RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G
[Candidatus Liberibacter asiaticus str. psy62]
(700 letters)
>gnl|CDD|181665 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 1300 bits (3366), Expect = 0.0
Identities = 454/692 (65%), Positives = 527/692 (76%), Gaps = 14/692 (2%)
Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63
MVKLKVDG EIEVP G+T+LQACE AGAEIPRFC+HERLSIAGNCRMCLVE+KG KP
Sbjct: 1 MVKLKVDGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPV 60
Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123
ASCAM P GE +FT + MVKKAR GVMEFLLINHPLDCPICDQGGECDLQD
Sbjct: 61 ASCAM--------PVGEGMVIFTNTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQD 112
Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRG 183
QA+ +G +SRY E KRAVEDK +GPLVKTVM RCIHCTRCVRF TEVAGV ELG +GRG
Sbjct: 113 QAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRG 172
Query: 184 ENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAI 243
E+ EITTYLEQ+LTSE+ GN+IDLCPVGALTSKP+AFT R WEL KT+SIDVMDA+GS I
Sbjct: 173 EDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSNI 232
Query: 244 RIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDYA 303
R+D RG EVMRILPR+NE +NEEWISDKTRF WDGLK QRLD PY R NG+L P SWD A
Sbjct: 233 RVDTRGREVMRILPRVNEEVNEEWISDKTRFSWDGLKRQRLDRPYVRKNGKLVPASWDEA 292
Query: 304 LKAIKSAVLSSD-VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRA 362
AI + + + K+ A+ GDL+ VE ++ALK LMQ LG N DCRQ+G LDPS RA
Sbjct: 293 FAAIAAKIKGTPGEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDPSL-RA 351
Query: 363 SYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYE 422
SY+FN TI GIEEADA+L+IG+NPR EA VLNARIRKRWR G F IAVIG+ +L Y YE
Sbjct: 352 SYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADLTYPYE 411
Query: 423 HLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGI 482
+LG G + LADL SG+H F L+ A RP+IIVGQGAL +D V+A AKL VG +
Sbjct: 412 YLGAGPDTLADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAV 471
Query: 483 SDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNIL--DKTDIVFLLGADELDFS-DKQ 539
D WNGF VLHT ASRVG LDLGFVP + +A +L D+++LLGADE+D S K
Sbjct: 472 RDGWNGFNVLHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGADEIDISKGKS 531
Query: 540 ALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEII 599
A +Y G HGDRGA ADVILPGAAYTEKSG +VNTEGRVQ+ RA+FPPG+AKEDW I+
Sbjct: 532 AFVIYQGHHGDRGAHRADVILPGAAYTEKSGTYVNTEGRVQLANRAVFPPGEAKEDWAIL 591
Query: 600 CALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPS-ATDGIYALAKKVGKMQKRNF 658
AL+D L +LP+ SL+QLR+ L + +PHF +D+I PS + ALA K GK+ K F
Sbjct: 592 RALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITPSKDAKDLAALASKKGKLSKAPF 651
Query: 659 VSTVENFYLANSIARASATMAQCSLVAQSCEK 690
S V++FYL N IARASATMA+CS +A
Sbjct: 652 TSPVKDFYLTNPIARASATMAECSALASGRAL 683
>gnl|CDD|162633 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G. This model
represents the G subunit (one of 14: A->N) of the
NADH-quinone oxidoreductase complex I which generally
couples NADH and ubiquinone oxidation/reduction in
bacteria and mammalian mitochondria while translocating
protons, but may act on NADPH and/or plastoquinone in
cyanobacteria and plant chloroplasts. This model
excludes related subunits from formate dehydrogenase
complexes.
Length = 603
Score = 761 bits (1967), Expect = 0.0
Identities = 310/617 (50%), Positives = 395/617 (64%), Gaps = 35/617 (5%)
Query: 7 LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASC 66
+ +DG E+EVP G T+LQAC AG EIPRFC+HE+LSIAGNCRMCLVE++ KP ASC
Sbjct: 1 IFIDGKELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASC 60
Query: 67 AMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAI 126
A V+D ++ T S VKKAR GVMEFLLINHPLDCPICDQGGECDLQDQA+
Sbjct: 61 ATPVTDGM--------KISTNSEKVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAV 112
Query: 127 FFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENA 186
+G SR+ E+KR VE+K +GPL+KT M RCIHCTRCVRF EVAGV +LG++GRG N
Sbjct: 113 MYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNV 172
Query: 187 EITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAIRID 246
EI TY ++L SE+ GN+ID+CPVGALTSKP+AF R WEL T SI V D++G IR+D
Sbjct: 173 EIGTYEGKTLESELSGNLIDICPVGALTSKPYAFKARPWELKSTPSICVHDSVGCNIRVD 232
Query: 247 ARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQ-RLDCPYAR-INGRLKPVSWDYAL 304
R E+MRILPR N+ INEEW+ DK RF +DGL Q RL P R G L VSW AL
Sbjct: 233 ERNGEIMRILPRENDEINEEWLCDKGRFGYDGLNRQDRLTKPLLRNQEGNLLEVSWAEAL 292
Query: 305 KAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASY 364
+ +S ++G + G SS+EE++ALK L++ LG ENFD R + + RA+Y
Sbjct: 293 AIAAEKLKASS-RIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANY 351
Query: 365 IFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGE------LR 418
+FN T+ IEEAD +L++G++ R EA +LN R+RK ++G +A+IG
Sbjct: 352 LFNTTLADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANT 411
Query: 419 YKYEHLGNGSEALADLVSGQHPFF-KKLQEATRPLIIVGQGA---LRASDNVEVMANIAK 474
H G + L D+ SG H L+ A +PLIIVG A L + + ANIAK
Sbjct: 412 NLVFHPGLSPKKLDDIASGAHSDIAAALKAAKKPLIIVGDSAYSHLDGAALISAAANIAK 471
Query: 475 LVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGAD--- 531
+ + WNG +L + A+ VG LDLG ++A L D +FLLGAD
Sbjct: 472 V---IKVRRKEWNGLNILSSGANSVGLLDLGGESTG--LDAALNLGAADALFLLGADLER 526
Query: 532 ELDFSDKQAL------TVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRA 585
LD + + AL +Y G HG A+ ADVILPGAA+TEKSG +VN EGR Q +A
Sbjct: 527 ALDKTARDALSKADAFVIYQGHHGTETAEKADVILPGAAFTEKSGTYVNLEGRAQRFEQA 586
Query: 586 IFPPGDAKEDWEIICAL 602
+ PPG+A+EDW I+ AL
Sbjct: 587 VKPPGEAREDWRILRAL 603
>gnl|CDD|181664 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated.
Length = 776
Score = 551 bits (1423), Expect = e-157
Identities = 255/675 (37%), Positives = 372/675 (55%), Gaps = 75/675 (11%)
Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63
MV++++DG ++EVP G +++A + AG IPRFC+H++LSIA NCRMCLVE++ A KP
Sbjct: 1 MVEIEIDGKKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEK-APKPL 59
Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123
+CA V+D G +VFT+S KA+ VMEFLLINHPLDCPICDQGGEC LQD
Sbjct: 60 PACATPVTD------GM--KVFTRSEKALKAQKSVMEFLLINHPLDCPICDQGGECQLQD 111
Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRG 183
A+ +G +SRY+EEKR V DK +GPL+ T M RCIHCTRCVRF E+AGV ELG++GRG
Sbjct: 112 LAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRG 171
Query: 184 ENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAI 243
E++EITTY+ +++ SE+ GN+IDLCPVGALTSKPF ++ R+WEL++ S+ D+LGS +
Sbjct: 172 EHSEITTYVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSLGSNL 231
Query: 244 RIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQ-RLDCPYARINGRLKPVSWDY 302
+ + VMR++PR NE++NE WISD+ RF ++GL + RL P + G+ K V W+
Sbjct: 232 VVHVKNNRVMRVVPRENEAVNECWISDRDRFSYEGLNSEDRLTKPMIKQGGQWKEVDWET 291
Query: 303 ALKAIKSAVLSSDVK-------LGAVVGDLSSVEEIYALKLLMQSLGCENFDCR-QNGEY 354
AL+ + + + +GA+ S++EE+Y L+ L + LG N D R + ++
Sbjct: 292 ALEYVAEGL--KGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDF 349
Query: 355 LDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRG---------- 404
D + + I + DA+L++GSN R E +L AR+R+ + G
Sbjct: 350 RDDAAAPGAPWLGMPIAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVD 409
Query: 405 ---NFPIA----------------VIGDVGELRYKYEHLGNGSEALADLVSG--QHPFFK 443
FP+A V V + EALA +++ +
Sbjct: 410 DDFLFPVAQRIIVAPSAWADALAGVAAAVAAAKGV-----ALPEALAKVLAAAAARAIAQ 464
Query: 444 KLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALD 503
L R I++G A+ + A +A+ + + G + L A+ VGA
Sbjct: 465 SLANGERAAILLGNLAVNHPQAATLRA-LAQWIAKLTGAT-----LGFLTEAANSVGAHL 518
Query: 504 LGFVPADDTINAMNILD-KTDIVFLLGAD-ELDFSD--------KQALTVYIGSH--GDR 551
G +P +NA +L LL + ELD +D QA V S
Sbjct: 519 AGALPGKGGLNAAAMLAQPRKAYLLLNVEPELDCADPAQARAALNQAEFVVALSAFASKA 578
Query: 552 GAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS-L 610
ADV+LP A +TE SG +VN EGRVQ + P G+A+ W+++ L + L
Sbjct: 579 TLDYADVLLPIAPFTETSGTFVNAEGRVQSFKGVVRPLGEARPAWKVLRVLGNLLGLPGF 638
Query: 611 PFSSLSQLRSHLYSH 625
+ S ++R+
Sbjct: 639 DYESSEEVRAEALGA 653
>gnl|CDD|181150 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated.
Length = 797
Score = 286 bits (733), Expect = 2e-77
Identities = 152/425 (35%), Positives = 225/425 (52%), Gaps = 31/425 (7%)
Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63
+V L +DG+E+ VP G +++A EL G +IPRFC H L G CR CLVE++G KPQ
Sbjct: 4 LVTLTIDGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEG-QRKPQ 62
Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123
ASC V+D G + + S + KA+ GVME LLINHPLDCP+CD+GGEC LQ+
Sbjct: 63 ASCTTTVTD------GMVVKTQLTSPVADKAQHGVMELLLINHPLDCPVCDKGGECPLQN 116
Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVM---NRCIHCTRCVRFITEVAGVSELGLV 180
QA+ G SR+++ KR K I + V+ RC+ C RC RF ++AG + L
Sbjct: 117 QAMSNGRAESRFTDVKRTFP-KPI-NISTQVLLDRERCVLCARCTRFSDQIAGDPFIDLQ 174
Query: 181 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG 240
RG ++ Y + S GN + +CPVGALT + F R ++L T S+ A G
Sbjct: 175 ERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCEHCASG 234
Query: 241 SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWD-GLKVQRLDCPYARI-NGRLKPV 298
A R D R +V+R L + +NEEW DK R+ + + R+ P R +G L+P
Sbjct: 235 CAQRTDHRRGKVLRRLAGDDPEVNEEWNCDKGRWAFTYATQPDRITTPLVRDEDGELEPA 294
Query: 299 SWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYAL-KLLMQSLGCENFDCR------QN 351
SW AL + ++ ++G +VG +VE+ YA K +LG + D R +
Sbjct: 295 SWSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFRARPHSAEE 354
Query: 352 GEYLDPSYGRASYI----FNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFP 407
++L A+ + T +E+A A+L++G P E+ ++ R+RK R+
Sbjct: 355 ADFL------AARVAGRGLGVTYADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLK 408
Query: 408 IAVIG 412
+ I
Sbjct: 409 VYSIA 413
Score = 48.8 bits (117), Expect = 5e-06
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 556 ADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSL 615
ADV+LP A EK+G ++N EGR++ A+ G A D ++ ALADE+ L ++
Sbjct: 596 ADVVLPVAPVAEKAGTFLNWEGRLRPFEAALRTTG-ALSDLRVLDALADEMGVDLGLPTV 654
Query: 616 SQLRSHL 622
+ R+ L
Sbjct: 655 AAARAEL 661
>gnl|CDD|181263 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 847
Score = 254 bits (650), Expect = 8e-68
Identities = 184/732 (25%), Positives = 291/732 (39%), Gaps = 121/732 (16%)
Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLV-EIKGIASKP 62
M + VDG E EV +L+AC G +IP FC+H L G CR C V + +
Sbjct: 1 MATIHVDGKEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPEDTR 60
Query: 63 ---QASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGEC 119
SC +D G + K RA V+E+L+ NHP DCP+C++GG C
Sbjct: 61 GRLVMSCMTPATD------GTF--ISIDDPEAKAFRASVVEWLMTNHPHDCPVCEEGGNC 112
Query: 120 DLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGL 179
LQD + G RY KR ++ +GP + MNRCI C RCVR+ + AG ++LG+
Sbjct: 113 HLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYAGGTDLGV 172
Query: 180 VGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAF-TGRSWELTKTDSIDVMDA 238
G +N + +L SE GN++++CP G T K + R W++ SI +
Sbjct: 173 YGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHCS 232
Query: 239 LGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKV---QRLDCPYARINGRL 295
+G I R E+ RI R N ++N ++ D+ RF V R P R
Sbjct: 233 VGCNISPGERYGELRRIENRYNGAVNGYFLCDRGRF--GYGYVNLKDRPRQPLQRRGDDF 290
Query: 296 KPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYL 355
++ D AL+ + +L K+ + +S+E +AL+ L+ G ENF
Sbjct: 291 ITLNADQALQGA-ADILRQAKKVIGIGSPRASLESNFALRELV---GAENF--------- 337
Query: 356 DPSYG----------------RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRK 399
G R I+ P+++ IE DA+L++G + AA + +R+
Sbjct: 338 --YTGIAAGEQERLQLALKVLREGGIYTPSLREIESYDAVLVLGEDLTQTAARVALAVRQ 395
Query: 400 RWRRGNFPIAV--------------IG------------------DVGELRYK------- 420
+ +A IG D+ Y+
Sbjct: 396 AVKGKAREMAAAQKVADWQIAAVRNIGQRAKSPLFITNVDETRLDDIAAWTYRAPPEDQA 455
Query: 421 ------YEHLGNGSEALADLVSGQHPFF----KKLQEATRPLIIVGQGALRASDNVEVMA 470
L N + A+ L + L A +PLII G A +E A
Sbjct: 456 RLGFAIAHALDNSAPAVDGLDPELQAKADVIAQALAGAKKPLIISGTSAGSP-AIIEAAA 514
Query: 471 NIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGA 530
N+AK + G + G ++ A+ +G LG ++ + + + D V +L
Sbjct: 515 NVAKALKGRG----ADVGITLVAPEANSMGLALLGGGSLEEALEELE-SGRADAVIVLEN 569
Query: 531 DELDFSD--------KQALTVYIGSHGDRG-AQSADVILPGAAYTEKSGLWVNTEGRVQM 581
D + +A V + H + A ++LP A++ E G VN EGR Q
Sbjct: 570 DLYRHAPAARVDAALAKAPLVIVLDHQRTATMEKAHLVLPAASFAESDGTLVNNEGRAQR 629
Query: 582 GMRAIFPP------GDAKEDWEIICALADEL-KCSLPFSSLSQLRSHLYSHHPHFMQLDE 634
++ P E W + +L L + ++ L + L + P + +
Sbjct: 630 -FFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDALAAAIPQLAGIKD 688
Query: 635 IRPSATDGIYAL 646
P AT I
Sbjct: 689 AAPDATFRIRGQ 700
>gnl|CDD|140326 PTZ00305, PTZ00305, NADH:ubiquinone oxidoreductase; Provisional.
Length = 297
Score = 176 bits (448), Expect = 1e-44
Identities = 89/205 (43%), Positives = 125/205 (60%), Gaps = 15/205 (7%)
Query: 12 IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVS 71
+EI +P +L+ E G +P+FC+H LS+AGNCRMCLV++ G SCA
Sbjct: 78 VEI-IPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDG-TQNLVVSCATVA- 134
Query: 72 DLRAGPNGELP--EVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFG 129
LP + T S +V+ AR G +E +LINHP DCPIC+Q CDLQ+ ++ +G
Sbjct: 135 ---------LPGMSIITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYG 185
Query: 130 FGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEIT 189
RY E+KRAV+D P + V+NRCIHCTRCVRF+ E A LG++GRG +EI+
Sbjct: 186 TDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEIS 245
Query: 190 TYLEQ-SLTSEMQGNIIDLCPVGAL 213
T+L++ + ++ + LCPVG L
Sbjct: 246 TFLDELEVKTDNNMPVSQLCPVGKL 270
>gnl|CDD|181450 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 142 bits (361), Expect = 2e-34
Identities = 104/427 (24%), Positives = 172/427 (40%), Gaps = 67/427 (15%)
Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63
M+ + ++G E E G IL G IP C+ S CR+C+VE G K
Sbjct: 1 MITITINGKECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADG---KRV 57
Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123
SC + G N + T + + R +M+ +NHPL+C +CD+ GEC+LQ+
Sbjct: 58 YSCNTKAKE---GMN-----ILTNTPNLMDERNAIMQTYDVNHPLECGVCDKSGECELQN 109
Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRG 183
G Y+ + K G + + CI C RCV + G S L V RG
Sbjct: 110 FTHEMGVNHQPYAIKDTHKPHKHWG-KINYDPSLCIVCERCVTVCKDKIGESALKTVPRG 168
Query: 184 ENAEITTYLEQ------SLTSEMQGNIIDL-----------------CPVGALTSKPFAF 220
+A ++ E ++ S+ Q ++I CPVGAL+S F +
Sbjct: 169 LDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSDFQY 228
Query: 221 TGRSWELTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINE---EWISDKTRFIWD 277
T +WEL K + + I D + ++ +I N+ + RF +D
Sbjct: 229 TSNAWELKKIPATCPHCSDCCLIYYDVKHSSILNQESKIYRVSNDFYFNPLCGAGRFAFD 288
Query: 278 GLKVQRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLL 337
D ++ A++A K A +K + + + EE L+ L
Sbjct: 289 FQNEADKD-----------EKAFKEAVEAFKEA---KAIKFNSFITN----EEALILQRL 330
Query: 338 MQSLGCE--NFDCRQNGEYLD--PSYGRASYIFNPTIQGIEEADAMLIIGS-----NPRL 388
+ G + N + + ++L SY + ++ I+ +D +++ GS NP L
Sbjct: 331 KKKFGLKLINEEALKFQQFLKVFSEVSGKSY--SANLEDIKTSDFVVVAGSALKTDNPLL 388
Query: 389 EAAVLNA 395
A+ NA
Sbjct: 389 RYAINNA 395
>gnl|CDD|181037 PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU;
Validated.
Length = 234
Score = 124 bits (313), Expect = 8e-29
Identities = 78/225 (34%), Positives = 105/225 (46%), Gaps = 26/225 (11%)
Query: 3 MMVK-LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASK 61
M VK L +D + G T+L+A AG IP C + LS G CR+CLVEI+G +K
Sbjct: 1 MSVKTLTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGS-NK 59
Query: 62 PQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLI--NHPLDCPICDQGGEC 119
+C V+ E V T + +++ R ++E L NH C +C G C
Sbjct: 60 LLPACVTPVA--------EGMVVQTNTPRLQEYRRMIVELLFAEGNHV--CAVCVANGNC 109
Query: 120 DLQDQAIFFGFGSSR--YSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSEL 177
+LQD AI G R Y +R V D S P NRC+ CTRCVR E+ G
Sbjct: 110 ELQDLAIEVGMDHVRFPYLFPRRPV-DIS-HPRFGIDHNRCVLCTRCVRVCDEIEGAHTW 167
Query: 178 GLVGRGENAEITTYLEQ------SLTSEMQGNIIDLCPVGALTSK 216
+ GRG + + T L Q + TS G + CP GA+ K
Sbjct: 168 DVAGRGAKSRVITDLNQPWGTSETCTS--CGKCVQACPTGAIFRK 210
>gnl|CDD|130652 TIGR01591, Fdh-alpha, formate dehydrogenase, alpha subunit,
archaeal-type. This model is well-defined, with only a
single fragmentary sequence falling between trusted and
noise. The alpha subunit of a version of nitrate
reductase is closely related.
Length = 671
Score = 83.7 bits (207), Expect = 2e-16
Identities = 104/478 (21%), Positives = 167/478 (34%), Gaps = 115/478 (24%)
Query: 238 ALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARINGRLK 296
+G ++ + + +++R+ P N + K F W+ + RL P R + +
Sbjct: 7 GVGCSLNLVVKDGKIVRVEPYQGHKANRGHLCVKGYFAWEFINSKDRLTTPLIREGDKFR 66
Query: 297 PVSWDYA-------LKAIKSAVLSSDVKLGAVVGDLSSVEEIYAL-KLLMQSLGCENFDC 348
VSWD A LK IK + G + + EE Y L KL +G N D
Sbjct: 67 EVSWDEAISYIAEKLKEIKEKYGPDSI--GFIGSSRGTNEENYLLQKLARAVIGTNNVDN 124
Query: 349 ------RQNGEYLDPSYGR------------------------------ASYIFNPTIQG 372
+ L + G A Y+ N G
Sbjct: 125 CARVCHGPSVAGLKQTVGIGAMSNTISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNG 184
Query: 373 -------------IEEADAMLII--GSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGEL 417
+ AD + + G++ L A+ N I + F E
Sbjct: 185 AKIIVIDPRKTETAKIADLHIPLKPGTDIALLNAMANVIIEEGLYDKAFIEKRTEGFEEF 244
Query: 418 R-----YKYEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGA---LRASDNVEVM 469
R Y E++ + + ADL+ + +A I+ G G + + V +
Sbjct: 245 REIVKGYTPEYVEDITGVPADLIRE---AARMYAKAGSAAILWGMGVTQHSQGVETVMAL 301
Query: 470 ANIAKL----------------------VIDVGGISDSWNGF------AVLHTVASRVGA 501
N+A L D+G + D G+ V A G
Sbjct: 302 INLAMLTGNIGKPGGGVNPLRGQNNVQGACDMGALPDFLPGYQPVSDEEVREKFAKAWGV 361
Query: 502 LDLGFVPADDTINAMNILDKTDI--VFLLGADELDFSD------KQALT-----VYIGSH 548
+ L P ++ D+ ++++G D L SD ++AL V
Sbjct: 362 VKLPAEPGLRIPEMIDAAADGDVKALYIMGEDPL-QSDPNTSKVRKALEKLELLVVQDIF 420
Query: 549 GDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606
A+ ADV+LP AA+ EK G + N E R+Q +A+ P G++K DWEII LA+ L
Sbjct: 421 MTETAKYADVVLPAAAWLEKEGTFTNAERRIQRFFKAVEPKGESKPDWEIIQELANAL 478
>gnl|CDD|151118 pfam10588, NADH-G_4Fe-4S_3, NADH-ubiquinone oxidoreductase-G
iron-sulfur binding region.
Length = 41
Score = 75.2 bits (186), Expect = 6e-14
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 95 RAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRY 135
R ++E LL NHPLDCP CD+ G C+LQD A G SR+
Sbjct: 1 RKTILELLLANHPLDCPTCDKNGNCELQDLAYELGVDESRF 41
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 67.1 bits (164), Expect = 2e-11
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 5 VKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKG 57
+ L ++G + G +IL+A AG IP CFH+ L G+C MC+VEIKG
Sbjct: 4 ISLTINGRSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKG 56
>gnl|CDD|150105 pfam09326, DUF1982, Domain of unknown function (DUF1982). Members
of this family of functionally uncharacterized domains
are found in the C-terminal region of various
prokaryotic NADH dehydrogenases.
Length = 48
Score = 57.3 bits (139), Expect = 1e-08
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 633 DEIRPSATDGIYALAKKVGKMQKRNFVSTVENFYLANSIARASATMAQC 681
DE+ P+ + AL+ GK+ K F S +++FYL + I+RAS TMA+C
Sbjct: 1 DEVEPNGWTAL-ALSAAGGKLSKAPFRSPIKDFYLTDPISRASPTMAEC 48
>gnl|CDD|132519 TIGR03479, DMSO_red_II_alp, DMSO reductase family type II enzyme,
molybdopterin subunit. This model represents the
molybdopterin subunit, typically called the alpha
subunit, of various proteins that also contain an
iron-sulfur subunit and a heme b subunit. The group
includes two distinct but very closely related
periplasmic proteins of anaerobic respiration, selenate
reductase and chlorate reductase. Other members of this
family include dimethyl sulphide dehydrogenase,
ethylbenzene dehydrogenase, and an archaeal respiratory
nitrate reductase. This alpha subunit has a
twin-arginine translocation (TAT) signal for
Sec-independent translocation across the plasma
membrane.
Length = 912
Score = 56.3 bits (136), Expect = 2e-08
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 19/136 (13%)
Query: 481 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGAD--------- 531
G +W G + T A ++D G++P K V+++
Sbjct: 510 GNLKAWTGPGLDETGAYLDESIDKGWMPNYPRD------GKDPKVYIVLRGNPFRRAKGA 563
Query: 532 ---ELDFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGR-VQMGMRAIF 587
+ K L V I D A AD++LP A + EK L + R + R +
Sbjct: 564 KAVRENLLPKLELIVDINFRMDSTAMYADIVLPAAWHYEKHDLRTTSGHRFINFFDRPVK 623
Query: 588 PPGDAKEDWEIICALA 603
P G++K DW+I LA
Sbjct: 624 PMGESKTDWQIFALLA 639
>gnl|CDD|162896 TIGR02512, Fe_only_hydrog, hydrogenases, Fe-only. This model
describes iron-only hydrogenases of anaerobic and
microaerophilic bacteria and protozoa. This model is
narrower, and covers a longer stretch of sequence, than
Pfam model pfam02906. This family represents a division
among families that belong to pfam02906, which also
includes proteins such as nuclear prelamin A recognition
factor in animals. Note that this family shows some
heterogeneity in terms of periplasmic, cytosolic, or
hydrogenosome location, NAD or NADP dependence, and
overal protein protein length.
Length = 374
Score = 50.0 bits (120), Expect = 2e-06
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSE---MQGNIIDLCPVG 211
M++CI C RCVR T V V LG + RG E+ + L G +CPVG
Sbjct: 6 MSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVG 65
Query: 212 ALTSK 216
A+T K
Sbjct: 66 AITEK 70
>gnl|CDD|184119 PRK13532, PRK13532, nitrate reductase catalytic subunit;
Provisional.
Length = 830
Score = 47.6 bits (114), Expect = 1e-05
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKED-WEII 599
A +AD+ILP A + EK G + N E R Q + + PG+AK D W+++
Sbjct: 518 ALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVKAPGEAKSDLWQLV 565
>gnl|CDD|130767 TIGR01706, NAPA, periplasmic nitrate reductase, large subunit. The
enzymes from Alicagenes eutrophus and Paracoccus
pantotrophus have been characterized. In E. coli (as
well as other organisms) this gene is part of a large
nitrate reduction operon (napFDAGHBC).
Length = 830
Score = 46.0 bits (109), Expect = 3e-05
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKED-WEII 599
A +AD+ILP A + EK G + N E R Q+ + + PG+A+ D W+++
Sbjct: 518 ALAADLILPSAMWVEKEGAYGNAERRTQVWHQQVLAPGEARSDLWQLV 565
>gnl|CDD|131740 TIGR02693, arsenite_ox_L, arsenite oxidase, large subunit. This
model represents the large subunit of an arsenite
oxidase complex. The small subunit is a Rieske protein.
Homologs to both large and small subunits that score in
the gray zone between the set trusted and noise bit
score cutoffs for the respective models are found in
Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
This enzyme acts in energy metabolim by arsenite
oxidation, rather than detoxification by reduction of
arsenate to arsenite prior to export.
Length = 806
Score = 41.1 bits (96), Expect = 9e-04
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELK 607
A++A +ILP A + E + +N E R+++ + + PPG+AK D I +A+ +
Sbjct: 520 AEAAHLILPAAGWGEMNLTSMNGERRMRLYEKFMDPPGEAKPDCLIAAWVANTIA 574
Score = 28.7 bits (64), Expect = 4.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 272 TRFIWDGLKVQRLDCPYARINGRLKPVSWDYAL 304
T + D RL P R+ + + SWD AL
Sbjct: 104 TVWSLDRGTQDRLTYPLLRVGDQFQATSWDDAL 136
>gnl|CDD|162418 TIGR01553, formate-DH-alph, formate dehydrogenase, alpha subunit,
proteobacterial-type. This model is well-defined, with
a large, unpopulated trusted/noise gap.
Length = 1009
Score = 36.4 bits (84), Expect = 0.023
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 559 ILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELK 607
LP A + EK G N+ +Q + PPG+A D +II LA ++
Sbjct: 608 FLPTAVFIEKEGSISNSGRWMQWRYKGPDPPGNAIPDGDIIVELAKRVQ 656
>gnl|CDD|162496 TIGR01701, Fdhalpha-like, oxidoreductase alpha (molybdopterin)
subunit. This model represents a well-defined clade of
oxidoreductase alpha subunits most closely related to a
group of formate dehydrogenases including the E. coli
FdhH protein (TIGR01591). These alpha subunits contain a
molybdopterin cofactor and generally associate with two
other subunits which contain iron-sulfur clusters and
cytochromes. The particular subunits with which this
enzyme interacts and the substrate which is reduced is
unknown at this time. In Ralstonia, the gene is
associated with the cbb operon, but is not essential for
CO2 fixation.
Length = 743
Score = 36.3 bits (84), Expect = 0.025
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 283 RLDCPYARING--RLKPVSWDYALKAIKSAVLSSDVK-LGAVVGDLSSVEEIYALKLLMQ 339
RL P + G P+SWD A + I + + S D K + +S E Y +L +
Sbjct: 99 RLTYPLSLRPGSDHYTPISWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFAR 158
Query: 340 SLGCENF-DCRQ-----NGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVL 393
SLG N DC + L S G + ++ E D ++ IGSN +
Sbjct: 159 SLGSNNLPDCSNMCHEPSSVALKRSIG--IGKGSVNLEDFEHTDCLVFIGSNAGTNHPRM 216
Query: 394 NARIRKRWRRGNFPIAV 410
+ +RG IA+
Sbjct: 217 LKYLYAAKKRGAKIIAI 233
>gnl|CDD|171533 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 34.0 bits (78), Expect = 0.12
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 54 EIKGIASKPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLD 109
EIK I +P S + + L AG L +V + V A+ G F L H +D
Sbjct: 213 EIKVIGVEPDDSNCLQAA-LAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVD 267
>gnl|CDD|149396 pfam08323, Glyco_transf_5, Starch synthase catalytic domain.
Length = 229
Score = 32.2 bits (74), Expect = 0.44
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 234 DVMDALGSAIRIDARGCEVMRILPR---INESINEEWISDKT---------RFIWDGLKV 281
DV+ AL A+ G +V ILPR I E E +++ R DG+ V
Sbjct: 19 DVVGALPKALA--KLGHDVRVILPRYGSIPEEKQLEEVAELYVAGGYVGVARLEVDGVDV 76
Query: 282 QRLDCPY 288
LD PY
Sbjct: 77 YFLDNPY 83
>gnl|CDD|162434 TIGR01580, narG, respiratory nitrate reductase, alpha subunit. The
Nitrate reductase enzyme complex allows bacteria to use
nitrate as an electron acceptor during anaerobic growth.
The enzyme complex consists of a tetramer that has an
alpha, beta and 2 gamma subunits. The alpha and beta
subunits have catalytic activity and the gamma subunits
attach the enzyme to the membrane and is a b-type
cytochrome that receives electrons from the quinone pool
and transfers them to the beta subunit. This model is
specific for the alpha subunit for nitrate reductase I
(narG) and nitrate reductase II (narZ) for gram positive
and gram negative bacteria.A few thermophiles and
archaea also match the model The seed members used to
make the model include Nitrate reductases from
Pseudomonas fluorescens, E.coli and B.subtilis. All seed
members are experimentally characterized. Some
unpublished nitrate reductases, that are shorter
sequences, and probably fragments fall in between the
noise and trusted cutoffs. Pfam models pfam00384
(Molybdopterin oxidoreductase) and
pfam01568(Molydopterin dinucleotide binding domain) will
also match the nitrate reductase, alpha subunit.
Length = 1235
Score = 31.9 bits (72), Expect = 0.61
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 556 ADVILPGAAYTEKSGLWVNTEGR---VQMGMRAIFPPGDAKEDWEIICALA 603
+D++LP A + EK + NT + AI P ++K DWEI A+A
Sbjct: 782 SDIVLPTATWYEKDDM--NTSDMHPFIHPLSAAIDPAWESKSDWEIYKAIA 830
>gnl|CDD|179190 PRK00969, PRK00969, hypothetical protein; Provisional.
Length = 508
Score = 31.4 bits (72), Expect = 0.71
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGA 31
M+ +KV+G E+ VP G T+ A + +GA
Sbjct: 1 MMSVKVNGEEVTVPEGSTLKDALKASGA 28
>gnl|CDD|185385 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.
Length = 759
Score = 31.2 bits (71), Expect = 0.93
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRV---QMGMRAIFPPGDAKEDWEIICALADELK 607
A ADV+LP + Y E+ + G+ + R + P GD K W+I L +++
Sbjct: 471 AAYADVVLPESTYLERDEEISDKSGKNPAYALRQRVVEPIGDTKPSWQIFKELGEKMG 528
>gnl|CDD|161791 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the
model.
Length = 328
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 295 LKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLG 342
P +W+ AL+ + + D+S E + A+KLL + G
Sbjct: 247 GNPANWERALELFRRS--------NGNAEDVSDEEILEAIKLLAREEG 286
>gnl|CDD|168200 PRK05713, PRK05713, hypothetical protein; Provisional.
Length = 312
Score = 30.5 bits (69), Expect = 1.6
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLV 53
M +L+V VP+G +L A AG +P C AG+C CLV
Sbjct: 1 MPELRVGERRWSVPAGSNLLDALNAAGVAVPYSCR------AGSCHACLV 44
>gnl|CDD|152452 pfam12017, Transposase_37, Transposase protein. Protein in this
family are transposases found in insects. This region is
about 230 amino acids in length and is found associated
with pfam05485.
Length = 236
Score = 30.2 bits (68), Expect = 1.6
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 356 DPSYGRASYIFNPTIQGIEEA-DAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414
D Y ++Y+ ++G++++ + N R++A LN IRK +RG +A++ D+
Sbjct: 160 DVVYEPSNYVQLAIVRGLKKSWKQPVFFDFNTRMDADTLNNIIRKLHKRGYPVVAIVSDL 219
Query: 415 G 415
G
Sbjct: 220 G 220
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 30.2 bits (68), Expect = 1.8
Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 15/144 (10%)
Query: 388 LEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKKLQE 447
+ A+ A ++ N P+ ++ E + + D + + ++E
Sbjct: 139 IRRAIREAISKRGVAHINLPVDILRKSSEYKGSKNTEVGKVKYSIDFSRAK----ELIKE 194
Query: 448 ATRPLIIVGQGALRASDNVEVMANIAKLVIDVGG-ISDSWNGFAVLHTVASRVGALDLGF 506
+ +P++++G G I + +G I + NG +L + +V +G
Sbjct: 195 SEKPVLLIGGGTRGLGK------EINRFAEKIGAPIIYTLNGKGILPDLDPKVMG-GIGL 247
Query: 507 VPADDTINAMNILDKTDIVFLLGA 530
+ +I AM DK D++ +LG
Sbjct: 248 LGTKPSIEAM---DKADLLIMLGT 268
>gnl|CDD|132312 TIGR03268, methan_mark_3, putative methanogenesis marker protein
3. A single member of this protein family is found in
each of the first ten complete genome sequences of
archaeal methanogens, and nowhere else. This protein
family was detected by the method of partial
phylogenetic profiling (see Haft, et al., 2006). The
functions of proteins in this family are unknown, but
their role is likely one essential to methanogenesis.
Length = 503
Score = 30.1 bits (68), Expect = 1.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 7 LKVDGIEIEVPSGFTILQACELAGAEIP 34
+KV+G E+ VP G T+ A + + A
Sbjct: 1 VKVNGEEVTVPDGSTVRDALKASDAPYI 28
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 29.8 bits (67), Expect = 2.3
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGAL 502
+ L A +P++ VG GA+ A+ + ++ + KL + V F H +
Sbjct: 201 QTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQS------ 254
Query: 503 DLGFVPADDTINAMNILDKTDIVFLLG 529
LG + T A + D++F +G
Sbjct: 255 -LGMLGMHGTYEANMTMHNADVIFAVG 280
>gnl|CDD|181387 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 29.8 bits (68), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 445 LQEATRPLIIVGQGALRA 462
+Q A PLI++G GA R
Sbjct: 193 IQAAKNPLILIGAGANRK 210
>gnl|CDD|183029 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 29.5 bits (67), Expect = 3.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 337 LMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNAR 396
L+Q + ENFDCR E L I ++EAD ML +G +E R
Sbjct: 134 LLQYIKEENFDCRAV-ETL---------I-------LDEADRMLDMGFAQDIETIAAETR 176
Query: 397 IRK 399
RK
Sbjct: 177 WRK 179
>gnl|CDD|180101 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase
subunit F; Provisional.
Length = 409
Score = 29.5 bits (67), Expect = 3.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 16/59 (27%)
Query: 5 VKLKVDGI---EIEVPSGFTILQACELAGAEIPRFCFHERLSIA----GNCRMCLVEIK 56
V +K++G I VP+G +L A LA I LS A G+C C V++K
Sbjct: 36 VTIKINGDPEKTITVPAGGKLLGA--LASNGIF-------LSSACGGGGSCGQCRVKVK 85
>gnl|CDD|131767 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate
name.
Length = 575
Score = 29.4 bits (66), Expect = 3.5
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMANIAK--LVIDV---GGISDSWNGFAVLHTVAS 497
+ L+ A RP+I G GA +A + +E ++ K L+ G I D + + A
Sbjct: 195 QTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYL---GSAY 251
Query: 498 RVGALDLGFVPADDTINAMNILDKTDIVFLLGAD 531
RV PA++ L + D+V +G +
Sbjct: 252 RVAQ-----KPANE------ALFQADLVLFVGNN 274
>gnl|CDD|181391 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 28.8 bits (65), Expect = 4.3
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 24/92 (26%)
Query: 445 LQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRV----- 499
L A RP+II + R ++ + +A+ + V+ V
Sbjct: 217 LAAAERPVIITWRAG-RTAEGFASLRRLAEEL-----------AIPVVEYAGEVVNYPSD 264
Query: 500 GALDLGFVPADDTINAMNILDKTDIVFLLGAD 531
L LG P D L + D+V ++ +D
Sbjct: 265 HPLHLGPDPRAD-------LAEADLVLVVDSD 289
>gnl|CDD|181878 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
Length = 777
Score = 29.0 bits (66), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 449 TRPLIIVGQGALRA 462
TR L+I GQGA+R
Sbjct: 462 TRSLMIFGQGAIRC 475
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 28.8 bits (65), Expect = 5.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 442 FKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG-GISDSWNGFAVL 492
++L A RPL+ +G GA A V+ + D+G G+ S G V+
Sbjct: 197 AERLAAARRPLLWLGGGARHAGAEVKRLV-------DLGFGVVTSTQGRGVV 241
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 28.4 bits (64), Expect = 5.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMA 470
+ A P+I VG GA A + + +A
Sbjct: 200 ALIAAAKNPMIFVGGGAAGAGEEIRELA 227
>gnl|CDD|168991 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 28.4 bits (64), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 444 KLQEATRPLIIVGQGALRASDNVEVMA 470
+L A RPLI+ G GAL A+ + +A
Sbjct: 197 RLAAARRPLILAGGGALAAAAALRALA 223
>gnl|CDD|169939 PRK09517, PRK09517, multifunctional thiamine-phosphate
pyrophosphorylase/synthase/phosphomethylpyrimidine
kinase; Provisional.
Length = 755
Score = 28.4 bits (63), Expect = 6.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 428 SEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEV 468
S ALA L++ K L+ ATR L ALR +D++ V
Sbjct: 454 SAALATLIAAGESVEKALEWATRWL----NEALRHADHLAV 490
>gnl|CDD|181118 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 28.4 bits (64), Expect = 7.1
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGA- 501
K + A RP++ VG G +RA + E+ +A+L G V+ T+ +R GA
Sbjct: 226 KLIAAARRPVLYVGGGVIRAEASAELRE-LAEL-----------TGIPVVTTLMAR-GAF 272
Query: 502 -----LDLGFVPADDTINAMNILDKTDIVFLLGA 530
LG T+ A+ L ++D++ LGA
Sbjct: 273 PDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGA 306
>gnl|CDD|181733 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 28.0 bits (63), Expect = 7.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 445 LQEATRPLIIVGQGALRASDNVEVMANIAK 474
L++A RPLII+G+GA A + ++ + K
Sbjct: 210 LKKAKRPLIILGKGAAYAQADEQIREFVEK 239
>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase;
Validated.
Length = 339
Score = 28.3 bits (64), Expect = 7.7
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 1 MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMC 51
M V L+ G + TIL A G +P C + G C C
Sbjct: 1 MSFQVTLQPSGRQFTAEPDETILDAALRQGIHLPYGC---K---NGACGSC 45
>gnl|CDD|132173 TIGR03129, one_C_dehyd_B, formylmethanofuran dehydrogenase subunit
B. Members of this largely archaeal protein family are
subunit B of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdB)
from molybdenum-containing (FmdB) forms of this enzyme.
Length = 421
Score = 28.0 bits (63), Expect = 8.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 22/69 (31%)
Query: 282 QRLDCPYARINGRLKPVSWDYAL----KAIKSAVL-------SSDV-----------KLG 319
R+ P R NG K VS++ A+ + +K+A S+ KLG
Sbjct: 44 HRITRPMIRKNGDGKEVSYEEAIEKAAEILKNAKRPLIYGWSSTSCEAQRAGLELAEKLG 103
Query: 320 AVVGDLSSV 328
AV+ + +SV
Sbjct: 104 AVIDNTASV 112
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 27.8 bits (62), Expect = 9.9
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 596 WEIICALADELKCSLPFSSLSQLR---SHLYSHHPHFMQLDE----IRPSATDGIYALAK 648
W + D L S + R + L+ H P F LDE + +Y L +
Sbjct: 573 WSAVQDWMDVL------SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626
Query: 649 KVG 651
+ G
Sbjct: 627 EFG 629
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 11,343,333
Number of extensions: 745514
Number of successful extensions: 1415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1366
Number of HSP's successfully gapped: 53
Length of query: 700
Length of database: 5,994,473
Length adjustment: 100
Effective length of query: 600
Effective length of database: 3,833,673
Effective search space: 2300203800
Effective search space used: 2300203800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)