RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62] (700 letters) >gnl|CDD|181665 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated. Length = 687 Score = 1300 bits (3366), Expect = 0.0 Identities = 454/692 (65%), Positives = 527/692 (76%), Gaps = 14/692 (2%) Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63 MVKLKVDG EIEVP G+T+LQACE AGAEIPRFC+HERLSIAGNCRMCLVE+KG KP Sbjct: 1 MVKLKVDGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPV 60 Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123 ASCAM P GE +FT + MVKKAR GVMEFLLINHPLDCPICDQGGECDLQD Sbjct: 61 ASCAM--------PVGEGMVIFTNTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQD 112 Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRG 183 QA+ +G +SRY E KRAVEDK +GPLVKTVM RCIHCTRCVRF TEVAGV ELG +GRG Sbjct: 113 QAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRG 172 Query: 184 ENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAI 243 E+ EITTYLEQ+LTSE+ GN+IDLCPVGALTSKP+AFT R WEL KT+SIDVMDA+GS I Sbjct: 173 EDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSNI 232 Query: 244 RIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSWDYA 303 R+D RG EVMRILPR+NE +NEEWISDKTRF WDGLK QRLD PY R NG+L P SWD A Sbjct: 233 RVDTRGREVMRILPRVNEEVNEEWISDKTRFSWDGLKRQRLDRPYVRKNGKLVPASWDEA 292 Query: 304 LKAIKSAVLSSD-VKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRA 362 AI + + + K+ A+ GDL+ VE ++ALK LMQ LG N DCRQ+G LDPS RA Sbjct: 293 FAAIAAKIKGTPGEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDPSL-RA 351 Query: 363 SYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYE 422 SY+FN TI GIEEADA+L+IG+NPR EA VLNARIRKRWR G F IAVIG+ +L Y YE Sbjct: 352 SYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADLTYPYE 411 Query: 423 HLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGI 482 +LG G + LADL SG+H F L+ A RP+IIVGQGAL +D V+A AKL VG + Sbjct: 412 YLGAGPDTLADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAV 471 Query: 483 SDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNIL--DKTDIVFLLGADELDFS-DKQ 539 D WNGF VLHT ASRVG LDLGFVP + +A +L D+++LLGADE+D S K Sbjct: 472 RDGWNGFNVLHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGADEIDISKGKS 531 Query: 540 ALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEII 599 A +Y G HGDRGA ADVILPGAAYTEKSG +VNTEGRVQ+ RA+FPPG+AKEDW I+ Sbjct: 532 AFVIYQGHHGDRGAHRADVILPGAAYTEKSGTYVNTEGRVQLANRAVFPPGEAKEDWAIL 591 Query: 600 CALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPS-ATDGIYALAKKVGKMQKRNF 658 AL+D L +LP+ SL+QLR+ L + +PHF +D+I PS + ALA K GK+ K F Sbjct: 592 RALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITPSKDAKDLAALASKKGKLSKAPF 651 Query: 659 VSTVENFYLANSIARASATMAQCSLVAQSCEK 690 S V++FYL N IARASATMA+CS +A Sbjct: 652 TSPVKDFYLTNPIARASATMAECSALASGRAL 683 >gnl|CDD|162633 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes. Length = 603 Score = 761 bits (1967), Expect = 0.0 Identities = 310/617 (50%), Positives = 395/617 (64%), Gaps = 35/617 (5%) Query: 7 LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASC 66 + +DG E+EVP G T+LQAC AG EIPRFC+HE+LSIAGNCRMCLVE++ KP ASC Sbjct: 1 IFIDGKELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASC 60 Query: 67 AMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAI 126 A V+D ++ T S VKKAR GVMEFLLINHPLDCPICDQGGECDLQDQA+ Sbjct: 61 ATPVTDGM--------KISTNSEKVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAV 112 Query: 127 FFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENA 186 +G SR+ E+KR VE+K +GPL+KT M RCIHCTRCVRF EVAGV +LG++GRG N Sbjct: 113 MYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNV 172 Query: 187 EITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAIRID 246 EI TY ++L SE+ GN+ID+CPVGALTSKP+AF R WEL T SI V D++G IR+D Sbjct: 173 EIGTYEGKTLESELSGNLIDICPVGALTSKPYAFKARPWELKSTPSICVHDSVGCNIRVD 232 Query: 247 ARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQ-RLDCPYAR-INGRLKPVSWDYAL 304 R E+MRILPR N+ INEEW+ DK RF +DGL Q RL P R G L VSW AL Sbjct: 233 ERNGEIMRILPRENDEINEEWLCDKGRFGYDGLNRQDRLTKPLLRNQEGNLLEVSWAEAL 292 Query: 305 KAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYGRASY 364 + +S ++G + G SS+EE++ALK L++ LG ENFD R + + RA+Y Sbjct: 293 AIAAEKLKASS-RIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANY 351 Query: 365 IFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGE------LR 418 +FN T+ IEEAD +L++G++ R EA +LN R+RK ++G +A+IG Sbjct: 352 LFNTTLADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANT 411 Query: 419 YKYEHLGNGSEALADLVSGQHPFF-KKLQEATRPLIIVGQGA---LRASDNVEVMANIAK 474 H G + L D+ SG H L+ A +PLIIVG A L + + ANIAK Sbjct: 412 NLVFHPGLSPKKLDDIASGAHSDIAAALKAAKKPLIIVGDSAYSHLDGAALISAAANIAK 471 Query: 475 LVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGAD--- 531 + + WNG +L + A+ VG LDLG ++A L D +FLLGAD Sbjct: 472 V---IKVRRKEWNGLNILSSGANSVGLLDLGGESTG--LDAALNLGAADALFLLGADLER 526 Query: 532 ELDFSDKQAL------TVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRA 585 LD + + AL +Y G HG A+ ADVILPGAA+TEKSG +VN EGR Q +A Sbjct: 527 ALDKTARDALSKADAFVIYQGHHGTETAEKADVILPGAAFTEKSGTYVNLEGRAQRFEQA 586 Query: 586 IFPPGDAKEDWEIICAL 602 + PPG+A+EDW I+ AL Sbjct: 587 VKPPGEAREDWRILRAL 603 >gnl|CDD|181664 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated. Length = 776 Score = 551 bits (1423), Expect = e-157 Identities = 255/675 (37%), Positives = 372/675 (55%), Gaps = 75/675 (11%) Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63 MV++++DG ++EVP G +++A + AG IPRFC+H++LSIA NCRMCLVE++ A KP Sbjct: 1 MVEIEIDGKKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEK-APKPL 59 Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123 +CA V+D G +VFT+S KA+ VMEFLLINHPLDCPICDQGGEC LQD Sbjct: 60 PACATPVTD------GM--KVFTRSEKALKAQKSVMEFLLINHPLDCPICDQGGECQLQD 111 Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRG 183 A+ +G +SRY+EEKR V DK +GPL+ T M RCIHCTRCVRF E+AGV ELG++GRG Sbjct: 112 LAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRG 171 Query: 184 ENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALGSAI 243 E++EITTY+ +++ SE+ GN+IDLCPVGALTSKPF ++ R+WEL++ S+ D+LGS + Sbjct: 172 EHSEITTYVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSLGSNL 231 Query: 244 RIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQ-RLDCPYARINGRLKPVSWDY 302 + + VMR++PR NE++NE WISD+ RF ++GL + RL P + G+ K V W+ Sbjct: 232 VVHVKNNRVMRVVPRENEAVNECWISDRDRFSYEGLNSEDRLTKPMIKQGGQWKEVDWET 291 Query: 303 ALKAIKSAVLSSDVK-------LGAVVGDLSSVEEIYALKLLMQSLGCENFDCR-QNGEY 354 AL+ + + + +GA+ S++EE+Y L+ L + LG N D R + ++ Sbjct: 292 ALEYVAEGL--KGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDF 349 Query: 355 LDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRG---------- 404 D + + I + DA+L++GSN R E +L AR+R+ + G Sbjct: 350 RDDAAAPGAPWLGMPIAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVD 409 Query: 405 ---NFPIA----------------VIGDVGELRYKYEHLGNGSEALADLVSG--QHPFFK 443 FP+A V V + EALA +++ + Sbjct: 410 DDFLFPVAQRIIVAPSAWADALAGVAAAVAAAKGV-----ALPEALAKVLAAAAARAIAQ 464 Query: 444 KLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALD 503 L R I++G A+ + A +A+ + + G + L A+ VGA Sbjct: 465 SLANGERAAILLGNLAVNHPQAATLRA-LAQWIAKLTGAT-----LGFLTEAANSVGAHL 518 Query: 504 LGFVPADDTINAMNILD-KTDIVFLLGAD-ELDFSD--------KQALTVYIGSH--GDR 551 G +P +NA +L LL + ELD +D QA V S Sbjct: 519 AGALPGKGGLNAAAMLAQPRKAYLLLNVEPELDCADPAQARAALNQAEFVVALSAFASKA 578 Query: 552 GAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS-L 610 ADV+LP A +TE SG +VN EGRVQ + P G+A+ W+++ L + L Sbjct: 579 TLDYADVLLPIAPFTETSGTFVNAEGRVQSFKGVVRPLGEARPAWKVLRVLGNLLGLPGF 638 Query: 611 PFSSLSQLRSHLYSH 625 + S ++R+ Sbjct: 639 DYESSEEVRAEALGA 653 >gnl|CDD|181150 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated. Length = 797 Score = 286 bits (733), Expect = 2e-77 Identities = 152/425 (35%), Positives = 225/425 (52%), Gaps = 31/425 (7%) Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63 +V L +DG+E+ VP G +++A EL G +IPRFC H L G CR CLVE++G KPQ Sbjct: 4 LVTLTIDGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEG-QRKPQ 62 Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123 ASC V+D G + + S + KA+ GVME LLINHPLDCP+CD+GGEC LQ+ Sbjct: 63 ASCTTTVTD------GMVVKTQLTSPVADKAQHGVMELLLINHPLDCPVCDKGGECPLQN 116 Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVM---NRCIHCTRCVRFITEVAGVSELGLV 180 QA+ G SR+++ KR K I + V+ RC+ C RC RF ++AG + L Sbjct: 117 QAMSNGRAESRFTDVKRTFP-KPI-NISTQVLLDRERCVLCARCTRFSDQIAGDPFIDLQ 174 Query: 181 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG 240 RG ++ Y + S GN + +CPVGALT + F R ++L T S+ A G Sbjct: 175 ERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCEHCASG 234 Query: 241 SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWD-GLKVQRLDCPYARI-NGRLKPV 298 A R D R +V+R L + +NEEW DK R+ + + R+ P R +G L+P Sbjct: 235 CAQRTDHRRGKVLRRLAGDDPEVNEEWNCDKGRWAFTYATQPDRITTPLVRDEDGELEPA 294 Query: 299 SWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYAL-KLLMQSLGCENFDCR------QN 351 SW AL + ++ ++G +VG +VE+ YA K +LG + D R + Sbjct: 295 SWSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFRARPHSAEE 354 Query: 352 GEYLDPSYGRASYI----FNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFP 407 ++L A+ + T +E+A A+L++G P E+ ++ R+RK R+ Sbjct: 355 ADFL------AARVAGRGLGVTYADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLK 408 Query: 408 IAVIG 412 + I Sbjct: 409 VYSIA 413 Score = 48.8 bits (117), Expect = 5e-06 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 556 ADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCSLPFSSL 615 ADV+LP A EK+G ++N EGR++ A+ G A D ++ ALADE+ L ++ Sbjct: 596 ADVVLPVAPVAEKAGTFLNWEGRLRPFEAALRTTG-ALSDLRVLDALADEMGVDLGLPTV 654 Query: 616 SQLRSHL 622 + R+ L Sbjct: 655 AAARAEL 661 >gnl|CDD|181263 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated. Length = 847 Score = 254 bits (650), Expect = 8e-68 Identities = 184/732 (25%), Positives = 291/732 (39%), Gaps = 121/732 (16%) Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLV-EIKGIASKP 62 M + VDG E EV +L+AC G +IP FC+H L G CR C V + + Sbjct: 1 MATIHVDGKEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPEDTR 60 Query: 63 ---QASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGEC 119 SC +D G + K RA V+E+L+ NHP DCP+C++GG C Sbjct: 61 GRLVMSCMTPATD------GTF--ISIDDPEAKAFRASVVEWLMTNHPHDCPVCEEGGNC 112 Query: 120 DLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGL 179 LQD + G RY KR ++ +GP + MNRCI C RCVR+ + AG ++LG+ Sbjct: 113 HLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYAGGTDLGV 172 Query: 180 VGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAF-TGRSWELTKTDSIDVMDA 238 G +N + +L SE GN++++CP G T K + R W++ SI + Sbjct: 173 YGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHCS 232 Query: 239 LGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKV---QRLDCPYARINGRL 295 +G I R E+ RI R N ++N ++ D+ RF V R P R Sbjct: 233 VGCNISPGERYGELRRIENRYNGAVNGYFLCDRGRF--GYGYVNLKDRPRQPLQRRGDDF 290 Query: 296 KPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYL 355 ++ D AL+ + +L K+ + +S+E +AL+ L+ G ENF Sbjct: 291 ITLNADQALQGA-ADILRQAKKVIGIGSPRASLESNFALRELV---GAENF--------- 337 Query: 356 DPSYG----------------RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRK 399 G R I+ P+++ IE DA+L++G + AA + +R+ Sbjct: 338 --YTGIAAGEQERLQLALKVLREGGIYTPSLREIESYDAVLVLGEDLTQTAARVALAVRQ 395 Query: 400 RWRRGNFPIAV--------------IG------------------DVGELRYK------- 420 + +A IG D+ Y+ Sbjct: 396 AVKGKAREMAAAQKVADWQIAAVRNIGQRAKSPLFITNVDETRLDDIAAWTYRAPPEDQA 455 Query: 421 ------YEHLGNGSEALADLVSGQHPFF----KKLQEATRPLIIVGQGALRASDNVEVMA 470 L N + A+ L + L A +PLII G A +E A Sbjct: 456 RLGFAIAHALDNSAPAVDGLDPELQAKADVIAQALAGAKKPLIISGTSAGSP-AIIEAAA 514 Query: 471 NIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGA 530 N+AK + G + G ++ A+ +G LG ++ + + + D V +L Sbjct: 515 NVAKALKGRG----ADVGITLVAPEANSMGLALLGGGSLEEALEELE-SGRADAVIVLEN 569 Query: 531 DELDFSD--------KQALTVYIGSHGDRG-AQSADVILPGAAYTEKSGLWVNTEGRVQM 581 D + +A V + H + A ++LP A++ E G VN EGR Q Sbjct: 570 DLYRHAPAARVDAALAKAPLVIVLDHQRTATMEKAHLVLPAASFAESDGTLVNNEGRAQR 629 Query: 582 GMRAIFPP------GDAKEDWEIICALADEL-KCSLPFSSLSQLRSHLYSHHPHFMQLDE 634 ++ P E W + +L L + ++ L + L + P + + Sbjct: 630 -FFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDALAAAIPQLAGIKD 688 Query: 635 IRPSATDGIYAL 646 P AT I Sbjct: 689 AAPDATFRIRGQ 700 >gnl|CDD|140326 PTZ00305, PTZ00305, NADH:ubiquinone oxidoreductase; Provisional. Length = 297 Score = 176 bits (448), Expect = 1e-44 Identities = 89/205 (43%), Positives = 125/205 (60%), Gaps = 15/205 (7%) Query: 12 IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVS 71 +EI +P +L+ E G +P+FC+H LS+AGNCRMCLV++ G SCA Sbjct: 78 VEI-IPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDG-TQNLVVSCATVA- 134 Query: 72 DLRAGPNGELP--EVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFG 129 LP + T S +V+ AR G +E +LINHP DCPIC+Q CDLQ+ ++ +G Sbjct: 135 ---------LPGMSIITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYG 185 Query: 130 FGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEIT 189 RY E+KRAV+D P + V+NRCIHCTRCVRF+ E A LG++GRG +EI+ Sbjct: 186 TDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEIS 245 Query: 190 TYLEQ-SLTSEMQGNIIDLCPVGAL 213 T+L++ + ++ + LCPVG L Sbjct: 246 TFLDELEVKTDNNMPVSQLCPVGKL 270 >gnl|CDD|181450 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated. Length = 819 Score = 142 bits (361), Expect = 2e-34 Identities = 104/427 (24%), Positives = 172/427 (40%), Gaps = 67/427 (15%) Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQ 63 M+ + ++G E E G IL G IP C+ S CR+C+VE G K Sbjct: 1 MITITINGKECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADG---KRV 57 Query: 64 ASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQD 123 SC + G N + T + + R +M+ +NHPL+C +CD+ GEC+LQ+ Sbjct: 58 YSCNTKAKE---GMN-----ILTNTPNLMDERNAIMQTYDVNHPLECGVCDKSGECELQN 109 Query: 124 QAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRG 183 G Y+ + K G + + CI C RCV + G S L V RG Sbjct: 110 FTHEMGVNHQPYAIKDTHKPHKHWG-KINYDPSLCIVCERCVTVCKDKIGESALKTVPRG 168 Query: 184 ENAEITTYLEQ------SLTSEMQGNIIDL-----------------CPVGALTSKPFAF 220 +A ++ E ++ S+ Q ++I CPVGAL+S F + Sbjct: 169 LDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSDFQY 228 Query: 221 TGRSWELTKTDSIDVMDALGSAIRIDARGCEVMRILPRINESINE---EWISDKTRFIWD 277 T +WEL K + + I D + ++ +I N+ + RF +D Sbjct: 229 TSNAWELKKIPATCPHCSDCCLIYYDVKHSSILNQESKIYRVSNDFYFNPLCGAGRFAFD 288 Query: 278 GLKVQRLDCPYARINGRLKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLL 337 D ++ A++A K A +K + + + EE L+ L Sbjct: 289 FQNEADKD-----------EKAFKEAVEAFKEA---KAIKFNSFITN----EEALILQRL 330 Query: 338 MQSLGCE--NFDCRQNGEYLD--PSYGRASYIFNPTIQGIEEADAMLIIGS-----NPRL 388 + G + N + + ++L SY + ++ I+ +D +++ GS NP L Sbjct: 331 KKKFGLKLINEEALKFQQFLKVFSEVSGKSY--SANLEDIKTSDFVVVAGSALKTDNPLL 388 Query: 389 EAAVLNA 395 A+ NA Sbjct: 389 RYAINNA 395 >gnl|CDD|181037 PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU; Validated. Length = 234 Score = 124 bits (313), Expect = 8e-29 Identities = 78/225 (34%), Positives = 105/225 (46%), Gaps = 26/225 (11%) Query: 3 MMVK-LKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASK 61 M VK L +D + G T+L+A AG IP C + LS G CR+CLVEI+G +K Sbjct: 1 MSVKTLTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGS-NK 59 Query: 62 PQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLI--NHPLDCPICDQGGEC 119 +C V+ E V T + +++ R ++E L NH C +C G C Sbjct: 60 LLPACVTPVA--------EGMVVQTNTPRLQEYRRMIVELLFAEGNHV--CAVCVANGNC 109 Query: 120 DLQDQAIFFGFGSSR--YSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSEL 177 +LQD AI G R Y +R V D S P NRC+ CTRCVR E+ G Sbjct: 110 ELQDLAIEVGMDHVRFPYLFPRRPV-DIS-HPRFGIDHNRCVLCTRCVRVCDEIEGAHTW 167 Query: 178 GLVGRGENAEITTYLEQ------SLTSEMQGNIIDLCPVGALTSK 216 + GRG + + T L Q + TS G + CP GA+ K Sbjct: 168 DVAGRGAKSRVITDLNQPWGTSETCTS--CGKCVQACPTGAIFRK 210 >gnl|CDD|130652 TIGR01591, Fdh-alpha, formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related. Length = 671 Score = 83.7 bits (207), Expect = 2e-16 Identities = 104/478 (21%), Positives = 167/478 (34%), Gaps = 115/478 (24%) Query: 238 ALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGL-KVQRLDCPYARINGRLK 296 +G ++ + + +++R+ P N + K F W+ + RL P R + + Sbjct: 7 GVGCSLNLVVKDGKIVRVEPYQGHKANRGHLCVKGYFAWEFINSKDRLTTPLIREGDKFR 66 Query: 297 PVSWDYA-------LKAIKSAVLSSDVKLGAVVGDLSSVEEIYAL-KLLMQSLGCENFDC 348 VSWD A LK IK + G + + EE Y L KL +G N D Sbjct: 67 EVSWDEAISYIAEKLKEIKEKYGPDSI--GFIGSSRGTNEENYLLQKLARAVIGTNNVDN 124 Query: 349 ------RQNGEYLDPSYGR------------------------------ASYIFNPTIQG 372 + L + G A Y+ N G Sbjct: 125 CARVCHGPSVAGLKQTVGIGAMSNTISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNG 184 Query: 373 -------------IEEADAMLII--GSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGEL 417 + AD + + G++ L A+ N I + F E Sbjct: 185 AKIIVIDPRKTETAKIADLHIPLKPGTDIALLNAMANVIIEEGLYDKAFIEKRTEGFEEF 244 Query: 418 R-----YKYEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGA---LRASDNVEVM 469 R Y E++ + + ADL+ + +A I+ G G + + V + Sbjct: 245 REIVKGYTPEYVEDITGVPADLIRE---AARMYAKAGSAAILWGMGVTQHSQGVETVMAL 301 Query: 470 ANIAKL----------------------VIDVGGISDSWNGF------AVLHTVASRVGA 501 N+A L D+G + D G+ V A G Sbjct: 302 INLAMLTGNIGKPGGGVNPLRGQNNVQGACDMGALPDFLPGYQPVSDEEVREKFAKAWGV 361 Query: 502 LDLGFVPADDTINAMNILDKTDI--VFLLGADELDFSD------KQALT-----VYIGSH 548 + L P ++ D+ ++++G D L SD ++AL V Sbjct: 362 VKLPAEPGLRIPEMIDAAADGDVKALYIMGEDPL-QSDPNTSKVRKALEKLELLVVQDIF 420 Query: 549 GDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 A+ ADV+LP AA+ EK G + N E R+Q +A+ P G++K DWEII LA+ L Sbjct: 421 MTETAKYADVVLPAAAWLEKEGTFTNAERRIQRFFKAVEPKGESKPDWEIIQELANAL 478 >gnl|CDD|151118 pfam10588, NADH-G_4Fe-4S_3, NADH-ubiquinone oxidoreductase-G iron-sulfur binding region. Length = 41 Score = 75.2 bits (186), Expect = 6e-14 Identities = 22/41 (53%), Positives = 27/41 (65%) Query: 95 RAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRY 135 R ++E LL NHPLDCP CD+ G C+LQD A G SR+ Sbjct: 1 RKTILELLLANHPLDCPTCDKNGNCELQDLAYELGVDESRF 41 >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional. Length = 652 Score = 67.1 bits (164), Expect = 2e-11 Identities = 23/53 (43%), Positives = 32/53 (60%) Query: 5 VKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKG 57 + L ++G + G +IL+A AG IP CFH+ L G+C MC+VEIKG Sbjct: 4 ISLTINGRSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKG 56 >gnl|CDD|150105 pfam09326, DUF1982, Domain of unknown function (DUF1982). Members of this family of functionally uncharacterized domains are found in the C-terminal region of various prokaryotic NADH dehydrogenases. Length = 48 Score = 57.3 bits (139), Expect = 1e-08 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 633 DEIRPSATDGIYALAKKVGKMQKRNFVSTVENFYLANSIARASATMAQC 681 DE+ P+ + AL+ GK+ K F S +++FYL + I+RAS TMA+C Sbjct: 1 DEVEPNGWTAL-ALSAAGGKLSKAPFRSPIKDFYLTDPISRASPTMAEC 48 >gnl|CDD|132519 TIGR03479, DMSO_red_II_alp, DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane. Length = 912 Score = 56.3 bits (136), Expect = 2e-08 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 19/136 (13%) Query: 481 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGAD--------- 531 G +W G + T A ++D G++P K V+++ Sbjct: 510 GNLKAWTGPGLDETGAYLDESIDKGWMPNYPRD------GKDPKVYIVLRGNPFRRAKGA 563 Query: 532 ---ELDFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGR-VQMGMRAIF 587 + K L V I D A AD++LP A + EK L + R + R + Sbjct: 564 KAVRENLLPKLELIVDINFRMDSTAMYADIVLPAAWHYEKHDLRTTSGHRFINFFDRPVK 623 Query: 588 PPGDAKEDWEIICALA 603 P G++K DW+I LA Sbjct: 624 PMGESKTDWQIFALLA 639 >gnl|CDD|162896 TIGR02512, Fe_only_hydrog, hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length. Length = 374 Score = 50.0 bits (120), Expect = 2e-06 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSE---MQGNIIDLCPVG 211 M++CI C RCVR T V V LG + RG E+ + L G +CPVG Sbjct: 6 MSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVG 65 Query: 212 ALTSK 216 A+T K Sbjct: 66 AITEK 70 >gnl|CDD|184119 PRK13532, PRK13532, nitrate reductase catalytic subunit; Provisional. Length = 830 Score = 47.6 bits (114), Expect = 1e-05 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKED-WEII 599 A +AD+ILP A + EK G + N E R Q + + PG+AK D W+++ Sbjct: 518 ALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVKAPGEAKSDLWQLV 565 >gnl|CDD|130767 TIGR01706, NAPA, periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC). Length = 830 Score = 46.0 bits (109), Expect = 3e-05 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKED-WEII 599 A +AD+ILP A + EK G + N E R Q+ + + PG+A+ D W+++ Sbjct: 518 ALAADLILPSAMWVEKEGAYGNAERRTQVWHQQVLAPGEARSDLWQLV 565 >gnl|CDD|131740 TIGR02693, arsenite_ox_L, arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export. Length = 806 Score = 41.1 bits (96), Expect = 9e-04 Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELK 607 A++A +ILP A + E + +N E R+++ + + PPG+AK D I +A+ + Sbjct: 520 AEAAHLILPAAGWGEMNLTSMNGERRMRLYEKFMDPPGEAKPDCLIAAWVANTIA 574 Score = 28.7 bits (64), Expect = 4.7 Identities = 11/33 (33%), Positives = 15/33 (45%) Query: 272 TRFIWDGLKVQRLDCPYARINGRLKPVSWDYAL 304 T + D RL P R+ + + SWD AL Sbjct: 104 TVWSLDRGTQDRLTYPLLRVGDQFQATSWDDAL 136 >gnl|CDD|162418 TIGR01553, formate-DH-alph, formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap. Length = 1009 Score = 36.4 bits (84), Expect = 0.023 Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 559 ILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELK 607 LP A + EK G N+ +Q + PPG+A D +II LA ++ Sbjct: 608 FLPTAVFIEKEGSISNSGRWMQWRYKGPDPPGNAIPDGDIIVELAKRVQ 656 >gnl|CDD|162496 TIGR01701, Fdhalpha-like, oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation. Length = 743 Score = 36.3 bits (84), Expect = 0.025 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 11/137 (8%) Query: 283 RLDCPYARING--RLKPVSWDYALKAIKSAVLSSDVK-LGAVVGDLSSVEEIYALKLLMQ 339 RL P + G P+SWD A + I + + S D K + +S E Y +L + Sbjct: 99 RLTYPLSLRPGSDHYTPISWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFAR 158 Query: 340 SLGCENF-DCRQ-----NGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVL 393 SLG N DC + L S G + ++ E D ++ IGSN + Sbjct: 159 SLGSNNLPDCSNMCHEPSSVALKRSIG--IGKGSVNLEDFEHTDCLVFIGSNAGTNHPRM 216 Query: 394 NARIRKRWRRGNFPIAV 410 + +RG IA+ Sbjct: 217 LKYLYAAKKRGAKIIAI 233 >gnl|CDD|171533 PRK12483, PRK12483, threonine dehydratase; Reviewed. Length = 521 Score = 34.0 bits (78), Expect = 0.12 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 54 EIKGIASKPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLD 109 EIK I +P S + + L AG L +V + V A+ G F L H +D Sbjct: 213 EIKVIGVEPDDSNCLQAA-LAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVD 267 >gnl|CDD|149396 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. Length = 229 Score = 32.2 bits (74), Expect = 0.44 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 14/67 (20%) Query: 234 DVMDALGSAIRIDARGCEVMRILPR---INESINEEWISDKT---------RFIWDGLKV 281 DV+ AL A+ G +V ILPR I E E +++ R DG+ V Sbjct: 19 DVVGALPKALA--KLGHDVRVILPRYGSIPEEKQLEEVAELYVAGGYVGVARLEVDGVDV 76 Query: 282 QRLDCPY 288 LD PY Sbjct: 77 YFLDNPY 83 >gnl|CDD|162434 TIGR01580, narG, respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. Pfam models pfam00384 (Molybdopterin oxidoreductase) and pfam01568(Molydopterin dinucleotide binding domain) will also match the nitrate reductase, alpha subunit. Length = 1235 Score = 31.9 bits (72), Expect = 0.61 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 556 ADVILPGAAYTEKSGLWVNTEGR---VQMGMRAIFPPGDAKEDWEIICALA 603 +D++LP A + EK + NT + AI P ++K DWEI A+A Sbjct: 782 SDIVLPTATWYEKDDM--NTSDMHPFIHPLSAAIDPAWESKSDWEIYKAIA 830 >gnl|CDD|179190 PRK00969, PRK00969, hypothetical protein; Provisional. Length = 508 Score = 31.4 bits (72), Expect = 0.71 Identities = 12/28 (42%), Positives = 19/28 (67%) Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGA 31 M+ +KV+G E+ VP G T+ A + +GA Sbjct: 1 MMSVKVNGEEVTVPEGSTLKDALKASGA 28 >gnl|CDD|185385 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional. Length = 759 Score = 31.2 bits (71), Expect = 0.93 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 553 AQSADVILPGAAYTEKSGLWVNTEGRV---QMGMRAIFPPGDAKEDWEIICALADELK 607 A ADV+LP + Y E+ + G+ + R + P GD K W+I L +++ Sbjct: 471 AAYADVVLPESTYLERDEEISDKSGKNPAYALRQRVVEPIGDTKPSWQIFKELGEKMG 528 >gnl|CDD|161791 TIGR00260, thrC, threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. Length = 328 Score = 30.8 bits (70), Expect = 1.1 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 8/48 (16%) Query: 295 LKPVSWDYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLG 342 P +W+ AL+ + + D+S E + A+KLL + G Sbjct: 247 GNPANWERALELFRRS--------NGNAEDVSDEEILEAIKLLAREEG 286 >gnl|CDD|168200 PRK05713, PRK05713, hypothetical protein; Provisional. Length = 312 Score = 30.5 bits (69), Expect = 1.6 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%) Query: 4 MVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLV 53 M +L+V VP+G +L A AG +P C AG+C CLV Sbjct: 1 MPELRVGERRWSVPAGSNLLDALNAAGVAVPYSCR------AGSCHACLV 44 >gnl|CDD|152452 pfam12017, Transposase_37, Transposase protein. Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with pfam05485. Length = 236 Score = 30.2 bits (68), Expect = 1.6 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 356 DPSYGRASYIFNPTIQGIEEA-DAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDV 414 D Y ++Y+ ++G++++ + N R++A LN IRK +RG +A++ D+ Sbjct: 160 DVVYEPSNYVQLAIVRGLKKSWKQPVFFDFNTRMDADTLNNIIRKLHKRGYPVVAIVSDL 219 Query: 415 G 415 G Sbjct: 220 G 220 >gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional. Length = 549 Score = 30.2 bits (68), Expect = 1.8 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 15/144 (10%) Query: 388 LEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYEHLGNGSEALADLVSGQHPFFKKLQE 447 + A+ A ++ N P+ ++ E + + D + + ++E Sbjct: 139 IRRAIREAISKRGVAHINLPVDILRKSSEYKGSKNTEVGKVKYSIDFSRAK----ELIKE 194 Query: 448 ATRPLIIVGQGALRASDNVEVMANIAKLVIDVGG-ISDSWNGFAVLHTVASRVGALDLGF 506 + +P++++G G I + +G I + NG +L + +V +G Sbjct: 195 SEKPVLLIGGGTRGLGK------EINRFAEKIGAPIIYTLNGKGILPDLDPKVMG-GIGL 247 Query: 507 VPADDTINAMNILDKTDIVFLLGA 530 + +I AM DK D++ +LG Sbjct: 248 LGTKPSIEAM---DKADLLIMLGT 268 >gnl|CDD|132312 TIGR03268, methan_mark_3, putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis. Length = 503 Score = 30.1 bits (68), Expect = 1.9 Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 7 LKVDGIEIEVPSGFTILQACELAGAEIP 34 +KV+G E+ VP G T+ A + + A Sbjct: 1 VKVNGEEVTVPDGSTVRDALKASDAPYI 28 >gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit; Validated. Length = 574 Score = 29.8 bits (67), Expect = 2.3 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGAL 502 + L A +P++ VG GA+ A+ + ++ + KL + V F H + Sbjct: 201 QTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQS------ 254 Query: 503 DLGFVPADDTINAMNILDKTDIVFLLG 529 LG + T A + D++F +G Sbjct: 255 -LGMLGMHGTYEANMTMHNADVIFAVG 280 >gnl|CDD|181387 PRK08322, PRK08322, acetolactate synthase; Reviewed. Length = 547 Score = 29.8 bits (68), Expect = 2.3 Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 445 LQEATRPLIIVGQGALRA 462 +Q A PLI++G GA R Sbjct: 193 IQAAKNPLILIGAGANRK 210 >gnl|CDD|183029 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional. Length = 434 Score = 29.5 bits (67), Expect = 3.4 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 17/63 (26%) Query: 337 LMQSLGCENFDCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNAR 396 L+Q + ENFDCR E L I ++EAD ML +G +E R Sbjct: 134 LLQYIKEENFDCRAV-ETL---------I-------LDEADRMLDMGFAQDIETIAAETR 176 Query: 397 IRK 399 RK Sbjct: 177 WRK 179 >gnl|CDD|180101 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional. Length = 409 Score = 29.5 bits (67), Expect = 3.5 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 16/59 (27%) Query: 5 VKLKVDGI---EIEVPSGFTILQACELAGAEIPRFCFHERLSIA----GNCRMCLVEIK 56 V +K++G I VP+G +L A LA I LS A G+C C V++K Sbjct: 36 VTIKINGDPEKTITVPAGGKLLGA--LASNGIF-------LSSACGGGGSCGQCRVKVK 85 >gnl|CDD|131767 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. Length = 575 Score = 29.4 bits (66), Expect = 3.5 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 19/94 (20%) Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMANIAK--LVIDV---GGISDSWNGFAVLHTVAS 497 + L+ A RP+I G GA +A + +E ++ K L+ G I D + + A Sbjct: 195 QTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYL---GSAY 251 Query: 498 RVGALDLGFVPADDTINAMNILDKTDIVFLLGAD 531 RV PA++ L + D+V +G + Sbjct: 252 RVAQ-----KPANE------ALFQADLVLFVGNN 274 >gnl|CDD|181391 PRK08327, PRK08327, acetolactate synthase catalytic subunit; Validated. Length = 569 Score = 28.8 bits (65), Expect = 4.3 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 24/92 (26%) Query: 445 LQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRV----- 499 L A RP+II + R ++ + +A+ + V+ V Sbjct: 217 LAAAERPVIITWRAG-RTAEGFASLRRLAEEL-----------AIPVVEYAGEVVNYPSD 264 Query: 500 GALDLGFVPADDTINAMNILDKTDIVFLLGAD 531 L LG P D L + D+V ++ +D Sbjct: 265 HPLHLGPDPRAD-------LAEADLVLVVDSD 289 >gnl|CDD|181878 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed. Length = 777 Score = 29.0 bits (66), Expect = 4.7 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 449 TRPLIIVGQGALRA 462 TR L+I GQGA+R Sbjct: 462 TRSLMIFGQGAIRC 475 >gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional. Length = 544 Score = 28.8 bits (65), Expect = 5.0 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%) Query: 442 FKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG-GISDSWNGFAVL 492 ++L A RPL+ +G GA A V+ + D+G G+ S G V+ Sbjct: 197 AERLAAARRPLLWLGGGARHAGAEVKRLV-------DLGFGVVTSTQGRGVV 241 >gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional. Length = 542 Score = 28.4 bits (64), Expect = 5.6 Identities = 9/28 (32%), Positives = 14/28 (50%) Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMA 470 + A P+I VG GA A + + +A Sbjct: 200 ALIAAAKNPMIFVGGGAAGAGEEIRELA 227 >gnl|CDD|168991 PRK07524, PRK07524, hypothetical protein; Provisional. Length = 535 Score = 28.4 bits (64), Expect = 6.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 444 KLQEATRPLIIVGQGALRASDNVEVMA 470 +L A RPLI+ G GAL A+ + +A Sbjct: 197 RLAAARRPLILAGGGALAAAAALRALA 223 >gnl|CDD|169939 PRK09517, PRK09517, multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional. Length = 755 Score = 28.4 bits (63), Expect = 6.4 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Query: 428 SEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEV 468 S ALA L++ K L+ ATR L ALR +D++ V Sbjct: 454 SAALATLIAAGESVEKALEWATRWL----NEALRHADHLAV 490 >gnl|CDD|181118 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated. Length = 612 Score = 28.4 bits (64), Expect = 7.1 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 19/94 (20%) Query: 443 KKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGA- 501 K + A RP++ VG G +RA + E+ +A+L G V+ T+ +R GA Sbjct: 226 KLIAAARRPVLYVGGGVIRAEASAELRE-LAEL-----------TGIPVVTTLMAR-GAF 272 Query: 502 -----LDLGFVPADDTINAMNILDKTDIVFLLGA 530 LG T+ A+ L ++D++ LGA Sbjct: 273 PDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGA 306 >gnl|CDD|181733 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated. Length = 569 Score = 28.0 bits (63), Expect = 7.4 Identities = 12/30 (40%), Positives = 20/30 (66%) Query: 445 LQEATRPLIIVGQGALRASDNVEVMANIAK 474 L++A RPLII+G+GA A + ++ + K Sbjct: 210 LKKAKRPLIILGKGAAYAQADEQIREFVEK 239 >gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated. Length = 339 Score = 28.3 bits (64), Expect = 7.7 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 6/51 (11%) Query: 1 MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMC 51 M V L+ G + TIL A G +P C + G C C Sbjct: 1 MSFQVTLQPSGRQFTAEPDETILDAALRQGIHLPYGC---K---NGACGSC 45 >gnl|CDD|132173 TIGR03129, one_C_dehyd_B, formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme. Length = 421 Score = 28.0 bits (63), Expect = 8.8 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 22/69 (31%) Query: 282 QRLDCPYARINGRLKPVSWDYAL----KAIKSAVL-------SSDV-----------KLG 319 R+ P R NG K VS++ A+ + +K+A S+ KLG Sbjct: 44 HRITRPMIRKNGDGKEVSYEEAIEKAAEILKNAKRPLIYGWSSTSCEAQRAGLELAEKLG 103 Query: 320 AVVGDLSSV 328 AV+ + +SV Sbjct: 104 AVIDNTASV 112 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 27.8 bits (62), Expect = 9.9 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 13/63 (20%) Query: 596 WEIICALADELKCSLPFSSLSQLR---SHLYSHHPHFMQLDE----IRPSATDGIYALAK 648 W + D L S + R + L+ H P F LDE + +Y L + Sbjct: 573 WSAVQDWMDVL------SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626 Query: 649 KVG 651 + G Sbjct: 627 EFG 629 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0642 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 11,343,333 Number of extensions: 745514 Number of successful extensions: 1415 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1366 Number of HSP's successfully gapped: 53 Length of query: 700 Length of database: 5,994,473 Length adjustment: 100 Effective length of query: 600 Effective length of database: 3,833,673 Effective search space: 2300203800 Effective search space used: 2300203800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (27.5 bits)