HHsearch alignment for GI: 254780860 and conserved domain: MTH00104
>MTH00104 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=648.17 Aligned_cols=312 Identities=43% Similarity=0.796 Sum_probs=292.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999727899857445318889999999863054645354038985898999999
Q gi|254780860|r 16 AIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILS 95 (348)
Q Consensus 16 ~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~~ 95 (348)
T Consensus 3 ~i~~l~~~~~vll~vaf~tl~ERKvla~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~l~~~~~ 82 (318)
T MTH00104 3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSISMFIIAPILALTLA 82 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999999999999997558180957864021788999999996787701126899999999999999
Q ss_pred HHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86653187855235640505789999999999999999875124432101233443101367876689999999982378
Q gi|254780860|r 96 LSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSL 175 (348)
Q Consensus 96 ~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~ 175 (348)
T Consensus 83 ~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~GwsS~skYs~iG~~R~~aq~iSYEv~l~l~~~~~~~~~gs~ 160 (318)
T MTH00104 83 LTMWIPLPMPYP--LINMNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160 (318)
T ss_pred HHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999734443--103348799999999999999882355159975500598999899998899999999999983678
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98999998510000221111244666999999899999999768754301003576088889875430232011588999
Q gi|254780860|r 176 NLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAE 255 (348)
Q Consensus 176 ~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~e 255 (348)
T Consensus 161 sl~~i~~~q~~-------------~~~~~~~~~~~~i~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~fl~E 227 (318)
T MTH00104 161 TLSTLITTQEH-------------LWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAE 227 (318)
T ss_pred CHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 69999998877-------------99999999999999999999808999997745398865588897038899999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999973236554312236666568999999999999999999974101254999988542789999999999
Q gi|254780860|r 256 YSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVL 335 (348)
Q Consensus 256 y~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~~ 335 (348)
T Consensus 228 Y~~~~~~s~l~~~lFlGg~~~~~~~-----~~~~~~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~llPl~l~~l~ 302 (318)
T MTH00104 228 YANIIMMNALTTILFLGAFHNPYMP-----ELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCM 302 (318)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999995655442026-----78999999999999999999887154331999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999763
Q gi|254780860|r 336 IVSFFLKIYTLI 347 (348)
Q Consensus 336 ~~~~~~~~~~~~ 347 (348)
T Consensus 303 ~~~~~~i~~~~~ 314 (318)
T MTH00104 303 WHISLPIMTASI 314 (318)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999997669