700)
++++.|||.++.=+|.||=-|...+||++= =|=||--=.|.++== ==||+|-.. +.-| +.|-.-++-|||
T Consensus 24 l~FtFDG~~~~Gf~GDTlASALLANGv~lvGRSFKYHRPRGIl~AG~EEPNALv~~~~~~~~~~PN~rAT~~el~~GL-- 101 (1026)
T TIGR01372 24 LRFTFDGKSYDGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAARREPNTRATTQELYDGL-- 101 (1026)
T ss_pred EEEEECCEEEEEECCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCC--
T ss_conf 588874728774527189999987892583042421077643525621102464337620014788056899985795--
Q ss_pred CCCCCCEEEECC--HHHHHHHHHHHHH
Q ss_conf 666853798199--8999999999999
Q gi|254780859|r 77 PNGELPEVFTKS--SMVKKARAGVMEF 101 (700)
Q Consensus 77 ~~~~g~~v~t~s--~~v~~~r~~vle~ 101 (700)
+..+++ |-+.--.-.|.++
T Consensus 102 ------~a~SqNrwPSl~~D~~a~~~l 122 (1026)
T TIGR01372 102 ------VAVSQNRWPSLAFDIGAVNDL 122 (1026)
T ss_pred ------EEEEECCCCCHHHHHHHHHHH
T ss_conf ------455316775755677789876
No 316
>KOG0063 consensus
Probab=53.80 E-value=3.9 Score=20.00 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=28.3
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 43290100236454320687400333066641266205875556546622201212101
Q gi|254780859|r 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGAL 213 (700)
Q Consensus 155 ~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGAL 213 (700)
...||-|+-||+-|. ..++.+++- -+.+.+...+-.|+||.-+||-+++
T Consensus 49 e~lCigcgicvkkcp----f~ai~iinl------p~nl~~etthry~~n~fKlhrlp~p 97 (592)
T KOG0063 49 EELCIGCGICVKKCP----FEAIQIINL------PTNLEKETTHRYSANSFKLHRLPIP 97 (592)
T ss_pred HHHHCCCCCEEECCC----CCEEEECCC------CHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 766435420131067----534770478------3567664322302551134248999
No 317
>pfam02824 TGS TGS domain. The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=53.55 E-value=8.4 Score=17.57 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=34.5
Q ss_pred EEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999968887588999986895461212799964560004799971798870200265664566
Q gi|254780859|r 7 LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLR 74 (700)
Q Consensus 7 ~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm 74 (700)
.+=||+..+.|+|.|++|.|.+.+-++-. .|.-+. |.| +++ .=.++.++|=
T Consensus 4 ~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~-----------~~~~A~--VnG---~~v-~l~~~L~~gd 54 (60)
T pfam02824 4 YTPDGKVPELPRGSTPEDFAYAIHTDLGK-----------KFIGAK--VNG---QRV-GLDHVLEDGD 54 (60)
T ss_pred ECCCCCEEECCCCCCHHHHHHHHCHHHHH-----------EEEEEE--ECC---EEC-CCCCCCCCCC
T ss_conf 89999868789989699999886978641-----------176789--998---887-6211248999
No 318
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=53.43 E-value=14 Score=15.94 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=25.8
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 87740185799973853225731025778999759970661685
Q gi|254780859|r 370 IQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGD 413 (700)
Q Consensus 370 i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~ 413 (700)
.+.++++|++|++|+-+.. .|. +..++.|.++|+..|.+...
T Consensus 172 ~~~~~~aDlllvvGTSl~V-~pa-~~l~~~a~~~g~~vviiN~~ 213 (239)
T PRK00481 172 YEALEEADLFIVIGTSLVV-YPA-AGLPHEARAHGAKTVEINLE 213 (239)
T ss_pred HHHHHCCCEEEEECCCCEE-CCH-HHHHHHHHHCCCEEEEECCC
T ss_conf 9999729989996788554-067-77699999769909998299
No 319
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=52.95 E-value=14 Score=15.88 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=26.8
Q ss_pred CHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 7877401857999738532257310257789997599706616850
Q gi|254780859|r 369 TIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414 (700)
Q Consensus 369 ~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~ 414 (700)
..+.++++|++|++|+-... .|. +.-.+.|.++|+..+.+....
T Consensus 165 a~~~~~~aDlllvvGTSl~V-~pa-~~l~~~a~~~g~~viiiN~~~ 208 (222)
T cd01413 165 AIEAAKEADLFIVLGSSLVV-YPA-NLLPLIAKENGAKLVIVNADE 208 (222)
T ss_pred HHHHHHCCCEEEEECCCCEE-HHH-HHHHHHHHHCCCCEEEECCCC
T ss_conf 99999739989997878645-216-578999997699199989999
No 320
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=52.32 E-value=15 Score=15.82 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=56.8
Q ss_pred CCCEEECCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCH
Q ss_conf 222023241-4566888752013445314785043232355547889863687724202334446643401254677878
Q gi|254780859|r 292 NGRLKPVSW-DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTI 370 (700)
Q Consensus 292 ~g~~~~iSW-deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i 370 (700)
++.|.-..| +-+++.+++-++..+.++.++--...+-|..+..++++++|..-.+ .- ..-.....+.
T Consensus 8 ~~~~~~~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~--~v----------~~L~l~~~~~ 75 (224)
T COG3340 8 SSTFSFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGL--EV----------SELHLSKPPL 75 (224)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EE----------EEEECCCCCH
T ss_conf 78766641066661999998647775289970476650207899999999987697--15----------5425467999
Q ss_pred HHHHC----CCEEEEECCCCCCCC-----CCHHHHHHHHHHCCCCEE
Q ss_conf 77401----857999738532257-----310257789997599706
Q gi|254780859|r 371 QGIEE----ADAMLIIGSNPRLEA-----AVLNARIRKRWRRGNFPI 408 (700)
Q Consensus 371 ~die~----ad~illiG~Np~~~~-----Pvl~~rirka~~~g~~~I 408 (700)
++|++ +|.|.+=|-|...=. .-+..-||+++++|...|
T Consensus 76 ~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~Yi 122 (224)
T COG3340 76 AAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYI 122 (224)
T ss_pred HHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEE
T ss_conf 99997651155899888518999999998475899999997698368
No 321
>TIGR02515 IV_pilus_PilQ type IV pilus secretin PilQ; InterPro: IPR013355 A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with the uptake of exogenous DNA, rather than with formation of a type IV pilus - the surface structure required for this may be considered an unusual, incomplete type IV pilus structure.; GO: 0009297 pilus biogenesis, 0009306 protein secretion.
Probab=51.94 E-value=6.5 Score=18.38 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=15.3
Q ss_pred CEEECCHHHHHHHHHH--HHCC
Q ss_conf 2023241456688875--2013
Q gi|254780859|r 294 RLKPVSWDYALKAIKS--AVLS 313 (700)
Q Consensus 294 ~~~~iSWdeAl~~ia~--~L~~ 313 (700)
+++.|.||+|||.|-+ .|-.
T Consensus 41 rL~nVPWDQALDivLk~KgL~~ 62 (464)
T TIGR02515 41 RLKNVPWDQALDIVLKSKGLDK 62 (464)
T ss_pred EECCCCHHHHHHHHHHHCCCCC
T ss_conf 5178986899889875358652
No 322
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family; InterPro: IPR011977 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family consists of probable oligoendopeptidases belonging to MEROPS peptidase family M3, subfamily M3B (clan MA(E)). It is related to lactococcal PepF and group B streptococcal PepB (IPR004438 from INTERPRO) but in a distinct clade with considerable sequence differences not only to IPR004438 from INTERPRO but also to IPR011976 from INTERPRO. Members are not characterised with respect to their substrates and the activity profile may differ..
Probab=51.13 E-value=5.7 Score=18.80 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=10.0
Q ss_pred CCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 011011002222023241456688875
Q gi|254780859|r 283 RLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 283 RL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
+|+-|+-.+||+=+..|-.+++.++.+
T Consensus 176 ~l~~~~~~~~ge~~~l~~~~~~nl~~~ 202 (600)
T TIGR02290 176 TLRIPVEEKDGEEEELSLEQALNLLRD 202 (600)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHCC
T ss_conf 236888514662000269999986208
No 323
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=50.00 E-value=16 Score=15.57 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=24.0
Q ss_pred HHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 8745577047862024720882088674204432885557407999999999807799
Q gi|254780859|r 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSL 610 (700)
Q Consensus 553 A~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~ 610 (700)
...||||+=-+|++=-.=-|--.+ ..-|.|-.-|. -.--.=++++|+..|.+.
T Consensus 260 V~~A~vVItNPTH~AVAL~Y~~~~----~~aP~VvAKG~-d~~A~~Ir~~A~~~~VPi 312 (352)
T PRK05702 260 VPKADVVITNPTHYAVALKYDRGK----MAAPVVVAKGV-DEVALRIREIAREHNVPI 312 (352)
T ss_pred CCCCCEEEECCCCEEEEEEECCCC----CCCCEEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 887978999998628998878899----99998877458-699999999999869988
No 324
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=49.19 E-value=16 Score=15.48 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=25.8
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 87740185799973853225731025778999759970661685
Q gi|254780859|r 370 IQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGD 413 (700)
Q Consensus 370 i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~ 413 (700)
.+.++++|++|++|+-+.. .|. +.-++.|.++|+..|.+...
T Consensus 159 ~~~~~~aDlllvvGTSl~V-~pa-~~l~~~a~~~g~~viiIN~~ 200 (224)
T cd01412 159 VEALAKADLFLVIGTSGVV-YPA-AGLPEEAKERGARVIEINPE 200 (224)
T ss_pred HHHHHHCCEEEEECCCCEE-HHH-HHHHHHHHHCCCCEEEECCC
T ss_conf 9999719979998988555-677-78999999769949998899
No 325
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=48.94 E-value=17 Score=15.45 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=5.7
Q ss_pred HCCEEECCCCCC
Q ss_conf 455770478620
Q gi|254780859|r 555 SADVILPGAAYT 566 (700)
Q Consensus 555 ~ADVVLP~a~~~ 566 (700)
.||||+=-.|++
T Consensus 262 ~AdvVItNPTH~ 273 (383)
T PRK12468 262 KADVIVTNPTHY 273 (383)
T ss_pred CCCEEEECCCHH
T ss_conf 898899785538
No 326
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=48.09 E-value=17 Score=15.36 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=21.8
Q ss_pred HHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 8745577047862024720882088674204432885557407999999999807799
Q gi|254780859|r 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSL 610 (700)
Q Consensus 553 A~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~ 610 (700)
...||||+=-+|.+=-.=-|--.+ ..-|.|-.-|.- .--.=++++|+.-|.+.
T Consensus 253 V~~AdvVitNPTH~AVAL~Y~~~~----~~aP~vvAKG~d-~~A~~Ir~~A~~~~vPi 305 (349)
T PRK12721 253 VKKSTAVVRNPTHIAVCLGYHPGE----TPLPRVLEKGSD-AQALYIVNLAERNGIPV 305 (349)
T ss_pred CCCCCEEEECCCHHHHHHHCCCCC----CCCCEEEEECCC-HHHHHHHHHHHHCCCCE
T ss_conf 899988998865276400026889----999988885385-99999999999879978
No 327
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=46.99 E-value=1.2 Score=23.67 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCCE---EEEEE-------CCCCCCCC-----------CEEEEECCCCEEEEEECCCCCCCCCCEECCCC
Q ss_conf 22332333444302---35220-------12116886-----------43667515999988524788877774113554
Q gi|254780859|r 214 TSKPFAFTGRSWEL---TKTDS-------IDVMDALG-----------SAIRIDARGCEVMRILPRINESINEEWISDKT 272 (700)
Q Consensus 214 t~k~~~~~~Rpwel---~~~~S-------vC~~C~~G-----------C~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KG 272 (700)
|.+|---.-|.||+ ++.+= .|.+|..| |+|.+.+..+|++-| -|-=|
T Consensus 40 tP~P~i~~LR~WD~kLLeRY~PFYaP~cD~CcLCT~GkCdL~~~K~GACGid~~~q~aR~V~i------------AC~IG 107 (795)
T TIGR00314 40 TPMPGIATLRKWDFKLLERYEPFYAPICDMCCLCTMGKCDLSRNKRGACGIDLKAQQARIVLI------------ACCIG 107 (795)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCEEHH------------HHHHH
T ss_conf 242687651233378742588767744336441579865046778553300365313531023------------66776
Q ss_pred CCCC--------------------CH---HHHC-CCCHHHEECCCCEEEC---CHHHHHHHHHHHHCCCC-CCEEEEECC
Q ss_conf 2210--------------------00---0000-0110110022220232---41456688875201344-531478504
Q gi|254780859|r 273 RFIW--------------------DG---LKVQ-RLDCPYARINGRLKPV---SWDYALKAIKSAVLSSD-VKLGAVVGD 324 (700)
Q Consensus 273 Rf~~--------------------d~---~~~d-RL~~PliR~~g~~~~i---SWdeAl~~ia~~L~~~~-~~~g~~~g~ 324 (700)
-.++ |+ |-++ -+..|+.|.=-.-+|- +-++||++.-+.+...- ..|-+-=|+
T Consensus 108 ~saH~gHaRHLv~hlie~~Gkkl~d~piDLG~~v~~eAPi~rtv~GikPkTLgDL~~~L~YaEeqi~~~l~a~HtGqEg~ 187 (795)
T TIGR00314 108 ASAHTGHARHLVDHLIEELGKKLEDYPIDLGSEVDVEAPITRTVTGIKPKTLGDLREALDYAEEQIVHVLSAVHTGQEGD 187 (795)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEECCHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCC
T ss_conf 76655556778999998715300014544688852446622202046778778999999998888887764100167665
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCC-EEEEECCCCCCCCCCH
Q ss_conf 32323555478898636877242023344466434012546778787740185-7999738532257310
Q gi|254780859|r 325 LSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEAD-AMLIIGSNPRLEAAVL 393 (700)
Q Consensus 325 ~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad-~illiG~Np~~~~Pvl 393 (700)
..+-|+--+---++..||-.-=|--+-.++-.+.....+++-...+.=+++++ +||+||.|.....+|+
T Consensus 188 ~lDyESKAlH~gm~D~l~~EvaDlAQIvAy~~PKg~~d~PLve~GfG~~D~sKp~ilviGHnv~p~~~i~ 257 (795)
T TIGR00314 188 YLDYESKALHAGMLDDLGREVADLAQIVAYNLPKGEEDAPLVELGFGVIDKSKPVILVIGHNVLPGADIA 257 (795)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEECCCCEEEEECCCCCCHHHHH
T ss_conf 3205679988867656667888899998637788888777332067245167888999668564512578
No 328
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=46.70 E-value=4.1 Score=19.87 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=7.9
Q ss_pred ECCHHHHHHHHHHH
Q ss_conf 32414566888752
Q gi|254780859|r 297 PVSWDYALKAIKSA 310 (700)
Q Consensus 297 ~iSWdeAl~~ia~~ 310 (700)
+.|-||.++.|..-
T Consensus 18 ~~tveel~~~i~kd 31 (213)
T PRK10076 18 DISLDALEREVMKD 31 (213)
T ss_pred EEEHHHHHHHHHHH
T ss_conf 81099999999971
No 329
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.51 E-value=18 Score=15.20 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=47.2
Q ss_pred CCEEEHHHHHHHHHHHHCCEEECC-CCCCCCCCE----EEEECCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 434502211666688745577047-862024720----88208867420443-288555740799999999980779968
Q gi|254780859|r 539 QALTVYIGSHGDRGAQSADVILPG-AAYTEKSGL----WVNTEGRVQMGMRA-IFPPGDAKEDWEIICALADELKCSLPF 612 (700)
Q Consensus 539 ~~fvV~~d~~~t~tA~~ADVVLP~-a~~~Ek~Gt----f~N~EgRvQ~~~~a-v~p~geak~dw~Il~~La~~LG~~~~~ 612 (700)
..-+|.+.|.++..+.+||=|+=. ..-.-.+|+ |.| .|...++ +.|| .-+++...|.+++|.+++-
T Consensus 183 g~Tii~vTHdl~~~~~~aDrvivm~~G~Iv~~G~p~evf~~----p~~l~~~~l~~P----~~~~l~~~L~~~~g~~~~~ 254 (276)
T PRK13634 183 GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFSH----PDELEAIGLDLP----ETVKFKRALEEKFGISFPK 254 (276)
T ss_pred CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC----HHHHHHCCCCCC----HHHHHHHHHHHHHCCCCCC
T ss_conf 99999986799999997999999989999998789999729----999997799999----6999999998965999998
Q ss_pred --CCHHHHHHHHHHH
Q ss_conf --7989999999997
Q gi|254780859|r 613 --SSLSQLRSHLYSH 625 (700)
Q Consensus 613 --~~~~ei~~ei~~~ 625 (700)
-+.+|+.++|.+.
T Consensus 255 ~~~t~ee~~~~i~~~ 269 (276)
T PRK13634 255 PTLTLEELAHEVVQV 269 (276)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 888999999999999
No 330
>KOG1184 consensus
Probab=46.42 E-value=18 Score=15.19 Aligned_cols=114 Identities=13% Similarity=-0.000 Sum_probs=59.9
Q ss_pred CCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH-HHHHHHHHCCCCCEECCCCCCCCCHHH-
Q ss_conf 001101100222202324145668887520134453147850432323555-478898636877242023344466434-
Q gi|254780859|r 282 QRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIY-ALKLLMQSLGCENFDCRQNGEYLDPSY- 359 (700)
Q Consensus 282 dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y-~~k~l~~~lGt~nid~~~~~~~~~~~~- 359 (700)
.|+..|+.-.--.=.+..-++|.+.+++.+..++. -..++++..+.+..- .+++|+.+.+.+.+-.-..-...+...
T Consensus 180 ~~~~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~-Pvil~~~~~~~~~~~~~~~~l~~~~~~p~~vtp~~Kg~i~E~hp 258 (561)
T KOG1184 180 GLLPVPLDLSPKPSNKEGLEEAVDAILELINKAKK-PVILGDPKLRRAKAESAFVELADATGFPVFVTPMGKGFIPESHP 258 (561)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 67788755687877178899999999998641368-73640432257678999999877537870572156555467688
Q ss_pred -HCCCCCCCCC---H-HHHHCCCEEEEECCCCCCCCCCHHHH
Q ss_conf -0125467787---8-77401857999738532257310257
Q gi|254780859|r 360 -GRASYIFNPT---I-QGIEEADAMLIIGSNPRLEAAVLNAR 396 (700)
Q Consensus 360 -~~~~~~~~~~---i-~die~ad~illiG~Np~~~~Pvl~~r 396 (700)
..+-|+..-+ . +-+|.+|+++.+|....+-..+.+..
T Consensus 259 ~y~Gvy~G~vs~~~~~e~vesaD~ii~~G~~~sd~ss~~~s~ 300 (561)
T KOG1184 259 HYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSY 300 (561)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEE
T ss_conf 551367043563879999862594787333223344650475
No 331
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD; InterPro: IPR013478 MauD appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulphide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulphide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded .; GO: 0030416 methylamine metabolic process.
Probab=45.87 E-value=6 Score=18.66 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=5.8
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 8774018579997
Q gi|254780859|r 370 IQGIEEADAMLII 382 (700)
Q Consensus 370 i~die~ad~illi 382 (700)
+..+|+.|+|++=
T Consensus 99 ia~~E~~~Vv~IS 111 (189)
T TIGR02661 99 IARAEEIDVVLIS 111 (189)
T ss_pred HHHHHCCCEEEEE
T ss_conf 8867253258972
No 332
>PRK06298 type III secretion system protein; Validated
Probab=45.79 E-value=18 Score=15.12 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=22.2
Q ss_pred HHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8874557704786202472088208867420443288555740799999999980779
Q gi|254780859|r 552 GAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS 609 (700)
Q Consensus 552 tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~ 609 (700)
....||||+=-+|++=-.=-|-..+ ..-|.|-.-|. -.--.=++++|+.-|.+
T Consensus 253 ~V~~A~vVitNPTH~AVAL~Y~~~~----~~aP~vvAKG~-d~~A~~Ir~~A~~~~VP 305 (360)
T PRK06298 253 QVKHASAVVSNPKDIAVAIGYMPEK----YKAPWIIAMGI-NLRAKRIIAEAEKYGIP 305 (360)
T ss_pred CCCCCCEEEECCCEEEEEEEECCCC----CCCCEEEEECC-CHHHHHHHHHHHHCCCC
T ss_conf 6999988998886178886666899----99998888548-59999999999987998
No 333
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=45.28 E-value=19 Score=15.10 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=43.6
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECC--------CC-EEEEEECCCCCCCCCCEECCC
Q ss_conf 662220121210122332333444302352201211688643667515--------99-998852478887777411355
Q gi|254780859|r 201 QGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAIRIDAR--------GC-EVMRILPRINESINEEWISDK 271 (700)
Q Consensus 201 ~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i~v~v~--------~g-~i~rv~~~~~~~vN~g~lC~K 271 (700)
-=+.+.+|.+|.+--|..+|-+ +- . . +--+.|-.-=.+..++. ++ +++-+-|...++| .--.
T Consensus 22 ~~rt~~~~~~~~~slk~GKyGp--yl-~-~-an~Pe~~~~~eL~~e~~~~l~~~~~~~~r~LG~DP~tG~eI----~~k~ 92 (298)
T COG1754 22 EPRTCPLCGTGELSLKLGKYGP--YL-E-C-ANYPECTTPKELTLEVAENLEATPQGGPRVLGIDPETGEEI----YLKN 92 (298)
T ss_pred CCCCCCCCCCCCEEEEECCCCC--CC-E-E-CCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCEE----EEEC
T ss_conf 5761443466615688425433--10-1-2-06866547666140001222335689975236688888566----8852
Q ss_pred CCCCC--C-HHHHC--CCCHHHEECCCCEEECCHHHHHHHHH
Q ss_conf 42210--0-00000--01101100222202324145668887
Q gi|254780859|r 272 TRFIW--D-GLKVQ--RLDCPYARINGRLKPVSWDYALKAIK 308 (700)
Q Consensus 272 GRf~~--d-~~~~d--RL~~PliR~~g~~~~iSWdeAl~~ia 308 (700)
||||- + .+... -.++--+..+-+.+.|+.|+||.+++
T Consensus 93 GryGPYVq~~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLs 134 (298)
T COG1754 93 GRYGPYVQEQLGDPKPKPKRASLPKGWKPETITLEKALKLLS 134 (298)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHC
T ss_conf 677761564347888885446688988831275999999873
No 334
>pfam01312 Bac_export_2 FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Probab=44.91 E-value=19 Score=15.03 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=26.7
Q ss_pred HHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 688745577047862024720882088674204432885557407999999999807799
Q gi|254780859|r 551 RGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSL 610 (700)
Q Consensus 551 ~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~ 610 (700)
.....||||+=-+|++==.=-|-..+. .-|.|-.-| +-.--.=++++|+..|.+.
T Consensus 253 ~~V~~A~vVItNPTH~AVAL~Y~~~~~----~aP~vvAKG-~d~~A~~Ir~~A~~~~VPi 307 (343)
T pfam01312 253 QDVPKADVVVTNPTHYAVALYYDPEEM----PAPRIVAKG-EDEQALAIRAIAEENGIPV 307 (343)
T ss_pred HCCCCCCEEEECCCCEEEEEEECCCCC----CCCEEEEEC-CCHHHHHHHHHHHHCCCCE
T ss_conf 258989889999986278988788999----999888854-8699999999999879978
No 335
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=44.57 E-value=19 Score=14.99 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=25.6
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 877401857999738532257310257789997599706616850
Q gi|254780859|r 370 IQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414 (700)
Q Consensus 370 i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~ 414 (700)
.+.++++|++|++|+.+.. .|... .+ ..+++|+..|.+....
T Consensus 166 ~~~~~~aDlllviGTSl~V-~Pa~~-l~-~~~~~g~~~i~IN~~~ 207 (225)
T cd01411 166 IQAIEKADLLVIVGTSFVV-YPFAG-LI-DYRQAGANLIAINKEP 207 (225)
T ss_pred HHHHHCCCEEEEECCCCEE-HHHHH-HH-HHHHCCCCEEEECCCC
T ss_conf 9999649999997948486-41667-99-9987899599989999
No 336
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; InterPro: IPR005975 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=43.40 E-value=18 Score=15.28 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=57.6
Q ss_pred CCEEECCHHHHHHHHHHHHCC--------CC-----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCE---E-CCCCCCCC
Q ss_conf 220232414566888752013--------44-----5314785043232355547889863687724---2-02334446
Q gi|254780859|r 293 GRLKPVSWDYALKAIKSAVLS--------SD-----VKLGAVVGDLSSVEEIYALKLLMQSLGCENF---D-CRQNGEYL 355 (700)
Q Consensus 293 g~~~~iSWdeAl~~ia~~L~~--------~~-----~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~ni---d-~~~~~~~~ 355 (700)
|.+ +--|-.|++.+.+.+-. .+ .++..++|+.+|.-+.--+++..++||=.-| | +++-..++
T Consensus 140 G~~-e~G~A~aVe~~i~~~~p~~~~~~~~~~riyPqP~v~lLvg~~ltpgDie~l~~~vEaFGL~P~~LPDLS~SLDGHL 218 (451)
T TIGR01285 140 GSL-EDGYAKAVESIIEAWVPEAPERKADAKRIYPQPQVNLLVGSLLTPGDIEELRDMVEAFGLKPVVLPDLSRSLDGHL 218 (451)
T ss_pred CCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHCCCCCCC
T ss_conf 623-4589999999997633776555676640068982445177888886799999999860897224021100246500
Q ss_pred CHHHHCCCCCCCCCHHHHH---CCCEEEEECCCCCCCCCCHHHH
Q ss_conf 6434012546778787740---1857999738532257310257
Q gi|254780859|r 356 DPSYGRASYIFNPTIQGIE---EADAMLIIGSNPRLEAAVLNAR 396 (700)
Q Consensus 356 ~~~~~~~~~~~~~~i~die---~ad~illiG~Np~~~~Pvl~~r 396 (700)
+......-..++++++||+ +|=+.|+||...+..++++.-|
T Consensus 219 a~dd~s~~T~GGT~l~~i~~~g~s~~tlaIGe~mr~aA~~l~~R 262 (451)
T TIGR01285 219 ADDDFSPITLGGTTLEDIRELGQSAVTLAIGESMRAAAELLKDR 262 (451)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87870056789973599987368874688777654446752212
No 337
>PRK07941 DNA topoisomerase I; Validated
Probab=43.20 E-value=20 Score=14.85 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=31.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCC--CC--CCC-CCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 7788878883799899838986--74--777-56778788856021006432901002364543206874003330
Q gi|254780859|r 111 PICDQGGECDLQDQAIFFGFGS--SR--YSE-EKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVG 181 (700)
Q Consensus 111 p~Cd~~GeC~LQd~~~~~g~~~--~r--~~~-~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~ 181 (700)
.-+|.-||-==-+..-..+... .| |.+ .|.++..---+| -..|+|. +..+.+-|+.|-+.|...=.+..
T Consensus 101 TDpDREGEaIawhl~e~lk~~~~vkRv~F~EITk~AI~~Al~np-r~id~~L-V~Aq~aRRilDrLvGf~lSp~Lw 174 (933)
T PRK07941 101 TDGDREGEAIAWHLLETLKPRVPVKRMVFHEITEPAILAAAENP-RDLDIDL-VDAQETRRILDRLYGYEVSPVLW 174 (933)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCC-CCCCHHH-HHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 89972404999999998389987478999268999999998583-0016989-99999999999886461369999
No 338
>TIGR00280 L37a ribosomal protein L37a; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This ribosomal protein is found in archaebacteria and eukaryotes . Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type .; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=42.81 E-value=18 Score=15.17 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHCCC-CCCCCCCCC
Q ss_conf 999999999982789-988778887
Q gi|254780859|r 93 KARAGVMEFLLINHP-LDCPICDQG 116 (700)
Q Consensus 93 ~~r~~vle~ll~nHp-ldCp~Cd~~ 116 (700)
++|+.|.++=...|- .|||.||+-
T Consensus 21 ~~rr~v~~~E~~~~~kY~C~~CG~k 45 (92)
T TIGR00280 21 KVRRQVKKIEIKQKKKYVCPVCGKK 45 (92)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 3346688889987416788887589
No 339
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=42.04 E-value=21 Score=14.73 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHH
Q ss_conf 456688875201344531478504323235
Q gi|254780859|r 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEE 330 (700)
Q Consensus 301 deAl~~ia~~L~~~~~~~g~~~g~~~t~Ee 330 (700)
..+|+.+++-|++.+ ++-++.|.-.|.|+
T Consensus 6 ~~~l~~l~~~l~~s~-~ivvlTGAGiSteS 34 (285)
T PRK05333 6 PAALDALQDFVERHP-RLFVLTGAGISTDS 34 (285)
T ss_pred HHHHHHHHHHHHHCC-CEEEEECCEEEHHH
T ss_conf 899999999997299-78999297300524
No 340
>pfam12593 McyA_C Microcystin synthetase C terminal. This domain family is found in bacteria, and is approximately 40 amino acids in length. The family is found in association with pfam08242, pfam00501. There is a conserved YAN sequence motif. Microcystins form a large family of small cyclic heptapeptides harbouring extensive modifications in amino acid residue composition and functional group chemistry. These peptide hepatotoxins contain a range of non-proteinogenic amino acids and unusual peptide bonds, and are typically N-methylated. They are synthesized on large enzyme complexes consisting of non-ribosomal peptide synthetases and polyketide synthases. This family is made up of the C terminal of microcystin synthetase, one of the proteins involved in this synthesis pathway.
Probab=41.44 E-value=16 Score=15.53 Aligned_cols=30 Identities=23% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEEEECCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 088208867420443288555740799999
Q gi|254780859|r 571 LWVNTEGRVQMGMRAIFPPGDAKEDWEIIC 600 (700)
Q Consensus 571 tf~N~EgRvQ~~~~av~p~geak~dw~Il~ 600 (700)
.|+-.+.+-+.-..+..|...+||||+...
T Consensus 3 IF~~~q~~~r~~l~~ft~ThqakpdWq~YA 32 (40)
T pfam12593 3 IFVQLQSQKRRPLRVFTPTHQAKPDWQLYA 32 (40)
T ss_pred EEEECCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf 675301356242588566434782167760
No 341
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=40.80 E-value=22 Score=14.60 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=22.8
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEC
Q ss_conf 87740185799973853225731025778999759970661
Q gi|254780859|r 370 IQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAV 410 (700)
Q Consensus 370 i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~v 410 (700)
.+.++++|++|++|+..... |.. .+-+.+++++..|++
T Consensus 170 ~~~~~~~Dl~lviGTSl~V~-Paa--~l~~~a~~~~~~viI 207 (235)
T cd01408 170 EEDKEEADLLIVIGTSLKVA-PFA--SLPSRVPSEVPRVLI 207 (235)
T ss_pred HHHHHCCCEEEEECCCCEEC-CHH--HHHHHHHCCCCEEEE
T ss_conf 99996599999979874650-676--769999769989998
No 342
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit; InterPro: IPR011806 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster .; GO: 0018551 hydrogensulfite reductase activity, 0020037 heme binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=40.18 E-value=9.1 Score=17.32 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=26.0
Q ss_pred CEEEEEECCCCCCCCCCEECCCCCCCCCH--HHHCCCCHHHEECCCCEEECCHHHHHHHHHHH
Q ss_conf 99988524788877774113554221000--00000110110022220232414566888752
Q gi|254780859|r 250 CEVMRILPRINESINEEWISDKTRFIWDG--LKVQRLDCPYARINGRLKPVSWDYALKAIKSA 310 (700)
Q Consensus 250 g~i~rv~~~~~~~vN~g~lC~KGRf~~d~--~~~dRL~~PliR~~g~~~~iSWdeAl~~ia~~ 310 (700)
|-+|+|.+--..-+ +++|+-|-.--.. .|.=|+.+| .|+|=+++.=--|--|+++
T Consensus 61 Gg~V~v~gygGGvi--~R~~~~g~~~P~~~efht~RV~~p----~G~fy~T~~LRgl~dvw~~ 117 (430)
T TIGR02064 61 GGIVSVFGYGGGVI--GRYSDLGEKFPKVKEFHTVRVQQP----SGRFYSTSYLRGLCDVWEK 117 (430)
T ss_pred CCEEEEEECCCCEE--HHHHCCCCCCCCCCCEEEEEECCC----CCCCCCHHHHHHHHHHHHH
T ss_conf 85278864268510--121027760779873278871279----8775528887789999986
No 343
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=39.81 E-value=10 Score=17.00 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=15.7
Q ss_pred CCCCCCCEEECCCCCCCCCC
Q ss_conf 56546622201212101223
Q gi|254780859|r 197 TSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 197 ~~e~~Gncvd~CPvGALt~k 216 (700)
.|--||-|...||+|-.|+=
T Consensus 40 ~C~QCG~CT~sCPs~r~t~y 59 (195)
T COG1150 40 GCYQCGTCTGSCPSGRFTDY 59 (195)
T ss_pred HHHCCCCCCCCCCCCCCCCC
T ss_conf 76406866577887655788
No 344
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178 Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=39.77 E-value=23 Score=14.49 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 4323235554788986
Q gi|254780859|r 324 DLSSVEEIYALKLLMQ 339 (700)
Q Consensus 324 ~~~t~Ee~y~~k~l~~ 339 (700)
.|+|+-| .+|+|++
T Consensus 43 TRTTLRE--VLQRLAR 56 (275)
T TIGR02812 43 TRTTLRE--VLQRLAR 56 (275)
T ss_pred CCCHHHH--HHHHHHH
T ss_conf 6303789--9988764
No 345
>pfam09144 YpM Yersinia pseudotuberculosis mitogen. Members of this family of Yersinia pseudotuberculosis mitogens adopt a sandwich structure consisting of nine strands in two beta sheets, in a jelly-roll topology. As with other superantigens, they are able to excessively activate T cells by binding to the T cell receptor.
Probab=39.53 E-value=23 Score=14.46 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=34.3
Q ss_pred EEECCCCEEEEEECCC--CCCCCCCEECCCCCCCCCHHHHCCCCHHHEECC
Q ss_conf 6751599998852478--887777411355422100000000110110022
Q gi|254780859|r 244 RIDARGCEVMRILPRI--NESINEEWISDKTRFIWDGLKVQRLDCPYARIN 292 (700)
Q Consensus 244 ~v~v~~g~i~rv~~~~--~~~vN~g~lC~KGRf~~d~~~~dRL~~PliR~~ 292 (700)
+-.+|+|++..|+-.. |....--.||.-||-||.-+...-|.+||.-.+
T Consensus 24 egk~rggelyavl~stn~nadmtlill~~ig~~gw~eikr~did~pl~yed 74 (117)
T pfam09144 24 EGKTRGGELYAVLHSTNVNADMTLILLRNVGGNGWGEIKRNDIDKPLKYED 74 (117)
T ss_pred CCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCHH
T ss_conf 666667478888750577876489999842777320110301577630021
No 346
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=39.36 E-value=23 Score=14.45 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=27.5
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 8774018579997385322573102577899975997066168501
Q gi|254780859|r 370 IQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVG 415 (700)
Q Consensus 370 i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~ 415 (700)
.+.++++|++|++|+-+.. .|. +..++.+.++|+..|.+..+.+
T Consensus 162 ~~~~~~~DlllvvGTSl~V-~pa-~~l~~~a~~~g~~viiiN~~~t 205 (218)
T cd01407 162 AEALAKADLLLVIGTSLQV-YPA-AGLPLYAPERGAPVVIINLEPT 205 (218)
T ss_pred HHHHHCCCEEEEECCCCEE-CCH-HHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999749979995678576-327-7899999976991999879999
No 347
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=39.30 E-value=23 Score=14.44 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=26.9
Q ss_pred CHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 787740185799973853225731025778999759970661685
Q gi|254780859|r 369 TIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGD 413 (700)
Q Consensus 369 ~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~ 413 (700)
..+.++++|++|++|+-.... |.. .-++.|.+.|+..+.+...
T Consensus 149 a~~~~~~aDlllviGTSl~V~-Paa-~l~~~a~~~g~~vviiN~~ 191 (206)
T cd01410 149 AAAAACRADLFLCLGTSLQVT-PAA-NLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred HHHHHHHCCEEEEECCCCEEC-CHH-HHHHHHHHCCCCEEEECCC
T ss_conf 999998499899976795552-276-7899999759909998999
No 348
>PRK09108 type III secretion system protein HrcU; Validated
Probab=38.85 E-value=23 Score=14.39 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=23.5
Q ss_pred HHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 8745577047862024720882088674204432885557407999999999807799
Q gi|254780859|r 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSL 610 (700)
Q Consensus 553 A~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~ 610 (700)
...||||+=-+|++==.=-|--- ...-|.|-.-|. -.--.=++++|+.-|.+.
T Consensus 256 V~~A~vVitNPTH~AVAL~Y~~~----~~~aP~VvAKG~-d~~A~~Ir~~A~~~~VPi 308 (354)
T PRK09108 256 VAKANVVVVNPTHYAVALRYAPD----EHPLPRVVAKGV-DDGALALRRHAHALGIPI 308 (354)
T ss_pred CCCCCEEEECCCCEEEEEEECCC----CCCCCEEHHHCC-CHHHHHHHHHHHHCCCCE
T ss_conf 78784899876604678675788----898898112168-399999999999869978
No 349
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=38.01 E-value=24 Score=14.30 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=24.8
Q ss_pred HHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 688745577047862024720882088674204432885557407999999999807799
Q gi|254780859|r 551 RGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSL 610 (700)
Q Consensus 551 ~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~~ 610 (700)
.....||||+=-+|++==.=-|-..+. .-|.|-.-| +-.--.=++++|+.-|.+.
T Consensus 260 ~~V~~AdvVitNPTH~AVAL~Y~~~~~----~aP~VvAKG-~d~~A~~Ir~~A~~~~VPi 314 (358)
T PRK13109 260 AAVPRATLVIANPTHFAIALRYERSEN----PAPLVVAKG-QDLIALKIREIAERNGIPV 314 (358)
T ss_pred HCCCCCCEEEECCCCEEEEEEECCCCC----CCCEEEEEC-CCHHHHHHHHHHHHCCCCE
T ss_conf 258988389988871567766668999----999888845-8699999999999879978
No 350
>pfam03660 PHF5 PHF5-like protein. This family of proteins the superfamily of PHD-finger proteins. At least one example, from mouse, may act as a chromatin-associated protein. The S. pombe ini1 gene is essential, required for splicing. It is localized in the nucleus, but not detected in the nucleolus and can be complemented by human ini1.
Probab=37.97 E-value=18 Score=15.28 Aligned_cols=17 Identities=35% Similarity=0.639 Sum_probs=11.1
Q ss_pred HHHHHHHCCCCCCCCCC
Q ss_conf 99999827899887788
Q gi|254780859|r 98 VMEFLLINHPLDCPICD 114 (700)
Q Consensus 98 vle~ll~nHpldCp~Cd 114 (700)
.+-.|-.+|--.|||||
T Consensus 17 ~iG~lC~~CdGkCpiCD 33 (105)
T pfam03660 17 AIGRLCEKCDGKCPICD 33 (105)
T ss_pred HHHHHHHHCCCCCCCCC
T ss_conf 77766776188466454
No 351
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=37.23 E-value=25 Score=14.22 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.6
Q ss_pred ECCEEEEECCCCCHHHHHHHCCCC
Q ss_conf 999999968887588999986895
Q gi|254780859|r 9 VDGIEIEVPSGFTILQACELAGAE 32 (700)
Q Consensus 9 Idg~~v~v~~g~til~a~~~~gi~ 32 (700)
-||...++++|+|.+|.|+..+-.
T Consensus 6 pDgs~~~~~~~~T~~eiA~~i~~~ 29 (61)
T cd01667 6 PDGSVKEFPKGTTPLDIAKSISPG 29 (61)
T ss_pred CCCCEEECCCCCCHHHHHHHHCHH
T ss_conf 999968878998999999985966
No 352
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=36.79 E-value=25 Score=14.17 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 579997385322573102577899975997
Q gi|254780859|r 377 DAMLIIGSNPRLEAAVLNARIRKRWRRGNF 406 (700)
Q Consensus 377 d~illiG~Np~~~~Pvl~~rirka~~~g~~ 406 (700)
...+++++|=+.|.| ..-|+++|.++|..
T Consensus 255 ~~~~~~asdEKTE~p-TpKkl~dARkkGqV 283 (609)
T PRK12772 255 PLLIIFASDDKTEEA-TPKKKSDARKKGQV 283 (609)
T ss_pred CCEEEECCCCCCCCC-CHHHHHHHHHCCCC
T ss_conf 410343487778999-81569989857898
No 353
>TIGR00721 tfx DNA-binding protein, Tfx family; InterPro: IPR004645 This is a family of Tfx DNA-binding proteins, which is restricted to the archaea. Homology among the members is strongest in the helix-turn-helix-containing N-terminal region. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.; GO: 0003677 DNA binding.
Probab=36.58 E-value=22 Score=14.57 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=3.5
Q ss_pred HHHHHHCCCC
Q ss_conf 8875201344
Q gi|254780859|r 306 AIKSAVLSSD 315 (700)
Q Consensus 306 ~ia~~L~~~~ 315 (700)
.||..|+..+
T Consensus 26 eIAk~LkTtR 35 (142)
T TIGR00721 26 EIAKILKTTR 35 (142)
T ss_pred HHHHHHCCCC
T ss_conf 8987726720
No 354
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=36.03 E-value=21 Score=14.65 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCHHCCCHHHCCCCCHHHHHHHH--CCCCCC------EEEECCCCCCEEEECCCCCC
Q ss_conf 60210064329010023645432--068740------03330666412662058755
Q gi|254780859|r 148 GPLVKTVMNRCIHCTRCVRFITE--VAGVSE------LGLVGRGENAEITTYLEQSL 196 (700)
Q Consensus 148 ~p~i~~d~~rCI~C~RCVR~c~E--v~g~~~------lg~~~RG~~~~i~~~~~~~~ 196 (700)
+-+..++-++|=.=.+|.|--.- |.|-.- .++..+|.+..|.-..+..|
T Consensus 125 ~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM 181 (793)
T COG1251 125 GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM 181 (793)
T ss_pred CEEEEECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 712783199999999998606885897551141678878874797348987336688
No 355
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=36.02 E-value=19 Score=15.07 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=36.6
Q ss_pred EEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999968887588999986895461212799964560004799971798870200265664566
Q gi|254780859|r 6 KLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLR 74 (700)
Q Consensus 6 ~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm 74 (700)
-+|=+|..++-|+|.|.+|.|-+...++-. ++=-++|.| +++ +=.++.++|=
T Consensus 3 vftP~G~~~~LP~GaT~lDfAy~iht~lG~-------------~~~~a~vNg---~~~-~l~~~L~~GD 54 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYAIHTEIGN-------------RCVGAKVNG---KLV-PLSTVLKDGD 54 (60)
T ss_pred EECCCCCEEECCCCCCHHHEHHHHCCCHHH-------------EEEEEEECC---EEC-CCCCCCCCCC
T ss_conf 989999778789998141043355410142-------------268999999---998-9876828999
No 356
>KOG4166 consensus
Probab=35.89 E-value=22 Score=14.53 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=21.9
Q ss_pred HHHHHHHHCCC-CCCCCHHHHHHHHHHH
Q ss_conf 99999980779-9687989999999997
Q gi|254780859|r 599 ICALADELKCS-LPFSSLSQLRSHLYSH 625 (700)
Q Consensus 599 l~~La~~LG~~-~~~~~~~ei~~ei~~~ 625 (700)
|..||+.||.+ +-....+|+++.|.+.
T Consensus 606 f~klA~AmGikalRV~K~edL~~k~kef 633 (675)
T KOG4166 606 FLKLAAAMGIKALRVTKKEDLREKIKEF 633 (675)
T ss_pred HHHHHHHCCCCHHEEEHHHHHHHHHHHH
T ss_conf 8989986497030210288899999997
No 357
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=35.33 E-value=10 Score=16.88 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=16.8
Q ss_pred CCCHHHCCCCCHHHHHHHHCC
Q ss_conf 006432901002364543206
Q gi|254780859|r 152 KTVMNRCIHCTRCVRFITEVA 172 (700)
Q Consensus 152 ~~d~~rCI~C~RCVR~c~Ev~ 172 (700)
.++.++||-|--|--.|..+=
T Consensus 10 vmnLDKCIGCHTCSvTCKnvW 30 (513)
T COG1140 10 VLNLDKCIGCHTCSVTCKNVW 30 (513)
T ss_pred HHCCCCCCCCCCCCEEECCCC
T ss_conf 410221135410202520411
No 358
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=34.47 E-value=15 Score=15.77 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHCC
Q ss_conf 1002364543206
Q gi|254780859|r 160 HCTRCVRFITEVA 172 (700)
Q Consensus 160 ~C~RCVR~c~Ev~ 172 (700)
+||+|+|.+.||.
T Consensus 38 qCGKC~~~Ar~il 50 (64)
T PRK10509 38 QCGKCIRAAREVM 50 (64)
T ss_pred CCCHHHHHHHHHH
T ss_conf 5608899999999
No 359
>PRK06599 DNA topoisomerase I; Validated
Probab=34.08 E-value=18 Score=15.19 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=14.2
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCC
Q ss_conf 064329010023645432068740
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSE 176 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~ 176 (700)
.||+. +.=+.+-|..|-+.|...
T Consensus 131 id~~L-v~Aq~aRr~lDrlvG~~l 153 (776)
T PRK06599 131 LDTNL-VNAQQARRALDYLVGFTL 153 (776)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 17778-999999999885533745
No 360
>PRK08780 DNA topoisomerase III; Provisional
Probab=33.47 E-value=22 Score=14.55 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=16.4
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 0643290100236454320687400333
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLV 180 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~ 180 (700)
.||+. +.-+.+-|..|-+.|...=-+.
T Consensus 132 id~~L-v~Aq~aRrilDrLvG~~lSp~L 158 (783)
T PRK08780 132 IASDL-VDAQQARRALDYLVGFNLSPVL 158 (783)
T ss_pred HHHHH-HHHHHHHHHHHHHHCCCHHHHH
T ss_conf 02778-9999999988832062301888
No 361
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=33.32 E-value=28 Score=13.79 Aligned_cols=28 Identities=11% Similarity=-0.072 Sum_probs=22.3
Q ss_pred HHHHHHHHCCC-CCCCCHHHHHHHHHHHC
Q ss_conf 99999980779-96879899999999978
Q gi|254780859|r 599 ICALADELKCS-LPFSSLSQLRSHLYSHH 626 (700)
Q Consensus 599 l~~La~~LG~~-~~~~~~~ei~~ei~~~~ 626 (700)
|..||+.+|.. +.-++++|+...|.+..
T Consensus 488 f~~lA~a~G~~~~~v~~~~eL~~al~~a~ 516 (548)
T PRK07449 488 FEHAAAMYGLEYHRPETWAELEEALDDAL 516 (548)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99999977993998599999999999998
No 362
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=33.23 E-value=26 Score=14.01 Aligned_cols=73 Identities=22% Similarity=0.191 Sum_probs=49.4
Q ss_pred EEEEECCCCCCCCCCEECCCC--CCCCCHHHH-CCCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 988524788877774113554--221000000-00110110022220232414566888752013445314785043232
Q gi|254780859|r 252 VMRILPRINESINEEWISDKT--RFIWDGLKV-QRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSV 328 (700)
Q Consensus 252 i~rv~~~~~~~vN~g~lC~KG--Rf~~d~~~~-dRL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~~~g~~~g~~~t~ 328 (700)
|+-|+|-|.+. +|-.|.|= +|+|=+|+. |=|..=+.|.|.++- .+|.+-+++ |.|+-+..|.
T Consensus 1 V~FvLGGPGSG--KGTQCa~Iv~~f~~~HLSAGDLLR~E~~R~GSe~g--------~lI~~~Ike-----G~IVPs~VTv 65 (189)
T TIGR01359 1 VVFVLGGPGSG--KGTQCAKIVENFGYVHLSAGDLLRAEIKREGSENG--------ELIESYIKE-----GKIVPSEVTV 65 (189)
T ss_pred CEEEECCCCCC--HHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCC--------CHHHHHHHC-----CCEEHHEEEH
T ss_conf 97763698987--56789999985394688074788998610478885--------037744115-----8311122324
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 35554788986368
Q gi|254780859|r 329 EEIYALKLLMQSLG 342 (700)
Q Consensus 329 Ee~y~~k~l~~~lG 342 (700)
+ |+++.++.-|
T Consensus 66 ~---LL~kai~~~~ 76 (189)
T TIGR01359 66 E---LLKKAIKEDG 76 (189)
T ss_pred H---HHHHHHHHCC
T ss_conf 5---8887776315
No 363
>pfam02597 ThiS ThiS family. ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in E. coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS. MoaD, a protein involved sulphur transfer in molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.
Probab=33.12 E-value=28 Score=13.77 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=33.9
Q ss_pred EECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC
Q ss_conf 9999999968887588999986895461212799964560004799971798-87020026566456
Q gi|254780859|r 8 KVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIA-SKPQASCAMNVSDL 73 (700)
Q Consensus 8 ~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~-~k~~~sC~t~v~~g 73 (700)
.++|+++++++++|+-+..+..++ +-..|.|++.+.- ++.. =.|+++||
T Consensus 9 e~~G~~~~~~~~~tv~~ll~~l~~---------------~~~~v~v~vN~~~v~~~~--~~~~L~~g 58 (70)
T pfam02597 9 ELAGKELELPEGATVAELLEALGL---------------NPERVAVAVNGEIVPRSQ--ADTPLKDG 58 (70)
T ss_pred HHCCCEEECCCCCCHHHHHHHHCC---------------CCCCEEEEECCEECCCCC--CCCCCCCC
T ss_conf 985997635999969999998388---------------888889999999867856--77677999
No 364
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=32.97 E-value=13 Score=16.16 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=7.7
Q ss_pred CCCHHHCCCCCHH
Q ss_conf 0064329010023
Q gi|254780859|r 152 KTVMNRCIHCTRC 164 (700)
Q Consensus 152 ~~d~~rCI~C~RC 164 (700)
.+..|||++|+|-
T Consensus 18 tR~~NRC~~tGRp 30 (61)
T PRK08061 18 VRAYTRCERCGRP 30 (61)
T ss_pred CCCCCCCCCCCCC
T ss_conf 4010102568987
No 365
>KOG2096 consensus
Probab=32.93 E-value=29 Score=13.75 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCC---EEE---EEECCC----------CCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCC-
Q ss_conf 2233233344430---235---220121----------16886436675159999885247888777741135542210-
Q gi|254780859|r 214 TSKPFAFTGRSWE---LTK---TDSIDV----------MDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIW- 276 (700)
Q Consensus 214 t~k~~~~~~Rpwe---l~~---~~SvC~----------~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~- 276 (700)
++-.+.+.+-+|+ ..+ ++++.. .|+.+-.|-++.-.|+++.-.-..........+++-|||--
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~ 245 (420)
T KOG2096 166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAV 245 (420)
T ss_pred CCCCCCCCCCCCCCCCCCHHCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCEEECCCCCEEEE
T ss_conf 46887754322233323000335258886148836999813898589995677532020332234643135799847987
Q ss_pred CHHHHC-CCCHHHEECCCCEEECC
Q ss_conf 000000-01101100222202324
Q gi|254780859|r 277 DGLKVQ-RLDCPYARINGRLKPVS 299 (700)
Q Consensus 277 d~~~~d-RL~~PliR~~g~~~~iS 299 (700)
-+..|| .+=.|.--++|.|++++
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~ 269 (420)
T KOG2096 246 SGFTPDVKVWEPIFTKDGTFQEVK 269 (420)
T ss_pred ECCCCCCEEEEEEECCCCCHHHHH
T ss_conf 327887368987765676065323
No 366
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=32.81 E-value=29 Score=13.73 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=19.6
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 79997385322573102577899975997
Q gi|254780859|r 378 AMLIIGSNPRLEAAVLNARIRKRWRRGNF 406 (700)
Q Consensus 378 ~illiG~Np~~~~Pvl~~rirka~~~g~~ 406 (700)
.=+.-+.|...+-|-...|.|+|-++|..
T Consensus 293 LQlFAAEDEGRTEpATpRRrRKAREEGqV 321 (649)
T PRK12773 293 LQLFAAEDEGRTEPGSERRRREEREKGNV 321 (649)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 00221456788899982568988855798
No 367
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.61 E-value=29 Score=13.71 Aligned_cols=99 Identities=21% Similarity=0.333 Sum_probs=55.5
Q ss_pred CCHHHEECC-----CCEEECCHHHHHHHHHHHHCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCE---EC
Q ss_conf 110110022-----2202324145668887520134-------45314785043232355547889863687724---20
Q gi|254780859|r 284 LDCPYARIN-----GRLKPVSWDYALKAIKSAVLSS-------DVKLGAVVGDLSSVEEIYALKLLMQSLGCENF---DC 348 (700)
Q Consensus 284 L~~PliR~~-----g~~~~iSWdeAl~~ia~~L~~~-------~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~ni---d~ 348 (700)
...|.+-.+ |. ....|+.|++.+.+.+... ..++..+.|...+-.+..-+|++++.||-.-+ |.
T Consensus 115 ~~~pvi~v~tpgF~Gs-~~~Gy~~a~~aii~~~~~~~~~~~~~~~~iNli~g~~~~pgDl~eik~ll~~~Gl~~~ilpD~ 193 (417)
T cd01966 115 ADVPVVYVSTPDFEGS-LEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIILPDL 193 (417)
T ss_pred CCCCEEEECCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 7984685168764563-788999999999987436878777778835881564688777999999999829956982365
Q ss_pred CCC-CCCCCHHHHCCCCCCCCCHHHHH---CCCEEEEECC
Q ss_conf 233-44466434012546778787740---1857999738
Q gi|254780859|r 349 RQN-GEYLDPSYGRASYIFNPTIQGIE---EADAMLIIGS 384 (700)
Q Consensus 349 ~~~-~~~~~~~~~~~~~~~~~~i~die---~ad~illiG~ 384 (700)
... ...+...+ ......++++++|+ +|.+.|++|.
T Consensus 194 s~~lDg~~~~~~-~~~~~Ggt~~~ei~~~~~A~~~i~~~~ 232 (417)
T cd01966 194 SGSLDGHLADDW-SPTTTGGTTLEDIRQMGRSAATLAIGE 232 (417)
T ss_pred CCCCCCCCCCCC-CCCCCCCCCHHHHHHHCCCCEEEEECH
T ss_conf 345577877773-445799986999986512807788668
No 368
>PRK01310 hypothetical protein; Validated
Probab=32.42 E-value=29 Score=13.69 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=26.3
Q ss_pred EEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 7704786202472088208867420443288555740799999999980779
Q gi|254780859|r 558 VILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS 609 (700)
Q Consensus 558 VVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~ 609 (700)
-|-|-++-.|=.|.....+||.-.--++-.||-+-|.+-.++..||+.||+.
T Consensus 16 rv~P~Asr~~i~G~~~d~dG~~~LkvrV~ApP~dGkAN~al~~~LAk~lgvp 67 (106)
T PRK01310 16 RVTPRGGRDAIDGIETLADGRSVLKVRVRAIAEGGEANRAVTELLAKALGVP 67 (106)
T ss_pred EECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9854887562200302777760589999649987758999999999985998
No 369
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=32.27 E-value=29 Score=13.67 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 9999999999688875889999868954612127999645600047999717
Q gi|254780859|r 6 KLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKG 57 (700)
Q Consensus 6 ~~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~ 57 (700)
+|+|||.+.+++ ..|+-+.....|+.=+ -..|+|.+
T Consensus 2 kI~vNGe~~e~~-a~tl~~Ll~elg~~~~---------------~vAvAvN~ 37 (65)
T PRK06488 2 KLFVNGEEIETA-ATTLALLLAELGYEGN---------------WLATAVNG 37 (65)
T ss_pred EEEECCEEEEEC-HHHHHHHHHHCCCCCC---------------CEEEEECC
T ss_conf 899999777700-8689999997298888---------------08999899
No 370
>PRK07561 DNA topoisomerase I; Validated
Probab=31.14 E-value=23 Score=14.47 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=35.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCC--CC--CCC-CCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECC
Q ss_conf 87788878883799899838986--74--777-567787888560210064329010023645432068740033306
Q gi|254780859|r 110 CPICDQGGECDLQDQAIFFGFGS--SR--YSE-EKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGR 182 (700)
Q Consensus 110 Cp~Cd~~GeC~LQd~~~~~g~~~--~r--~~~-~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R 182 (700)
-.-+|.-||-==.+.....+... .| |.+ .|.++..---+| -..||+. +.-+.+-|+-|-+.|...=.+..|
T Consensus 93 ATDpDREGEaIawhl~e~l~~~~~vkRi~F~EITk~AI~~Ai~np-r~id~~L-V~Aq~aRRilDrlVGf~lSp~Lw~ 168 (878)
T PRK07561 93 ATDEDREGESISWHLLQLLKPKVPTKRMVFHEITKEAIQKALDNT-REIDMEL-VHAQETRRILDRLVGYTLSPLLWK 168 (878)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCC-CCCCHHH-HHHHHHHHHHHHHHCCEECHHHHH
T ss_conf 889971406999999998489997068999468999999999685-4168888-999999999886425240599997
No 371
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=30.09 E-value=32 Score=13.43 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=18.7
Q ss_pred EEEEECCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 999968887588999986895461212
Q gi|254780859|r 12 IEIEVPSGFTILQACELAGAEIPRFCF 38 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~gi~IP~~Cy 38 (700)
+.+.|.+|.|+...|++.|+.+-.+.-
T Consensus 1 ~~y~V~~GDTl~~Ia~~~~v~~~~l~~ 27 (46)
T cd00118 1 KTYTVKKGDTLSSIAQRYGISVEELLK 27 (46)
T ss_pred CEEEECCCCCHHHHHHHHCCCHHHHHH
T ss_conf 947989899999999998967999998
No 372
>PRK05474 xylose isomerase; Provisional
Probab=30.02 E-value=22 Score=14.54 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=26.7
Q ss_pred HHHHHCCCCCEECCCCCCCCCHHHHCCC-CCCC----CCHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 8986368772420233444664340125-4677----878774018579997385322573
Q gi|254780859|r 336 LLMQSLGCENFDCRQNGEYLDPSYGRAS-YIFN----PTIQGIEEADAMLIIGSNPRLEAA 391 (700)
Q Consensus 336 ~l~~~lGt~nid~~~~~~~~~~~~~~~~-~~~~----~~i~die~ad~illiG~Np~~~~P 391 (700)
.|+..||.+.+++|-............. .-+. ---+..+.+..-||||+--..+||
T Consensus 86 Ef~~KLgv~yfcFHD~Diapeg~sl~E~~~nl~~ivd~~~~k~~~tgvKLLWgTaNlFshp 146 (437)
T PRK05474 86 EFFEKLGVPYYCFHDVDVAPEGASLKEYNANLDEIVDVLKEKQAETGVKLLWGTANLFSNP 146 (437)
T ss_pred HHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
T ss_conf 9999819965752344458777999999999999999999998864970443133023782
No 373
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=29.61 E-value=32 Score=13.37 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCCC--CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHH-HHCCC
Q ss_conf 95461212799964--5600047999717988702002656645663766685379819989999999999999-82789
Q gi|254780859|r 31 AEIPRFCFHERLSI--AGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFL-LINHP 107 (700)
Q Consensus 31 i~IP~~Cy~~~l~~--~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v~t~s~~v~~~r~~vle~l-l~nHp 107 (700)
..||+.-..--+.+ .|.|--|-|.|.| .-| -+|.- +|..+|-.|.-+.-..+..+=-.-|-. ..+|+
T Consensus 203 ygIpT~VSLNpIMVDGTGMCGaCRVtVgG-e~K--FACVD-------GPEFDgh~VDfdEl~~Rq~~yK~eE~~~~~~~~ 272 (993)
T PRK12775 203 FGVKTMVSLNTIMVDGTGMCGSCRVTVGG-EVK--FACVD-------GPDFDGHKVDFKELHARQKRFKTEEDKANEHFA 272 (993)
T ss_pred CCCCEEEECCCEEECCCCCCCCEEEEECC-EEE--EEECC-------CCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 59975896357447568753413899899-899--99664-------888567244799999998764445400112443
Q ss_pred CCCC
Q ss_conf 9887
Q gi|254780859|r 108 LDCP 111 (700)
Q Consensus 108 ldCp 111 (700)
.-|+
T Consensus 273 ~~c~ 276 (993)
T PRK12775 273 HVCN 276 (993)
T ss_pred CCCC
T ss_conf 3256
No 374
>KOG2525 consensus
Probab=28.82 E-value=30 Score=13.61 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=7.4
Q ss_pred EECCCCCCCCCCE
Q ss_conf 7047862024720
Q gi|254780859|r 559 ILPGAAYTEKSGL 571 (700)
Q Consensus 559 VLP~a~~~Ek~Gt 571 (700)
..|.-++.++.++
T Consensus 403 f~Pni~~~~~~~~ 415 (496)
T KOG2525 403 FMPNITSSSPVGS 415 (496)
T ss_pred ECCCCCCCCCCCC
T ss_conf 5244311587666
No 375
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=28.63 E-value=33 Score=13.25 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=70.3
Q ss_pred CCEEECCHHHHHHHHHH-HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHH
Q ss_conf 22023241456688875-20134453147850432323555478898636877242023344466434012546778787
Q gi|254780859|r 293 GRLKPVSWDYALKAIKS-AVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQ 371 (700)
Q Consensus 293 g~~~~iSWdeAl~~ia~-~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~ 371 (700)
|..-+-+|-+.+...-+ .|. .+.|-+.-+++.--|+++++.-|..-+|.+.....+. .++....
T Consensus 45 GG~lp~~w~~~i~~Ai~~Gld-------IvsGLH~~L~ddp~l~~~A~~~g~~i~DvR~p~~~~~--------~~~g~~~ 109 (302)
T pfam07755 45 GGVLPEAWREVLLEALEAGLD-------VVSGLHEFLSDDPELAAAAKKHGVQIIDVRKPPVDLP--------VATGKAR 109 (302)
T ss_pred CCCCCHHHHHHHHHHHHCCCC-------EEHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCC--------CCCCCCC
T ss_conf 884898999999999982892-------6233577751489899999986997999158999886--------5768401
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECC--CCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHH-HHHHC
Q ss_conf 7401857999738532257310257789997599706616--85012233443048986788888268778899-98723
Q gi|254780859|r 372 GIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVI--GDVGELRYKYEHLGNGSEALADLVSGQHPFFK-KLQEA 448 (700)
Q Consensus 372 die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi--~~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~-~l~~a 448 (700)
+ -++..|+++|+|-..--=.....|.++.++.+.....+ +..+.+-. .+--.--....||++|.-+-+- +..+-
T Consensus 110 ~-~~~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaTGQTGili~--g~Gv~iDav~~DFvaGavE~~v~~~~~~ 186 (302)
T pfam07755 110 E-VKAKRVLTVGTDCAVGKMTTALELERALRERGLNAAFVATGQTGILIA--GYGVPLDAVPADFVAGAVEALVLDAAEE 186 (302)
T ss_pred C-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEE--CCEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 4-798789996057334078999999999997799847997276136881--5247843224766767899999864546
Q ss_pred CCCHHHHHHHHHHCCCC
Q ss_conf 53102354433210474
Q gi|254780859|r 449 TRPLIIVGQGALRASDN 465 (700)
Q Consensus 449 ~~~~ii~G~g~~~~~~g 465 (700)
..-.+|=|+|.+.|+..
T Consensus 187 ~d~iiIEGQgSL~hP~y 203 (302)
T pfam07755 187 DDWIVIEGQGSLSHPAY 203 (302)
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 78799916543236656
No 376
>PRK13568 hofQ putative outer membrane porin HofQ; Provisional
Probab=28.37 E-value=32 Score=13.38 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCEEECCHHHHHHHHHHH
Q ss_conf 220232414566888752
Q gi|254780859|r 293 GRLKPVSWDYALKAIKSA 310 (700)
Q Consensus 293 g~~~~iSWdeAl~~ia~~ 310 (700)
=.++.++|+|||+.|.+-
T Consensus 35 l~l~~vp~~~al~~Il~~ 52 (385)
T PRK13568 35 LRLIEVPWEQALAIILRM 52 (385)
T ss_pred EEEECCCHHHHHHHHHHH
T ss_conf 999699999999999986
No 377
>LOAD_sir2 consensus
Probab=28.20 E-value=34 Score=13.20 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=23.6
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECC
Q ss_conf 7401857999738532257310257789997599706616
Q gi|254780859|r 372 GIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVI 411 (700)
Q Consensus 372 die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi 411 (700)
+++.+|++|++|+-.... |. +.-++.+.++|+..|.+.
T Consensus 176 ~~~~~Dl~lviGTSl~V~-pa-~~l~~~a~~~g~~~v~iN 213 (217)
T LOAD_sir2 176 DLEACDLLLVIGTSLQVY-PA-ASLPLKAPKKGVPIILIN 213 (217)
T ss_pred HHCCCCEEEEECCCCEEC-CH-HHHHHHHHHCCCEEEEEC
T ss_conf 744699999989877352-58-799999998799199987
No 378
>KOG2415 consensus
Probab=28.07 E-value=26 Score=14.04 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=6.0
Q ss_pred CCCEEECCCCCC
Q ss_conf 662220121210
Q gi|254780859|r 201 QGNIIDLCPVGA 212 (700)
Q Consensus 201 ~Gncvd~CPvGA 212 (700)
+-.-+|+|=|||
T Consensus 73 ~~e~~Dv~IVG~ 84 (621)
T KOG2415 73 ESEEVDVVIVGA 84 (621)
T ss_pred HHCCCCEEEECC
T ss_conf 100405899888
No 379
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=27.83 E-value=34 Score=13.16 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCCEEEHHHHHHHHHHHHCCEEEC-CCCCCCCCCE----EEEECCEEEEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 543450221166668874557704-7862024720----8820886742044-328855574079999999998077996
Q gi|254780859|r 538 KQALTVYIGSHGDRGAQSADVILP-GAAYTEKSGL----WVNTEGRVQMGMR-AIFPPGDAKEDWEIICALADELKCSLP 611 (700)
Q Consensus 538 ~~~fvV~~d~~~t~tA~~ADVVLP-~a~~~Ek~Gt----f~N~EgRvQ~~~~-av~p~geak~dw~Il~~La~~LG~~~~ 611 (700)
+...+|.+.|.++..+++||=|+= ...-.-.+|+ |.|.| ..++ -+.|| .-+++...|.+ .|++++
T Consensus 210 ~G~TVI~vTHdm~~v~~~adRvivl~~G~Iv~~G~p~evf~~~~----~l~~~~l~~P----~~~~l~~~L~~-~g~~~~ 280 (304)
T PRK13651 210 KGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYEILNDEK----FLIENKMLPP----KLLNFVNKLIK-KGIPIS 280 (304)
T ss_pred CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCHH----HHHHCCCCCC----HHHHHHHHHHH-CCCCCC
T ss_conf 79999998678999999799999998998999868899867988----9987799998----19999999997-699999
Q ss_pred -CCCHHHHHHHHHHHCC
Q ss_conf -8798999999999781
Q gi|254780859|r 612 -FSSLSQLRSHLYSHHP 627 (700)
Q Consensus 612 -~~~~~ei~~ei~~~~P 627 (700)
.-+.+|+.+||.+...
T Consensus 281 ~~~t~~e~~~~~~~~~~ 297 (304)
T PRK13651 281 KVTSIDELASEINMYLQ 297 (304)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 86889999999999998
No 380
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.83 E-value=33 Score=13.33 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=10.9
Q ss_pred CCCC-CCHHHHHHHHHCCCCCC
Q ss_conf 8878-88379989983898674
Q gi|254780859|r 114 DQGG-ECDLQDQAIFFGFGSSR 134 (700)
Q Consensus 114 d~~G-eC~LQd~~~~~g~~~~r 134 (700)
||.| -|||-...++||....|
T Consensus 9 DKtGLGcDlcRiil~FGL~I~r 30 (69)
T cd04894 9 DKTGLGCDLCRIILEFGLNITR 30 (69)
T ss_pred CCCCCCCHHHHHHHHHCEEEEE
T ss_conf 7557541889999871338982
No 381
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=27.67 E-value=32 Score=13.41 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=16.5
Q ss_pred CEEEEECCCCCCCCCCHH------HHHHHHHHCCCC
Q ss_conf 579997385322573102------577899975997
Q gi|254780859|r 377 DAMLIIGSNPRLEAAVLN------ARIRKRWRRGNF 406 (700)
Q Consensus 377 d~illiG~Np~~~~Pvl~------~rirka~~~g~~ 406 (700)
|+-+-+++-| |-||-.. ..+|+.+.+|+-
T Consensus 154 ~F~I~VAaYP-E~Hpea~~~~~D~~nLK~KVdAGAd 188 (302)
T TIGR00676 154 DFEIGVAAYP-EKHPEAPNLEEDIENLKRKVDAGAD 188 (302)
T ss_pred CCEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 5505564258-8788888889999999998862778
No 382
>pfam07874 DUF1660 Prophage protein (DUF1660). This protein is found in Lactobacillae prophages.
Probab=27.62 E-value=14 Score=16.06 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=11.3
Q ss_pred HCCCHHHCCCCCHHHH
Q ss_conf 1006432901002364
Q gi|254780859|r 151 VKTVMNRCIHCTRCVR 166 (700)
Q Consensus 151 i~~d~~rCI~C~RCVR 166 (700)
.-..+.+++.|+||+-
T Consensus 15 ~p~~~~~~~~C~RC~i 30 (64)
T pfam07874 15 NPFYDYEPRYCYRCEI 30 (64)
T ss_pred CCCEEECCCEEEEEEE
T ss_conf 6530403533446888
No 383
>PHA01976 helix-turn-helix protein
Probab=27.61 E-value=29 Score=13.72 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 5574079999999998077996
Q gi|254780859|r 590 GDAKEDWEIICALADELKCSLP 611 (700)
Q Consensus 590 geak~dw~Il~~La~~LG~~~~ 611 (700)
|.+.|+.+.+..||+.+|...+
T Consensus 38 g~~~P~~d~L~~la~~~~VS~D 59 (67)
T PHA01976 38 DKRLPNLKTLLRLADALGVTLD 59 (67)
T ss_pred CCCCCCHHHHHHHHHHHCCCHH
T ss_conf 8989998999999999797899
No 384
>PRK12465 xylose isomerase; Provisional
Probab=27.51 E-value=25 Score=14.16 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=27.2
Q ss_pred HHHHHCCCCCEECCCCCCCCCHHHHCCC-CCCCCC----HHHHHCCCEEEEECCCCCCCCC
Q ss_conf 8986368772420233444664340125-467787----8774018579997385322573
Q gi|254780859|r 336 LLMQSLGCENFDCRQNGEYLDPSYGRAS-YIFNPT----IQGIEEADAMLIIGSNPRLEAA 391 (700)
Q Consensus 336 ~l~~~lGt~nid~~~~~~~~~~~~~~~~-~~~~~~----i~die~ad~illiG~Np~~~~P 391 (700)
.|+..||.+.+++|-............. .-+..- -+..+.+..-||||+-=..+||
T Consensus 96 Ef~~Klgv~y~cFHD~DiapEg~sl~E~~~nl~~ivd~~~~k~~~tgvKLLWgTANlFshp 156 (445)
T PRK12465 96 EFFTKLGVPYYCFHDIDLAPDADDIGEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHP 156 (445)
T ss_pred HHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 9999969986764045557777899999999999999999986500960443235233680
No 385
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=27.40 E-value=35 Score=13.11 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=16.1
Q ss_pred CCCCCCEEE--------EEECCCCCCCCCEEE
Q ss_conf 344430235--------220121168864366
Q gi|254780859|r 221 TGRSWELTK--------TDSIDVMDALGSAIR 244 (700)
Q Consensus 221 ~~Rpwel~~--------~~SvC~~C~~GC~i~ 244 (700)
.-|||+... .++.|++|+..=..+
T Consensus 21 akRP~~~~~~~~~~~~~~~~~CpfC~gn~~~t 52 (338)
T COG1085 21 AKRPWQGAQEKIAEQTDHDPTCPFCPGNERTT 52 (338)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEC
T ss_conf 67876676554211212588677068964102
No 386
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.04 E-value=35 Score=13.06 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=16.4
Q ss_pred EEEEECCCCCHHHHHHHCCCC
Q ss_conf 999968887588999986895
Q gi|254780859|r 12 IEIEVPSGFTILQACELAGAE 32 (700)
Q Consensus 12 ~~v~v~~g~til~a~~~~gi~ 32 (700)
+++++++|+||-+|.+..|+.
T Consensus 19 ~~v~v~egatV~dAi~~Sgll 39 (99)
T COG2914 19 CRVQLQEGATVEDAILASGLL 39 (99)
T ss_pred EEEEECCCCCHHHHHHHCCHH
T ss_conf 899833676699999860454
No 387
>KOG4730 consensus
Probab=26.98 E-value=36 Score=13.05 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=33.9
Q ss_pred CEEEECCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 1266205875556546622201212-101223323334443023522012116886436675159999885247888777
Q gi|254780859|r 186 AEITTYLEQSLTSEMQGNIIDLCPV-GALTSKPFAFTGRSWELTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESIN 264 (700)
Q Consensus 186 ~~i~~~~~~~~~~e~~Gncvd~CPv-GALt~k~~~~~~Rpwel~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN 264 (700)
+...++.+.|+.|++ ||. .|-| ++.-+.|.|...|.-....-+|..- +-.-+..-.+.|+=+|+.+ ..|.++
T Consensus 14 ~~~S~Pp~~p~r~~~-~~~--~~t~~~tY~afPdr~~c~aanv~yP~teae---L~~lVa~A~~a~~kirvVg-~gHSp~ 86 (518)
T KOG4730 14 TTSSIPPPPPFRCDS-GNT--FCTVANTYGAFPDRSTCKAANVNYPKTEAE---LVELVAAATEAGKKIRVVG-SGHSPS 86 (518)
T ss_pred EEECCCCCCCCCCCC-CCE--EEEEEECCCCCCCHHHHHHCCCCCCCCHHH---HHHHHHHHHHCCCEEEEEC-CCCCCC
T ss_conf 230279999722002-321--554341211157610211204689987999---9999999987486589851-567877
Q ss_pred CCEECCCC
Q ss_conf 74113554
Q gi|254780859|r 265 EEWISDKT 272 (700)
Q Consensus 265 ~g~lC~KG 272 (700)
. .-|..|
T Consensus 87 ~-l~ctdg 93 (518)
T KOG4730 87 K-LVCTDG 93 (518)
T ss_pred C-CEECCC
T ss_conf 6-330465
No 388
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=26.24 E-value=33 Score=13.32 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=7.3
Q ss_pred HHHHHHHCCCCCE
Q ss_conf 7889863687724
Q gi|254780859|r 334 LKLLMQSLGCENF 346 (700)
Q Consensus 334 ~k~l~~~lGt~ni 346 (700)
+.+..+.||-.++
T Consensus 30 l~~~~~~lGFey~ 42 (240)
T PRK10188 30 LQLQTQQLEYDYY 42 (240)
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999997598258
No 389
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=26.23 E-value=37 Score=12.96 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=51.7
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCEEEEEC
Q ss_conf 68887520134453147850432323555478898636877242023344466434012546778787740185799973
Q gi|254780859|r 304 LKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIG 383 (700)
Q Consensus 304 l~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~die~ad~illiG 383 (700)
|..++.-++....+--.++|.+-... .+.++++...|...+..+ ..++.+.|..+.....-|+++++
T Consensus 55 L~~A~~~l~~~~~~~ILfVgtk~qa~--~~v~~~A~~~g~~yv~~R----------WlgG~LTN~~l~~~~ePdlliV~- 121 (204)
T PRK04020 55 IRIAAKFLSRYEPEKILVVSSRQYGQ--KPVKKFAEVVGAKAITGR----------FIPGTLTNPSLKGYIEPDVLVVT- 121 (204)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHHHHHHCCEEECCC----------CCCCCCCCHHHCCCCCCCEEEEE-
T ss_conf 99999999960798499997989999--999999999699068262----------27986568313025689989997-
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHH
Q ss_conf 853225731025778999759970661685012233
Q gi|254780859|r 384 SNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRY 419 (700)
Q Consensus 384 ~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~ 419 (700)
||..++ .-+++|.+.|=-.|.+.+.-.+..+
T Consensus 122 -Dp~~e~----~AV~EA~~l~IPvIaivDTn~dp~~ 152 (204)
T PRK04020 122 -DPRGDA----QAVKEAIEIGIPVVALCDTDNLTSN 152 (204)
T ss_pred -CCCCCH----HHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf -886304----8999998769998998279989111
No 390
>pfam07087 DUF1353 Protein of unknown function (DUF1353). This family consists of several hypothetical bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=25.79 E-value=37 Score=12.91 Aligned_cols=40 Identities=35% Similarity=0.625 Sum_probs=21.9
Q ss_pred EEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEEE
Q ss_conf 999999999688875889999868954612127999645-60004799
Q gi|254780859|r 7 LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIA-GNCRMCLV 53 (700)
Q Consensus 7 ~~Idg~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~-g~CRmClV 53 (700)
..++|.++.||+|. ..-|-.||++++-= ++|. |-..+..|
T Consensus 10 ~~~~g~~i~VP~Gf------~tDgASIPr~~~~~-~~P~~g~~~~Aav 50 (92)
T pfam07087 10 VDANGLEIVVPAGF------KTDGASIPRILWSI-IPPFDGKYLKAAV 50 (92)
T ss_pred EECCCEEEEECCCE------ECCCCCCCHHHHHH-CCCCCCCEEEEEE
T ss_conf 95698799977870------75886688888872-3877655600233
No 391
>cd00583 MutH_Sau3AI MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria. MutH is both sequence-specific and methylation-specific, introducing a nick in the unmethylated strand of a hemi-methylated d(GATC) DNA duplex. MutH is homologous to the type II restriction endonuclease Sau3AI which also recognizes the d(GATC) sequence however, Sau3AI cleaves both strands regardless of their methylation state. The active form of MutH is monomeric while that of Sau3AI is homodimeric. In addition to MutH, MutS, involved in mismatch recognition, and MutL, involved in mediating the interactions between MutH and MutS, are essential in initiating mismatch repair in Escherichia coli.
Probab=25.39 E-value=34 Score=13.23 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=5.1
Q ss_pred CCHHHHHHHH
Q ss_conf 7407999999
Q gi|254780859|r 592 AKEDWEIICA 601 (700)
Q Consensus 592 ak~dw~Il~~ 601 (700)
-|.||+++.+
T Consensus 138 lk~DWe~i~~ 147 (210)
T cd00583 138 LKNDWEEIMD 147 (210)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 392
>pfam07385 DUF1498 Protein of unknown function (DUF1498). This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.
Probab=25.15 E-value=38 Score=12.83 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=9.9
Q ss_pred CCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 85799973853225731025778
Q gi|254780859|r 376 ADAMLIIGSNPRLEAAVLNARIR 398 (700)
Q Consensus 376 ad~illiG~Np~~~~Pvl~~rir 398 (700)
|+-+|++-. -+..|...+++|
T Consensus 88 AEKll~~r~--~Q~~P~H~H~~K 108 (225)
T pfam07385 88 AEKIMIVRK--DQVTPMHFHWHK 108 (225)
T ss_pred CCEEEECCC--CCCCCHHHHHHH
T ss_conf 021565257--863753232354
No 393
>pfam03618 DUF299 Domain of unknown function (DUF299). Family of bacterial proteins with no known function.
Probab=24.83 E-value=39 Score=12.79 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=8.5
Q ss_pred CHHHHCCCCHHHEECCC
Q ss_conf 00000001101100222
Q gi|254780859|r 277 DGLKVQRLDCPYARING 293 (700)
Q Consensus 277 d~~~~dRL~~PliR~~g 293 (700)
+.++.+....|++|...
T Consensus 24 ~~~~~~~~~~p~V~t~e 40 (255)
T pfam03618 24 PGVEFEIHRFPFIRTEE 40 (255)
T ss_pred CCCCEEEEEECCCCCHH
T ss_conf 99971799958949999
No 394
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=24.47 E-value=39 Score=12.74 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 4785043232355547889863687
Q gi|254780859|r 319 GAVVGDLSSVEEIYALKLLMQSLGC 343 (700)
Q Consensus 319 g~~~g~~~t~Ee~y~~k~l~~~lGt 343 (700)
+.+.|+.++.+.+--..++++.||-
T Consensus 2 ~iIMGS~SD~~~m~~a~~~L~~fgi 26 (159)
T TIGR01162 2 GIIMGSDSDLETMKKAAEILEEFGI 26 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 6853672547899999999985599
No 395
>PRK12474 hypothetical protein; Provisional
Probab=24.45 E-value=39 Score=12.74 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=22.2
Q ss_pred HHHHHHHHCCC-CCCCCHHHHHHHHHHH
Q ss_conf 99999980779-9687989999999997
Q gi|254780859|r 599 ICALADELKCS-LPFSSLSQLRSHLYSH 625 (700)
Q Consensus 599 l~~La~~LG~~-~~~~~~~ei~~ei~~~ 625 (700)
|..||+.||.. +.-++.+|+.+.|.+.
T Consensus 478 fa~iA~a~G~~g~~V~~~~el~~al~~A 505 (518)
T PRK12474 478 WMKIAEGLGVEASRATTAEEFSAQYAAA 505 (518)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 9999997899899979999999999999
No 396
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=24.27 E-value=40 Score=12.71 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=30.4
Q ss_pred CCCHHHEECCCCEEECCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCHHHHHHHHHHHH-CCC
Q ss_conf 0110110022220232414566888752013445-314785043232355547889863-687
Q gi|254780859|r 283 RLDCPYARINGRLKPVSWDYALKAIKSAVLSSDV-KLGAVVGDLSSVEEIYALKLLMQS-LGC 343 (700)
Q Consensus 283 RL~~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~-~~g~~~g~~~t~Ee~y~~k~l~~~-lGt 343 (700)
.+..||.+..-+-.+-=|+++-..||+.|.+.++ .+..++.+..=.-=.|+.+++... +.+
T Consensus 59 ~l~fPm~~~~~e~~~~~~~e~a~~va~~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~ 121 (234)
T COG2243 59 ELHFPMTTDMREELEDAWEEAAAEVAAELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEV 121 (234)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 787056786288999999999999999997699289998148528887999999853069735
No 397
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE; InterPro: IPR014286 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the clade of sigma factors called RpoE. These proteins are variously annotated as sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=24.25 E-value=20 Score=14.86 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=5.7
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 4145668887520
Q gi|254780859|r 299 SWDYALKAIKSAV 311 (700)
Q Consensus 299 SWdeAl~~ia~~L 311 (700)
+|.|+=|.+-+-+
T Consensus 44 ~~~e~~DVAQe~F 56 (192)
T TIGR02939 44 DSEEVEDVAQEAF 56 (192)
T ss_pred CHHCCCCHHHHHH
T ss_conf 8100340147789
No 398
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase; InterPro: IPR001282 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types . The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells . Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes .; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0006006 glucose metabolic process.
Probab=24.23 E-value=40 Score=12.71 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=11.3
Q ss_pred CCCEEEHHHHHHHHHHH-HCCEEECCCCC
Q ss_conf 54345022116666887-45577047862
Q gi|254780859|r 538 KQALTVYIGSHGDRGAQ-SADVILPGAAY 565 (700)
Q Consensus 538 ~~~fvV~~d~~~t~tA~-~ADVVLP~a~~ 565 (700)
.+.+|+=+.+ +|+.. +=+-=.|++.+
T Consensus 377 ~N~LvIRiQP--DEGv~lkf~~K~PG~~~ 403 (498)
T TIGR00871 377 RNALVIRIQP--DEGVYLKFNAKKPGLAF 403 (498)
T ss_pred CCCEEEEECC--CHHHHHHHHCCCCCCCC
T ss_conf 7606898669--64687854146887544
No 399
>LOAD_cdc45 consensus
Probab=23.52 E-value=41 Score=12.62 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.4
Q ss_pred CCCCCEEEEEE
Q ss_conf 44430235220
Q gi|254780859|r 222 GRSWELTKTDS 232 (700)
Q Consensus 222 ~Rpwel~~~~S 232 (700)
-|||.|.++-.
T Consensus 99 HRP~nL~Nv~~ 109 (578)
T LOAD_cdc45 99 HRPWNLENIYN 109 (578)
T ss_pred CCCCCCCCCCC
T ss_conf 89887341037
No 400
>TIGR00444 mazG MazG family protein; InterPro: IPR011551 This group of prokaryotic proteins has no known function. It includes the uncharacterised protein MazG in Escherichia coli..
Probab=23.37 E-value=41 Score=12.60 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9898989998
Q gi|254780859|r 467 EVMANIAKLV 476 (700)
Q Consensus 467 ~~~~al~~l~ 476 (700)
+.+-++.|||
T Consensus 192 DLLFalvNlA 201 (253)
T TIGR00444 192 DLLFALVNLA 201 (253)
T ss_pred HHHHHHHHHH
T ss_conf 7999999999
No 401
>PRK09138 DNA topoisomerase I; Validated
Probab=23.19 E-value=41 Score=12.57 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=15.2
Q ss_pred CCHHHCCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 0643290100236454320687400333
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVAGVSELGLV 180 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~g~~~lg~~ 180 (700)
.||+ =+.-+..-|+-|-+.|...=.+.
T Consensus 130 id~~-LV~Aq~aRRilDrLvGf~lSp~L 156 (887)
T PRK09138 130 IDQP-LVDAYLARRALDYLVGFTLSPVL 156 (887)
T ss_pred CCHH-HHHHHHHHHHHHEEECCEECHHH
T ss_conf 1888-89999999998713361316999
No 402
>pfam12419 DUF3670 SNF2 Helicase protein. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00271, pfam00176. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=22.97 E-value=42 Score=12.54 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=7.1
Q ss_pred CHHHEECCCCEEECC
Q ss_conf 101100222202324
Q gi|254780859|r 285 DCPYARINGRLKPVS 299 (700)
Q Consensus 285 ~~PliR~~g~~~~iS 299 (700)
++|++|..|+|.+++
T Consensus 96 ~~~LV~~rg~WV~vD 110 (140)
T pfam12419 96 KRPLVRLRGQWVELD 110 (140)
T ss_pred CCCEEEECCEEEEEC
T ss_conf 898099989999968
No 403
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=22.92 E-value=26 Score=14.08 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=10.1
Q ss_pred HHHHHHCCEEECCCCC
Q ss_conf 6688745577047862
Q gi|254780859|r 550 DRGAQSADVILPGAAY 565 (700)
Q Consensus 550 t~tA~~ADVVLP~a~~ 565 (700)
..|-++||+|+|...-
T Consensus 188 EP~K~~AD~IiP~g~~ 203 (220)
T TIGR00235 188 EPTKQYADLIIPEGGK 203 (220)
T ss_pred CCCCCCCCEEECCCCC
T ss_conf 5010146676258988
No 404
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=22.53 E-value=15 Score=15.77 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=17.4
Q ss_pred EEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCC
Q ss_conf 352201211688643667515999988524788877774113554
Q gi|254780859|r 228 TKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKT 272 (700)
Q Consensus 228 ~~~~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KG 272 (700)
..+.-.||.|+. .+.+..+.-. .|..+.-+-.-+.|.+=
T Consensus 11 ~~~~~~CPvCg~--~l~~~~~~~~----IPyFG~V~i~t~~C~~C 49 (201)
T COG1779 11 FETRIDCPVCGG--TLKAHMYLYD----IPYFGEVLISTGVCERC 49 (201)
T ss_pred EEEEECCCCCCC--EEEEEEEEEC----CCCCCEEEEEEEECCCC
T ss_conf 233514885510--2168887413----78555189999981446
No 405
>KOG3641 consensus
Probab=22.46 E-value=36 Score=13.04 Aligned_cols=23 Identities=4% Similarity=0.242 Sum_probs=11.5
Q ss_pred EECCCCCCCCCHH-HH-CCCCHHHE
Q ss_conf 1135542210000-00-00110110
Q gi|254780859|r 267 WISDKTRFIWDGL-KV-QRLDCPYA 289 (700)
Q Consensus 267 ~lC~KGRf~~d~~-~~-dRL~~Pli 289 (700)
-+|.+.++.+-++ |+ ---+.|++
T Consensus 183 sV~e~~~~~~P~~~H~pi~~k~pi~ 207 (650)
T KOG3641 183 SVNENRQYLKPAVLHPPIYFKAPIV 207 (650)
T ss_pred CCCCCCCEECEECCCCCCCCCCCCE
T ss_conf 5131110300001368986676203
No 406
>TIGR02969 mam_aldehyde_ox aldehyde oxidase; InterPro: IPR014313 Members of this entry are mammalian aldehyde oxidase (1.2.3.1 from EC) isozymes, closely related to xanthine dehydrogenase/oxidase.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0051287 NAD binding.
Probab=22.43 E-value=43 Score=12.47 Aligned_cols=160 Identities=21% Similarity=0.295 Sum_probs=95.2
Q ss_pred EEEECCEEE---EECCCCCHHHHHHHCCCCCCCCCCCCCCCC------CCEEEEEEEEECC-------CCCCCCCCCCCC
Q ss_conf 999999999---968887588999986895461212799964------5600047999717-------988702002656
Q gi|254780859|r 6 KLKVDGIEI---EVPSGFTILQACELAGAEIPRFCFHERLSI------AGNCRMCLVEIKG-------IASKPQASCAMN 69 (700)
Q Consensus 6 ~~~Idg~~v---~v~~g~til~a~~~~gi~IP~~Cy~~~l~~------~g~CRmClVeve~-------~~~k~~~sC~t~ 69 (700)
-+++||++| .|.|.+.+|-..++ .=||.- -|.|-.|.|-|.. .+-.|+-+|-+|
T Consensus 4 lfyvnG~kv~e~~vdPe~mllPylrk----------~lrltGt~yGCGGGGCGaCtvmisryn~~tk~irh~P~naCl~P 73 (1334)
T TIGR02969 4 LFYVNGRKVVEKNVDPETMLLPYLRK----------KLRLTGTKYGCGGGGCGACTVMISRYNPVTKKIRHHPVNACLTP 73 (1334)
T ss_pred EEEECCCEEECCCCCCCHHHHHHHHH----------HHEECCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHH
T ss_conf 58875715350368820234345543----------32004555567888732002453201201211002441123332
Q ss_pred CCC--CCCCCCCCCCEEEECCHHHHHHHHHH------------------HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 645--66376668537981998999999999------------------9999827899887788878883799899838
Q gi|254780859|r 70 VSD--LRAGPNGELPEVFTKSSMVKKARAGV------------------MEFLLINHPLDCPICDQGGECDLQDQAIFFG 129 (700)
Q Consensus 70 v~~--gm~~~~~~g~~v~t~s~~v~~~r~~v------------------le~ll~nHpldCp~Cd~~GeC~LQd~~~~~g 129 (700)
+-. |-+.++.|| |-....++.-.|+.+ |--||-||| |-.|..++...|
T Consensus 74 iCslyG~avttveG--iG~t~tr~hPvqeriak~h~tqCGfCtPGmvms~y~llrnhP----------eP~ldql~dalG 141 (1334)
T TIGR02969 74 ICSLYGAAVTTVEG--IGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRNHP----------EPTLDQLTDALG 141 (1334)
T ss_pred HHHHHCCCEEEEEC--CCCCCCEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC----------CCCHHHHHHHHC
T ss_conf 45531241002313--566530101256778765066566546318998999973388----------862788887626
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHH----HHHHCCCCCCEEEECCCCCCEEEECCCCCC
Q ss_conf 9867477756778788856021006432901002364----543206874003330666412662058755
Q gi|254780859|r 130 FGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVR----FITEVAGVSELGLVGRGENAEITTYLEQSL 196 (700)
Q Consensus 130 ~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR----~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~ 196 (700)
-.--|-...+ |+|.---+-|=.-+=|-. +|-==+|..-+.-+..+..|.-.-+.++.+
T Consensus 142 GnlCrC~Gyr---------Pii~a~ktfC~~s~CC~~kenG~CCldqGinG~~e~~e~~~t~P~lf~e~e~ 203 (1334)
T TIGR02969 142 GNLCRCTGYR---------PIIDACKTFCKTSGCCQSKENGVCCLDQGINGLPEFEEGDKTSPELFSEEEF 203 (1334)
T ss_pred CCEEEECCCH---------HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7513205770---------6898888762122221333563255225767752234445567430020346
No 407
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=22.17 E-value=43 Score=12.43 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=33.5
Q ss_pred CHHHHHCCCEEEEECCCCCCC-CCCHHHH-HHHHHHCCCCEEECCCCC
Q ss_conf 787740185799973853225-7310257-789997599706616850
Q gi|254780859|r 369 TIQGIEEADAMLIIGSNPRLE-AAVLNAR-IRKRWRRGNFPIAVIGDV 414 (700)
Q Consensus 369 ~i~die~ad~illiG~Np~~~-~Pvl~~r-irka~~~g~~~I~vi~~~ 414 (700)
-++-|.++|.||+==|||--+ .|+|+.- ||++.|..+.+|+.+.|+
T Consensus 228 a~EAi~~~~~vligPSNPvtSIGpILal~Gire~Lrda~~kVVavSPI 275 (359)
T TIGR01819 228 AIEAIRDADVVLIGPSNPVTSIGPILALPGIREALRDATVKVVAVSPI 275 (359)
T ss_pred HHHHHHCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 999860599899778668111322327256899998369738997164
No 408
>KOG1074 consensus
Probab=22.17 E-value=25 Score=14.10 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=20.2
Q ss_pred EEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 798199899999999999998278
Q gi|254780859|r 83 EVFTKSSMVKKARAGVMEFLLINH 106 (700)
Q Consensus 83 ~v~t~s~~v~~~r~~vle~ll~nH 106 (700)
.+.|.++..+-.|.-.++.+++-|
T Consensus 178 ~~~t~s~~~~~lrqhl~qq~~~~~ 201 (958)
T KOG1074 178 NIPTISEELRVLRQHLIQQMQMTE 201 (958)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 001105889999998888999999
No 409
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=22.00 E-value=44 Score=12.41 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=25.2
Q ss_pred CHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 787740185799973853225731025778999759970661685
Q gi|254780859|r 369 TIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGD 413 (700)
Q Consensus 369 ~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~ 413 (700)
.+.++.++|++|++|+-.... |+ +.-++.+..+|+..+.+..+
T Consensus 163 a~~~~~~~D~llviGTSl~v~-pa-~~l~~~a~~~g~~vi~iN~~ 205 (222)
T cd00296 163 ALEALLEADLVLVIGTSLTVY-PA-ARLLLRAPERGAPVVIINRE 205 (222)
T ss_pred HHHHHHCCCEEEEECCCCEEC-CH-HHHHHHHHHCCCEEEEECCC
T ss_conf 999997099999978895031-07-78999999869909998999
No 410
>PHA00732 hypothetical protein
Probab=21.79 E-value=26 Score=14.05 Aligned_cols=13 Identities=46% Similarity=1.152 Sum_probs=6.3
Q ss_pred CCCCC-CCCCCCCC
Q ss_conf 78998-87788878
Q gi|254780859|r 105 NHPLD-CPICDQGG 117 (700)
Q Consensus 105 nHpld-Cp~Cd~~G 117 (700)
||-|+ ||||.+..
T Consensus 24 ~H~l~kCPVC~~~y 37 (79)
T PHA00732 24 NHVLTKCPVCNNSY 37 (79)
T ss_pred HCCCCCCCCCCHHH
T ss_conf 04652277504789
No 411
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit; InterPro: IPR012791 CoA-transferases catalyse the reversible transfer of of coenzyme A from CoA-thioesters to free acids, and can be divided into three families . Family I includes transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most of the family I enzymes use acetyl-CoA or succinyl-CoA as CoA donors, and are composed of two separate polypeptides, subunits A and B, which generally aggregate as heterodimers or heterotetramers. The eukaryotic enzymes, however, are generally composed of a single two-domain polypetide representing a fusion of the A and B subunits. The transfer of CoA from one substrate to another occurs via a ping pong mechanism which involves the formation of thioester bond between CoA and a conserved glutamate residue at the active site of the enzyme . This entry represents the B subunit of family I CoA-transferases, which contains the conserved active-site glutamate residue. This domain forms a three-layer alpha-beta-alpha sandwich where the central layer is a mixed beta-sheet, against which helices pack from both sides , . The active site is thought to be located at the interface of the A and B subunits and formed by loops from both subunits.; GO: 0008410 CoA-transferase activity.
Probab=21.56 E-value=45 Score=12.35 Aligned_cols=22 Identities=14% Similarity=0.493 Sum_probs=10.9
Q ss_pred CCCH-HHHHHHHHHCCCCHHHHH
Q ss_conf 5310-235443321047469898
Q gi|254780859|r 449 TRPL-IIVGQGALRASDNVEVMA 470 (700)
Q Consensus 449 ~~~~-ii~G~g~~~~~~g~~~~~ 470 (700)
|+++ ++-|.++..|.+++.++|
T Consensus 69 K~~vT~~pGAS~FdSA~SFamIR 91 (208)
T TIGR02428 69 KQPVTLLPGASYFDSADSFAMIR 91 (208)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH
T ss_conf 87576543886015245565540
No 412
>TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process.
Probab=21.56 E-value=45 Score=12.35 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=14.3
Q ss_pred CCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCC
Q ss_conf 654345022116666887455770478620247
Q gi|254780859|r 537 DKQALTVYIGSHGDRGAQSADVILPGAAYTEKS 569 (700)
Q Consensus 537 ~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~ 569 (700)
|.+.|+.-.|.+++-+-+| ||..=-...|
T Consensus 928 DEDsfmLLLDalLNFSkkf----LPdkRGGqMD 956 (1173)
T TIGR00354 928 DEDSFMLLLDALLNFSKKF----LPDKRGGQMD 956 (1173)
T ss_pred HHHHHHHHHHHHHHHHHHH----CCCCCCCCCC
T ss_conf 0568999998887323654----7787879756
No 413
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.51 E-value=42 Score=12.50 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=6.5
Q ss_pred HHHHHHHHCCCC
Q ss_conf 478898636877
Q gi|254780859|r 333 ALKLLMQSLGCE 344 (700)
Q Consensus 333 ~~k~l~~~lGt~ 344 (700)
|.++.++.||.+
T Consensus 33 La~~Ia~~Lg~~ 44 (331)
T PRK02812 33 LAQEVARYLGID 44 (331)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999996898
No 414
>KOG3120 consensus
Probab=21.32 E-value=9.7 Score=17.13 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=4.4
Q ss_pred CCEEECCCCC
Q ss_conf 5577047862
Q gi|254780859|r 556 ADVILPGAAY 565 (700)
Q Consensus 556 ADVVLP~a~~ 565 (700)
-||+.|-..|
T Consensus 204 ~D~ampRkgf 213 (256)
T KOG3120 204 CDVAMPRKGF 213 (256)
T ss_pred CCEECCCCCC
T ss_conf 7432234898
No 415
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=21.32 E-value=37 Score=12.89 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=31.0
Q ss_pred CHHHHHHHHCCCC-H------HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8678888826877-8------899987235310235443321047469898989998874105853
Q gi|254780859|r 427 GSEALADLVSGQH-P------FFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDS 485 (700)
Q Consensus 427 ~~e~l~~~~~g~~-~------~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~ 485 (700)
-.+..++.+.|.. . +++..+++.-|+++ -+.-|.++.+-+-.+..|+..++.-..+
T Consensus 116 vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltL---N~V~HR~Ni~~i~~~i~La~~L~AdrvE 178 (363)
T TIGR02109 116 VDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTL---NFVLHRHNIDQIPEIIELAIELGADRVE 178 (363)
T ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEE---EHCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 78788864125025899999999999961898176---0200242021367899999863898488
No 416
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=21.30 E-value=45 Score=12.31 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=25.6
Q ss_pred CCEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 22023241456688875201344531478504323
Q gi|254780859|r 293 GRLKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSS 327 (700)
Q Consensus 293 g~~~~iSWdeAl~~ia~~L~~~~~~~g~~~g~~~t 327 (700)
++|+++. +|++.+++++++.+...-.++|++..
T Consensus 19 ~~~~~~~--~a~~~~~~~i~~~~PDtIVV~SpHw~ 51 (268)
T cd07371 19 PQWEPRS--WAYERAGASLAASRPDVVLVYSTQWI 51 (268)
T ss_pred CHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 1367999--99999999998659998999879865
No 417
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=21.22 E-value=40 Score=12.67 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=24.3
Q ss_pred HHHHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCHH--------HHHCCCEEEEECCCCCCCCC
Q ss_conf 898636877242023344466434012546778787--------74018579997385322573
Q gi|254780859|r 336 LLMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQ--------GIEEADAMLIIGSNPRLEAA 391 (700)
Q Consensus 336 ~l~~~lGt~nid~~~~~~~~~~~~~~~~~~~~~~i~--------die~ad~illiG~Np~~~~P 391 (700)
.|+..||.+.+++|-......-..... + ..-++ ...++.+-|+||+--..++|
T Consensus 89 Eff~kL~vpyyCFHD~DvaPeG~~l~E-~--~~nl~~ivd~~~~kq~~sgvKLLWgTAN~Fsnp 149 (438)
T COG2115 89 EFFEKLGVPYYCFHDVDVAPEGASLKE-Y--YNNLDEIVDVLAGKQKESGVKLLWGTANLFTNP 149 (438)
T ss_pred HHHHHHCCCEEEECCCCCCCCCCCHHH-H--HHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
T ss_conf 999981997576336655877656899-9--876999999999987740852443342013684
No 418
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=21.15 E-value=45 Score=12.29 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=39.9
Q ss_pred EEEEECCCCCCCCCCHHHH----HHHHHHCCCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH----HHHCC
Q ss_conf 7999738532257310257----789997599706616850122334430489867888882687788999----87235
Q gi|254780859|r 378 AMLIIGSNPRLEAAVLNAR----IRKRWRRGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKK----LQEAT 449 (700)
Q Consensus 378 ~illiG~Np~~~~Pvl~~r----irka~~~g~~~I~vi~~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~~----l~~a~ 449 (700)
+..+||+|+.+++.-+-.| +|+.+.+.-..| +..++|+.|...+...-...+.-+....++.... -.+..
T Consensus 105 yWhiWGaDLYe~~~~~k~rlfy~lRR~a~~rvg~v--~atrGDl~~~~q~~~~~~~~~lyfpt~m~~~l~~~~~~~~~~~ 182 (358)
T PRK02797 105 YWHIWGADLYEDSKGLKFKLFYPLRRLAQKRVGHV--FATRGDLSYAAQRHPRVPGELLYFPTRMDPSLNAMANDRKRAG 182 (358)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEE--EEECCCHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCCCCCCC
T ss_conf 99998817877677589998899999997402459--9964219999987377785499947778867733566656788
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 310235443321047469898989
Q gi|254780859|r 450 RPLIIVGQGALRASDNVEVMANIA 473 (700)
Q Consensus 450 ~~~ii~G~g~~~~~~g~~~~~al~ 473 (700)
+-.|++|-+.....+-.+++.++.
T Consensus 183 ~~tIlvGNSgD~sN~Hie~L~~l~ 206 (358)
T PRK02797 183 KMTILVGNSGDPSNRHIEALRALH 206 (358)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 559997078985400899999999
No 419
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=21.11 E-value=45 Score=12.29 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=52.4
Q ss_pred HHHEECCCCEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCEECCCCCCCCCHHHHCCCC
Q ss_conf 0110022220232414566888752013445314785043232355547889863687-724202334446643401254
Q gi|254780859|r 286 CPYARINGRLKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGC-ENFDCRQNGEYLDPSYGRASY 364 (700)
Q Consensus 286 ~PliR~~g~~~~iSWdeAl~~ia~~L~~~~~~~g~~~g~~~t~Ee~y~~k~l~~~lGt-~nid~~~~~~~~~~~~~~~~~ 364 (700)
++|+++-|| ||.| -||+.+++ ....++|.++|+... | ++-..+|+ .++++.-..-......|.+-.
T Consensus 22 K~LiPvAnK--Pi~~-Yaie~~~~---AGI~diGIvvg~~~~-e------~i~~~~g~g~~fg~kityI~Q~~plGlAHA 88 (361)
T TIGR01208 22 KQLIPVANK--PILQ-YAIEDLIE---AGITDIGIVVGPETG-E------EIKEIVGEGERFGAKITYIVQGEPLGLAHA 88 (361)
T ss_pred CCEEEECCC--CHHH-HHHHHHHH---CCCEEEEEEECCCCC-H------HHEEEECCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 430661687--3236-76888874---697699998469882-1------220232488302328989822787604676
Q ss_pred CCCCCHHH-HHCCCEEEEECCCCCCCC
Q ss_conf 67787877-401857999738532257
Q gi|254780859|r 365 IFNPTIQG-IEEADAMLIIGSNPRLEA 390 (700)
Q Consensus 365 ~~~~~i~d-ie~ad~illiG~Np~~~~ 390 (700)
+.. ..+= +-+.|+|+-+|-|+-+++
T Consensus 89 v~~-A~~fGlgd~~FvvYLGDNl~~~g 114 (361)
T TIGR01208 89 VYV-ARDFGLGDEDFVVYLGDNLIQDG 114 (361)
T ss_pred HHH-HHHHCCCCCCEEEECCCCHHHHH
T ss_conf 457-88847899860797374210423
No 420
>PRK00120 putative deoxyribonucleotide triphosphate pyrophosphatase; Reviewed
Probab=20.78 E-value=46 Score=12.24 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=5.0
Q ss_pred CCCCCCEEECC
Q ss_conf 65466222012
Q gi|254780859|r 198 SEMQGNIIDLC 208 (700)
Q Consensus 198 ~e~~Gncvd~C 208 (700)
++=||-|||..
T Consensus 68 aDDSGL~i~aL 78 (197)
T PRK00120 68 ADDSGLAVDAL 78 (197)
T ss_pred ECCCEEEEHHH
T ss_conf 71467998331
No 421
>TIGR00829 FRU PTS system, Fru family, IIB component; InterPro: IPR003353 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). IIB (2.7.1.69 from EC) is is phosphorylated by phospho-IIA, before the phosphoryl group is transferred to the sugar substrate.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=20.73 E-value=33 Score=13.34 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=13.5
Q ss_pred CHHHHHCCCEEEEECCCCCC
Q ss_conf 78774018579997385322
Q gi|254780859|r 369 TIQGIEEADAMLIIGSNPRL 388 (700)
Q Consensus 369 ~i~die~ad~illiG~Np~~ 388 (700)
|-+||.+||.|+| +.|...
T Consensus 46 T~~di~aAd~VIl-A~D~~i 64 (85)
T TIGR00829 46 TAEDIAAADLVIL-AADREI 64 (85)
T ss_pred CHHHHHCCCEEEE-ECCCCC
T ss_conf 8677610585788-614634
No 422
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.73 E-value=46 Score=12.23 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=20.7
Q ss_pred HHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 74557704786202472088208867420443288555740799999999980779
Q gi|254780859|r 554 QSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS 609 (700)
Q Consensus 554 ~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~ 609 (700)
-.||||.--+|++--.=-|.-.+ ..-|.|-.-|.-.-.. =++++|+.-|.+
T Consensus 261 p~AdvVItNPTH~AVAlkY~~~~----~~AP~VvAKG~d~~Al-kIreiA~e~~Ip 311 (363)
T COG1377 261 PKADVVITNPTHYAVALKYDPEK----MPAPVVVAKGVDLVAL-KIREIAKEHGIP 311 (363)
T ss_pred CCCCEEEECCCCEEEEEEECCCC----CCCCEEEEECCCHHHH-HHHHHHHHCCCC
T ss_conf 99888972766113454665555----8999899817869999-999999984995
No 423
>PRK09335 30S ribosomal protein S26e; Provisional
Probab=20.57 E-value=26 Score=14.03 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=32.0
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 43290100236454320687400333066641266205875556546622201212101223323334443023522012
Q gi|254780859|r 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSID 234 (700)
Q Consensus 155 ~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~SvC 234 (700)
.=||-.|+|||- -+-++..+ .|..-+|....-+++-.. |...|.|. ...-|
T Consensus 20 ~V~C~nCgr~vP------KDKAIk~f------~irniVeaaa~rdi~~a~-------~~lpkly~----------k~~YC 70 (95)
T PRK09335 20 YVQCDNCGRVVP------RDKAVCVT------RPYSPVDPQLAKELEKQG-------AIISRYPV----------TKCYC 70 (95)
T ss_pred CEEECCCCCCCC------CCCEEEEE------EECCCCCHHHHHHHHHCC-------EEECCCCE----------EEEEE
T ss_conf 667376545376------53157889------802663388887898665-------44114540----------03788
Q ss_pred CCCCCCCEEEEECCCCEEEEEECCC
Q ss_conf 1168864366751599998852478
Q gi|254780859|r 235 VMDALGSAIRIDARGCEVMRILPRI 259 (700)
Q Consensus 235 ~~C~~GC~i~v~v~~g~i~rv~~~~ 259 (700)
..|+... +|+|+++.+
T Consensus 71 VSCAIH~---------kiVRvRs~e 86 (95)
T PRK09335 71 VSCAVHL---------GIIKVRPEE 86 (95)
T ss_pred EECCEEC---------CEECCCCHH
T ss_conf 7620125---------602048967
No 424
>TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . .
Probab=20.55 E-value=47 Score=12.21 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=34.9
Q ss_pred EEEECCCCCCCCCCHHH---HHHH-HHHCCCCEEECCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH--HHCCCCH
Q ss_conf 99973853225731025---7789-9975997066168501223344304898678888826877889998--7235310
Q gi|254780859|r 379 MLIIGSNPRLEAAVLNA---RIRK-RWRRGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKKL--QEATRPL 452 (700)
Q Consensus 379 illiG~Np~~~~Pvl~~---rirk-a~~~g~~~I~vi~~~~~l~~~~~~l~~~~e~l~~~~~g~~~~~~~l--~~a~~~~ 452 (700)
.|-=|.+.-.||||+-. ++++ |.+.|..- .++-.|=|+..+..++ ++++++ ...++|.
T Consensus 96 LL~RGi~VLqEHPl~p~d~~~L~~lA~~~Gr~Y--------~vNTFYPh~PAv~~Fi--------~~~~q~rr~~~~~p~ 159 (378)
T TIGR01761 96 LLKRGIHVLQEHPLHPEDIAELLRLAERQGRRY--------LVNTFYPHLPAVRRFI--------EYARQLRRAARKKPA 159 (378)
T ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHHHCCCEE--------EECCCCCCCHHHHHHH--------HHHHHHHHHHHCCCC
T ss_conf 985675156328988778999999999709866--------4206778733789999--------999999999747897
Q ss_pred HHHHHHHHHCCCCHHHH-HHHHHHHHHHHC
Q ss_conf 23544332104746989-898999887410
Q gi|254780859|r 453 IIVGQGALRASDNVEVM-ANIAKLVIDVGG 481 (700)
Q Consensus 453 ii~G~g~~~~~~g~~~~-~al~~l~~~~G~ 481 (700)
++- -+-|.+.+ ..|..+...+|.
T Consensus 160 ~v~------at~g~Ql~ys~LD~~~~~LgG 183 (378)
T TIGR01761 160 FVE------ATTGVQLLYSTLDILARALGG 183 (378)
T ss_pred EEE------EHHHHHHHHHHHHHHHHHHCC
T ss_conf 898------400268999999999998478
No 425
>pfam06397 Desulfoferrod_N Desulfoferrodoxin, N-terminal domain. Most members of this family are small (approximately 36 amino acids) proteins that from homodimeric complexes. Each subunit contains a high-spin iron atom tetrahedrally bound to four cysteinyl sulphur atoms This family has a similar fold to the rubredoxin metal binding domain. It is also found as the N-terminal domain of desulfoferrodoxin, see (pfam01880).
Probab=20.53 E-value=43 Score=12.44 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=12.0
Q ss_pred CCCCCCCCCEEECCCCCC
Q ss_conf 555654662220121210
Q gi|254780859|r 195 SLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 195 ~~~~e~~Gncvd~CPvGA 212 (700)
-..|+.|||.|.+=-.|+
T Consensus 6 vYKC~~CGNiVeV~~~g~ 23 (36)
T pfam06397 6 VYKCEVCGNIVEVLHPGG 23 (36)
T ss_pred EEECCCCCCEEEEEECCC
T ss_conf 886144685899997787
No 426
>TIGR02569 TIGR02569_actnb conserved hypothetical protein TIGR02569; InterPro: IPR013402 This entry has so far only been found in Actinobacteria, including at least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica - always in a single copy per genome. The function is unknown..
Probab=20.50 E-value=39 Score=12.76 Aligned_cols=37 Identities=27% Similarity=0.570 Sum_probs=27.4
Q ss_pred CCCCCCEECCCCCCCCCHHHHC--CCCHHHEECCCCEEECCHH
Q ss_conf 8777741135542210000000--0110110022220232414
Q gi|254780859|r 261 ESINEEWISDKTRFIWDGLKVQ--RLDCPYARINGRLKPVSWD 301 (700)
Q Consensus 261 ~~vN~g~lC~KGRf~~d~~~~d--RL~~PliR~~g~~~~iSWd 301 (700)
++--.+| +.|-| |-+.+| |+-+|++-.||+|.-..|-
T Consensus 41 ~p~rsaW-SarvR---etL~p~GvRvvRP~rSTDGRyvvaGWR 79 (279)
T TIGR02569 41 DPERSAW-SARVR---ETLKPDGVRVVRPVRSTDGRYVVAGWR 79 (279)
T ss_pred CCHHHCC-CHHHC---CCCCCCCEEEEECCCCCCCCEEECCCC
T ss_conf 5112013-02320---234647457850241158754431441
No 427
>COG2906 Bfd Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]
Probab=20.42 E-value=37 Score=12.96 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=5.7
Q ss_pred CCHHHHHHHHCC
Q ss_conf 002364543206
Q gi|254780859|r 161 CTRCVRFITEVA 172 (700)
Q Consensus 161 C~RCVR~c~Ev~ 172 (700)
|++|+|...||.
T Consensus 38 CGkC~~~Arevl 49 (63)
T COG2906 38 CGKCVRAAREVL 49 (63)
T ss_pred HHHHHHHHHHHH
T ss_conf 389999999999
No 428
>pfam00253 Ribosomal_S14 Ribosomal protein S14p/S29e. This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.
Probab=20.37 E-value=29 Score=13.70 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=5.7
Q ss_pred CCHHHCCCCCH
Q ss_conf 06432901002
Q gi|254780859|r 153 TVMNRCIHCTR 163 (700)
Q Consensus 153 ~d~~rCI~C~R 163 (700)
...|||+.|+|
T Consensus 14 r~~nRC~~tGR 24 (55)
T pfam00253 14 RGRNRCVLTGR 24 (55)
T ss_pred HHHCEECCCCC
T ss_conf 76230048899
No 429
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=20.31 E-value=47 Score=12.17 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=5.8
Q ss_pred HHHHHHHCCEE
Q ss_conf 66688745577
Q gi|254780859|r 549 GDRGAQSADVI 559 (700)
Q Consensus 549 ~t~tA~~ADVV 559 (700)
.++..+.||+|
T Consensus 194 l~ell~~sDii 204 (324)
T COG1052 194 LDELLAESDII 204 (324)
T ss_pred HHHHHHHCCEE
T ss_conf 89999769999
No 430
>cd00974 DSRD Desulforedoxin (DSRD) domain; a small non-heme iron domain present in the desulforedoxin (rubredoxin oxidoreductase) and desulfoferrodoxin proteins of some archeael and bacterial methanogens and sulfate/sulfur reducers. Desulforedoxin is a small, single-domain homodimeric protein; each subunit contains an iron atom bound to four cysteinyl sulfur atoms, Fe(S-Cys)4, in a distorted tetrahedral coordination. Its metal center is similar to that found in rubredoxin type proteins. Desulforedoxin is regarded as a potential redox partner for rubredoxin. Desulfoferrodoxin forms a homodimeric protein, with each protomer comprised of two domains, the N-terminal DSRD domain and C-terminal superoxide reductase-like (SORL) domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=20.01 E-value=44 Score=12.38 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=11.9
Q ss_pred CCCCCCCCCEEECCCCCC
Q ss_conf 555654662220121210
Q gi|254780859|r 195 SLTSEMQGNIIDLCPVGA 212 (700)
Q Consensus 195 ~~~~e~~Gncvd~CPvGA 212 (700)
...|+.|||.|.+=-.|+
T Consensus 4 vYKC~~CGNiVeV~~~g~ 21 (34)
T cd00974 4 VYKCEICGNIVEVLNVGG 21 (34)
T ss_pred EEEECCCCCEEEEEECCC
T ss_conf 897132686999997787
Done!