HHsearch alignment for GI: 254780860 and conserved domain: COG1005
>COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion].
Probab=100.00 E-value=0 Score=677.28 Aligned_cols=327 Identities=54% Similarity=0.930 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 68789999999999999999999999999999999999999727899857445318889999999863054645354038
Q gi|254780860|r 4 FIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKIL 83 (348)
Q Consensus 4 ~~~~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~ 83 (348)
T Consensus 3 ~~~~~~~~l~~~~~k~i~ili~~~~~~~~~~w~ERK~~a~~Q~R~GP~~VGp~GllQ~~AD~iKl~fKE~iiP~~adk~~ 82 (332)
T COG1005 3 LFSDMDIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFL 82 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 14777999999999999999999999999999999999998835487600873288999999999850644578775037
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98589899999986653187855235640505789999999999999999875124432101233443101367876689
Q gi|254780860|r 84 FLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGL 163 (348)
Q Consensus 84 f~~~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l 163 (348)
T Consensus 83 f~laPii~~~~a~~~~avIP~~~~~~v~~invgll~~~a~ssl~vygii~~GwASNnKya~lGa~R~aaq~iSYEV~~~l 162 (332)
T COG1005 83 FTLAPIIALIPAFLAFAVIPFGPEWVVANLNVGLLFILAISSLGVYGIILAGWASNNKYALLGALRAAAQMISYEVPLGL 162 (332)
T ss_pred HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88847999999999870205799514418863999999999889999885445417803678999999899787899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999998237898999998510000221111244666999999899999999768754301003576088889875430
Q gi|254780860|r 164 VIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEY 243 (348)
Q Consensus 164 ~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEY 243 (348)
T Consensus 163 sv~~vv~~~GSln~~~IV~~Q~~~------------~W~~~~~p~~Fivf~Ia~laet~R~PFDl~EaE~ElVaG~~tEY 230 (332)
T COG1005 163 SVLAVVMLAGSLNLVDIVNAQSGL------------LWNILLQPIAFIVFLIAMLAETNRFPFDLPEAESELVAGYSTEY 230 (332)
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCC------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCH
T ss_conf 999999994788799999863567------------64588718999999999999848999888754476641564011
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23201158899999999999999973236554312236666568-99999999999999999997410125499998854
Q gi|254780860|r 244 SSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIP-GFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLG 322 (348)
Q Consensus 244 sG~~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~-~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~ 322 (348)
T Consensus 231 Sg~~f~Lf~lgeY~~~~l~s~l~s~LFlGGw~~p~~~~~--~~p~~~iw~~~K~~~~~f~~~~~Ra~~PR~R~DQ~m~lg 308 (332)
T COG1005 231 SGIKFGLFFLGEYINIILFSALVALLFLGGWLGPFPPPG--WVPGPFVWFVLKTAFLFFFFLWLRATLPRYRYDQLMRLG 308 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 118999999899999999999999998358788876543--578650246899999999999999857726699999724
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2789999999999999999999
Q gi|254780860|r 323 WKVFLPLSFAMVLIVSFFLKIY 344 (348)
Q Consensus 323 Wk~llpl~l~~~~~~~~~~~~~ 344 (348)
T Consensus 309 WK~lLPlsl~nlv~ta~~~~~~ 330 (332)
T COG1005 309 WKILLPLTLVNLVLTAALLLLV 330 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999999623