HHsearch alignment for GI: 254780860 and conserved domain: MTH00029
>MTH00029 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=672.20 Aligned_cols=323 Identities=50% Similarity=0.905 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348)
Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348)
T Consensus 4 ~~~i~~~i~~l~~~~~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~lKLl~KE~i~p~~a~~~~f~~~P~ 83 (343)
T MTH00029 4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999999999999999999999998758080626824756999999999986567654015999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348)
Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348)
T Consensus 84 i~~~~s~~~~~~iP~~~~~~~~~~~~~il~~l~l~sl~~~~~llaGWsSnskYsllG~~R~~aq~iSYEv~l~l~~l~~~ 163 (343)
T MTH00029 84 ISFTLAILAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI 163 (343)
T ss_pred HHHHHHHHHHEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999988770311587500315748999999999889999886220037864335899999997163274999999999
Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348)
Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348)
T Consensus 164 l~~gs~~l~~i~~~q~~-------------~~~~~~~~~~~i~~li~~laE~nR~PFDl~EaESELVsG~~tEYsg~~f~ 230 (343)
T MTH00029 164 LCVGSLNISEIVISQRS-------------VWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFA 230 (343)
T ss_pred HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf 99448868999999876-------------88876558899999999999858899987764255620226662670579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5889999999999999997323655431223-----------66665689999999999999999999741012549999
Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDI-----------SLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQL 318 (348)
Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~-----------~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~ 318 (348)
T Consensus 231 lffl~EY~~~~~~s~l~~~lFlGGw~~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~K~~~~~~~~i~vR~t~PR~R~Dql 310 (343)
T MTH00029 231 LFFLAEYSNIILMSCMMTIFFLGGWLSPLDGIPTPPEAFSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQL 310 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999999999999999817665533344431012012110012258999999999999999999971722769985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 885427899999999999999999997
Q gi|254780860|r 319 MRLGWKVFLPLSFAMVLIVSFFLKIYT 345 (348)
Q Consensus 319 ~~~~Wk~llpl~l~~~~~~~~~~~~~~ 345 (348)
T Consensus 311 m~l~Wk~lLPlsl~~li~ta~i~~~~~ 337 (343)
T MTH00029 311 MKLLWKTYLPLSLGLVILTAGILIGFN 337 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 997899999999999999999999976