HHsearch alignment for GI: 254780860 and conserved domain: COG1005

>COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion].
Probab=100.00  E-value=0  Score=677.28  Aligned_cols=327  Identities=54%  Similarity=0.930  Sum_probs=311.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             68789999999999999999999999999999999999999727899857445318889999999863054645354038
Q gi|254780860|r    4 FIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKIL   83 (348)
Q Consensus         4 ~~~~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~   83 (348)
T Consensus         3 ~~~~~~~~l~~~~~k~i~ili~~~~~~~~~~w~ERK~~a~~Q~R~GP~~VGp~GllQ~~AD~iKl~fKE~iiP~~adk~~   82 (332)
T COG1005           3 LFSDMDIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFL   82 (332)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             14777999999999999999999999999999999999998835487600873288999999999850644578775037


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98589899999986653187855235640505789999999999999999875124432101233443101367876689
Q gi|254780860|r   84 FLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGL  163 (348)
Q Consensus        84 f~~~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l  163 (348)
T Consensus        83 f~laPii~~~~a~~~~avIP~~~~~~v~~invgll~~~a~ssl~vygii~~GwASNnKya~lGa~R~aaq~iSYEV~~~l  162 (332)
T COG1005          83 FTLAPIIALIPAFLAFAVIPFGPEWVVANLNVGLLFILAISSLGVYGIILAGWASNNKYALLGALRAAAQMISYEVPLGL  162 (332)
T ss_pred             HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88847999999999870205799514418863999999999889999885445417803678999999899787899999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999998237898999998510000221111244666999999899999999768754301003576088889875430
Q gi|254780860|r  164 VIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEY  243 (348)
Q Consensus       164 ~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEY  243 (348)
T Consensus       163 sv~~vv~~~GSln~~~IV~~Q~~~------------~W~~~~~p~~Fivf~Ia~laet~R~PFDl~EaE~ElVaG~~tEY  230 (332)
T COG1005         163 SVLAVVMLAGSLNLVDIVNAQSGL------------LWNILLQPIAFIVFLIAMLAETNRFPFDLPEAESELVAGYSTEY  230 (332)
T ss_pred             HHHHHHHHHCCCCHHHHHHHCCCC------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCH
T ss_conf             999999994788799999863567------------64588718999999999999848999888754476641564011


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23201158899999999999999973236554312236666568-99999999999999999997410125499998854
Q gi|254780860|r  244 SSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIP-GFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLG  322 (348)
Q Consensus       244 sG~~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~-~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~  322 (348)
T Consensus       231 Sg~~f~Lf~lgeY~~~~l~s~l~s~LFlGGw~~p~~~~~--~~p~~~iw~~~K~~~~~f~~~~~Ra~~PR~R~DQ~m~lg  308 (332)
T COG1005         231 SGIKFGLFFLGEYINIILFSALVALLFLGGWLGPFPPPG--WVPGPFVWFVLKTAFLFFFFLWLRATLPRYRYDQLMRLG  308 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             118999999899999999999999998358788876543--578650246899999999999999857726699999724


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2789999999999999999999
Q gi|254780860|r  323 WKVFLPLSFAMVLIVSFFLKIY  344 (348)
Q Consensus       323 Wk~llpl~l~~~~~~~~~~~~~  344 (348)
T Consensus       309 WK~lLPlsl~nlv~ta~~~~~~  330 (332)
T COG1005         309 WKILLPLTLVNLVLTAALLLLV  330 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             7999999999999999999623