HHsearch alignment for GI: 254780860 and conserved domain: MTH00216
>MTH00216 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=664.05 Aligned_cols=319 Identities=51% Similarity=0.916 Sum_probs=304.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348)
Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348)
T Consensus 3 ~~~~~~~~~~l~~~~~vll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KL~~Ke~i~p~~~~~~~f~~aP~ 82 (327)
T MTH00216 3 VTIIYLIFKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVGGLLQPFADGVKLFTKEMVIPHQANLFVYIVAPV 82 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999999999999999999999997637180857835866999999999984887765235999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348)
Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348)
T Consensus 83 i~~~~~l~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~~~l~GwsSnskYs~lG~~R~~aq~iSYEi~l~l~~~~v~ 162 (327)
T MTH00216 83 LSFTLAFIVWGVIPYERGVLISDLKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLILISVL 162 (327)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888411688630107658899999999988888787321568860775188999999873274999999999
Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348)
Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348)
T Consensus 163 l~~~s~~l~~i~~~q~~~------------~~~~~~~~~~~~i~li~~laE~nR~PFD~~EaESELVsG~~tEYsg~~f~ 230 (327)
T MTH00216 163 LCVGSLSITEIVLAQNNG------------IWFFFPLFPVTIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFA 230 (327)
T ss_pred HHHCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEHHHHHCCHHHH
T ss_conf 981688489999999714------------89885146557899999999968899998865454510028886268789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348)
Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348)
T Consensus 231 l~fl~EY~~i~~~s~l~~~lFlgg~~~~~~----~~~~~~~~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~l~Wk~lLPl 306 (327)
T MTH00216 231 LFFLAEYAHIILMSCLTTILFLGGWLSPIK----YLKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKGYLPL 306 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998652412003----3435799999999999999999997352152999699999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780860|r 330 SFAMVLIVSFFLKIY 344 (348)
Q Consensus 330 ~l~~~~~~~~~~~~~ 344 (348)
T Consensus 307 ~l~~l~~~~~~~~~~ 321 (327)
T MTH00216 307 SLGVVTFVASVLFGL 321 (327)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999997