HHsearch alignment for GI: 254780860 and conserved domain: MTH00143
>MTH00143 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=641.97 Aligned_cols=304 Identities=42% Similarity=0.730 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999997278998574453188899999998630546453540389858989999
Q gi|254780860|r 14 FMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVI 93 (348)
Q Consensus 14 ~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~ 93 (348)
T Consensus 2 ~~li~~~~~~~~vl~~vaf~~l~ERKi~a~~Q~R~GP~~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~i~~~ 81 (306)
T MTH00143 2 VELLSSVVTYVCVLLAVAFFTLLERKGLGYFQLRKGPNKVGLMGLPQPLADAVKLFSKELVKPTLSNKFLFFLAPFLSLF 81 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999999976571809778654459999999998866777530059999997999999
Q ss_pred HHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99866531878552356405057899999999999999998751244321012334431013678766899999999823
Q gi|254780860|r 94 LSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAG 173 (348)
Q Consensus 94 ~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~g 173 (348)
T Consensus 82 ~~~~~~~~~P~~~--~~~~~~~~ll~~l~l~sl~~~~~~l~Gw~S~skYs~lG~~R~~~q~iSYEi~l~l~~l~~~~~~g 159 (306)
T MTH00143 82 LALLLWQLYPSYF--SCSYFGWGMLLFLCVSSLNVYGVMLAGWSSNSKYALLGAVRAVAQSISYEVSMSLILLFPLLLSG 159 (306)
T ss_pred HHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9988870234666--41003410689998888888987760566888332406759998656664779999999999807
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 78989999985100002211112446669999998999999997687543010035760888898754302320115889
Q gi|254780860|r 174 SLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFML 253 (348)
Q Consensus 174 s~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l 253 (348)
T Consensus 160 s~~l~~i~~~q~~-------------~~~~~~~~~~~~~~~i~~lae~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~fl 226 (306)
T MTH00143 160 SFSFQEVSESQFS-------------VWLGFLNFPVMLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFL 226 (306)
T ss_pred CCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHCCHHHHHHHH
T ss_conf 7516899998888-------------999999999999999999999788999999764000341212315678999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999732365543122366665689999999999999999999741012549999885427899999999
Q gi|254780860|r 254 AEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAM 333 (348)
Q Consensus 254 ~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~ 333 (348)
T Consensus 227 ~ey~~~~~~s~l~~~lFlGg~~~~--------~~~~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl~l~~ 298 (306)
T MTH00143 227 AEYGNILFMSVLTVVLFFGGSVFS--------LLSGILFSLKVLLFAFLFIWVRASYPRYRYDLLMMLCWKSFLPFSLSI 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999985651212--------367999999999999999999863712649999998879999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780860|r 334 VLIVSFF 340 (348)
Q Consensus 334 ~~~~~~~ 340 (348)
T Consensus 299 l~~~~~l 305 (306)
T MTH00143 299 LVLFVLL 305 (306)
T ss_pred HHHHHHH
T ss_conf 9999997